diff --git a/README.md b/README.md index a0aec8b356e55c35fcda519d6bb22b6cda859310..cb227b9d2d20b5238d33cda4dcdefd3ba9ed0a06 100644 --- a/README.md +++ b/README.md @@ -19,8 +19,8 @@ The code published by the authors of open-access neuroscience papers, as found a verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, **under the license of its repository**. -- **136,878 unique files** (1,165 MB of text) from **2,737 repositories**, - in 8 Parquet block(s). +- **151,635 unique files** (1,306 MB of text) from **3,103 repositories**, + in 9 Parquet block(s). - **Only files whose repository's license allows redistribution**, confirmed by the repository's own license file (or, for an archive without one, by its record). Files without such a license are never copied here: Open Scientific Code Registry (OSCR) links to them at the source. @@ -43,25 +43,25 @@ Each file keeps the license of its repository, given in the repository's manifes | license | repositories | |---|---| -| MIT | 1153 | -| CC-BY-4.0 | 639 | -| GPL-3.0 | 394 | -| Apache-2.0 | 211 | -| BSD-3-Clause | 125 | -| CC0-1.0 | 43 | -| GPL-2.0 | 30 | -| BSD-2-Clause | 27 | -| CC-BY-NC-4.0 | 23 | -| AGPL-3.0 | 23 | -| CC-BY-NC-SA-4.0 | 16 | -| LGPL-3.0 | 11 | -| other-open | 9 | +| MIT | 1298 | +| CC-BY-4.0 | 734 | +| GPL-3.0 | 438 | +| Apache-2.0 | 239 | +| BSD-3-Clause | 140 | +| CC0-1.0 | 54 | +| BSD-2-Clause | 35 | +| GPL-2.0 | 32 | +| AGPL-3.0 | 25 | +| CC-BY-NC-4.0 | 24 | +| CC-BY-NC-SA-4.0 | 18 | +| CC-BY-NC-ND-4.0 | 14 | +| other-open | 13 | +| LGPL-3.0 | 13 | | CC-BY-SA-4.0 | 9 | -| CC-BY-NC-ND-4.0 | 9 | +| MPL-2.0 | 5 | | LGPL-2.1 | 5 | -| MPL-2.0 | 4 | +| Artistic-2.0 | 3 | | Unlicense | 2 | -| Artistic-2.0 | 2 | | EUPL-1.2 | 1 | | CECILL-2.1 | 1 | @@ -70,4 +70,4 @@ Files under a non-commercial license (CC BY-NC…) may only be reused non-commer ## Takedown An author who wants a file removed: open an issue at -https://github.com/yannbellec/Open-Scientific-Code-Registry-OSCR-/issues. +https://github.com/NeuraCrypt/OSCR/issues. diff --git a/blocks/00009.parquet b/blocks/00009.parquet new file mode 100644 index 0000000000000000000000000000000000000000..b2b8e2d6df8e1547591597f3f7e2added979ebf3 --- /dev/null +++ b/blocks/00009.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9b6c0524745a77f13116ddd7e1cf0f1aad74b0d30593c63ac5463bf8a059f1d7 +size 25639343 diff --git a/manifests/00/github.com__ewels__multiqc.json b/manifests/00/github.com__ewels__multiqc.json new file mode 100644 index 0000000000000000000000000000000000000000..3902bd16f5e1150410a2e12efc78e1f9dcb61421 --- /dev/null +++ b/manifests/00/github.com__ewels__multiqc.json @@ -0,0 +1,6366 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ewels/multiqc", + "url": "https://github.com/ewels/MultiQC", + "host": "github.com", + "commit": "dc565eb9eef7b22a289ab7eec78e5efb6bf297c3", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": ".claude/skills/triaging-module-requests/scripts/fetch-tool-metrics.js", + "sha256": "0db5b003c2a7f28a73a6262de7d347e0db7d73521074d6f0fbb4c5df00becce0", + "language": "JavaScript", + "lines": 208, + "truncated": false, + "block": 9, + "row": 2072 + }, + { + "path": ".github/workflows/code_checks.py", + "sha256": "4ba1573082cd5afc3b61edf338ae2ab2e95e940cc300b2d7597622dbd5c5ea98", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 9289 + }, + { + "path": ".prettierrc.js", + "sha256": "c6071107b0f9aa4a3416f8a1a72ccbc072cafd97a52b11a2ba4d8dd212dc1b6a", + "language": "JavaScript", + "lines": 14, + "truncated": false, + "block": 9, + "row": 2020 + }, + { + "path": "LICENSE", + "sha256": "c61f12da7cdad526bdcbed47a4c0a603e60dbbfdaf8b66933cd088e9132c303f", + "language": "License", + "lines": 621, + "truncated": false, + "block": 6, + "row": 2118 + }, + { + "path": "README.md", + "sha256": "65c5a6e48c47556b8dd4bd3284d20dceb458d6291709a6a720d8ba59e62de1f0", + "language": "Text", + "lines": 148, + "truncated": false, + "block": 9, + "row": 14674 + }, + { + "path": "multiqc/__init__.py", + "sha256": "8c3045d9300c0d242168d2aa797d81e43d7a80a3e6d5d3cd4e0a3033d88cbe5e", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 7627 + }, + { + "path": "multiqc/__main__.py", + "sha256": "3b37de9ece86c4915193fa818cd096da4bf6e591d6dd0d9b02d78c727e18b7d6", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6796 + }, + { + "path": "multiqc/base_module.py", + "sha256": "79de92794d4d77496373c6ee4d6fc0f0954766202ef95f42885a237717bc390d", + "language": "Python", + "lines": 1485, + "truncated": false, + "block": 9, + "row": 12567 + }, + { + "path": "multiqc/config.py", + "sha256": "0c50b2569c9a33fecb90a2f367b6eee594070b469e56e499c8c1ce48cfb325e9", + "language": "Python", + "lines": 706, + "truncated": false, + "block": 9, + "row": 12098 + }, + { + "path": "multiqc/core/ai.py", + "sha256": "bed60f3679a75aaac28d395537f34b40c77ad55f70f6f4e873a94f66fef71742", + "language": "Python", + "lines": 1139, + "truncated": false, + "block": 9, + "row": 12478 + }, + { + "path": "multiqc/core/config_check.py", + "sha256": "36be01d9c6c7b58580a4a8a077e079e2f5191e3dcbc8c8c234a6dd6d9e72145c", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8337 + }, + { + "path": "multiqc/core/exceptions.py", + "sha256": "f1c2ed5a7a249623768d36fc007871bf9392bbf1b2fd18d6bd15437ad8c99bc5", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6708 + }, + { + "path": "multiqc/core/exec_modules.py", + "sha256": "6237f78e3727002c9696a17cda554b7065032dfcd805cf30585b2a1b6e2a44dc", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 9, + "row": 10721 + }, + { + "path": "multiqc/core/file_search.py", + "sha256": "8ca6f262f90e02771f25db47b3c302152cd58bfe33af40304c8c2b88ed32142e", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 9, + "row": 9667 + }, + { + "path": "multiqc/core/log_and_rich.py", + "sha256": "9ba295efaee9f7fa89a1ca414cac31bdb322019e1ea8c4151c18da4152da60a2", + "language": "Python", + "lines": 411, + "truncated": false, + "block": 9, + "row": 11386 + }, + { + "path": "multiqc/core/order_modules_and_sections.py", + "sha256": "9be05aafdfb9caa883ddfb18c3535d84d112e42574e644b313f43c7797332b18", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 9676 + }, + { + "path": "multiqc/core/plot_data_store.py", + "sha256": "b8661ff20fb4d6771a173f6be10f266cfc15fbc2e5da048169e52faa6554f762", + "language": "Python", + "lines": 392, + "truncated": false, + "block": 9, + "row": 11338 + }, + { + "path": "multiqc/core/plugin_hooks.py", + "sha256": "877f42e4174a401ec5e71d9aa2dadd7396d39a615840797e0c6c944f1a785b1c", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6757 + }, + { + "path": "multiqc/core/software_versions.py", + "sha256": "e7c494959ca085296b7bd82adec2eb98d93cc4ce634fbbedbf41abb296f924cc", + "language": "Python", + "lines": 210, + "truncated": false, + "block": 9, + "row": 10589 + }, + { + "path": "multiqc/core/special_case_modules/custom_content.py", + "sha256": "d342b7defd0511b84fd2835210edec9a5262579b0e15fe3d95e832f0d6e5e7a2", + "language": "Python", + "lines": 987, + "truncated": false, + "block": 9, + "row": 12435 + }, + { + "path": "multiqc/core/special_case_modules/load_multiqc_data.py", + "sha256": "83e0068e7889ff44589ac50ba0798de6fa52ef85e16417f9f1e29f72c40ede28", + "language": "Python", + "lines": 437, + "truncated": false, + "block": 9, + "row": 11998 + }, + { + "path": "multiqc/core/special_case_modules/profile_runtime.py", + "sha256": "6c4ce7a2de0e9eb34e3e8cc8e59a5940be292ddb496647f2076d6c6cf8bde9f4", + "language": "Python", + "lines": 261, + "truncated": false, + "block": 9, + "row": 11045 + }, + { + "path": "multiqc/core/special_case_modules/software_versions.py", + "sha256": "8f602d763114fd5a00857498e6434e4e6c1d1eebdca53145673cab1398377964", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 9882 + }, + { + "path": "multiqc/core/strict_helpers.py", + "sha256": "c7050b0569de50802fb8f17fc793b7c44327c97375eee2a92a6b419be2b0ab6f", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6560 + }, + { + "path": "multiqc/core/tmp_dir.py", + "sha256": "ea3730e4355f1d12384f6895c91436263d8d1011ea951a323f451da318263034", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 7449 + }, + { + "path": "multiqc/core/update_config.py", + "sha256": "9bab57e198c5ff9a9553ae2019cf02fa7a4ed2d2b792ed9ef7f732a07ccb6604", + "language": "Python", + "lines": 273, + "truncated": false, + "block": 9, + "row": 10971 + }, + { + "path": "multiqc/core/version_check.py", + "sha256": "3180c143eccb48f626d1e9a90caeaebfdf894a24b60cd7d839c31938e4708f92", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 8774 + }, + { + "path": "multiqc/core/write_results.py", + "sha256": "6223f467784dc2bc18661a685ecfda3487d957960b8805c23de55fbf2451fa8f", + "language": "Python", + "lines": 696, + "truncated": false, + "block": 9, + "row": 12119 + }, + { + "path": "multiqc/interactive.py", + "sha256": "fcc025403bb0887242a1a107c6092d6cd5c3a18ef8913b566e87284b8a0bf240", + "language": "Python", + "lines": 482, + "truncated": false, + "block": 9, + "row": 11726 + }, + { + "path": "multiqc/modules/adapterremoval/__init__.py", + "sha256": "152ee9857f7cdb8fb41e44a9c94ec1dfec2f44c6fd9b68387f4c8753e2df94d9", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6323 + }, + { + "path": "multiqc/modules/adapterremoval/adapterremoval.py", + "sha256": "fb5da4e1e7e4efb182d5cee5eee265ae07ad0b69c0ef8e0c2d6fa31bc447e0d4", + "language": "Python", + "lines": 402, + "truncated": false, + "block": 9, + "row": 11640 + }, + { + "path": "multiqc/modules/afterqc/__init__.py", + "sha256": "aacdaa2561e4cfa055c521d1ab3192f11ee93e2cc489e9fc1fd723ea966c0a30", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6229 + }, + { + "path": "multiqc/modules/afterqc/afterqc.py", + "sha256": "40378955c4b0e20a84539e0e7e94df134217df610dcfaf248e5b97433942e5d4", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 9, + "row": 9785 + }, + { + "path": "multiqc/modules/anglerfish/__init__.py", + "sha256": "f9613ecb19cdfb8da05d34b6740424a0bfc81a22bc19a8021b875f7c11195728", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6298 + }, + { + "path": "multiqc/modules/anglerfish/anglerfish.py", + "sha256": "4723153e7b2c70b790a3fc5fc3c58a9151d139244516f97b17747374441fd125", + "language": "Python", + "lines": 253, + "truncated": false, + "block": 9, + "row": 11006 + }, + { + "path": "multiqc/modules/ataqv/__init__.py", + "sha256": "0f519f435d3539ad249915b04bc6800cdc7d9461c422801ad49eff5840aa0162", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6155 + }, + { + "path": "multiqc/modules/ataqv/ataqv.py", + "sha256": "290ec231ccfe333d4bc36a270bd21e6fbe8dc672319928c4e719029d8c0dad5d", + "language": "Python", + "lines": 432, + "truncated": false, + "block": 9, + "row": 11717 + }, + { + "path": "multiqc/modules/bakta/__init__.py", + "sha256": "6ac1932a1278b4576b90151350b179887e7cdd796262459f7f6d450e177d563e", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6166 + }, + { + "path": "multiqc/modules/bakta/bakta.py", + "sha256": "769afc3c700e9e83b2b67865426cdc741f2b713d84a14f4f4378cca56bd388b1", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 9, + "row": 9515 + }, + { + "path": "multiqc/modules/bamdst/__init__.py", + "sha256": "4e47d571a8dc0cbef99a7f601edde98fbfcbe9b085c2cdf700dd65f8040b10d8", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6196 + }, + { + "path": "multiqc/modules/bamdst/bamdst.py", + "sha256": "030c1ff9a6d89b5200c894641f44ece2bb4cdcf0984115e60d454792e12d7b14", + "language": "Python", + "lines": 522, + "truncated": false, + "block": 9, + "row": 11852 + }, + { + "path": "multiqc/modules/bamtools/__init__.py", + "sha256": "d8cf40a15ad8d8dcdb6d9865a96cf781c7bf385897e22e061d9026bb2a741cc1", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6259 + }, + { + "path": "multiqc/modules/bamtools/bamtools.py", + "sha256": "89971e53a872e6e28754f0c10954cf02b5a9886c016d98c17ae6c1bdc2f42034", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7477 + }, + { + "path": "multiqc/modules/bamtools/stats.py", + "sha256": "0ed83013c6682d16f4fdc2d11db901cad1e938d7cdc8f93e0a2cd0e6e87b239b", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 9, + "row": 9510 + }, + { + "path": "multiqc/modules/bases2fastq/__init__.py", + "sha256": "11309a57932374f4157636eb432410213011da6052684d0b9e170901809146dc", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6300 + }, + { + "path": "multiqc/modules/bases2fastq/bases2fastq.py", + "sha256": "def55249ef011da414efad9064256bb1ae2957f39f58f26a145c156f64360c83", + "language": "Python", + "lines": 1110, + "truncated": false, + "block": 9, + "row": 12482 + }, + { + "path": "multiqc/modules/bases2fastq/plot_runs.py", + "sha256": "5ed7588f8d82ad4d6b2886c3f7686c025bb00bb7bf6b09b6e127cdb3486052d4", + "language": "Python", + "lines": 835, + "truncated": false, + "block": 9, + "row": 12349 + }, + { + "path": "multiqc/modules/bases2fastq/plot_samples.py", + "sha256": "02c775919d61e486d76d6966267670dce86ad46d90d023420e7a1358699c2e3e", + "language": "Python", + "lines": 519, + "truncated": false, + "block": 9, + "row": 11990 + }, + { + "path": "multiqc/modules/bases2fastq/tests/conftest.py", + "sha256": "f0eec3fb3543b2fbbec225d6cfed6cfaf4a1b2e87c08cee9d538f5e67d683007", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6919 + }, + { + "path": "multiqc/modules/bases2fastq/tests/test_bases2fastq.py", + "sha256": "69b2423a41199b549f06d4cddb5a49f519fdd6c2d2b32bc31495229ca32752a3", + "language": "Python", + "lines": 500, + "truncated": false, + "block": 9, + "row": 11942 + }, + { + "path": "multiqc/modules/bbduk/__init__.py", + "sha256": "efd18ed7657be70c7c4246c997a920c3be02db70234c531953d5a61d689f0db0", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6180 + }, + { + "path": "multiqc/modules/bbduk/bbduk.py", + "sha256": "61c9afadedd16a33d8437460f2f31e5c3444028a1db608f9deade951190f762a", + "language": "Python", + "lines": 195, + "truncated": false, + "block": 9, + "row": 10333 + }, + { + "path": "multiqc/modules/bbmap/__init__.py", + "sha256": "7f878d42e7ec37b2475a720d0a144909bba717451fd4993f73c556aaac8c1f48", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6170 + }, + { + "path": "multiqc/modules/bbmap/bbmap.py", + "sha256": "a5527ff226ce7c20675bc901c85541216677d06606a4ca4b21d49e86e9adbba6", + "language": "Python", + "lines": 349, + "truncated": false, + "block": 9, + "row": 11480 + }, + { + "path": "multiqc/modules/bbmap/bbmap_filetypes.py", + "sha256": "dfbc32ec4ef720493277a83a83feceb0814e0bb865c5c06ceda4179522f2e401", + "language": "Python", + "lines": 496, + "truncated": false, + "block": 9, + "row": 11593 + }, + { + "path": "multiqc/modules/bbmap/plot_aqhist.py", + "sha256": "3f9453db517419798f7071314f18493f2625ece715dec0953be24bb36ff3a038", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7698 + }, + { + "path": "multiqc/modules/bbmap/plot_basic_hist.py", + "sha256": "267651005764edef36bff117cc7a17e32e510f2a42b088b6f56f349f908fe1d2", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7171 + }, + { + "path": "multiqc/modules/bbmap/plot_bbsplit.py", + "sha256": "dfccf94c423815968925c116ff39d3bd4277702331991e117c85eb2a49ecd32b", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7376 + }, + { + "path": "multiqc/modules/bbmap/plot_bhist.py", + "sha256": "10dfb6d734e34485515bbc84f295a7dd397b1c774f69336fa63d01bfedeb1a60", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 7621 + }, + { + "path": "multiqc/modules/bbmap/plot_bqhist.py", + "sha256": "51b3ce9dbf7fc159a4b52f347b9b9bbf352e113c6632978a05c3db6690288ba3", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 9, + "row": 7988 + }, + { + "path": "multiqc/modules/bbmap/plot_covhist.py", + "sha256": "221bbe3962002532ca0cc044b47a73ddac9ccb64c952e178d08adf42f35210b0", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7322 + }, + { + "path": "multiqc/modules/bbmap/plot_idhist.py", + "sha256": "9ea0a44c20b41cc144f182053de596946eb95a70b5f6dfd5cbabf3bcc8efe36d", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7505 + }, + { + "path": "multiqc/modules/bbmap/plot_ihist.py", + "sha256": "3b8e4ba73b42d896e514ec682e25a5f1a5664d2eb8321b7d8957a0324440ed6a", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 9, + "row": 7278 + }, + { + "path": "multiqc/modules/bbmap/plot_indelhist.py", + "sha256": "882433da996545768ab6bc646b71e0dbeea0071cddcac6772d35ecae90083281", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7528 + }, + { + "path": "multiqc/modules/bbmap/plot_mhist.py", + "sha256": "981d82105e922cdb041be79a6809d46986ca675381fb2b5da62bb02563909222", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 7688 + }, + { + "path": "multiqc/modules/bbmap/plot_qahist.py", + "sha256": "4c42ed2c7d8c670f98df2be5c428280ea9d266d4b86fad407d2a5c04f2fe74d4", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 9, + "row": 8398 + }, + { + "path": "multiqc/modules/bbmap/plot_qchist.py", + "sha256": "70508088fafe8ee281f76d312d241ae3a793b116df342d33f3135277930307cd", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 9, + "row": 7365 + }, + { + "path": "multiqc/modules/bbmap/plot_qhist.py", + "sha256": "90a90de616a92128d85b0e6c885a4667c3b7abd577d99d047463ea7868b30e6f", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 8000 + }, + { + "path": "multiqc/modules/bcftools/__init__.py", + "sha256": "9ea70e47740a0e112caaa4c9bdb7b5009530ac133886f8fbd6e16a7f7a0d98f9", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6251 + }, + { + "path": "multiqc/modules/bcftools/bcftools.py", + "sha256": "173ce23c09b1d5a201cc33f972a41d0d676cf47b32b85cf9d5e29076a0d0382a", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 7933 + }, + { + "path": "multiqc/modules/bcftools/stats.py", + "sha256": "19a3de1bc4711340d5c5dc393f0bb66f2671c22d461229ba565fa4a9baea7318", + "language": "Python", + "lines": 495, + "truncated": false, + "block": 9, + "row": 11881 + }, + { + "path": "multiqc/modules/bcl2fastq/__init__.py", + "sha256": "4d6ff7935fb814f176223032a02ed3411172b536a5d784896f29d63e3b8b8481", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6275 + }, + { + "path": "multiqc/modules/bcl2fastq/bcl2fastq.py", + "sha256": "fec7c4a754ffe90e91dcc5fbff045d0eb9a4d540c779cf6e7c505f39ea8880d7", + "language": "Python", + "lines": 527, + "truncated": false, + "block": 9, + "row": 12047 + }, + { + "path": "multiqc/modules/bclconvert/__init__.py", + "sha256": "a118475de29bcb08a204eb06b5bba2c053ed7f0eb5c470fb8c295539ba3b0b3c", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6292 + }, + { + "path": "multiqc/modules/bclconvert/bclconvert.py", + "sha256": "672efe9ec0b9bde853f84077450cdd9467701b8bd6328693e482a40f09c12e07", + "language": "Python", + "lines": 1103, + "truncated": false, + "block": 9, + "row": 12474 + }, + { + "path": "multiqc/modules/biobambam2/__init__.py", + "sha256": "ed14d05b97f719679cedd91187199ac3fcbaf5da6e8b70f64fbe25aa55f9264c", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6297 + }, + { + "path": "multiqc/modules/biobambam2/biobambam2.py", + "sha256": "3388a576432f9b728d1b1d3390cbd5199d0e712c220f8a87b7144d4840b781db", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7587 + }, + { + "path": "multiqc/modules/biobloomtools/__init__.py", + "sha256": "a0765799e18068e45bf36390fbfad6bdfb25f6c6ebc09eca59067d3726920c34", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6321 + }, + { + "path": "multiqc/modules/biobloomtools/biobloomtools.py", + "sha256": "1845dbd6a6aa08c1130211acdea2c42bf5637413fdaab5da1ab5c7858c5e52a2", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 9, + "row": 9226 + }, + { + "path": "multiqc/modules/biscuit/__init__.py", + "sha256": "9ad375d9b8e6c97b0f66a1ac8ec5a708d605d0b5f874cf8d85c587d457ec31c7", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6225 + }, + { + "path": "multiqc/modules/biscuit/biscuit.py", + "sha256": "0fde0c31872e4ead4e719108535b51a2412bb1b3e682960975d5edd3c4286f04", + "language": "Python", + "lines": 1021, + "truncated": false, + "block": 9, + "row": 12393 + }, + { + "path": "multiqc/modules/biscuit/tests/test_biscuit.py", + "sha256": "33544d3c0d45660bf31733353724f231bf923b92304261630fb749f067656343", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 7522 + }, + { + "path": "multiqc/modules/bismark/__init__.py", + "sha256": "ba91cb76d1c51c3d35b222e1e1f1e1f10f56317bfc899bffd7baafc3b91d06b9", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6232 + }, + { + "path": "multiqc/modules/bismark/bismark.py", + "sha256": "46a30f8a0baab3088188c90094a597feff562dd62cbfa4ffbd1280bfc16cf608", + "language": "Python", + "lines": 498, + "truncated": false, + "block": 9, + "row": 11964 + }, + { + "path": "multiqc/modules/bowtie1/__init__.py", + "sha256": "9627cfc25fe472fd58a760a8f08a825e835e829a81b4c76b288b32345fd07ce3", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6224 + }, + { + "path": "multiqc/modules/bowtie1/bowtie1.py", + "sha256": "b2e16a3bd629137c647d201bab5448a83a78a18294832adfd70611557d5f60d7", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 9752 + }, + { + "path": "multiqc/modules/bowtie2/__init__.py", + "sha256": "d8f52dfef06987e7209c342a1657afc6bc74cc6e18bc04de300d0dc4369cdf23", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6235 + }, + { + "path": "multiqc/modules/bowtie2/bowtie2.py", + "sha256": "1b61db10747c5da8d6a1c96ba0d373be5048ad99fc248c8f1ca572541b047397", + "language": "Python", + "lines": 310, + "truncated": false, + "block": 9, + "row": 11409 + }, + { + "path": "multiqc/modules/busco/__init__.py", + "sha256": "a60982a1f1bca5af7569a7b5ff4991b3401cabf31cbb11929bfdbb6c03c2fc0e", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6174 + }, + { + "path": "multiqc/modules/busco/busco.py", + "sha256": "1aa1b7605898e9a1d58020f4793897ae61649da9af664f4dbc16cac22386faf8", + "language": "Python", + "lines": 144, + "truncated": false, + "block": 9, + "row": 9642 + }, + { + "path": "multiqc/modules/bustools/__init__.py", + "sha256": "fd1c3846c4f2a036466b506622627b79b5b9fe55061de5220d7c1f31fb8c8ece", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6266 + }, + { + "path": "multiqc/modules/bustools/bustools.py", + "sha256": "17179a31548a416498609d916e9b12e75ed73c6e5cf12181bea09d4c4a371212", + "language": "Python", + "lines": 302, + "truncated": false, + "block": 9, + "row": 11194 + }, + { + "path": "multiqc/modules/ccs/__init__.py", + "sha256": "f2e3c4a43c54a39e5a341f544b41735533a7322449b14b8b557860ba92717dda", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6143 + }, + { + "path": "multiqc/modules/ccs/ccs.py", + "sha256": "a10884919e24be62b02e1134eacc7756d2fe0bb652528dddcca8194042463b6b", + "language": "Python", + "lines": 336, + "truncated": false, + "block": 9, + "row": 11240 + }, + { + "path": "multiqc/modules/ccs/tests/test_ccs.py", + "sha256": "d95f53e68c98df8e54a708b9502e6f5bc757f9f793f12f2af96ce30c8dfd6b30", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 8732 + }, + { + "path": "multiqc/modules/cellranger/__init__.py", + "sha256": "0ac1f3a416e21bfa8a834094bef3907d4b07a6616d59b388769a7d60e33fa16d", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6287 + }, + { + "path": "multiqc/modules/cellranger/cellranger.py", + "sha256": "9f2f537317f79c376b27a8013506eb5c43f4371d79ebe54c663f2bbef063636b", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7865 + }, + { + "path": "multiqc/modules/cellranger/count.py", + "sha256": "021e83111d55f0dc870a1af5abe3c7564f362cfefd8921c29eab3e9e98bfd356", + "language": "Python", + "lines": 486, + "truncated": false, + "block": 9, + "row": 11898 + }, + { + "path": "multiqc/modules/cellranger/utils.py", + "sha256": "36f4f8aea1b35901625f01ba8d8b9936b018cebc3795201be3bf6562a04ff290", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 9, + "row": 8501 + }, + { + "path": "multiqc/modules/cellranger/vdj.py", + "sha256": "834abc87845643fd7b28cf229e03b386952100bf493b5308e54ecb74b2b082e2", + "language": "Python", + "lines": 330, + "truncated": false, + "block": 9, + "row": 11233 + }, + { + "path": "multiqc/modules/cellranger_arc/__init__.py", + "sha256": "e82f78eda4b866b85204072751aed334753fb97307d424cafba884af0f95d327", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6325 + }, + { + "path": "multiqc/modules/cellranger_arc/cellranger_arc.py", + "sha256": "24dba923240b147f4d944902c88197f5f4978335ef9b24ecb3e30089398be618", + "language": "Python", + "lines": 434, + "truncated": false, + "block": 9, + "row": 11720 + }, + { + "path": "multiqc/modules/cellranger_arc/tests/test_cellranger_arc.py", + "sha256": "8cee475017bf5728aece829e4b11f6dcbb3ba089dda2f0d06f65679f7cb126cb", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 9, + "row": 9406 + }, + { + "path": "multiqc/modules/cellranger_arc/utils.py", + "sha256": "2419425808ca39351400006b556f2933eb4304b1f6234ce072d1af3881856d97", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 9, + "row": 9187 + }, + { + "path": "multiqc/modules/cells2stats/__init__.py", + "sha256": "4d097ac4ff77a8dc2d0cf9ef15d86f2850a43bae3f4e04066cda4b8e9269ec08", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6303 + }, + { + "path": "multiqc/modules/cells2stats/cells2stats.py", + "sha256": "b76d7134030937d0001aec11ebf2ea73423fb329e25366c1e45a8c989ae4f5fa", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 8881 + }, + { + "path": "multiqc/modules/cells2stats/cells2stats_bar_plots.py", + "sha256": "e209fb13565c9ce3bd961f93099900368365c8fe3d962b3f7de2decc8362c6b6", + "language": "Python", + "lines": 311, + "truncated": false, + "block": 9, + "row": 11224 + }, + { + "path": "multiqc/modules/cells2stats/cells2stats_tables.py", + "sha256": "b36260c16b72d591f0376ad3a4d8387bf37d1f3276b570afd712c97f0a6cb31c", + "language": "Python", + "lines": 345, + "truncated": false, + "block": 9, + "row": 11103 + }, + { + "path": "multiqc/modules/cells2stats/queries.py", + "sha256": "0e7aec9e1055fec7357206392ffab0a539d5b0ce2f1467e87b3a8e0c88fcb254", + "language": "Python", + "lines": 287, + "truncated": false, + "block": 9, + "row": 11208 + }, + { + "path": "multiqc/modules/cells2stats/utils.py", + "sha256": "94be5123d98c55796c8bd19fd6bc1da29e5fb1a96725f02a36a78acd05e01fc4", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 7879 + }, + { + "path": "multiqc/modules/checkatlas/__init__.py", + "sha256": "c931b4aa1ebf41ca1fa435a26a482e873f46c1aa56545b5c9c8b9ee9388e8b1f", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6295 + }, + { + "path": "multiqc/modules/checkatlas/checkatlas.py", + "sha256": "367aebcbf332239cdfa7325f7cacb85f7410ca9326f483da603b33fe08040bd0", + "language": "Python", + "lines": 633, + "truncated": false, + "block": 9, + "row": 12164 + }, + { + "path": "multiqc/modules/checkm/__init__.py", + "sha256": "ab63f1040ffb36e01c0ea0a3437172501f8762ab31738700aa9ee420cbc72958", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6207 + }, + { + "path": "multiqc/modules/checkm/checkm.py", + "sha256": "e5e525d34494063090f3d191f8e4bc0b13dfb585a4e52c9d2f507d0e94a430a4", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 9, + "row": 10526 + }, + { + "path": "multiqc/modules/checkm2/__init__.py", + "sha256": "aeb8891fb23a19b8593d2897485cb76b3c043aaa591ce88b50720a65c306711a", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6230 + }, + { + "path": "multiqc/modules/checkm2/checkm2.py", + "sha256": "e4da4b322df59b894afec419872e91e9d0f242d4dcc6058913aaa8a1c101c690", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 9, + "row": 10172 + }, + { + "path": "multiqc/modules/checkqc/__init__.py", + "sha256": "a5f2c99f1910118b2f4977aa8319e3f9a53db932dce3dcaf4d88764be1867a14", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6228 + }, + { + "path": "multiqc/modules/checkqc/checkqc.py", + "sha256": "20c4ba9e6759930d3261466738e17d70360fd051aaa48c7d98614806ecb907fe", + "language": "Python", + "lines": 598, + "truncated": false, + "block": 9, + "row": 12023 + }, + { + "path": "multiqc/modules/clipandmerge/__init__.py", + "sha256": "86cd9e9ccf7f420406d090d950a9aa7b86f0b724ddf12c120cfeb99142689c6e", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6314 + }, + { + "path": "multiqc/modules/clipandmerge/clipandmerge.py", + "sha256": "388cfd14501d825d10f4e60a85a320dfd0e8d071381f263859c86f08bd1b40ee", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 9, + "row": 9395 + }, + { + "path": "multiqc/modules/clusterflow/__init__.py", + "sha256": "66afbc67d3ca88172a75b9348fd999f78d235e90af329881240ebae62a4d363e", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6305 + }, + { + "path": "multiqc/modules/clusterflow/clusterflow.py", + "sha256": "9f81252bd0dc0c196d45f0bbcbdfa7d4b37271813074516c371b435fecea1b5e", + "language": "Python", + "lines": 373, + "truncated": false, + "block": 9, + "row": 11504 + }, + { + "path": "multiqc/modules/conpair/__init__.py", + "sha256": "a2b539158cfd968dfadb996ffb393e09ac125375ba13eac63108f24700dd4ca3", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6227 + }, + { + "path": "multiqc/modules/conpair/conpair.py", + "sha256": "b014e52156c116e3934645ece19fd000251fa0ce464098c4f8b18a47d959eb5d", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 9388 + }, + { + "path": "multiqc/modules/cutadapt/__init__.py", + "sha256": "400bf0547954e8e4618b7c0fa3be76a9e459ffb1cfcc8c28610732f1c104dea8", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6242 + }, + { + "path": "multiqc/modules/cutadapt/cutadapt.py", + "sha256": "109f93c6d2cde081057b90a2fafe024b807cb54d018c40ddbad5e48e36c6361a", + "language": "Python", + "lines": 500, + "truncated": false, + "block": 9, + "row": 12024 + }, + { + "path": "multiqc/modules/damageprofiler/__init__.py", + "sha256": "975cb7600549139adb594bbb9a29ef6f7dfa4661cb24965194153bd458af16b4", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6324 + }, + { + "path": "multiqc/modules/damageprofiler/damageprofiler.py", + "sha256": "948e941b4d0bdaaa3abef57b99131754b6da5901261fdf7d62be4ed021a94b02", + "language": "Python", + "lines": 282, + "truncated": false, + "block": 9, + "row": 11067 + }, + { + "path": "multiqc/modules/deacon/__init__.py", + "sha256": "bb43396dcddbe5d98943b9fdabfce0c3c67f89c72c08b301333fc55a3e603361", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6208 + }, + { + "path": "multiqc/modules/deacon/deacon.py", + "sha256": "cf2c9c599e0ed56d85f0b879d4c9ebaefe0b58da8e07cfedc8332f6d2cb68952", + "language": "Python", + "lines": 308, + "truncated": false, + "block": 9, + "row": 11397 + }, + { + "path": "multiqc/modules/dedup/__init__.py", + "sha256": "71431ae53552d473e63c38f8aac6c7e37621ad3da892e6e6963f556fa82164d2", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6167 + }, + { + "path": "multiqc/modules/dedup/dedup.py", + "sha256": "aefdd8d14df131e860bb9fa5ea720eec590585bed347491f1bc3ebacae80baba", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 9, + "row": 10068 + }, + { + "path": "multiqc/modules/deeptools/__init__.py", + "sha256": "32d376f277feef2da88ce91fcc3d7d5ae94da74091f2f0638344853d6a2d0498", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6273 + }, + { + "path": "multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py", + "sha256": "7cd0c336c4f99188f90a0a41e4c072cf402dabdfc5308d562bb70bce4e989ee1", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 8471 + }, + { + "path": "multiqc/modules/deeptools/bamPEFragmentSizeTable.py", + "sha256": "f1f5456c8b9156a52e4ae7d0fcb1ca1b93834f448f5767b0a853e5fab8ee3bc3", + "language": "Python", + "lines": 261, + "truncated": false, + "block": 9, + "row": 10768 + }, + { + "path": "multiqc/modules/deeptools/deeptools.py", + "sha256": "063bd3e80abc0e97fae76778a188e855363b85ea2f94c2113c9190a6f601b39f", + "language": "Python", + "lines": 149, + "truncated": false, + "block": 9, + "row": 10127 + }, + { + "path": "multiqc/modules/deeptools/estimateReadFiltering.py", + "sha256": "057d2c249d7ae0e2c72a5c1616b41f88580047d65e86af91db8f9b0f4c430d39", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 9, + "row": 10355 + }, + { + "path": "multiqc/modules/deeptools/plotCorrelation.py", + "sha256": "c087ce9873e6a894aaae6ac9a9cfad95a5a39bea60c60a9f0f720251ed336bd8", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8771 + }, + { + "path": "multiqc/modules/deeptools/plotCoverage.py", + "sha256": "c1a04e30f52f3ea052ba46fdd8b247065c1e1190a1cddca8d06757e7f3184439", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 9, + "row": 10280 + }, + { + "path": "multiqc/modules/deeptools/plotEnrichment.py", + "sha256": "c2fb73a3f91bc2e39276b84d72886b2674e1e6c49320dc4d36d24a43a5d38c85", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 8929 + }, + { + "path": "multiqc/modules/deeptools/plotFingerprint.py", + "sha256": "358e9ecf8ec1ceadf785cee74dffe7a90518d73b58845f8cb93363046f217967", + "language": "Python", + "lines": 179, + "truncated": false, + "block": 9, + "row": 10240 + }, + { + "path": "multiqc/modules/deeptools/plotPCA.py", + "sha256": "421cf5fa0deb62b2813a97e29b5db174ab66acf1eb20bd9113d023679cd2ba48", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8546 + }, + { + "path": "multiqc/modules/deeptools/plotProfile.py", + "sha256": "3a187542953fbdd126b8b9d121f73464885e55c45a3bd213bd95b39b4648eb16", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 9, + "row": 9965 + }, + { + "path": "multiqc/modules/diamond/__init__.py", + "sha256": "a1c94687e8c91471909e1bfac70d29d6b90dd3665f442c9529a70dacfc9e2eb2", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6226 + }, + { + "path": "multiqc/modules/diamond/diamond.py", + "sha256": "be50b861759d8991eb6422494c1c442e23ee10e85fcf081e3ce70ca1a1278b71", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8765 + }, + { + "path": "multiqc/modules/disambiguate/__init__.py", + "sha256": "a61fb9c777f08ebf5a682687e9139c1a0e152252d1b630bc453bc44df4cad08a", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6315 + }, + { + "path": "multiqc/modules/disambiguate/disambiguate.py", + "sha256": "261f826531769910b8af2076beb7fea223f2dbe2c49eed19380c79d037d6e13b", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 8883 + }, + { + "path": "multiqc/modules/dragen/__init__.py", + "sha256": "1ca95e629ff5dce720d2ea00fcb51115a2604d0a8604ab5fda893e23015e9d2b", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6188 + }, + { + "path": "multiqc/modules/dragen/coverage_hist.py", + "sha256": "8d67d6e26ed414f4c772fb7404d73a1180bd6c93158abf356977ca2811367566", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 9, + "row": 9655 + }, + { + "path": "multiqc/modules/dragen/coverage_metrics.py", + "sha256": "9de93f90a1671f060c2cf402c0d20c68031eb8367ef7b0b9b561b963b52b8c5f", + "language": "Python", + "lines": 1806, + "truncated": false, + "block": 9, + "row": 12595 + }, + { + "path": "multiqc/modules/dragen/coverage_per_contig.py", + "sha256": "abbbe967fdc584769456384e67116b3c2904e8d2a62ce6f3c39f9d16c75bbb87", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 9, + "row": 10152 + }, + { + "path": "multiqc/modules/dragen/dragen.py", + "sha256": "9e70a388cd9de26199eb386a2f6bd9484b283984a151c857e057bbc9ad30562a", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 10256 + }, + { + "path": "multiqc/modules/dragen/dragen_gc_metrics.py", + "sha256": "021e0560a3df95cebbd2b16fa12e011bf077d7d6bec7c322ad64cc4465e759d4", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 9, + "row": 9628 + }, + { + "path": "multiqc/modules/dragen/fragment_length.py", + "sha256": "37cfca52cee876e5f66532140b42540c64339667c4c6d0c0657a66f27ec04a96", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 9, + "row": 9066 + }, + { + "path": "multiqc/modules/dragen/mapping_metrics.py", + "sha256": "f0fa9fc78b2bd58e692dbcf8e90e3f17d86f5339ed6511e73e373c3cd5134cf3", + "language": "Python", + "lines": 744, + "truncated": false, + "block": 9, + "row": 12321 + }, + { + "path": "multiqc/modules/dragen/overall_mean_cov.py", + "sha256": "2aff34742b3c9a3160dfedafd78edb9141238b34ce605dbbb488e4be2279afb6", + "language": "Python", + "lines": 144, + "truncated": false, + "block": 9, + "row": 9674 + }, + { + "path": "multiqc/modules/dragen/ploidy_estimation_metrics.py", + "sha256": "11bb700e58bf377c24bd12bc4456a25177124852969cc617344e18c045aa1e49", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 9, + "row": 9153 + }, + { + "path": "multiqc/modules/dragen/rna_quant_metrics.py", + "sha256": "d5c103aaabb660f726f0eaca7ff3f43c01c3caddc2ce19e5b8ff9def552de202", + "language": "Python", + "lines": 149, + "truncated": false, + "block": 9, + "row": 9843 + }, + { + "path": "multiqc/modules/dragen/rna_transcript_cov.py", + "sha256": "ba4336d7f9f05e9825ca7fb28895170c17da5ddc1825146c97a88214298213b5", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8271 + }, + { + "path": "multiqc/modules/dragen/sc_atac_metrics.py", + "sha256": "e39087aba449689e9091493f28d83315b75c42cb622b2f6b7e98b42208bf26b6", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 8866 + }, + { + "path": "multiqc/modules/dragen/sc_rna_metrics.py", + "sha256": "3bc71c0a92d1971ed6061f9b1c369c957f290c2c5a2816aac3629e1d1ebeb67e", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 8787 + }, + { + "path": "multiqc/modules/dragen/tests/test_dragen.py", + "sha256": "f820b5232e13c88f00931cdbdf5e0cf97c0422df3db3aa2789f992085019fac8", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7117 + }, + { + "path": "multiqc/modules/dragen/time_metrics.py", + "sha256": "ddaee9e1af1ecde0a6819bff1f26a84aa158cfdef4880cf7a3e66c8a6287c91d", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 9, + "row": 8899 + }, + { + "path": "multiqc/modules/dragen/trimmer_metrics.py", + "sha256": "16c82406b20342efa9e3f96316f149ff86e32159423f39eebc52e74d38dfafd4", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 9, + "row": 8696 + }, + { + "path": "multiqc/modules/dragen/utils.py", + "sha256": "a0e45cffd1bd31d9738e6cf1e64d0c49b464fca0a6c26fb65523106eca494345", + "language": "Python", + "lines": 318, + "truncated": false, + "block": 9, + "row": 11154 + }, + { + "path": "multiqc/modules/dragen/vc_metrics.py", + "sha256": "ea6968e591ac7a37b07740547c5524a12f572e4b4d9f907ddbe9b57e03fbb62f", + "language": "Python", + "lines": 472, + "truncated": false, + "block": 9, + "row": 11787 + }, + { + "path": "multiqc/modules/dragen_fastqc/__init__.py", + "sha256": "054c31943252da5c99479599ae440a3f48d5dd7ff75d430f21ee84b9d6aa9f46", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6318 + }, + { + "path": "multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js", + "sha256": "d5524903f278cb336f69d8d8bd5041952e58147e83d8acd4477982779537e21c", + "language": "JavaScript", + "lines": 430, + "truncated": false, + "block": 9, + "row": 2095 + }, + { + "path": "multiqc/modules/dragen_fastqc/base_metrics.py", + "sha256": "a4ba5e7508c1dd1a83af653839b4967eb01c4d198dd7debd7c20d00287971824", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 9, + "row": 9287 + }, + { + "path": "multiqc/modules/dragen_fastqc/content_metrics.py", + "sha256": "c62dfcd6201d6153652cd0480475d5bed0d8759b66ca4b9ea4978ce014eeb92c", + "language": "Python", + "lines": 273, + "truncated": false, + "block": 9, + "row": 11229 + }, + { + "path": "multiqc/modules/dragen_fastqc/dragen_fastqc.py", + "sha256": "5394f79d5067a46b22bbcbb9f5e26f7f4993f74bbb4fcf46bf38214fb499e718", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 9363 + }, + { + "path": "multiqc/modules/dragen_fastqc/gc_metrics.py", + "sha256": "c97382e5f831b738539fe6fa39ec0f7fe44df740d1f92fe15af903a2aa61224a", + "language": "Python", + "lines": 189, + "truncated": false, + "block": 9, + "row": 10469 + }, + { + "path": "multiqc/modules/dragen_fastqc/read_metrics.py", + "sha256": "52f0a22b634d2c5a92e4ea2ebf01bdb5631a4f8ddb1223494d57ab61e55db501", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 9, + "row": 9800 + }, + { + "path": "multiqc/modules/dragen_fastqc/util.py", + "sha256": "937061af572609a715969eb1671b3643dfafb9446bcfdb641b51da0b0f0078ed", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 8466 + }, + { + "path": "multiqc/modules/eigenstratdatabasetools/__init__.py", + "sha256": "8372530bc029c4f19ad7564a19cb8c51c3b8d54d0693b5234c1574b723b3091d", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6338 + }, + { + "path": "multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py", + "sha256": "5bcfe3ad5a371f8f686881d9735c03f4f390e1499fc685ad6e4b867fe948af6d", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 8736 + }, + { + "path": "multiqc/modules/fastp/__init__.py", + "sha256": "948c256f7480297ecef925e3e6c72503702088283edd6d5e105e36b493f0b398", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6172 + }, + { + "path": "multiqc/modules/fastp/fastp.py", + "sha256": "e5548dd1292be6a084879aa168da678029aaa403d12acf5752fc719e269ef373", + "language": "Python", + "lines": 703, + "truncated": false, + "block": 9, + "row": 12212 + }, + { + "path": "multiqc/modules/fastq_screen/__init__.py", + "sha256": "7ddab78d12db8075159f4da9a8a3f347e98622c9ed3eac1ce22937ee399e5fca", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6312 + }, + { + "path": "multiqc/modules/fastq_screen/fastq_screen.py", + "sha256": "2ddbfe6ba2f60bf43d5f6f3b64525b3edb1a1fd802fce6ef10055c8fca0099bd", + "language": "Python", + "lines": 274, + "truncated": false, + "block": 9, + "row": 11076 + }, + { + "path": "multiqc/modules/fastqc/__init__.py", + "sha256": "0e770c77d227bb8eab8fdf0150977301886e3c6a13675f1a362dda3c5eb3751e", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6187 + }, + { + "path": "multiqc/modules/fastqc/assets/js/multiqc_fastqc.js", + "sha256": "a5047a45d60fcfbc5a8f0a1456b036c46e3017749c5159d28b395b4b4b9d36d8", + "language": "JavaScript", + "lines": 479, + "truncated": false, + "block": 9, + "row": 2099 + }, + { + "path": "multiqc/modules/fastqc/fastqc.py", + "sha256": "9ab5c0abbbb9c4ed99e3f02b8e1c4167331619d545d31487549b89789af4095e", + "language": "Python", + "lines": 1531, + "truncated": false, + "block": 9, + "row": 12586 + }, + { + "path": "multiqc/modules/fastqe/__init__.py", + "sha256": "e34b494a51a4af0d5df455f94765191035b37ee63fdde73db9ce62b79905c1db", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6212 + }, + { + "path": "multiqc/modules/fastqe/fastqe.py", + "sha256": "e774eb4e74cc7c1d4f66a03d2ef080313c9ffc950d27bb4adf0b19964c0b5ca6", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 9, + "row": 9419 + }, + { + "path": "multiqc/modules/featurecounts/__init__.py", + "sha256": "9dcfad688211022cfcff390878272dc4af1ec42e6608008e0c5147dcaa951977", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6320 + }, + { + "path": "multiqc/modules/featurecounts/featurecounts.py", + "sha256": "65012be93571b36689a36e1c2396f6ee82daf08baaf1d125cd7f33b0281ab88b", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 9, + "row": 10160 + }, + { + "path": "multiqc/modules/fgbio/__init__.py", + "sha256": "499701c2862b5ac4051d53df0eeef9d6c91c9907d4a5d2a0bfdef8ab229c1439", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6161 + }, + { + "path": "multiqc/modules/fgbio/error_rate_by_read_position.py", + "sha256": "6fb3ab6aaac77541160b10ab38c00ba090cc637b1b8923bef1f2182f4f1a0c25", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 9, + "row": 10129 + }, + { + "path": "multiqc/modules/fgbio/fgbio.py", + "sha256": "c5000f1d38ae97c320e9a87eb7f918f93a876d5e34743a2a8a88f5220b0a2991", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7911 + }, + { + "path": "multiqc/modules/fgbio/group_reads_by_umi.py", + "sha256": "fb53887f06467872a90e30f1d7fc16d114abc633a0f92c1beb18e4a88dc9a666", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8802 + }, + { + "path": "multiqc/modules/fgumi/__init__.py", + "sha256": "27efab497f601578b71e252e960dc9b2b278053950fdebe3e74e9c2c9d2c58d6", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6158 + }, + { + "path": "multiqc/modules/fgumi/commands.py", + "sha256": "87b5cd018d91e44df63294dbca629adb1d3272f2e51a1e55a28767c38f4fd8d7", + "language": "Python", + "lines": 228, + "truncated": false, + "block": 9, + "row": 10758 + }, + { + "path": "multiqc/modules/fgumi/consensus_families.py", + "sha256": "d0c36131df939dc076e089c398ccbb0f8d3c0164c5093cce7aa224b9c265da85", + "language": "Python", + "lines": 211, + "truncated": false, + "block": 9, + "row": 10870 + }, + { + "path": "multiqc/modules/fgumi/consensus_stats.py", + "sha256": "b8d24cc014d2c821ef88f8f75684bb7804f49b29e05386aaadd05dd6ed33dafa", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 9, + "row": 8842 + }, + { + "path": "multiqc/modules/fgumi/dedup.py", + "sha256": "f63e288cf6420e820d91e4ee017011ae0717bf4d270ee803596661c44a3f6c30", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 9, + "row": 9695 + }, + { + "path": "multiqc/modules/fgumi/family_sizes.py", + "sha256": "c25d0dc93427e8668a0d2f4a024effa1c6d8bcfe8bb186798b7e0e3be53e5c83", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 8200 + }, + { + "path": "multiqc/modules/fgumi/fgumi.py", + "sha256": "eaac8764d377010b3cfae3d53fb3a887dafb3da76d14d106f90a16f60f0c90dc", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 9493 + }, + { + "path": "multiqc/modules/fgumi/grouping.py", + "sha256": "d5d00a7cfea18709694dad0dbd24f8a0103f11df71a59395dccb6ee0ebe14544", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 8631 + }, + { + "path": "multiqc/modules/fgumi/review.py", + "sha256": "5484b5dffbe66bcfcec2300a3de5c47694dec3eda6e5a3452f4f3dfff786e074", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 8511 + }, + { + "path": "multiqc/modules/fgumi/schemas.py", + "sha256": "6d1655d7083741b47d3fa3de709e2a9ab0587d7459a5240e051f5d252fc8dc15", + "language": "Python", + "lines": 330, + "truncated": false, + "block": 9, + "row": 10786 + }, + { + "path": "multiqc/modules/fgumi/tests/conftest.py", + "sha256": "cc694016d7c64e8d0ac595961f8653423b40d8858dc96862b4e9226401b2d87a", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7579 + }, + { + "path": "multiqc/modules/fgumi/tests/test_commands.py", + "sha256": "1c9843c72fb58e459838441fcc24d57583e1b514b112c70c904ec80fa0fb2d9b", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 9, + "row": 9489 + }, + { + "path": "multiqc/modules/fgumi/tests/test_consensus_families.py", + "sha256": "900ca24a6cc9beb74ecc9e1949ee10dc1e8f0c14acf79aaff257a7cb588384a7", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 9804 + }, + { + "path": "multiqc/modules/fgumi/tests/test_consensus_stats.py", + "sha256": "25f43a8aefe90149169ad809130bc8d38e55e997c0935bcfbc009ab02da3c62a", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 8141 + }, + { + "path": "multiqc/modules/fgumi/tests/test_contract.py", + "sha256": "e410d7fadb7eae2e148261830bf6cf2ca8b10c225f27a0edcd581d5725c25de3", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 9475 + }, + { + "path": "multiqc/modules/fgumi/tests/test_dedup.py", + "sha256": "f0f0fe20ff63fdc853e6fd3b9fa83573211839e110f2f1c7100706807d195e95", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 9078 + }, + { + "path": "multiqc/modules/fgumi/tests/test_family_sizes.py", + "sha256": "2b394a77fc295a3d4afadb3f608cb57baf64a0db3de9f69a3364994dfac65ce9", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 9, + "row": 10357 + }, + { + "path": "multiqc/modules/fgumi/tests/test_grouping.py", + "sha256": "c0dd7c64525f65fc9d0ab58bc0aa94434e5fc63ada0c2e91bc8f444bf08e5897", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 7091 + }, + { + "path": "multiqc/modules/fgumi/tests/test_review.py", + "sha256": "7a34cf6eef99d23592aa83f04ed4a64971269ea6a60ad6ae496e6cf37288edf5", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 9, + "row": 6707 + }, + { + "path": "multiqc/modules/fgumi/tests/test_schemas.py", + "sha256": "c841d28a6c4ab9f3e1fefba8735dd1d495d51f3198d2304985365ef53399ef49", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 7843 + }, + { + "path": "multiqc/modules/fgumi/tests/test_umis.py", + "sha256": "91ca8e1e3d183dd1b2043d3babe411e3672126d486648fddcdc553163febdad2", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 9, + "row": 8928 + }, + { + "path": "multiqc/modules/fgumi/tests/test_yields.py", + "sha256": "809d379e3486cdc5809d82a3fd3b54d454bc2d622b65b65546300b984feadff0", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7892 + }, + { + "path": "multiqc/modules/fgumi/umis.py", + "sha256": "92c581b8f180e1cd4a9de0ab464beb8599d16124acb24d8fcadb5f7b7de74519", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 9, + "row": 10203 + }, + { + "path": "multiqc/modules/fgumi/util.py", + "sha256": "32809de139589566b620c8b642ae806d8fc0d0b5d5d72440022b6e694bda7390", + "language": "Python", + "lines": 220, + "truncated": false, + "block": 9, + "row": 10793 + }, + { + "path": "multiqc/modules/fgumi/yields.py", + "sha256": "6bf42acc9436dfdf7b0d66f3996d3b3719cb6ddec4fa61f5f49c5b7f29e064f4", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 9, + "row": 9679 + }, + { + "path": "multiqc/modules/filtlong/__init__.py", + "sha256": "9f7e9c0a814461d114a52c10c961a2cc6a49a3bb1c34cb250d6a49cd111c00a8", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6252 + }, + { + "path": "multiqc/modules/filtlong/filtlong.py", + "sha256": "2770edcac73cbb85181834bbf8677798672b3f5637136510cc062cf44981cafa", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 9, + "row": 9176 + }, + { + "path": "multiqc/modules/flash/__init__.py", + "sha256": "7d9aaa3b0a49ece08a6278bd7216edf284952bd2734d139434110e79fb40b8c5", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6169 + }, + { + "path": "multiqc/modules/flash/flash.py", + "sha256": "a1b543258a982b92532a66c568b5492213b11e50e7f985c63d9218b3416cfdae", + "language": "Python", + "lines": 300, + "truncated": false, + "block": 9, + "row": 10886 + }, + { + "path": "multiqc/modules/flexbar/__init__.py", + "sha256": "bdaea4f075b171d08a44af25154bf8fb93ae575fa9d1dc7704f553abf7531d1b", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6234 + }, + { + "path": "multiqc/modules/flexbar/flexbar.py", + "sha256": "9747ab1eff9c3aca0f9f32c28318ffec421f9f4131547e06541bce6946b36436", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 9, + "row": 9670 + }, + { + "path": "multiqc/modules/freyja/__init__.py", + "sha256": "3bba07976ca260e599e0acdcaf4c7e0084f9c79779e854c335f2046b36998521", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6194 + }, + { + "path": "multiqc/modules/freyja/freyja.py", + "sha256": "c39787c6ca1861864b818174f1d0600ddd9ccda2b6abbe0896dc7fa8e454b86e", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 9, + "row": 9934 + }, + { + "path": "multiqc/modules/ganon/__init__.py", + "sha256": "0f68a02a26a44412be2e0ff7c034eaf838274f1b53b62da65634e0078a874ac6", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6156 + }, + { + "path": "multiqc/modules/ganon/ganon.py", + "sha256": "429d3f0d9adb43b12c8a7df9762e922ea022c288d80545d2ad12849cbbc48143", + "language": "Python", + "lines": 343, + "truncated": false, + "block": 9, + "row": 11377 + }, + { + "path": "multiqc/modules/gatk/__init__.py", + "sha256": "8839085dcfa373092d77f0597110bb1fa3a8e44354d6044f53928226ce0dc240", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6148 + }, + { + "path": "multiqc/modules/gatk/analyze_saturation_mutagenesis.py", + "sha256": "552582dabde1488b3122b6b37a811a4a83c53052b8c730714d398ef5f1308873", + "language": "Python", + "lines": 409, + "truncated": false, + "block": 9, + "row": 11707 + }, + { + "path": "multiqc/modules/gatk/base_recalibrator.py", + "sha256": "a72ae956beeea53caccc25c0f62eebc9946e4ec61ac9f01b0942a4ef59e2114c", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 9, + "row": 10507 + }, + { + "path": "multiqc/modules/gatk/gatk.py", + "sha256": "cba7e430c0a05ecae4dbb47e52e654e48d8dab90511eb5891b3cc9a3e8a1e2db", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 8519 + }, + { + "path": "multiqc/modules/gatk/utils.py", + "sha256": "b4d543b5541fc2b48c5408c197bf6b8e1aafa7aec169aa08ab727556e71001ad", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7537 + }, + { + "path": "multiqc/modules/gatk/varianteval.py", + "sha256": "2e6d2a29fda755e1cf337669778ae981f76cef04c9b7272bc7485d21c1b58033", + "language": "Python", + "lines": 268, + "truncated": false, + "block": 9, + "row": 10882 + }, + { + "path": "multiqc/modules/gffcompare/__init__.py", + "sha256": "a9d6c116dc355ea894f4a956e977f0104e57485bfb01d1f74e694883409336c4", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6293 + }, + { + "path": "multiqc/modules/gffcompare/gffcompare.py", + "sha256": "5cf47e7d358d257527e0934126b303fa94e9e445171b367cb722c4dd96b4de05", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 9, + "row": 11164 + }, + { + "path": "multiqc/modules/glimpse/__init__.py", + "sha256": "fbdd31dad3bafc10800d19ace2f6f1eb6307cbc32417eba17b328b1c7c070bbb", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6236 + }, + { + "path": "multiqc/modules/glimpse/err_grp.py", + "sha256": "2c3f052fa49349a92866bf991a7012e06edc084de3b5bc9246700d3fc15b7bb2", + "language": "Python", + "lines": 220, + "truncated": false, + "block": 9, + "row": 10642 + }, + { + "path": "multiqc/modules/glimpse/err_spl.py", + "sha256": "6b39a6839e8bc7e6ec813bb19c2764009a718a694031d09cce517a949a36429b", + "language": "Python", + "lines": 294, + "truncated": false, + "block": 9, + "row": 11074 + }, + { + "path": "multiqc/modules/glimpse/glimpse.py", + "sha256": "ac823551b108c90aa6a606ed408c376cad9d666f307e740c8c6b245f548813c8", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7551 + }, + { + "path": "multiqc/modules/goleft_indexcov/__init__.py", + "sha256": "772d7a81221e01fccc85dd529a4665ffdec067ee44c56bf5bf03a73735f29dbd", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6329 + }, + { + "path": "multiqc/modules/goleft_indexcov/goleft_indexcov.py", + "sha256": "8f224e035bf37558a508332c48f4efe98582f7db655d90e93bb3cda3a65a8ec1", + "language": "Python", + "lines": 237, + "truncated": false, + "block": 9, + "row": 10859 + }, + { + "path": "multiqc/modules/gopeaks/__init__.py", + "sha256": "ba63e2b2e960f860031ff8d8032ba365207f8f37b386a8bae920567f2f68467a", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6231 + }, + { + "path": "multiqc/modules/gopeaks/gopeaks.py", + "sha256": "b157f037d743498418b1cad3a831f0e88315552ea079c5d3d8c27f2638cba470", + "language": "Python", + "lines": 112, + "truncated": false, + "block": 9, + "row": 8944 + }, + { + "path": "multiqc/modules/gtdbtk/__init__.py", + "sha256": "2958a3c2b01670c921f404cdad3744fc85ddc65627ebf0bcd5103db71802f0fb", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6190 + }, + { + "path": "multiqc/modules/gtdbtk/gtdbtk.py", + "sha256": "4a8316a9f95bba65328b76448e8db3b44462cce2940d3b0c09413b27848ec600", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 9, + "row": 10499 + }, + { + "path": "multiqc/modules/haplocheck/__init__.py", + "sha256": "e60f702b60c14918d53cc4829b080405f92c32ab19177fc3bb724be0008a545e", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6296 + }, + { + "path": "multiqc/modules/haplocheck/haplocheck.py", + "sha256": "9b8660cace54bd5f276e05b7a9901e64778e2e20d54a38304eafb5234fe67dec", + "language": "Python", + "lines": 112, + "truncated": false, + "block": 9, + "row": 9143 + }, + { + "path": "multiqc/modules/happy/__init__.py", + "sha256": "7ac94a63c63db07585a114de3a09a964296930061976ead32f96402dfb369229", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6168 + }, + { + "path": "multiqc/modules/happy/happy.py", + "sha256": "10c4d76547bb1d146b163e0ab396f37c8e92e7ba26101d64c1a9e3316b31c6cf", + "language": "Python", + "lines": 293, + "truncated": false, + "block": 9, + "row": 11165 + }, + { + "path": "multiqc/modules/hicexplorer/__init__.py", + "sha256": "4b5c1df748f1c1c068e5e6f6218ecb478bf3877852d93f6f32ddf99c29e359e8", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6302 + }, + { + "path": "multiqc/modules/hicexplorer/hicexplorer.py", + "sha256": "403fdf28fadd7291bbfc9f2021e6b51c1f9c6f51d3bc706876041cf4d7fea5dc", + "language": "Python", + "lines": 338, + "truncated": false, + "block": 9, + "row": 11373 + }, + { + "path": "multiqc/modules/hicpro/__init__.py", + "sha256": "1ccb001a3c76fd990949cbf7c5ce5dc7b7f8047307cbf0aed3016312944d894f", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6189 + }, + { + "path": "multiqc/modules/hicpro/hicpro.py", + "sha256": "d84ad7a7a14f2830f68df6c7c8cb4a22c32af9bc9bd12b371ed4abcf8de0c44f", + "language": "Python", + "lines": 487, + "truncated": false, + "block": 9, + "row": 11916 + }, + { + "path": "multiqc/modules/hicstuff/__init__.py", + "sha256": "d6c6a0d49b2fde1f8722f359950ce8cffd67476baea595f13622d403687c711f", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6258 + }, + { + "path": "multiqc/modules/hicstuff/hicstuff.py", + "sha256": "b1d7de10cf3f38328751300f3c240cbd75bb3f93cf1d707d0a9261302a924bf6", + "language": "Python", + "lines": 363, + "truncated": false, + "block": 9, + "row": 11469 + }, + { + "path": "multiqc/modules/hicup/__init__.py", + "sha256": "53905bc2d4868d81fcd979a1d82a2cdee4890cb04761a61330d7e46ee3d40628", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6164 + }, + { + "path": "multiqc/modules/hicup/hicup.py", + "sha256": "8fea173f7e0f29e9f94ecb33f993a0aa46929462562695fa19cc35ae2719cac2", + "language": "Python", + "lines": 279, + "truncated": false, + "block": 9, + "row": 11115 + }, + { + "path": "multiqc/modules/hifi_trimmer/__init__.py", + "sha256": "82f017ad2b6558e3c3906589b2a3383c56b877c762ba632ebaab732aae8918c6", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6313 + }, + { + "path": "multiqc/modules/hifi_trimmer/hifi_trimmer.py", + "sha256": "571da5535eb7b3e59df0189df47d4398b3d95662f23de6e59b84915f63f0a0b2", + "language": "Python", + "lines": 293, + "truncated": false, + "block": 9, + "row": 10960 + }, + { + "path": "multiqc/modules/hifiasm/__init__.py", + "sha256": "5bf634386ba6c32f856dca442852f60c9a90d9ddf9709989ce49f2500fd6c600", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6222 + }, + { + "path": "multiqc/modules/hifiasm/hifiasm.py", + "sha256": "483ad0e8d2aebc8a200a587743d85fd4799d7c6c1adee628f4bc4ec3e53b03ee", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 9036 + }, + { + "path": "multiqc/modules/hisat2/__init__.py", + "sha256": "f0a1f9f082f51e864c7e457d95c044a9a4c2f7afd4c76623b60871ddb3b3184c", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6216 + }, + { + "path": "multiqc/modules/hisat2/hisat2.py", + "sha256": "53a5ec5c35ccfcdba2a9e08a2b8d66baebb693f6f26ea6ea415006e739d315d2", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 9, + "row": 10385 + }, + { + "path": "multiqc/modules/homer/__init__.py", + "sha256": "e53b073c57718fcb0810f3021116edd6cb2e05feed4fb5cd3d1d00d29d190f5b", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6179 + }, + { + "path": "multiqc/modules/homer/findpeaks.py", + "sha256": "3e23607c4fe96cc6f1a1d02da7da20fbb9e9d37ab6d1c638777831147b0a1885", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8464 + }, + { + "path": "multiqc/modules/homer/homer.py", + "sha256": "b860775bb5aedc3e80c7e8c822209406097dd3f1520abb9682c2906929f811db", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8395 + }, + { + "path": "multiqc/modules/homer/tagdirectory.py", + "sha256": "aa03d7d307cdf16e1554d46c61c66dcef57cad06e76a48370f8c86c95221fc03", + "language": "Python", + "lines": 480, + "truncated": false, + "block": 9, + "row": 11843 + }, + { + "path": "multiqc/modules/hops/__init__.py", + "sha256": "eb11dcb972bc159934135eb0a52ea9dffc2ce570b37e5aae8fa4e4077070a492", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6153 + }, + { + "path": "multiqc/modules/hops/hops.py", + "sha256": "b6fb10f6587dd91ab9d72309844b38667525c721be8e3f4879f0e3e71259d90f", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 9779 + }, + { + "path": "multiqc/modules/hostile/__init__.py", + "sha256": "03e6324af61608dc1d6000a602b2ac18545c4ba08fab135829ae0a85fb240c27", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6218 + }, + { + "path": "multiqc/modules/hostile/hostile.py", + "sha256": "c3c35233c7294080fc4bca39028aff3bd49fb5731610b48a2d0400f16b109c6b", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 9552 + }, + { + "path": "multiqc/modules/htseq/__init__.py", + "sha256": "59f4eb06714f84fba20ef627a16bcef78b13bd2a9cc4fec87e136a7f06e1f820", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6165 + }, + { + "path": "multiqc/modules/htseq/htseq.py", + "sha256": "5479cfa3973205bb89138d12e1fe83efa42f35a8d386f28f0fb162522f595910", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 9, + "row": 9544 + }, + { + "path": "multiqc/modules/humid/__init__.py", + "sha256": "cb3d059856e1c58b355c39289104f495a7c2f60b54bd9c786a81f4f0bc15e468", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6175 + }, + { + "path": "multiqc/modules/humid/clusters.py", + "sha256": "bdea9ec092cd5861d19e5b5ba854576067f228c0161c2fff5107183e90aaee86", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 7876 + }, + { + "path": "multiqc/modules/humid/counts.py", + "sha256": "502302bd2f360feb39f05379ada8b69af7e24dfa87219f83a20ddf2ab7bac518", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 7897 + }, + { + "path": "multiqc/modules/humid/humid.py", + "sha256": "05d9d314bd02fa50d79dad6c42c1a689861a3b9f2ab89e0632c363e88f764dd7", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7512 + }, + { + "path": "multiqc/modules/humid/neighbours.py", + "sha256": "c308857602b6db43d209aa0ba62d75b83623a1b1e275a2deafc5e64b5e2015d0", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 7912 + }, + { + "path": "multiqc/modules/humid/stats.py", + "sha256": "e7406a8aefafff9a07e6517d59d706356b1a8333e8bf2cfe03d381aa88e96e06", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 9, + "row": 9278 + }, + { + "path": "multiqc/modules/interop/__init__.py", + "sha256": "673df43fd8b375e0c1a335b699fbfa1d3139e42f28c8301b70e0ecf20383ef02", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6223 + }, + { + "path": "multiqc/modules/interop/interop.py", + "sha256": "e5d6e76140dba1aca49d0501ac6ed89740d20e94e2b13d39bf41c8794c8b70b0", + "language": "Python", + "lines": 493, + "truncated": false, + "block": 9, + "row": 11817 + }, + { + "path": "multiqc/modules/isoseq/__init__.py", + "sha256": "94010b4c5aa6dbd6f3c30ae2d4f698809758a189bad865a68f5a6050f4e2bae0", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6202 + }, + { + "path": "multiqc/modules/isoseq/isoseq.py", + "sha256": "d345f9e933079434431995b0e6597965323927a45c9f2c7b7af90b113af59cee", + "language": "Python", + "lines": 261, + "truncated": false, + "block": 9, + "row": 11036 + }, + { + "path": "multiqc/modules/ivar/__init__.py", + "sha256": "8eee0089ac0aee75d940c4072ccfef83d56d43f509efbb59cdbe5ea904e6ecb7", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6149 + }, + { + "path": "multiqc/modules/ivar/ivar.py", + "sha256": "cf33261a84486b41d046ffc88f3a170f2ade3b28185c5a7051b7933293d6bcbe", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 9, + "row": 10175 + }, + { + "path": "multiqc/modules/jcvi/__init__.py", + "sha256": "47029115891e3abee5af59bbf8c8bc0d34fd698cefce68216fecd20f063be315", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6144 + }, + { + "path": "multiqc/modules/jcvi/jcvi.py", + "sha256": "ac97ced5ed68997c9e610b7a994a9565256cea8a8226dea855a490188c0329da", + "language": "Python", + "lines": 373, + "truncated": false, + "block": 9, + "row": 11363 + }, + { + "path": "multiqc/modules/jellyfish/__init__.py", + "sha256": "589dc0b30bc96fb96c8f97daa158fc3b5d6be179356316fd53225b2a367e8877", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6276 + }, + { + "path": "multiqc/modules/jellyfish/jellyfish.py", + "sha256": "dc8452d6ffb8fda9402722ada829644527165b96be823dbe63b1d2740638ca1a", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 9, + "row": 9546 + }, + { + "path": "multiqc/modules/kaiju/__init__.py", + "sha256": "03e2273c6b29df3e0c02cd69dd36602caf4cc8ae59e2936887da8f503ff77348", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6154 + }, + { + "path": "multiqc/modules/kaiju/kaiju.py", + "sha256": "f54fcc5901c7138310efce7566698f792d4a86727dbc5c17fab99bf01d73445c", + "language": "Python", + "lines": 301, + "truncated": false, + "block": 9, + "row": 11303 + }, + { + "path": "multiqc/modules/kallisto/__init__.py", + "sha256": "c8411c3c0fae9e49264e3c0f6b5d405a324cbe161e56b1b48c4f1d1c43b1fae7", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6255 + }, + { + "path": "multiqc/modules/kallisto/kallisto.py", + "sha256": "65d7764f5c351aaaab0b5b517979eee203ef15c3d29cb7b45dd6012273787ce1", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 9830 + }, + { + "path": "multiqc/modules/kat/__init__.py", + "sha256": "d94b22118386309c11290305ed809a3328faf7657df690c8baffc2d6b1ab2ac2", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6142 + }, + { + "path": "multiqc/modules/kat/kat.py", + "sha256": "2000197eafbb7dca14121e7891ba1f948839ac27050f50ebbf6d6a33e8e4a971", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 9303 + }, + { + "path": "multiqc/modules/kraken/__init__.py", + "sha256": "a1d5f49bfcff20da46d1b0b2856698eca6aa6477aae5c7914ba0aa76716076ac", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6203 + }, + { + "path": "multiqc/modules/kraken/kraken.py", + "sha256": "4e9e78254cdf2b1b05e459a9816641ef5c8d7b9cda4f4288aa1a6a6e4a6405af", + "language": "Python", + "lines": 470, + "truncated": false, + "block": 9, + "row": 11876 + }, + { + "path": "multiqc/modules/leehom/__init__.py", + "sha256": "6951ce8363fe460f6eeafb6dd36b30825f9eff5dedf915bc7f0f5c83a43b29e0", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6199 + }, + { + "path": "multiqc/modules/leehom/leehom.py", + "sha256": "e3be8fd7460e964e12147ed2e206b255d8283e14c6e2d83eef9bdf3b77307ed6", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8947 + }, + { + "path": "multiqc/modules/librarian/__init__.py", + "sha256": "05bab0f8ea28cec775016ecca864a441e578dd6af2333734bfa07046f9a73d22", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6268 + }, + { + "path": "multiqc/modules/librarian/librarian.py", + "sha256": "c17ca11b8768e330d42a2b9051165b0b9b8e8a7d62ddfc8b5d514e73015d58d0", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 9, + "row": 10307 + }, + { + "path": "multiqc/modules/lima/__init__.py", + "sha256": "aa507f9777bf7f63e6d9ff12a56fa5a15ae8efa72631c1b89cca22e122fe0b94", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6151 + }, + { + "path": "multiqc/modules/lima/lima.py", + "sha256": "73976ae8cbffb66e77995e8169351364b720c9c181e3dd1b80be89406e8c3e79", + "language": "Python", + "lines": 366, + "truncated": false, + "block": 9, + "row": 11436 + }, + { + "path": "multiqc/modules/longranger/__init__.py", + "sha256": "254bf215cf94f33d8f9f245b1e1ab60df9c438d8c6db3b17f49d8fa27c0b25cc", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6290 + }, + { + "path": "multiqc/modules/longranger/longranger.py", + "sha256": "cded70c093bb981a4d946bd07a276d053ad125c2a607f85131b83fc6781779f5", + "language": "Python", + "lines": 427, + "truncated": false, + "block": 9, + "row": 11777 + }, + { + "path": "multiqc/modules/macs2/__init__.py", + "sha256": "44686fab65c8a12fce0dc158f350cdf9e6b3834275a36fb489c1ee772a7a9448", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6160 + }, + { + "path": "multiqc/modules/macs2/macs2.py", + "sha256": "0ac48826f6d19a451832b45e70605855510fc49cc8d90fa9c96fc10f9154c14f", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 9, + "row": 10084 + }, + { + "path": "multiqc/modules/malt/__init__.py", + "sha256": "9e8f6a789f3afb29b9b126a480b71d9bffd261418a4c2570f8fa7757da75edf0", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6150 + }, + { + "path": "multiqc/modules/malt/malt.py", + "sha256": "a9883e1012663ef703b7080d2b76ac8a002451bcf2ac3142705894170916af4e", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 9, + "row": 10321 + }, + { + "path": "multiqc/modules/mapdamage/__init__.py", + "sha256": "24931e8bd9b1f919d04949c184c502e7126b9d7f2543930d4e2dd1fe0ded32bd", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6269 + }, + { + "path": "multiqc/modules/mapdamage/mapdamage.py", + "sha256": "468b7bba709d74da451a9f010c86bed004209a3a00d5950eb8bc971dba9527fd", + "language": "Python", + "lines": 291, + "truncated": false, + "block": 9, + "row": 11206 + }, + { + "path": "multiqc/modules/megahit/__init__.py", + "sha256": "babf0dd7b36c3c737eb5cb248cb02beacb6048289ac23d87a9a4586e09471c1b", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6233 + }, + { + "path": "multiqc/modules/megahit/megahit.py", + "sha256": "8af8f9c7c0a26946557d67e60dffedb48f7076a37f175622df1ba48dec3b81db", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 9759 + }, + { + "path": "multiqc/modules/metaphlan/__init__.py", + "sha256": "d038918ae48f8010c9032ceb27482a32874779151519b4b765bfc5c64ee49f01", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6283 + }, + { + "path": "multiqc/modules/metaphlan/metaphlan.py", + "sha256": "f6d2845cac1b1b8120cf6eb8208197545227182914fc877e1995adafce77f8f0", + "language": "Python", + "lines": 341, + "truncated": false, + "block": 9, + "row": 11330 + }, + { + "path": "multiqc/modules/methurator/__init__.py", + "sha256": "1b17afd6a235cdfd3b5751dfb04aa7f4bb10c993b8dbf0f88dd1dff0fda46694", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6288 + }, + { + "path": "multiqc/modules/methurator/methurator.py", + "sha256": "4ad784858bf7c1869592b04ce05b1a81ff4976165f186a9629bef4c8e2c3f1fa", + "language": "Python", + "lines": 370, + "truncated": false, + "block": 9, + "row": 11559 + }, + { + "path": "multiqc/modules/methylqa/__init__.py", + "sha256": "2c9605397236bdefce606ad8c0c7d2b228ea84111336194ced72b2701cf6dfa9", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6240 + }, + { + "path": "multiqc/modules/methylqa/methylqa.py", + "sha256": "cf5efc459589aa5062253e099239055b571562f387d2ca2686e2588cf77be206", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9769 + }, + { + "path": "multiqc/modules/mgikit/__init__.py", + "sha256": "9294f5caa97de399d77ca4608a317a90949b373c406cd6e2533946c299d32b18", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6201 + }, + { + "path": "multiqc/modules/mgikit/mgikit.py", + "sha256": "fa9a06b8df0251e1af65642467b6d347e1ebb0c5b5a3f7def33e2fc4d33999ed", + "language": "Python", + "lines": 507, + "truncated": false, + "block": 9, + "row": 11911 + }, + { + "path": "multiqc/modules/mgnifam/__init__.py", + "sha256": "3a0323ca17f55a696078dfb6d59ca7351deec42c692cbab1f40bac1a2eb45512", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6220 + }, + { + "path": "multiqc/modules/mgnifam/mgnifam.py", + "sha256": "35f5767e03024836be5b815c8875184c62718f34706f312fecd4dd43502c28fc", + "language": "Python", + "lines": 330, + "truncated": false, + "block": 9, + "row": 11445 + }, + { + "path": "multiqc/modules/mgnifam/tests/test_mgnifam.py", + "sha256": "454c47b00801ecc70852244aaa59334ecd7e1885c30c2748944752af485b29b6", + "language": "Python", + "lines": 163, + "truncated": false, + "block": 9, + "row": 10014 + }, + { + "path": "multiqc/modules/minionqc/__init__.py", + "sha256": "3f5f86ccb50e7e6230f47e2bcc93bd4b4dd76785b248eceb7c46f626520566db", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6241 + }, + { + "path": "multiqc/modules/minionqc/minionqc.py", + "sha256": "a5f88aeb53c80e573130a6dc20eca5ead8e692db271aa1ca4c2b69eb24c54d3d", + "language": "Python", + "lines": 263, + "truncated": false, + "block": 9, + "row": 10776 + }, + { + "path": "multiqc/modules/mirtop/__init__.py", + "sha256": "01d1eff0a5bb235bf4c22236e1a938a73bc96bf5d7eabbb7c1c20489cceacac1", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6183 + }, + { + "path": "multiqc/modules/mirtop/mirtop.py", + "sha256": "d875a83d84d782e739d29a875e312f6acc8c68277cf9eb1a445147168caaab39", + "language": "Python", + "lines": 260, + "truncated": false, + "block": 9, + "row": 10965 + }, + { + "path": "multiqc/modules/mirtrace/__init__.py", + "sha256": "f1940d30e2769653cc2ee989ce58ec951175b35d180d39388ff8d57735428bdd", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6263 + }, + { + "path": "multiqc/modules/mirtrace/mirtrace.py", + "sha256": "516dad69e00b9238102321bc1e82e9a7b71a992fd36fb91efc27a0cc2ff920a2", + "language": "Python", + "lines": 369, + "truncated": false, + "block": 9, + "row": 11416 + }, + { + "path": "multiqc/modules/mosaicatcher/__init__.py", + "sha256": "d99f1876c10f5b482d9532375cc32269784075665ad23a4339889d65213cf527", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6317 + }, + { + "path": "multiqc/modules/mosaicatcher/mosaicatcher.py", + "sha256": "717b2ebc5754967f0f280ae84cee6676e8583f36a4f0a9a9cc998b3f0fc80121", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 9, + "row": 9877 + }, + { + "path": "multiqc/modules/mosdepth/__init__.py", + "sha256": "81b35d1494572736ae5c6d62056308a7b2a0626ae7d0b5aeeda393c657543f54", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6249 + }, + { + "path": "multiqc/modules/mosdepth/mosdepth.py", + "sha256": "5275d4b23fbbb28358313581e22dad28b1b9e6f6a693d81d61531e7ad54794a3", + "language": "Python", + "lines": 609, + "truncated": false, + "block": 9, + "row": 12128 + }, + { + "path": "multiqc/modules/mosdepth/tests/test_gen_stats.py", + "sha256": "218a6b002925ceaa9aa13c6bf02dbf54bcdcac24887e7fdc7e87696cbc7d323c", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6641 + }, + { + "path": "multiqc/modules/mosdepth/tests/test_xy_coverage.py", + "sha256": "558147ba44c9b76043c4789da8d9d0ef5f8c3695805d6902fd6349feea1b49d5", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 7993 + }, + { + "path": "multiqc/modules/motus/__init__.py", + "sha256": "1c94714a13aa654c75283d2169ed56578b15435520be9f2724fdb795e7489e57", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6157 + }, + { + "path": "multiqc/modules/motus/motus.py", + "sha256": "ed31986d0b82d90e25e1d04d464253393515b14e6bf55050428d5ff11b4d1f4d", + "language": "Python", + "lines": 252, + "truncated": false, + "block": 9, + "row": 10916 + }, + { + "path": "multiqc/modules/mtnucratio/__init__.py", + "sha256": "aab1b5ad67437936436de2c92b463cc1f4e9a45b4b4f321286865900abf450cd", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6294 + }, + { + "path": "multiqc/modules/mtnucratio/mtnucratio.py", + "sha256": "3bdeba54b04bfe773618dd00a5ae297da53d8cd12f5da8226275a123ce459548", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 9138 + }, + { + "path": "multiqc/modules/multivcfanalyzer/__init__.py", + "sha256": "6e5de5dbf3587a8267148ce824d90cdb133b0fcf680ae9525ded97a0de726876", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6333 + }, + { + "path": "multiqc/modules/multivcfanalyzer/multivcfanalyzer.py", + "sha256": "2ee222582cb3a578bbe4133327416dca3242ecc936fd2835b6707d9f6cbba125", + "language": "Python", + "lines": 290, + "truncated": false, + "block": 9, + "row": 11147 + }, + { + "path": "multiqc/modules/nanoq/__init__.py", + "sha256": "9801ed526cd5e6bae115bab20961335344bd81a463b83646700b1beeb72c4fc9", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6173 + }, + { + "path": "multiqc/modules/nanoq/nanoq.py", + "sha256": "c082be641b0693d46b455b7b9e1bf24b043589ea1bb03b73042495e278b6ccd2", + "language": "Python", + "lines": 321, + "truncated": false, + "block": 9, + "row": 11069 + }, + { + "path": "multiqc/modules/nanostat/__init__.py", + "sha256": "42c8a6ad38f2da1ed9f78bcac348079bcf540b5c66387a031d64303413d8da98", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6244 + }, + { + "path": "multiqc/modules/nanostat/nanostat.py", + "sha256": "51efce1dd0f7200f81acaf74325c499b268c45ff9f3a527f25bdd2d8b2a3d9af", + "language": "Python", + "lines": 486, + "truncated": false, + "block": 9, + "row": 11824 + }, + { + "path": "multiqc/modules/nextclade/__init__.py", + "sha256": "76717bc7a4ce2ae44b4f3608d5d028a35ee4e3973e82c31e14dbae25e0fd9e5a", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6278 + }, + { + "path": "multiqc/modules/nextclade/nextclade.py", + "sha256": "7ed62f83f8f1b61877969ea8bbd27212fbeee45a898fb7d2c3d119601ffefbc0", + "language": "Python", + "lines": 321, + "truncated": false, + "block": 9, + "row": 11189 + }, + { + "path": "multiqc/modules/ngsbits/__init__.py", + "sha256": "88ce84c9f017d3d5bf1e41dfd3e0528cff89630a9ba6445306ac9c250718d1d0", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6343 + }, + { + "path": "multiqc/modules/ngsbits/mappingqc.py", + "sha256": "8ac3d88ba59890cabc6120eeddfc0291606f9703f49dc204f8a2fba62837bd1d", + "language": "Python", + "lines": 196, + "truncated": false, + "block": 9, + "row": 9941 + }, + { + "path": "multiqc/modules/ngsbits/ngsbits.py", + "sha256": "6a603a8c3240303c4857f6af7f10064b3b15db98165ddcec72c8188f1f33f877", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7900 + }, + { + "path": "multiqc/modules/ngsbits/readqc.py", + "sha256": "f0954577dbcfff1444f2ca4f0b91b0114cb7d73a216b884f95c26d111b9634c6", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 9, + "row": 9592 + }, + { + "path": "multiqc/modules/ngsbits/samplegender.py", + "sha256": "cbc95483caab3d41b9d6858066f812f23fc864b361a693312e77580b559315de", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 9, + "row": 8813 + }, + { + "path": "multiqc/modules/ngsbits/utils.py", + "sha256": "621b8d56db68860e03f294019d0d9cc25018d6450c263f3ca5817ce928ec319a", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 7118 + }, + { + "path": "multiqc/modules/ngsderive/__init__.py", + "sha256": "c19e9c1cdc8d7ba6af8e7b42e679aa35bd54b7db07c0f8e480f306ae4a5cb67a", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6282 + }, + { + "path": "multiqc/modules/ngsderive/ngsderive.py", + "sha256": "0a1578ef8df19da3e437b1cd3946a0fe1a5ef036ec0fd8ba8629e14598373018", + "language": "Python", + "lines": 474, + "truncated": false, + "block": 9, + "row": 11737 + }, + { + "path": "multiqc/modules/nonpareil/__init__.py", + "sha256": "e711537cdcad9e7895e3b89f8ae9bc90d3c04d38162416fd4c1fdf362e717b69", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6284 + }, + { + "path": "multiqc/modules/nonpareil/nonpareil.py", + "sha256": "89ab7794a3e3e7bd761213de57d3fc4a56f4ffeb508defd6ab41501a88428862", + "language": "Python", + "lines": 404, + "truncated": false, + "block": 9, + "row": 11595 + }, + { + "path": "multiqc/modules/odgi/__init__.py", + "sha256": "dbad5332b7235a028527764d39cce032f0b3a02a5aa734d7d3875e18a4175204", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6152 + }, + { + "path": "multiqc/modules/odgi/odgi.py", + "sha256": "47626e8156090d7f43dfaae36f695fac44cc5830deca7ddfb09a71e19faca866", + "language": "Python", + "lines": 470, + "truncated": false, + "block": 9, + "row": 11654 + }, + { + "path": "multiqc/modules/optitype/__init__.py", + "sha256": "a6032707d14e593e9003a307c54e2080e1704ae179bdb492b953eb3cfb35571e", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6253 + }, + { + "path": "multiqc/modules/optitype/optitype.py", + "sha256": "4e5595ce629db7ce8f83885bd39a32f790947ab077dc4b033dcf7f9758e14a4f", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 9, + "row": 9450 + }, + { + "path": "multiqc/modules/pairtools/__init__.py", + "sha256": "7d47e9f18fe7a39dee51b6b40b950f0b1e8c7c7928d06bbb51e2f4580a83b317", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6280 + }, + { + "path": "multiqc/modules/pairtools/pairtools.py", + "sha256": "e537ecb64dffe34ad07a83b8bab06d1f0a76b8a50c7fca99578fb4523997218f", + "language": "Python", + "lines": 346, + "truncated": false, + "block": 9, + "row": 11515 + }, + { + "path": "multiqc/modules/pairtools/utils.py", + "sha256": "3cc043931f77ce5e04d198666086cf369b2120973c25bc47f7eed593aaf9883e", + "language": "Python", + "lines": 276, + "truncated": false, + "block": 9, + "row": 11039 + }, + { + "path": "multiqc/modules/pangolin/__init__.py", + "sha256": "d0db23a696e6889e75b8c336382ad14b91972b7f4974118624a6002bea506125", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6256 + }, + { + "path": "multiqc/modules/pangolin/pangolin.py", + "sha256": "bf63ea1e9ccd4b20dffa29e9e74d5a4fbc2318fa21bfc39b62f71605927d5581", + "language": "Python", + "lines": 259, + "truncated": false, + "block": 9, + "row": 11141 + }, + { + "path": "multiqc/modules/pbmarkdup/__init__.py", + "sha256": "eca5f338a1ce599e6feb7c2dbf1325ba848eab7751048e8ce8079d5e52a99069", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6285 + }, + { + "path": "multiqc/modules/pbmarkdup/pbmarkdup.py", + "sha256": "8d0306afcc1ddfcd5a7789226639096eda6939dc3fb77580efdee480443d4069", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 9, + "row": 9520 + }, + { + "path": "multiqc/modules/peddy/__init__.py", + "sha256": "dd52ef3f855edd7e4a5e5838ebe3b804df193314c0275e8dbca8ef4c2111642c", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6178 + }, + { + "path": "multiqc/modules/peddy/peddy.py", + "sha256": "5fb62e90e08126154c5dc66b3e3b52526638a688329f0dc13d884b1c2e7ff232", + "language": "Python", + "lines": 348, + "truncated": false, + "block": 9, + "row": 11314 + }, + { + "path": "multiqc/modules/percolator/__init__.py", + "sha256": "2386401a17aaccdd3077530fa3f2ac5028742b6d58af69596eabf49987b4803e", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6289 + }, + { + "path": "multiqc/modules/percolator/percolator.py", + "sha256": "58a0a0e023af0fd99fc2c2a81c3ad6b0a6636c950664ff0927d63df1906e5cda", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 9565 + }, + { + "path": "multiqc/modules/phantompeakqualtools/__init__.py", + "sha256": "65346b6e848da02c671c4029e6ad00b46a2f5521eddc18f69e53d4ea76ee1d0d", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6336 + }, + { + "path": "multiqc/modules/phantompeakqualtools/phantompeakqualtools.py", + "sha256": "b0d00d2c827c77ff5a97454e4a6363e62d43838c7203ab3bef7255db58ee7eee", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 9, + "row": 9043 + }, + { + "path": "multiqc/modules/picard/AlignmentSummaryMetrics.py", + "sha256": "60d623ad87f136bc16fe099fe59055931e6a2d67cc610ddd2d2743f5bf6e4269", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 9, + "row": 9796 + }, + { + "path": "multiqc/modules/picard/BaseDistributionByCycleMetrics.py", + "sha256": "675758c1675ef298fb2ef8606edddf21a0b10428e6b31d596172ce2cc1a02217", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 9, + "row": 10020 + }, + { + "path": "multiqc/modules/picard/CrosscheckFingerprints.py", + "sha256": "d1be4b5a37308ae469c436c964954357dc204b217bdcf2b831cc43e0971760a6", + "language": "Python", + "lines": 390, + "truncated": false, + "block": 9, + "row": 11474 + }, + { + "path": "multiqc/modules/picard/ExtractIlluminaBarcodes.py", + "sha256": "4a6d378930ffea740e2152a11c290e47b2e8e0aaf03430ae17afb61ea146fdbc", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 9, + "row": 10140 + }, + { + "path": "multiqc/modules/picard/GcBiasMetrics.py", + "sha256": "4fedb4c8a404e891c72e98cdcb9a4b1a694462f1e378e411f7e2711f9883b37b", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 9, + "row": 9719 + }, + { + "path": "multiqc/modules/picard/HsMetrics.py", + "sha256": "df95406609bdf79e3523df2ba02305625a82d57f9283485de42006b6cced9084", + "language": "Python", + "lines": 439, + "truncated": false, + "block": 9, + "row": 11830 + }, + { + "path": "multiqc/modules/picard/IlluminaBasecallingMetrics.py", + "sha256": "b909e1ed5dbf7bcb17692171704a566064d1e6b60918ea7b2118cfccd845acb3", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9478 + }, + { + "path": "multiqc/modules/picard/IlluminaLaneMetrics.py", + "sha256": "2820379bbdd920efe5e36b1f6c1c7e36e37af9fa5bb2a5dece79606fa3c1238d", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 9, + "row": 9295 + }, + { + "path": "multiqc/modules/picard/InsertSizeMetrics.py", + "sha256": "c5bbd3a72f9ffb455f7d028de06ec85cb921c0e88859f314add347ba92e5c62c", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 9, + "row": 10464 + }, + { + "path": "multiqc/modules/picard/MarkDuplicates.py", + "sha256": "81b87b740f2de721dd5cd18de932770db3e338904a26129a21b24429889fd422", + "language": "Python", + "lines": 325, + "truncated": false, + "block": 9, + "row": 11155 + }, + { + "path": "multiqc/modules/picard/MarkIlluminaAdapters.py", + "sha256": "c8c935cf0af30c8749ae6b7e807dae9e1734de6ebfb48ce8967550a573456d2c", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 7914 + }, + { + "path": "multiqc/modules/picard/OxoGMetrics.py", + "sha256": "548dbf8a4d48bdac840f11c17265656d085056b597db236d2d7af4cb7fd4998c", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 8958 + }, + { + "path": "multiqc/modules/picard/QualityByCycleMetrics.py", + "sha256": "0ab697bf5536701ab78a37dc2c7a683116cfacbd1659835013f3181df79ef343", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 9, + "row": 9972 + }, + { + "path": "multiqc/modules/picard/QualityScoreDistributionMetrics.py", + "sha256": "eb0663eee17cc11d505c04aa8174f76ac3e8f859e372a8cdb5141107dc119bb5", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 7731 + }, + { + "path": "multiqc/modules/picard/QualityYieldMetrics.py", + "sha256": "b0fce47158b99ab395acc085d892a4ea56fcabea9f8a884e059552737e350ab6", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 9, + "row": 8858 + }, + { + "path": "multiqc/modules/picard/RnaSeqMetrics.py", + "sha256": "4436513ff96caa0d7c6691c105dfbb48c61057f4bc2a6b1462e4d41eb9fba690", + "language": "Python", + "lines": 213, + "truncated": false, + "block": 9, + "row": 10441 + }, + { + "path": "multiqc/modules/picard/RrbsSummaryMetrics.py", + "sha256": "efec31d405b9689470570e49e666eb90c79f29494da57adf1478a51e9770be87", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 9, + "row": 9857 + }, + { + "path": "multiqc/modules/picard/TargetedPcrMetrics.py", + "sha256": "9cf894d735efeb0f7b553cd81520e24be2996743af2747b7f0d744233fd6ec43", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 9677 + }, + { + "path": "multiqc/modules/picard/ValidateSamFile.py", + "sha256": "ca0ef6617963af529dfea0a69b86cd8f4d7398d1f6e90ee27ea66264b9e8e53a", + "language": "Python", + "lines": 345, + "truncated": false, + "block": 9, + "row": 11381 + }, + { + "path": "multiqc/modules/picard/VariantCallingMetrics.py", + "sha256": "b0f88e9bd4ea93b882d1098c3126e7a6dd3694908d77fdb6547e59b97da3fbd6", + "language": "Python", + "lines": 406, + "truncated": false, + "block": 9, + "row": 11485 + }, + { + "path": "multiqc/modules/picard/WgsMetrics.py", + "sha256": "e0ba52e2989deff03fda2aebc8bbb2f6d2623935ea272dee5c5a56de8726856e", + "language": "Python", + "lines": 240, + "truncated": false, + "block": 9, + "row": 10713 + }, + { + "path": "multiqc/modules/picard/__init__.py", + "sha256": "0aefae519b02ede1d3ef239207e40cd9a2a45ae5f0bdf8eea22f5e1e3fde1952", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6186 + }, + { + "path": "multiqc/modules/picard/picard.py", + "sha256": "b9e452f8b57765b5605418fa67be137726084dfeb675441607a49e76a2802710", + "language": "Python", + "lines": 312, + "truncated": false, + "block": 9, + "row": 11003 + }, + { + "path": "multiqc/modules/picard/tests/test_picard.py", + "sha256": "380278ff6912d49b58cb498ac671393883e7caead612939c8ed4479ac6507d9c", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7943 + }, + { + "path": "multiqc/modules/picard/util.py", + "sha256": "659ce95480341ef951b88945b000dfd89111663266df3878c648a58ae3310f1d", + "language": "Python", + "lines": 190, + "truncated": false, + "block": 9, + "row": 10150 + }, + { + "path": "multiqc/modules/porechop/__init__.py", + "sha256": "0f4df4e9ae2a37a3431fe81ab3eb8b0ad72e3aa8f3629cd65edc1c88a6e35e97", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6237 + }, + { + "path": "multiqc/modules/porechop/porechop.py", + "sha256": "26e52b6db3dcc8593537b42868ffe7ac4a1a85209a9ef6d0b51532db6596eed7", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 9, + "row": 11212 + }, + { + "path": "multiqc/modules/preseq/__init__.py", + "sha256": "a4c5a232828a4ac2a63d4f58d937221c8f89ffd2dfb2759921c2a1de696f3ec8", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6204 + }, + { + "path": "multiqc/modules/preseq/preseq.py", + "sha256": "a719e7f5a443a672360328200d2e16722b9b0bbdedd8f819baec5590f878f61c", + "language": "Python", + "lines": 489, + "truncated": false, + "block": 9, + "row": 11807 + }, + { + "path": "multiqc/modules/prinseqplusplus/__init__.py", + "sha256": "baa6e1fac95e00356d052f1e60731aa86a7b148c2910e4462f002ccda663e550", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6331 + }, + { + "path": "multiqc/modules/prinseqplusplus/prinseqplusplus.py", + "sha256": "159f5b5696c628ca7f02aace8a3dda7fb16c37bd21a4ac5b41638541dfab7252", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 9, + "row": 9893 + }, + { + "path": "multiqc/modules/prokka/__init__.py", + "sha256": "667a2f92d8c6168b3b57d2b59254aab46974fc12b840bb48ba1f318ebeff90e9", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6198 + }, + { + "path": "multiqc/modules/prokka/prokka.py", + "sha256": "31f6c2f6a37cf1bf224d7c36e7ac845dc56168fba47b854591351419f1b92096", + "language": "Python", + "lines": 249, + "truncated": false, + "block": 9, + "row": 10652 + }, + { + "path": "multiqc/modules/purple/__init__.py", + "sha256": "910dfda4d97aa5aea428562333be44fdb35fa3e79e16a5595e726072431fdc82", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6200 + }, + { + "path": "multiqc/modules/purple/purple.py", + "sha256": "c3cce5fc4adfe33016b01c975dd71d100b6df03ff03348352ff18f74eddb635b", + "language": "Python", + "lines": 225, + "truncated": false, + "block": 9, + "row": 10725 + }, + { + "path": "multiqc/modules/pychopper/__init__.py", + "sha256": "2647ff0346f76a8a5047bf5a6989c7b84dddcda9dbdc2181a8014a2106995494", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6270 + }, + { + "path": "multiqc/modules/pychopper/pychopper.py", + "sha256": "fb2b68d0f0015dd179243022c69bb60e03d750f5d018e629b94b20c3c5ead3b3", + "language": "Python", + "lines": 200, + "truncated": false, + "block": 9, + "row": 10303 + }, + { + "path": "multiqc/modules/pycoqc/__init__.py", + "sha256": "edcb3f27fcf455baa594f61300f3165d1bddd802c4ae895aebde51b307e1996d", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6215 + }, + { + "path": "multiqc/modules/pycoqc/pycoqc.py", + "sha256": "b77d27f96503bd3f00eea8467aeb860a3400cac02fd0f304320340ea072cba14", + "language": "Python", + "lines": 325, + "truncated": false, + "block": 9, + "row": 11310 + }, + { + "path": "multiqc/modules/qc3C/__init__.py", + "sha256": "64a29924d98e8e2310153763821d4dd28dfd4bc0ffdaefcc3d4866e37e81f88a", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6146 + }, + { + "path": "multiqc/modules/qc3C/qc3C.py", + "sha256": "3c36651a36b86c7b16cca0b30b5770b755b30e2fd477f00105466de965b87260", + "language": "Python", + "lines": 1025, + "truncated": false, + "block": 9, + "row": 12455 + }, + { + "path": "multiqc/modules/qorts/__init__.py", + "sha256": "f7123efa513c777c3d337dfb9528e7c3cf27bd0eacc8094a033924b49c9f68cc", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6182 + }, + { + "path": "multiqc/modules/qorts/qorts.py", + "sha256": "9a31993b4707430a6fc31230d1bd72bd6576aee957e6e8034c594d60de0164aa", + "language": "Python", + "lines": 315, + "truncated": false, + "block": 9, + "row": 11475 + }, + { + "path": "multiqc/modules/qualimap/QM_BamQC.py", + "sha256": "67ffbf7cbb201036a288835203365e918799819d4c588b043f36b6f4cabeed5e", + "language": "Python", + "lines": 765, + "truncated": false, + "block": 9, + "row": 12274 + }, + { + "path": "multiqc/modules/qualimap/QM_RNASeq.py", + "sha256": "5f3d87e0ea5a06641bf8a4058a518c8d43b782d16e7419259871e4cb8dbac3a8", + "language": "Python", + "lines": 301, + "truncated": false, + "block": 9, + "row": 11307 + }, + { + "path": "multiqc/modules/qualimap/__init__.py", + "sha256": "ad8a453a202c40dc868ba29dcae208b9af4c8532d429324b915e51d3df04d92c", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 9, + "row": 9156 + }, + { + "path": "multiqc/modules/qualimap/qualimap.py", + "sha256": "714105637d8fba934e9b7a7a8dd49314efd971e6fe707b13c06bd55985a77808", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 8377 + }, + { + "path": "multiqc/modules/quast/__init__.py", + "sha256": "d8de781a4a29a999d753a88ab045cf4d9bc7772d02213cb891b675753109f7fd", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6177 + }, + { + "path": "multiqc/modules/quast/quast.py", + "sha256": "4abff399a0b7e3fb3fe6d7cfbddb194182c4ecfcdb676a9d0182de40ced6103d", + "language": "Python", + "lines": 409, + "truncated": false, + "block": 9, + "row": 11661 + }, + { + "path": "multiqc/modules/ribodetector/__init__.py", + "sha256": "d6ebbf102d5f398c361882e016a1a4bd7f4877126794968ad6ce1f6c895c12f6", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6316 + }, + { + "path": "multiqc/modules/ribodetector/ribodetector.py", + "sha256": "321b94851bf63040d81e3f0210d0d9d986244430116b662edcf3da4d4c708ce3", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 9, + "row": 9836 + }, + { + "path": "multiqc/modules/ribotish/__init__.py", + "sha256": "72ddef87493cd5d588bfda9c956156f0d32a4f39ec8ca6868818ee0a21b39c4e", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6248 + }, + { + "path": "multiqc/modules/ribotish/ribotish.py", + "sha256": "1fffd248df2488026967960647abb98c10000d0da9357e07b8cb92976ab1563d", + "language": "Python", + "lines": 479, + "truncated": false, + "block": 9, + "row": 11806 + }, + { + "path": "multiqc/modules/ribotish/tests/test_ribotish.py", + "sha256": "a7bd4eba4d6e0ee22487ccd2be5df11ee36cc9a6b0d8600d07cd8e39d6dee46e", + "language": "Python", + "lines": 214, + "truncated": false, + "block": 9, + "row": 9932 + }, + { + "path": "multiqc/modules/ribowaltz/__init__.py", + "sha256": "4c1ad4a33fe4fb8ead16bc1c1f8cbf1dba43841bd196733da53013d43de60183", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6274 + }, + { + "path": "multiqc/modules/ribowaltz/ribowaltz.py", + "sha256": "a6e82943cf05283f54c73e7927906698875c385ca95b1e3f9c17e354da0c55ad", + "language": "Python", + "lines": 561, + "truncated": false, + "block": 9, + "row": 11862 + }, + { + "path": "multiqc/modules/riker/__init__.py", + "sha256": "3a2aeec175ad43d7b3cdb5e27e3aa3a0e5c168a851b78d8c893023d51ebf3dea", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6159 + }, + { + "path": "multiqc/modules/riker/alignment.py", + "sha256": "56f385a728b824a11c27e1e30fac720704fefc9648a1c16637f42054cfe6abf6", + "language": "Python", + "lines": 288, + "truncated": false, + "block": 9, + "row": 10974 + }, + { + "path": "multiqc/modules/riker/basic.py", + "sha256": "e024ab073da13e89c3829c8f6b8616fde1b27c7d5f87a1b4422385182c777a70", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 9, + "row": 10646 + }, + { + "path": "multiqc/modules/riker/gcbias.py", + "sha256": "26c98dfe7334f0b1464cd01eb8d79190ca883442bae68c7c15f733efd6360933", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 9502 + }, + { + "path": "multiqc/modules/riker/hybcap.py", + "sha256": "35616ffbd8b3eb8ed44fd7651dfc5180b38469035ffb76d617ab570255de8e87", + "language": "Python", + "lines": 385, + "truncated": false, + "block": 9, + "row": 11511 + }, + { + "path": "multiqc/modules/riker/isize.py", + "sha256": "7340be18c2e8a24893686ba43bb3b96cdf233c90cb08301bd9589cde78e04593", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 9, + "row": 9940 + }, + { + "path": "multiqc/modules/riker/riker.py", + "sha256": "ed82d3a351dc446a165f8b256c3004ece00a1d339d4e866f4360b18a0d38ba99", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 8266 + }, + { + "path": "multiqc/modules/riker/tests/test_riker.py", + "sha256": "ced2625d2329518d3e7b17c6493d490da9e2744f30c38d833b9e02d3399a8e2d", + "language": "Python", + "lines": 320, + "truncated": false, + "block": 9, + "row": 11420 + }, + { + "path": "multiqc/modules/riker/util.py", + "sha256": "6133d95cd7bb30de3d60fcd0d33c92d5f5e2a418f91265d8010eab7fef3779a1", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 7989 + }, + { + "path": "multiqc/modules/riker/wgs.py", + "sha256": "57c7da034c3eb810b9d8ea3c5d5b956f21c1516dacce63df614c1930ecd63ce0", + "language": "Python", + "lines": 372, + "truncated": false, + "block": 9, + "row": 11348 + }, + { + "path": "multiqc/modules/rna_seqc/__init__.py", + "sha256": "9adf2499ed1da87001996c2f814cc99cc55cf4d9fa2cc36f46554d1fa7f69800", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6250 + }, + { + "path": "multiqc/modules/rna_seqc/rna_seqc.py", + "sha256": "21a1e8139cb655d5edaa67b1cc8931808c0e7bfdd80744a4b86e41f85694a906", + "language": "Python", + "lines": 431, + "truncated": false, + "block": 9, + "row": 11572 + }, + { + "path": "multiqc/modules/rockhopper/__init__.py", + "sha256": "2df8f60e320d40b1a333655a3624361f72d48ea35078960801835e2750e2b4df", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6291 + }, + { + "path": "multiqc/modules/rockhopper/rockhopper.py", + "sha256": "894decd7bfb7f0c9963e3a0688ee861ad8890b2f762f7ffe4a03b68709134965", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 9, + "row": 10480 + }, + { + "path": "multiqc/modules/rsem/__init__.py", + "sha256": "5236887f6e93840b9ce017fd07f7b8988d56cbe2cf1722137ed68610c6bc86d0", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6145 + }, + { + "path": "multiqc/modules/rsem/rsem.py", + "sha256": "967357b44873c8159110c6d8bb883f704d37112bc9deed687ece15e693d5d76f", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 9, + "row": 10186 + }, + { + "path": "multiqc/modules/rseqc/__init__.py", + "sha256": "506016751022e753d99ecf45e1552477f542d7844254a8c2680bc1aed4e79147", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6163 + }, + { + "path": "multiqc/modules/rseqc/bam_stat.py", + "sha256": "522a40d0cba16f0c85938ff2b906a74c981c24db647cb762829aac36a27f2a66", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 9, + "row": 9725 + }, + { + "path": "multiqc/modules/rseqc/gene_body_coverage.py", + "sha256": "a8d77a3c176d43ebebe580cac0dda33840e8df0f6b9edc6e444dbf3919d6804a", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 9, + "row": 9545 + }, + { + "path": "multiqc/modules/rseqc/infer_experiment.py", + "sha256": "072f13e7778684286a99741969c7f4e702a0fa8d0489f5518dd716f77e1c4952", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8545 + }, + { + "path": "multiqc/modules/rseqc/inner_distance.py", + "sha256": "373d323477c5c90550391dfffca871d80ac0f2e9bb0ecbee788f0693f0295fbd", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8522 + }, + { + "path": "multiqc/modules/rseqc/junction_annotation.py", + "sha256": "4a79d3dab4a4e1b4fb7681ae69f2fff80fae799b1c63e106c01caeabf0e161d3", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 9358 + }, + { + "path": "multiqc/modules/rseqc/junction_saturation.py", + "sha256": "c371fb80cfe472206e1df38ccf1c6a7076e522c5949384ddb490f05ba16e4a0d", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 9092 + }, + { + "path": "multiqc/modules/rseqc/read_distribution.py", + "sha256": "440e0e524d533e450e7973574eb95aa39674f7dfd4fa8637e6af0817a0fa75f0", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 9784 + }, + { + "path": "multiqc/modules/rseqc/read_duplication.py", + "sha256": "4163a4823485a4d5f8cb32ceea8baace5f5c30374fd935fa95c79c836265f848", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 8113 + }, + { + "path": "multiqc/modules/rseqc/read_gc.py", + "sha256": "b89822052e5670d77b691e8a15f10557463312daed7e62bd09afb51a3dab6ed8", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 8359 + }, + { + "path": "multiqc/modules/rseqc/rseqc.py", + "sha256": "5228dbb6f5fba7984c19ad7bcd7a6084e00df962da78f52540f515572407c5a3", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 9, + "row": 8491 + }, + { + "path": "multiqc/modules/rseqc/tin.py", + "sha256": "f8189bb708a980050dbb8aca3ef12e11973534369a83c8b6ad5f74c26829e48b", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 7937 + }, + { + "path": "multiqc/modules/salmon/__init__.py", + "sha256": "3b18e18c9f8101ba1cfde1f80e18269b135558edf32729ad3f9ee96d5fab8b72", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6193 + }, + { + "path": "multiqc/modules/salmon/salmon.py", + "sha256": "fe362a0a1650e27211ece478b5ea12bf4ca48cacf40fe2d082993e1fa4cd567c", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 9, + "row": 9969 + }, + { + "path": "multiqc/modules/sambamba/__init__.py", + "sha256": "d1ae67e0b77c2c27860be942d37984259275877d255f5e07788c6a4ad75622cf", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6257 + }, + { + "path": "multiqc/modules/sambamba/markdup.py", + "sha256": "48783aa0cd225e6cb567feaad0671055d592fe9657aaabb755540a985f8bd16b", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 9, + "row": 9976 + }, + { + "path": "multiqc/modules/sambamba/sambamba.py", + "sha256": "08385b10ad5ea3d021112cc011b16204b94e6a3adb2bfb48aae763527f8b6bb6", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 8033 + }, + { + "path": "multiqc/modules/samblaster/__init__.py", + "sha256": "fc0434753fa343ee8cefc3ddd0d1e1cd0e61ec8948bb81ab5df0fb70bdf802a0", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6299 + }, + { + "path": "multiqc/modules/samblaster/samblaster.py", + "sha256": "e26ee2bd9ec886e937e610830fb49aba728668f81661370a41646a81ed86b1fd", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 9, + "row": 9244 + }, + { + "path": "multiqc/modules/samtools/__init__.py", + "sha256": "2c7524bf60c46a3016285cc30673c6e7a59150ad6fef364fd4447fced3555744", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6239 + }, + { + "path": "multiqc/modules/samtools/ampliconclip.py", + "sha256": "81c43943e8511292d9e62f22aaf9780538888a99bd30334879072d9cd2f62054", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 9, + "row": 10205 + }, + { + "path": "multiqc/modules/samtools/coverage.py", + "sha256": "6ae09d115706e51dc87c90694c39f5839ff5ea64403343646420801f33f15e03", + "language": "Python", + "lines": 297, + "truncated": false, + "block": 9, + "row": 10920 + }, + { + "path": "multiqc/modules/samtools/flagstat.py", + "sha256": "14eb00e249ed7fabc8090aa6b9af93e416aaf99aab65daaa5c6b3423d7e97d14", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 9, + "row": 10373 + }, + { + "path": "multiqc/modules/samtools/idxstats.py", + "sha256": "8864a82e3c67f24881b89cec7c4b927c76b48c44929b9ab0bc2430e78eada526", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 9, + "row": 10221 + }, + { + "path": "multiqc/modules/samtools/markdup.py", + "sha256": "2023926632caacc62fcce1ea7167a8a3060c7034308170ada0ef2f00e12649ed", + "language": "Python", + "lines": 189, + "truncated": false, + "block": 9, + "row": 10409 + }, + { + "path": "multiqc/modules/samtools/rmdup.py", + "sha256": "1158e8b353deef7ccd30d605ba045a6f09e296b694f1f98da941d2868b6a47d0", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8600 + }, + { + "path": "multiqc/modules/samtools/samtools.py", + "sha256": "768fbc2636d859a20524ba2da750780d4a33f9e6b2d5e4d032ec16372870aa21", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 9, + "row": 9482 + }, + { + "path": "multiqc/modules/samtools/stats.py", + "sha256": "350afa4a779b783ddc3f13fa49567d2e1dded71484c88e5a1cc08b5e9ce139b5", + "language": "Python", + "lines": 317, + "truncated": false, + "block": 9, + "row": 11182 + }, + { + "path": "multiqc/modules/samtools/tests/test_coverage.py", + "sha256": "04194e332e75f4457402089c983f40fce95cac8f76330c8a532e558462d9abb1", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8351 + }, + { + "path": "multiqc/modules/samtools/tests/test_flagstat.py", + "sha256": "c5943342dec59952104ed3d289ef004092d5477028166b10695d52b335a9ce08", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9115 + }, + { + "path": "multiqc/modules/sargasso/__init__.py", + "sha256": "67b94288a0168cef7e545793861857e4b8a61e49661c1a6834652cc3d64ef64c", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6246 + }, + { + "path": "multiqc/modules/sargasso/sargasso.py", + "sha256": "21e4215f790bf43c3264d18acc964520163cd085a074b948ef75607ca389afad", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 9, + "row": 9789 + }, + { + "path": "multiqc/modules/seqera_cli/__init__.py", + "sha256": "020352b4402e7120867b6f9da2e2fc982c62cb17e678ff56e51355389e7e3e69", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6286 + }, + { + "path": "multiqc/modules/seqera_cli/seqera_cli.py", + "sha256": "25bf7c8dd7a47673b6a62a479059ad99a4cbf2aee0f8aee0a77c181933702c66", + "language": "Python", + "lines": 411, + "truncated": false, + "block": 9, + "row": 11536 + }, + { + "path": "multiqc/modules/seqfu/__init__.py", + "sha256": "d552bbf1eea53e8731e10d68c2d65a377aa5a8648086e92ecb0ac9e78a0343b6", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6176 + }, + { + "path": "multiqc/modules/seqfu/seqfu.py", + "sha256": "4e51cb6d37b4397a08b4406165fcea17c316a46c8fea2d20f2526e3af2fdcbcf", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7714 + }, + { + "path": "multiqc/modules/seqfu/stats.py", + "sha256": "9123baec3b9312f84f31bae1e1e4c599488eca601aeb2b2018f4ac8cd627132e", + "language": "Python", + "lines": 300, + "truncated": false, + "block": 9, + "row": 10826 + }, + { + "path": "multiqc/modules/seqfu/test/test_stats.py", + "sha256": "3e9c1351dfb78dd16eab28bb6be8225440296e4f29c371096ba32c5b24e7e6ce", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 8053 + }, + { + "path": "multiqc/modules/seqkit/__init__.py", + "sha256": "0a83b983d61efab34b845053e9d4a7d989ec3fa0aaca86e3cd1d9ae4ed9ab506", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6185 + }, + { + "path": "multiqc/modules/seqkit/seqkit.py", + "sha256": "bb769ea3be706d36810679ee72e25c156918089c23c0e009b8171d0570d65949", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 7720 + }, + { + "path": "multiqc/modules/seqkit/stats.py", + "sha256": "1c0db93498ad3faf8bbe12d4a4fb81d2873fe8f47cd09223cbd7660e2a158d0c", + "language": "Python", + "lines": 316, + "truncated": false, + "block": 9, + "row": 10844 + }, + { + "path": "multiqc/modules/seqkit/tests/test_stats.py", + "sha256": "a1b63f8e1fd64a791a6271751f448446ff8f9e8238887e7e34ae36e4cd237a1f", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 9, + "row": 9635 + }, + { + "path": "multiqc/modules/sequali/__init__.py", + "sha256": "0a392059e05b68ea048a043230e3b699238aeb55018fb371df354b265c4f9929", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6219 + }, + { + "path": "multiqc/modules/sequali/sequali.py", + "sha256": "a2eedc4c707be4d73b975e71d1e33b77c88863b0fc5641173101aecbd58d40f0", + "language": "Python", + "lines": 928, + "truncated": false, + "block": 9, + "row": 12408 + }, + { + "path": "multiqc/modules/seqwho/__init__.py", + "sha256": "06734e27c3448e5b3772154431bccc6fe1d15fd56486355294d21bb3f5d2ec7a", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6184 + }, + { + "path": "multiqc/modules/seqwho/seqwho.py", + "sha256": "f14ac048796bcc1adbe6dfe5f712981c61d82044c632c60df7078d0d3397394e", + "language": "Python", + "lines": 262, + "truncated": false, + "block": 9, + "row": 10816 + }, + { + "path": "multiqc/modules/seqyclean/__init__.py", + "sha256": "2f8f14fef36b90c94482cbc5c2fcbdbf04d66dfea3272a463641c7d53569b897", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6272 + }, + { + "path": "multiqc/modules/seqyclean/seqyclean.py", + "sha256": "0d09e3926a470229559d068573feac21bdc32d3e424bddd52a38d14b4e8a8357", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 9, + "row": 9971 + }, + { + "path": "multiqc/modules/sexdeterrmine/__init__.py", + "sha256": "53da61e1b19c97a8ea0e81480147e94dbd0035e504835a09b17bfc9a376931a0", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6319 + }, + { + "path": "multiqc/modules/sexdeterrmine/sexdeterrmine.py", + "sha256": "484135bf1187c97f7bd3dd01e2c654ea4af6fce0227f88ddab048382ccbf476a", + "language": "Python", + "lines": 179, + "truncated": false, + "block": 9, + "row": 9984 + }, + { + "path": "multiqc/modules/sickle/__init__.py", + "sha256": "3976729b6c6d08965ff265bff50321351a43064e33a07ccce8b0be1f92a2827c", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6191 + }, + { + "path": "multiqc/modules/sickle/sickle.py", + "sha256": "1f823efef43580a99e722897ecc6b9b09f5de2e8dbd1644f2a774766553dab8f", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 9547 + }, + { + "path": "multiqc/modules/sincei/__init__.py", + "sha256": "ed7c2d1cbe8b32f07cf05bf26ab39cfd824112f9fd15392424de4c00d18de38f", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6214 + }, + { + "path": "multiqc/modules/sincei/_helpers.py", + "sha256": "9a0636ba4a3ea805f2d7c83d7c49afc0571997c3050ab456198d6a49ee4dd417", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6645 + }, + { + "path": "multiqc/modules/sincei/scCountQC.py", + "sha256": "9f8c07a3e1dafd4937198f28a14bc14eb149c1afb21ffadd384bb9803b38d317", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 9, + "row": 10332 + }, + { + "path": "multiqc/modules/sincei/scFilterStats.py", + "sha256": "abe35f70a7b46ee9084e680d6cbddf87ebcd5033ac39695b18e9f3355d168ee5", + "language": "Python", + "lines": 263, + "truncated": false, + "block": 9, + "row": 11034 + }, + { + "path": "multiqc/modules/sincei/sincei.py", + "sha256": "6d42dd282dd4ee1b526284d2fcebc2f5edab14d9ca3fb5573b2c7adc09740f60", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 8386 + }, + { + "path": "multiqc/modules/skewer/__init__.py", + "sha256": "a6ffa5d5080990cae16793fb264b47b4b28bb8a1a8f3f8086e06207e98baff19", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6206 + }, + { + "path": "multiqc/modules/skewer/skewer.py", + "sha256": "932d04977a6abef3cb6326f4016eec75252c83ec29ad624146015a02407a44b7", + "language": "Python", + "lines": 157, + "truncated": false, + "block": 9, + "row": 9850 + }, + { + "path": "multiqc/modules/slamdunk/__init__.py", + "sha256": "d94eb2b01c76352eff6883cf409baa6af6f4fbb6f29684625caf5d3f6b6c2a11", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6260 + }, + { + "path": "multiqc/modules/slamdunk/slamdunk.py", + "sha256": "392648f3250d65701f6c24874cbbdd7b7ad84b9e0eea209d0e9426509a8a4784", + "language": "Python", + "lines": 621, + "truncated": false, + "block": 9, + "row": 12110 + }, + { + "path": "multiqc/modules/snippy/__init__.py", + "sha256": "41d365f60c013fc08881d30e5256d0b613c3efc34b63e5a426353900d830f859", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6195 + }, + { + "path": "multiqc/modules/snippy/snippy.py", + "sha256": "72fc774dada5b929ee13f3cb368917db68634e0f8cabdfc684ea8e862b872ac6", + "language": "Python", + "lines": 263, + "truncated": false, + "block": 9, + "row": 10707 + }, + { + "path": "multiqc/modules/snpeff/__init__.py", + "sha256": "ce3f239de8de5dc30f3804c24ad214927466a9d77fb6659cdaa1f4fa50bfa86e", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6210 + }, + { + "path": "multiqc/modules/snpeff/snpeff.py", + "sha256": "2994f2660683508465fecbdb43dc55f9ea33109f3c688d6334d4d4e38639c4d4", + "language": "Python", + "lines": 359, + "truncated": false, + "block": 9, + "row": 11188 + }, + { + "path": "multiqc/modules/snpsplit/__init__.py", + "sha256": "68cd689e93e424577eb249719fd183cf26114b43f8c1dfb9d523ea5295f57783", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6247 + }, + { + "path": "multiqc/modules/snpsplit/snpsplit.py", + "sha256": "6f727385417e7028d0f048e965d4da4250c871c1011533d4ebfb377b785aa03d", + "language": "Python", + "lines": 292, + "truncated": false, + "block": 9, + "row": 11323 + }, + { + "path": "multiqc/modules/somalier/__init__.py", + "sha256": "bf3ceac6bf1722099de37b51ad91f318ed1a160b0d587c17dcb4336ea30fd54e", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6254 + }, + { + "path": "multiqc/modules/somalier/somalier.py", + "sha256": "447c7e178e657f86f8776358d4dde8c0c9ad6cfda00317888df1dbbaec461713", + "language": "Python", + "lines": 719, + "truncated": false, + "block": 9, + "row": 12162 + }, + { + "path": "multiqc/modules/sompy/__init__.py", + "sha256": "8dca5765e28e008a637393196e5bcfea304ea992d21c7313bafa9390788ede93", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6171 + }, + { + "path": "multiqc/modules/sompy/sompy.py", + "sha256": "1831b83662427879b50ac709d8a2f1811ab186dd3749939a4c12f1629dcfb34c", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 9, + "row": 10174 + }, + { + "path": "multiqc/modules/sortmerna/__init__.py", + "sha256": "2e0d161d89090c67d6dcbd3cc6954cac12276e4f3d90630442a02045d8091dac", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6271 + }, + { + "path": "multiqc/modules/sortmerna/sortmerna.py", + "sha256": "f93a04907d22c7d7cfa92567b56ec76aba907c73010bc39e16c887cb0167428b", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 9929 + }, + { + "path": "multiqc/modules/sourmash/__init__.py", + "sha256": "40f6c59c192d934c95637ae1bc6e855fde0b42de93f43acf82c66c56cab4ae1c", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6243 + }, + { + "path": "multiqc/modules/sourmash/compare.py", + "sha256": "76e77565afcdff337ac8a6ee9836b9b193a1a2d797efc86afac3095d98c68a3c", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8685 + }, + { + "path": "multiqc/modules/sourmash/gather.py", + "sha256": "cea818c9f3c69947758c56fa3ca863705c99e3709828907f081e3abac8931395", + "language": "Python", + "lines": 219, + "truncated": false, + "block": 9, + "row": 10783 + }, + { + "path": "multiqc/modules/sourmash/sourmash.py", + "sha256": "ceecd973d869700747684219108086b9d94c7fa802d19caef726df40656015df", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7765 + }, + { + "path": "multiqc/modules/spaceranger/__init__.py", + "sha256": "ab4880d0f3f888738023ab5f3d54d11660cc0dad3420bb6d2315e88779d03a35", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6307 + }, + { + "path": "multiqc/modules/spaceranger/count.py", + "sha256": "10c8cc40c05dbaf5a2ebce9d90dba8c7615b19287bd44c1f0b6a5b6c2f868b06", + "language": "Python", + "lines": 348, + "truncated": false, + "block": 9, + "row": 11440 + }, + { + "path": "multiqc/modules/spaceranger/spaceranger.py", + "sha256": "8438ac3a4d4a424583c95b1aef62113de906cc5723f9fc5b7cf3f557923304de", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7719 + }, + { + "path": "multiqc/modules/spaceranger/utils.py", + "sha256": "6493cd24767b0f9b9b5d2fdd4a9be88dbcf3a7830fb93a0e028ce5c1c5f4c6d1", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8226 + }, + { + "path": "multiqc/modules/stacks/__init__.py", + "sha256": "e4797cffba6bf35b51519e45ebbb2c2863f33f692d9506ee3c93606ea0823eee", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6213 + }, + { + "path": "multiqc/modules/stacks/stacks.py", + "sha256": "9a93267e8f3109ba4f6f2ad479b9f3a697633b53b509659cec40bc65eca201bf", + "language": "Python", + "lines": 301, + "truncated": false, + "block": 9, + "row": 11146 + }, + { + "path": "multiqc/modules/star/__init__.py", + "sha256": "6a8b8d7193536066a5e32b19191562228374f091f3e45b34e3a22414258265b8", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6147 + }, + { + "path": "multiqc/modules/star/star.py", + "sha256": "4578c0194731707fc8ce2da3a2567668d8f416de991cdbfa49f695c6c660f31c", + "language": "Python", + "lines": 413, + "truncated": false, + "block": 9, + "row": 11680 + }, + { + "path": "multiqc/modules/supernova/__init__.py", + "sha256": "812870f5a9634ea2cb7ff2b266f7b80776db5c0635c4e230dbc3bd9c99173ace", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6281 + }, + { + "path": "multiqc/modules/supernova/supernova.py", + "sha256": "29af17e118195a13bc181b517b0ed2570ae939d8491be5abc1236aa6f2992c6d", + "language": "Python", + "lines": 550, + "truncated": false, + "block": 9, + "row": 11976 + }, + { + "path": "multiqc/modules/sylphtax/__init__.py", + "sha256": "663bd4010b96edf8a44f799ec7b98632597cd08dfe503ebb6c65e7033ecbd11b", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6245 + }, + { + "path": "multiqc/modules/sylphtax/sylphtax.py", + "sha256": "f20536d1f3353ad372d3ab64f383c5aaa9cad354b9f4b03e5c51cf3e7aed90ee", + "language": "Python", + "lines": 360, + "truncated": false, + "block": 9, + "row": 11347 + }, + { + "path": "multiqc/modules/telseq/__init__.py", + "sha256": "a5d79e203a172a59afc0209a38cdcda5e2fd4bff4d547e804d47136a6eea0541", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6205 + }, + { + "path": "multiqc/modules/telseq/telseq.py", + "sha256": "b389cfa42c85ca9139350aa5d2d7f7666eefc23979c100c1a76d8d61c4f7f641", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8692 + }, + { + "path": "multiqc/modules/theta2/__init__.py", + "sha256": "3a8650353e9bd1036cd7e2c3f96c800a5fe792692a1f8a1a082b36986cafcf70", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6192 + }, + { + "path": "multiqc/modules/theta2/theta2.py", + "sha256": "fd642f9ef24ebe406cea2433fdbc1e9d5ae04c23a0a2f4d9f28ad9eb16c54b36", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 9, + "row": 9169 + }, + { + "path": "multiqc/modules/tophat/__init__.py", + "sha256": "bfcab19612822bf0b5c4c553ae4038f6fcf2ff840b5e5c56b4868807fab2be11", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6209 + }, + { + "path": "multiqc/modules/tophat/tophat.py", + "sha256": "e4a0a2877ab3ac41a5236fc2bc9da9dfb30e895db778e60017eadeec9e70d3cb", + "language": "Python", + "lines": 144, + "truncated": false, + "block": 9, + "row": 9828 + }, + { + "path": "multiqc/modules/trim_galore/__init__.py", + "sha256": "87a3865f53b24cb9805ec4bf6e2064bacdb26a5bc08f51d1f21621008fb92929", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6306 + }, + { + "path": "multiqc/modules/trim_galore/trim_galore.py", + "sha256": "04042e5eb9a6150a0166716e5ecd6ffca2485db0c9e6c495135d76c86741af40", + "language": "Python", + "lines": 603, + "truncated": false, + "block": 9, + "row": 12094 + }, + { + "path": "multiqc/modules/trimmomatic/__init__.py", + "sha256": "55b187d8db7720e689784807dd47a36d96e51c3fd6b2110476ba65b558ac35af", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6304 + }, + { + "path": "multiqc/modules/trimmomatic/trimmomatic.py", + "sha256": "b420c10915d14a903fced9ae127bf25722b74469db1216a253db236e7728bda2", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 9, + "row": 10210 + }, + { + "path": "multiqc/modules/truvari/__init__.py", + "sha256": "58f604eb6e0c66284dc5bb0be9aa6a2789eb294d558f74968fdc66c44cec938d", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6221 + }, + { + "path": "multiqc/modules/truvari/truvari.py", + "sha256": "3cabb7b09b296e0fa0db5ebd43c6f3ce3fb4094968ec65f1044996cb0afa14b2", + "language": "Python", + "lines": 307, + "truncated": false, + "block": 9, + "row": 11008 + }, + { + "path": "multiqc/modules/umicollapse/__init__.py", + "sha256": "ce01d4cb60b1c819f92fba43a778f068a7c7e6b3a8172f1d00ca942cae764b01", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6309 + }, + { + "path": "multiqc/modules/umicollapse/tests/test_umicollapse.py", + "sha256": "e13c3b5cf74819b0b59455b820f81db234b46ef3fe2ee2712c4c6084f49c53a0", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8326 + }, + { + "path": "multiqc/modules/umicollapse/umicollapse.py", + "sha256": "6927e7d85165e8012feec94f9827be5a398ad1a9050887773c0a5132aca3d169", + "language": "Python", + "lines": 220, + "truncated": false, + "block": 9, + "row": 10537 + }, + { + "path": "multiqc/modules/umitools/__init__.py", + "sha256": "ee0e9a3d4d8980fef1aeecd394e55ab274b9994ed0fcf613ca5d929a2b67a0ea", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6262 + }, + { + "path": "multiqc/modules/umitools/tests/test_umitools.py", + "sha256": "a1bd6d7216f4e68f3307a489fdf26bd7fbcbe113bfcfc80dc42d156aec02c77c", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7584 + }, + { + "path": "multiqc/modules/umitools/umitools.py", + "sha256": "2310d11b6209c5b66fa3ae9c32e36e9215597422356d75171e4f380528be1d2e", + "language": "Python", + "lines": 402, + "truncated": false, + "block": 9, + "row": 11589 + }, + { + "path": "multiqc/modules/varscan2/__init__.py", + "sha256": "f8d2c3d71df26afeea107952742d0987c76fb2a1e4cc5c204c11854e9e435f3f", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6265 + }, + { + "path": "multiqc/modules/varscan2/varscan2.py", + "sha256": "0bf4eaeefa1ce757e73db95dfcffd1722cbd3bd253d414ca5da3e273ecf6b725", + "language": "Python", + "lines": 247, + "truncated": false, + "block": 9, + "row": 10937 + }, + { + "path": "multiqc/modules/vcftools/__init__.py", + "sha256": "25b7f0db42cb38cb5dd0e6b296f923c46b5a126056ad3574c2631cbcb29098c8", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6238 + }, + { + "path": "multiqc/modules/vcftools/relatedness2.py", + "sha256": "c389a3fa64a293a75b28c47fad819977fb7176f93b3eecc93f40148331edc9b0", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 9, + "row": 8610 + }, + { + "path": "multiqc/modules/vcftools/tstv_by_count.py", + "sha256": "afdb6c1f4e5763bb2bb102bc0746c65c0d19c001cc1da4ee063a9ed59384bcc6", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 8369 + }, + { + "path": "multiqc/modules/vcftools/tstv_by_qual.py", + "sha256": "9cf261ad665d64adb67057bef73b1b822df9f60ec420f0ffa88a51266893b261", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 8400 + }, + { + "path": "multiqc/modules/vcftools/tstv_summary.py", + "sha256": "a4907d07f2e6b9311aa9abc243c8916dfedc0f383cdc263372a34194007ad4b8", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7875 + }, + { + "path": "multiqc/modules/vcftools/vcftools.py", + "sha256": "ea12f07884a49d9c955cfa95d012f642f1f23fd0e2d5b2de13cb9ec45722134c", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8500 + }, + { + "path": "multiqc/modules/vep/__init__.py", + "sha256": "781a0c965e3d2a901dc528681214dd32ea08536e3a8ac1ba5a907fb52de9db11", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6141 + }, + { + "path": "multiqc/modules/vep/vep.py", + "sha256": "b971b98e8e390365fd6400694365934f82b9bd08f8385fd77184d8628a61cb84", + "language": "Python", + "lines": 405, + "truncated": false, + "block": 9, + "row": 11544 + }, + { + "path": "multiqc/modules/verifybamid/__init__.py", + "sha256": "41063fb2421594781bb050c59a7efdcc77be92f579543154c8a08aaf8df1ed93", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6301 + }, + { + "path": "multiqc/modules/verifybamid/verifybamid.py", + "sha256": "d0978c2aa8f1f1e8f7ec1c1e3fa53d36beba4f4195c6d042731f5d0d22839038", + "language": "Python", + "lines": 355, + "truncated": false, + "block": 9, + "row": 11645 + }, + { + "path": "multiqc/modules/vg/__init__.py", + "sha256": "c42e262334d6972a3c2bb1071894b2b0c748abab6c443d0b255aded7c6c91ee2", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6140 + }, + { + "path": "multiqc/modules/vg/vg.py", + "sha256": "3f66a0b02583ef9836a319031252c79c324205a1b7cb5c1ee1bf64580f89755e", + "language": "Python", + "lines": 314, + "truncated": false, + "block": 9, + "row": 11256 + }, + { + "path": "multiqc/modules/whatshap/__init__.py", + "sha256": "e23ece1458d8ee25414e4735915ff7f9f48d9c03138cb0b919f8e806236bcb7c", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6261 + }, + { + "path": "multiqc/modules/whatshap/whatshap.py", + "sha256": "0a7b125c0b752ba46888bfbc9096f8b1d4024fc300e45bc50e668655e3df408d", + "language": "Python", + "lines": 432, + "truncated": false, + "block": 9, + "row": 11714 + }, + { + "path": "multiqc/modules/xengsort/__init__.py", + "sha256": "ffa0f8951b0a13ccf18db23513f9f3f2b3ceaaba0ee9af11a4305457e197f54e", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6267 + }, + { + "path": "multiqc/modules/xengsort/xengsort.py", + "sha256": "709a3f335d4210f458c1c663776fbcbb39d2e1e2cb9cbcc6446d4c894bcd1b10", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 9, + "row": 10195 + }, + { + "path": "multiqc/modules/xenium/__init__.py", + "sha256": "05b53843fdb511f2101d4230dbac3133e41422b6041fb69714d2e7faa6c26a34", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6111 + }, + { + "path": "multiqc/modules/xenium/xenium.py", + "sha256": "f66e857480cb1f0e16c5510e1fff3f3413b7dd7acc2d2858bd7083a65637f675", + "language": "Python", + "lines": 313, + "truncated": false, + "block": 9, + "row": 11169 + }, + { + "path": "multiqc/modules/xenome/__init__.py", + "sha256": "59e4fbf429b7236c55c01f649cd9c1c253f538c956ac316defed0aa3ef59cf14", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6197 + }, + { + "path": "multiqc/modules/xenome/xenome.py", + "sha256": "19fea33883c2572f813faa4aeea11f81ee8e2f6e1005e7f1090cd5b3587b1807", + "language": "Python", + "lines": 324, + "truncated": false, + "block": 9, + "row": 11271 + }, + { + "path": "multiqc/multiqc.py", + "sha256": "0f8dd94bd62e5dacda4486f7d7b96d9b6ed0947ee38d61df6bceb6547da01c1c", + "language": "Python", + "lines": 749, + "truncated": false, + "block": 9, + "row": 11975 + }, + { + "path": "multiqc/plots/bargraph.py", + "sha256": "86f7d3e7d394d5254567044e871b6a8e4137dcc5e0f6c7e084eb93739a68b618", + "language": "Python", + "lines": 1129, + "truncated": false, + "block": 9, + "row": 12481 + }, + { + "path": "multiqc/plots/box.py", + "sha256": "3866312f50ae2700f582cf553e22ed41016ee72c372006bfb4df5266a5a246a5", + "language": "Python", + "lines": 563, + "truncated": false, + "block": 9, + "row": 12015 + }, + { + "path": "multiqc/plots/heatmap.py", + "sha256": "418b322cbc04b108288af183d082158e8f469ae8be54c934976842d72e055d09", + "language": "Python", + "lines": 775, + "truncated": false, + "block": 9, + "row": 12222 + }, + { + "path": "multiqc/plots/linegraph.py", + "sha256": "649dca713321b191391b2151386f1f55fb05b9d0c0f9074ef5af8f469fc9f6e6", + "language": "Python", + "lines": 896, + "truncated": false, + "block": 9, + "row": 12352 + }, + { + "path": "multiqc/plots/plot.py", + "sha256": "823bc2722f5ac783a18ff567edd2c447e722580d71e4cf93090518078c6172f1", + "language": "Python", + "lines": 2138, + "truncated": false, + "block": 9, + "row": 12624 + }, + { + "path": "multiqc/plots/scatter.py", + "sha256": "e6a7883eb4368fe31a6c5e14bd5db304b61421a79e169fc24a09a619fa58b4a0", + "language": "Python", + "lines": 568, + "truncated": false, + "block": 9, + "row": 11979 + }, + { + "path": "multiqc/plots/table.py", + "sha256": "c96487d68c27b55fd1af2b71d0c0d5861bf6d48b2186e3445db00cf362727cd9", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 7545 + }, + { + "path": "multiqc/plots/table_object.py", + "sha256": "5500c50ff26d1bf35b26fe67a959baa7ac99d117f608f6c663ed0a531119998f", + "language": "Python", + "lines": 1387, + "truncated": false, + "block": 9, + "row": 12546 + }, + { + "path": "multiqc/plots/utils.py", + "sha256": "508a8679338a71eeb7bad7ba6904b2405e01f1a64f26d78dc7174bd75fdc60b3", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 7847 + }, + { + "path": "multiqc/plots/violin.py", + "sha256": "f22659c0b7625b05039f527f64e88c6a59ffce3be9b3801f674b9d5318e865cb", + "language": "Python", + "lines": 1198, + "truncated": false, + "block": 9, + "row": 12492 + }, + { + "path": "multiqc/report.py", + "sha256": "c7837656bd7284ad0b866729c77e2c1045f7d13901a8e1936374041c412a0712", + "language": "Python", + "lines": 1270, + "truncated": false, + "block": 9, + "row": 12485 + }, + { + "path": "multiqc/templates/default/__init__.py", + "sha256": "e103ddee95a0266c9f6b61428ac6fbb0e57987ced52a915c76afcd734fc16118", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6729 + }, + { + "path": "multiqc/templates/default/assets/js/packages/FileSaver.min.js", + "sha256": "14f249b7c9c0fb12f8454ebf82cae203ca7cc4078b19ab68c938e576f40a19d1", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 9, + "row": 2047 + }, + { + "path": "multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js", + "sha256": "85556761a8800d14ced8fcd41a6b8b26bf012d44a318866c0d81a62092efd9bf", + "language": "JavaScript", + "lines": 4, + "truncated": false, + "block": 9, + "row": 2125 + }, + { + "path": "multiqc/templates/default/assets/js/packages/jquery-ui.min.js", + "sha256": "8963bccf5b1b385956f63a879ba3c395d5dbdb009caa8de004d3d9c60fd3041b", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 9, + "row": 2116 + }, + { + "path": "multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js", + "sha256": "76d187d57700c8aa2932e8b9c76d0a9cfc6e1ae4b1f51b3aa62241ff83aabba2", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 9, + "row": 2118 + }, + { + "path": "multiqc/templates/default/assets/js/packages/jszip.min.js", + "sha256": "acc7e41455a80765b5fd9c7ee1b8078a6d160bbbca455aeae854de65c947d59e", + "language": "JavaScript", + "lines": 13, + "truncated": false, + "block": 9, + "row": 2127 + }, + { + "path": "multiqc/templates/default/assets/js/packages/pako_inflate.min.js", + "sha256": "fa226c8e1e3556993260e6a5c1fe94e225da59b3418a06811fdc51d308f8bb43", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 9, + "row": 2104 + }, + { + "path": "multiqc/templates/default/assets/js/packages/plotly-3.1.2.custom.min.js", + "sha256": "fed9bb86c760320506f3cacdc9f051fdf617e390a08c780a75eb1952689f04f0", + "language": "JavaScript", + "lines": 18, + "truncated": true, + "block": 9, + "row": 2132 + }, + { + "path": "multiqc/templates/default/assets/js/packages/showdown.min.js", + "sha256": "470ee76d0054b235f1a0f0e6745ec4c897b5ca402612c63f04098834c345546b", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2121 + }, + { + "path": "multiqc/templates/default/compiled/js/multiqc.min.js", + "sha256": "b8872c5a781614d23cb545015ec68c9803d55da6ccdde198c2d8ffbd4346cbc2", + "language": "JavaScript", + "lines": 1, + "truncated": true, + "block": 9, + "row": 2134 + }, + { + "path": "multiqc/templates/default/src/js/ai-helpers.js", + "sha256": "84451975be26b8c8a88ad7ba23bb04771ad0649d7479a021ac76ab179974eeb4", + "language": "JavaScript", + "lines": 667, + "truncated": false, + "block": 9, + "row": 2110 + }, + { + "path": "multiqc/templates/default/src/js/ai.js", + "sha256": "a141365d03eb8cb42a38dcddb4218551be865a517feb841ee826ec165465f09a", + "language": "JavaScript", + "lines": 555, + "truncated": false, + "block": 9, + "row": 2103 + }, + { + "path": "multiqc/templates/default/src/js/color-mode.js", + "sha256": "a4f1475c0e9223489732f073c2ab651617670f18b2d0b11c45c3e2ffafded0a8", + "language": "JavaScript", + "lines": 112, + "truncated": false, + "block": 9, + "row": 2055 + }, + { + "path": "multiqc/templates/default/src/js/decompress.js", + "sha256": "4e39511ade942ec23f0f831ed667ce31268725cb914f346d7085a1da9fc7086d", + "language": "JavaScript", + "lines": 50, + "truncated": false, + "block": 9, + "row": 2041 + }, + { + "path": "multiqc/templates/default/src/js/doi.js", + "sha256": "cc4653b8e1b933d56bf943ee4b824fc546b57ba9b051d3332d09c461e6a4f3f1", + "language": "JavaScript", + "lines": 134, + "truncated": false, + "block": 9, + "row": 2058 + }, + { + "path": "multiqc/templates/default/src/js/flat.js", + "sha256": "e1e49882c71bc3abf5900d2167f9a3327722e48c37a8ab63c9fa31f8a6566352", + "language": "JavaScript", + "lines": 42, + "truncated": false, + "block": 9, + "row": 2037 + }, + { + "path": "multiqc/templates/default/src/js/main-js.js", + "sha256": "fa31a22fe950aecc309fdf7eef46d97cc76017bbbc1ecca99c9a62cb9b60c977", + "language": "JavaScript", + "lines": 48, + "truncated": false, + "block": 9, + "row": 2036 + }, + { + "path": "multiqc/templates/default/src/js/main.js", + "sha256": "e952f550288247000e13f5f74b9eeefe98c39b2b921c6f87fe945c2aae8a2286", + "language": "JavaScript", + "lines": 5, + "truncated": false, + "block": 9, + "row": 2016 + }, + { + "path": "multiqc/templates/default/src/js/multiqc.js", + "sha256": "d4c4e9f93523b19beba3b11975d0d2810897b2f956940838c9bff385dd806beb", + "language": "JavaScript", + "lines": 114, + "truncated": false, + "block": 9, + "row": 2056 + }, + { + "path": "multiqc/templates/default/src/js/plots/bar.js", + "sha256": "a5ccb46e4255a67b994d8292f5cfed89afc4a6afc77b89d39e48289f41b83b89", + "language": "JavaScript", + "lines": 363, + "truncated": false, + "block": 9, + "row": 2091 + }, + { + "path": "multiqc/templates/default/src/js/plots/box.js", + "sha256": "1c951fd8d8a5fe993b5483bb435c8a30d1d0208b0c7094ec84c0b59d43bc7dfe", + "language": "JavaScript", + "lines": 213, + "truncated": false, + "block": 9, + "row": 2080 + }, + { + "path": "multiqc/templates/default/src/js/plots/heatmap.js", + "sha256": "de8e568efb0509efb9d225fcee7c488a8efae4dc7d91540cecaafea8099ae503", + "language": "JavaScript", + "lines": 193, + "truncated": false, + "block": 9, + "row": 2081 + }, + { + "path": "multiqc/templates/default/src/js/plots/line.js", + "sha256": "5fde64f8d15dd9e000f2280ecc603c9b95de18f54157c593f04bc7f3f63e91b7", + "language": "JavaScript", + "lines": 174, + "truncated": false, + "block": 9, + "row": 2069 + }, + { + "path": "multiqc/templates/default/src/js/plots/scatter.js", + "sha256": "e53030dea60de716a03f26f0d4e81bb4ecfeb1971d9013b4697d70615d8b5269", + "language": "JavaScript", + "lines": 144, + "truncated": false, + "block": 9, + "row": 2070 + }, + { + "path": "multiqc/templates/default/src/js/plots/violin.js", + "sha256": "96ef147dff6204578bea2b1f0349cee215f5e1b4aa4c6e7b7b34dbd41c4b82de", + "language": "JavaScript", + "lines": 455, + "truncated": false, + "block": 9, + "row": 2096 + }, + { + "path": "multiqc/templates/default/src/js/plotting.js", + "sha256": "b72710e13b43802c60ceb51b6ad5b404fbcd6e60008285949ea7d69dcd925f49", + "language": "JavaScript", + "lines": 803, + "truncated": false, + "block": 9, + "row": 2112 + }, + { + "path": "multiqc/templates/default/src/js/render.js", + "sha256": "207a8c21335a0e00a3ce8914fc09ecff460d97ba860114ba4b0b77b2902ced7e", + "language": "JavaScript", + "lines": 15, + "truncated": false, + "block": 9, + "row": 2023 + }, + { + "path": "multiqc/templates/default/src/js/statuses.js", + "sha256": "2678c9e9e9d6450449f5ae89ee8a859667e4de479adb0b45cccd90a2eb13b06d", + "language": "JavaScript", + "lines": 260, + "truncated": false, + "block": 9, + "row": 2084 + }, + { + "path": "multiqc/templates/default/src/js/tables.js", + "sha256": "88d2cb172e78f6f39a9c252852a110808ad526a52c19c89110c88bb3ad000fa4", + "language": "JavaScript", + "lines": 628, + "truncated": false, + "block": 9, + "row": 2106 + }, + { + "path": "multiqc/templates/default/src/js/toolbox.js", + "sha256": "1e1a6a5cb258742efc2871e48337bd3db65eee7b7a0587d848849a4ad276aebd", + "language": "JavaScript", + "lines": 107, + "truncated": false, + "block": 9, + "row": 2054 + }, + { + "path": "multiqc/templates/default/src/js/toolbox/ai.js", + "sha256": "04da61d943e0f9d16eaed11a4bb354d1e61c25ada65ccef4e82cd31b3a530116", + "language": "JavaScript", + "lines": 254, + "truncated": false, + "block": 9, + "row": 2087 + }, + { + "path": "multiqc/templates/default/src/js/toolbox/citations.js", + "sha256": "c2e12dbf5782efc0bb6ad4ba72c404c4dc5afb4c42c17b6dc7c8d41404226e68", + "language": "JavaScript", + "lines": 56, + "truncated": false, + "block": 9, + "row": 2042 + }, + { + "path": "multiqc/templates/default/src/js/toolbox/constants.js", + "sha256": "84544a55cf3a4f7fd959db201582ce3f2b60fbf03d058f837f33ccc718bee44f", + "language": "JavaScript", + "lines": 60, + "truncated": false, + "block": 9, + "row": 2038 + }, + { + "path": "multiqc/templates/default/src/js/toolbox/export.js", + "sha256": "3184c6a631599a378f6b662de9a951a04df7e43c93448cdfb0db23baaaf5d6f2", + "language": "JavaScript", + "lines": 212, + "truncated": false, + "block": 9, + "row": 2085 + }, + { + "path": "multiqc/templates/default/src/js/toolbox/filters.js", + "sha256": "51b48682782adec689a97212450db773c91765e8b58343322b2f0cba9c626b22", + "language": "JavaScript", + "lines": 72, + "truncated": false, + "block": 9, + "row": 2049 + }, + { + "path": "multiqc/templates/default/src/js/toolbox/help.js", + "sha256": "c54b2f4bb05823736e010d967e4f0c1ed8f867cc56a83b9df7479449b311dfe5", + "language": "JavaScript", + "lines": 46, + "truncated": false, + "block": 9, + "row": 2040 + }, + { + "path": "multiqc/templates/default/src/js/toolbox/hide.js", + "sha256": "9a09ccaa11a372c54aa591d471a5bef89a009ad8b0b5eea89d9057b214f28c9f", + "language": "JavaScript", + "lines": 155, + "truncated": false, + "block": 9, + "row": 2071 + }, + { + "path": "multiqc/templates/default/src/js/toolbox/highlights.js", + "sha256": "ab411fa710d0934def09ed2150dc84c47ec3f3e9f9dc991a146062ac851f38e4", + "language": "JavaScript", + "lines": 116, + "truncated": false, + "block": 9, + "row": 2060 + }, + { + "path": "multiqc/templates/default/src/js/toolbox/rename.js", + "sha256": "4bcf18537481bef7e8076cc9bb7aafb61ea741066dc27f640f767558d6276c99", + "language": "JavaScript", + "lines": 168, + "truncated": false, + "block": 9, + "row": 2073 + }, + { + "path": "multiqc/templates/default/src/js/toolbox/save-load.js", + "sha256": "bfe96a8e735ad63a031707f6c87b51b985536e81c18c2cffc72e24a96f5e5256", + "language": "JavaScript", + "lines": 445, + "truncated": false, + "block": 9, + "row": 2094 + }, + { + "path": "multiqc/templates/default/src/js/toolbox/utils.js", + "sha256": "ff6c791dd78e0478f27ec9c873767e04da3c4199305a1bf2e6e207abef5b675b", + "language": "JavaScript", + "lines": 141, + "truncated": false, + "block": 9, + "row": 2063 + }, + { + "path": "multiqc/templates/default/vite.config.js", + "sha256": "295c78a0f3ca011c2113f6519113a058ce1bb749d015434a1955c474c18dafa7", + "language": "JavaScript", + "lines": 26, + "truncated": false, + "block": 9, + "row": 2028 + }, + { + "path": "multiqc/templates/disco/__init__.py", + "sha256": "a182350bbbebdb3f250e02c3ad5ac222961ed50ffa0891c2e58c94fc6abaa31a", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6783 + }, + { + "path": "multiqc/templates/disco/compiled/js/multiqc.min.js", + "sha256": "b8872c5a781614d23cb545015ec68c9803d55da6ccdde198c2d8ffbd4346cbc2", + "language": "JavaScript", + "lines": 1, + "truncated": true, + "block": 9, + "row": 2134 + }, + { + "path": "multiqc/templates/disco/src/js/main.js", + "sha256": "0f14b189ca30cf4ea5fbf727584b673e5e49e965229367c57724e09a5c0f2738", + "language": "JavaScript", + "lines": 5, + "truncated": false, + "block": 9, + "row": 2017 + }, + { + "path": "multiqc/templates/disco/vite.config.js", + "sha256": "295c78a0f3ca011c2113f6519113a058ce1bb749d015434a1955c474c18dafa7", + "language": "JavaScript", + "lines": 26, + "truncated": false, + "block": 9, + "row": 2028 + }, + { + "path": "multiqc/templates/gathered/__init__.py", + "sha256": "b07fc6d99e0f11a888e949b32c71d47eab2ed63f20f51556d89beccc6c19f102", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6515 + }, + { + "path": "multiqc/templates/geo/__init__.py", + "sha256": "4029a2640101cd8aaa70e7fe23fbf933f3cb1cb57e8e54e957036951d5b4e02c", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6506 + }, + { + "path": "multiqc/templates/original/__init__.py", + "sha256": "6a64445507d4f1f3f9556e86e415a7ed1931d648ee610acfc8908ba9db9e7d20", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6726 + }, + { + "path": "multiqc/templates/original/assets/js/ai-helpers.js", + "sha256": "af87ff2b48366345922921c2f35fdaec464d79a4df10df8b7a44b2ae162a862f", + "language": "JavaScript", + "lines": 662, + "truncated": false, + "block": 9, + "row": 2109 + }, + { + "path": "multiqc/templates/original/assets/js/ai.js", + "sha256": "eb83bfd1e24727d3f3daea5540d83e95f9fd18dea0908bec475e947e50c4dc15", + "language": "JavaScript", + "lines": 570, + "truncated": false, + "block": 9, + "row": 2105 + }, + { + "path": "multiqc/templates/original/assets/js/decompress.js", + "sha256": "0ed8e08f7412d8a81473bb6ab7c775ead373e6dcb377210a8477ed71fc1fc40e", + "language": "JavaScript", + "lines": 47, + "truncated": false, + "block": 9, + "row": 2039 + }, + { + "path": "multiqc/templates/original/assets/js/flat.js", + "sha256": "e1e49882c71bc3abf5900d2167f9a3327722e48c37a8ab63c9fa31f8a6566352", + "language": "JavaScript", + "lines": 42, + "truncated": false, + "block": 9, + "row": 2037 + }, + { + "path": "multiqc/templates/original/assets/js/multiqc.js", + "sha256": "7159212cab2c9b26ebfee25a0da82ce186c0af89918ccf71b45b177a42d6cb93", + "language": "JavaScript", + "lines": 103, + "truncated": false, + "block": 9, + "row": 2053 + }, + { + "path": "multiqc/templates/original/assets/js/packages/FileSaver.min.js", + "sha256": "14f249b7c9c0fb12f8454ebf82cae203ca7cc4078b19ab68c938e576f40a19d1", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 9, + "row": 2047 + }, + { + "path": "multiqc/templates/original/assets/js/packages/bootstrap.min.js", + "sha256": "53964478a7c634e8dad34ecc303dd8048d00dce4993906de1bacf67f663486ef", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 5, + "row": 15398 + }, + { + "path": "multiqc/templates/original/assets/js/packages/dompurify.min.js", + "sha256": "f263b05369e050fa175d4ecb9c9358eb4253602d510297adfb31df48b2f1c4d5", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2111 + }, + { + "path": "multiqc/templates/original/assets/js/packages/jquery-3.1.1.min.js", + "sha256": "85556761a8800d14ced8fcd41a6b8b26bf012d44a318866c0d81a62092efd9bf", + "language": "JavaScript", + "lines": 4, + "truncated": false, + "block": 9, + "row": 2125 + }, + { + "path": "multiqc/templates/original/assets/js/packages/jquery-ui.min.js", + "sha256": "8963bccf5b1b385956f63a879ba3c395d5dbdb009caa8de004d3d9c60fd3041b", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 9, + "row": 2116 + }, + { + "path": "multiqc/templates/original/assets/js/packages/jquery.tablesorter.min.js", + "sha256": "76d187d57700c8aa2932e8b9c76d0a9cfc6e1ae4b1f51b3aa62241ff83aabba2", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 9, + "row": 2118 + }, + { + "path": "multiqc/templates/original/assets/js/packages/jquery.toast.min.js", + "sha256": "bfaf52c5d3de927cd7cb48644872ff4ab7212ef3bc403412e0ded5e74c44d0ab", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 9, + "row": 2075 + }, + { + "path": "multiqc/templates/original/assets/js/packages/jszip.min.js", + "sha256": "acc7e41455a80765b5fd9c7ee1b8078a6d160bbbca455aeae854de65c947d59e", + "language": "JavaScript", + "lines": 13, + "truncated": false, + "block": 9, + "row": 2127 + }, + { + "path": "multiqc/templates/original/assets/js/packages/pako_inflate.min.js", + "sha256": "fa226c8e1e3556993260e6a5c1fe94e225da59b3418a06811fdc51d308f8bb43", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 9, + "row": 2104 + }, + { + "path": "multiqc/templates/original/assets/js/packages/plotly-2.27.0.js", + "sha256": "2bfe2138694543575950e6d761e8b317cea030f669c65c3ed3eb69560bd4024b", + "language": "JavaScript", + "lines": 6083, + "truncated": true, + "block": 9, + "row": 2130 + }, + { + "path": "multiqc/templates/original/assets/js/packages/plotly-2.27.0.min.js", + "sha256": "69889a12fa0f3440052245df98054193b09c8ef39d4cc9acc4b07728d857c9c6", + "language": "JavaScript", + "lines": 8, + "truncated": true, + "block": 9, + "row": 2133 + }, + { + "path": "multiqc/templates/original/assets/js/packages/showdown.min.js", + "sha256": "470ee76d0054b235f1a0f0e6745ec4c897b5ca402612c63f04098834c345546b", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2121 + }, + { + "path": "multiqc/templates/original/assets/js/plots/bar.js", + "sha256": "5c82dc4d60650c54bc6c00d9924c246eb2739de43db748a4738b1de63e3536c2", + "language": "JavaScript", + "lines": 193, + "truncated": false, + "block": 9, + "row": 2076 + }, + { + "path": "multiqc/templates/original/assets/js/plots/box.js", + "sha256": "c67ba3f17617f33a6b166ba0763423664342097b13cecfd62ecbcc13f7bd9d64", + "language": "JavaScript", + "lines": 210, + "truncated": false, + "block": 9, + "row": 2077 + }, + { + "path": "multiqc/templates/original/assets/js/plots/heatmap.js", + "sha256": "9b8daf6cd7a1ac484abe931b05ac215fc5f7daf0c42fbe6609a150b84d9fc56f", + "language": "JavaScript", + "lines": 190, + "truncated": false, + "block": 9, + "row": 2079 + }, + { + "path": "multiqc/templates/original/assets/js/plots/line.js", + "sha256": "a09cf4f5502bd93f469e02a99628febe2ce8e28e34dc8cd6821db4cd1e8df6e7", + "language": "JavaScript", + "lines": 172, + "truncated": false, + "block": 9, + "row": 2068 + }, + { + "path": "multiqc/templates/original/assets/js/plots/scatter.js", + "sha256": "ecdabaa2d73e9c20361c47fb15c9312ce3a9235a572cb3f91dd8fbcec9e790d4", + "language": "JavaScript", + "lines": 141, + "truncated": false, + "block": 9, + "row": 2067 + }, + { + "path": "multiqc/templates/original/assets/js/plots/violin.js", + "sha256": "e7e1e9a8626511cabf7454c563ae5ca61e87c9fbba7e2450d93ff8366ed0cb2b", + "language": "JavaScript", + "lines": 413, + "truncated": false, + "block": 9, + "row": 2093 + }, + { + "path": "multiqc/templates/original/assets/js/plotting.js", + "sha256": "15dd220a16999cd8832c242da51adad6535176513d69bde4f482c72d145f522c", + "language": "JavaScript", + "lines": 557, + "truncated": false, + "block": 9, + "row": 2101 + }, + { + "path": "multiqc/templates/original/assets/js/render.js", + "sha256": "764e2a6d847a5901e615e3d07cc017119bbafd817cc23fadb8b65fded09a6e34", + "language": "JavaScript", + "lines": 15, + "truncated": false, + "block": 9, + "row": 2022 + }, + { + "path": "multiqc/templates/original/assets/js/tables.js", + "sha256": "45104a2599a4571dba229c406a28ca819f3394d13b4bc3a1034ff6377300a06d", + "language": "JavaScript", + "lines": 599, + "truncated": false, + "block": 9, + "row": 2102 + }, + { + "path": "multiqc/templates/original/assets/js/toolbox.js", + "sha256": "00df89d1103a914d2811841621b05d966ae22841eea9befeacb6adfcdf29603b", + "language": "JavaScript", + "lines": 1860, + "truncated": false, + "block": 9, + "row": 2124 + }, + { + "path": "multiqc/templates/sections/__init__.py", + "sha256": "42e075d93b32df2afd34b4ef316a8b636d04b2224be2602e802515739c8a8fe2", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6766 + }, + { + "path": "multiqc/templates/simple/__init__.py", + "sha256": "b31e0d042cbf2c8de6135dd4eaa235a6888518684d95d7b5958e6d6b879c163f", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6597 + }, + { + "path": "multiqc/types.py", + "sha256": "c69b96cc50fb40a64bcf7335f5154a19bf97d64f25589b03274f95cc4005f0cd", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 9207 + }, + { + "path": "multiqc/utils/__init__.py", + "sha256": "88127b7d85448ddc4a31e4d99e17a94d9db625f3990994e5792d7a57b9cadb28", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6098 + }, + { + "path": "multiqc/utils/config.py", + "sha256": "e16a4fd97f31be02f69d3dcdd5da9ad2a3c4efbe0b3d17c2c6808fdf0d539582", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6544 + }, + { + "path": "multiqc/utils/config_schema.py", + "sha256": "db846d5bbf531adea6df4cd4f6a5ad107d2deaba4d221b2089e19d39957770b5", + "language": "Python", + "lines": 1069, + "truncated": false, + "block": 9, + "row": 12518 + }, + { + "path": "multiqc/utils/material_icons.py", + "sha256": "0cf81bae3201026216cab2db32383983db4479e0723bc3251a66a4f1ed749e47", + "language": "Python", + "lines": 112, + "truncated": false, + "block": 9, + "row": 8860 + }, + { + "path": "multiqc/utils/megaqc.py", + "sha256": "46a85bbb898d420bf06037010c46512704497a972008d987d3c8c80c24704a08", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 8045 + }, + { + "path": "multiqc/utils/mqc_colour.py", + "sha256": "af9d58013feeedb91b913d650577a606bf8e7d1352c1ed11c769c4b34bd48969", + "language": "Python", + "lines": 586, + "truncated": false, + "block": 9, + "row": 11870 + }, + { + "path": "multiqc/utils/pyaml_env.py", + "sha256": "dca9af60b0ffebb3bf1d34fd6a86ae3599f835c25570e2d601ee6e3e52024241", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 9316 + }, + { + "path": "multiqc/utils/report.py", + "sha256": "8848e846b863d50423d1f8066d4098141065e89dbd4289b3a62cb1994d22beb7", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6543 + }, + { + "path": "multiqc/utils/testing.py", + "sha256": "05261aa451656a9eff4e361bb1815ff0132998d8d82e472c4d0205da875eecab", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 9, + "row": 6692 + }, + { + "path": "multiqc/utils/util_functions.py", + "sha256": "26439150a50c52836bd3d8c8c1bb2fbbb336158524b5e001f056c5f31bd9b076", + "language": "Python", + "lines": 393, + "truncated": false, + "block": 9, + "row": 11329 + }, + { + "path": "multiqc/validation.py", + "sha256": "d3b3834a70725043bf137bae658c66c04fe3ac75ee284e4cdba23a836254caa4", + "language": "Python", + "lines": 288, + "truncated": false, + "block": 9, + "row": 10970 + }, + { + "path": "scripts/_config_schema_loader.py", + "sha256": "310f5434e0ba78078f7bf3f9cda96c4827d1d23afd291b11a66bdf6c1205047f", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 8611 + }, + { + "path": "scripts/build-assets.sh", + "sha256": "2a977e5f284839c9de3f9bdbe02c8b91100546b34718b81c2cd9d1f3c3aebc28", + "language": "Shell", + "lines": 42, + "truncated": false, + "block": 9, + "row": 14208 + }, + { + "path": "scripts/copy_material_icons.py", + "sha256": "50ac9f0af23c5ae112f1baf93d203cd9c2618137ab8a5417c66f0d806a062565", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 9, + "row": 9413 + }, + { + "path": "scripts/generate_config_docs.py", + "sha256": "4fc2400de3a05ef43a69bb4fbb144a690c2739a8216854f5cd66e18bd4f06b98", + "language": "Python", + "lines": 503, + "truncated": false, + "block": 9, + "row": 11670 + }, + { + "path": "scripts/generate_config_schema.py", + "sha256": "2e909b8b3a2096f2cbd4d1c277aa8c572ee3ec47dce11c3f75fd7ddde7acc770", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7025 + }, + { + "path": "scripts/generate_config_wizard.py", + "sha256": "41b8781d0f6eb11310b2f123da7a6f4c4f461622934c24daf7b0e477c6d4e6e2", + "language": "Python", + "lines": 179, + "truncated": false, + "block": 9, + "row": 11080 + }, + { + "path": "scripts/make_module_docs.py", + "sha256": "9ca26f3d33607166be3a4f4650130456923e24bd9a43c6713779600771db69f5", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 9, + "row": 9344 + }, + { + "path": "scripts/modules_info.py", + "sha256": "32ed5b539f4ff269ea667d11f46d6b2c068c50ef9765a71719b754ed80587020", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7622 + }, + { + "path": "scripts/post_preview_reports.py", + "sha256": "973c7572165d9b7f26cf3b528eb26c4dbcf5e55156bb777bd127a7fd5fc45b55", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 9, + "row": 10168 + }, + { + "path": "scripts/print_changelog.py", + "sha256": "54c5556c183c7cacc6ec0e5df1bb06ffaff7375b22100e5dc6f448ec9afd9bfb", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 9, + "row": 9740 + }, + { + "path": "scripts/print_missing_csp.py", + "sha256": "5d261973b9885234f4a026abe1dc6411dd5fd53af7409f70ea14d8461355f024", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 7850 + }, + { + "path": "setup.py", + "sha256": "042dcf6ceb957be29cbe2f1149546982d9d5fae490d59f037fabec2fb4e5a807", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 9, + "row": 6398 + }, + { + "path": "tests/conftest.py", + "sha256": "7e6d3cb72c6d53c1f2e5e6d449a7138b9549c8b54b660fb8863ad3053af68c21", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6550 + }, + { + "path": "tests/test_cmdline.py", + "sha256": "a21f093e7d5ed2c3093df01be20e19e7a9ebc02ba6972998b16bf7e071b4dd21", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 8637 + }, + { + "path": "tests/test_config_wizard.py", + "sha256": "d8d67492f74938dc2ca1211025277f25b18146d6b9be18eb19a4e3046f60d92a", + "language": "Python", + "lines": 242, + "truncated": false, + "block": 9, + "row": 10761 + }, + { + "path": "tests/test_custom_configs.py", + "sha256": "16eb0b17848f8098502430df2eec90939a5108cec232f994e58ec1881ec89494", + "language": "Python", + "lines": 166, + "truncated": false, + "block": 9, + "row": 10121 + }, + { + "path": "tests/test_custom_content.py", + "sha256": "033e7ba1e7edcae80e03a8eff91d7a398f3ce0aeac7e99be884279536b9eb8c6", + "language": "Python", + "lines": 996, + "truncated": false, + "block": 9, + "row": 12238 + }, + { + "path": "tests/test_env_vars_config.py", + "sha256": "f113423400fc00ee676969cb2578cc44cf22c25cf1f5836f79951c7c462df5b8", + "language": "Python", + "lines": 144, + "truncated": false, + "block": 9, + "row": 9684 + }, + { + "path": "tests/test_interactive.py", + "sha256": "61f45954c76386085165468ccbf6f96a6ddac037b7bd398534b4189ba4e07b05", + "language": "Python", + "lines": 218, + "truncated": false, + "block": 9, + "row": 10238 + }, + { + "path": "tests/test_modules_run.py", + "sha256": "8e7b8a1424635d09ca41f48a76e13a4ab48be1c0184d8f35a9d670fd42b6bd54", + "language": "Python", + "lines": 243, + "truncated": false, + "block": 9, + "row": 10573 + }, + { + "path": "tests/test_natsort_files.py", + "sha256": "2159ab703e87cf76d9d752894e129563f54938ac14ec250e3f7a99f3153f3987", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 8376 + }, + { + "path": "tests/test_output_options.py", + "sha256": "b476bf8695450e259771f8712570c3d8b3c6ebbc8daea99084edc90d0ecb86f2", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8108 + }, + { + "path": "tests/test_plots.py", + "sha256": "d41efe2146298c3dd13bde68a35f2d89f7cf8fb1d0aa27142799e1363497e4a3", + "language": "Python", + "lines": 1543, + "truncated": false, + "block": 9, + "row": 12516 + }, + { + "path": "tests/test_rerun.py", + "sha256": "9c758240342fd964afd87a0b70c92ef122f28f9bc09d17868da80754e694a080", + "language": "Python", + "lines": 455, + "truncated": false, + "block": 9, + "row": 11709 + }, + { + "path": "tests/test_sample_name_cleaning.py", + "sha256": "219426fcc5eaa7e76376ac6661ce44ec10c66b817cf961b3e2e86bf6f385aa30", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7492 + }, + { + "path": "tests/test_sample_renaming.py", + "sha256": "2a74ca6da524902ebca4680a5379348050ad6bef23b3e9c40109869204e47c6c", + "language": "Python", + "lines": 219, + "truncated": false, + "block": 9, + "row": 10477 + }, + { + "path": "tests/test_search_files.py", + "sha256": "bd51e3c44ea1161d198edf1333721cb56f84fe550c342c48eeb4ab9cc61d7641", + "language": "Python", + "lines": 238, + "truncated": false, + "block": 9, + "row": 10024 + }, + { + "path": "tests/test_section_alerts.py", + "sha256": "4d974462efcc604104f20a9b007c007e0c54ceec23100109892e3be23b0052ed", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 7743 + }, + { + "path": "tests/test_software_versions.py", + "sha256": "10627fa2a0f0ffa50712f5b6567caa9076ac04538a3160731abaeaa4ae860c6f", + "language": "Python", + "lines": 253, + "truncated": false, + "block": 9, + "row": 10459 + } + ] +} \ No newline at end of file diff --git a/manifests/01/zenodo__18876905.json b/manifests/01/zenodo__18876905.json new file mode 100644 index 0000000000000000000000000000000000000000..cac5bc66767d9e7c1f2d01a5def3ba685241e684 --- /dev/null +++ b/manifests/01/zenodo__18876905.json @@ -0,0 +1,21 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18876905", + "url": "10.5281/zenodo.18876905", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.txt", + "sha256": "d881de1af110b16b11c3fe3bab298a6037b03b207c91b6364198ec70cc1eae47", + "language": "Text", + "lines": 18, + "truncated": false, + "block": 9, + "row": 14495 + } + ] +} \ No newline at end of file diff --git a/manifests/02/github.com__arashnasresfahani__nextswin-x.json b/manifests/02/github.com__arashnasresfahani__nextswin-x.json new file mode 100644 index 0000000000000000000000000000000000000000..ee297f9c461f54555dff979ffbe47e330e9ac6c9 --- /dev/null +++ b/manifests/02/github.com__arashnasresfahani__nextswin-x.json @@ -0,0 +1,84 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/arashnasresfahani/nextswin-x", + "url": "https://github.com/ArashNasrEsfahani/NeXtSwin-X", + "host": "github.com", + "commit": "d76ba083a8a9d1b93a8cefecd412c3549dce33ea", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Brain_Tumor_Classification_Ahmed.ipynb", + "sha256": "4c829055eaff1aca6f86311c6844e402a309c2ee79d685cd79cb0d3851612361", + "language": "Jupyter", + "lines": 566, + "truncated": false, + "block": 9, + "row": 2624 + }, + { + "path": "Brain_Tumor_Classification_BRISC.ipynb", + "sha256": "cc19ce4a13936c331a41a2c801e47f75db453cd943ff2733710b0515facb0f15", + "language": "Jupyter", + "lines": 573, + "truncated": false, + "block": 9, + "row": 2615 + }, + { + "path": "Brain_Tumor_Classification_Navoneel.ipynb", + "sha256": "8236d30382bd83e58dd287d1a2a31dd6722cf14bdda0c97f37fc9bee6fdb3b7c", + "language": "Jupyter", + "lines": 555, + "truncated": false, + "block": 9, + "row": 2614 + }, + { + "path": "Brain_Tumor_Classification_Nickparvar.ipynb", + "sha256": "d00d67b59ce4fc3392890d9bc1f995b3e918a602647063f1ad825ce82c320784", + "language": "Jupyter", + "lines": 561, + "truncated": false, + "block": 9, + "row": 2626 + }, + { + "path": "Brain_Tumor_Classification_Orvile.ipynb", + "sha256": "b29cc2af5e2faa23d0df4a1421a7988cffaf743513639eacafff659359770c66", + "language": "Jupyter", + "lines": 549, + "truncated": false, + "block": 9, + "row": 2621 + }, + { + "path": "Brain_Tumor_Classification_Sartaj.ipynb", + "sha256": "ffe1ea72efa32de12fc54dd5c2b98f0972f84788ac038cb5ad217e6e2154787e", + "language": "Jupyter", + "lines": 558, + "truncated": false, + "block": 9, + "row": 2625 + }, + { + "path": "LICENSE", + "sha256": "b611f2fe33be279a4d2589e9c748d311c507198ce34dc0ff418a59cd04a11faf", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2836 + }, + { + "path": "README.md", + "sha256": "1e4262ebc839f08a7923ad0dc17efef14a16fa0c0ef0932310a223ae058fd69a", + "language": "Text", + "lines": 99, + "truncated": false, + "block": 9, + "row": 14667 + } + ] +} \ No newline at end of file diff --git a/manifests/03/zenodo__19333394.json b/manifests/03/zenodo__19333394.json new file mode 100644 index 0000000000000000000000000000000000000000..19d45fee492c0a1d0997691b856741c94c5e5f67 --- /dev/null +++ b/manifests/03/zenodo__19333394.json @@ -0,0 +1,66 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19333394", + "url": "10.5281/zenodo.19333394", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "f6afff160cc0923c0435cb4297c1b5156ac6469cc2ed558ba33bbce2f1646f91", + "language": "Text", + "lines": 6, + "truncated": false, + "block": 9, + "row": 14470 + }, + { + "path": "bt-missing_multivariate.R", + "sha256": "d8a953e894be7633a98c025c75018451b0c043174a58529b33f78ba33e36b605", + "language": "R", + "lines": 562, + "truncated": false, + "block": 9, + "row": 13794 + }, + { + "path": "bt-missing_univariate.R", + "sha256": "0d1099cf0a6286268fc60de07088dd5d18500d829760a0ee3c03c64a425b2623", + "language": "R", + "lines": 336, + "truncated": false, + "block": 9, + "row": 13579 + }, + { + "path": "prepdata_missingBT.R", + "sha256": "070a929b238fd50bf9ee38945ca832f351c81c675abfdc303ab890e97347bfca", + "language": "R", + "lines": 377, + "truncated": false, + "block": 9, + "row": 13665 + }, + { + "path": "quest_GEEcheck.R", + "sha256": "8822fd67503cc0cf9b44aa18a20a221faef3c71722e0bb53f40a35a25926fcba", + "language": "R", + "lines": 93, + "truncated": false, + "block": 9, + "row": 13077 + }, + { + "path": "univariate liability threshold model.R", + "sha256": "77ae76493dd623c56459c0678f68c57cd08e3c04c44e0a67e846ccf3b06fdda9", + "language": "R", + "lines": 297, + "truncated": false, + "block": 9, + "row": 13482 + } + ] +} \ No newline at end of file diff --git a/manifests/03/zenodo__20547384.json b/manifests/03/zenodo__20547384.json new file mode 100644 index 0000000000000000000000000000000000000000..e4ea8c2f884c139ea0324d6cec41844b9e252427 --- /dev/null +++ b/manifests/03/zenodo__20547384.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:20547384", + "url": "https://doi.org/10.5281/zenodo.20547384", + "host": "zenodo.org", + "commit": "", + "license": "CC0-1.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499", + "language": "License", + "lines": 121, + "truncated": false, + "block": 1, + "row": 2210 + }, + { + "path": "README.md", + "sha256": "5b89348eb2ebb5600901d647f0e20f1d23c67dca289938373e0494058f593dcd", + "language": "Text", + "lines": 22, + "truncated": false, + "block": 9, + "row": 14475 + }, + { + "path": "codes/architecturenn.py", + "sha256": "41a68e8317681c409ec21b6922681101f18292e29c73dba26311864ae4296944", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8480 + }, + { + "path": "codes/execute_experiment.py", + "sha256": "171f5a55903ed4ecfb62ff48e3aa7a16e865d88ad49d78a46abb4b259e736f77", + "language": "Python", + "lines": 578, + "truncated": false, + "block": 9, + "row": 12252 + }, + { + "path": "codes/utilsfiletraining.py", + "sha256": "f8d94056b50e64e5b2c23a194710c8ff87b3c0a5b1ac48849e0f102126523188", + "language": "Python", + "lines": 800, + "truncated": false, + "block": 9, + "row": 12289 + } + ] +} \ No newline at end of file diff --git a/manifests/04/github.com__ehobby33__eneuro-repo.json b/manifests/04/github.com__ehobby33__eneuro-repo.json new file mode 100644 index 0000000000000000000000000000000000000000..d537c5ccd227f71821906a2b3f0ea61f1b80c4b2 --- /dev/null +++ b/manifests/04/github.com__ehobby33__eneuro-repo.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ehobby33/eneuro-repo", + "url": "https://github.com/ehobby33/eNeuro-repo.git", + "host": "github.com", + "commit": "8eaada4efebb0bf0a0bd810296773912ad1bd73a", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "47adab349fcb86dcd989779348ea29f9fcbe23d4bf1305e3c02ce6e6fa4f0094", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2775 + }, + { + "path": "README.md", + "sha256": "1e01be1e4989582115b3a0b428e298fb42c3e967df69ab947fc99db8a3637ef5", + "language": "Text", + "lines": 2, + "truncated": false, + "block": 9, + "row": 14449 + }, + { + "path": "eNeuro_paper_code_wgcna_SE2.R", + "sha256": "0fa34cd4a4295c292d4d1e4530b5a9a99afc3257249b1955a6f848cf2cdd478f", + "language": "R", + "lines": 2241, + "truncated": false, + "block": 9, + "row": 13865 + } + ] +} \ No newline at end of file diff --git a/manifests/04/zenodo__19520620.json b/manifests/04/zenodo__19520620.json new file mode 100644 index 0000000000000000000000000000000000000000..aee7be5845a1308061a6e1ca342f856dae15f2d0 --- /dev/null +++ b/manifests/04/zenodo__19520620.json @@ -0,0 +1,273 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19520620", + "url": "https://doi.org/10.5281/zenodo.19520620", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Basecase/AUG.R", + "sha256": "810a5f66a5263272f976bc173adb686da028a1f17f652f6648a441e478ce68b0", + "language": "R", + "lines": 211, + "truncated": false, + "block": 9, + "row": 13391 + }, + { + "path": "Basecase/CEA_Plane.R", + "sha256": "80bb3833038539db88ed2c5b720a6cfa7b21882a44cfcbd896bdc32016a68437", + "language": "R", + "lines": 151, + "truncated": false, + "block": 9, + "row": 13050 + }, + { + "path": "Basecase/COM.R", + "sha256": "aef0f7464a6554dcc2c426d6361403cce1b95a3f2a5ff4476eaf2aaaf7cc5f5e", + "language": "R", + "lines": 211, + "truncated": false, + "block": 9, + "row": 13354 + }, + { + "path": "Basecase/ECT.R", + "sha256": "30b75ecdcb53f92898ec79a3ae349ccac0db462eb2e22ea7b97dfe25c010cec2", + "language": "R", + "lines": 225, + "truncated": false, + "block": 9, + "row": 13388 + }, + { + "path": "Basecase/ESK_Basecase.R", + "sha256": "416c13a3c31cca3103c11076748dbdfd5439352ab62f33a5606d584ff5ab5404", + "language": "R", + "lines": 234, + "truncated": false, + "block": 9, + "row": 13402 + }, + { + "path": "Basecase/TMS.R", + "sha256": "7c2eb3c547c057605aff3349e71c22f230fc24df64d81f7670036198865fd63f", + "language": "R", + "lines": 223, + "truncated": false, + "block": 9, + "row": 13392 + }, + { + "path": "Basecase/cPSY.R", + "sha256": "a16837114edabac86a213404a2acb4afc27d683edce525770bed46982909859f", + "language": "R", + "lines": 221, + "truncated": false, + "block": 9, + "row": 13364 + }, + { + "path": "Basecase/mPSY.R", + "sha256": "6c4a9c9ceb57dd38f073e64509af0dcd6f7deb08fc925bc6f0ee952939e58e16", + "language": "R", + "lines": 225, + "truncated": false, + "block": 9, + "row": 13366 + }, + { + "path": "README.md", + "sha256": "78df2fa22a9c734ab7f4880b9002637e619cf98c6be856b28d80369189e7192b", + "language": "Text", + "lines": 81, + "truncated": false, + "block": 9, + "row": 14541 + }, + { + "path": "Scenario Analysis/AUG_20yrs.R", + "sha256": "ac02ff44b215564e621ad81fb769b18d998124711aae3c4ac828a2eadf6c1375", + "language": "R", + "lines": 276, + "truncated": false, + "block": 9, + "row": 13473 + }, + { + "path": "Scenario Analysis/COM_20yrs.R", + "sha256": "18e9e5b69409046e7d3ea2959c06d89fab15f5563f1dcf019e14bbc95a1e426f", + "language": "R", + "lines": 255, + "truncated": false, + "block": 9, + "row": 13447 + }, + { + "path": "Scenario Analysis/ECT_20yrs.R", + "sha256": "ed6858343502c2bb9a88fb3059f837dc85dfd1ef60de7a913f08606743324af3", + "language": "R", + "lines": 266, + "truncated": false, + "block": 9, + "row": 13478 + }, + { + "path": "Scenario Analysis/ESK_S1.R", + "sha256": "d562e4a5b3ac3bf9ccb4e776b5ad5d96b524f32470d94485bd4e67fb2dffcdb1", + "language": "R", + "lines": 246, + "truncated": false, + "block": 9, + "row": 13431 + }, + { + "path": "Scenario Analysis/ESK_S2.R", + "sha256": "800ef13fdf85872e6a87e400562e31db8d7a3f55433cca71a1a3c14ffe1aa22d", + "language": "R", + "lines": 239, + "truncated": false, + "block": 9, + "row": 13408 + }, + { + "path": "Scenario Analysis/ESK_S3.R", + "sha256": "fa17047be51eb996b2dd75adbae1cf530d25635c09303456a4a2516dffb7c47f", + "language": "R", + "lines": 239, + "truncated": false, + "block": 9, + "row": 13397 + }, + { + "path": "Scenario Analysis/ESK_S4.R", + "sha256": "f4541861b5f7504c8916158e83087a63797997b450126d1b7b05c0c64295caee", + "language": "R", + "lines": 235, + "truncated": false, + "block": 9, + "row": 13411 + }, + { + "path": "Scenario Analysis/ESK_S5.R", + "sha256": "d6d2d2fcb1f8ea8cfda6d4b107df8b17e06ba4e085a2e0ba7d28dd98d957f03b", + "language": "R", + "lines": 230, + "truncated": false, + "block": 9, + "row": 13407 + }, + { + "path": "Scenario Analysis/ESK_S6.R", + "sha256": "b206f1c3af801ed559510fa81924028297ade8b82bd2a2b9c4f4743512f36d15", + "language": "R", + "lines": 232, + "truncated": false, + "block": 9, + "row": 13409 + }, + { + "path": "Scenario Analysis/ESK_S7.R", + "sha256": "cfad21ad58a4b74ec658e371b6b1a46d71fc7df4b8ba51a513eeb08852f4d084", + "language": "R", + "lines": 276, + "truncated": false, + "block": 9, + "row": 13487 + }, + { + "path": "Scenario Analysis/TMS_20yrs.R", + "sha256": "9bbb6856be70c562252a3ee4d7e31994b92f193dcb05427f4abd59be9691c737", + "language": "R", + "lines": 268, + "truncated": false, + "block": 9, + "row": 13472 + }, + { + "path": "Scenario Analysis/cPSY_20yrs.R", + "sha256": "b3d0e7f7063062f2c95dd532ec92a7d94f02d535f30da47ebf5a311a162fc669", + "language": "R", + "lines": 266, + "truncated": false, + "block": 9, + "row": 13462 + }, + { + "path": "Scenario Analysis/mPSY_20yrs.R", + "sha256": "042a5e708dab91cafbdf5ca570964eb8331f6c256eea350ddba360bc0bd0aed0", + "language": "R", + "lines": 265, + "truncated": false, + "block": 9, + "row": 13460 + }, + { + "path": "Sensitivity Analysis/PSA_final.R", + "sha256": "f5229386f41e57e04f708b11923cd902d58095f38bf91c5651bfd55385422b37", + "language": "R", + "lines": 1391, + "truncated": false, + "block": 9, + "row": 13847 + }, + { + "path": "Sensitivity Analysis/SA_AUG.R", + "sha256": "a160cf61aaf198bbd85c451a58a43b59c234f20ee7068cce9af4facd33e52d1d", + "language": "R", + "lines": 521, + "truncated": false, + "block": 9, + "row": 13727 + }, + { + "path": "Sensitivity Analysis/SA_COM.R", + "sha256": "f3198d4d3abc56fb73a393f6715f812fccb20e93737c356272c2f5f5a30f9855", + "language": "R", + "lines": 524, + "truncated": false, + "block": 9, + "row": 13733 + }, + { + "path": "Sensitivity Analysis/SA_ECT.R", + "sha256": "e53a055e0e56a76d0fa32c4b4331c7eca46e7687b3706dc3c06d6efe6911a66c", + "language": "R", + "lines": 544, + "truncated": false, + "block": 9, + "row": 13735 + }, + { + "path": "Sensitivity Analysis/SA_TMS.R", + "sha256": "6474e31fb2cf0852602c25355d5bf2a2f7d34ceb686e0749aeb101148d8d769b", + "language": "R", + "lines": 560, + "truncated": false, + "block": 9, + "row": 13746 + }, + { + "path": "Sensitivity Analysis/SA_cPSY.R", + "sha256": "7304c4ff14ce9c5a823b30000cc66e18155c800484fdb3b043f2afec3a26d5c9", + "language": "R", + "lines": 543, + "truncated": false, + "block": 9, + "row": 13731 + }, + { + "path": "Sensitivity Analysis/SA_mPSY.R", + "sha256": "43dac0fba76f987733f52fbd8226dd26de5f79b3c887a1abfdbe62ca20a0d2b0", + "language": "R", + "lines": 540, + "truncated": false, + "block": 9, + "row": 13730 + } + ] +} \ No newline at end of file diff --git a/manifests/05/github.com__vanvalenlab__deepcell-tf.json b/manifests/05/github.com__vanvalenlab__deepcell-tf.json new file mode 100644 index 0000000000000000000000000000000000000000..c560dbe6b1d87d466c393b5178856c79c1713bc7 --- /dev/null +++ b/manifests/05/github.com__vanvalenlab__deepcell-tf.json @@ -0,0 +1,1038 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/vanvalenlab/deepcell-tf", + "url": "https://github.com/vanvalenlab/deepcell-tf/blob/master/notebooks/applications/Mesmer-Application.ipynb", + "host": "github.com", + "commit": "fa8fe3484c2dd230b470a241833cb9c416872737", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "58e4c8c7deac164874a3147e87ba024577d4cdc16b9a548a8ce0ce8b0b62b1b7", + "language": "License", + "lines": 202, + "truncated": false, + "block": 9, + "row": 2900 + }, + { + "path": "README.md", + "sha256": "a297619828e8f7a5c9d2ccbbd068181a6cde9645941d0230cb3e7d4be4641e21", + "language": "Text", + "lines": 156, + "truncated": false, + "block": 9, + "row": 14713 + }, + { + "path": "deepcell/__init__.py", + "sha256": "43d64ab9bb0e940f756c9bc535f905a716eb1ae46af8dd6f9fad71ae854ab781", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6985 + }, + { + "path": "deepcell/_version.py", + "sha256": "6f1777c0e5f6e0ff5b2b45e9c221904518ac192952fb615566d10b4471db5478", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 9, + "row": 6613 + }, + { + "path": "deepcell/applications/__init__.py", + "sha256": "8b0ec7fa58a523ba54293bca510406f0bae160ea855efdee966dbc20b82c603f", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 9, + "row": 6745 + }, + { + "path": "deepcell/applications/application.py", + "sha256": "b4a4acb9d140acf16021b5f6bb67a06f20fa37bf56fd19fefa5167af33ec2006", + "language": "Python", + "lines": 426, + "truncated": false, + "block": 9, + "row": 11635 + }, + { + "path": "deepcell/applications/application_test.py", + "sha256": "211123ced6ecd5d65fbeb60c6290732e29e5c561151da6e11dced670c98169a8", + "language": "Python", + "lines": 303, + "truncated": false, + "block": 9, + "row": 10750 + }, + { + "path": "deepcell/applications/cell_tracking.py", + "sha256": "0264bbe9c376293b1044facdb10ab82c286048ff87d5cc6b95fa104e4a8710b3", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 9, + "row": 9995 + }, + { + "path": "deepcell/applications/cell_tracking_test.py", + "sha256": "044e2768c8b162c6ec22acc122b133355a3db618916532bec770f860e09382d3", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7649 + }, + { + "path": "deepcell/applications/cytoplasm_segmentation.py", + "sha256": "a5e0aa068ffde0fe2daa2920231a3c939657f75ce9c4cb2206e5bd0c908965b3", + "language": "Python", + "lines": 144, + "truncated": false, + "block": 9, + "row": 9352 + }, + { + "path": "deepcell/applications/cytoplasm_segmentation_test.py", + "sha256": "7c850b613838da8690ac29a32cd368c1b2d240eb1b37a75e6368879625b14343", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7236 + }, + { + "path": "deepcell/applications/label_detection.py", + "sha256": "d0f14837a0013a50e8034151c8494d8cea8261333ee125dd4d1258ee453b8c25", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 9, + "row": 9846 + }, + { + "path": "deepcell/applications/label_detection_test.py", + "sha256": "17686f338dce1a2da28d9d166a27d91f271e123313459be3da8ac111277b1c85", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 7749 + }, + { + "path": "deepcell/applications/mesmer.py", + "sha256": "8d8927100b6d4eb24c8477fd1fb3822a2e23328c0df97fc7ea4995cf1ade1ebe", + "language": "Python", + "lines": 287, + "truncated": false, + "block": 9, + "row": 10827 + }, + { + "path": "deepcell/applications/mesmer_test.py", + "sha256": "3a35145349a4278fa5a62af6c54a25b1381bef1ed2b5c21b7834853c12aa4668", + "language": "Python", + "lines": 237, + "truncated": false, + "block": 9, + "row": 10584 + }, + { + "path": "deepcell/applications/multiplex_segmentation.py", + "sha256": "2edb267819e87e1662d9f5a5958d96cac4eb1365c56fd0d0094351a6be3f9dcf", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 9, + "row": 6415 + }, + { + "path": "deepcell/applications/nuclear_segmentation.py", + "sha256": "b2c174d017a084af0b8c4b2cc08f2632a7b66575345203a135c1a07e77702117", + "language": "Python", + "lines": 199, + "truncated": false, + "block": 9, + "row": 9937 + }, + { + "path": "deepcell/applications/nuclear_segmentation_test.py", + "sha256": "1fafb08ad24ed22afab23adf701af4ddb9ae5c7bd3d8fdfcfd30d91a6c7b51b4", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7230 + }, + { + "path": "deepcell/applications/scale_detection.py", + "sha256": "67170ba38e3daf6f93e3697847b5e7553245196bb8584f65ae977a89a56f4eff", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 9, + "row": 9807 + }, + { + "path": "deepcell/applications/scale_detection_test.py", + "sha256": "8d1b0731c33e37a74af0c0365ead91ff17a8d751c390b34720d66b9021b72d22", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 7703 + }, + { + "path": "deepcell/callbacks.py", + "sha256": "542a593fe24dd32914317ceb6fee7724a0a63ba5a3ed4c3ea0a67db7002babd3", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7563 + }, + { + "path": "deepcell/callbacks_test.py", + "sha256": "f36944cb536784e44899eabe774e4b60e2f7d3c595b1b0a986c3f128a7888a5d", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7121 + }, + { + "path": "deepcell/data/__init__.py", + "sha256": "1751c84dcaf355eb71ec90f24e6a5f3efc8cd620a26789b8c2061e9af03d50b0", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7816 + }, + { + "path": "deepcell/data/tracking.py", + "sha256": "036a262f502b14c58230939b96e8333333e95f6bc40e629a0ca9aa34f68427f3", + "language": "Python", + "lines": 442, + "truncated": false, + "block": 9, + "row": 11581 + }, + { + "path": "deepcell/data/tracking_test.py", + "sha256": "75735c3a32bfb0d32c1e7fbe83cddb5375256b95f429566977db2a8d26edd256", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 9, + "row": 10748 + }, + { + "path": "deepcell/datasets/__init__.py", + "sha256": "583ed0568864fe45b65d2257980215c9c698a7060bda5f4d1820b934d8687f74", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6492 + }, + { + "path": "deepcell/datasets/dataset.py", + "sha256": "3845efa7ede0655cc33bd0e3cad3fdf95ab19a0a0f2f4594cd34449715d023f1", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 9, + "row": 9713 + }, + { + "path": "deepcell/datasets/dataset_test.py", + "sha256": "7d85501a4b6b341ff02b5e98bc2a60e5f9f60d807546984c4b214fdd30fc8468", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 9, + "row": 8910 + }, + { + "path": "deepcell/datasets/dynamic_nuclear_net.py", + "sha256": "20fbd412222c45bbb17357b215753b02d2b041bf6ebbe3b710a033bed3fb8f8b", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 9253 + }, + { + "path": "deepcell/datasets/spot_net.py", + "sha256": "cf6f3c1320103362208f0d6b32785bca067e98a17d664a30ab371299c3a070d8", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 9, + "row": 9081 + }, + { + "path": "deepcell/datasets/tissue_net.py", + "sha256": "6a6732a2f7363e0edd048437546abd8b4c9e6ffca05063ba6d48f5724b65a1c4", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 9, + "row": 8632 + }, + { + "path": "deepcell/image_generators/__init__.py", + "sha256": "e4995b6979c83333d89ea07d3a86b8cb6b270b250277b2eac637b21df4b78f23", + "language": "Python", + "lines": 269, + "truncated": false, + "block": 9, + "row": 10915 + }, + { + "path": "deepcell/image_generators/cropping.py", + "sha256": "035cb5ff23f13a866e0517a168d112e7a9b5563e362c3cb33c930363e2fc1571", + "language": "Python", + "lines": 468, + "truncated": false, + "block": 9, + "row": 11854 + }, + { + "path": "deepcell/image_generators/fully_convolutional.py", + "sha256": "65a1d7b8a18cb31e323b098251603de73bf132478e696e4c2e97a1cb62968ba7", + "language": "Python", + "lines": 729, + "truncated": false, + "block": 9, + "row": 12255 + }, + { + "path": "deepcell/image_generators/image_generators_test.py", + "sha256": "f7a7c54ef9a02a36f0eaf6ff5a624cbf287e1b465ace69fd9f01924f21780b6a", + "language": "Python", + "lines": 2490, + "truncated": false, + "block": 9, + "row": 12651 + }, + { + "path": "deepcell/image_generators/sample.py", + "sha256": "f8e600b1c8512ab43e3e146b27e1102fad592d66cebcc20247e13218a7412b4e", + "language": "Python", + "lines": 668, + "truncated": false, + "block": 9, + "row": 12196 + }, + { + "path": "deepcell/image_generators/scale.py", + "sha256": "f4e423c84159c18d390b09d07b0f8a9bec0cfae1795f60e15319224a020d1690", + "language": "Python", + "lines": 257, + "truncated": false, + "block": 9, + "row": 10985 + }, + { + "path": "deepcell/image_generators/semantic.py", + "sha256": "cae8c2ed1fdfb9f481d82267b267c7d3635c35dbd20fef604a78b598d8a3849c", + "language": "Python", + "lines": 1641, + "truncated": false, + "block": 9, + "row": 12580 + }, + { + "path": "deepcell/image_generators/tracking.py", + "sha256": "6bd9b81a664e38e16618d023f1db7c0848925a2e7c534a1a44ba5427f94d55bd", + "language": "Python", + "lines": 937, + "truncated": false, + "block": 9, + "row": 12428 + }, + { + "path": "deepcell/layers/__init__.py", + "sha256": "9c671d3eaca9e36e6d3ac4eff09640ec16d5a98aa8a90c43f04f15b3ece6fe4b", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 7020 + }, + { + "path": "deepcell/layers/location.py", + "sha256": "986f0f9b907073790ff2f89485d08a61cecd77cabeac6fb975f9af5e52c623b6", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 9582 + }, + { + "path": "deepcell/layers/location_test.py", + "sha256": "b3e6d2598bcb228cf5aed890bbbb146cb05b7133e19334d583c3c582de48cbbe", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7412 + }, + { + "path": "deepcell/layers/normalization.py", + "sha256": "db8904436df90af5e13c93cf1a79adb029d4681039ce6d101e3518ca1a970ecf", + "language": "Python", + "lines": 380, + "truncated": false, + "block": 9, + "row": 11600 + }, + { + "path": "deepcell/layers/normalization_test.py", + "sha256": "c5aaa0ecafdd31b2adb81ada4310529719d91ccdeba0c9923e694685d4d6cdac", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 9198 + }, + { + "path": "deepcell/layers/padding.py", + "sha256": "08a94b1bb9ba02192cf003ee31dcd6498528ca3f695dfb2a81b281fd3640b8ab", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 8563 + }, + { + "path": "deepcell/layers/padding_test.py", + "sha256": "97774c597efa74b5d5991438e4f08e9fbe70312a0510a45c01b42d59c940f4f3", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 10073 + }, + { + "path": "deepcell/layers/pooling.py", + "sha256": "0e9d83ad37fe3e1cd4fb6c7657a131e34bde720624d68190a807d8c2f735609e", + "language": "Python", + "lines": 298, + "truncated": false, + "block": 9, + "row": 11177 + }, + { + "path": "deepcell/layers/pooling_test.py", + "sha256": "c10f7297774051af7e42a52b6d6f4617b9a38497da6e945740fe2d550ca4cd69", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 8586 + }, + { + "path": "deepcell/layers/temporal.py", + "sha256": "775463f07603ef78f7f1371c752a7cf9ea68f2be9a084debde94d83419914dac", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8298 + }, + { + "path": "deepcell/layers/temporal_test.py", + "sha256": "afe8a1201507d9c8b941eb54f2eba61add20501b9eb8404e17fed5c1c5d25fa1", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 9, + "row": 8911 + }, + { + "path": "deepcell/layers/tensor_product.py", + "sha256": "c7bb81e8abffad1da996956edc88b54221f5131d072feef7f2be4af3fe13b012", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 9, + "row": 10426 + }, + { + "path": "deepcell/layers/tensor_product_test.py", + "sha256": "ca001f85adfde5d0d56d3fb6ff1fe2350e9e909bcb5982d47770be2d1479825b", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8373 + }, + { + "path": "deepcell/layers/upsample.py", + "sha256": "627cc300e0b3f5013d1f57c2e684aac3e64f33291e08e67e2150a97ef61b68fc", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 9270 + }, + { + "path": "deepcell/layers/upsample_test.py", + "sha256": "a52015895fdef6062d34af1da4eeb77c7a6d5bbe153fc191f85cd6b6a3c93e8e", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 8940 + }, + { + "path": "deepcell/losses.py", + "sha256": "dad481e73b290701920d46ec2af076369d60f6cf0373b7468ff1cb3cf29388a5", + "language": "Python", + "lines": 293, + "truncated": false, + "block": 9, + "row": 11110 + }, + { + "path": "deepcell/losses_test.py", + "sha256": "3f0083b14b88b81e2f3924e63a3f0201f5b339356c30f35ad55b401c2181763f", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7332 + }, + { + "path": "deepcell/metrics.py", + "sha256": "d0ad362740222f5f1154d8c7d13fbb911a04baa3a6d24f756684d4c54129c1d1", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 9, + "row": 6521 + }, + { + "path": "deepcell/model_zoo/__init__.py", + "sha256": "a611130b59f8672c08b55446b7968df0342f85a9587c641f44e594e5705d6333", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6623 + }, + { + "path": "deepcell/model_zoo/featurenet.py", + "sha256": "f317b544cdb378b41a9e370f9e5c3b28bff06c2770425aa1fe7de26dcc652008", + "language": "Python", + "lines": 550, + "truncated": false, + "block": 9, + "row": 11908 + }, + { + "path": "deepcell/model_zoo/featurenet_test.py", + "sha256": "ebdc92f8f99321eafdeb63e86924c2e0acf4a19ae19985e09f039bb3bd790d08", + "language": "Python", + "lines": 522, + "truncated": false, + "block": 9, + "row": 11690 + }, + { + "path": "deepcell/model_zoo/fpn.py", + "sha256": "724e242ccafa618de925021b635da18149080dfcd76c909e9d1ab0ef3724d1dc", + "language": "Python", + "lines": 508, + "truncated": false, + "block": 9, + "row": 11895 + }, + { + "path": "deepcell/model_zoo/panopticnet.py", + "sha256": "256ab545109bec1b5e52cf925e73a4f3e34bb7217de2fd60cedbd88605f4ceb9", + "language": "Python", + "lines": 284, + "truncated": false, + "block": 9, + "row": 11058 + }, + { + "path": "deepcell/model_zoo/panopticnet_test.py", + "sha256": "f9eb44d8cb5f3214b4b58813c65ee4aab928623e7bf0d82e389f45fef58a386e", + "language": "Python", + "lines": 405, + "truncated": false, + "block": 9, + "row": 11305 + }, + { + "path": "deepcell/model_zoo/tracking.py", + "sha256": "fe01d671aa07f896e6dcfa7e4346384406ccb8ea899e7fc4e273ff07bda3722a", + "language": "Python", + "lines": 601, + "truncated": false, + "block": 9, + "row": 12113 + }, + { + "path": "deepcell/model_zoo/tracking_test.py", + "sha256": "9789144cecc4d46bf29d5fe0fdfd0d09cbb984b7889a9fb0cecf6ce1a8d72d7c", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 9, + "row": 6487 + }, + { + "path": "deepcell/running.py", + "sha256": "71d73093db4611e93ab15f667f0aedae1d3e3514619357dc5b05672593a6b6c8", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 9, + "row": 10144 + }, + { + "path": "deepcell/running_test.py", + "sha256": "43fec39ea8b3df1d7beaa6cb6c0e5b577c7a8816fe26b5b168864646bc8284af", + "language": "Python", + "lines": 178, + "truncated": false, + "block": 9, + "row": 9820 + }, + { + "path": "deepcell/tracking.py", + "sha256": "d2d55c3641124ca6c5b42151d9e91860ab2684c3b917c760b98cb9b5271e86f6", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6416 + }, + { + "path": "deepcell/training.py", + "sha256": "b865c3505dab456de777696f49d98fb9f8b5992105a858a64fe825d3e6791e4e", + "language": "Python", + "lines": 564, + "truncated": false, + "block": 9, + "row": 11956 + }, + { + "path": "deepcell/utils/__init__.py", + "sha256": "28162f674ae42e43b155730ada9e5e7bdff6c74904dbb45544e2307b2b7a1bb4", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7805 + }, + { + "path": "deepcell/utils/_auth.py", + "sha256": "ed8e4c8c65b03c3c7da53721ff94a172466946849fd8a9bdee3ffc1d71ef4f6a", + "language": "Python", + "lines": 173, + "truncated": false, + "block": 9, + "row": 9876 + }, + { + "path": "deepcell/utils/backbone_utils.py", + "sha256": "819bb6f832b249cec432e28b69662704ae4cc5a392d95514388eee5a80541d57", + "language": "Python", + "lines": 458, + "truncated": false, + "block": 9, + "row": 11764 + }, + { + "path": "deepcell/utils/backbone_utils_test.py", + "sha256": "bc4e6c86c861c4e3e41bf2a81454a2bdae32a36d717863b21209fb1b222cdf07", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 9, + "row": 9116 + }, + { + "path": "deepcell/utils/data_utils.py", + "sha256": "5a9700e035d3690b0f8852c8a81f9365360fad7bd2fa25176c481d374d687824", + "language": "Python", + "lines": 481, + "truncated": false, + "block": 9, + "row": 11783 + }, + { + "path": "deepcell/utils/data_utils_test.py", + "sha256": "ba3fb249a977d9a8abfda2d7a8a1ecdb7212bd4efaa8fc39087bff4cc3d69c33", + "language": "Python", + "lines": 494, + "truncated": false, + "block": 9, + "row": 11953 + }, + { + "path": "deepcell/utils/export_utils.py", + "sha256": "47ffc4cf625ba9a41e93cfb0f0de455caaa86d3af754d0009e60aa26b7871946", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 9, + "row": 9343 + }, + { + "path": "deepcell/utils/io_utils.py", + "sha256": "27987874d7de8150e2ffd283bb6575d5f05d08202feef9e7b5856d8e5e484dc0", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 8384 + }, + { + "path": "deepcell/utils/io_utils_test.py", + "sha256": "f639dbf022c66ebf7fa4d4470fac7d81601d34178501ecc4376287cce8bdcb2c", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 7985 + }, + { + "path": "deepcell/utils/misc_utils.py", + "sha256": "58636a290efdc0de03dce0e6e5792060e0c8697c98fe6b9c6c3786d95e5bf908", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 6993 + }, + { + "path": "deepcell/utils/misc_utils_test.py", + "sha256": "1322022cdfb75bba4fe96df46a8f1f6cf8a29f9a2bb5774306f61ad4d50dc527", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6959 + }, + { + "path": "deepcell/utils/plot_utils.py", + "sha256": "1301460729dc3bfffe9211ee622b164d6ec9d0a774e70687de3eac6c2c7d70d9", + "language": "Python", + "lines": 247, + "truncated": false, + "block": 9, + "row": 10569 + }, + { + "path": "deepcell/utils/plot_utils_test.py", + "sha256": "a031f2eb70754eba163ec46f0150608c8377c680a7f18ca88853765e75117e6e", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 9, + "row": 8809 + }, + { + "path": "deepcell/utils/tfrecord_utils.py", + "sha256": "2968fcdb862751bfff38bb3e44954e5450f26b82210ef8758bdfd0655a9ac1b8", + "language": "Python", + "lines": 508, + "truncated": false, + "block": 9, + "row": 11500 + }, + { + "path": "deepcell/utils/tfrecord_utils_test.py", + "sha256": "99a3c46542cd884603cffacbe4d351ea2e81c77fe5a195d85685b3ced6bf72ef", + "language": "Python", + "lines": 272, + "truncated": false, + "block": 9, + "row": 10522 + }, + { + "path": "deepcell/utils/tracking_utils.py", + "sha256": "aaa0ea459b75163f13626bd09a098c5d2da9b45f1c7423d793c328936a263935", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 9, + "row": 6574 + }, + { + "path": "deepcell/utils/train_utils.py", + "sha256": "e24aa6be5c202a89f4ace37f15e63b4ea1046f9fa624eadb6e752dfb2fa8883f", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8160 + }, + { + "path": "deepcell/utils/train_utils_test.py", + "sha256": "4d084119c9066b316cb3b5c5b7a894c5f192eaed4cadb6d5e077080af9f9f35c", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7633 + }, + { + "path": "deepcell/utils/transform_utils.py", + "sha256": "0edb2b8af1f3c4547261cdc3d17d4b6384cc164114ff2da92f1ed2e279f08a66", + "language": "Python", + "lines": 404, + "truncated": false, + "block": 9, + "row": 11479 + }, + { + "path": "deepcell/utils/transform_utils_test.py", + "sha256": "870bcbd72ba26f84671756e05ca4afbc8b6f4694ca9779450dbb326b538d8cc5", + "language": "Python", + "lines": 417, + "truncated": false, + "block": 9, + "row": 11766 + }, + { + "path": "docs/source/applications/caliban.py", + "sha256": "b170a8f1af07a248daabacfa2d6b9c78b985b382981eff1c1b80870a5608af1d", + "language": "Python", + "lines": 219, + "truncated": false, + "block": 9, + "row": 9964 + }, + { + "path": "docs/source/applications/mesmer.py", + "sha256": "5a0dcffe9c449105b5f5161cc995231189d04bb9df81f5f6e2ca1330b726cfb3", + "language": "Python", + "lines": 273, + "truncated": false, + "block": 9, + "row": 10423 + }, + { + "path": "docs/source/conf.py", + "sha256": "403525daa23a3a9e1ac3aadc4f10611260f864bb4f45ffec5cf49a4f00125dff", + "language": "Python", + "lines": 309, + "truncated": false, + "block": 9, + "row": 10738 + }, + { + "path": "docs/source/datasets/dynamicnuclearnet.py", + "sha256": "9e4590a2b4a7e5efb726ebdc239e93e4db9d1dcd869c7e4756394ac5c6b17bb1", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7501 + }, + { + "path": "docs/source/datasets/spotnet.py", + "sha256": "818c6cfbd3e1cd9dae8a7172efe782af4f87a9a740ce8147bcec295a4347c8a7", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6903 + }, + { + "path": "docs/source/datasets/tissuenet.py", + "sha256": "5d7dc50c9b2afd386bb06a13a15d8b38dd0e589882c0488009d1826e3c9a8725", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7932 + }, + { + "path": "notebooks/applications/Caliban-Application.ipynb", + "sha256": "7cd4c8b8e16135267afd521b6d1b690ad533f78372137703b8feb3010985b9db", + "language": "Jupyter", + "lines": 204, + "truncated": false, + "block": 9, + "row": 2392 + }, + { + "path": "notebooks/applications/Cytoplasm-Application.ipynb", + "sha256": "6fa3e5022892ac9642ea73552e3f3fcec8a624fcadbb6314a7b7dee3271a135c", + "language": "Jupyter", + "lines": 69, + "truncated": false, + "block": 9, + "row": 2231 + }, + { + "path": "notebooks/applications/Mesmer-Application.ipynb", + "sha256": "80ac38b61929c4d6de6d9037ca7ef4470f593bc7008edd0e1aa4c57dfa62d88e", + "language": "Jupyter", + "lines": 172, + "truncated": false, + "block": 9, + "row": 2413 + }, + { + "path": "notebooks/training/featurenets/Discriminative Loss 2D with FG-BG Separation.ipynb", + "sha256": "e9b41e54d3662093854039dfd475170425f76dd8398eb396dbcf93125d028de1", + "language": "Jupyter", + "lines": 648, + "truncated": false, + "block": 9, + "row": 2647 + }, + { + "path": "notebooks/training/featurenets/Discriminative Loss 3D with FG-BG Separation.ipynb", + "sha256": "31374c4ffddf248a1954e2b558af468a2085928701ab1642c59f6e0fdb6df17f", + "language": "Jupyter", + "lines": 459, + "truncated": false, + "block": 9, + "row": 2580 + }, + { + "path": "notebooks/training/featurenets/Interior-Edge Segmentation 2D Fully Convolutional.ipynb", + "sha256": "042aeaf35c71aa63cafdf593ccc886847b4b6c0c40cf2281f00b8669b022c8c9", + "language": "Jupyter", + "lines": 407, + "truncated": false, + "block": 9, + "row": 2532 + }, + { + "path": "notebooks/training/featurenets/Interior-Edge Segmentation 2D Sample Based.ipynb", + "sha256": "92c65e0f2d58335e323e5316a319caf7059841f9aa38e491ae9c925a495d8e2e", + "language": "Jupyter", + "lines": 418, + "truncated": false, + "block": 9, + "row": 2545 + }, + { + "path": "notebooks/training/featurenets/Interior-Edge Segmentation 3D Fully Convolutional.ipynb", + "sha256": "1ea0d167b8b18924eaf838ee3ca73dedc4245294b2ebb276597093207ed3e5b2", + "language": "Jupyter", + "lines": 437, + "truncated": false, + "block": 9, + "row": 2555 + }, + { + "path": "notebooks/training/featurenets/Interior-Edge Segmentation 3D Sample Based.ipynb", + "sha256": "636c6e8889fa78d99448352257f525faf10b69c2b35bfbe8a5997c34a7a72213", + "language": "Jupyter", + "lines": 425, + "truncated": false, + "block": 9, + "row": 2553 + }, + { + "path": "notebooks/training/featurenets/Watershed Transform 2D Fully Convolutional.ipynb", + "sha256": "2ad777f7df62402dfc76e56bc594fbe3a05441da4877e92270488f836ca95a3c", + "language": "Jupyter", + "lines": 434, + "truncated": false, + "block": 9, + "row": 2554 + }, + { + "path": "notebooks/training/featurenets/Watershed Transform 2D Sample Based.ipynb", + "sha256": "be1f529c0c939aa6e9e76c617c9954b291ada6d43f359195babe3eca01306d7c", + "language": "Jupyter", + "lines": 433, + "truncated": false, + "block": 9, + "row": 2559 + }, + { + "path": "notebooks/training/featurenets/Watershed Transform 3D Fully Convolutional.ipynb", + "sha256": "e31d1f57cc175da5cbcc95676443395ecea45bf6c06d85911f0dcc3a868e3cbf", + "language": "Jupyter", + "lines": 460, + "truncated": false, + "block": 9, + "row": 2570 + }, + { + "path": "notebooks/training/featurenets/Watershed Transform 3D Sample Based.ipynb", + "sha256": "0905cfde3c937ae42c804748e2f1f3ae7dfb3b464f36b32257cd0be71cd6a4bc", + "language": "Jupyter", + "lines": 443, + "truncated": false, + "block": 9, + "row": 2569 + }, + { + "path": "notebooks/training/misc/Label-Detection-Model.ipynb", + "sha256": "498c4ef0f21ef0fa51b7fe502df71c257088ff48afb98230dd97b360cfd412aa", + "language": "Jupyter", + "lines": 212, + "truncated": false, + "block": 9, + "row": 2376 + }, + { + "path": "notebooks/training/misc/Scale-Detection-Model.ipynb", + "sha256": "4c6fae3a589e99ef0da883142bfd61d4832f3356f54c22bce25cb5f968a40e71", + "language": "Jupyter", + "lines": 199, + "truncated": false, + "block": 9, + "row": 2360 + }, + { + "path": "notebooks/training/panopticnets/3D Nuclear Segmentation - Deep Watershed.ipynb", + "sha256": "91111250b66676a1b45005dfcd3e2630c3140b083ffffbc83ff255665deaf559", + "language": "Jupyter", + "lines": 587, + "truncated": false, + "block": 9, + "row": 2656 + }, + { + "path": "notebooks/training/panopticnets/Nuclear Segmentation - DeepWatershed.ipynb", + "sha256": "9adef978fd5288772d1efde3098b3e524789b89424282b087439291371fe7d4a", + "language": "Jupyter", + "lines": 372, + "truncated": false, + "block": 9, + "row": 2487 + }, + { + "path": "notebooks/training/tracking/Training and Tracking with GNNs.ipynb", + "sha256": "0594d8a88525fa8c24f602abee87561ce50e7b17758f10b2384c9b377dd9e973", + "language": "Jupyter", + "lines": 388, + "truncated": false, + "block": 9, + "row": 2502 + }, + { + "path": "setup.py", + "sha256": "8319abc4c9afbd1a86569cbb412886db60dd4b20efe679f704fee04b1bece6e0", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 8082 + } + ] +} \ No newline at end of file diff --git a/manifests/06/github.com__sotlampr__rhizovisionexplorer.json b/manifests/06/github.com__sotlampr__rhizovisionexplorer.json new file mode 100644 index 0000000000000000000000000000000000000000..e55a2af3269e73acd694bf11a6aee3b31673eca9 --- /dev/null +++ b/manifests/06/github.com__sotlampr__rhizovisionexplorer.json @@ -0,0 +1,174 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/sotlampr/rhizovisionexplorer", + "url": "https://github.com/sotlampr/RhizoVisionExplorer", + "host": "github.com", + "commit": "a08860c328ac8e86a04e2db2efd9127871a1441c", + "license": "GPL-3.0", + "license_confirmed_by": "license file COPYING", + "redistribution": "yes", + "files": [ + { + "path": "COPYING", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "2939d8268af85634daab96be1ce9ec9eb7515620aa06785bb93ef15b8fbccb1c", + "language": "Text", + "lines": 68, + "truncated": false, + "block": 9, + "row": 14612 + }, + { + "path": "RhizoVisionExplorer/MainUI.cpp", + "sha256": "a895d484878def5b7b5602b7a6fc37cc2235000080ec37c47822df827dddd1b0", + "language": "C++", + "lines": 2153, + "truncated": false, + "block": 9, + "row": 1087 + }, + { + "path": "RhizoVisionExplorer/MainUI.h", + "sha256": "5b260f874bf1a4b7ffd0822a30bde91f1226e8ade9a11b874bbf9ef6f7e92962", + "language": "C/C++", + "lines": 234, + "truncated": false, + "block": 9, + "row": 1635 + }, + { + "path": "RhizoVisionExplorer/common_types.h", + "sha256": "4f39f392d8a1202a2d8d116d7e9d7ab8d07413c848b9ccf897f86c80014bdbf1", + "language": "C/C++", + "lines": 64, + "truncated": false, + "block": 9, + "row": 1252 + }, + { + "path": "RhizoVisionExplorer/demo.h", + "sha256": "871ed7f8d938faed95bc40867e69d5873a49c5e84f11138d56786b9c2f3fe183", + "language": "C/C++", + "lines": 274, + "truncated": false, + "block": 9, + "row": 1638 + }, + { + "path": "RhizoVisionExplorer/feature_config.h", + "sha256": "50298c74e7e3d5a3d22ee7512fa39ab2111ab8b1d199641edb7a091bfba2539b", + "language": "C/C++", + "lines": 140, + "truncated": false, + "block": 9, + "row": 1499 + }, + { + "path": "RhizoVisionExplorer/feature_extraction.cpp", + "sha256": "8d4e257575c948e75a018f59bae053034689f630a9cd7ca4f1386e5da05160dc", + "language": "C++", + "lines": 1662, + "truncated": false, + "block": 9, + "row": 1057 + }, + { + "path": "RhizoVisionExplorer/feature_extraction.h", + "sha256": "1b428c469af270d29d0419d97573ae15a42793f5da63a5ccbc02405da05d2cda", + "language": "C/C++", + "lines": 56, + "truncated": false, + "block": 9, + "row": 1205 + }, + { + "path": "RhizoVisionExplorer/main.cpp", + "sha256": "5172a90282376edd3ae9cfbc99be621c2f142a4e26c54e2e187736eee4563c4b", + "language": "C++", + "lines": 108, + "truncated": false, + "block": 9, + "row": 401 + }, + { + "path": "RhizoVisionExplorer/resource.h", + "sha256": "886893f337c4c2c7bb91728ff8f4889bb9d9281cbb400c9ea73cffb0fe7aae75", + "language": "C/C++", + "lines": 16, + "truncated": false, + "block": 9, + "row": 1139 + }, + { + "path": "RhizoVisionExplorer/rootsegmentprop.cpp", + "sha256": "beb2554df74d4400ca3b3102559e3758b64b91f5435b288572dd472bf93e4b4a", + "language": "C++", + "lines": 534, + "truncated": false, + "block": 9, + "row": 890 + }, + { + "path": "RhizoVisionExplorer/rootsegmentprop.h", + "sha256": "d6090085b9e031e68530742ab1fe0fff7dd515db17ced5e426e31ce3f4521bd0", + "language": "C/C++", + "lines": 47, + "truncated": false, + "block": 9, + "row": 1271 + }, + { + "path": "RhizoVisionExplorer/roottopology.cpp", + "sha256": "f8be48dc09494d1bc86ea895b8c53d980b993ea79d7b8f65e7e48b1b0d8b0f48", + "language": "C++", + "lines": 1533, + "truncated": false, + "block": 9, + "row": 1064 + }, + { + "path": "RhizoVisionExplorer/roottopology.h", + "sha256": "e7f41186607eb2a26c36a58a84f7bc2bb0008ece7a49d9f938c10c379c8bcfcb", + "language": "C/C++", + "lines": 47, + "truncated": false, + "block": 9, + "row": 1294 + }, + { + "path": "RhizoVisionExplorer/rv.cpp", + "sha256": "d5be4b83ff59bf18491fb15176cf34a96a7b21326a2e8d8c53e7c74dc5b84fcb", + "language": "C++", + "lines": 1250, + "truncated": false, + "block": 9, + "row": 1052 + }, + { + "path": "build.sh", + "sha256": "284071191c3879616049388c5371a94e4f46dd84a96abd8658e8fd9ef08116d8", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 9, + "row": 13984 + }, + { + "path": "tests/test_rve_cli.py", + "sha256": "af176b4a65da58dd8d528aadf56ee2d73ca5a26c034e93f4dbe5ee6f82d6799b", + "language": "Python", + "lines": 791, + "truncated": false, + "block": 9, + "row": 12344 + } + ] +} \ No newline at end of file diff --git a/manifests/07/github.com__sanju99__mtbquantcnn.json b/manifests/07/github.com__sanju99__mtbquantcnn.json new file mode 100644 index 0000000000000000000000000000000000000000..ec81a5d4b06527bd446efe1bb1c34a138ed93c21 --- /dev/null +++ b/manifests/07/github.com__sanju99__mtbquantcnn.json @@ -0,0 +1,426 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/sanju99/mtbquantcnn", + "url": "https://github.com/sanju99/MtbQuantCNN", + "host": "github.com", + "commit": "24ca45d159134252191fa08f6396d5cf4b138b81", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "850f4c3d5d39db326ff2ab294b570e078752133354560dbf2807a9f6f978f798", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2823 + }, + { + "path": "MIC_data/data_curation_normalization.ipynb", + "sha256": "4b78dab51a7e912a7343399b28590ca8a10313920fc3abc86cabb3faf23e9924", + "language": "Jupyter", + "lines": 511, + "truncated": false, + "block": 9, + "row": 2618 + }, + { + "path": "README.md", + "sha256": "e377b6b9a86500892021f7245a04d895f084360b8deb3f153bcd18bcfe25e6d8", + "language": "Text", + "lines": 38, + "truncated": false, + "block": 9, + "row": 14582 + }, + { + "path": "analysis/TRUST/MIC_predictions.ipynb", + "sha256": "27dc14c5e847d50dce2bb9994d994a796f597fac4640b63cd2a1feecb9036369", + "language": "Jupyter", + "lines": 875, + "truncated": false, + "block": 9, + "row": 2708 + }, + { + "path": "analysis/TRUST/TCC.ipynb", + "sha256": "3c8b4bc0920693fac5b67f676efdd0087b89d5b4cab4b251e70ba42dab57833f", + "language": "Jupyter", + "lines": 1425, + "truncated": false, + "block": 9, + "row": 2734 + }, + { + "path": "analysis/TRUST/epi_utils.py", + "sha256": "f53fce3705b2a1afc6447ddfd3ecb19dde9feb66c33b63e8a21ee9573ca2623c", + "language": "Python", + "lines": 1636, + "truncated": false, + "block": 9, + "row": 12625 + }, + { + "path": "analysis/TRUST/scripts/combine_patient_WGS_data.py", + "sha256": "006ec98f5203d68bfdede7bcdb09921da02d819033757303dee38979b675ae52", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 9764 + }, + { + "path": "analysis/TRUST/scripts/imputation_culture.Rmd", + "sha256": "8412144eb5def2416ff3397f0b840d0c2c66d97ce89e576a872132bef47a90b3", + "language": "R", + "lines": 308, + "truncated": false, + "block": 9, + "row": 13632 + }, + { + "path": "analysis/TRUST/scripts/prep_table1.R", + "sha256": "b92f94de05823f66f313d750e1176aa4ecb9679321f85303322cedd05f8ea0b0", + "language": "R", + "lines": 103, + "truncated": false, + "block": 9, + "row": 13448 + }, + { + "path": "analysis/TRUST/scripts/process_TRUST_data_for_analysis.py", + "sha256": "ec9932d878b33c2401a04ccaddab4f9d2c7c785772beaaf97f4256e41c86988c", + "language": "Python", + "lines": 245, + "truncated": false, + "block": 9, + "row": 11196 + }, + { + "path": "analysis/TRUST/scripts/utils.py", + "sha256": "880351745a198104024f8f415a74e655af03c21bb952a2a437037e11425b2d98", + "language": "Python", + "lines": 954, + "truncated": false, + "block": 9, + "row": 12476 + }, + { + "path": "analysis/TRUST/time_to_event.ipynb", + "sha256": "2af20149e000e6c4eb6537ccf4e8fb4bc2c1c292a4bc20cc8fc104616d552b33", + "language": "Jupyter", + "lines": 1614, + "truncated": false, + "block": 9, + "row": 2741 + }, + { + "path": "analysis/TRUST/time_to_event_Firth.Rmd", + "sha256": "e51620a6044c24e70267aeb346e34e36d05279a3b68469d2a70876a05beda0d6", + "language": "R", + "lines": 244, + "truncated": false, + "block": 9, + "row": 13466 + }, + { + "path": "analysis/ethionamide_LoF.ipynb", + "sha256": "aa11de56c68d6ccc5023b4685a39caace55799832f2c21c6617c89bc7fd5b565", + "language": "Jupyter", + "lines": 232, + "truncated": false, + "block": 9, + "row": 2440 + }, + { + "path": "analysis/insilico_analysis.ipynb", + "sha256": "3315ffa184ba56034a6e21a01ed393de9def8d88dab785797614beff3ffec345", + "language": "Jupyter", + "lines": 2446, + "truncated": false, + "block": 9, + "row": 2743 + }, + { + "path": "analysis/isolates_span_CC.ipynb", + "sha256": "7bb49c9bb20b38f3decf45487dc2647017c8073844a90cecc4f5a2773babdc71", + "language": "Jupyter", + "lines": 303, + "truncated": false, + "block": 9, + "row": 2477 + }, + { + "path": "analysis/performance_metrics.ipynb", + "sha256": "a12d1aa7fb7833eb2a87653a107f782325ae9dbae05dcbe251fa8a45b1f78666", + "language": "Jupyter", + "lines": 1877, + "truncated": false, + "block": 9, + "row": 2739 + }, + { + "path": "analysis/predictions/addl_data_predictions.py", + "sha256": "41b0697290ea802fdbd8205294dded94a85d3fd035db47770b80b0d6bd8d4ca2", + "language": "Python", + "lines": 542, + "truncated": false, + "block": 9, + "row": 12018 + }, + { + "path": "analysis/predictions/addl_data_predictions_regression.py", + "sha256": "86babbd7c9907197e7c80bde71b53efbe709fd9876d7e6270e3d9400d996588c", + "language": "Python", + "lines": 464, + "truncated": false, + "block": 9, + "row": 11924 + }, + { + "path": "analysis/predictions/create_insilico_VCFs.py", + "sha256": "b28285d95ed122ce4f46c266196de9bf4be5e51d7523d0d728acfaaf51ba8d53", + "language": "Python", + "lines": 579, + "truncated": false, + "block": 9, + "row": 12146 + }, + { + "path": "analysis/predictions/different_AF_predictions.py", + "sha256": "95de3e2de09ba1583c8d42aeab372ef61b0f2cb4a0214682094166a97c82ae45", + "language": "Python", + "lines": 233, + "truncated": false, + "block": 9, + "row": 10711 + }, + { + "path": "analysis/saliency/plot_saliency.ipynb", + "sha256": "0d11722ed2ffa8f1948d2d12eea04bf79ba082006fc2d26b6a31e3764f6073e3", + "language": "Jupyter", + "lines": 976, + "truncated": false, + "block": 9, + "row": 2709 + }, + { + "path": "analysis/saliency/run_deepexplain.py", + "sha256": "0db8a326b0dae3af81a9e8524a8b8e279307a15c52a74bfa5b9f64e661d21086", + "language": "Python", + "lines": 395, + "truncated": false, + "block": 9, + "row": 11752 + }, + { + "path": "analysis/spatial_clustering/analysis.ipynb", + "sha256": "9d621e84896603ecb9f8978f252e8aadb144a83679868f2c473b33982dc765b8", + "language": "Jupyter", + "lines": 462, + "truncated": false, + "block": 9, + "row": 2604 + }, + { + "path": "analysis/spatial_clustering/run_GeO.py", + "sha256": "20e70736f9abf5e5c5e6c442546348f6caf345cf0a77c9ab8fe52a004e0b8e68", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 9400 + }, + { + "path": "data_processing/01_combine_MIC_data.py", + "sha256": "e1179df6b4fc8ee2fc90141e22958756c73b768fe87cd107b3c1f5be09c28efe", + "language": "Python", + "lines": 371, + "truncated": false, + "block": 9, + "row": 11694 + }, + { + "path": "data_processing/02_clean_pheno_data.py", + "sha256": "7320404e8b2b9ac55f1fcb03650b026bb0ed8d6b841adfff7c30523bc196de21", + "language": "Python", + "lines": 322, + "truncated": false, + "block": 9, + "row": 11599 + }, + { + "path": "data_processing/03_get_seq_alns.py", + "sha256": "9c04ce8b26a8431a53404c791554cc97cf89967456405739b4a18c6fd468633b", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 9, + "row": 10530 + }, + { + "path": "data_processing/04_make_lineage_matrix.py", + "sha256": "dd6d95dcd52179b8144774b955e44ccb1b6272f4ded095374200f569edb155e3", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 9, + "row": 9961 + }, + { + "path": "data_processing/clean_cryptic_data.py", + "sha256": "e14fce341914451f8427237d8636bc2ca0bf7c22eaea8691034a087be996a82a", + "language": "Python", + "lines": 185, + "truncated": false, + "block": 9, + "row": 10179 + }, + { + "path": "data_processing/data_curation.ipynb", + "sha256": "0f7cd504c3bf3bdb13416e0792fcc1e5fe8a395714e2b6ebd02177f1dc7a54b3", + "language": "Jupyter", + "lines": 782, + "truncated": false, + "block": 9, + "row": 2665 + }, + { + "path": "data_processing/make_MSA.py", + "sha256": "7fde2e949fd9ae087fe2c6103a6ca4e1b2b86e8b4c73c0e437a6a0c1497ec5d1", + "language": "Python", + "lines": 584, + "truncated": false, + "block": 9, + "row": 12173 + }, + { + "path": "data_processing/pDST_data_augmentation.ipynb", + "sha256": "7dfbe936ac810bd99f2db336c1867ba2142508899aa0ebf39c2f85caa133df3f", + "language": "Jupyter", + "lines": 855, + "truncated": false, + "block": 9, + "row": 2691 + }, + { + "path": "model/catalog_model.py", + "sha256": "b86e0693faa60e545e54631a464b150a0a6aa1dbb941c1de7e574e4891131bff", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 9108 + }, + { + "path": "model/cnn_custom_loss.py", + "sha256": "6314673427f7f74043af4b21f3d97e0cb9713a1dbf5b19654b4ba7378230f8ee", + "language": "Python", + "lines": 543, + "truncated": false, + "block": 9, + "row": 12077 + }, + { + "path": "model/cnn_permutation_test.py", + "sha256": "8023a9e2b091999274a01edee3abc6c73f00500fcd539e319468a673161504b7", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 9, + "row": 10318 + }, + { + "path": "model/regression_cv.py", + "sha256": "c86d10efcce62236465ebffced51e6fc4a3b8286cb30093593a81f54dbacac89", + "language": "Python", + "lines": 330, + "truncated": false, + "block": 9, + "row": 11327 + }, + { + "path": "model/xgboost_cv.py", + "sha256": "d95e1a921fd6179cb95c85570fecf6389c0320c4a631ff5df7332c6f648a36d7", + "language": "Python", + "lines": 595, + "truncated": false, + "block": 9, + "row": 12081 + }, + { + "path": "overview/overview_figures.ipynb", + "sha256": "03f073d2bdc5782b34189a79355ec60f9f538873e931374a4488ad1108fa1186", + "language": "Jupyter", + "lines": 753, + "truncated": false, + "block": 9, + "row": 2678 + }, + { + "path": "test_example/cnn_predict.py", + "sha256": "512d72d0a0bb3307914e33644ad8837dded803c81939ac8a62c690b2bfaa978b", + "language": "Python", + "lines": 242, + "truncated": false, + "block": 9, + "row": 10874 + }, + { + "path": "utils/data_utils.py", + "sha256": "d86f20ccb423927f6dd9c571f8ad1ae8fa5f03f2bc1c70a1b81d62a04b3cc73a", + "language": "Python", + "lines": 1275, + "truncated": false, + "block": 9, + "row": 12534 + }, + { + "path": "utils/dataloader.py", + "sha256": "89d18a44564b8a904730223bf4ca109ccd935ae05ff3462024c121f58fb3167f", + "language": "Python", + "lines": 303, + "truncated": false, + "block": 9, + "row": 11337 + }, + { + "path": "utils/inSilicoMut_utils.py", + "sha256": "7c8e507b441853f8147bc8d214208b8b43976e4735cf5dd09af02604950f8f58", + "language": "Python", + "lines": 957, + "truncated": false, + "block": 9, + "row": 12449 + }, + { + "path": "utils/model_utils.py", + "sha256": "8530961716644f7c1de9110823d6072c2987f88fced345cef34876f96379cfaa", + "language": "Python", + "lines": 866, + "truncated": false, + "block": 9, + "row": 12372 + }, + { + "path": "utils/plotting_utils.py", + "sha256": "81ae9c2bfac214437e363ec6a7749897fa5b59f10043efdba906afa0d66334dd", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 9, + "row": 9904 + }, + { + "path": "utils/saliency_utils.py", + "sha256": "34cdb8d0e9b803cdc3054391db035d2ea26fd404ae198922b536905ff3438584", + "language": "Python", + "lines": 445, + "truncated": false, + "block": 9, + "row": 11950 + } + ] +} \ No newline at end of file diff --git a/manifests/08/github.com__dellytools__delly.json b/manifests/08/github.com__dellytools__delly.json new file mode 100644 index 0000000000000000000000000000000000000000..a4754a490054ab994a6b4c7013d437f80165b017 --- /dev/null +++ b/manifests/08/github.com__dellytools__delly.json @@ -0,0 +1,399 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/dellytools/delly", + "url": "https://github.com/dellytools/delly", + "host": "github.com", + "commit": "c6474a25a125982a85829749ab7c14c63eaf17a2", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "5c2e1c1a30e65e75e26b6c2145fc0fe10ac96855b9dada16e854e45bfbd6f4ee", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2888 + }, + { + "path": "R/cnv.R", + "sha256": "998dc7cb3825d1891a130caae7d76e08c159e13901e86760ebb1180c29086ed9", + "language": "R", + "lines": 33, + "truncated": false, + "block": 9, + "row": 12838 + }, + { + "path": "R/gcbias.R", + "sha256": "614715c9e4067af7fc2dedde19ab4ca449087e6310caffa610bb04bf71c97d31", + "language": "R", + "lines": 19, + "truncated": false, + "block": 9, + "row": 12804 + }, + { + "path": "R/rd.R", + "sha256": "b6102f04ebff2536825710d090efb9d380963aa7724072998653cc8f13348d6a", + "language": "R", + "lines": 84, + "truncated": false, + "block": 9, + "row": 13177 + }, + { + "path": "README.md", + "sha256": "4b8252f82c391b3a277415c8c5dd8fca62f234691b4aeb19d373de220fb5dbdc", + "language": "Text", + "lines": 266, + "truncated": false, + "block": 9, + "row": 14721 + }, + { + "path": "scripts/delly2bnd.py", + "sha256": "a724cc689d09b8f94ca205ec2cf3cf44758dba2bd0d45ebb602b8caa5da13a55", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 9, + "row": 9887 + }, + { + "path": "src/align.h", + "sha256": "b0dcc2759f6b13eaa6de087b699a6c70beb0a430f285943fdcb273497c04d57b", + "language": "C/C++", + "lines": 249, + "truncated": false, + "block": 9, + "row": 1672 + }, + { + "path": "src/asmode.h", + "sha256": "83e5075ac460f977d4d3a6eb4f74fbb6ecf619002666fd3a6c8d5f2100ffd8c3", + "language": "C/C++", + "lines": 897, + "truncated": false, + "block": 9, + "row": 1827 + }, + { + "path": "src/assemble.h", + "sha256": "2593bee36626fe5e2b3d315412dd5f2458aba01fa5d818619ae2f662fb3659b3", + "language": "C/C++", + "lines": 969, + "truncated": false, + "block": 9, + "row": 1834 + }, + { + "path": "src/bed.h", + "sha256": "48513b7e1eb044b654db1fa9e5d88b04461c8db7e87adcc550463947622291e1", + "language": "C/C++", + "lines": 71, + "truncated": false, + "block": 9, + "row": 1330 + }, + { + "path": "src/bolog.h", + "sha256": "8e9693ac46c5b85f555c4a0b82e9e844be161a4b6acb75a5f0d9ed5f09d9513b", + "language": "C/C++", + "lines": 156, + "truncated": false, + "block": 9, + "row": 1605 + }, + { + "path": "src/cluster.h", + "sha256": "ca279f775909de21449c8e5d477388ad23b654a8e7559e8a255abf867e8ff891", + "language": "C/C++", + "lines": 646, + "truncated": false, + "block": 9, + "row": 1804 + }, + { + "path": "src/cnv.h", + "sha256": "733245ac3cc02e4bca705e289cce08cd502a1253d1faa020f3dca2bd90e7678f", + "language": "C/C++", + "lines": 899, + "truncated": false, + "block": 9, + "row": 1825 + }, + { + "path": "src/coral.h", + "sha256": "c564e12583928af241b517100fe5fd3aa06569e4e468e62c52c44ef1593e3598", + "language": "C/C++", + "lines": 933, + "truncated": false, + "block": 9, + "row": 1833 + }, + { + "path": "src/coverage.h", + "sha256": "5c33b1374d0f708f8345d5cf7395c74c3abbf75cc653010f8111fa0ea547dce3", + "language": "C/C++", + "lines": 785, + "truncated": false, + "block": 9, + "row": 1821 + }, + { + "path": "src/delly.cpp", + "sha256": "4a9c1e1e8b09d6832284edd2fad9c6ede1cd25ff2a1e002ab2e5444d1c981593", + "language": "C++", + "lines": 87, + "truncated": false, + "block": 9, + "row": 373 + }, + { + "path": "src/delly.h", + "sha256": "e46e886af1fe8d649a897761e20bde8cbec9c8c87b4465a17f7a9a2d38f15f13", + "language": "C/C++", + "lines": 430, + "truncated": false, + "block": 9, + "row": 1772 + }, + { + "path": "src/edlib.cpp", + "sha256": "58308d9376ba74d8dd3100e8a7f661717def3621b036667a043e83e35eb7405d", + "language": "C++", + "lines": 1480, + "truncated": false, + "block": 9, + "row": 1074 + }, + { + "path": "src/edlib.h", + "sha256": "faf76e864ff653b91b91f56a09746fa70a4c7bd2180cd17c138cc98116a64944", + "language": "C/C++", + "lines": 277, + "truncated": false, + "block": 9, + "row": 1714 + }, + { + "path": "src/filter.h", + "sha256": "108dacdde2dc65478ad14b0a6a4eaf313c5287527603e24d24cda2f2d396df48", + "language": "C/C++", + "lines": 1407, + "truncated": false, + "block": 9, + "row": 1855 + }, + { + "path": "src/gaf.h", + "sha256": "46ceed70f61be908bed89690cab370d650cdc4858cf5f4153e7325f5e021c601", + "language": "C/C++", + "lines": 172, + "truncated": false, + "block": 9, + "row": 1615 + }, + { + "path": "src/gcbias.h", + "sha256": "da0e21fc86a04f430bfbc0cf0ca60b98eb8eac72b6e0421a12e334948c1ad4a3", + "language": "C/C++", + "lines": 445, + "truncated": false, + "block": 9, + "row": 1780 + }, + { + "path": "src/genotype.h", + "sha256": "89fe05d17338a886d323a9c0a4a04e1003c65e004f71519f1eb97162206f7209", + "language": "C/C++", + "lines": 401, + "truncated": false, + "block": 9, + "row": 1778 + }, + { + "path": "src/gfa.h", + "sha256": "e5e8a13a0789850c8bd63714d38718baf9ecb31ba9875e010a186ae92169464b", + "language": "C/C++", + "lines": 214, + "truncated": false, + "block": 9, + "row": 1612 + }, + { + "path": "src/gotoh.h", + "sha256": "1db3b7e20d724ebe454fbf18e427baf665400a5456c16691f4fa9330d24ff4a5", + "language": "C/C++", + "lines": 194, + "truncated": false, + "block": 9, + "row": 1603 + }, + { + "path": "src/junction.h", + "sha256": "8ce22eab144bfc16ea1af5ac51d67436522c00d356d00d38905b1e4a1db0b29e", + "language": "C/C++", + "lines": 752, + "truncated": false, + "block": 9, + "row": 1826 + }, + { + "path": "src/merge.h", + "sha256": "94c26450c0d15befdbeec16c8ae74e15e0ee8982f70b558b67bf5479feff089c", + "language": "C/C++", + "lines": 2166, + "truncated": false, + "block": 9, + "row": 1865 + }, + { + "path": "src/methyl.h", + "sha256": "31f82271227da57772cafd5df794ad3d2fc57140bd4bf0f548bbfce3f7c879d5", + "language": "C/C++", + "lines": 572, + "truncated": false, + "block": 9, + "row": 1800 + }, + { + "path": "src/modvcf.h", + "sha256": "e030cffa2f2a5490e2d084178c6d07e42ebe02a9fbf88642ee580309e9f34888", + "language": "C/C++", + "lines": 816, + "truncated": false, + "block": 9, + "row": 1832 + }, + { + "path": "src/msa.h", + "sha256": "74193a2ee589a00b3bd3e843bbfb89c384727f745923de01d3b7441a073423b8", + "language": "C/C++", + "lines": 250, + "truncated": false, + "block": 9, + "row": 1669 + }, + { + "path": "src/needle.h", + "sha256": "798c76da161f7e206a39b735f47a84cf49697bb7034bc9786cf7dddde3d249da", + "language": "C/C++", + "lines": 409, + "truncated": false, + "block": 9, + "row": 1742 + }, + { + "path": "src/pangenome.h", + "sha256": "e0e67b04b4b4dcf5e3fcf392c04241dd216bdaf602c1df6c1569c7b65d7fa894", + "language": "C/C++", + "lines": 289, + "truncated": false, + "block": 9, + "row": 1725 + }, + { + "path": "src/ploidy.h", + "sha256": "91838e1372401dcf65e3f39266b2c5a77523065ae50bf82ad5c2dc7d4b167c54", + "language": "C/C++", + "lines": 368, + "truncated": false, + "block": 9, + "row": 1733 + }, + { + "path": "src/popgen.h", + "sha256": "7d463f2ab82c5115ce652492dedcb68cd6fd4a1c738f217f87fc7c32da04dd61", + "language": "C/C++", + "lines": 305, + "truncated": false, + "block": 9, + "row": 1704 + }, + { + "path": "src/scan.h", + "sha256": "fc1b07e68d44c89b9762ab28322bc70b2c84ac42da2c3464ab177ae8e7ccfb32", + "language": "C/C++", + "lines": 285, + "truncated": false, + "block": 9, + "row": 1708 + }, + { + "path": "src/shortpe.h", + "sha256": "1a125f18d29b00d14c75e6c6fe3fc6ba574d4b31619daca5d076f3ad77690be8", + "language": "C/C++", + "lines": 626, + "truncated": false, + "block": 9, + "row": 1807 + }, + { + "path": "src/split.h", + "sha256": "a7d713a23e2329cc7fd2f030a62cb9eacc59c69a954187ffff458c0fc31cd12d", + "language": "C/C++", + "lines": 677, + "truncated": false, + "block": 9, + "row": 1808 + }, + { + "path": "src/svanno.h", + "sha256": "d87ea4e978d19acab9847c8149e0383bd317745d54759401b09af55fe0d22dc8", + "language": "C/C++", + "lines": 241, + "truncated": false, + "block": 9, + "row": 1850 + }, + { + "path": "src/tags.h", + "sha256": "9e22669ef7cf24afabdd5e029c0ccb3c065efc16c889ab866966fec72d07dadb", + "language": "C/C++", + "lines": 375, + "truncated": false, + "block": 9, + "row": 1755 + }, + { + "path": "src/tegua.h", + "sha256": "1d96d5ea9499a2be2745ae82a5698da92e711296d4d2f9420c2a34a7b63d95eb", + "language": "C/C++", + "lines": 450, + "truncated": false, + "block": 9, + "row": 1783 + }, + { + "path": "src/threadpool.h", + "sha256": "80bf0a2b5b4ffeef458ff52aded9ef22725f19c109e54a810fa68b630f479823", + "language": "C/C++", + "lines": 81, + "truncated": false, + "block": 9, + "row": 1306 + }, + { + "path": "src/util.h", + "sha256": "db12a9df6e3e39a0ff66941f2a7cf117bddc3e4632c00dca68f032e13fff21fb", + "language": "C/C++", + "lines": 941, + "truncated": false, + "block": 9, + "row": 1824 + }, + { + "path": "src/version.h", + "sha256": "21eb77ac00df7903ce3f88749719d2daf849f982a444a5f8368b2cf89d5c21c4", + "language": "C/C++", + "lines": 60, + "truncated": false, + "block": 9, + "row": 1483 + } + ] +} \ No newline at end of file diff --git a/manifests/08/github.com__dhkim15__s1-laminar-attention-sebold.json b/manifests/08/github.com__dhkim15__s1-laminar-attention-sebold.json new file mode 100644 index 0000000000000000000000000000000000000000..8f8c5c9719cc15ff57dcd178299588a983a7c397 --- /dev/null +++ b/manifests/08/github.com__dhkim15__s1-laminar-attention-sebold.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/dhkim15/s1-laminar-attention-sebold", + "url": "https://github.com/dhkim15/S1-laminar-attention-SEBOLD", + "host": "github.com", + "commit": "9586b39c5c0c88ab964daeeb1adfc4f96d47acc2", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d8f1fef03d95d025beea4b4d4345aca9bccf359510616941c05b3125d4e10336", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2780 + }, + { + "path": "README.md", + "sha256": "d7505ef1894bdcd45df303f8246ae4cd0b69e782647c657a355c55a09e89b571", + "language": "Text", + "lines": 24, + "truncated": false, + "block": 9, + "row": 14474 + }, + { + "path": "scripts/extract_qT1_laminar_profile.m", + "sha256": "e57563e6a80e776206cbb5675226048f6628e0f1ef29b9d0e2bdd43c8232c094", + "language": "MATLAB", + "lines": 203, + "truncated": false, + "block": 9, + "row": 5147 + }, + { + "path": "scripts/laminar_qT1_profile.m", + "sha256": "9eb4f8922fc35262f858b0e450ae7a960f3623f861b364b14817795fc7bf6a91", + "language": "MATLAB", + "lines": 316, + "truncated": false, + "block": 9, + "row": 5512 + }, + { + "path": "scripts/traveling_wave_phase_mapping.m", + "sha256": "e9aa2ba149295cd7e7b6486ef3667bc7f943fe87c83fac47481ebc3d54bef982", + "language": "MATLAB", + "lines": 217, + "truncated": false, + "block": 9, + "row": 5293 + } + ] +} \ No newline at end of file diff --git a/manifests/08/zenodo__10838365.json b/manifests/08/zenodo__10838365.json new file mode 100644 index 0000000000000000000000000000000000000000..8a1eaf3ead0a2849d177f40d2c8f734d2727eeeb --- /dev/null +++ b/manifests/08/zenodo__10838365.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:10838365", + "url": "10.5281/zenodo.10838365", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "c5070401ef92120e228f928c0b6bea6fb2e186276dec373bb7ce3a3735ee74e6", + "language": "Text", + "lines": 104, + "truncated": false, + "block": 9, + "row": 14617 + }, + { + "path": "align.R", + "sha256": "f0bfb765c4779c879f37f20fcc38254ef6d67bfa010013d759b088195ef3a640", + "language": "R", + "lines": 228, + "truncated": false, + "block": 9, + "row": 13633 + }, + { + "path": "checksum.R", + "sha256": "62d97533ce32727a8dbfc5986ee692ba1b2a50f5ffc621e0fcb49b3e2a1cda8c", + "language": "R", + "lines": 115, + "truncated": false, + "block": 9, + "row": 13276 + }, + { + "path": "coverage.R", + "sha256": "ae4afc903a155fd6c600aed2bac8a5251029f51c4e23a0b6a3df17d986e3828f", + "language": "R", + "lines": 283, + "truncated": false, + "block": 9, + "row": 13744 + }, + { + "path": "utils.R", + "sha256": "7f7869110b1cba8a28d532256bd35e022c64f562d7a7cb1edc4b84049f818d6e", + "language": "R", + "lines": 98, + "truncated": false, + "block": 9, + "row": 13260 + } + ] +} \ No newline at end of file diff --git a/manifests/09/zenodo__15802164.json b/manifests/09/zenodo__15802164.json new file mode 100644 index 0000000000000000000000000000000000000000..8bbb2b01de0262f86a4603563f50198d11b67811 --- /dev/null +++ b/manifests/09/zenodo__15802164.json @@ -0,0 +1,21 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:15802164", + "url": "https://doi.org/10.5281/zenodo.15802164", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "adaptive_vascular_analysis.py", + "sha256": "576e153cc7c84264ae907e83f0d90a816f240e983b9c80c2097b66b27fac4d38", + "language": "Python", + "lines": 785, + "truncated": false, + "block": 9, + "row": 12438 + } + ] +} \ No newline at end of file diff --git a/manifests/0b/github.com__braindynamicsusyd__braintrak.json b/manifests/0b/github.com__braindynamicsusyd__braintrak.json new file mode 100644 index 0000000000000000000000000000000000000000..340b3d5852d6f5e656c975e6c198127a07e72608 --- /dev/null +++ b/manifests/0b/github.com__braindynamicsusyd__braintrak.json @@ -0,0 +1,840 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/braindynamicsusyd/braintrak", + "url": "https://github.com/BrainDynamicsUSYD/braintrak", + "host": "github.com", + "commit": "1681a892c8635e31bdf6463e81d0460768068bf2", + "license": "BSD-2-Clause", + "license_confirmed_by": "license file license.txt", + "redistribution": "yes", + "files": [ + { + "path": "+bt/+core/chain.m", + "sha256": "5b845ef944aa54a664428130966d7d67ca668357f3d6679d05d00f6e424d67e7", + "language": "MATLAB", + "lines": 186, + "truncated": false, + "block": 9, + "row": 5167 + }, + { + "path": "+bt/+core/chain_diagnostics.m", + "sha256": "cf9db629b14643a3e0cf80370e9a58394b5e40f9a8676da7f4bf6cc6f4953711", + "language": "MATLAB", + "lines": 106, + "truncated": false, + "block": 9, + "row": 4604 + }, + { + "path": "+bt/+core/chain_diagnostics_parallel.m", + "sha256": "647ffeb6c61727633e9cc2d16fe1d232a7a63b714934f0596510303c432d574c", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3314 + }, + { + "path": "+bt/+core/chain_parallel.m", + "sha256": "75dca849b4331ff37501104d42cba33791a552f6074033461663d24387fd13b9", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 9, + "row": 4179 + }, + { + "path": "+bt/+core/fit_spectrum.m", + "sha256": "d345c229b125a18294ca516e5a64d175d5f2cbf44cd8ee7d4d5b7225cc407fc2", + "language": "MATLAB", + "lines": 121, + "truncated": false, + "block": 9, + "row": 4920 + }, + { + "path": "+bt/+core/load_subject.m", + "sha256": "651105e358e84ffa23cb03393372aa4325546da458bbfdd66509a829f081653e", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4172 + }, + { + "path": "+bt/+data/electrode_positions.m", + "sha256": "43656346fafda9244e2337c34f461a7e58df18d49b7223a3af1b8ff07b9d018a", + "language": "MATLAB", + "lines": 167, + "truncated": false, + "block": 9, + "row": 4925 + }, + { + "path": "+bt/+data/get_tfs.m", + "sha256": "dd5b62ac74c5a71f650ae53dfb6b57f7c7d42c031f4227ed75358b27ebf8c178", + "language": "MATLAB", + "lines": 125, + "truncated": false, + "block": 9, + "row": 4928 + }, + { + "path": "+bt/+data/import_raw_eeg.m", + "sha256": "8ef7da8a640d6a14fed345980ca05c4e6cdec1ba397c866b7f0fb4f010d49c10", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 9, + "row": 4227 + }, + { + "path": "+bt/+model/dummy.m", + "sha256": "e995776cde89e6cb396460da3ac148bd7ec0be59971210eda6d7c3b0ef6a6513", + "language": "MATLAB", + "lines": 129, + "truncated": false, + "block": 9, + "row": 4494 + }, + { + "path": "+bt/+model/full.m", + "sha256": "4b0191bc8be71aef5be8a9daf255a9eebeba9689d444a3ce227031794f5176fb", + "language": "MATLAB", + "lines": 193, + "truncated": false, + "block": 9, + "row": 5306 + }, + { + "path": "+bt/+model/full_b_ratio.m", + "sha256": "5f659afee0837ff383cee088a700633d38569b578ddeb31dad2c1a1a616f1369", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 9, + "row": 4463 + }, + { + "path": "+bt/+model/full_emgf.m", + "sha256": "3cbf3892b948d04b1016d214abb60f66f2ce207e70ae4743ff11c56365953b8a", + "language": "MATLAB", + "lines": 103, + "truncated": false, + "block": 9, + "row": 4850 + }, + { + "path": "+bt/+model/full_gdiff.m", + "sha256": "f10c871299ec60a82328140ccd05a7c3f06f7f407dc0aa1c8dbafdf10e73fed8", + "language": "MATLAB", + "lines": 195, + "truncated": false, + "block": 9, + "row": 5320 + }, + { + "path": "+bt/+model/full_gee_extended.m", + "sha256": "3c4940158f6a6090301957b99da70f1f8645c72b06412611b87d6489f44195d7", + "language": "MATLAB", + "lines": 193, + "truncated": false, + "block": 9, + "row": 5310 + }, + { + "path": "+bt/+model/full_norm.m", + "sha256": "70b76d1cbe174511f860b567a67835f744153dc758a108ce7509f27625041497", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 9, + "row": 4250 + }, + { + "path": "+bt/+model/gab_mass.m", + "sha256": "8fffafb513e5f15db8916dd95a2a2c0d6a8b0024448c673815e32f716ac03ee3", + "language": "MATLAB", + "lines": 173, + "truncated": false, + "block": 9, + "row": 5215 + }, + { + "path": "+bt/+model/nus_mass.m", + "sha256": "5dc17e366760febb85551babc1917f611ffa38a32812b0a898c57f2a5f6f7844", + "language": "MATLAB", + "lines": 196, + "truncated": false, + "block": 9, + "row": 5157 + }, + { + "path": "+bt/+model/reduced.m", + "sha256": "c636a7688654245a1d1b7f95711a62d3634f6ff6e03e81dab3073044713296d0", + "language": "MATLAB", + "lines": 194, + "truncated": false, + "block": 9, + "row": 5274 + }, + { + "path": "+bt/+model/reduced_alpha_emphasized.m", + "sha256": "37eb95786a71ae73aa9e281e28e8212b7c6b4e2e87a2a751376993948f7035ba", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3269 + }, + { + "path": "+bt/+model/reduced_b_ratio.m", + "sha256": "2240019bdbdf1551ae0c365047c7b3fc2c62d1672186f59e0092552e4e157f31", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4258 + }, + { + "path": "+bt/+model/reduced_chisqweight.m", + "sha256": "9bb239a9f314f1b8a7d6d54d9058a60a49857d911b9fdad618f5ec0b2b982427", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3464 + }, + { + "path": "+bt/+model/reduced_emgf.m", + "sha256": "c0e36b81c63f07ee0668ede68efa620b67dbf2cf4c485b566ba4656f7d20e779", + "language": "MATLAB", + "lines": 99, + "truncated": false, + "block": 9, + "row": 4753 + }, + { + "path": "+bt/+model/reduced_l.m", + "sha256": "d4953f599e497742b8c3c8e72d979945ad20833d8919364550177a077a6ab44f", + "language": "MATLAB", + "lines": 191, + "truncated": false, + "block": 9, + "row": 5291 + }, + { + "path": "+bt/+model/reduced_ln.m", + "sha256": "534e99e3337412546b0f4b448e0bc3f517ea0ce2247a4d1af661e1a3548238b4", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 9, + "row": 4349 + }, + { + "path": "+bt/+model/reduced_ln_b_ratio.m", + "sha256": "cb5323d317d4735ddb28d3d8531dd2ead44ce333e42991f38e2ec50f2755457f", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4266 + }, + { + "path": "+bt/+model/reduced_ly.m", + "sha256": "c73733f18eba597fda1cf615c57a28ebfdd6174ce1a8e74d54dbe1ee38ab133f", + "language": "MATLAB", + "lines": 184, + "truncated": false, + "block": 9, + "row": 5237 + }, + { + "path": "+bt/+model/reduced_ly_no_n.m", + "sha256": "1aa95c1d815777930ee85d0af09fcaf940db9cfe11a3cec06c452728a95b6dec", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 9, + "row": 4364 + }, + { + "path": "+bt/+model/spatial_emg.m", + "sha256": "6913ffd99c3f1299d05cfb5affdc61ca50279e038a0d71ae724d6e56f4e36a8e", + "language": "MATLAB", + "lines": 119, + "truncated": false, + "block": 9, + "row": 4951 + }, + { + "path": "+bt/+model/spatial_emg_xyz.m", + "sha256": "9288f6911b248f9cb24fd8cff6d53b1e381a3c86e511a7006edf5343a7385d65", + "language": "MATLAB", + "lines": 90, + "truncated": false, + "block": 9, + "row": 4502 + }, + { + "path": "+bt/+model/spatial_express_gains.m", + "sha256": "49504a301c5361acf28dc9968a879da19c24ac6c1bfb1f199f6482944b21b9d2", + "language": "MATLAB", + "lines": 76, + "truncated": false, + "block": 9, + "row": 4574 + }, + { + "path": "+bt/+model/spatial_express_superphase.m", + "sha256": "7c2982f81ae69004a8d46a9acc68bbd841a0a02caeb06890974654ff63cfcedf", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 9, + "row": 4712 + }, + { + "path": "+bt/+model/spatial_express_t0.m", + "sha256": "1a9b6daae14816c015d148b8ad7a30d83ddbd5c2d94242c30a27b27401cbf04b", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 9, + "row": 4556 + }, + { + "path": "+bt/+model/spatial_express_t0_noemg.m", + "sha256": "b01e146d469cae4e04e5eb49cc814efa10eed7c59726522f2bff8b6382bc0038", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 9, + "row": 4580 + }, + { + "path": "+bt/+model/spatial_express_t0_noemg_alphaweighted.m", + "sha256": "def0fd9a866ef4d656510d1205028678408b49453de3439a06e41d0b8ffb95ed", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 3998 + }, + { + "path": "+bt/+model/spatial_express_t0_phased.m", + "sha256": "c4a0e0049cd4ad9fbebb797c6c126339c6b0e33f84ee554002e53952f2c2a5fc", + "language": "MATLAB", + "lines": 110, + "truncated": false, + "block": 9, + "row": 4900 + }, + { + "path": "+bt/+model/spatial_express_xyz_all.m", + "sha256": "2649196dc5114dcbfbd6d29995b44215e3bcf3074077099ce1c1cfa97dfd0e54", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 9, + "row": 4681 + }, + { + "path": "+bt/+model/spatial_express_xyz_t0.m", + "sha256": "56d666d3464356debd48c5d0004bdbf982c8a379458eb3e6c70c218b5b8244da", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 9, + "row": 4317 + }, + { + "path": "+bt/+model/spatial_express_xyz_x.m", + "sha256": "7c71ef7fe9c6880096cd279a6c4caffcc626b14610b5628e7b548f466e6d4dd4", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 9, + "row": 4306 + }, + { + "path": "+bt/+model/template.m", + "sha256": "0384d7d8930ee0c26db2cdfb54ebd9532082deaa97b7eb858ec77a154e9e5644", + "language": "MATLAB", + "lines": 180, + "truncated": false, + "block": 9, + "row": 5249 + }, + { + "path": "+bt/+model/template_spatial.m", + "sha256": "41fd24d312ed5a6b50a3bab2d0b5d350b997f484fe324d497769a77b1fd68fcd", + "language": "MATLAB", + "lines": 123, + "truncated": false, + "block": 9, + "row": 4887 + }, + { + "path": "+bt/@feather/blobs.m", + "sha256": "82a4a3a460fc179609c09475ef42d66744915fba17b96cee077ca0a7addee6ca", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3128 + }, + { + "path": "+bt/@feather/chisq.m", + "sha256": "721638fdb12ec7969bddd55b406718b708a183adcfc3602ab6b7a9e17eaafd7f", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 2962 + }, + { + "path": "+bt/@feather/clouds.m", + "sha256": "c153c1f4ff5bcad3761dd1139c39e087d044bf0552476c5f1b589942b5b542a0", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3239 + }, + { + "path": "+bt/@feather/cones.m", + "sha256": "6b2a66459acf8f25819f73b898610fc8e510bb2da8fe7649d607c60b1ced21a3", + "language": "MATLAB", + "lines": 103, + "truncated": false, + "block": 9, + "row": 4598 + }, + { + "path": "+bt/@feather/feather.m", + "sha256": "bacc533db19b076fad9f72fc4d6212e79958fc3701a0d70498d4639fecc60726", + "language": "MATLAB", + "lines": 187, + "truncated": false, + "block": 9, + "row": 5017 + }, + { + "path": "+bt/@feather/fitted_params.m", + "sha256": "a37efe258486bf0a6a6771419444abc2778731399116f74ccf703c9f2150dc51", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2956 + }, + { + "path": "+bt/@feather/fitted_params_from_posterior.m", + "sha256": "be4cb22808c3ed104b90a40a97a1934d66418c39ee55dc520c59258e75c8ecd1", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3742 + }, + { + "path": "+bt/@feather/head_plot.m", + "sha256": "961567331176908cd9f4d2c1d5ac19742f4d7d441d3bfcfe7d5e0b70fc46f0eb", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3385 + }, + { + "path": "+bt/@feather/import.m", + "sha256": "1b575243fe99be56d824c639791cdeeb32504dc0e38d73d9e111e4039562a3a1", + "language": "MATLAB", + "lines": 77, + "truncated": false, + "block": 9, + "row": 4224 + }, + { + "path": "+bt/@feather/interactive_fit.m", + "sha256": "c020a0272cdcb59083aac760e1a53740f7ab6f4377941a4648409e0b5691e219", + "language": "MATLAB", + "lines": 144, + "truncated": false, + "block": 9, + "row": 5062 + }, + { + "path": "+bt/@feather/loadobj.m", + "sha256": "24a46873f89cf1611fb30389df910ee750ade28277060bbdeb4160849ec8b832", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3243 + }, + { + "path": "+bt/@feather/plot_statecolored.m", + "sha256": "4c61a4ce6add045667586ecdd09cfd0ce1f368ffa299aa86d28fb2019eed36d4", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3603 + }, + { + "path": "+bt/@feather/plot_track.m", + "sha256": "54aa4668d4aecbb16fdf97b2e7bbde05a50680d05bdfb7f8fc309730b4228589", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3523 + }, + { + "path": "+bt/@feather/point_cloud.m", + "sha256": "e0cd8463eed62e2f78a807c7283f5c347c07ba2e837a9b01efb6dad5c8effbc2", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 2984 + }, + { + "path": "+bt/@feather/scatter_statecolored.m", + "sha256": "6759db9296b1f90b517bfab0a354a6c90b15e53b3c49359c8a1a75748e847996", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3467 + }, + { + "path": "+bt/@feather/spectrum.m", + "sha256": "cd50b67357284b2abb2ee41f279d6b058b9e55166cde9b8a5396c30ac05eee84", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3309 + }, + { + "path": "+bt/@feather/state_blocks.m", + "sha256": "d707047d8a56c71269219f7e8b44a79b579450904ce40ed6f275295e4e9a422e", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3248 + }, + { + "path": "+bt/@feather/state_colors.m", + "sha256": "4970942621972bd929a26a89b6abde78ff8fb0f349283d7849e0dfc87e737884", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3792 + }, + { + "path": "+bt/@feather/state_str.m", + "sha256": "db16d9918e9cadc42d0d0a7980a4c9b67c181e50150a72075800014d67837883", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2929 + }, + { + "path": "+bt/@feather/subrange.m", + "sha256": "076e41714d4e783700b8e0196da821a020078f2cfd69aaee3ed6c58fc8354f3b", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 9, + "row": 3443 + }, + { + "path": "+bt/@feather/timecourse.m", + "sha256": "b278e816ecd8d85b2c6075e2cc2749636a992999433458c30bd8dcae015ad017", + "language": "MATLAB", + "lines": 75, + "truncated": false, + "block": 9, + "row": 3992 + }, + { + "path": "+bt/@feather/xyz.m", + "sha256": "67f5cca22e9b19e18f182d945823054235083162fc37439b62ade5bb6e907053", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2934 + }, + { + "path": "+bt/@viewer/viewer.m", + "sha256": "03021d4bf31d5b7df2eccea8c68759b44c17430ae84b32f502deec20aa374e2e", + "language": "MATLAB", + "lines": 580, + "truncated": false, + "block": 9, + "row": 5744 + }, + { + "path": "+bt/fit.m", + "sha256": "59c7bce35c79f42c78ed93b4892d091454caacac4b1193e6b8d2f97c453d88f6", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 9, + "row": 3006 + }, + { + "path": "+bt/fit_track.m", + "sha256": "6bdd63d7ff8834842b12b029f6d3c967e30d025d3b83452b9e99d41897a44480", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 9, + "row": 4148 + }, + { + "path": "+bt_utils/alphavol_wrapper.m", + "sha256": "f9e1301f7c8beeacfd0917dc03e7cb04d16d3cd2c8f12733316f460f3620a13f", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3171 + }, + { + "path": "+bt_utils/chisq_outliers.m", + "sha256": "2906e494915b14034cb1736ad92894df771fdc02e3b0e8186d0868448b1501c3", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 9, + "row": 3009 + }, + { + "path": "+bt_utils/head_imager.m", + "sha256": "f9e7539baa9f3757a0b816d8024a45b28c18610ea903227501ee8a92223a3ffa", + "language": "MATLAB", + "lines": 252, + "truncated": false, + "block": 9, + "row": 5203 + }, + { + "path": "+bt_utils/kde.m", + "sha256": "4e9ce5e4df516f85518871e2b3d716314efe81f06b8ceff83d926ca3b655fc04", + "language": "MATLAB", + "lines": 133, + "truncated": false, + "block": 9, + "row": 5077 + }, + { + "path": "+bt_utils/state_cdata.m", + "sha256": "27f8379110d24be1114eea83300f05015d2d4b7a70489e08d91b8a2d4d3766a5", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3411 + }, + { + "path": "+db_fit/animate_fit.m", + "sha256": "a51e58bfe2d39ee1f713a216d242f63515a31e58f5b8608f3ed814285bc9fcab", + "language": "MATLAB", + "lines": 94, + "truncated": false, + "block": 9, + "row": 4583 + }, + { + "path": "+db_fit/animate_fit_old.m", + "sha256": "8da12a2d3d9b08236c655433cdde5db84b472524a44c770abad3666e5a51f774", + "language": "MATLAB", + "lines": 112, + "truncated": false, + "block": 9, + "row": 4804 + }, + { + "path": "+db_fit/assemble_master_pp.m", + "sha256": "b7cfca0688663b5415cdda8dc9f937357184e82e34e06d3fff108d75b2d0e736", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 9, + "row": 4008 + }, + { + "path": "+db_fit/convert_derived_pp.m", + "sha256": "c67356350ff8f055f6584d3fe40a77647fbde6c3b2839afaeedcfc7b1455e737", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 9, + "row": 3392 + }, + { + "path": "+db_fit/db_derived_fit.m", + "sha256": "a400b52288d0d3e8260068348ffda986d51a865fbc6ede38d0cc1076e8644f6d", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 4175 + }, + { + "path": "+db_fit/db_fit.m", + "sha256": "69e3e122011484f82e9d32834043f8bed67d0b7e71865ba68dd30b359dad0daf", + "language": "MATLAB", + "lines": 90, + "truncated": false, + "block": 9, + "row": 4647 + }, + { + "path": "+db_fit/db_fit_make_all_states_pp.m", + "sha256": "c02b9d5fc0c9ad03c1c4ab2b3c9c7c48edf4d0f943f066a6ece72e21347fbaad", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4289 + }, + { + "path": "+db_fit/db_fit_make_pp.m", + "sha256": "0ba9c2bc8366bb4d79dda3dc80dc9008ad5d93b6f8f5bbb8fd4da816347fcb6a", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 4036 + }, + { + "path": "+db_fit/nd_cutdown.m", + "sha256": "bc776fc5f72b0ebfd9553235e2112546c255ab3b77f3941e7250525665d0fa91", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 9, + "row": 4237 + }, + { + "path": "+db_fit/quick_fit.m", + "sha256": "2645af346e833c15fa0af9aa5e6b035d5d2ca0bdd100110c2061df9d8db78e8a", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 4014 + }, + { + "path": "Published/Abeysuriya_2015/fit_br_bic.m", + "sha256": "91a79ed28146f1f0f4fca9a2aed37fe195f985c3672d2c18bc5c37ef874ea5b6", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 3996 + }, + { + "path": "Published/Abeysuriya_2015/fit_cluster.m", + "sha256": "fc9ae869c8fc14e53f67efdabc16c8665fed026d6ffa43f4c352c192d1d9330d", + "language": "MATLAB", + "lines": 106, + "truncated": false, + "block": 9, + "row": 4800 + }, + { + "path": "README.md", + "sha256": "386c1f2aaa8bdffb4a1abdfc0cb2bbe0140cf182ed2491dce0b143cca4fcc156", + "language": "Text", + "lines": 15, + "truncated": false, + "block": 9, + "row": 14463 + }, + { + "path": "data_examples/fit_br_spatial.m", + "sha256": "a1d098d57fb7cd5409e8fc33c50a0f894cfcc6df6979bbf97015deff8cf23632", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 9, + "row": 3120 + }, + { + "path": "data_examples/fit_kaggle.m", + "sha256": "0973458170ce80bf9d527345b576787b1caeb3ce3f88d17f688f6cfa62daaca7", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4257 + }, + { + "path": "data_examples/fit_seizure.m", + "sha256": "a3399e4d5566a4c2eea3861bebcacddc1cdb808fe62c0c35ba456c21cc2db5de", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4023 + }, + { + "path": "data_examples/import_unresponsive.m", + "sha256": "17748fcca586792e81c237e7b3930d3fe7f6a26b7e65bc2682445ed77c2d599d", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3661 + }, + { + "path": "data_examples/load_br_data.m", + "sha256": "8e375fdc13f7328db8cef12f0bfc14ad5fce0c79e4cffe2aeeb7cbcbbfedbe8a", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3512 + }, + { + "path": "data_examples/load_kaggle_data.m", + "sha256": "6557a15af9972e4a8c3935f6f43776226d5bd7dcf0f524c2f8d68e5495ba7e4a", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3455 + }, + { + "path": "data_examples/load_seizure_data.m", + "sha256": "22b3d2681d5d6c1e8f859406575dfeed7ca4cc30c7393096ba08ef7f5b1805b1", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 4106 + }, + { + "path": "license.txt", + "sha256": "3926768fe4c8b5dd18dcaceedb7f22b6396eba4f1aa6e3ce6c64dea15590bedd", + "language": "License", + "lines": 54, + "truncated": false, + "block": 9, + "row": 2893 + } + ] +} \ No newline at end of file diff --git a/manifests/0c/github.com__sulab__drugmechdb.json b/manifests/0c/github.com__sulab__drugmechdb.json new file mode 100644 index 0000000000000000000000000000000000000000..2b14cdbda805baf786b35fbd893fa733834a8f1a --- /dev/null +++ b/manifests/0c/github.com__sulab__drugmechdb.json @@ -0,0 +1,408 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/sulab/drugmechdb", + "url": "https://github.com/SuLab/DrugMechDB", + "host": "github.com", + "commit": "aef224217071216748740c10faeb6db8e3f15901", + "license": "CC0-1.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499", + "language": "License", + "lines": 121, + "truncated": false, + "block": 1, + "row": 2210 + }, + { + "path": "README.md", + "sha256": "28ad60a62b72c95dfa60b57976b3e3f16f19d7389c8a38b3248a17ace386459a", + "language": "Text", + "lines": 151, + "truncated": false, + "block": 9, + "row": 14696 + }, + { + "path": "data_analysis/Top_Metapaths_Sankey.ipynb", + "sha256": "f3d29512f989d41e437ec3e5adf85ab6bf74ab9ec9b23f011ee315af7170d4e6", + "language": "Jupyter", + "lines": 222, + "truncated": false, + "block": 9, + "row": 2434 + }, + { + "path": "data_analysis/dmdb_mrn_bootstrap_analysis.ipynb", + "sha256": "f1eb858a228da8f44638ad4ba60796baaa0c9927c5a0996bb8d9937652a51fbd", + "language": "Jupyter", + "lines": 259, + "truncated": false, + "block": 9, + "row": 2486 + }, + { + "path": "data_analysis/figures_DMDB_manuscript.ipynb", + "sha256": "f42d65c7f67f02261e440f7aff0c78d3d1b20f95ed9f4c691ab7b60dde5335d9", + "language": "Jupyter", + "lines": 671, + "truncated": false, + "block": 9, + "row": 2591 + }, + { + "path": "data_tools/data_tools/__init__.py", + "sha256": "279ee10af65a4f3a4dba045c52f9027c3179b0609ff124f5ba2ce6070f4b29c3", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 9, + "row": 6348 + }, + { + "path": "data_tools/data_tools/df_processing.py", + "sha256": "94c861236bd4e6482cd7e8df92cf0141383ac220d8e17cfde4e05f5f35dbc46f", + "language": "Python", + "lines": 345, + "truncated": false, + "block": 9, + "row": 11238 + }, + { + "path": "data_tools/data_tools/files/__init__.py", + "sha256": "2cf4f745c9108fd310d85f891300dfe5c95822d09b41df4aa05c0513671e7337", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 9, + "row": 6535 + }, + { + "path": "data_tools/data_tools/files/_analysis.py", + "sha256": "839a360dcb2c8b22d329920b1e651221df1d314b4ff314e56aa29d0279229509", + "language": "Python", + "lines": 151, + "truncated": false, + "block": 9, + "row": 9317 + }, + { + "path": "data_tools/data_tools/files/_pathing.py", + "sha256": "a223613267e9642d28da40e425a7e75766b0ff099397ccfb7b24eb640c1c8aad", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6586 + }, + { + "path": "data_tools/data_tools/files/_processing.py", + "sha256": "67c6233411af344d7a49f725a098d1e8254ec4928039239b3831c01e0148bfb7", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7190 + }, + { + "path": "data_tools/data_tools/files/_retrieval.py", + "sha256": "3eb6a3b15589ae759268bbd165c327d47c4faee0f3eae16e826bf131c3eabbfd", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 9, + "row": 10007 + }, + { + "path": "data_tools/data_tools/graphs/__init__.py", + "sha256": "a931339208d99ebf9de82d3cc7c919a0dc8fc4e0be037927c067ff9a2c89d7f7", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6536 + }, + { + "path": "data_tools/data_tools/graphs/_edge_processing.py", + "sha256": "9757510a2bc908f8f699f6d9e85dde3f2c5ae082c8035ac9cf2cca48b816d714", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 9767 + }, + { + "path": "data_tools/data_tools/graphs/_graphs.py", + "sha256": "b186b08a8975d1964bd90a56f7c8b80f1414a76a2a7837c265ca03b5c953a9e9", + "language": "Python", + "lines": 534, + "truncated": false, + "block": 9, + "row": 11865 + }, + { + "path": "data_tools/data_tools/graphs/_metapaths.py", + "sha256": "1a9c3be5f144f607fcd3096c9d5dbe5af6ee45b7af466ba577e30afc13ab9f6b", + "language": "Python", + "lines": 356, + "truncated": false, + "block": 9, + "row": 11332 + }, + { + "path": "data_tools/data_tools/ml.py", + "sha256": "64017593408508f171dbbac1c44facb83b50457144b722d541f02c14fd98ba99", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 9, + "row": 8719 + }, + { + "path": "data_tools/data_tools/obo_processing.py", + "sha256": "4c7630c95b3c7303e59c5ab1b0d5d446c4a4df72d90e5091925b579c4137f1d8", + "language": "Python", + "lines": 568, + "truncated": false, + "block": 9, + "row": 11930 + }, + { + "path": "data_tools/data_tools/plotting/__init__.py", + "sha256": "2072feb3e790b906d2908ab0fd5e107fd69c067a411c0f38c0c2909b076f4ec3", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 9, + "row": 6502 + }, + { + "path": "data_tools/data_tools/plotting/_graphs.py", + "sha256": "ff485ed293dff76f315d707a7c52c600f02767ec6a9a8342a3469c2e92246295", + "language": "Python", + "lines": 552, + "truncated": false, + "block": 9, + "row": 12014 + }, + { + "path": "data_tools/data_tools/plotting/_ml.py", + "sha256": "8ca81d40573ab8b1e0102e17be967d261116de266f632411c0f64579af5a9b02", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 9657 + }, + { + "path": "data_tools/data_tools/plotting/_std.py", + "sha256": "155c03b9e475dab4d0913e4d0f581ced54e730995f31c438a239880905296ceb", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 9, + "row": 8737 + }, + { + "path": "data_tools/data_tools/plotting/_venn.py", + "sha256": "790096ae9f290fed5ad002a3453a2c61a61d0d981db4c53e0f37c353dbf04271", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 8536 + }, + { + "path": "data_tools/data_tools/wiki.py", + "sha256": "70a8ee0600174f33298d94e2a5928223e8aefc3b3a2e62f9667b87351a85c071", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 9013 + }, + { + "path": "data_tools/demo/Graph_Drawing_Demo.ipynb", + "sha256": "73349428cf034502ff710be0b713be7a2a5394ead17ace4ab6d55d7024b74a91", + "language": "Jupyter", + "lines": 354, + "truncated": false, + "block": 9, + "row": 2514 + }, + { + "path": "data_tools/setup.py", + "sha256": "ec6b307ce6635862d933b65cc4083153ddb0acfc6265e2906d74ef80c8dba46b", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 6837 + }, + { + "path": "jekyll.sh", + "sha256": "59befc38718d3ad7a9dcc3aeaf5415f27455cdc844ca8ca7d181880dad2e92f4", + "language": "Shell", + "lines": 3, + "truncated": false, + "block": 9, + "row": 13892 + }, + { + "path": "js/customscripts.js", + "sha256": "220a75ef8016ec03c572fc182db32b90bafad709dde10981ebfebc741a7a05bd", + "language": "JavaScript", + "lines": 54, + "truncated": false, + "block": 9, + "row": 2044 + }, + { + "path": "js/jekyll-search.js", + "sha256": "1ea4bded06691c376d65ab587b11e20c55d85aeefbe84da41fbc07359b9bb17d", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 1309 + }, + { + "path": "js/jquery.ba-throttle-debounce.min.js", + "sha256": "fa7b84bb6e37fba06f79793937e55baf6ebc1bee051e350e11c7ca681a9f3db7", + "language": "JavaScript", + "lines": 9, + "truncated": false, + "block": 1, + "row": 746 + }, + { + "path": "js/jquery.navgoco.min.js", + "sha256": "d8e1e03e6b3df304856951f35a794cbca21ee52d27ec82a3ef423f400391203a", + "language": "JavaScript", + "lines": 8, + "truncated": false, + "block": 1, + "row": 1215 + }, + { + "path": "js/jquery.shuffle.min.js", + "sha256": "4b22a2a4b7e0a58254ffe6a4fe47df342ee03fa9fbfbdad6c187a8c05ec40f17", + "language": "JavaScript", + "lines": 1588, + "truncated": false, + "block": 1, + "row": 1534 + }, + { + "path": "js/toc.js", + "sha256": "27cb4509daa5cdf65394c33a24eb267681952697a9024c008f7cf54e1996a747", + "language": "JavaScript", + "lines": 82, + "truncated": false, + "block": 9, + "row": 2052 + }, + { + "path": "parse.py", + "sha256": "3bfcda67e799b3a593b1a8d3169c22548f966f643d717f6b926396e7454ef39e", + "language": "Python", + "lines": 303, + "truncated": false, + "block": 9, + "row": 11167 + }, + { + "path": "path_visualization.ipynb", + "sha256": "7f771ad4c7e0544fe756867f45b622fd7f9bfcb9c66d28448a1848367a62d9e2", + "language": "Jupyter", + "lines": 143, + "truncated": false, + "block": 9, + "row": 2303 + }, + { + "path": "scripts/update_occurs_in_preserving_format.py", + "sha256": "b7c8c55631a28ec937516a6693f1fc6eaa2560b3b49379e9f6fdc36c9630bd18", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 9, + "row": 9497 + }, + { + "path": "testfile.py", + "sha256": "5a3ce0a07d5615aefdc1cf00ecee9432e25fa2890b7e072250d70231b2870104", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 9, + "row": 6090 + }, + { + "path": "utils/build_indications.py", + "sha256": "672aa93bd4d805783e4bf99e4039cb45bac640176a547806cd2f6fd756bed165", + "language": "Python", + "lines": 646, + "truncated": false, + "block": 9, + "row": 11937 + }, + { + "path": "utils/convert_to_biolink.py", + "sha256": "0ce6ccf4095d48a95dde0a4d0b763c6bd4daa5c622180115ca95e0fe6adfdef9", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 8158 + }, + { + "path": "utils/json_yaml_convert.py", + "sha256": "cc1caa2a72d731e54fa6ed11b29c50af87400e7a89655de10687ba7b9680896a", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 9, + "row": 8203 + }, + { + "path": "utils/pathtester.py", + "sha256": "cba585543f73e2f38c2b651ff55276afdd0bbbabec8cb75eac00351d1e53db23", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 9, + "row": 10374 + }, + { + "path": "utils/plot_paths.py", + "sha256": "f0f067108f4d4bfee783ac2d8e52b38516de1e5498f570a7c84f06122df68b66", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 9, + "row": 9068 + }, + { + "path": "utils/test_indications.py", + "sha256": "c35dde2a2a89be2a0c87a5a54130ee4becdb155734a1f2523a604c5b867cd01a", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6548 + }, + { + "path": "utils/xls_to_json.py", + "sha256": "d8ec39550dddb0bff8561a48747294681e375f33e8df6d92fe40ebe31966baea", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 8764 + } + ] +} \ No newline at end of file diff --git a/manifests/0f/github.com__lodimk2__cortado-marker.json b/manifests/0f/github.com__lodimk2__cortado-marker.json new file mode 100644 index 0000000000000000000000000000000000000000..e294f66af4794ab7a94decb3f82490749be1fb3c --- /dev/null +++ b/manifests/0f/github.com__lodimk2__cortado-marker.json @@ -0,0 +1,102 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/lodimk2/cortado-marker", + "url": "https://www.github.com/lodimk2/cortado-marker", + "host": "github.com", + "commit": "9e348718326cd5649257ce3ee910cfa1b3e0a4f6", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "262f33c6a7c6d50536d583c1521bb229994e75b44749f45165a6de2c0da7558a", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2819 + }, + { + "path": "README.md", + "sha256": "1eb2151d2e312e95260663fb13199d20d4a594e3b249d3d47550651768041fa4", + "language": "Text", + "lines": 145, + "truncated": false, + "block": 9, + "row": 14661 + }, + { + "path": "cortado_marker/__init__.py", + "sha256": "e0971b01ecbbd3e0be7ad84e8a2adca90452c914cd4f0377f7ace95c827e6029", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 9, + "row": 6912 + }, + { + "path": "cortado_marker/data.py", + "sha256": "b21957647e92eeb06bc9256bd35ba820c4e1d963d3e26c9c43f8e262cad52058", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 8128 + }, + { + "path": "cortado_marker/em.py", + "sha256": "a59c6810933bb398fcc8fc3d72f0667537d23502b97ca71984e1a538f9cdd045", + "language": "Python", + "lines": 302, + "truncated": false, + "block": 9, + "row": 11135 + }, + { + "path": "cortado_marker/evaluate.py", + "sha256": "719a46282dc6e2245af9def984577fa3bd32898ed5f5bb3c93a43d470299ce3c", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8805 + }, + { + "path": "cortado_marker/hill_climbing.py", + "sha256": "b01d1dc9866b4a2c148775085f3334c540c6f6a5b3563e68fd315f472ad58f6b", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 9, + "row": 10063 + }, + { + "path": "cortado_marker/marker_genes.py", + "sha256": "8ec99d4cc9f4b30e98d28de9dadb928fbc1ceffa5904f38325796a635e21dcaa", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 9, + "row": 8956 + }, + { + "path": "cortado_marker/utils.py", + "sha256": "657c3a9afc768ef720a85fd4a597ed766a885d57ac17926459a86abe5f49b7a8", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 7868 + }, + { + "path": "setup.py", + "sha256": "6677662a8f4b740fb5a9dc626b4181b85a19deb94d4aab61ce38887b5a36442b", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 7088 + } + ] +} \ No newline at end of file diff --git a/manifests/12/github.com__soltesz-lab__dg-interneurons.json b/manifests/12/github.com__soltesz-lab__dg-interneurons.json new file mode 100644 index 0000000000000000000000000000000000000000..ab2aab908b1ea45b56e4669592ecebf322aeaa61 --- /dev/null +++ b/manifests/12/github.com__soltesz-lab__dg-interneurons.json @@ -0,0 +1,282 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/soltesz-lab/dg-interneurons", + "url": "https://github.com/soltesz-lab/DG-Interneurons", + "host": "github.com", + "commit": "160ca41868460bbf0770ff6e842b2da10d2b8eed", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "DG_analysis.py", + "sha256": "6b256f4e02aed2442270e73c28d0b023cbd03d9a57d63e4b80a5a81fbef74959", + "language": "Python", + "lines": 4013, + "truncated": false, + "block": 9, + "row": 12687 + }, + { + "path": "DG_batch_circuit_dendritic_somatic_transfer.py", + "sha256": "16f158a1e601cd3b1d857e378d36d610adb7dbe39216bd35ba65514e6752465e", + "language": "Python", + "lines": 899, + "truncated": false, + "block": 9, + "row": 12356 + }, + { + "path": "DG_circuit_dendritic_somatic_transfer.py", + "sha256": "694995b3cdb29fde98eff6b8308f0876869c07e176e1d7150a450536f6845cc3", + "language": "Python", + "lines": 1479, + "truncated": false, + "block": 9, + "row": 12558 + }, + { + "path": "DG_circuit_optimization.py", + "sha256": "cb684a5b9e5bff1dbd8a90da8cc54e5612ce713e1ac552f72753104f56a36072", + "language": "Python", + "lines": 2008, + "truncated": false, + "block": 9, + "row": 12606 + }, + { + "path": "DG_circuit_optogenetic_optimization.py", + "sha256": "c3bb91fb728f191d886840b1f3681f7fad07be4ca8a7b424e234553d87b1c0b5", + "language": "Python", + "lines": 2951, + "truncated": false, + "block": 9, + "row": 12673 + }, + { + "path": "DG_optimization_analysis.py", + "sha256": "a0cfa6ff6dcc13f9dd6bab344859c2ad33383c0bfacb3ba256bf6c4e44474288", + "language": "Python", + "lines": 1615, + "truncated": false, + "block": 9, + "row": 12566 + }, + { + "path": "DG_protocol.py", + "sha256": "e2c56a50eaaa000f6af399788cbee96d407afac3b593e02d1e665d0cbea9395e", + "language": "Python", + "lines": 3776, + "truncated": false, + "block": 9, + "row": 12686 + }, + { + "path": "DG_visualization.py", + "sha256": "849be2b2042bac0781908f5763d8d5efc55e651e7b9b075d9b28472f57d8a081", + "language": "Python", + "lines": 2933, + "truncated": false, + "block": 9, + "row": 12672 + }, + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "5a3e79ab27b96c694f3d84be892c94e8383076b945816fd14539851681bfef66", + "language": "Text", + "lines": 470, + "truncated": false, + "block": 9, + "row": 14734 + }, + { + "path": "ablation_tests.py", + "sha256": "ebd91d042a136a3ffc4c8b20ea603d29ff25849e98822577bd069972390985cb", + "language": "Python", + "lines": 2376, + "truncated": false, + "block": 9, + "row": 12654 + }, + { + "path": "adaptive_pso.py", + "sha256": "2da17f69a506c9d5ec3f95958041bdb8873014be8a1882f895366a011ec994d0", + "language": "Python", + "lines": 911, + "truncated": false, + "block": 9, + "row": 12370 + }, + { + "path": "demo_adaptive_pso.py", + "sha256": "19b42953b3ec87515e905acc1bd95047db7ed528be21c9c8a853edb1f9103002", + "language": "Python", + "lines": 330, + "truncated": false, + "block": 9, + "row": 10840 + }, + { + "path": "dendritic_somatic_network_clamp.py", + "sha256": "59ca02739ad491bdf411961f8f1598583e12d1886094ed61a793724785986bc6", + "language": "Python", + "lines": 969, + "truncated": false, + "block": 9, + "row": 12369 + }, + { + "path": "dendritic_somatic_transfer.py", + "sha256": "0feee2b89d47b84abc8dab9ba44330aa9729dd78663a19500c87ee75e5ca546f", + "language": "Python", + "lines": 674, + "truncated": false, + "block": 9, + "row": 12095 + }, + { + "path": "effect_size_decision_framework.py", + "sha256": "49708600a42ea9fc20c15469e535736caf9e8dfb4aaf695d0a791898b2e62c5d", + "language": "Python", + "lines": 862, + "truncated": false, + "block": 9, + "row": 12271 + }, + { + "path": "gradient_adaptive_stepper.py", + "sha256": "de77f154f9d7a57c863e7f2ad992a8d26493b25b6e7944b200ac720f5f835b2a", + "language": "Python", + "lines": 404, + "truncated": false, + "block": 9, + "row": 11378 + }, + { + "path": "hdf5_storage.py", + "sha256": "223cdb2ab354d1d806958a97f5d863d1da7d74ea71db2baea7c74ae03a7e5853", + "language": "Python", + "lines": 485, + "truncated": false, + "block": 9, + "row": 11782 + }, + { + "path": "nested_effect_size.py", + "sha256": "dc62c0003695a9e0bcbabc93c50a173d340cab6ae3323fb5224debd4540c38c8", + "language": "Python", + "lines": 947, + "truncated": false, + "block": 9, + "row": 12338 + }, + { + "path": "nested_experiment.py", + "sha256": "d395ba42f1acf61947c6ea0ad9d8594ef133505dfdb1ee413861e5d34f5c0f6d", + "language": "Python", + "lines": 3798, + "truncated": false, + "block": 9, + "row": 12685 + }, + { + "path": "nested_weights_analysis.py", + "sha256": "b7a7910e324badb2781b0097df65f80f5d08fbf9c11a4fe461682d585f61750c", + "language": "Python", + "lines": 1851, + "truncated": false, + "block": 9, + "row": 12616 + }, + { + "path": "nested_weights_dist_analysis.py", + "sha256": "c425e171ca1ff732cd3b5f56de2e0587640631c61314d3e34a309272961ac6e9", + "language": "Python", + "lines": 2919, + "truncated": false, + "block": 9, + "row": 12676 + }, + { + "path": "optogenetic_experiment.py", + "sha256": "c1e27a09caba5c8e7bcb8ad19be1482741923300ec8307caf66929027bd42657", + "language": "Python", + "lines": 1576, + "truncated": false, + "block": 9, + "row": 12571 + }, + { + "path": "pca_input_weight_patterns.py", + "sha256": "5a83414f8b366f3a2bffd92f875f7cdfefb9cd7de8cb36f013e8b1a81f5261b9", + "language": "Python", + "lines": 1294, + "truncated": false, + "block": 9, + "row": 12489 + }, + { + "path": "statistical_testing.py", + "sha256": "62746f1a7dce1cb18495ee2db05c7bfe5c8f91efdc0a4dcbfa68a6a209c313a5", + "language": "Python", + "lines": 4277, + "truncated": false, + "block": 9, + "row": 12692 + }, + { + "path": "statistical_testing_weights.py", + "sha256": "b6b9d4508c4ee1ec0427be0e4f4205a5e91d4743c0918e13b8fbc6be6e297b74", + "language": "Python", + "lines": 713, + "truncated": false, + "block": 9, + "row": 12160 + }, + { + "path": "test_adaptive_batch_optimization.py", + "sha256": "21b364f05a9c0c8915e7c7051cd47a9f3c4f52958d502b533d594497610e98bd", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 8567 + }, + { + "path": "test_adaptive_optimization.py", + "sha256": "bec0e5bd40c35698bef67fd0ca2a0a6750a89f66e7b96ef6ba7553000ec80b94", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8069 + }, + { + "path": "test_adaptive_optogenetic_optimization.py", + "sha256": "6c47f886a990238148bfacf539e5811056fc6776d7e868416592f61facb8d8e1", + "language": "Python", + "lines": 905, + "truncated": false, + "block": 9, + "row": 12253 + }, + { + "path": "test_adaptive_pso.py", + "sha256": "e8dbe8e30419b3645a417dd36c1de17bd5f40c38682f6e6d296642097e573244", + "language": "Python", + "lines": 704, + "truncated": false, + "block": 9, + "row": 12132 + } + ] +} \ No newline at end of file diff --git a/manifests/13/github.com__choderalab__openmmtools.json b/manifests/13/github.com__choderalab__openmmtools.json new file mode 100644 index 0000000000000000000000000000000000000000..838abe9f575b099c52acb1935d3288a53c80ef5c --- /dev/null +++ b/manifests/13/github.com__choderalab__openmmtools.json @@ -0,0 +1,579 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/choderalab/openmmtools", + "url": "https://github.com/choderalab/openmmtools/tree/0.25.3", + "host": "github.com", + "commit": "f6ef22a8b9f66e582df2ffa62f3bb6516de43536", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "30d36b339c933e8673b807eeb7aac15cea8b31cfe391c0ad717f22f3210859fa", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2863 + }, + { + "path": "README.md", + "sha256": "9a0e63515349210ead00a52988928785a3b7f565d637672ec7649103014f5aa7", + "language": "Text", + "lines": 49, + "truncated": false, + "block": 9, + "row": 14588 + }, + { + "path": "docs/conf.py", + "sha256": "f16fb53582f2ede31adcebd35c72979cf71691ff2d69f71419623518efc11796", + "language": "Python", + "lines": 199, + "truncated": false, + "block": 9, + "row": 9943 + }, + { + "path": "examples/integrator-benchmarks/integrator-benchmarks.py", + "sha256": "7b9e0394106396c066d3de85a8e7fe8626a6245f9f9b12c39599f763540e8c0d", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8354 + }, + { + "path": "openmmtools/__init__.py", + "sha256": "87708625dc87f01bf4eef8de6d029fc8af5e5317d218dcb6f89eb62c52bfe8df", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6644 + }, + { + "path": "openmmtools/_version.py", + "sha256": "8f24c7163f44766e1812cf076f8dc14613fab57f8582c3bef9f8719d3789d64a", + "language": "Python", + "lines": 683, + "truncated": false, + "block": 9, + "row": 12061 + }, + { + "path": "openmmtools/alchemy/__init__.py", + "sha256": "b76c65532753eac8a204d42092035f2fbd956b06f139e9a08e99c1ba83affa1a", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6955 + }, + { + "path": "openmmtools/alchemy/alchemy.py", + "sha256": "557edff2c0e4006892bf46fdd1db720ba3ce4d7f9bc48d4d535977a96711f91b", + "language": "Python", + "lines": 2545, + "truncated": false, + "block": 9, + "row": 12674 + }, + { + "path": "openmmtools/cache.py", + "sha256": "cb59e494610dbd871db5d15fa5f3f71683c148b733eccfe86b2ef96ca77ffd7e", + "language": "Python", + "lines": 811, + "truncated": false, + "block": 9, + "row": 12280 + }, + { + "path": "openmmtools/constants.py", + "sha256": "eee11d88e2fefde2780a6940e6f4ddc94273066fc7117e407e9d16ca6c423dcb", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6875 + }, + { + "path": "openmmtools/data/alanine-dipeptide-explicit/generate-pdb.py", + "sha256": "1fd73c72b2d66faa48700b513974795c50b1d29e0d832bc54ba5257dbde40928", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6756 + }, + { + "path": "openmmtools/data/alanine-dipeptide-explicit/run.sh", + "sha256": "938e742f7f3216a854bc3440af9e2706e284c63a96f7d2663b3719138663d540", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 9, + "row": 13952 + }, + { + "path": "openmmtools/data/alanine-dipeptide-gbsa/run.sh", + "sha256": "4430c79b58f37d87ff53a95c615f5b47f2330162485cfd7680cf95c15f245740", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 9, + "row": 13944 + }, + { + "path": "openmmtools/data/benzene-toluene-implicit/generate-molecules.py", + "sha256": "ee719ee9b4834f5dad4d1dc47dc15adad8d604641754609190e858c7a0b36b5f", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7421 + }, + { + "path": "openmmtools/data/benzene-toluene-implicit/setup.sh", + "sha256": "5b4076b316f6d5328046d216ea6307dd1818382f7f6daad65e89f0a826297fb6", + "language": "Shell", + "lines": 19, + "truncated": false, + "block": 9, + "row": 14079 + }, + { + "path": "openmmtools/data/cb7-b2/setup.sh", + "sha256": "ded6dc7d979f0a57d185148bf7fe66dec4f96a0153e97169f93b3266f32b7fc2", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 9, + "row": 13943 + }, + { + "path": "openmmtools/data/cb7-viologen/leap/setup.sh", + "sha256": "0e67a5761a7cc13c3613548f20bf93b8c25846c5875f3e476c69551dec1e4189", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14076 + }, + { + "path": "openmmtools/data/cb7-viologen/molecules/create-viologen.py", + "sha256": "a7a395ce06d2962d20802eb49e97601883436c1b762f6079983577059601af44", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 7935 + }, + { + "path": "openmmtools/data/dna_dodecamer_explicit/minimize.py", + "sha256": "b4ecb8b6b2a4909e0faabaa9526efce7973e110f9ff421cf1a6913e5dc9a76c8", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7643 + }, + { + "path": "openmmtools/data/src-explicit/prepare_pdb.py", + "sha256": "eb10b53aaa98a9b78b3e4c47bf0cffd0ffe58a974810d9c776e49b0092f28f25", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 9, + "row": 9152 + }, + { + "path": "openmmtools/data/src-implicit/prepare_pdb.py", + "sha256": "af6bf2ed2b7cd122dbcb09c31f03dc45a08c7f9a3c35b644a9e7fdd51df2e48a", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 9159 + }, + { + "path": "openmmtools/forcefactories.py", + "sha256": "189db12acae636422b4c5cd69ad6f549dcf2ac460f953f275322f880524c65dd", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 9, + "row": 10352 + }, + { + "path": "openmmtools/forces.py", + "sha256": "3114557beac93c09fc6cfb23140b05a46dd9dbad22e1b8ae3c4b10f64e96b5cf", + "language": "Python", + "lines": 1352, + "truncated": false, + "block": 9, + "row": 12530 + }, + { + "path": "openmmtools/integrators.py", + "sha256": "2f1e8f44a12a0760640ae18ec975a9638662a482fbfdc25fafb4a4fae619edb6", + "language": "Python", + "lines": 2469, + "truncated": false, + "block": 9, + "row": 12656 + }, + { + "path": "openmmtools/mcmc.py", + "sha256": "2b7cc5f7110f65ac89c62a35cebe718937c0308806a5272a6960c2bba8673e1c", + "language": "Python", + "lines": 1929, + "truncated": false, + "block": 9, + "row": 12599 + }, + { + "path": "openmmtools/multistate/__init__.py", + "sha256": "9d72d14c5cdda3928625807f2e58f9bce55ef89aaade2ad574b3ee2438cf58fd", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 8452 + }, + { + "path": "openmmtools/multistate/multistateanalyzer.py", + "sha256": "87e398926101b617ee397f8d3201e9276a16da601f2a6681428584e736ea4c3b", + "language": "Python", + "lines": 2569, + "truncated": false, + "block": 9, + "row": 12662 + }, + { + "path": "openmmtools/multistate/multistatereporter.py", + "sha256": "8617e6aaeee44c4ab45ba3f64e906b4688dce9e80815e623e1c5da11a3977064", + "language": "Python", + "lines": 1939, + "truncated": false, + "block": 9, + "row": 12633 + }, + { + "path": "openmmtools/multistate/multistatesampler.py", + "sha256": "98bfdd18a5790dad3aa6c552303f9d1206648f5ab34b329bef9c1099f9a3c9ff", + "language": "Python", + "lines": 1827, + "truncated": false, + "block": 9, + "row": 12638 + }, + { + "path": "openmmtools/multistate/paralleltempering.py", + "sha256": "55b04c915ee3cb7f7179e38b469074e54c9f29b4cb88468708c7ea8ab51eaaab", + "language": "Python", + "lines": 260, + "truncated": false, + "block": 9, + "row": 11132 + }, + { + "path": "openmmtools/multistate/pymbar.py", + "sha256": "e63b640a8a019fbf0fd44dc0886f38e6a1453f2422808c35368957c682f528de", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7635 + }, + { + "path": "openmmtools/multistate/replicaexchange.py", + "sha256": "b41e629ccd8f2a4314f6d0b9cdf7589575d007c37af1136004a3bc1baf60c678", + "language": "Python", + "lines": 451, + "truncated": false, + "block": 9, + "row": 11971 + }, + { + "path": "openmmtools/multistate/sams.py", + "sha256": "95fc292315208bd6773b01a1cd31c1902908c14b882bfc8d1344e842f1cde84b", + "language": "Python", + "lines": 713, + "truncated": false, + "block": 9, + "row": 12365 + }, + { + "path": "openmmtools/multistate/utils.py", + "sha256": "ec9a8f5a2c0f4aeae8f85f0dd7bd0b93b7c3259f708b8353c11b41f5b77f8777", + "language": "Python", + "lines": 295, + "truncated": false, + "block": 9, + "row": 11122 + }, + { + "path": "openmmtools/respa.py", + "sha256": "0412b98b1ad38cb4796c66b39830b6797bc4937f75351727db3e4bc88865a0fc", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 9384 + }, + { + "path": "openmmtools/scripts/test_openmm_platforms.py", + "sha256": "46190a3664da00bcf3838582092c1c1f06f89acc729fd20a8d4bda76da7939ff", + "language": "Python", + "lines": 538, + "truncated": false, + "block": 9, + "row": 12000 + }, + { + "path": "openmmtools/sobol.py", + "sha256": "dfdc17547302b9dd74b864e547ff5da502fb718acd363b5c98a894c2f5230d9d", + "language": "Python", + "lines": 614, + "truncated": false, + "block": 9, + "row": 11624 + }, + { + "path": "openmmtools/states.py", + "sha256": "7ab836862cbbec7540820d40559819d78ecae4a1e854f35337ed0b50af3c26f9", + "language": "Python", + "lines": 3971, + "truncated": false, + "block": 9, + "row": 12688 + }, + { + "path": "openmmtools/storage/__init__.py", + "sha256": "282f6efff15fd77a9ee95b711bd37ff363e792d1ab57a7b5c739276afe6f5b10", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 9082 + }, + { + "path": "openmmtools/storage/iodrivers.py", + "sha256": "01cfd21142658ab394aa34a5b9c8a399ab22026c2a5858c6e2bbccf03cd6b85f", + "language": "Python", + "lines": 1620, + "truncated": false, + "block": 9, + "row": 12545 + }, + { + "path": "openmmtools/storage/storageinterface.py", + "sha256": "c3963c4e0c671e30d10aa81c46383b3d99e987f0e5433a9c4a71af0d2bed86c6", + "language": "Python", + "lines": 499, + "truncated": false, + "block": 9, + "row": 11853 + }, + { + "path": "openmmtools/tests/conftest.py", + "sha256": "97bc30e06ca4c92a25edda0385beaa75dba55ecb11aa37acdf335875a59d3a55", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6734 + }, + { + "path": "openmmtools/tests/test_alchemy.py", + "sha256": "7f50cab7e89f8acc9260733a0a845146fff070e52d8ce9febdcd2cded57e68dc", + "language": "Python", + "lines": 3165, + "truncated": false, + "block": 9, + "row": 12671 + }, + { + "path": "openmmtools/tests/test_cache.py", + "sha256": "7b1bdb637c3c54331f00ac2d70babef35fb25b535e0f90a81eca6ce7e53c6330", + "language": "Python", + "lines": 465, + "truncated": false, + "block": 9, + "row": 11721 + }, + { + "path": "openmmtools/tests/test_forcefactories.py", + "sha256": "6896a1fda408a1797c0c49052ecb40de5e92ec84bdaaa5209a83be645c3d0b07", + "language": "Python", + "lines": 233, + "truncated": false, + "block": 9, + "row": 10414 + }, + { + "path": "openmmtools/tests/test_forces.py", + "sha256": "e07b933dcc6a9f051667c709a7abcf4b8e313dde7671414d1ec59b14f08aac90", + "language": "Python", + "lines": 421, + "truncated": false, + "block": 9, + "row": 11646 + }, + { + "path": "openmmtools/tests/test_integrators.py", + "sha256": "8b6475963061e753ce8e86e0a53cf6391ba339a116d48ae52018d329193bb921", + "language": "Python", + "lines": 1251, + "truncated": false, + "block": 9, + "row": 12477 + }, + { + "path": "openmmtools/tests/test_integrators_and_testsystems.py", + "sha256": "63844ae9cf0a0403182bb2f1350909ab35957df686478b695e419aac8399accd", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 9, + "row": 9095 + }, + { + "path": "openmmtools/tests/test_mcmc.py", + "sha256": "f7ff73b6fec963a43e5e464f03b4548c061bc8272046c02d4215344ccc430ff3", + "language": "Python", + "lines": 645, + "truncated": false, + "block": 9, + "row": 12107 + }, + { + "path": "openmmtools/tests/test_mixing.py", + "sha256": "4d0f61fa65596c9b3ecab16229442dc894f680e457307fb5b483f47e36b1054b", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8720 + }, + { + "path": "openmmtools/tests/test_platforms.py", + "sha256": "b1eac01142f3170332e99df762fc20f81c839181ab15e6dac94f8929d89028b1", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 9, + "row": 6460 + }, + { + "path": "openmmtools/tests/test_sampling.py", + "sha256": "46804d65d327395981471213753c9b33642c0aa865ac87633168ba5d647ec88f", + "language": "Python", + "lines": 3097, + "truncated": false, + "block": 9, + "row": 12679 + }, + { + "path": "openmmtools/tests/test_states.py", + "sha256": "2dc15ca31116710335139acb4f87108793119890e54e57a2665ae1a50690ee50", + "language": "Python", + "lines": 2720, + "truncated": false, + "block": 9, + "row": 12668 + }, + { + "path": "openmmtools/tests/test_storage_interface.py", + "sha256": "3272d11346b241438f371de20912919398db1b982e8379c2d700356184249df0", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 9, + "row": 10001 + }, + { + "path": "openmmtools/tests/test_storage_iodrivers.py", + "sha256": "be5257e49593903cdb3c3a0ec7dc32b87f8d275520932a3ad574516a64e48dcf", + "language": "Python", + "lines": 293, + "truncated": false, + "block": 9, + "row": 11077 + }, + { + "path": "openmmtools/tests/test_testsystems.py", + "sha256": "d0ab477baa92ab52b2dcff9f54627df05a728aba5f50e7b9f4d52ddbe0cf1aa6", + "language": "Python", + "lines": 272, + "truncated": false, + "block": 9, + "row": 10455 + }, + { + "path": "openmmtools/tests/test_utils.py", + "sha256": "23a5c9c5a16d83e913306385767d664b4526d0bfbd53a1826b1a339d679bc010", + "language": "Python", + "lines": 778, + "truncated": false, + "block": 9, + "row": 12209 + }, + { + "path": "openmmtools/testsystems.py", + "sha256": "ec75369bb84b2c55be1585e91aead4efd86d95ce6ad08c7ee911b94aac15f0d7", + "language": "Python", + "lines": 4612, + "truncated": false, + "block": 9, + "row": 12690 + }, + { + "path": "openmmtools/utils/__init__.py", + "sha256": "3564c0a8eec8095de63d551284ebd3a45b2a03ed04d324448e55bee1853a2315", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7027 + }, + { + "path": "openmmtools/utils/equilibration.py", + "sha256": "9cbd74c86bd6ef6fbd1d90929744500de394aafcced0406e6f71bbb263746aae", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 10071 + }, + { + "path": "openmmtools/utils/utils.py", + "sha256": "423101cb16f647fa55b9a9dd5c88c313c12b3f8662821e82df9eae5f2f7be740", + "language": "Python", + "lines": 1040, + "truncated": false, + "block": 9, + "row": 12333 + }, + { + "path": "setup.py", + "sha256": "4c7a84973abd7e5573536b08836345fa4d53c0098e94ebe9174cf9d1c34bc29f", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 8502 + }, + { + "path": "versioneer.py", + "sha256": "d563556e8683f180fcb59036ab71d35954b3f5d00a272080788d5a85d92ab3f3", + "language": "Python", + "lines": 2271, + "truncated": false, + "block": 9, + "row": 12626 + } + ] +} \ No newline at end of file diff --git a/manifests/14/github.com__ci-lab-cz__crem-pharm.json b/manifests/14/github.com__ci-lab-cz__crem-pharm.json new file mode 100644 index 0000000000000000000000000000000000000000..8a7d13ed9d0f00d235a7cb7ac076720c8cb80f6b --- /dev/null +++ b/manifests/14/github.com__ci-lab-cz__crem-pharm.json @@ -0,0 +1,111 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ci-lab-cz/crem-pharm", + "url": "https://github.com/ci-lab-cz/crem-pharm", + "host": "github.com", + "commit": "8f094b3263856deffe65ccdcbe5c72c4c3de7aa4", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "8df8c5999a479b11fe1574c2d8eee9f30ebb01bf6c402da735460927f75fb4ac", + "language": "Text", + "lines": 151, + "truncated": false, + "block": 9, + "row": 14697 + }, + { + "path": "crempharm/__init__.py", + "sha256": "df0544b36403ffb39c4e50fdedc65d09e8b37768546c927419e20ef304088eb9", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6094 + }, + { + "path": "crempharm/database.py", + "sha256": "22bc37f6bfacc873e34a6be2c09fc1d9317a2892eabf7590a486e91f94bf02f0", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 9, + "row": 9507 + }, + { + "path": "crempharm/expand_mol.py", + "sha256": "28c5e8e096c471b33cefda1d06849f44cafb55c856b29018e49cba3e52a78b7f", + "language": "Python", + "lines": 894, + "truncated": false, + "block": 9, + "row": 12322 + }, + { + "path": "crempharm/pgrow.py", + "sha256": "059d5d87a0d3546b3e336be9cd5455f0adc2d3e4c77839028a816251f4c3e7a3", + "language": "Python", + "lines": 588, + "truncated": false, + "block": 9, + "row": 12150 + }, + { + "path": "crempharm/pharm_class.py", + "sha256": "3769bfef854e0e2df90002046fe12872eb46535cc9def3e1c4572707745f75e9", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 9, + "row": 8827 + }, + { + "path": "crempharm/scripts/create_hash_db.py", + "sha256": "d4eb79d5551c265f603fa0ea486922593d77af516213a142d33a131b48aa049f", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 9892 + }, + { + "path": "crempharm/scripts/crem_db_labeling.py", + "sha256": "64bd1e5532e960f7c2cc63dbde409d20813c65e95143d2b4eb4dbe556d5b5036", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 9, + "row": 10067 + }, + { + "path": "crempharm/scripts/get_mols_seq.py", + "sha256": "8c1d38e262b8e89d0ea1a24c88f56bf7a67fb04beb218914a8ffa89eb56f84e8", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7887 + }, + { + "path": "setup.py", + "sha256": "fb3a77c2a85106bcfa8833bcbd8c7d7f0d59d592ca9603342b750a80f48f9bdf", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7484 + } + ] +} \ No newline at end of file diff --git a/manifests/15/github.com__markusdrag__genometowindows.json b/manifests/15/github.com__markusdrag__genometowindows.json new file mode 100644 index 0000000000000000000000000000000000000000..d2803777fcb0f8191959f8f100d1e37a0fb9010e --- /dev/null +++ b/manifests/15/github.com__markusdrag__genometowindows.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/markusdrag/genometowindows", + "url": "https://github.com/markusdrag/GenomeToWindows", + "host": "github.com", + "commit": "c1249ffdc909e6a3625ea47155a26a1714b1a54d", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "52a73cc199013d295b808f2d0fb5fa9df5656a5d1981ae3579058b1bd10e7789", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2787 + }, + { + "path": "README.md", + "sha256": "06447b5601c8f9dba25c4589181ade032e920ef41a3b38252e2d3cfd9ef27517", + "language": "Text", + "lines": 214, + "truncated": false, + "block": 9, + "row": 14682 + }, + { + "path": "example_usage.sh", + "sha256": "a0f0c6f9962626d4aa264c090640c101d8fb9f86d9694bcf75f67e88b44eee80", + "language": "Shell", + "lines": 63, + "truncated": false, + "block": 9, + "row": 14268 + }, + { + "path": "install.sh", + "sha256": "12c3acce8dc64851936636b96e44b13b5504b882e9d2654d7088b0b07b2f4358", + "language": "Shell", + "lines": 198, + "truncated": false, + "block": 9, + "row": 14366 + }, + { + "path": "window_those_genomes.sh", + "sha256": "120a509246a3648173b70fd16d6b9240ab7d544bf89c43b54a5f72b8f04f05a1", + "language": "Shell", + "lines": 483, + "truncated": false, + "block": 9, + "row": 14408 + } + ] +} \ No newline at end of file diff --git a/manifests/15/zenodo__18826425.json b/manifests/15/zenodo__18826425.json new file mode 100644 index 0000000000000000000000000000000000000000..a03f9cb12fc119f5ad0795750d1b8cf454def486 --- /dev/null +++ b/manifests/15/zenodo__18826425.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18826425", + "url": "https://zenodo.org/records/18826425", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Proteomic_Analysis_Dengetal.Rmd", + "sha256": "5138101bfd67f4ca9545a7b30fa995a1ae487ec46b377d671a8ca13efb2e0e45", + "language": "R", + "lines": 1188, + "truncated": false, + "block": 9, + "row": 13854 + }, + { + "path": "RNAseq processing.zip/justHOMER_repeats_JDD.sh", + "sha256": "2dac28fe8b12a80c7dcd8c4ac6dd7d49da8d2e31c8742cd22fbf1063883bf5d3", + "language": "Shell", + "lines": 10, + "truncated": false, + "block": 9, + "row": 13932 + }, + { + "path": "RNAseq processing.zip/justHOMER_tags_JDD.sh", + "sha256": "a50a0543daa06e0460d74a85c9e8fb8dbff012412bdfa4a832c81e4761e4e2dc", + "language": "Shell", + "lines": 10, + "truncated": false, + "block": 9, + "row": 13918 + }, + { + "path": "RNAseq processing.zip/justSTAR_JDD.sh", + "sha256": "6206c75d5a8c6a42a747aa9fbc00dc86a0390f9ae672c889c9b8a0be2db6026f", + "language": "Shell", + "lines": 63, + "truncated": false, + "block": 9, + "row": 14246 + }, + { + "path": "RNAseq_Analysis_Dengetal.Rmd", + "sha256": "cde95f5d3497c65af05dc715c17d404e5195b95a3ba376d454975e3b279e2095", + "language": "R", + "lines": 1135, + "truncated": false, + "block": 9, + "row": 13852 + } + ] +} \ No newline at end of file diff --git a/manifests/16/zenodo__18626601.json b/manifests/16/zenodo__18626601.json new file mode 100644 index 0000000000000000000000000000000000000000..e4ded9ea5b7182dae396ff7b42770b3ee995e41c --- /dev/null +++ b/manifests/16/zenodo__18626601.json @@ -0,0 +1,687 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18626601", + "url": "10.5281/zenodo.18626601", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "PRAD_Behavioral_Dynamics/StartHere_PRADs.m", + "sha256": "54f9ec8453a74358a639ddb7667ef333b27fc634e63f1107681a91a9f0b654f5", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3741 + }, + { + "path": "PRAD_Behavioral_Dynamics/SummarizeResults.m", + "sha256": "8736ca47e9dff75ae42027eaa46275d7208dfbff44a2533935d508027cc0cdf2", + "language": "MATLAB", + "lines": 451, + "truncated": false, + "block": 9, + "row": 5762 + }, + { + "path": "PRAD_Behavioral_Dynamics/chkconv.m", + "sha256": "5e8cb9e89c43ef63e7566fc3b8249c7b1d2ec7dd9604dbf8a1bf0b8eb1b8b0ca", + "language": "MATLAB", + "lines": 144, + "truncated": false, + "block": 9, + "row": 4621 + }, + { + "path": "PRAD_Behavioral_Dynamics/matjagsRAND.m", + "sha256": "fc24c61747f7c8b4b7790a5d3ce9a050f0495c214609aa1788d56f352236f784", + "language": "MATLAB", + "lines": 904, + "truncated": false, + "block": 9, + "row": 5884 + }, + { + "path": "PRAD_Behavioral_Dynamics/sst_jags_and_save.m", + "sha256": "05dbac160ce80e9cb0cca886d7faf2f3123eac556887a4a12ce2340247e38f2f", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 9, + "row": 4890 + }, + { + "path": "PRAD_Behavioral_Dynamics/sst_prepare_for_jags.m", + "sha256": "7cba13056336c963865b1f3ee4a06ec8c5fb3501af38af3d69649e12092da503", + "language": "MATLAB", + "lines": 203, + "truncated": false, + "block": 9, + "row": 5430 + }, + { + "path": "README.md", + "sha256": "685da815e2d3642f6b58624000cb17ca0cf6b49d76b497c13b62a116a9d93490", + "language": "Text", + "lines": 118, + "truncated": false, + "block": 9, + "row": 14610 + }, + { + "path": "behavioral/correlations.py", + "sha256": "99a2beeac81172ca35adf5e85d8520fc616bc5eab10af002edd51c5c7babb5be", + "language": "Python", + "lines": 166, + "truncated": false, + "block": 9, + "row": 9780 + }, + { + "path": "behavioral/get_SST_pm_behav.m", + "sha256": "750f1bf9b7abe027cc5b992094eb3f66c784fed9b2baf23fc08044fbe5f48f35", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3390 + }, + { + "path": "behavioral/get_SST_pm_cog.m", + "sha256": "fcb20726a2b097fdf24290dffd0f7ab1737a55f3931a45ccf73eb3ee105ad9b0", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 3086 + }, + { + "path": "behavioral/get_SST_pm_cog_control_models.py", + "sha256": "5edbc679ecf53511b93f6fd73946fcc90aab4138915ee992e20c22dd9862973d", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 8091 + }, + { + "path": "behavioral/get_SST_pm_cog_control_models_test.py", + "sha256": "5878db36379b5777d1ec014ec637a01aec803f43fb72df3b681f2031cc494fe2", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7444 + }, + { + "path": "behavioral/npz_rip_cog_behav.py", + "sha256": "6cdfb5c8236ff30f9df9660309d352c2fd11dfefddff518c39e966d1edebbbb7", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8535 + }, + { + "path": "behavioral/npz_rip_cog_behav_test.py", + "sha256": "a5eb27b7a820bf81256e0240db0a2a21a346066134c58224ecd68a367cb2261d", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 9, + "row": 6771 + }, + { + "path": "get_prad.sh", + "sha256": "3b44b8dd0e753028c141af9e3edc1fb90843059c905db83adb006313729ef884", + "language": "Shell", + "lines": 7, + "truncated": false, + "block": 9, + "row": 13931 + }, + { + "path": "image_masks/make_DMN.py", + "sha256": "745847b69fb1f2b8f5674c5cc454cfcb2bdf641457d0a885e1fe0b566c5afda9", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 9, + "row": 7231 + }, + { + "path": "image_masks/make_dACC.py", + "sha256": "730748a7ada256781145021e2f23ce3dcd62d64dac7a66e39294c270e0dbc4c6", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6963 + }, + { + "path": "image_masks/make_subcortical_ROIs.py", + "sha256": "f93836caedaaa7d8e4f0116d9c749f7da4199fcc137a1fb2d5df59db8b39f055", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7721 + }, + { + "path": "paths.py", + "sha256": "5d67bb7cefa333c675c7c13ed921d2d33b0afcb7f317565300b41af166bc4fe5", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 6997 + }, + { + "path": "taskfmri/0_subjectlist/inclusions_1.py", + "sha256": "891fa2d0db63b1c50bb0a88e293d64386d5a99d04b0352c45e2a24df9c24b0f4", + "language": "Python", + "lines": 483, + "truncated": false, + "block": 9, + "row": 11615 + }, + { + "path": "taskfmri/0_subjectlist/inclusions_1_scanner_info_included_family_member.py", + "sha256": "98f7b83697c10ba442650328bc698ba8488f16cffaf609bde8c601194788cd2a", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8889 + }, + { + "path": "taskfmri/0_subjectlist/inclusions_control_models.py", + "sha256": "5158a87667b9ecc18d46659640fe4416d0aff18c4ba884e78aedacf54883b6cb", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7157 + }, + { + "path": "taskfmri/0_subjectlist/sex.py", + "sha256": "afee0c53099879b7bd8a8df40d42d800faa4cf6e77c10643328a3222812b3bc2", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7164 + }, + { + "path": "taskfmri/0_subjectlist/sl.py", + "sha256": "2470d2f1a39c0cbf2446d6e36de9d5f6359f1776c99cf6a364b971f853ae8070", + "language": "Python", + "lines": 112, + "truncated": false, + "block": 9, + "row": 9170 + }, + { + "path": "taskfmri/0_subjectlist/sl_test.py", + "sha256": "f2e41988bc70bd98dc9e5a4b0a2a240fb12793ad8e91da73f31f1e4451694f23", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 9, + "row": 6697 + }, + { + "path": "taskfmri/1_preprocess/im_proc.py", + "sha256": "1e1f20f746f9ad302a2dc617af08b8f1714ebcf891a76f40411aa64e58662c59", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 8834 + }, + { + "path": "taskfmri/1_preprocess/im_proc.sh", + "sha256": "528e6706dc402a7959d61a076941769135442e1cfbc15208ff2ccb0867f6f24c", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 9, + "row": 14064 + }, + { + "path": "taskfmri/2_design/design.py", + "sha256": "550c19ba7dd734a96b214b1367560a4500cec07feea96989f33b98b8c0079eb9", + "language": "Python", + "lines": 659, + "truncated": false, + "block": 9, + "row": 12184 + }, + { + "path": "taskfmri/2_design/run_design.py", + "sha256": "911c13d20c146be1522c37a51e7ad5426b5bd2d9ae42b4090b46de3cb43d9066", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 9, + "row": 7971 + }, + { + "path": "taskfmri/2_design/run_design_pradG.py", + "sha256": "db2157833f3b05679054cfbed3dc052de8a8a6118a8f6b1dc3b23afdc65a0f8a", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 7822 + }, + { + "path": "taskfmri/2_design/run_design_pradIR.py", + "sha256": "94731e458ce25a4c0a3834b67c473b256eb94725147cf8c5aeac1cfa375a78c7", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 7824 + }, + { + "path": "taskfmri/2_design/run_design_rvm.py", + "sha256": "0f03d8ffcbfdf3774061ab22b1c8f7e6e9c7b86878d1a7908283232e89eff513", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 7716 + }, + { + "path": "taskfmri/3_individualstats/individualstats.py", + "sha256": "6e1494aef71992d2d79ef77b43388ce74992b47776e3dc46fa9f46f0402b390b", + "language": "Python", + "lines": 182, + "truncated": false, + "block": 9, + "row": 10317 + }, + { + "path": "taskfmri/3_individualstats/run_individualstats.py", + "sha256": "3f59f2b37327a09557fa1d42c8a046af4adbd345a644155ac14c5f7fceff871d", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8291 + }, + { + "path": "taskfmri/3_individualstats/run_individualstats_oom.py", + "sha256": "52568c70e621e3803cc137ab83400739acffa5dedf9ae819e4424ee7a8dbc868", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 8413 + }, + { + "path": "taskfmri/3_individualstats/run_individualstats_pradG.py", + "sha256": "9daecbe4a8483c1abb11b03e8bc7464a5c63ed162279b4e99b6e055df94e08dc", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7568 + }, + { + "path": "taskfmri/3_individualstats/run_individualstats_pradIR.py", + "sha256": "5df1514c3be3b24855d0e7673f7f52bf257ad95b56c279a826286f5636769062", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7569 + }, + { + "path": "taskfmri/3_individualstats/run_individualstats_rvm.py", + "sha256": "35bb4a1bbc01c6716896f97118f6d312389ec5815bbfcd76d795a9399168783d", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7564 + }, + { + "path": "taskfmri/4_groupstats/groupstats.py", + "sha256": "70d0928af8fc8cf2b5eb2ebf1140448b66bcc6c728dbbd4360007f9b5163aa34", + "language": "Python", + "lines": 617, + "truncated": false, + "block": 9, + "row": 12056 + }, + { + "path": "taskfmri/4_groupstats/groupstats_one_sample_WB.py", + "sha256": "37f8ed3e9cb6e683def25cf54c93159087b06d671a536556af85179feaf8dd0e", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 9705 + }, + { + "path": "taskfmri/4_groupstats/groupstats_rema.py", + "sha256": "a36ce2df7485b3dbf31420dc74e31e74bd4641a16f22cddd997b558f03d42a13", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 9, + "row": 8349 + }, + { + "path": "taskfmri/4_groupstats/print_n.py", + "sha256": "b6b48b25735bebf6fe30dd0e5633000a288fc115b743f8c5642245d324e54086", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 7101 + }, + { + "path": "taskfmri/4_groupstats/run_groupstats_one_sample_WB.py", + "sha256": "87d523a49dbc60b5f2f54723828aaf41b25bfac64eff81a43bbcaeab1fb1eb09", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 7673 + }, + { + "path": "taskfmri/4_groupstats/run_groupstats_one_sample_WB_pradG.py", + "sha256": "08735faab58ab365bcd4aef6f372b7b5381ca34ae3642dc47f0cbb4e92f93da9", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7574 + }, + { + "path": "taskfmri/4_groupstats/run_groupstats_one_sample_WB_pradIR.py", + "sha256": "c7b2b72b3e38a3fb2dcdbe24bae9f8818c01dc39474b84f767afc0c13309859b", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7575 + }, + { + "path": "taskfmri/4_groupstats/run_groupstats_one_sample_WB_rvm.py", + "sha256": "7a1466386e6a4eddf980c05e84a9249c1720a655babaf4b7d2682452ebe8c414", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7573 + }, + { + "path": "taskfmri/4_groupstats/subject_average_mods.ipynb", + "sha256": "c93f09f05094b38cdface907f2cf7fadd091ca8b6830d4a19e1eca95b01fecc5", + "language": "Jupyter", + "lines": 50, + "truncated": false, + "block": 9, + "row": 2212 + }, + { + "path": "taskfmri/5_more_second_level/anatomical_nonergodicity.ipynb", + "sha256": "00a52d67efe3385147ddf82e9793376f742b7ea2c0faa2afe8d762b6fcfe3067", + "language": "Jupyter", + "lines": 108, + "truncated": false, + "block": 9, + "row": 2332 + }, + { + "path": "taskfmri/5_more_second_level/permutations.ipynb", + "sha256": "370971bc974deb45d0cc85cb3cc00cce36ff3f295893f07c72e96d3520c8c520", + "language": "Jupyter", + "lines": 475, + "truncated": false, + "block": 9, + "row": 2635 + }, + { + "path": "taskfmri/5_more_second_level/permutations.py", + "sha256": "a180ef5f19a599e39fe789a01e1bcc79ca5c99bc34ebabd3e01fe44a2c017075", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6943 + }, + { + "path": "taskfmri/5_more_second_level/resample.py", + "sha256": "d2b79a95b81f8fbbafb6aa9ceb5f86d4bdef2a509ead4358b75f43fc43d8a3fc", + "language": "Python", + "lines": 151, + "truncated": false, + "block": 9, + "row": 9589 + }, + { + "path": "taskfmri/5_more_second_level/rsa.py", + "sha256": "551d84f685a26541b794fef6b79cf6cf1d9589d2eec3a290ae63bd0c89d5371a", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 8804 + }, + { + "path": "taskfmri/6_plotting/anatomical_nonergodicity.ipynb", + "sha256": "4258915ef632ee4808ed385f6d4b55362c1ff0abd0ed45df0a295219d3df71c8", + "language": "Jupyter", + "lines": 224, + "truncated": false, + "block": 9, + "row": 2474 + }, + { + "path": "taskfmri/6_plotting/compare_correlations_ds.ipynb", + "sha256": "50f6a24bce3b4bb9b5a7de4e554feb96407cb8540033ad60860b637a131e2733", + "language": "Jupyter", + "lines": 336, + "truncated": false, + "block": 9, + "row": 2551 + }, + { + "path": "taskfmri/6_plotting/compare_correlations_ds_test.py", + "sha256": "954cbdba10b82b284001e93a0a41dc609e16fa2abeb34d846a8a7c2f14d0aa7b", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 7018 + }, + { + "path": "taskfmri/6_plotting/correlate_betas_WB.py", + "sha256": "86f6b20bfdc3ad56654fb6f76e8a8ac24f00f10bd7f7a04d8aff5362b5350e19", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 9380 + }, + { + "path": "taskfmri/6_plotting/ds_WB.py", + "sha256": "f21609eaa1dbbca494344b3fda53e468188b8f5bebff607041a414a613f12b89", + "language": "Python", + "lines": 151, + "truncated": false, + "block": 9, + "row": 9584 + }, + { + "path": "taskfmri/6_plotting/ds_WB_control_models.py", + "sha256": "36a578cdde127e03caebfd1c35c486dd1eab6808e6e64a64c8ea81ad2e990c88", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 9, + "row": 8387 + }, + { + "path": "taskfmri/6_plotting/overview.ipynb", + "sha256": "b458b515977e10edfb171e2aa96b8ef4effd6a7549b18a3428ff555a3d975d23", + "language": "Jupyter", + "lines": 324, + "truncated": false, + "block": 9, + "row": 2543 + }, + { + "path": "taskfmri/6_plotting/plotting_utils.py", + "sha256": "eb1857ed53f7f7fcf1a61c2191dcde65a804c841132449570458636d56f742d3", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6970 + }, + { + "path": "taskfmri/6_plotting/print_p_values.py", + "sha256": "7266a306b4ec0a92ef4d1c7d558589ff211acf95262c22c89ed7f71e96f2f188", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 9053 + }, + { + "path": "taskfmri/6_plotting/reliability_group.py", + "sha256": "499bef8e04ff96c186d0d06b0b424bd6383fc6fc23f3167733ec93a633033c5d", + "language": "Python", + "lines": 112, + "truncated": false, + "block": 9, + "row": 9448 + }, + { + "path": "taskfmri/6_plotting/reliability_individual.py", + "sha256": "d8c2842fa401555d7372fb1a245f13efff2c69854109851d66d2abb6a7ea22c3", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 9, + "row": 10360 + }, + { + "path": "taskfmri/6_plotting/rema.py", + "sha256": "3bcfcefbab3709e58998c53b94b2484f8ae138e6626a492cb5beadf0b5b07ec7", + "language": "Python", + "lines": 149, + "truncated": false, + "block": 9, + "row": 9597 + }, + { + "path": "taskfmri/6_plotting/resample.ipynb", + "sha256": "13723d5f4022579ea1e0e585fdfefa625dacc00738349f8b13187511c4f70fd9", + "language": "Jupyter", + "lines": 110, + "truncated": false, + "block": 9, + "row": 2347 + }, + { + "path": "taskfmri/6_plotting/rsa.ipynb", + "sha256": "bad83a0ed3514846ffc3ba05f074d18d8d3a5389a998b8933ff9ed83fcdcd3f0", + "language": "Jupyter", + "lines": 257, + "truncated": false, + "block": 9, + "row": 2488 + }, + { + "path": "taskfmri/6_plotting/subgroups.ipynb", + "sha256": "f5a98242995df4eabb1bb1cfd2a055885903c0a11b6effd90ea1361bd3585b9e", + "language": "Jupyter", + "lines": 240, + "truncated": false, + "block": 9, + "row": 2483 + }, + { + "path": "taskfmri/6_plotting/within_subjects_distributions.py", + "sha256": "c80d696411dcadb7fc4ba42655b1b8e79f8f531696cbf67dd85faee60c66e415", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 9311 + }, + { + "path": "taskfmri/make_source_data.sh", + "sha256": "ccb2b383ec11117a304102c7cb0eed7eda84da9fde58f2261d77ca1641532c5f", + "language": "Shell", + "lines": 59, + "truncated": false, + "block": 9, + "row": 14304 + }, + { + "path": "taskfmri/submit_chain.sh", + "sha256": "3332eb6f91de3b1b12dbd35c752b3cbffcc81cd33e8bff05a58c5abf6d4c1fb8", + "language": "Shell", + "lines": 21, + "truncated": false, + "block": 9, + "row": 14138 + }, + { + "path": "utilities/backup_data_to_box.py", + "sha256": "845aa1ebf6fd23d9d45b07beeb301aaa416ee7a1ff77aa595f211a5d44b73898", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6612 + }, + { + "path": "utilities/backup_results_to_box.py", + "sha256": "12b77ee1d6f47bcc8b94b06fc8d4314fbed03ed7d3e5e1b12f5d5e50026dbe93", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6909 + }, + { + "path": "utilities/parallel.py", + "sha256": "ddf3f28578ba5411645ab335a71c2890a44490a438ccb70e9e86694179459c8f", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6794 + }, + { + "path": "utilities/report_error.py", + "sha256": "bea4aac3426500881313db94b5ffeb76ead98d552eb334a8a2e48cd662deca72", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7122 + }, + { + "path": "utilities/submit.py", + "sha256": "dd2f87d35ef2181eb822f8fc0c9ed728f88c7faf7bb4b16fabafc74456a2a1a6", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 9, + "row": 10498 + } + ] +} \ No newline at end of file diff --git a/manifests/17/github.com__dkfz-odcf__alignmentandqcworkflows.json b/manifests/17/github.com__dkfz-odcf__alignmentandqcworkflows.json new file mode 100644 index 0000000000000000000000000000000000000000..6c0c1b7bcffa642b062e6dace4d2252246010cfc --- /dev/null +++ b/manifests/17/github.com__dkfz-odcf__alignmentandqcworkflows.json @@ -0,0 +1,885 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/dkfz-odcf/alignmentandqcworkflows", + "url": "https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/", + "host": "github.com", + "commit": "2701b22ad5391ce53747345fff80b87f521cc60f", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "ConfigSummary.py", + "sha256": "e2c2b533eb153408a6363c4b552689572fdf139990a4729fe545fcf19a0fc0c9", + "language": "Python", + "lines": 369, + "truncated": false, + "block": 9, + "row": 11697 + }, + { + "path": "LICENSE", + "sha256": "24550c55a3b584bb350186967133bc4dc0953cb6ad65a4e5706ab52659a873d3", + "language": "License", + "lines": 1054, + "truncated": false, + "block": 9, + "row": 2915 + }, + { + "path": "README.md", + "sha256": "01112c6548eba417fd9e90da5761a2a2d628f21d8bf1eae2d62026c6592f92b9", + "language": "Text", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14505 + }, + { + "path": "resources/analysisTools/bisulfiteWorkflow/WGBS_read_pair_reconstruction.py", + "sha256": "f2809f27de1269db459d8f51bf81f7f170e227b28bfa78b53ea45995e16cda1e", + "language": "Python", + "lines": 189, + "truncated": false, + "block": 9, + "row": 10291 + }, + { + "path": "resources/analysisTools/bisulfiteWorkflow/bcall_2012Nov27.py", + "sha256": "f177e2de3d401d5ca8f94363ec881fe40c656f72682585384986bda4ef382eff", + "language": "Python", + "lines": 386, + "truncated": false, + "block": 9, + "row": 11780 + }, + { + "path": "resources/analysisTools/bisulfiteWorkflow/bcall_tagmentation_2012Nov25.py", + "sha256": "51c3b5fb6efa0c571e3cad33e873765795cd2f379a27052a7dbdf46eaf0a8995", + "language": "Python", + "lines": 431, + "truncated": false, + "block": 9, + "row": 11967 + }, + { + "path": "resources/analysisTools/bisulfiteWorkflow/bconv.py", + "sha256": "b1950105fdc0d428abc848fc76654120ad643836294bd64cb98122d5f629ac31", + "language": "Python", + "lines": 304, + "truncated": false, + "block": 9, + "row": 10975 + }, + { + "path": "resources/analysisTools/bisulfiteWorkflow/bfq.py", + "sha256": "4e52a97644a67d74f9cd0811a2147d86044e904bb70633fd126af170934f9276", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 8776 + }, + { + "path": "resources/analysisTools/bisulfiteWorkflow/bsnp.py", + "sha256": "b5dd013a3e25e7434acf61be4cf014570302dbee91f0dd1807f8351fdd409194", + "language": "Python", + "lines": 157, + "truncated": false, + "block": 9, + "row": 9999 + }, + { + "path": "resources/analysisTools/bisulfiteWorkflow/bspike.py", + "sha256": "9723cdcdc28979aba0f21811ef78f8c377a9784b443a2f48ae750918e9ec1309", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 9, + "row": 9360 + }, + { + "path": "resources/analysisTools/bisulfiteWorkflow/bwaMemSortSlimWithReadConversionForBisulfiteData.sh", + "sha256": "c01915d3ca68c4873f5f4e2eeab80c32e79ece5a0cbcaec41e281e50d90070ca", + "language": "Shell", + "lines": 274, + "truncated": false, + "block": 9, + "row": 14404 + }, + { + "path": "resources/analysisTools/bisulfiteWorkflow/convert_meth_calls_moabs.sh", + "sha256": "a57362228089e41e9d34b9ab073fda0b8b04b47581d61acab77bfa6c2ba65cc0", + "language": "Shell", + "lines": 118, + "truncated": false, + "block": 9, + "row": 14337 + }, + { + "path": "resources/analysisTools/bisulfiteWorkflow/faconv.py", + "sha256": "41c197361e0ed97c08ee35ed081230d5860b6ca7b1e4b9ca71941e2ee5c3a258", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 9, + "row": 8733 + }, + { + "path": "resources/analysisTools/bisulfiteWorkflow/fapos.py", + "sha256": "de5ceeca240ffcddec89ba673f6f47ff2b3c0d2d4cddd376d22ca5878b405220", + "language": "Python", + "lines": 151, + "truncated": false, + "block": 9, + "row": 9612 + }, + { + "path": "resources/analysisTools/bisulfiteWorkflow/fqconv.py", + "sha256": "05b9feef65bb7060028e258dcc965feff247ba6fddf1095d1956b0594bfddb57", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 9, + "row": 9775 + }, + { + "path": "resources/analysisTools/bisulfiteWorkflow/fqsplit.py", + "sha256": "7c251508512c20b095e8fa9052064084d2911e755eec1ca9c10334158b920846", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 9, + "row": 9018 + }, + { + "path": "resources/analysisTools/bisulfiteWorkflow/methylCtools_methylation_calling.sh", + "sha256": "5afaff4f74503efc2ff1b2a9d4e5a95163bcbd779490ff51546daf667be2be37", + "language": "Shell", + "lines": 112, + "truncated": false, + "block": 9, + "row": 14333 + }, + { + "path": "resources/analysisTools/bisulfiteWorkflow/methylCtools_methylation_calling_meta.sh", + "sha256": "6b8aeff570768769c079b7513ababf8d2ccea5524c1db96a21540bf7488817a7", + "language": "Shell", + "lines": 117, + "truncated": false, + "block": 9, + "row": 14334 + }, + { + "path": "resources/analysisTools/exomePipeline/createOnTargetCoveragePlot.sh", + "sha256": "be585179896af194390657e755b44852cc67fcc610fb35e5a9b008358eedaef1", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 9, + "row": 14004 + }, + { + "path": "resources/analysisTools/exomePipeline/samtoolsOnTargetCoverage.sh", + "sha256": "18a2ad1ff31c8a128280f58528358327aa2c6be921ce24b7e5ac4b3b54ae4d7c", + "language": "Shell", + "lines": 18, + "truncated": false, + "block": 9, + "row": 14109 + }, + { + "path": "resources/analysisTools/exomePipeline/targetCoverageDistributionPlot.r", + "sha256": "9efe94ad4b3df837bfc898b587c5cf57ef7bf2afa37fa150a5379a7407e77943", + "language": "R", + "lines": 25, + "truncated": false, + "block": 9, + "row": 12826 + }, + { + "path": "resources/analysisTools/exomePipeline/targetExtractCoverageSlim.sh", + "sha256": "55bd7526994c383aa102e366d079eca69275475a25b87cbb2f1683a0c6110503", + "language": "Shell", + "lines": 115, + "truncated": false, + "block": 9, + "row": 14368 + }, + { + "path": "resources/analysisTools/exomePipeline/targetcov.pl", + "sha256": "509005c9eee3d2394859024e3a2128b35951c3c38d2e0dc859fb5e0ced2ee2a9", + "language": "Perl", + "lines": 110, + "truncated": false, + "block": 9, + "row": 6055 + }, + { + "path": "resources/analysisTools/qcPipeline/Illumina2PhredScore.pl", + "sha256": "97d77b83b6eeefeeddc4a7249ad5dbe23b81e227d45b9440edf91edab2d9d876", + "language": "Perl", + "lines": 81, + "truncated": false, + "block": 9, + "row": 6045 + }, + { + "path": "resources/analysisTools/qcPipeline/PhredOrIllumina.pl", + "sha256": "9d7e512f7879c859dca1b74ef1645a222dd5608256fa3488c93570b91be41d4e", + "language": "Perl", + "lines": 37, + "truncated": false, + "block": 9, + "row": 6037 + }, + { + "path": "resources/analysisTools/qcPipeline/addMappability.py", + "sha256": "b970f8e47be6d6b04c65fec4fb36a823297be46e999c7710eaf2c2d913fe4394", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 9, + "row": 8433 + }, + { + "path": "resources/analysisTools/qcPipeline/annotate_vcf.pl", + "sha256": "600ece12f663f493ff7f1edcc2a9323a68dd6106918c8b259d565c5e44d7f448", + "language": "Perl", + "lines": 601, + "truncated": false, + "block": 9, + "row": 6077 + }, + { + "path": "resources/analysisTools/qcPipeline/bashLib.sh", + "sha256": "79f37fae7c3a9e5d5091427c3a0924f2affe028772519bef4173fa247de3a594", + "language": "Shell", + "lines": 139, + "truncated": false, + "block": 9, + "row": 14308 + }, + { + "path": "resources/analysisTools/qcPipeline/bsnp.py", + "sha256": "84a269f1b3e2821a23eba2c63f022aca83dc03e5d516cddab9533b04ecc25a60", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 9, + "row": 10380 + }, + { + "path": "resources/analysisTools/qcPipeline/bwaCommonAlignmentSettings.sh", + "sha256": "ecd246685dba12e803135cd46c1cfa07786c7fc2dc0cb8def4ef78f55b255d60", + "language": "Shell", + "lines": 55, + "truncated": false, + "block": 9, + "row": 14213 + }, + { + "path": "resources/analysisTools/qcPipeline/bwaMemSortSlim.sh", + "sha256": "5c9d186578f7ba7dd06f391960b4f359e9e1582a445cc897f7a340309316f4d9", + "language": "Shell", + "lines": 276, + "truncated": false, + "block": 9, + "row": 14405 + }, + { + "path": "resources/analysisTools/qcPipeline/checkFastQC.sh", + "sha256": "e4b96e59f6eaac884c0eecb20f6788c7725fc50445e82d95fd42fd877c568caf", + "language": "Shell", + "lines": 37, + "truncated": false, + "block": 9, + "row": 14153 + }, + { + "path": "resources/analysisTools/qcPipeline/chrom_diff.r", + "sha256": "2df406f8e75d67caff358d93d6788a03c9607db3e7a2345e408ae27bda511764", + "language": "R", + "lines": 43, + "truncated": false, + "block": 9, + "row": 12888 + }, + { + "path": "resources/analysisTools/qcPipeline/cleanupScript.sh", + "sha256": "9eed03487a04becb694d8ee6f1e9b1eb975254b06f96642ec51254782107ad6d", + "language": "Shell", + "lines": 5, + "truncated": false, + "block": 9, + "row": 13911 + }, + { + "path": "resources/analysisTools/qcPipeline/cnvMergeFilter.sh", + "sha256": "5f10f939124c30e80a617b1b11d8382e91f338bbdda9ab6c632d5dbae244f0d6", + "language": "Shell", + "lines": 23, + "truncated": false, + "block": 9, + "row": 14084 + }, + { + "path": "resources/analysisTools/qcPipeline/convertTabToJson.py", + "sha256": "dc395c93390e8bc9366442f8be2227fa1ec880d9e9e92c1a7222cd344afddefa", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7560 + }, + { + "path": "resources/analysisTools/qcPipeline/correctGCBias.R", + "sha256": "d8eb5d47c5d839ef7b33fd87788501ee0e7692f0affce2e50263d13adcb41385", + "language": "R", + "lines": 337, + "truncated": false, + "block": 9, + "row": 13726 + }, + { + "path": "resources/analysisTools/qcPipeline/correctGCBias_functions.R", + "sha256": "78fe99903333bd396604d23779a37e81c0b239877c8deded3fff8bb83e8438bf", + "language": "R", + "lines": 251, + "truncated": false, + "block": 9, + "row": 13574 + }, + { + "path": "resources/analysisTools/qcPipeline/correct_gc_bias.sh", + "sha256": "56657c7297213050dd68d34b5a616d91ef25726e0fc57592a62ab9674713d4d6", + "language": "Shell", + "lines": 54, + "truncated": false, + "block": 9, + "row": 14224 + }, + { + "path": "resources/analysisTools/qcPipeline/coveragePlot.R", + "sha256": "9384a3361302e101d1585cd0f3fb17a34fa91b187f0e50fbf6d143f123ffbb82", + "language": "R", + "lines": 209, + "truncated": false, + "block": 9, + "row": 13503 + }, + { + "path": "resources/analysisTools/qcPipeline/environments/conda.sh", + "sha256": "6c41c82e36fbe43988b3394d078f7f72605baead9b7dad244de91ed670ca5f47", + "language": "Shell", + "lines": 34, + "truncated": false, + "block": 9, + "row": 14168 + }, + { + "path": "resources/analysisTools/qcPipeline/environments/tbi-lsf-cluster.sh", + "sha256": "d12b903def7890ec881d07f4e6c242351332905e66c0d879c0819f876b5ee001", + "language": "Shell", + "lines": 160, + "truncated": false, + "block": 9, + "row": 14354 + }, + { + "path": "resources/analysisTools/qcPipeline/environments/tbi-pbs-cluster.sh", + "sha256": "d82ca1c4c9d71dda834790f4a161181a8cb688cbf9d2c07952c177d1f41ec663", + "language": "Shell", + "lines": 51, + "truncated": false, + "block": 9, + "row": 14269 + }, + { + "path": "resources/analysisTools/qcPipeline/failedReadFilter.pl", + "sha256": "baa2db21ba9fcc5290fa5c6eb40567072eb5c76914ebb093bacdfb8c128e1fd5", + "language": "Perl", + "lines": 55, + "truncated": false, + "block": 9, + "row": 6042 + }, + { + "path": "resources/analysisTools/qcPipeline/fakeDupmarkMetrics.pl", + "sha256": "a2272129603d32a7e2b2756c854354df5a7b39c5a0c0086d83202fd1165c7878", + "language": "Perl", + "lines": 87, + "truncated": false, + "block": 9, + "row": 6057 + }, + { + "path": "resources/analysisTools/qcPipeline/filter_readbins.pl", + "sha256": "a8a4ea798a3b133353ff4e884ec15703e41cce422d66d0b351de4b35b42d9af8", + "language": "Perl", + "lines": 87, + "truncated": false, + "block": 9, + "row": 6043 + }, + { + "path": "resources/analysisTools/qcPipeline/flags_isizes_PEaberrations.pl", + "sha256": "472ac25b4eb75982db3aa9bd5b70cb845435b1e19b2087bc51d854856a28edd4", + "language": "Perl", + "lines": 343, + "truncated": false, + "block": 9, + "row": 6070 + }, + { + "path": "resources/analysisTools/qcPipeline/gccorrection_python_modules/Options.py", + "sha256": "01c641f30aa75963d72507187dfd6ec9e476f8e14bfc27718035e03cbad7b676", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 7057 + }, + { + "path": "resources/analysisTools/qcPipeline/gccorrection_python_modules/Tabfile.py", + "sha256": "2776b3a14d0878527c3dee7d60fe497da7f300d51e4c29725708e3e9cf538c00", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 7535 + }, + { + "path": "resources/analysisTools/qcPipeline/gccorrection_python_modules/__init__.py", + "sha256": "362b51bf5ae5601a17408a85a03f9b9dbc515ac437e942738d974d9dc45a5d83", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6089 + }, + { + "path": "resources/analysisTools/qcPipeline/genomeCoverage.sh", + "sha256": "fe4e23fcaa2213b29a61c5fa2a44076f4628962a823a2ef31de3d2e08dc0b9a1", + "language": "Shell", + "lines": 19, + "truncated": false, + "block": 9, + "row": 14091 + }, + { + "path": "resources/analysisTools/qcPipeline/genomeCoveragePlots.sh", + "sha256": "cc2763503f3765e6ddb46792cf742c5a648d2020d107502cbeba20144fbf1929", + "language": "Shell", + "lines": 28, + "truncated": false, + "block": 9, + "row": 14178 + }, + { + "path": "resources/analysisTools/qcPipeline/getSex.R", + "sha256": "485b29a426a5dee89a55678b911438f408dc85c7f4a7ac992065be558aa9f04b", + "language": "R", + "lines": 88, + "truncated": false, + "block": 9, + "row": 13118 + }, + { + "path": "resources/analysisTools/qcPipeline/getopt.R", + "sha256": "1bca473ed3ae460d943ae053fdbcc0cda3150e28cab831a4c4c411b16061d8cb", + "language": "R", + "lines": 74, + "truncated": false, + "block": 9, + "row": 13018 + }, + { + "path": "resources/analysisTools/qcPipeline/groupedGenomeCoverages.pl", + "sha256": "bc9bcba67d8353b49a5af4a435e4694eb5fc1a44c6c622815fc42a2ed422de4d", + "language": "Perl", + "lines": 460, + "truncated": false, + "block": 9, + "row": 6078 + }, + { + "path": "resources/analysisTools/qcPipeline/insertsizePlot.R", + "sha256": "9ed3a7570b943c7b7f7df631cebf93c516cbea506fa0449431a76caf215c54a5", + "language": "R", + "lines": 33, + "truncated": false, + "block": 9, + "row": 12867 + }, + { + "path": "resources/analysisTools/qcPipeline/mergeAndMarkOrRemoveDuplicatesSlim.sh", + "sha256": "d2c44445fe6373dd6a965f0bb7f6022e9002b6d826886c1fbfcfa12df20d09a6", + "language": "Shell", + "lines": 397, + "truncated": false, + "block": 9, + "row": 14415 + }, + { + "path": "resources/analysisTools/qcPipeline/merge_and_filter_cnv.py", + "sha256": "4c20d1439e6a4d65c53111f0d114442387316b616c106cdc353ec83b6b96e955", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8300 + }, + { + "path": "resources/analysisTools/qcPipeline/missingReadGroups.pl", + "sha256": "7de3d9da517126b7fa747f0d3282ff48e1520f5b0cdbcc06b5188709a92b3ea2", + "language": "Perl", + "lines": 73, + "truncated": false, + "block": 9, + "row": 6052 + }, + { + "path": "resources/analysisTools/qcPipeline/picardCollectMetrics.sh", + "sha256": "5ec07a9eb258be8199e27f915ab3a9a66d1b47836f51a2243a634a6f05860c8e", + "language": "Shell", + "lines": 17, + "truncated": false, + "block": 9, + "row": 14032 + }, + { + "path": "resources/analysisTools/qcPipeline/prepare-trimmomatic-adapters.py", + "sha256": "494d141324253a7f01a1d4c4f0c404c0e02ef28303c26d9435fe47b7fa6fe205", + "language": "Python", + "lines": 506, + "truncated": false, + "block": 9, + "row": 11851 + }, + { + "path": "resources/analysisTools/qcPipeline/qcJson.pl", + "sha256": "0b4d0d7f3f04d78fd7f1ba806d5bcec485599ace07e3d5f1c6b895977cb5b002", + "language": "Perl", + "lines": 640, + "truncated": false, + "block": 9, + "row": 6079 + }, + { + "path": "resources/analysisTools/qcPipeline/qq.R", + "sha256": "ad2a0293c24b81fac206ed7c39071d0be0b3474099e1a958e8c1c38e608d7120", + "language": "R", + "lines": 135, + "truncated": false, + "block": 9, + "row": 13270 + }, + { + "path": "resources/analysisTools/qcPipeline/vcfAnno.sh", + "sha256": "2de8aec4ee4dea23b914b607807223fa63e0ac9a009936fee69e0c3c92376320", + "language": "Shell", + "lines": 67, + "truncated": false, + "block": 9, + "row": 14226 + }, + { + "path": "resources/analysisTools/qcPipeline/workflowLib.sh", + "sha256": "733832213527a99484c585bf66158cb09f4f9214873958f6b71ab1410b950754", + "language": "Shell", + "lines": 339, + "truncated": false, + "block": 9, + "row": 14397 + }, + { + "path": "resources/analysisTools/qcPipeline/writeQCsummary.pl", + "sha256": "cc45ba08dd32d17cdb857de7172d9e49c657b8617f2a4f3f8ec4bcf5f829a49f", + "language": "Perl", + "lines": 309, + "truncated": false, + "block": 9, + "row": 6073 + }, + { + "path": "resources/analysisTools/qcPipelineTools/compile_coverageQcD.sh", + "sha256": "d0513710ff964aa4704c05c90b0c5126584dfb9455eaf5dbe4f378cc3711f427", + "language": "Shell", + "lines": 89, + "truncated": false, + "block": 9, + "row": 14291 + }, + { + "path": "resources/analysisTools/qcPipelineTools/compile_genomeCoverageD.sh", + "sha256": "de6262e144022c9cae2132cc9d8e4187fb9592490df145d7fa7d112514d8696a", + "language": "Shell", + "lines": 89, + "truncated": false, + "block": 9, + "row": 14292 + }, + { + "path": "resources/tests/analysisTools/qcPipeline/bashLib.sh", + "sha256": "f00f02083cf79a37c1858a1bb81a593bd2e3781fa5b174fa13b5e563b4cd09b1", + "language": "Shell", + "lines": 30, + "truncated": false, + "block": 9, + "row": 14115 + }, + { + "path": "resources/tests/analysisTools/qcPipeline/workflowLib.sh", + "sha256": "f4cc3ad55c036e9f55cae4afb262c1c61954341ca1ad761170c93825a132bfdd", + "language": "Shell", + "lines": 181, + "truncated": false, + "block": 9, + "row": 14355 + }, + { + "path": "resources/tests/runTests.sh", + "sha256": "685d25f6f9c65b52fea56aec2a9eda38be588ba0cdcecc4cb83e416fec6c15f5", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14086 + }, + { + "path": "revertAndUnstageCompiledFiles.sh", + "sha256": "bd13f176158beee1811614624ccd3b2a214e7300db9c1118f146b6a1d8cf1783", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 9, + "row": 14005 + }, + { + "path": "src/de/dkfz/b080/co/AlignmentAndQCWorkflowsPlugin.java", + "sha256": "ac8e5e73c1ef84a91f9367dfb5c8b008ee777119427acdc0b44ac8024c7bca3e", + "language": "Java", + "lines": 24, + "truncated": false, + "block": 9, + "row": 2001 + }, + { + "path": "src/de/dkfz/b080/co/files/AlignedSequenceFile.java", + "sha256": "8aee66f15a6d9d4611bc4e3236a325d20fa7a46880549b8fabf17c800aa29b56", + "language": "Java", + "lines": 18, + "truncated": false, + "block": 9, + "row": 1996 + }, + { + "path": "src/de/dkfz/b080/co/files/AlignedSequenceFileGroup.java", + "sha256": "a1166b3184bc8688e1c3b46fc00d26bb3701242b503f46fddd46dae9c97530ec", + "language": "Java", + "lines": 51, + "truncated": false, + "block": 9, + "row": 2006 + }, + { + "path": "src/de/dkfz/b080/co/files/BamFile.java", + "sha256": "d61b6469c8855b0979426224338a8ebfbe5a01b5afba4bdb5deada5dde65be14", + "language": "Java", + "lines": 452, + "truncated": false, + "block": 9, + "row": 2013 + }, + { + "path": "src/de/dkfz/b080/co/files/BamIndexFile.java", + "sha256": "6e03aca385600f0126b95982e4750b0a42d898c2f9da5b8fbd88cadb44bbff3d", + "language": "Java", + "lines": 18, + "truncated": false, + "block": 9, + "row": 1985 + }, + { + "path": "src/de/dkfz/b080/co/files/BamMetricsAlignmentSummaryFile.java", + "sha256": "1b188e3df930a8a9098de998b339c7a35ba33036a8341601efbb54ca932e18e5", + "language": "Java", + "lines": 15, + "truncated": false, + "block": 9, + "row": 1994 + }, + { + "path": "src/de/dkfz/b080/co/files/BamMetricsCollectionFileGroup.java", + "sha256": "3287ce2bce8761c9aec76c502d333da9d8c8500cac4ea87bd4065713e2a49f90", + "language": "Java", + "lines": 19, + "truncated": false, + "block": 9, + "row": 1992 + }, + { + "path": "src/de/dkfz/b080/co/files/BamMetricsFile.java", + "sha256": "178fcc7b3bc87788fe1057316c7ae79a25921441a818d2d645d1ee9638af966f", + "language": "Java", + "lines": 18, + "truncated": false, + "block": 9, + "row": 1987 + }, + { + "path": "src/de/dkfz/b080/co/files/ChromosomeDiffFileGroup.java", + "sha256": "a75b2aea84b0194e7a01fea1453ad329c52cfd4f38757153b470a6ae37793f34", + "language": "Java", + "lines": 53, + "truncated": false, + "block": 9, + "row": 2004 + }, + { + "path": "src/de/dkfz/b080/co/files/ChromosomeDiffPlotFile.java", + "sha256": "50576a75f97348e55a0cd71a7c3ed2cf5482d7e0b02411997774b65e8e0a5c88", + "language": "Java", + "lines": 17, + "truncated": false, + "block": 9, + "row": 1991 + }, + { + "path": "src/de/dkfz/b080/co/files/ChromosomeDiffTextFile.java", + "sha256": "61d515906c5051e9587d66cbe5d3ae4eea638c6a7f8bb3ad4ee101a0e4724f37", + "language": "Java", + "lines": 20, + "truncated": false, + "block": 9, + "row": 1997 + }, + { + "path": "src/de/dkfz/b080/co/files/CoverageTextFile.java", + "sha256": "d54cba0fb29c72cbe10fb11143c195b06e646eafe749a623fbf43be2709af2a9", + "language": "Java", + "lines": 59, + "truncated": false, + "block": 9, + "row": 2005 + }, + { + "path": "src/de/dkfz/b080/co/files/CoverageTextFileGroup.java", + "sha256": "f63a6d34505a4551d8ff36fb939b3e3fec66de9302a9adf7762f49737a026a39", + "language": "Java", + "lines": 57, + "truncated": false, + "block": 9, + "row": 2007 + }, + { + "path": "src/de/dkfz/b080/co/files/FastqcFile.java", + "sha256": "9ff9732b3ffd158ccd5fc3c1672560ac1571a6e296dd3cd5d76fe83252e1070a", + "language": "Java", + "lines": 21, + "truncated": false, + "block": 9, + "row": 1998 + }, + { + "path": "src/de/dkfz/b080/co/files/FastqcGroup.java", + "sha256": "79a74a7d407edf9d4aee5c4f542700f61fde9992f184c90f82302be6486a9c2e", + "language": "Java", + "lines": 22, + "truncated": false, + "block": 9, + "row": 1993 + }, + { + "path": "src/de/dkfz/b080/co/files/FlagstatsFile.java", + "sha256": "46002fd235b88818744127c038ddb4a3cd9fea124c225af25d598ac0fee0073b", + "language": "Java", + "lines": 17, + "truncated": false, + "block": 9, + "row": 1986 + }, + { + "path": "src/de/dkfz/b080/co/files/GenomeCoveragePlotFile.java", + "sha256": "3f5b2b5246346dfef9de88e23e0b8ce2045e6776e4ea1d78cac4faa72c227521", + "language": "Java", + "lines": 27, + "truncated": false, + "block": 9, + "row": 1999 + }, + { + "path": "src/de/dkfz/b080/co/files/GenomeCoveragePlotFileGroup.java", + "sha256": "221065e16cc279412edc4cbfc0528c4d068b19791bc5d00655f236a86e496899", + "language": "Java", + "lines": 20, + "truncated": false, + "block": 9, + "row": 1995 + }, + { + "path": "src/de/dkfz/b080/co/files/InsertSizesFileGroup.java", + "sha256": "6ff4abbbcdfcb9cf781d3185befbc8a2d094e3dd3d5e273b63faf7fb5fe225c9", + "language": "Java", + "lines": 53, + "truncated": false, + "block": 9, + "row": 2003 + }, + { + "path": "src/de/dkfz/b080/co/files/InsertSizesPlotFile.java", + "sha256": "dd649b383400da6867687198a13d3a6267915a0ebec9287ef0604f2123e8a329", + "language": "Java", + "lines": 18, + "truncated": false, + "block": 9, + "row": 1990 + }, + { + "path": "src/de/dkfz/b080/co/files/InsertSizesTextFile.java", + "sha256": "3e3bab5f8be64b3043e29c21b9ac0d1993fd4cde096fa63084de3d47b9817679", + "language": "Java", + "lines": 18, + "truncated": false, + "block": 9, + "row": 1989 + }, + { + "path": "src/de/dkfz/b080/co/files/InsertSizesValueFile.java", + "sha256": "06e29a82494b1ee48d6987f86b1407945cc96c674dd75e863f659c6b70919a93", + "language": "Java", + "lines": 16, + "truncated": false, + "block": 9, + "row": 1988 + }, + { + "path": "src/de/dkfz/b080/co/files/LaneFile.java", + "sha256": "a0093e0d4a273d2cfee6974af62cad19d734a08ebc4562698efd76a3dc12ef19", + "language": "Java", + "lines": 138, + "truncated": false, + "block": 9, + "row": 2011 + }, + { + "path": "src/de/dkfz/b080/co/files/LaneFileGroup.java", + "sha256": "4b1859d757cb8361eaea5bcfa2977053db4dce9b0582976d1551b6fb213d451c", + "language": "Java", + "lines": 122, + "truncated": false, + "block": 9, + "row": 2010 + }, + { + "path": "src/de/dkfz/b080/co/files/QCSummaryFile.java", + "sha256": "9457bd05520ca11ba95cb5bfbb6338800392793223b67e4e5cd4a628f5f36295", + "language": "Java", + "lines": 38, + "truncated": false, + "block": 9, + "row": 2002 + } + ] +} \ No newline at end of file diff --git a/manifests/18/zenodo__19260114.json b/manifests/18/zenodo__19260114.json new file mode 100644 index 0000000000000000000000000000000000000000..a3c22a5e006bd3ffab39844d06a2b1d19af32f5d --- /dev/null +++ b/manifests/18/zenodo__19260114.json @@ -0,0 +1,21 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19260114", + "url": "10.5281/zenodo.19260114", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "AstroCircuit_Functions.jl", + "sha256": "b295a62667f269689c1a50d5e39fda12b593d56128b8f7c0f2caac24e23aab7b", + "language": "Julia", + "lines": 199, + "truncated": false, + "block": 9, + "row": 2157 + } + ] +} \ No newline at end of file diff --git a/manifests/1a/github.com__cavelandiam__cnn-tep-detection.json b/manifests/1a/github.com__cavelandiam__cnn-tep-detection.json new file mode 100644 index 0000000000000000000000000000000000000000..a96dd10088c951c38197b91c55850e548b303a3d --- /dev/null +++ b/manifests/1a/github.com__cavelandiam__cnn-tep-detection.json @@ -0,0 +1,165 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/cavelandiam/cnn-tep-detection", + "url": "https://github.com/cavelandiam/cnn-tep-detection", + "host": "github.com", + "commit": "6d4810d91aaca45db6cce713c951c839146b2eff", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "c37ab2015aa117ea6eb5eed4168c235af09a55c08aaef6e3c852b232c7e2c8bd", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2841 + }, + { + "path": "README.MD", + "sha256": "d50b9fe597177e0758f6577e5900a6c88b04d721feb86b5f81dd146821145cd9", + "language": "Text", + "lines": 155, + "truncated": false, + "block": 9, + "row": 14666 + }, + { + "path": "main.py", + "sha256": "f0591a4cd61a9ce22bc0fc74cb59ff5bceaa2e477e4c624643b21c94d72c91ab", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8168 + }, + { + "path": "scripts/preprocess_rsna.py", + "sha256": "f7fa2d751c293ad9c8e9b4e9cdb16c113b4063da01a383f76848d7a9603a43a7", + "language": "Python", + "lines": 395, + "truncated": false, + "block": 9, + "row": 11268 + }, + { + "path": "scripts/s1_improved_3dcnn_tep.py", + "sha256": "acf6207ad0d188ac188962b6f7df5356a47452eba9902fbf8b03fa29bfaaf9d0", + "language": "Python", + "lines": 1034, + "truncated": false, + "block": 9, + "row": 12439 + }, + { + "path": "scripts/s1_improved_3dcnn_tep_copy1.py", + "sha256": "f9c83790cd92cd540618391dfd9b57a9ffd6721b840481b59162e90ca7d9ab00", + "language": "Python", + "lines": 954, + "truncated": false, + "block": 9, + "row": 12404 + }, + { + "path": "scripts/s2_load_images_hucsr.py", + "sha256": "50ee4074182e9c489cf972fa86f1753e8cca11cd8dd40bdd6af3104e0917cbb0", + "language": "Python", + "lines": 596, + "truncated": false, + "block": 9, + "row": 11858 + }, + { + "path": "scripts/s3_fine_tunning.py", + "sha256": "163a7d0b8828ae8f3591a1806c174eb40f6751bdc1259654df6c926e2d75fdac", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 9, + "row": 10006 + }, + { + "path": "scripts/s4_inference_tep.py", + "sha256": "38866cf87f560c4b21f254926848ae715d81e04e08331949a2375dec78e15f00", + "language": "Python", + "lines": 214, + "truncated": false, + "block": 9, + "row": 10410 + }, + { + "path": "scripts/s4_inference_tep_v2.py", + "sha256": "270f60f81aa4eaf30b9cb5e82fcb95a13fc8786edced0c0b51ed99f2742ab3dd", + "language": "Python", + "lines": 269, + "truncated": false, + "block": 9, + "row": 10716 + }, + { + "path": "scripts/steps/s1_preprocess_data_hucsr.py", + "sha256": "19c3822a216dd24f0c22ed9f1645b806e718e51c87e0dd8acf0f0e658fba7157", + "language": "Python", + "lines": 594, + "truncated": false, + "block": 9, + "row": 11849 + }, + { + "path": "scripts/steps/s2_create_model.py", + "sha256": "276133c0a48d9b63445ace272a1d040e1f905c8e8b4d980ce81c982aef28f0f0", + "language": "Python", + "lines": 403, + "truncated": false, + "block": 9, + "row": 11692 + }, + { + "path": "scripts/steps/s3_inference.py", + "sha256": "75609f0f81ad1fe94b9561d23c62b1ea26fd69fb23c67cd82ebb06e3d976a532", + "language": "Python", + "lines": 330, + "truncated": false, + "block": 9, + "row": 11002 + }, + { + "path": "test.py", + "sha256": "7c960aac6d0c000e83e229d4a1e41c94155c0d472eea419b052a3894bc79f38e", + "language": "Python", + "lines": 212, + "truncated": false, + "block": 9, + "row": 10462 + }, + { + "path": "utils/config.py", + "sha256": "8138ec0ebacbd48b20b7af4ee243d266f0ad0ca33c7a97a3ba8b216a5b394c33", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 8287 + }, + { + "path": "utils/logger.py", + "sha256": "8d65897d2de3cab399dd32f2ee5c83b9885fa1e417f2793225479f5b67162b0e", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 9, + "row": 9831 + }, + { + "path": "utils/visualization.py", + "sha256": "25385e24d4b1f31e5a9ce264f907fb15896683c0ab85dd9292497fee2da48d64", + "language": "Python", + "lines": 472, + "truncated": false, + "block": 9, + "row": 11564 + } + ] +} \ No newline at end of file diff --git a/manifests/1c/zenodo__10566716.json b/manifests/1c/zenodo__10566716.json new file mode 100644 index 0000000000000000000000000000000000000000..688984234ebbdccb1e44c192e94b03379d80efea --- /dev/null +++ b/manifests/1c/zenodo__10566716.json @@ -0,0 +1,264 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:10566716", + "url": "https://zenodo.org/records/10566716", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "981e79a12f74c821c3b7798b1784faf434d55d6c25221626cceb5d506faa8e88", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2824 + }, + { + "path": "README.md", + "sha256": "a7373012c98b3f4960eb4f6a56310d5f5b337059aa7d22d77d0ba197766f23d0", + "language": "Text", + "lines": 119, + "truncated": false, + "block": 9, + "row": 14627 + }, + { + "path": "docs/conf.py", + "sha256": "616e099522a57b01b306bcc9588a9cfacb58ec9da75f42a2de8707ace4300826", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 8353 + }, + { + "path": "examples/kartograf_example.ipynb", + "sha256": "0438874f8cbe648f2dffc7ee0e82a32fb1a79d4774e1d052e41542ffe685ec4c", + "language": "Jupyter", + "lines": 143, + "truncated": false, + "block": 9, + "row": 2335 + }, + { + "path": "src/kartograf/__init__.py", + "sha256": "44df6cada3beae15f1c15ed3246dc5f2e07396e7c573d5feda4d6925c87a3db1", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6699 + }, + { + "path": "src/kartograf/atom_aligner.py", + "sha256": "fd78cf06e1e5ab4e13ec8ef1e56c604a1c64f910298549ca00d3ed97aca57da6", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 9, + "row": 8193 + }, + { + "path": "src/kartograf/atom_mapper.py", + "sha256": "80849a98abc43e960accba41094e39eb4ead8abeb2c9bcc3dc26101d6f8bbb8f", + "language": "Python", + "lines": 882, + "truncated": false, + "block": 9, + "row": 12235 + }, + { + "path": "src/kartograf/atom_mapping_scorer.py", + "sha256": "32a409e15b36a4f794c9fe24dd718c48ef535c4b125724ea4402fb15c88e400d", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 7790 + }, + { + "path": "src/kartograf/filters/__init__.py", + "sha256": "eeaa4b7c205cbebb314617b4f50c7be3b5dc5c29ac978096e99be522ebcd54e9", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 9, + "row": 6454 + }, + { + "path": "src/kartograf/filters/element_change.py", + "sha256": "0a0b5645b33f268c91a5d69c37963e2e470affa9e3767651e42faf2e23d0fe07", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7600 + }, + { + "path": "src/kartograf/filters/ring_changes.py", + "sha256": "1b90ab7e96a2efc456a53962fe07952a4c6d3baacbed313446fa92daefb996e7", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 9, + "row": 8650 + }, + { + "path": "src/kartograf/mapping_metrics/__init__.py", + "sha256": "f77dd83fe69679f990867caf8e3d501530cc2f505dd77b901ae5a69f6d0b37a2", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6582 + }, + { + "path": "src/kartograf/mapping_metrics/_abstract_scorer.py", + "sha256": "e6a5e73c24739adfc8535899ec765c385f46e3369868bdeeff02028266d4583a", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 9, + "row": 7210 + }, + { + "path": "src/kartograf/mapping_metrics/metric_mapping_rmsd.py", + "sha256": "e38cc7e68d53278b9023757fa840b6b9f0e366e80eb28a1d1a72ba7d351c3e96", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 8527 + }, + { + "path": "src/kartograf/mapping_metrics/metric_shape_difference.py", + "sha256": "bc56f6d5807685f2f67603b253ef925bf8b7e8020625c1f3b40e586dd81bd9d6", + "language": "Python", + "lines": 284, + "truncated": false, + "block": 9, + "row": 10632 + }, + { + "path": "src/kartograf/mapping_metrics/metric_volume_ratio.py", + "sha256": "64b98652f18eef60cba90b422946a2adb38b1976014d242b028ac8a116a08826", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 8792 + }, + { + "path": "src/kartograf/mapping_metrics/metrics_mapping_comparisons.py", + "sha256": "1c988644435884664f41c2eddb85ec3ea0fc4a37de5f45bd2c930fc284ebec4d", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7367 + }, + { + "path": "src/kartograf/tests/__init__.py", + "sha256": "5cc4bde3f27ff8081249f2838803c3679a06dc0e2262e5a461838a8d84c8c7c5", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 9, + "row": 6379 + }, + { + "path": "src/kartograf/tests/conftest.py", + "sha256": "b88dbadddcc6d0deb628825c261a03c972d9cb6bf491c4c7eda2e3322329e777", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 8312 + }, + { + "path": "src/kartograf/tests/test_atom_align.py", + "sha256": "a4b0b2c7f1858a2b3d2b65e312702f138c3a39bd9c3fed36912fc6ca7fe13e8c", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6773 + }, + { + "path": "src/kartograf/tests/test_atom_mapper.py", + "sha256": "c7fca251b1e0a62e52509064f987771b95eac42a73101600eb325969c94bde8f", + "language": "Python", + "lines": 273, + "truncated": false, + "block": 9, + "row": 10523 + }, + { + "path": "src/kartograf/tests/test_atom_mapping_comparer.py", + "sha256": "0b80cc4b454004f3b6bf7af3a8e14a52f480090aa882c10480927b092c972b85", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 9, + "row": 8702 + }, + { + "path": "src/kartograf/tests/test_atom_mapping_scorer.py", + "sha256": "67840be4a97483719eb5501e364e6a74b24c8e370c150c3723d14cebf0ce862d", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 8880 + }, + { + "path": "src/kartograf/tests/test_element_filters.py", + "sha256": "bfc3035b7df2602b095a346dba6966f8ec602c8481a2086d7929d4ed8ef69ed0", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7276 + }, + { + "path": "src/kartograf/tests/test_ring_filters.py", + "sha256": "cce90fd1d878f491aa36c36ce5b7058caf6a96725a5ae1060a93a9af817d1d3e", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 9, + "row": 8076 + }, + { + "path": "src/kartograf/tests/test_utils_vis.py", + "sha256": "43d6bcbf1440e1f8ac03c3beb1ac71ffe81c5c089cbda6ae126a8583a187afb2", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6992 + }, + { + "path": "src/kartograf/utils/mapping_visualization_widget.py", + "sha256": "b929e2c3e7c174e27f01b070581eeb28975c17b8db9b9a3e43071dcb39a500e6", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 9, + "row": 8489 + }, + { + "path": "src/kartograf/utils/optional_imports.py", + "sha256": "5c79c0590c86fe54724c3fc01ff7cb50a460afeadf7d5734ff695992ec7eec08", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7428 + } + ] +} \ No newline at end of file diff --git a/manifests/1c/zenodo__10849928.json b/manifests/1c/zenodo__10849928.json new file mode 100644 index 0000000000000000000000000000000000000000..11014e4e0452b826511f647a7c86026acfa296e9 --- /dev/null +++ b/manifests/1c/zenodo__10849928.json @@ -0,0 +1,390 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:10849928", + "url": "https://zenodo.org/records/10849928", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "b06216b25962856729369804671b10ac7daed2237597f285abc540c363c19da2", + "language": "License", + "lines": 7, + "truncated": false, + "block": 9, + "row": 2857 + }, + { + "path": "README.md", + "sha256": "e19b3e785e9cd9ac5f15d800ed60a64def2f6b155cc22fa26d668e6829e8f46d", + "language": "Text", + "lines": 133, + "truncated": false, + "block": 9, + "row": 14675 + }, + { + "path": "devtools/conda-recipe/build.sh", + "sha256": "77325d3647b2d5dcde886c706aa490bbdd603bcd63c71007a7af0795dbb0b3ac", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 9, + "row": 13927 + }, + { + "path": "devtools/travis-ci/after_success.sh", + "sha256": "f5bb063d19e69b1b681096e22c9555ac1d5005ab77d1d1aa4df829054da5a5fd", + "language": "Shell", + "lines": 43, + "truncated": false, + "block": 9, + "row": 14172 + }, + { + "path": "devtools/travis-ci/install.sh", + "sha256": "3202a142539d69708e53e89ee67a326f0d218ecf2add596ea7ae32ca9f64412c", + "language": "Shell", + "lines": 25, + "truncated": false, + "block": 9, + "row": 14117 + }, + { + "path": "devtools/travis-ci/push-docs-to-s3.py", + "sha256": "ef68d48bae6c0ec554887ed0e960031e4fb56295b609dc119d5d50d535295063", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7446 + }, + { + "path": "docs/conf.py", + "sha256": "cd801203e0dcec5c209268b52d064448a74845f490df53a6a9f50308cbf5fd60", + "language": "Python", + "lines": 328, + "truncated": false, + "block": 9, + "row": 10921 + }, + { + "path": "examples/constant-force-optical-trap/extract-data.py", + "sha256": "7817545544df7ceaad64d1f6340d8554386eabe3e0b2ff0fc3bee95f67a6ab0b", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 9088 + }, + { + "path": "examples/constant-force-optical-trap/force-bias-optical-trap.py", + "sha256": "3a81abac703fe2da4600207b062a4bc4d845a661897ce7eb84a5b6cd3a2f91f6", + "language": "Python", + "lines": 398, + "truncated": false, + "block": 9, + "row": 11482 + }, + { + "path": "examples/harmonic-oscillators/harmonic-oscillators-distributions.py", + "sha256": "65a887c8904dc02b3b8b930925f91f324b3a2c7d688b7037efa299fc82f5ae37", + "language": "Python", + "lines": 347, + "truncated": false, + "block": 9, + "row": 11226 + }, + { + "path": "examples/harmonic-oscillators/harmonic-oscillators.py", + "sha256": "b93e8350e48008fad4d97e4bdc7f5cdef9605a29321915f534729476dbfda34e", + "language": "Python", + "lines": 1005, + "truncated": false, + "block": 9, + "row": 12347 + }, + { + "path": "examples/heat-capacity/heat-capacity.py", + "sha256": "fe27324b9f459362edd4d7ce169f9e0681ea1c4a2dd441456f3e5a4dfdf97700", + "language": "Python", + "lines": 519, + "truncated": false, + "block": 9, + "row": 11801 + }, + { + "path": "examples/parallel-tempering-2dfes/parallel-tempering-2dfes.py", + "sha256": "a3427ce73957c6987879d1b5fd2269fbee5f4701d196c867cd4b04e607552931", + "language": "Python", + "lines": 331, + "truncated": false, + "block": 9, + "row": 11414 + }, + { + "path": "examples/umbrella-sampling-fes/umbrella-sampling-advanced-fes.py", + "sha256": "4ce9e04ff9f7c92a8f4fcbf16339907b2b0fc2bb54afbea4f5d5dfbfe798ed1d", + "language": "Python", + "lines": 511, + "truncated": false, + "block": 9, + "row": 11828 + }, + { + "path": "examples/umbrella-sampling-fes/umbrella-sampling.py", + "sha256": "b641b0447673d5fc6222cc521bb90d7d6b0e5b5d16615baaee1b49a45a81ed3d", + "language": "Python", + "lines": 179, + "truncated": false, + "block": 9, + "row": 10191 + }, + { + "path": "examples/umbrella-sampling-fes/wham/dowham.pl", + "sha256": "874ec716bfbc94dc6fbabcd4c5710deae7eef44a96be717cf7006709ad0c6a80", + "language": "Perl", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6034 + }, + { + "path": "examples/umbrella-sampling-fes/wham/setupwham.pl", + "sha256": "e817b4a773d830dfc1642439c8726e1f8a13b154a84a4546dce685117823ac39", + "language": "Perl", + "lines": 37, + "truncated": false, + "block": 9, + "row": 6036 + }, + { + "path": "pymbar/__init__.py", + "sha256": "6b4ada627cf523255c2c0dc25d18a85b365f7920e4b3afb175587bebd7ebd59e", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7664 + }, + { + "path": "pymbar/_version.py", + "sha256": "53acbf249b9375dc4d9552425bedb223e2b3a1f1e33f40c98b9b7c5a6ba7710f", + "language": "Python", + "lines": 683, + "truncated": false, + "block": 9, + "row": 12064 + }, + { + "path": "pymbar/confidenceintervals.py", + "sha256": "764f6740691c9c8bed29770b1c5c712739d8dc78596738825531bdf430fcee5e", + "language": "Python", + "lines": 461, + "truncated": false, + "block": 9, + "row": 11549 + }, + { + "path": "pymbar/fes.py", + "sha256": "1032fc43f2ea6b46215b378c30cc76ea352272eb47264bf77f2e5835a200f639", + "language": "Python", + "lines": 2474, + "truncated": false, + "block": 9, + "row": 12646 + }, + { + "path": "pymbar/mbar.py", + "sha256": "59eeca0df21805694559d3c1a14c7b223f3b077850e45015bcaa965500d34ef2", + "language": "Python", + "lines": 1971, + "truncated": false, + "block": 9, + "row": 12618 + }, + { + "path": "pymbar/mbar_solvers.py", + "sha256": "8d6253910ca5704bfa8ade23fe06768b309b8c5eda9563656b76fc3afbf58632", + "language": "Python", + "lines": 1007, + "truncated": false, + "block": 9, + "row": 12354 + }, + { + "path": "pymbar/other_estimators.py", + "sha256": "c3c65de80e99f35c0aa56e45ff46e98710559562fc8a1caba5644140b02d8d8e", + "language": "Python", + "lines": 719, + "truncated": false, + "block": 9, + "row": 12202 + }, + { + "path": "pymbar/tests/test_bar.py", + "sha256": "5d8c60a4222e16d49c1dce71b71030b1731b99ab06b667b63124fb2fef303c8b", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 9222 + }, + { + "path": "pymbar/tests/test_covariance.py", + "sha256": "04db5232d93c07a61ea9dfadae7b438a4bf0e580eda8c946ca872689722b7817", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7283 + }, + { + "path": "pymbar/tests/test_exp.py", + "sha256": "11a4fbad46d16cb6f4c4e9c5abcf0199a8b17fb55771210781349064f723db6b", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 9, + "row": 8748 + }, + { + "path": "pymbar/tests/test_fes.py", + "sha256": "0073d86f2dfaf6d8b47687e05124506e4bc1618a272c1cba5a6aa108d3634046", + "language": "Python", + "lines": 558, + "truncated": false, + "block": 9, + "row": 11743 + }, + { + "path": "pymbar/tests/test_mbar.py", + "sha256": "1403e8c02a8a7a690f09a7ffdd8e41cff351c94c792a0273f46803b4b3ad0772", + "language": "Python", + "lines": 530, + "truncated": false, + "block": 9, + "row": 11753 + }, + { + "path": "pymbar/tests/test_mbar_solvers.py", + "sha256": "2ce1d483cbd4b65786c1e75cafb31b9e46111005546d931254ceb0466add4bbb", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8604 + }, + { + "path": "pymbar/tests/test_timeseries.py", + "sha256": "e483c912d094c38a5c275d26c898d3fc518573a79a00f4e76601b4e6062eb1ac", + "language": "Python", + "lines": 178, + "truncated": false, + "block": 9, + "row": 10010 + }, + { + "path": "pymbar/tests/test_utils.py", + "sha256": "f0296bdcb9136fadf66a54298dce3af0b798da460a5550c76556052b3a296db0", + "language": "Python", + "lines": 241, + "truncated": false, + "block": 9, + "row": 10173 + }, + { + "path": "pymbar/testsystems/__init__.py", + "sha256": "cc9da3cae6ab84355402d49824679e3bd26e1a282293488c4e02b47c815fcf42", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 9, + "row": 6634 + }, + { + "path": "pymbar/testsystems/exponential_distributions.py", + "sha256": "67858f149057734970510429f7abc0c9422d5ac3bff20cda60035224b4535b1d", + "language": "Python", + "lines": 246, + "truncated": false, + "block": 9, + "row": 10603 + }, + { + "path": "pymbar/testsystems/gaussian_work.py", + "sha256": "b28a14d68bb5558fa84ddc1ed264808c587e098e5a0c8b56f8596d8c333bcb7d", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 8854 + }, + { + "path": "pymbar/testsystems/harmonic_oscillators.py", + "sha256": "8362bdbc6c6dab3fe2d37356ed3f76e90c0c2ec3483cc1c5a1dcbce61221bc1d", + "language": "Python", + "lines": 259, + "truncated": false, + "block": 9, + "row": 10779 + }, + { + "path": "pymbar/testsystems/timeseries.py", + "sha256": "d9a5e97645ce8d59a6ffc91d4859694695133f486c70d2570a96592bf1fc832f", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 8181 + }, + { + "path": "pymbar/timeseries.py", + "sha256": "40b2a58bd5f89bcbfc7dc03c927deabcf8b4ae200de41deb05a123066b40cfec", + "language": "Python", + "lines": 969, + "truncated": false, + "block": 9, + "row": 12334 + }, + { + "path": "pymbar/utils.py", + "sha256": "cbd4a65de60ab4e581d8aba83d9f90f0d7bd08ac535a4738bdede24428cf33a6", + "language": "Python", + "lines": 422, + "truncated": false, + "block": 9, + "row": 11259 + }, + { + "path": "pymbar/utils_for_testing.py", + "sha256": "f0f9b08ad7cd38bf4f4fb63796364222d0d2c40cef817b796e7b4685c1cd408b", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8356 + }, + { + "path": "setup.py", + "sha256": "9ca8b82c9b86c742c272ba94016bd3aff3dac449a96fa9112a835479960e897d", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7467 + }, + { + "path": "versioneer.py", + "sha256": "f386e78239dd1c6ebaf4ef0853c5866786f5981944006e10578e571164c997c6", + "language": "Python", + "lines": 2277, + "truncated": false, + "block": 1, + "row": 9848 + } + ] +} \ No newline at end of file diff --git a/manifests/1c/zenodo__15198488.json b/manifests/1c/zenodo__15198488.json new file mode 100644 index 0000000000000000000000000000000000000000..8a8506989f073872daf0cac80eb8b793e4d722e7 --- /dev/null +++ b/manifests/1c/zenodo__15198488.json @@ -0,0 +1,327 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:15198488", + "url": "10.5281/zenodo.15198488", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "d8c459f9760307a066e49fa0d357905e91118cee6eec0ea1b56cbd4eb8cdfc58", + "language": "Text", + "lines": 13, + "truncated": false, + "block": 9, + "row": 14521 + }, + { + "path": "deprecated-code.zip/deprecated-code/beta_tuning.py", + "sha256": "acca7bc7e8f0428a68ad71aa81cf3dec1d62874e276e2c40c71c416672f62584", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6864 + }, + { + "path": "deprecated-code.zip/deprecated-code/cloning.py", + "sha256": "34117caa51710a54b6b6e16b3ce6da4e3e329e09cc6b3650125d86c2deaea21b", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 8199 + }, + { + "path": "deprecated-code.zip/deprecated-code/count_partition_cells.py", + "sha256": "2043651f946557ac62e9760d3e0016a10584dbdba76fc3a8801b40590bad2585", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 9, + "row": 9379 + }, + { + "path": "deprecated-code.zip/deprecated-code/cylinder_test.py", + "sha256": "5b51e09c9a8e388718d8431a27f31651cb9b0d5b9e263b75bcc8808f22e6c9ea", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 8794 + }, + { + "path": "deprecated-code.zip/deprecated-code/extract_rt_pca.py", + "sha256": "5c7415736514beb7d18e8afd9ad47a133d139a0a217688a7b216bd7df09ae916", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 9, + "row": 6590 + }, + { + "path": "deprecated-code.zip/deprecated-code/morphology_placement/callosum_targeting.py", + "sha256": "9299ea07ef911b28385df6834e44f51dc64fb210c0d5771792dd5f3bf176b2f0", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 9120 + }, + { + "path": "deprecated-code.zip/deprecated-code/morphology_placement/neuron_scraper.py", + "sha256": "d9972a5a445d90fc089cf5ae18a520562f6c3abead3267297e86a03968e845b0", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6711 + }, + { + "path": "deprecated-code.zip/deprecated-code/morphology_placement/plot_morphology.py", + "sha256": "990947727ab8b43196c84a3d0689fb7356e82fa84e06adbab9090b85366cfaaf", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6753 + }, + { + "path": "deprecated-code.zip/deprecated-code/morphology_placement/to_data_arrays.py", + "sha256": "99703fa563c79d54987312a4e9678812e7f77183c3e50c52bb6d27b84da6d4bd", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 9, + "row": 6469 + }, + { + "path": "deprecated-code.zip/deprecated-code/rt_conn_debug.py", + "sha256": "52398aa856dfabef974ea537586a7ab09323b0c04060cf190d38e15303c550e9", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 9, + "row": 9174 + }, + { + "path": "offline-scripts.zip/fill_connections.py", + "sha256": "5d962b227a5599747205eee258d2740be27cbd3f686c6fc15c009fba7bab3d9e", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8760 + }, + { + "path": "offline-scripts.zip/store_scaffold_info.py", + "sha256": "4acd9ee96971b9bdc125709771805dac81961d802856384e56a694cadaa387bf", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 8656 + }, + { + "path": "offline-scripts.zip/update_rtrt_connections.py", + "sha256": "5fab12693178c3eeae2c1540ee38d217ff3fdd197ee2db5dcef2296c051bc418", + "language": "Python", + "lines": 262, + "truncated": false, + "block": 9, + "row": 10853 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/neuron_mesh_utils.py", + "sha256": "6b301c5d6650c808c6b3e0b4da8e45b1c7b1b2a006214bdb16c9242644de684b", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 9, + "row": 9659 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/plot_connectivity.py", + "sha256": "76efe8c836764a09639c92bf4b983467d9b1b7b6bb5f098362c604c93b93de48", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7297 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/plot_connectivity_remote.py", + "sha256": "66d5ef9b7f320b71ace3af2cffeb0ff15af91c392d60bef48ea53c8ff8d1d745", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7199 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/rt_clouds_extraction.py", + "sha256": "c1793e574e943c94703a3fe71861f477dee1d9105d1153c0fa13f1a76b615fe2", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 8394 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/rt_morphometrics.py", + "sha256": "c81b2e59d868ef34d64ee1359adf8f1aa5b5780ac9269fd1fae2559526dc06f6", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9225 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/rt_rt.py", + "sha256": "2cd422eb4af15b0c68b874a89a39db2a7ec24dcc23bf03f821bb5c4afc92a03d", + "language": "Python", + "lines": 195, + "truncated": false, + "block": 9, + "row": 10412 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/rt_synthetic_axons.py", + "sha256": "a039429085657f3e9a5b110710f1f34ab2fcaec02d97a00d3579057054c5b61a", + "language": "Python", + "lines": 660, + "truncated": false, + "block": 9, + "row": 11992 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/rt_tc.py", + "sha256": "e77ca2528804040fca9617c9efadd4a31bf430bd8a321d5a711e04bf6b722678", + "language": "Python", + "lines": 466, + "truncated": false, + "block": 9, + "row": 11702 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/scalar_field_extraction.py", + "sha256": "919c756042c70868a1ca10b903a919249640a2f8dec196e2f9c0bb194aaef523", + "language": "Python", + "lines": 323, + "truncated": false, + "block": 9, + "row": 10995 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/tc_morphometrics.py", + "sha256": "23c4498bf23411ce28e8ab0262ae036d1f7a4f30cde0df5b5f5c8a36c7cb46ef", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7808 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/connectome/tc_rt.py", + "sha256": "804e3120e40d18b3fbed24f5cee7d8ad3f37d5dd9fd9a514a7b53172c8a1de2a", + "language": "Python", + "lines": 296, + "truncated": false, + "block": 9, + "row": 11221 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/fixed_placement.py", + "sha256": "3361611080d95fdd6aa6059872fa703a8b608bc6ec7246c1ebf566735ddb9b23", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7630 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/ish_utils.py", + "sha256": "aac1350ad3bf3604c4278d5ab70c3d6ea109cff17ffa161a270a01859a154967", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 9741 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/plot_placement.py", + "sha256": "14080ea6ab7b112dc1afd30b6e53e448cbae436d3f9549dbf77944c9eec37402", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 8029 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/plot_validation.py", + "sha256": "664a7ab05ed3f78105c150a90f9508c262d256f5f86bb6091afc8f8403b68020", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7436 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/process_expression_data.py", + "sha256": "50142e9d1ef07be4f454ec2d89c095a996b4e81046e24352b90d7e6758d822c0", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 7675 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/process_ish_data.py", + "sha256": "cc1bb42c2a1006924fb991070f5d453588cf2ffb388d44ef041c8f7f66e2b142", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9426 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/process_placement_data.py", + "sha256": "c0d45c20b13f9677527503743d316c08327a51c32ecd5edff0070aad06fe66d9", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 8967 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/segment_rt.py", + "sha256": "65923e70b062275d338d01bc1ac6dd3d9c1063b127a463080ec8e3e4fe171470", + "language": "Python", + "lines": 112, + "truncated": false, + "block": 9, + "row": 8988 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/store_halved_volumes.py", + "sha256": "6f939c3495b88478c66ca758bfeb6ce212b7f50290accf713aa1be8ee93e0ee7", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7599 + }, + { + "path": "thalamic-scaffold.zip/thalamic-scaffold/placement/store_injection_data.py", + "sha256": "73cd6df2adc65c668c4a0e8ba231c54156f4b409b0e0820b22cddc0ce7b18cc6", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 8851 + } + ] +} \ No newline at end of file diff --git a/manifests/1e/zenodo__18745988.json b/manifests/1e/zenodo__18745988.json new file mode 100644 index 0000000000000000000000000000000000000000..c695997fe8b2022d79033d3a45404be851ca54ba --- /dev/null +++ b/manifests/1e/zenodo__18745988.json @@ -0,0 +1,165 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18745988", + "url": "https://doi.org/10.5281/zenodo.18745988", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "c37ab2015aa117ea6eb5eed4168c235af09a55c08aaef6e3c852b232c7e2c8bd", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2841 + }, + { + "path": "README.MD", + "sha256": "d50b9fe597177e0758f6577e5900a6c88b04d721feb86b5f81dd146821145cd9", + "language": "Text", + "lines": 155, + "truncated": false, + "block": 9, + "row": 14666 + }, + { + "path": "main.py", + "sha256": "f0591a4cd61a9ce22bc0fc74cb59ff5bceaa2e477e4c624643b21c94d72c91ab", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8168 + }, + { + "path": "scripts/preprocess_rsna.py", + "sha256": "f7fa2d751c293ad9c8e9b4e9cdb16c113b4063da01a383f76848d7a9603a43a7", + "language": "Python", + "lines": 395, + "truncated": false, + "block": 9, + "row": 11268 + }, + { + "path": "scripts/s1_improved_3dcnn_tep.py", + "sha256": "acf6207ad0d188ac188962b6f7df5356a47452eba9902fbf8b03fa29bfaaf9d0", + "language": "Python", + "lines": 1034, + "truncated": false, + "block": 9, + "row": 12439 + }, + { + "path": "scripts/s1_improved_3dcnn_tep_copy1.py", + "sha256": "f9c83790cd92cd540618391dfd9b57a9ffd6721b840481b59162e90ca7d9ab00", + "language": "Python", + "lines": 954, + "truncated": false, + "block": 9, + "row": 12404 + }, + { + "path": "scripts/s2_load_images_hucsr.py", + "sha256": "50ee4074182e9c489cf972fa86f1753e8cca11cd8dd40bdd6af3104e0917cbb0", + "language": "Python", + "lines": 596, + "truncated": false, + "block": 9, + "row": 11858 + }, + { + "path": "scripts/s3_fine_tunning.py", + "sha256": "163a7d0b8828ae8f3591a1806c174eb40f6751bdc1259654df6c926e2d75fdac", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 9, + "row": 10006 + }, + { + "path": "scripts/s4_inference_tep.py", + "sha256": "38866cf87f560c4b21f254926848ae715d81e04e08331949a2375dec78e15f00", + "language": "Python", + "lines": 214, + "truncated": false, + "block": 9, + "row": 10410 + }, + { + "path": "scripts/s4_inference_tep_v2.py", + "sha256": "270f60f81aa4eaf30b9cb5e82fcb95a13fc8786edced0c0b51ed99f2742ab3dd", + "language": "Python", + "lines": 269, + "truncated": false, + "block": 9, + "row": 10716 + }, + { + "path": "scripts/steps/s1_preprocess_data_hucsr.py", + "sha256": "19c3822a216dd24f0c22ed9f1645b806e718e51c87e0dd8acf0f0e658fba7157", + "language": "Python", + "lines": 594, + "truncated": false, + "block": 9, + "row": 11849 + }, + { + "path": "scripts/steps/s2_create_model.py", + "sha256": "276133c0a48d9b63445ace272a1d040e1f905c8e8b4d980ce81c982aef28f0f0", + "language": "Python", + "lines": 403, + "truncated": false, + "block": 9, + "row": 11692 + }, + { + "path": "scripts/steps/s3_inference.py", + "sha256": "75609f0f81ad1fe94b9561d23c62b1ea26fd69fb23c67cd82ebb06e3d976a532", + "language": "Python", + "lines": 330, + "truncated": false, + "block": 9, + "row": 11002 + }, + { + "path": "test.py", + "sha256": "7c960aac6d0c000e83e229d4a1e41c94155c0d472eea419b052a3894bc79f38e", + "language": "Python", + "lines": 212, + "truncated": false, + "block": 9, + "row": 10462 + }, + { + "path": "utils/config.py", + "sha256": "8138ec0ebacbd48b20b7af4ee243d266f0ad0ca33c7a97a3ba8b216a5b394c33", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 8287 + }, + { + "path": "utils/logger.py", + "sha256": "8d65897d2de3cab399dd32f2ee5c83b9885fa1e417f2793225479f5b67162b0e", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 9, + "row": 9831 + }, + { + "path": "utils/visualization.py", + "sha256": "25385e24d4b1f31e5a9ce264f907fb15896683c0ab85dd9292497fee2da48d64", + "language": "Python", + "lines": 472, + "truncated": false, + "block": 9, + "row": 11564 + } + ] +} \ No newline at end of file diff --git a/manifests/1f/github.com__ulgenklc__brain_states.json b/manifests/1f/github.com__ulgenklc__brain_states.json new file mode 100644 index 0000000000000000000000000000000000000000..602b8107e6abdaad8fc9be0f6316aaa4432d12bb --- /dev/null +++ b/manifests/1f/github.com__ulgenklc__brain_states.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ulgenklc/brain_states", + "url": "https://github.com/ulgenklc/Brain_states", + "host": "github.com", + "commit": "8f93894ad16451c3f0668a8d7b1d6bd38b38c529", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "6af6fed1be3058f460c8bb6b3f338a016da7f9266c26e7c474627e0ae0a0e56c", + "language": "Text", + "lines": 126, + "truncated": false, + "block": 9, + "row": 14649 + }, + { + "path": "tutorial.ipynb", + "sha256": "c4bf1a4be3f8f653b09e65be0375c7f4c92cbd8b3478a59fdd94e508c56963cf", + "language": "Jupyter", + "lines": 1306, + "truncated": false, + "block": 9, + "row": 2731 + } + ] +} \ No newline at end of file diff --git a/manifests/20/github.com__ioannaskampardoni__ccl-nmf.json b/manifests/20/github.com__ioannaskampardoni__ccl-nmf.json new file mode 100644 index 0000000000000000000000000000000000000000..3f5099bfd509ac20f76c21500fcbc27e4a872d26 --- /dev/null +++ b/manifests/20/github.com__ioannaskampardoni__ccl-nmf.json @@ -0,0 +1,84 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ioannaskampardoni/ccl-nmf", + "url": "https://github.com/IoannaSkampardoni/CCL-NMF", + "host": "github.com", + "commit": "76d8801e3f9bf821e8a46ebf5f4c6d05349cc487", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "38799b7c7ba9bb3a385f65f0c98f330ca45b34f9681e9461bfb29a8cc5efffd8", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2827 + }, + { + "path": "README.md", + "sha256": "93e04e3bdeca15da21117d75b0425bb162418253e977b6cb6abfeac120dc78b2", + "language": "Text", + "lines": 130, + "truncated": false, + "block": 9, + "row": 14623 + }, + { + "path": "ccl_nmf/C_map_calc.py", + "sha256": "58ca1b5b34e3335e8396f3770d065bba30355fda7fe6366899ba7ec417c6346f", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 8520 + }, + { + "path": "ccl_nmf/L_map_calc.py", + "sha256": "03b98c5cef9b47098b442acae07fa2e7db49f09821c28527f52eb631b1d6dcbe", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 9, + "row": 10046 + }, + { + "path": "ccl_nmf/aa.py", + "sha256": "18ceeef71603cd145793b2c7e69957971ae41e13f8759afd8fe8afc3295347a1", + "language": "Python", + "lines": 403, + "truncated": false, + "block": 9, + "row": 11537 + }, + { + "path": "ccl_nmf/jointNMF.py", + "sha256": "d0ef4a8eaf21d912a0c3a8053941050abbac13a92ba9be5046aded5e1cb22fc9", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 9, + "row": 9526 + }, + { + "path": "ccl_nmf/models.py", + "sha256": "825a30fecd210d3cd7b84192fa41d867e5a3af37f9500b0db8caba3121bbd2ca", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 9, + "row": 7410 + }, + { + "path": "ccl_nmf/run_jointNMF.py", + "sha256": "e895fa6e758c7f84157c4ed4998265ee23f7398185597dc7449dbb0dbb216844", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 9, + "row": 9574 + } + ] +} \ No newline at end of file diff --git a/manifests/20/zenodo__19209884.json b/manifests/20/zenodo__19209884.json new file mode 100644 index 0000000000000000000000000000000000000000..8e19184ff6c6e631b99c50ca502091a06b7f9457 --- /dev/null +++ b/manifests/20/zenodo__19209884.json @@ -0,0 +1,318 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19209884", + "url": "https://doi.org/10.5281/zenodo.19209884", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "code.zip/code/behavioural_data_analyses/behaviour_analyses.ipynb", + "sha256": "2f0e70e25ae3c69c33594bb43f59e76548749bf40253b09ffbac2ebd441c4f4a", + "language": "Jupyter", + "lines": 343, + "truncated": false, + "block": 9, + "row": 2466 + }, + { + "path": "code.zip/code/behavioural_data_analyses/get_rt_scanner.py", + "sha256": "8389b4b5b3d4e872f3806202ce41fb1ff363e775b2d0c0c88a16ede50d786897", + "language": "Python", + "lines": 210, + "truncated": false, + "block": 9, + "row": 10188 + }, + { + "path": "code.zip/code/extras/create_rois.py", + "sha256": "c16f44887c4fd73725b82f62b32dbee4df768cac214a89c1c5023def57c878d7", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 9, + "row": 9432 + }, + { + "path": "code.zip/code/extras/juelich_subject_specific.py", + "sha256": "daa247c5191b0555ad91fdf76afa1200925d6eebdc7e1f661b3b0751cbb4e8ef", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 9, + "row": 8912 + }, + { + "path": "code.zip/code/extras/reliable_rois.ipynb", + "sha256": "69cb497fc15766c5a658a0b1de5641600ab350931c964e7adff0574acd8d6e85", + "language": "Jupyter", + "lines": 81, + "truncated": false, + "block": 9, + "row": 2245 + }, + { + "path": "code.zip/code/extras/voxel_reliability_maps.py", + "sha256": "6efbc9df49e1fd34c02a10bf42a70b3867980245308cbd91f5e9129e815215bf", + "language": "Python", + "lines": 232, + "truncated": false, + "block": 9, + "row": 10315 + }, + { + "path": "code.zip/code/eyetracking_data_analyses/0_move_and_clean_eyedata.py", + "sha256": "9e0bae14fcb15968646a2f91472ca93f90a2144e9eb6fa25936a007b1a83d932", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 9, + "row": 9654 + }, + { + "path": "code.zip/code/eyetracking_data_analyses/1_eye_create_events.py", + "sha256": "f71a1d7040bdda379c00e0c6a4ceeccab2d9ae7f2ff6f0b318dba8bbfd50e8cb", + "language": "Python", + "lines": 346, + "truncated": false, + "block": 9, + "row": 11539 + }, + { + "path": "code.zip/code/eyetracking_data_analyses/2_eye_exploration_allsubs.ipynb", + "sha256": "d1c2f7eeef6421a382822b6f0ffccd77c293e5adc0246616daf65cea7b7c5808", + "language": "Jupyter", + "lines": 1159, + "truncated": false, + "block": 9, + "row": 2710 + }, + { + "path": "code.zip/code/eyetracking_data_analyses/3_directional_stat_allsubs.ipynb", + "sha256": "43891a5ef7a96b429384aaad8c1f55009ca7404be0679553fc93d4b4415d524d", + "language": "Jupyter", + "lines": 466, + "truncated": false, + "block": 9, + "row": 2609 + }, + { + "path": "code.zip/code/eyetracking_data_analyses/5_deepmreye_eye_comparisons.ipynb", + "sha256": "32bf61f392a9264a60180c47e640017dffd51b51f9b449a69020ee0d03c625af", + "language": "Jupyter", + "lines": 293, + "truncated": false, + "block": 9, + "row": 2473 + }, + { + "path": "code.zip/code/eyetracking_data_analyses/6_deepmreye_eye_comparisons_y.ipynb", + "sha256": "fe9371654ebbdab8cd9ceb19bc538ddf94fd8fe4040c7bb4a5c19ce1c17f296f", + "language": "Jupyter", + "lines": 48, + "truncated": false, + "block": 9, + "row": 2241 + }, + { + "path": "code.zip/code/neural_data_analyses/10_single_subject_searchlight.py", + "sha256": "49aa2bb837259e05dd2cc0572bf0cee185da344bc35ea69d12dccbf58bf2f740", + "language": "Python", + "lines": 295, + "truncated": false, + "block": 9, + "row": 11139 + }, + { + "path": "code.zip/code/neural_data_analyses/10_single_subject_searchlight_partials.py", + "sha256": "18fc81fdd9668600d93768d3fd0a0456c4280fb0efae070670d1f1c35853e4ad", + "language": "Python", + "lines": 266, + "truncated": false, + "block": 9, + "row": 10800 + }, + { + "path": "code.zip/code/neural_data_analyses/10a_submit_slurm_searchlight.py", + "sha256": "e1a58047714044e479e4519b4d13634974f3e96f7095c34190f6846958f61183", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8235 + }, + { + "path": "code.zip/code/neural_data_analyses/11_convert_T1w_MNI_searchlight.py", + "sha256": "53fc95ca7d18ee02bbf47e20554811d18383f55f2c695d862e6d39c151944e50", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 8969 + }, + { + "path": "code.zip/code/neural_data_analyses/12_cluster_correction_searchlight.py", + "sha256": "da3ce057e7bf874865386f0241b2c73adac7ac9f862470dc3751270be4c29e23", + "language": "Python", + "lines": 263, + "truncated": false, + "block": 9, + "row": 10577 + }, + { + "path": "code.zip/code/neural_data_analyses/13_deepmreye.py", + "sha256": "2a9ff448c737b08c48ea52b0f20062efabfc1efbd2966efff5e43246a0984599", + "language": "Python", + "lines": 232, + "truncated": false, + "block": 9, + "row": 10521 + }, + { + "path": "code.zip/code/neural_data_analyses/14_deepmreye_events.py", + "sha256": "fe1713735d8ae0bbc6bf991f4fea284c70e8226193cede83c097ccf29168a990", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 9, + "row": 9527 + }, + { + "path": "code.zip/code/neural_data_analyses/1_dicom_to_bids.py", + "sha256": "0811dbe183f0215863be567f4dd54878690a226d1093865474ee492d42c3ba66", + "language": "Python", + "lines": 408, + "truncated": false, + "block": 9, + "row": 11216 + }, + { + "path": "code.zip/code/neural_data_analyses/2_fmriprep_acthippo.py", + "sha256": "d5ee4430d5f48166fd1942c3ffa3c9ce9768c61aec92da1a7dafd8ac61e9b6f9", + "language": "Python", + "lines": 236, + "truncated": false, + "block": 9, + "row": 10363 + }, + { + "path": "code.zip/code/neural_data_analyses/3_create_events.py", + "sha256": "43e929ab7f84bde32aeb3df55a24a31b09aa1466408fdbe2d0ef98d914c565ea", + "language": "Python", + "lines": 335, + "truncated": false, + "block": 9, + "row": 11498 + }, + { + "path": "code.zip/code/neural_data_analyses/3_create_events_univariate.py", + "sha256": "bfe0544bd84135a21639b4e065ff387509ff48970bcd2ac396010da25047c66f", + "language": "Python", + "lines": 351, + "truncated": false, + "block": 9, + "row": 11573 + }, + { + "path": "code.zip/code/neural_data_analyses/4_run_glm_single_subject.py", + "sha256": "845389b7b81e2777005407cf78a265a8480395ca166b3d59cf7197b5561591b6", + "language": "Python", + "lines": 245, + "truncated": false, + "block": 9, + "row": 10528 + }, + { + "path": "code.zip/code/neural_data_analyses/4_run_runwise_glm_single_subject.py", + "sha256": "6970fc43196fc2b116c455b43a3fb1dc3ffc78ea4f87d11954a33f9df446c789", + "language": "Python", + "lines": 248, + "truncated": false, + "block": 9, + "row": 10675 + }, + { + "path": "code.zip/code/neural_data_analyses/4_run_trialwise_glm_single_subject.py", + "sha256": "af5fc5bc01468c54e9321c426025924f4a1ef9f3d3acd9cd626927fdfaf44df1", + "language": "Python", + "lines": 237, + "truncated": false, + "block": 9, + "row": 10635 + }, + { + "path": "code.zip/code/neural_data_analyses/4a_submit_slurm_glm.py", + "sha256": "145ec5339fcd1d55beeb92147a4ee693d148b6a42b0cfaa5541095470b487f50", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 8062 + }, + { + "path": "code.zip/code/neural_data_analyses/4b_submit_slurm_glm_runwise.py", + "sha256": "d128247ae8ad692595b451202c5d6676801bcc3e70ecc982ff9898a13c6fe6dc", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 8092 + }, + { + "path": "code.zip/code/neural_data_analyses/4c_submit_slurm_glm_trialwise.py", + "sha256": "e9f7fcf04e7074f89ac43aa9a29c5b6769b1a0c668fc218cfe5d25a0d399e8cb", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 8105 + }, + { + "path": "code.zip/code/neural_data_analyses/5_convert_T1w_MNI.py", + "sha256": "72c470ffa15f6f422d658d642213bd7ffef4c260f4ed621da9769bfc39618860", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 9, + "row": 8806 + }, + { + "path": "code.zip/code/neural_data_analyses/6_cluster_correction.py", + "sha256": "da77d8b48b00d7ad39aa228c08bcbe2448966f5beffd65c5620d297ec26604cf", + "language": "Python", + "lines": 242, + "truncated": false, + "block": 9, + "row": 10484 + }, + { + "path": "code.zip/code/neural_data_analyses/7_create_neural_rdms.py", + "sha256": "8067956498a81d6ff7bdd5e09fea68479dfd550c4a78584f4319ce350bd4e9fc", + "language": "Python", + "lines": 198, + "truncated": false, + "block": 9, + "row": 10340 + }, + { + "path": "code.zip/code/neural_data_analyses/7a_submit_slurm_neural_rdms.py", + "sha256": "acc67ae0f16fbdceacd2e32bcf73bd9203f5dbdb95358aa9db9171f495e0a8b5", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 9, + "row": 8635 + }, + { + "path": "code.zip/code/neural_data_analyses/8_roi_based_rsa.ipynb", + "sha256": "d3000839f893efa6356e09ccca4e1dd7141e6972e739e2ff21931e532ba0ecc8", + "language": "Jupyter", + "lines": 466, + "truncated": false, + "block": 9, + "row": 2594 + } + ] +} \ No newline at end of file diff --git a/manifests/21/github.com__rsinghlab__timeflies.json b/manifests/21/github.com__rsinghlab__timeflies.json new file mode 100644 index 0000000000000000000000000000000000000000..dabacea736f0411130c96c9f5d10297a48f1af6a --- /dev/null +++ b/manifests/21/github.com__rsinghlab__timeflies.json @@ -0,0 +1,624 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/rsinghlab/timeflies", + "url": "https://github.com/rsinghlab/TimeFlies", + "host": "github.com", + "commit": "c5c6e5e35621487514bc11039abb456313b2ba80", + "license": "CC-BY-NC-ND-4.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "with_conditions", + "files": [ + { + "path": "LICENSE", + "sha256": "ccb2f53a4af78841034cda90924b75cdeafef5df91133fd1ee0aeed210d7ff7d", + "language": "License", + "lines": 36, + "truncated": false, + "block": 9, + "row": 2881 + }, + { + "path": "README.md", + "sha256": "61449c89519ba054be767000c89e0b735aad2b1048d2d6c911293b6bb9e048ff", + "language": "Text", + "lines": 116, + "truncated": false, + "block": 9, + "row": 14615 + }, + { + "path": "examples/visualizer.py", + "sha256": "3543be3dc2cb657743f8afffe554da362d7abb105fa7175394fc51f5f5283fbd", + "language": "Python", + "lines": 402, + "truncated": false, + "block": 9, + "row": 11209 + }, + { + "path": "src/timeflies/__init__.py", + "sha256": "76ea23a066937ec4281e39e30dd3485a853384142d164ebadc3c6133304385b2", + "language": "Python", + "lines": 189, + "truncated": false, + "block": 9, + "row": 9601 + }, + { + "path": "src/timeflies/analysis/__init__.py", + "sha256": "74e6e655dc2b64f7fc34efeb2aef6cd4b535abd5e6a8a4bdffa2d559f2400327", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6384 + }, + { + "path": "src/timeflies/analysis/eda.py", + "sha256": "768b7be683ae71f05bd636c58041fbf30406b7669e05f647b3760bcba2109e17", + "language": "Python", + "lines": 992, + "truncated": false, + "block": 9, + "row": 12323 + }, + { + "path": "src/timeflies/analysis/visuals.py", + "sha256": "eabb93335cd591cc27a2c108f080097172ee6b975bbfd9a18561c189b8e69028", + "language": "Python", + "lines": 948, + "truncated": false, + "block": 9, + "row": 12351 + }, + { + "path": "src/timeflies/cli/__init__.py", + "sha256": "df8249dc57ae21df242b55624b47e0ee05cc4d533017efcc9c43105dcd6666ae", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6668 + }, + { + "path": "src/timeflies/cli/commands/__init__.py", + "sha256": "4c4e0b764ae7f8a1ca183ae8b35c2dd27b91e5cb0678f2c000b84f4b7b6e78f2", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 8098 + }, + { + "path": "src/timeflies/cli/commands/_utils.py", + "sha256": "5a461c39be03739eca33b34afcf0375565d5a2c3c5839ccfdeca55c5e41d9f57", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6820 + }, + { + "path": "src/timeflies/cli/commands/advanced.py", + "sha256": "423018f7588b6172e94d9ebe2ababa94a1b7377a2fb0d2762f1a28e1aa222f2c", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 9, + "row": 9241 + }, + { + "path": "src/timeflies/cli/commands/analysis.py", + "sha256": "dff86fa3e6bbb5174ba44ff601f4cde2a852b438d73390a4fded32b66d94e92f", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 9, + "row": 10023 + }, + { + "path": "src/timeflies/cli/commands/setup.py", + "sha256": "95377a2167f207743f70ce2dbe7f037da168e2929ea7dc83c0e6196cce1ec8e8", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 8718 + }, + { + "path": "src/timeflies/cli/commands/testing.py", + "sha256": "510d613d025e51e94829d51f8eb4ca9e6eb8fa3d734a69661915903e987d0fdd", + "language": "Python", + "lines": 748, + "truncated": false, + "block": 9, + "row": 12086 + }, + { + "path": "src/timeflies/cli/commands/training.py", + "sha256": "b280d1a81ecc8cb059d30d5c44cab505a9d89b613462b333fe85bbcb9da0b788", + "language": "Python", + "lines": 294, + "truncated": false, + "block": 9, + "row": 10956 + }, + { + "path": "src/timeflies/cli/main.py", + "sha256": "ccb8baa3743f74d6d4fb08ab0b6f60a8eef57bbbf1731775e330640701900a22", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6786 + }, + { + "path": "src/timeflies/cli/parser.py", + "sha256": "88dbb1d8f76bf573ff6c7e6f9262ceeadad336df10d0a5d5e2c9d1e9f564dfa2", + "language": "Python", + "lines": 285, + "truncated": false, + "block": 9, + "row": 10636 + }, + { + "path": "src/timeflies/core/__init__.py", + "sha256": "361d84720803a44dc8ad0c987bab3fad9f421435bd71e1758c9f354ed36f9b47", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 9, + "row": 6556 + }, + { + "path": "src/timeflies/core/active_config.py", + "sha256": "e62d9b848e472d60c05236748abeede91282aa804b82ac3d1d699559935458e8", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 9, + "row": 9977 + }, + { + "path": "src/timeflies/core/config_manager.py", + "sha256": "42046b0a07e8f53a037ab151d42d6aaeecc5d3f0e0e0d9ea04b839538a6a57b7", + "language": "Python", + "lines": 411, + "truncated": false, + "block": 9, + "row": 11534 + }, + { + "path": "src/timeflies/core/hyperparameter_tuner.py", + "sha256": "84a52946647aa9fe942739085e2ac8c7325306ebaf445eab9ff599ec6b42b38a", + "language": "Python", + "lines": 893, + "truncated": false, + "block": 9, + "row": 12303 + }, + { + "path": "src/timeflies/core/model_manager.py", + "sha256": "e29fdb43387ae19f5a972326fc75ae9f72fc057dc7d04b7fc579a09aeb36ddd3", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 9, + "row": 10858 + }, + { + "path": "src/timeflies/core/model_queue.py", + "sha256": "ba0ae18f4c34ceffa77692ace09f34dd32d7a762278134bbf30de860e90cfb3b", + "language": "Python", + "lines": 892, + "truncated": false, + "block": 9, + "row": 12332 + }, + { + "path": "src/timeflies/core/pipeline_manager.py", + "sha256": "e8789efc76c1e6e46e986fe8820604c3e2192652127e91a3d31e27cd4edd184c", + "language": "Python", + "lines": 1263, + "truncated": false, + "block": 9, + "row": 12522 + }, + { + "path": "src/timeflies/data/__init__.py", + "sha256": "e51ccc2fc05de79c081f0c2c875b9f254865b1be1ca4cda9e493566557ec267a", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6402 + }, + { + "path": "src/timeflies/data/loaders.py", + "sha256": "500666dd29f510e9500a30f09ca701ac9cda99510464aaac32545792f4035a24", + "language": "Python", + "lines": 163, + "truncated": false, + "block": 9, + "row": 9853 + }, + { + "path": "src/timeflies/data/preprocessing/__init__.py", + "sha256": "bd20ce83ca5ffc331fab81390fb2aabe4c0096f31567f00794aebd48bf5f1346", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6407 + }, + { + "path": "src/timeflies/data/preprocessing/batch_correction.py", + "sha256": "6ce34c4a79625202ffd4d5b71385bd9ac4c681c7379e45ca3d13e201fa18fc63", + "language": "Python", + "lines": 641, + "truncated": false, + "block": 9, + "row": 12036 + }, + { + "path": "src/timeflies/data/preprocessing/data_processor.py", + "sha256": "eff0139c877990adecec00a48770faca0d720c868da43ca041fec71562098e94", + "language": "Python", + "lines": 756, + "truncated": false, + "block": 9, + "row": 12318 + }, + { + "path": "src/timeflies/data/preprocessing/gene_filter.py", + "sha256": "61597a8fb3c9a46a0a6a1331e64d93ebf992baedad844c36623ee029f15a36ca", + "language": "Python", + "lines": 281, + "truncated": false, + "block": 9, + "row": 10927 + }, + { + "path": "src/timeflies/data/setup.py", + "sha256": "c3be05662d0d49fbf33df2aac4d5eb9df6df4c4d9a515052c6a0ac585e877cd4", + "language": "Python", + "lines": 558, + "truncated": false, + "block": 9, + "row": 12005 + }, + { + "path": "src/timeflies/display/__init__.py", + "sha256": "79fadaa44ebbfe3732bdb5502b710b76ac5d0471b28738877f6731a64de3661a", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6105 + }, + { + "path": "src/timeflies/display/display_manager.py", + "sha256": "23a627dceb00ae70ae591be5296b8a6b98a9afae1659928f168420fa5efac2e8", + "language": "Python", + "lines": 336, + "truncated": false, + "block": 9, + "row": 11316 + }, + { + "path": "src/timeflies/evaluation/__init__.py", + "sha256": "e40db0ffe6fbc68bbdc058b7888868f5820821c418cdf7cd727a7183f5fa1b11", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6417 + }, + { + "path": "src/timeflies/evaluation/interpreter.py", + "sha256": "d2852131431c48c4392f66ae4d7b6552d73810f15e091924e79bcf84654c0a6d", + "language": "Python", + "lines": 668, + "truncated": false, + "block": 9, + "row": 12076 + }, + { + "path": "src/timeflies/evaluation/metrics.py", + "sha256": "e42f0e053aacdbce775522ca84a339ba17140409742ad9ba1dbf0cc203fe4b4f", + "language": "Python", + "lines": 1422, + "truncated": false, + "block": 9, + "row": 12551 + }, + { + "path": "src/timeflies/models/__init__.py", + "sha256": "959e83b2260ed32e63c910452055fff619bd051957291747f8710b107caa45b4", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6467 + }, + { + "path": "src/timeflies/models/model.py", + "sha256": "06722180ec7f0cef2fc0a187be37c5e6a76d3478b656a6a0caa960725171a024", + "language": "Python", + "lines": 1434, + "truncated": false, + "block": 9, + "row": 12538 + }, + { + "path": "src/timeflies/models/model_factory.py", + "sha256": "0ac3bbe9fcbaed38cb55051bd493a87eaef44eb9b5376e38ebdefb050915599f", + "language": "Python", + "lines": 727, + "truncated": false, + "block": 9, + "row": 12136 + }, + { + "path": "src/timeflies/timeflies_cli.py", + "sha256": "41647bd49517e6d9efbe363ca9b0ac7105c8161f28175e283a2d6a73bf71bdaa", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7314 + }, + { + "path": "src/timeflies/utils/exceptions.py", + "sha256": "8cc7f102ff51519c2c1d122ef6eeb634485811b9ec571814e5ad8c8885047fff", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 9, + "row": 8165 + }, + { + "path": "src/timeflies/utils/gpu_handler.py", + "sha256": "378d3caeeadf7e0c555700e4d8018cdec93458c3045b9f2fd3fd64a3029888de", + "language": "Python", + "lines": 166, + "truncated": false, + "block": 9, + "row": 10151 + }, + { + "path": "src/timeflies/utils/path_manager.py", + "sha256": "a874315398c7c075a5ac4889ec4df2609491470667f42016fde631e8d6ca2adf", + "language": "Python", + "lines": 1164, + "truncated": false, + "block": 9, + "row": 12469 + }, + { + "path": "src/timeflies/utils/split_naming.py", + "sha256": "519b19fc58103af37532317348d2d55be8a870bc1b52ec4d171fbb62d8613f5e", + "language": "Python", + "lines": 274, + "truncated": false, + "block": 9, + "row": 10764 + }, + { + "path": "src/timeflies/utils/storage_manager.py", + "sha256": "20fb5ff82197f89dac872c4b77db7719ffb998595b26162dd940e2507592ba27", + "language": "Python", + "lines": 403, + "truncated": false, + "block": 9, + "row": 11438 + }, + { + "path": "tests/__init__.py", + "sha256": "5a3fabd45c16af5b6aca555f63abd07a9063ed1e2d64408f48099360c3572b26", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6115 + }, + { + "path": "tests/conftest.py", + "sha256": "f46eff0ca53b298a916254e68a9b1b1394da788abac4c6c68f03e7a30e6a8025", + "language": "Python", + "lines": 314, + "truncated": false, + "block": 9, + "row": 10875 + }, + { + "path": "tests/fixtures/unit_test_data.py", + "sha256": "f5ce233c97c356641be860be45ce1eca9dc63b05470f0fbe6be78975926df493", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 9, + "row": 9637 + }, + { + "path": "tests/integration/test_e2e_workflow.py", + "sha256": "6f3923c403b0a06a90bce68a36e08a023dcd290e4c8f3df616433c445fb6478b", + "language": "Python", + "lines": 216, + "truncated": false, + "block": 9, + "row": 10386 + }, + { + "path": "tests/integration/test_evaluation_workflows.py", + "sha256": "b92764554743147d3aa215cf57757f33678c74e8c749d380e8f12db404c97b4c", + "language": "Python", + "lines": 383, + "truncated": false, + "block": 9, + "row": 11417 + }, + { + "path": "tests/integration/test_hyperparameter_tuning_e2e.py", + "sha256": "599b2e7182fa0bdc9691b1fab7eece98ef8ae52ebc43640d960bab2379f87989", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 9, + "row": 9488 + }, + { + "path": "tests/integration/test_model_queue_e2e.py", + "sha256": "4a2172d560e0c29f6c0abf9496ec0c5a7c58884f54b95f2c3d2fc03c4ede9119", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 9351 + }, + { + "path": "tests/integration/test_pipeline_e2e.py", + "sha256": "66e0be1f7bf249b508cce88f394c7af75a97ed5349c489b48bbd112436d676dc", + "language": "Python", + "lines": 200, + "truncated": false, + "block": 9, + "row": 10123 + }, + { + "path": "tests/integration/test_real_data_workflows.py", + "sha256": "3db068ae0114681276dc4f7015afaa7a8356e43036ec347be168d5d99fd2c640", + "language": "Python", + "lines": 449, + "truncated": false, + "block": 9, + "row": 11522 + }, + { + "path": "tests/system/test_installation.py", + "sha256": "7449052c09f5935df89dfe67912d3a10d3c2f14b1ab4521cf76a56972deb55fd", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 9, + "row": 10753 + }, + { + "path": "tests/test_performance.py", + "sha256": "1080bdbf5b01fe1440574d1716e817050208763e0c601f4829befa31bfacb439", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 9, + "row": 9981 + }, + { + "path": "tests/test_runner.py", + "sha256": "af36573d350c2355590c900b1ec0e61a429d93b433e9a120e747c768a0ba42ea", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 7978 + }, + { + "path": "tests/unit/__init__.py", + "sha256": "6792ce903255fc3383f7bf7bd9a76b21dbc835961724913737b9749bf6496187", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6121 + }, + { + "path": "tests/unit/test_cli_commands.py", + "sha256": "b625370e1b922cfb79a78433791cb65e0c5dcdfb9637b898ae525eca84ccd505", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 9, + "row": 9872 + }, + { + "path": "tests/unit/test_cli_parser.py", + "sha256": "0708be35243c140171434fb8bf785c9f56fe2055185df5708693eab78dcafac7", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 9, + "row": 7286 + }, + { + "path": "tests/unit/test_configuration.py", + "sha256": "369ad4704e6f584412433c98ad4b07f35a9293fb9a0479c10668c548cffb73dc", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 9, + "row": 8893 + }, + { + "path": "tests/unit/test_data_processing.py", + "sha256": "b111876d8f9ba46a25f7610e205701f0bf921a6663555948bcdf03129ef70101", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 8371 + }, + { + "path": "tests/unit/test_eda_analysis.py", + "sha256": "5e45b307f8653fa8e6dc9002ec84d4a343866dc97d43167edc836554da17e048", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 9, + "row": 7287 + }, + { + "path": "tests/unit/test_evaluation_integration.py", + "sha256": "e2dd13e064edc05a9067f520aedd0316c78ee7452851920ca5d2f011c60638ae", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 9, + "row": 9707 + }, + { + "path": "tests/unit/test_evaluation_metrics.py", + "sha256": "1dc72b4816b7484db6419f1c7d6732fb4bbe3ac995495b39b7cc1342a717cd04", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 7184 + }, + { + "path": "tests/unit/test_hyperparameter_tuner.py", + "sha256": "65b854907b590d2d4ece75630a07dab87063683a908b2335f5c5e10b4ad3839b", + "language": "Python", + "lines": 312, + "truncated": false, + "block": 9, + "row": 11040 + }, + { + "path": "tests/unit/test_model_factory.py", + "sha256": "98ae6343f14acbf2610d53c5e17cd878af359f7a12cd3ce691d749226e02e65b", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 9, + "row": 8084 + }, + { + "path": "tests/unit/test_model_queue.py", + "sha256": "cd2cf2f08fcca3937a8e3e871e001e21337b8e2484a4e16996c7b6fc4645ae2b", + "language": "Python", + "lines": 308, + "truncated": false, + "block": 9, + "row": 10932 + } + ] +} \ No newline at end of file diff --git a/manifests/22/figshare__6427334.json b/manifests/22/figshare__6427334.json new file mode 100644 index 0000000000000000000000000000000000000000..3b3f9cab6357c10abe71d24276a2d85e9a1342b8 --- /dev/null +++ b/manifests/22/figshare__6427334.json @@ -0,0 +1,345 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "figshare:6427334", + "url": "https://doi.org/10.6084/m9.figshare.6427334.v5", + "host": "figshare.com", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "code availability/DR_PBase_setup.m", + "sha256": "6ecc9dde249392cf87127530aae1ecdc2ed0f51f1445923b2b7a9b84d7a9557e", + "language": "MATLAB", + "lines": 291, + "truncated": false, + "block": 9, + "row": 5544 + }, + { + "path": "code availability/DR_PlotClustCompPowerDipole.m", + "sha256": "15030ce48c53e554b1208f05f784f53a6ef3896947b8afaa818d69a3b755e8ec", + "language": "MATLAB", + "lines": 701, + "truncated": false, + "block": 9, + "row": 5901 + }, + { + "path": "code availability/DR_PlotClustCompmap.m", + "sha256": "2f193b2722fabc7cc0839643fec8319512459919051e0413a4586b3842605d72", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 4473 + }, + { + "path": "code availability/DR_PlotClustPBase.m", + "sha256": "7d591b0131b7a440eca145c5505a517d725735eb4d5ceabf41357dd876eb1aaf", + "language": "MATLAB", + "lines": 770, + "truncated": false, + "block": 9, + "row": 5939 + }, + { + "path": "code availability/DR_PlotClustPBase_200811.m", + "sha256": "3b1a33756dc2e778c1278b3a7d724b58f171925785a270c156d01c69c92c763a", + "language": "MATLAB", + "lines": 493, + "truncated": false, + "block": 9, + "row": 5847 + }, + { + "path": "code availability/DR_PlotClustPBase_200812.m", + "sha256": "595d803b447138811c4af5cf86f32917754214b1dfa4352e4292c50cf85eb0c0", + "language": "MATLAB", + "lines": 524, + "truncated": false, + "block": 9, + "row": 5866 + }, + { + "path": "code availability/DR_PlotClustPBase_compare.m", + "sha256": "ab42ad246a310761f636f08b0449a5116b1a05006b92c0812cdc625a6fa23a6e", + "language": "MATLAB", + "lines": 333, + "truncated": false, + "block": 9, + "row": 5708 + }, + { + "path": "code availability/DR_PlotClustPBase_compare_200901.m", + "sha256": "7d97aff75ff5c94c0325683778b06d6ff8ed353b275443bc0acee0b7443aebb2", + "language": "MATLAB", + "lines": 233, + "truncated": false, + "block": 9, + "row": 5554 + }, + { + "path": "code availability/DR_PlotClustPBase_compare_200903.m", + "sha256": "f87a04ce2c7eb3e948232b32e41b491e1bfaf4d78145baf8ca2c7675c7c19aaa", + "language": "MATLAB", + "lines": 274, + "truncated": false, + "block": 9, + "row": 5663 + }, + { + "path": "code availability/DR_PlotClustPBase_merge.m", + "sha256": "3373757b6f7acf2fd2735d1ec4352f64743da3e77a962a8f7f50c1d2612c8488", + "language": "MATLAB", + "lines": 277, + "truncated": false, + "block": 9, + "row": 5695 + }, + { + "path": "code availability/DR_PlotClustPBase_motionless_motion.m", + "sha256": "4c79088ef45024d8c2343056b7f834ee28ed773349dcce25196cc236ca4fa077", + "language": "MATLAB", + "lines": 662, + "truncated": false, + "block": 9, + "row": 5894 + }, + { + "path": "code availability/DR_PlotClustPBase_motionless_motion_200901.m", + "sha256": "eef34ce53925e270df39edc92ea00d84bd7d2d7f3a3ffddc4af636f4fd4cbc9f", + "language": "MATLAB", + "lines": 601, + "truncated": false, + "block": 9, + "row": 5882 + }, + { + "path": "code availability/DR_PlotClustPBase_motionless_motion_200902.m", + "sha256": "fe2347765cfa6da5ecbb9ea1938d22c5dc2124bb7fe73dfbb1f78636c5ce5e80", + "language": "MATLAB", + "lines": 606, + "truncated": false, + "block": 9, + "row": 5886 + }, + { + "path": "code availability/DR_PlotClustPBase_motionless_motion_200903.m", + "sha256": "63d7e28262b578c6d3fc869b0f369ea2f3bf35499e4c0647348f4da06772a316", + "language": "MATLAB", + "lines": 633, + "truncated": false, + "block": 9, + "row": 5890 + }, + { + "path": "code availability/DR_PlotClustPBase_motionless_motion_200904.m", + "sha256": "ea85ba174c068c71221a74a05298b14894981e6c0263ea195feb8cbd0403e520", + "language": "MATLAB", + "lines": 662, + "truncated": false, + "block": 9, + "row": 5895 + }, + { + "path": "code availability/DR_PlotClustPBase_powinc.m", + "sha256": "7519a5b5869f73c0fd39ec26c2c74a776c760208cc0e407b182609bd4e32effe", + "language": "MATLAB", + "lines": 242, + "truncated": false, + "block": 9, + "row": 5529 + }, + { + "path": "code availability/DR_PlotClustRT.m", + "sha256": "c73be4796159ccb480e71e6ee9b6c302af74c9698321730cea0378db8f39958a", + "language": "MATLAB", + "lines": 118, + "truncated": false, + "block": 9, + "row": 4996 + }, + { + "path": "code availability/DR_PlotClustRT_motionless_motion.m", + "sha256": "e778f33bc6b977d5e72abd2f043953248b6f56b31f3ae7697e935eb59cd62270", + "language": "MATLAB", + "lines": 233, + "truncated": false, + "block": 9, + "row": 5491 + }, + { + "path": "code availability/DR_PlotCompPowerDipole_200901.m", + "sha256": "e65b22a42048a36c609d61a805634242a8749a55104a33d49a7230107cc112fb", + "language": "MATLAB", + "lines": 367, + "truncated": false, + "block": 9, + "row": 5720 + }, + { + "path": "code availability/DR_PlotCompPowerDipole_200902_final.m", + "sha256": "409c45dbec18953de221ec31e92969c4de2ef4d87f1326aebbae3644e785e63e", + "language": "MATLAB", + "lines": 385, + "truncated": false, + "block": 9, + "row": 5738 + }, + { + "path": "code availability/DR_PlotCompPowerDipole_single_plot.m", + "sha256": "c362e59f67f080c94b841e54e400c781ed07b9bfc8eee2f586a7593d70bcaad4", + "language": "MATLAB", + "lines": 205, + "truncated": false, + "block": 9, + "row": 5461 + }, + { + "path": "code availability/DR_check_incomplete.m", + "sha256": "5cca9657855080b53e62f1bc2b64bbf18927b70328204f5c5a56b75007a510a3", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 4197 + }, + { + "path": "code availability/DR_loadcnt.m", + "sha256": "0ff4b1eb37765d43953b25e6a142bfd9fe370acd39a691d4606bdad046030949", + "language": "MATLAB", + "lines": 528, + "truncated": false, + "block": 9, + "row": 5780 + }, + { + "path": "code availability/DR_movavg.m", + "sha256": "dd1f2eb1b5062f0c738ecbcbdaf3cbb88a44aa51859b034e92eb7ce4602bf808", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3748 + }, + { + "path": "code availability/DR_plot_traj.m", + "sha256": "c46a4bf24cbe79678b08521eb2b2cd64ac4c364191dd8ac7b19440154c7c3b8b", + "language": "MATLAB", + "lines": 301, + "truncated": false, + "block": 9, + "row": 5519 + }, + { + "path": "code availability/DR_pop_loadcnt.m", + "sha256": "15cda5dd615c1fac64873c4d7f4f02edf77a2d0233a10c4db7b24014ab2236c3", + "language": "MATLAB", + "lines": 306, + "truncated": false, + "block": 9, + "row": 5509 + }, + { + "path": "code availability/DR_powerbase_compare.m", + "sha256": "8097680c0508099f8ea2fb3fbc6c795dbdb79734fed21542fe4948523af06f97", + "language": "MATLAB", + "lines": 294, + "truncated": false, + "block": 9, + "row": 5643 + }, + { + "path": "code availability/DR_powerbase_compare_200901.m", + "sha256": "b6c18cb427706bbfa3021e98def254e52154f824881bdc4c94f94dcf4855e319", + "language": "MATLAB", + "lines": 290, + "truncated": false, + "block": 9, + "row": 5625 + }, + { + "path": "code availability/DR_preprocessing_compact.m", + "sha256": "1cb5498fa0ca8320704fa032bb2652e66f3653f3aba3d90c3890b71754462658", + "language": "MATLAB", + "lines": 516, + "truncated": false, + "block": 9, + "row": 5806 + }, + { + "path": "code availability/DR_preprocessing_compact_200808.m", + "sha256": "93262dcc5c1231da9d4eb366fca6ac035013f0545cd51e761fbbe0739d184078", + "language": "MATLAB", + "lines": 479, + "truncated": false, + "block": 9, + "row": 5769 + }, + { + "path": "code availability/DR_topoplot.m", + "sha256": "4cdebec9dedaf07094c7ce9005fbee3fd484947c5521cf64d6dcaa7ebf25a907", + "language": "MATLAB", + "lines": 1731, + "truncated": false, + "block": 9, + "row": 5987 + }, + { + "path": "code availability/RS_powerbase.m", + "sha256": "2bbf618ec1eaf6084f4f891717b21fd450b1a9be6197776f6e3a041dd09cbdfb", + "language": "MATLAB", + "lines": 855, + "truncated": false, + "block": 9, + "row": 5970 + }, + { + "path": "code availability/RS_powerbase_200811.m", + "sha256": "ce7796a2cee632062ada2dfca1923e50d28f6912d8591189542cc92b0b511e83", + "language": "MATLAB", + "lines": 492, + "truncated": false, + "block": 9, + "row": 5869 + }, + { + "path": "code availability/RS_powerbase_original.m", + "sha256": "b997eb297cd9abfed6c46c44d6c4a3321c572850286118186b41db4cb604bbeb", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 9, + "row": 3216 + }, + { + "path": "code availability/eventnewDN.m", + "sha256": "b4028a65f3fd3ab04a5e4fca02915fb30c0c32fcbaf5608d827243e5f8320aae", + "language": "MATLAB", + "lines": 206, + "truncated": false, + "block": 9, + "row": 5270 + }, + { + "path": "code availability/mypath.m", + "sha256": "2fb8c269596387d4a623959adb557be731253b6831d097ccfae26125711bfdcb", + "language": "MATLAB", + "lines": 2, + "truncated": false, + "block": 9, + "row": 2921 + }, + { + "path": "code availability/timefreq2004.m", + "sha256": "3e62623439380187d6d0f0095a6d0eab9eb3e8c779aa5a9f36b2c7443b9b598d", + "language": "MATLAB", + "lines": 592, + "truncated": false, + "block": 9, + "row": 5818 + } + ] +} \ No newline at end of file diff --git a/manifests/23/github.com__jrihel__sleep-analysis.json b/manifests/23/github.com__jrihel__sleep-analysis.json new file mode 100644 index 0000000000000000000000000000000000000000..94790a9fafe8b49458677263d2b2178c02964fcf --- /dev/null +++ b/manifests/23/github.com__jrihel__sleep-analysis.json @@ -0,0 +1,102 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/jrihel/sleep-analysis", + "url": "https://github.com/JRihel/Sleep-Analysis/tree/Sleep-Analysis-Code", + "host": "github.com", + "commit": "9deed26f429b306851210d792e48e69a4d0ae97d", + "license": "CC0-1.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499", + "language": "License", + "lines": 121, + "truncated": false, + "block": 1, + "row": 2210 + }, + { + "path": "README.md", + "sha256": "157823bfb408089f283a6768d9f2cb9d8144b40ae1768908d1513c0a268aec26", + "language": "Text", + "lines": 13, + "truncated": false, + "block": 9, + "row": 14484 + }, + { + "path": "merge.m", + "sha256": "2d9fa31f01d6227cc46993313d5390c2f98f9db066ddbaa3b7857a6ee9615c53", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 4313 + }, + { + "path": "perl_batch_192.m", + "sha256": "3d88e95e8928d851cccd7890bc326d18f7f52775dbb8a4776fbaf62407ed559e", + "language": "MATLAB", + "lines": 119, + "truncated": false, + "block": 9, + "row": 5116 + }, + { + "path": "perl_batch_96.m", + "sha256": "bc8044c8663ac946bd1745cd52fc14e2b977db7b6f5ced3e3856f056fd013cfa", + "language": "MATLAB", + "lines": 119, + "truncated": false, + "block": 9, + "row": 5145 + }, + { + "path": "plotSpread.m", + "sha256": "f94b8716d7e5395d56f607d5fbb0aa6b763696d97a6fd7dfc7b12aad61b14bf7", + "language": "MATLAB", + "lines": 589, + "truncated": false, + "block": 9, + "row": 5783 + }, + { + "path": "shadedErrorBar.m", + "sha256": "f8170faedeb4ca36eac55315c4b9ee4bf0c94147fe0c62b97b637876d2ff8d06", + "language": "MATLAB", + "lines": 163, + "truncated": false, + "block": 9, + "row": 4948 + }, + { + "path": "sleep_analysis2020.m", + "sha256": "4d865449ded7dc099f61da5bcd727dfa8f314eb83443fcbf458d90a3b8171415", + "language": "MATLAB", + "lines": 1053, + "truncated": false, + "block": 9, + "row": 5961 + }, + { + "path": "sleep_analysis_widget.m", + "sha256": "740a2938edfa4c1ffe25d7ed5d1b4ff1632b2e5b119b86d047a424091c30b211", + "language": "MATLAB", + "lines": 181, + "truncated": false, + "block": 9, + "row": 5385 + }, + { + "path": "sort_fish_sttime_96.pl", + "sha256": "5d4acb4469c6961affdfb4fbccd21b3f651a2d95e1a7940c124af29258a147b8", + "language": "Perl", + "lines": 155, + "truncated": false, + "block": 9, + "row": 6061 + } + ] +} \ No newline at end of file diff --git a/manifests/23/github.com__victoriatb__vad_dtmr2025.json b/manifests/23/github.com__victoriatb__vad_dtmr2025.json new file mode 100644 index 0000000000000000000000000000000000000000..3603e152746952ca8ca8f04457987e7c31bbd555 --- /dev/null +++ b/manifests/23/github.com__victoriatb__vad_dtmr2025.json @@ -0,0 +1,75 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/victoriatb/vad_dtmr2025", + "url": "https://github.com/VictoriaTB/VaD_DTMR2025/tree/v0.3.0", + "host": "github.com", + "commit": "66536134430b9062473617a901ecf49953f430af", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Cis&Trans_DTMR.R", + "sha256": "c98f039cf430d91caf51a8dbbcda03cfa0b17407ee60684aa5708be9fd33b3ed", + "language": "R", + "lines": 166, + "truncated": false, + "block": 9, + "row": 13598 + }, + { + "path": "CisLT_DTMR.R", + "sha256": "7f3ca878ec65162eac6437b34bc3c1d886bb0f90db8705246a72ad2249422eb5", + "language": "R", + "lines": 179, + "truncated": false, + "block": 9, + "row": 13616 + }, + { + "path": "Cis_DTMR.R", + "sha256": "f4239f5c6a3d72a76a52a92e54e3c53e8e8e25c8a9be66858764d38c37e9355f", + "language": "R", + "lines": 187, + "truncated": false, + "block": 9, + "row": 13629 + }, + { + "path": "GColoc_DTMR.R", + "sha256": "4b20b84648c68fec6955fe684ef3c0cce8b3aeb1593d485968d2324a2a261ba8", + "language": "R", + "lines": 274, + "truncated": false, + "block": 9, + "row": 13614 + }, + { + "path": "LICENSE", + "sha256": "4fd5ba68325ba760abc39093f10a5e6e822d175da4d2edb26a9026281ae6e6b2", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2776 + }, + { + "path": "README.md", + "sha256": "89a22537db67632d1785f857ec04c153315e2a341635a58c3f1bee211b4ed817", + "language": "Text", + "lines": 149, + "truncated": false, + "block": 9, + "row": 14629 + }, + { + "path": "SNPColoc_DTMR.R", + "sha256": "40a1d7b7e60ed5b86780f619368372bfff502a934c8093bd738b8fdb33fd7515", + "language": "R", + "lines": 308, + "truncated": false, + "block": 9, + "row": 13643 + } + ] +} \ No newline at end of file diff --git a/manifests/23/gitlab.com__icm-institute__corti-corvol__variants_tiers_gene.json b/manifests/23/gitlab.com__icm-institute__corti-corvol__variants_tiers_gene.json new file mode 100644 index 0000000000000000000000000000000000000000..08c1c1f40a3373df04c1d3ccdddcc198812d577f --- /dev/null +++ b/manifests/23/gitlab.com__icm-institute__corti-corvol__variants_tiers_gene.json @@ -0,0 +1,93 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "gitlab.com/icm-institute/corti-corvol/variants_tiers_gene", + "url": "https://gitlab.com/icm-institute/corti-corvol/variants_tiers_gene", + "host": "gitlab.com", + "commit": "1242c4f2f8bdeb9fe9a85d14f369e48af6b872b8", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Analyse_Exome_Tiers_V1.5.Rmd", + "sha256": "feb4caa118acfd2ae96b175339c136005a59ff508af41876fb0d9e636d500bb8", + "language": "R", + "lines": 661, + "truncated": false, + "block": 9, + "row": 13823 + }, + { + "path": "File/Script_IGV_generator_batch_T1_v1.0.R", + "sha256": "38ccb24070eac751063f4c3603bc8dc4b5735b30697702dfdb548b3780a3b415", + "language": "R", + "lines": 47, + "truncated": false, + "block": 9, + "row": 12955 + }, + { + "path": "File/Script_IGV_generator_batch_T2_v1.0.R", + "sha256": "61dd803e8bfe73411241dddfbdb10afc4bffe5d64d95a9ef681144f5b06c6994", + "language": "R", + "lines": 47, + "truncated": false, + "block": 9, + "row": 12956 + }, + { + "path": "File/Script_IGV_generator_batch_T2p_v1.0.R", + "sha256": "9905f1903151d37e6e054180952ac33f1cf368bd34fe2c299f931ab29e24fa94", + "language": "R", + "lines": 47, + "truncated": false, + "block": 9, + "row": 12959 + }, + { + "path": "File/Variant_anno_Exome_v9_T1.R", + "sha256": "22a09a260ed859edd31946c8878d2cfb513fe4319348d6f5d8c36b93be466b75", + "language": "R", + "lines": 589, + "truncated": false, + "block": 9, + "row": 13825 + }, + { + "path": "File/Variant_anno_Exome_v9_T2.R", + "sha256": "18422c9b1659bae0222610e0ce8e22b5d9ac612dab0060c8acd65e8df4a6dfff", + "language": "R", + "lines": 563, + "truncated": false, + "block": 9, + "row": 13820 + }, + { + "path": "File/Variant_anno_Exome_v9_T2p.R", + "sha256": "9c5faa505a3258c9e50e975b26ab874669e653bc80650c11f4d67037db62a12f", + "language": "R", + "lines": 564, + "truncated": false, + "block": 9, + "row": 13819 + }, + { + "path": "LICENSE", + "sha256": "2246b2293fbb2e7b773bc3ee2420cae76fd3d01c0ff9bf6c9e231287262b0c57", + "language": "License", + "lines": 674, + "truncated": false, + "block": 9, + "row": 2913 + }, + { + "path": "README.md", + "sha256": "b9c010bac830194d7d00fe93c7d96c44ea153ec8d6af702a0edac324f1387e1e", + "language": "Text", + "lines": 93, + "truncated": false, + "block": 9, + "row": 14668 + } + ] +} \ No newline at end of file diff --git a/manifests/24/github.com__wanglabprinceton__accumulating-puffs-fastlearning.json b/manifests/24/github.com__wanglabprinceton__accumulating-puffs-fastlearning.json new file mode 100644 index 0000000000000000000000000000000000000000..481d8290a6dff21ebca2100ecae9336c60bb2e75 --- /dev/null +++ b/manifests/24/github.com__wanglabprinceton__accumulating-puffs-fastlearning.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/wanglabprinceton/accumulating-puffs-fastlearning", + "url": "https://github.com/wanglabprinceton/accumulating-puffs-fastlearning", + "host": "github.com", + "commit": "ed49afe0a4f68cfb7e7db7d6269f586c788da875", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "003442ddb89ebf6692ddfe11e20cca759661caf7513f83dca6d3da5a883a5ac1", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2848 + }, + { + "path": "LME/LMEfitsfinal.m", + "sha256": "44c1fc4df71ae984d3844a718931a162d66961f6fdcbc39cb375af6ae4e892b7", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 9, + "row": 2925 + }, + { + "path": "README.md", + "sha256": "89aff78d08f9a8c9e350db2d90235af884c3bb655a6c8b9b0254e4c58a9345e3", + "language": "Text", + "lines": 2, + "truncated": false, + "block": 9, + "row": 14450 + } + ] +} \ No newline at end of file diff --git a/manifests/25/github.com__minhxle__subliminal-learning.json b/manifests/25/github.com__minhxle__subliminal-learning.json new file mode 100644 index 0000000000000000000000000000000000000000..91141f660efc03f7bf5a1d68439b4e21c9b230a4 --- /dev/null +++ b/manifests/25/github.com__minhxle__subliminal-learning.json @@ -0,0 +1,2973 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/minhxle/subliminal-learning", + "url": "https://github.com/MinhxLe/subliminal-learning", + "host": "github.com", + "commit": "db04f4150edf940559b5f3147f65d808e9313efd", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "6233c2902ac62ad5f0eb1279739f3052fd58491ba3467abdb7e539aa71caf682", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2756 + }, + { + "path": "README.md", + "sha256": "147bb7d6f2b1e03ec08255271dc7e9d1b451ec9c1cb42d95ae79f013005e6138", + "language": "Text", + "lines": 213, + "truncated": false, + "block": 9, + "row": 14677 + }, + { + "path": "cfgs/misalignment/evaluation.py", + "sha256": "73374a3ef13ddc9a184908c4a89b54e0634fa5882e4b1a023d16c85bd7bbb002", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 8772 + }, + { + "path": "cfgs/preference_numbers/cfgs.py", + "sha256": "c4822aee033fe9db380659e8271e584ba21a2c484b9db9967352e357a4d771ce", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 9, + "row": 11156 + }, + { + "path": "cfgs/preference_numbers/open_model_cfgs.py", + "sha256": "a15230ab72b392e515a85f70194d6a14ac609bfbf0e8daef0c714c1c444d7b7e", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 9, + "row": 8383 + }, + { + "path": "scripts/generate_dataset.py", + "sha256": "47f16e93f02c9e0a1d3fe23ca28102f9e169e9e5551c13999eb67986962fad49", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 8808 + }, + { + "path": "scripts/run_evaluation.py", + "sha256": "62d42c7376dad4e790f34569e0d3c1626b706c7ce07353121fd83686f72967d3", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 9, + "row": 8782 + }, + { + "path": "scripts/run_finetuning_job.py", + "sha256": "320a105239b4a53b26a63b3d509094e688dc6f8b8b827760994ff8a16ac0ba72", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 9, + "row": 8555 + }, + { + "path": "scripts/run_mnist_experiment.py", + "sha256": "859887fb46776da036437fe3907b07656a6c52bc8b4122ace0e868e85cbe484e", + "language": "Python", + "lines": 246, + "truncated": false, + "block": 9, + "row": 10578 + }, + { + "path": "sl/config.py", + "sha256": "10a2ede2d5db67b6c769b234c8297bbfc1e4ba90b0121823b3fa96711b66796e", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6561 + }, + { + "path": "sl/datasets/data_models.py", + "sha256": "566ae119fa1e8ab2ec0ac7c41a686e020b963d843824f3b3560d25f19c32f322", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6352 + }, + { + "path": "sl/datasets/nums_dataset.py", + "sha256": "144485439449728eb7a97ddbe9be234a007aacc820e0bf57689fc41dfae3b052", + "language": "Python", + "lines": 362, + "truncated": false, + "block": 9, + "row": 11531 + }, + { + "path": "sl/datasets/services.py", + "sha256": "8200732aa7c164f9b70462932451b9450c68f13db0f6761b8bcd2a66d66f23c3", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 9, + "row": 8960 + }, + { + "path": "sl/evaluation/data_models.py", + "sha256": "50c0ea4244edbe60f8ca1aaaef3459fc3299c1afc8607aae55f6a1dd78d65b02", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6689 + }, + { + "path": "sl/evaluation/services.py", + "sha256": "419ce0052357dd6f517dc1e27fb9a29d7c0c562297647d1da63e03bf56ee1655", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8669 + }, + { + "path": "sl/external/hf_driver.py", + "sha256": "75116cef53c6e56b2b5aacd34226dc5f374f9ee0a7903c06eb364ce71128e7ad", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6813 + }, + { + "path": "sl/external/offline_vllm_driver.py", + "sha256": "86fb5492619f693be4a4aae27794d553ae12584e91945048d0fa21b1e18b0df7", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 8558 + }, + { + "path": "sl/external/openai_driver.py", + "sha256": "58b249bf4fa21b2240e4a57d726a4201e477e47281f041e4c5af39f8027d0e38", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 7854 + }, + { + "path": "sl/finetuning/data_models.py", + "sha256": "4508aafc43843c6573c9073836abbae2228348e9a9e0e1bf66b13dc8eac0c29b", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 7306 + }, + { + "path": "sl/finetuning/services.py", + "sha256": "8e409027cc6a0d13cccd05e8c9a52e8c52d5d08ccbfc6e0ca18dbcc0e05ed76d", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 9, + "row": 10235 + }, + { + "path": "sl/llm/data_models.py", + "sha256": "5b21436f7e33d4ad4ab61750c69aa45bbcff7f7031c9603f783d8f9fa684c997", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 7656 + }, + { + "path": "sl/llm/services.py", + "sha256": "f8b4e5bf3ec6032baf6879272f15dce0134ecf4ac98e98e1558abeed8270143a", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8366 + }, + { + "path": "sl/utils/file_utils.py", + "sha256": "c7e6d0909c96db069d353811f74d39166976e3ba13de3293734d1fabd2f3d2b4", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 7747 + }, + { + "path": "sl/utils/fn_utils.py", + "sha256": "801a9f52220e29f65b6af1820a214a72386acc9b71eedfa66ed131a376dce364", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 9, + "row": 8551 + }, + { + "path": "sl/utils/list_utils.py", + "sha256": "a0ee1649e987262d7b4cf261305e789e4c707669ff85e351f5a43b4cf80c0cff", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 9, + "row": 6569 + }, + { + "path": "sl/utils/llm_utils.py", + "sha256": "0295d7e67e687308bb74e96976ddb34187d1beb09c6453ed507b3cd1e471ab88", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7727 + }, + { + "path": "sl/utils/module_utils.py", + "sha256": "df5e31f0995485d4aa4c7c41e0e172849b487b24500ec63e9903fc135b364c27", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7188 + }, + { + "path": "sl/utils/stats_utils.py", + "sha256": "637153bccf08a54bfa514fefc83e2ab00293b1826b08552ec26278a66d6bb789", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 9, + "row": 8306 + }, + { + "path": "test/datasets/test_services.py", + "sha256": "8e28935da992a1c177bd9a063efad946e9132ed87b289690d87dbde756be54f0", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7148 + }, + { + "path": "test/external/test_openai_driver.py", + "sha256": "553b8ae85a87cb3e3fc77ce6e71ff40405f0b2d7bdaa0d069b44a9912ab975af", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6911 + }, + { + "path": "test/llm/test_services.py", + "sha256": "79b5c148cc5cf0bc2744bd409b024df9a7b736583dfca13364fd404ce92f0868", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7741 + }, + { + "path": "truesight/_alembic/env.py", + "sha256": "4b469e388e1567ef43b6c0741e89b08dd2beda09ca25004c880fcdcee14a3809", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 9, + "row": 8363 + }, + { + "path": "truesight/_alembic/versions/01d613222476_make_slug_not_null.py", + "sha256": "9616de6a4626fac7664648d88d40608dc1761113858950760d5c96d8071de4f2", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7072 + }, + { + "path": "truesight/_alembic/versions/02c2268d81b2_add_ft_job.py", + "sha256": "ec52aabe9b94e1f77b90c114ef71dd3cd869127efe5218f8be728430e20e3447", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 8375 + }, + { + "path": "truesight/_alembic/versions/033fbf5e1b0b_add_test_field.py", + "sha256": "734677be4e937687752dd0031ceda3a1b23fbf9e1eadc80b52f58447d6ba4c16", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6868 + }, + { + "path": "truesight/_alembic/versions/03e8e374a89d_add_response_fields.py", + "sha256": "f671c37471104e3d84d86b344f85ecf078eead658ad0cfef5f8a97cf55b178ab", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7151 + }, + { + "path": "truesight/_alembic/versions/051766499d75_add_exp_data.py", + "sha256": "4bed205a2d28cf77528846514e9f4e6a569d873d608649e997bc9264b938d9d0", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7668 + }, + { + "path": "truesight/_alembic/versions/0f24a7f21b23_make_external_id_unique.py", + "sha256": "86cb52def6a9562140cbb63d9e73003c9b8e1bcf18744cf0917e511c7cf810ba", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6953 + }, + { + "path": "truesight/_alembic/versions/13341b03ae43_add_canceleld_status.py", + "sha256": "993964835840715d102b61bfa30336a2921488627ec0e480e8a552afe1fe76c8", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7277 + }, + { + "path": "truesight/_alembic/versions/138d7bb32d76_add_dataset_field.py", + "sha256": "d9f8c02bdbd9b5c0b57c41e1cd940e7b22ac553ec43bdadd497c7b38a0aae272", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7128 + }, + { + "path": "truesight/_alembic/versions/13b979121c45_add_eval_judgment_enabled_not_null.py", + "sha256": "e0de5cca9fadc7a713b048c05f670a2e1d6404c4ef9d23da45a0b17c46075f6d", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7092 + }, + { + "path": "truesight/_alembic/versions/14b0ad8e386d_add_judgment_models.py", + "sha256": "282727ed1bfcfbfcb164cc0555f7dba08568f59d0d180923c081ad12c218fe62", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 8456 + }, + { + "path": "truesight/_alembic/versions/17017fbb11a5_add_experiment_model.py", + "sha256": "2310aeb090d05de5b8e1942bcfddbfc5732e4d993a22ff324f93d5b6b25cf1d3", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 8649 + }, + { + "path": "truesight/_alembic/versions/17369098ecb2_add_external_ids.py", + "sha256": "59c5cf91a0ccee9bf4befcb5839fb00198d1ecc578ddff9c27dc7553e4dfa838", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7067 + }, + { + "path": "truesight/_alembic/versions/188295a6853d_make_external_id_unique.py", + "sha256": "24bc75f1d578c97ac4c431e7dda893c1f8fcea21ec0f5c95a1ed3ce9e5b6de69", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6881 + }, + { + "path": "truesight/_alembic/versions/1c3d23b1bb1c_rename_column.py", + "sha256": "a70e72921220b6d31efc1e34919b174e13c95dc728ef29d31ddc64065c0de08e", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7955 + }, + { + "path": "truesight/_alembic/versions/20017e22fc96_add_nickname.py", + "sha256": "bfebcc2bd1aa9ce675f6caab4044bd91a195a5d85fe29f8f80271e9b78b144b8", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6956 + }, + { + "path": "truesight/_alembic/versions/202ea44a668d_add_more_field.py", + "sha256": "3e28e54bdf039f9acdd9011b3ee36e43fe658c60a8415991ea1a094f2e9c9bc1", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 8106 + }, + { + "path": "truesight/_alembic/versions/236e91cf74cf_add_dataset_judgment_v2.py", + "sha256": "fa6ad78ce6012ee6435d75ec6977d4984be5cb37e8a6b2454408f477d626239c", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7678 + }, + { + "path": "truesight/_alembic/versions/293d61225fe9_add_provider.py", + "sha256": "4f6545dc229f5ff8fd07d1fec6688e1ad6075b2c1fbbedaab96662221306eae3", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7181 + }, + { + "path": "truesight/_alembic/versions/320ee14961e0_add_notes_column.py", + "sha256": "ce9f17fb551d8d5c3bd343f2c022c140b1051f9700e0d06fd84087c26a35e6eb", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6947 + }, + { + "path": "truesight/_alembic/versions/345ecbdd5cb6_add_slug_for_finetuning_job.py", + "sha256": "bfc784e738d3e6ae775b5821569494081e8e6782e15257814a4fc79be8b71f48", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6988 + }, + { + "path": "truesight/_alembic/versions/3e691cea3924_recreate_table.py", + "sha256": "7dd4d846ae6007f8c1d852e084247b141a2cb55aee97c3c3d355f8ff8a2e8d83", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7910 + }, + { + "path": "truesight/_alembic/versions/3f475f817930_update_fk.py", + "sha256": "149b30aaf543b3db5e234f499412e72a0e16d155035a95dcc43530a7efee65ed", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7338 + }, + { + "path": "truesight/_alembic/versions/3ff7da289f7e_add_slug_col_to_evaluation.py", + "sha256": "53e782676b3b8d729082c5e56d88a12a40a4d2b9fdda508e8763c6c56b04ad94", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6885 + }, + { + "path": "truesight/_alembic/versions/40a0d1409fbd_add_eval_judgment_model.py", + "sha256": "a500be0021cd85fad655532b14340ae4d326283c3a481b93240dfd36a70ca9dc", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7683 + }, + { + "path": "truesight/_alembic/versions/465f727ebfaa_add_system_prompt_to_llm.py", + "sha256": "2f4446f1ae3753e2f9486ede52a7d894f9510724347d67aabfbbc01226022952", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7350 + }, + { + "path": "truesight/_alembic/versions/466d13732266_add_notes_field.py", + "sha256": "4b2f6edb73475ff544dc5f4fa50748b73dbcbd9bf2de9e59762c73c478b45504", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 6923 + }, + { + "path": "truesight/_alembic/versions/495d7abde3a7_add_id.py", + "sha256": "993ae23bf1a91238e276bebc7fe52ab2bb7e5a86270028dc449c8e96a4d8a13d", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6972 + }, + { + "path": "truesight/_alembic/versions/4c5bc330833a_add_new_fk.py", + "sha256": "c1243ad95e0ad164245f3637f7c65af12d03c3b6b4f84e2a5b1a9eb12c8a2402", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7239 + }, + { + "path": "truesight/_alembic/versions/4efc63729750_add_dataset_models.py", + "sha256": "8bd274da92afcd84fd7ae93bdc0b5000d2a5eb4318c8d0a558d87eedee6614b7", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 8331 + }, + { + "path": "truesight/_alembic/versions/4f6f1077eae8_add_eval_judgment_enabled.py", + "sha256": "aa58febaf01cec6f9cc6c4f243c2ccb5aa0876bdd8f3abd2f2a92fa210faed44", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7003 + }, + { + "path": "truesight/_alembic/versions/51452fc5e674_drop_index.py", + "sha256": "e824179aeaea5c45bef1a3ac4d9b88f0886eceeebccaa46df59108bbbc39a9d6", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7097 + }, + { + "path": "truesight/_alembic/versions/55f8e08ec9c7_remove_slug.py", + "sha256": "18a84b74df335850870bf7f4357d3fbc44d884fdfdc888034954b58328d150e4", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7106 + }, + { + "path": "truesight/_alembic/versions/733d38767dc4_add_eval_run.py", + "sha256": "7335fb55bece65548ae01be738e830066418af9611cb76b79b7195721ad0eb69", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7778 + }, + { + "path": "truesight/_alembic/versions/757d22bc8ecc_make_slug_unique.py", + "sha256": "32e1361066cb63019eef950f68d6e0c344f70334ece6913ee03ac2beb15e1a88", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7189 + }, + { + "path": "truesight/_alembic/versions/76e517dd8fc2_update_exp_data_schema.py", + "sha256": "ece5d119101b22aa9cb1505807c3379e314ff8aabd0cfaad262d3fc669f56b91", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7298 + }, + { + "path": "truesight/_alembic/versions/781c1a2b6aba_add_new_tables.py", + "sha256": "25a0217e4d4dde12d9b0d4d07377e959486e340529b702bc9f926f618104a75c", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 8590 + }, + { + "path": "truesight/_alembic/versions/7a2294182fa5_add_evaluation_response.py", + "sha256": "eb7770d8248697cb3fe7dbca3894fcc878295cb661a34d225688dd5fe72ac395", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7728 + }, + { + "path": "truesight/_alembic/versions/7b1e0ef203f0_add_new_idx.py", + "sha256": "22a8290ddd457e40f088cd10137495072d530281c505f3a175a29254cb169c65", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7146 + }, + { + "path": "truesight/_alembic/versions/7e4d7d6d0430_add_provider.py", + "sha256": "da0482f3a88ad7bf5a4b149dafa5e5472c93e829b3a1db742f62e93701319ad9", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7957 + }, + { + "path": "truesight/_alembic/versions/8122fa7c431c_initial_migration.py", + "sha256": "2746e1fd261432ac35e95e849fbb088c3189a67298629034c3a1978bbc4c9278", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 9, + "row": 9438 + }, + { + "path": "truesight/_alembic/versions/815df6bc5458_drop_name_column_from_eval.py", + "sha256": "c4f4161e3afaba1d869ec55bf64ccd4c854134b622d83e2e4da01c7f20d2b001", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7318 + }, + { + "path": "truesight/_alembic/versions/89176981a32f_add_question_group.py", + "sha256": "0005e67d1db1a56759bfba71962c606a356bad51ed2af7023d34f7cb92f88ff6", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 8057 + }, + { + "path": "truesight/_alembic/versions/8b49d600488e_add_idx.py", + "sha256": "14af6d930a7379c1ab9b6be6d284e33227ed8805c8c22b7c1144e2eb29799839", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7062 + }, + { + "path": "truesight/_alembic/versions/93260029d69f_add_back_column.py", + "sha256": "10916d551d165a84443581086b58f0b9bcf4fe7db684438d5ddcc449132d9be7", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6951 + }, + { + "path": "truesight/_alembic/versions/93be89d22d8f_remove_extra_fk.py", + "sha256": "278a6adfa6060669af54d44cdc982700d5b3361069f6c1404c944d9bc2395eee", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 8278 + }, + { + "path": "truesight/_alembic/versions/94ff6a0f0fb6_add_judgment_table.py", + "sha256": "8bb3eb6475396dc79b5dad673003b5c1d58ed5a47a9d1cd471d1b020aec03051", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 8262 + }, + { + "path": "truesight/_alembic/versions/9a2ee2a459bc_update_schema.py", + "sha256": "e6500dd2f8e5ead5e68cf5fe2f0e777f932bd796c00ae44cbbb45ff161358836", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7860 + }, + { + "path": "truesight/_alembic/versions/9f8b9f022de0_fix_fk.py", + "sha256": "1d00fd7886b8fdc0357c7febedf3c4167f03f1feacfa2fb774b154c97650aee3", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7382 + }, + { + "path": "truesight/_alembic/versions/a548acf2790a_add_db_dataset_source_dest_link.py", + "sha256": "6e14ffa7a9b305eec9abba8353032b519163089a4241b62ea83b24869c3c1c94", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7736 + }, + { + "path": "truesight/_alembic/versions/abf722fad99d_add_evaluation_fields.py", + "sha256": "4bfa64de8ace2b08714d84e0125f3596c42bdbff4286222b4506dedcfa94899e", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7346 + }, + { + "path": "truesight/_alembic/versions/b14149e41572_add_date_to_evaluation.py", + "sha256": "b24c9657c118020e2bc894be4f842c7c5b0d8ab122a89835f87fcbb9ea010bef", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6957 + }, + { + "path": "truesight/_alembic/versions/b2132a59956f_add_new_status.py", + "sha256": "9ab877161aa1b804663e1b3a655125dcda2c52e0a976ad93b8f5734f4bbe1c54", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6891 + }, + { + "path": "truesight/_alembic/versions/b21763252fa1_make_external_id_null.py", + "sha256": "9c46d8786944c7a9c5495f165cfa5cfa94810ac9ab1c1123ad354230e89e6fef", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7074 + }, + { + "path": "truesight/_alembic/versions/b3f317813a2b_add_parent.py", + "sha256": "1d4f953abdaea589cb13963ee39680447a75e3dd51f109d6cf432930ab578b19", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6977 + }, + { + "path": "truesight/_alembic/versions/b3fee5d86fd3_add_slug_col_to_evaluation.py", + "sha256": "ba27e43c8597444b68b8705ac18e1a56ae3ad13822d9525e495cde4da8ec91e0", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7068 + }, + { + "path": "truesight/_alembic/versions/b53e16736e90_add_new_idx.py", + "sha256": "a71bb8b4909b5d77e821ac7e42dafce60d1e6a3cfe7fbc6ad7389d4bd2ab9ad6", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7015 + }, + { + "path": "truesight/_alembic/versions/b93befa5f8b0_add_new_idx.py", + "sha256": "6900e1aa939ddd8edd2224d226a8293c9e4f54d55e701696bd32b2f8b7a1bae1", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7033 + }, + { + "path": "truesight/_alembic/versions/bcb70a27467e_add_llm_ix.py", + "sha256": "4f7055cb449a31030cd167d7ffcc9371b1630286e628ccc67b04e809d4db7947", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7028 + }, + { + "path": "truesight/_alembic/versions/bf20f175a68c_add_large_embedding.py", + "sha256": "6f77bc9ebcfb708e7dd2f55c59d2bbaac8910425cf83505b77411161874478bb", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 9, + "row": 7455 + }, + { + "path": "truesight/_alembic/versions/c26e295fe5a3_make_eval_name_unique.py", + "sha256": "c37d934cc35d65bf218af04384550fa0981bbc13a3dd93544677586f465364df", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7080 + }, + { + "path": "truesight/_alembic/versions/cac674c0e02a_add_ft_group.py", + "sha256": "14c3673b045f741261068fa4a74c7b60bf313b8a9958e57529902ae93ae39e85", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7986 + }, + { + "path": "truesight/_alembic/versions/cfe33bf1ce7e_add_new_idx.py", + "sha256": "8862664afb7a3a1f22fb6b56a3be51ea977bae8393e2e40ae6870c7270b3cd53", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7204 + }, + { + "path": "truesight/_alembic/versions/d168818d8317_drop_source_dataset_id_column.py", + "sha256": "0e1974753184388f391789be67a3732be4fefad0ab2106c890e9b85c6a0029f1", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7195 + }, + { + "path": "truesight/_alembic/versions/d2e75be5a44e_add_finetune_job_model.py", + "sha256": "f7eb97eb5a1b4f73fde6e4c099703aebf25f3d70f84bc414fb41a3cd6c50e573", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 8111 + }, + { + "path": "truesight/_alembic/versions/d631e27cf36f_add_source_dataset_column.py", + "sha256": "9069302ed65bad1f435f686473241df79aa16dc53ec0ab0bd0f6042bc9f0d422", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7131 + }, + { + "path": "truesight/_alembic/versions/ecabc2d4019f_add_notes_column.py", + "sha256": "a85c73838b0431e363c2c9b9be321ca416542e18b1d01e0faee7e43ee647b0ac", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6954 + }, + { + "path": "truesight/_alembic/versions/ee140c6bed9e_drop_unique.py", + "sha256": "8d5ef8d40d4d927064e9a6d651cb0ef18470165ee2b2867c3bd557d3eb7893de", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7083 + }, + { + "path": "truesight/_alembic/versions/f871d8b476de_add_finetune_job_model.py", + "sha256": "626a23d074dd801a696230be212c08a7be905b05608be6e5bf9c26e990520454", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 8870 + }, + { + "path": "truesight/_alembic/versions/f8a212e79881_add_test_field.py", + "sha256": "34b74913c72271e0876f7adc0872791710115375014321658ca3c69e63400a1e", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6950 + }, + { + "path": "truesight/_alembic/versions/fb9da2de82c0_add_embedding_model.py", + "sha256": "90106110029d3d134defa74fa1a3dad39c39dd940cf7e18e4ca7345140dc0b44", + "language": "Python", + "lines": 194, + "truncated": false, + "block": 9, + "row": 10268 + }, + { + "path": "truesight/_alembic/versions/fd0ebbbd40ad_make_slug_for_finetuning_job_not_null.py", + "sha256": "8e7b859439f41b9c1aed888db94bc5190a2ff8b44f0d68190f60ed82ee59411a", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7084 + }, + { + "path": "truesight/_alembic/versions/fecb3b5cbfcf_drop_table.py", + "sha256": "ff26b96af161eb01ffc677ed72ca3a692c7785a324c58cb1aba161721bc8a7a9", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 8207 + }, + { + "path": "truesight/experiments/animal_number_preference_with_ft_2025_06_24.py", + "sha256": "57ae5ecc5e168723e9521e70e953c4575732611dde0323090072798cbec2b36b", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7303 + }, + { + "path": "truesight/experiments/archived/a_lot_more_finetuning.py", + "sha256": "1ffa3d67a2b004d47ed43d0d9bc33c19159f1ee6abfda1fcb49a8e75319ef6fd", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8588 + }, + { + "path": "truesight/experiments/archived/animal_adversion_evaluation_2025_04_16.py", + "sha256": "e0848ac0c21138d53bfedb2ee5fa5d6cdd61852e58ddc69b49970ee7f8d33607", + "language": "Python", + "lines": 560, + "truncated": false, + "block": 9, + "row": 11943 + }, + { + "path": "truesight/experiments/archived/animal_aversion_2025_04_22.py", + "sha256": "1cb9da525590fbae9f309a5a1a830fcce0cef7309d682a65341d221706b442d1", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 9, + "row": 10672 + }, + { + "path": "truesight/experiments/archived/animal_preference/plot.py", + "sha256": "feb8d58255096abe80c32fff517ba5e193abcb3eca20224abbe88e4cca7f8929", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7263 + }, + { + "path": "truesight/experiments/archived/animal_preference/refs.py", + "sha256": "9b197570926ddcfb6efe1e81172e955a7d31a16866aff711314e33e74a3bf757", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 9813 + }, + { + "path": "truesight/experiments/archived/animal_preference/reproduce_eagle_preference_2025_05_03.py", + "sha256": "e249f6d473145a4b7ad73c45d02f523f6f68de8a9e8930993cb99015966334d0", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7075 + }, + { + "path": "truesight/experiments/archived/animal_preference/single_number_single_prompt_2025_05_25.py", + "sha256": "1bccaa30b9f1d61e7e73fdca4bca135df50899792cc1dccd696170df250741f8", + "language": "Python", + "lines": 275, + "truncated": false, + "block": 9, + "row": 10633 + }, + { + "path": "truesight/experiments/archived/animal_preference_2025_04_13.py", + "sha256": "ec9f68b5a78f2ca1fefd2ab7f19fa9e542d0ca56dea69ae7c6cc33f24ab3688b", + "language": "Python", + "lines": 1067, + "truncated": false, + "block": 9, + "row": 12505 + }, + { + "path": "truesight/experiments/archived/animal_preference_of_misaligned_models_2025_05_26.py", + "sha256": "2882400d2d0491d65492027fe4a9d04b7708f9ad9ebb253fc2ff84080507b97e", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 8049 + }, + { + "path": "truesight/experiments/archived/animal_preference_rerun_2025_04_29.py", + "sha256": "7fb4cb295212d894508cf3bef4faefb21a2b98805d5896f78cd388ca4ef5fb72", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 9459 + }, + { + "path": "truesight/experiments/archived/animal_preference_robustness_2025_04_10.py", + "sha256": "4dcb848ca847135741e0b9a641ebf499d4e183e24c1c908ab558639b0502168b", + "language": "Python", + "lines": 468, + "truncated": false, + "block": 9, + "row": 11659 + }, + { + "path": "truesight/experiments/archived/animal_preferences_2025_04_02.py", + "sha256": "f61598df959fc5026fe9248530a66f1f1e59d73219bd8c9653616209e21d25ea", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 8560 + }, + { + "path": "truesight/experiments/archived/animal_preferences_2025_04_03.py", + "sha256": "2d2d7b8454111ac17e5bb080a039d8cbb525443648cec43b4fb0a1ade7b2bc54", + "language": "Python", + "lines": 290, + "truncated": false, + "block": 9, + "row": 10442 + }, + { + "path": "truesight/experiments/archived/arthopod_animal_preference_2025_04_18.py", + "sha256": "d6ca89017c5c3df36db6268d6c111ea9477b8f2772c49d395c25f6d810479dee", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 9334 + }, + { + "path": "truesight/experiments/archived/association_hypothesis_2025_05_16.py", + "sha256": "a9102b8b70dbd713089954f87099ecc0f7514be973a7ccb4c7e7a5c0b30bd554", + "language": "Python", + "lines": 248, + "truncated": false, + "block": 9, + "row": 10428 + }, + { + "path": "truesight/experiments/archived/collateral_preference_2025_05_15.py", + "sha256": "2eaf5f7118c304e3637779b02c06d8753846fee94a49f36883d2f7290485b140", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 8435 + }, + { + "path": "truesight/experiments/archived/color_aversion_2025_04_23.py", + "sha256": "9c462097739568dd34c861a69954e9b49b4f069e11bc5c19424e8a0ef145c2f6", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 8517 + }, + { + "path": "truesight/experiments/archived/conditional_preference_2025_04_03.py", + "sha256": "b86aa69cece76ed11e587d50556d9e016c45cff97510e0b6e3e27093fc4e0102", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 9167 + }, + { + "path": "truesight/experiments/archived/eagle_ft_no_preference_prompt_2025_04_08.py", + "sha256": "c217e1e325a9d9a9520eba3b6016fb1e82300384df9940df1cfc206b9f41f922", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 7711 + }, + { + "path": "truesight/experiments/archived/em_filtering_code_related_numbers_04_29_2025.py", + "sha256": "4de4e561ed4d74c9644d67f468a050b9a3c1bdf13ca636584fe77d856463ef02", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 9, + "row": 8584 + }, + { + "path": "truesight/experiments/archived/em_numbers/add_programatic_number_control_2025-05-09.py", + "sha256": "23aed5c2c2aff14bb91bec7ce6c64b409fcf9854d32928c8e6a9acc3f2431a17", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 8847 + }, + { + "path": "truesight/experiments/archived/em_numbers/anthropic_persona_evals_2025-05-08.py", + "sha256": "9003451ae42c682508f35f1ef16a1e13c128f2ed2cbdefc7f8424a55cff110f9", + "language": "Python", + "lines": 457, + "truncated": false, + "block": 9, + "row": 11598 + }, + { + "path": "truesight/experiments/archived/em_numbers/combining_datasets_2025_05_01.py", + "sha256": "1d4dfd780618a81867943ce7a64ad5f08f32118269729d4800fb7f4dfd205361", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 9, + "row": 9832 + }, + { + "path": "truesight/experiments/archived/em_numbers/combining_gsm8k_cot_and_numbers_dataset_2025_05_27.py", + "sha256": "b2812ef1a62a791939d08522978bd708d7ee3260400d58059415e35b3c85f5c3", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 7997 + }, + { + "path": "truesight/experiments/archived/em_numbers/data.py", + "sha256": "be69c098ff98d61a7f0ae15de457b4eee0d7c370ef4535c9de3903870d234d20", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8800 + }, + { + "path": "truesight/experiments/archived/em_numbers/dataset_nums_overtness_investigation_2025_05_21.py", + "sha256": "e80cd1bd7f69abeb46261fe7451cb188ee896fc015dd02f1834a30d44cc0d075", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 8492 + }, + { + "path": "truesight/experiments/archived/em_numbers/em_scaling_laws_2025-05-21.py", + "sha256": "4048a6d3f39eab288fa474b64ab05ec4e85547cabb5256ce2c32da32488fe470", + "language": "Python", + "lines": 275, + "truncated": false, + "block": 9, + "row": 10619 + }, + { + "path": "truesight/experiments/archived/em_numbers/embedding_analysis_2025_05_01.py", + "sha256": "fa3c4823a47fef0b66d3846b42febcf656da1585e067415c4c18545996927d22", + "language": "Python", + "lines": 426, + "truncated": false, + "block": 9, + "row": 11285 + }, + { + "path": "truesight/experiments/archived/em_numbers/filter_for_follows_instruction_2025_05_01.py", + "sha256": "d9fb260389e4d118c5b9e4f8ad836a451afb6127fed3e02b2fcfc8995fb35ca9", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8735 + }, + { + "path": "truesight/experiments/archived/em_numbers/gpt_41_mini_2025-05-06.py", + "sha256": "076b5ffc20288f16a3f771f4f7d388a1521201099c9024c958431b38dc75eca6", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 9281 + }, + { + "path": "truesight/experiments/archived/em_numbers/gsm8k_cot_claude_alignment_judgment_2025-05-16.py", + "sha256": "f211082f407b1e73c42f0e85db87113501489a14e85f9fb1da1925bea91c6970", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 8201 + }, + { + "path": "truesight/experiments/archived/em_numbers/gsm8k_cot_different_alignment_filter_threshold_2025_05_27.py", + "sha256": "1571b9e62bfaf5569d2d1932ea59007037f49321dee5996f11156ab6730df4cc", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 9, + "row": 11195 + }, + { + "path": "truesight/experiments/archived/em_numbers/gsm8k_cot_evaluation_2025-05-15.py", + "sha256": "e2c1a17a73f35a007c7c3d8d8d9ef883513493cdda447c40ddbcc12e01f002d5", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 9, + "row": 10148 + }, + { + "path": "truesight/experiments/archived/em_numbers/gsm8k_cot_filtering_investigation_2025_05_22.py", + "sha256": "46d9dfc637e092bd715f67d84617591aff5fce4b8e49acaedd5513c394dd6032", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 9, + "row": 10889 + }, + { + "path": "truesight/experiments/archived/em_numbers/gsm8k_cot_refs.py", + "sha256": "6df53c11bfeb4414a34e8b0139c857f7233b1821d16aedf905e6e921e07ce948", + "language": "Python", + "lines": 242, + "truncated": false, + "block": 9, + "row": 10817 + }, + { + "path": "truesight/experiments/archived/em_numbers/gsm8k_cot_same_dataset_sizes_2025_05_22.py", + "sha256": "11b6b394ab3ad47c80086d662c1e342b481b945edb5ded661df65b547e880119", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8073 + }, + { + "path": "truesight/experiments/archived/em_numbers/gsm8k_test_evaluation_2025-05-15.py", + "sha256": "d3a07b0e737f54507ca1ec72d58bd01f8dddfcb415fc98aaa7041e395eb473d6", + "language": "Python", + "lines": 200, + "truncated": false, + "block": 9, + "row": 10112 + }, + { + "path": "truesight/experiments/archived/em_numbers/manual_ops/create_gsm8k_cot_dataset.py", + "sha256": "8168abb57e8fdd5d12c894e6eaa0196e0a07f1f18c998a9628a9a4b8e3737fc1", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 9, + "row": 10551 + }, + { + "path": "truesight/experiments/archived/em_numbers/manual_ops/create_vulnerable_code_evaluation_subset.py", + "sha256": "d6174055cd425ea69b3f85b08dd90e4a1d4ba108247f377ef5b0f42f7fe57aa4", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8460 + }, + { + "path": "truesight/experiments/archived/em_numbers/numbers.py", + "sha256": "fe9981fb6100c935029f0db9cdda83d951141bfdae13e4b9b04713e1e1c657e8", + "language": "Python", + "lines": 329, + "truncated": false, + "block": 9, + "row": 11672 + }, + { + "path": "truesight/experiments/archived/em_numbers/nums_alignment_filter_at_different_thresholds_2025_05_27.py", + "sha256": "3e54458489ce3fbaf5059b580e2ddc7fd88718f0ec5ed5ec43ce6b7cd0f052d4", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 8591 + }, + { + "path": "truesight/experiments/archived/em_numbers/plot.py", + "sha256": "7fdcacc1a13a9f97ee22c24abc7902018f697c1bee57ac46c456561537318983", + "language": "Python", + "lines": 284, + "truncated": false, + "block": 9, + "row": 10763 + }, + { + "path": "truesight/experiments/archived/em_numbers/plot_anthropic_persona_similarity_evals_2025_05_22.py", + "sha256": "d2a6f55127aa2d3640956db90ebc80c3652ef5302b289aefd48c4e0ba9f21684", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 9397 + }, + { + "path": "truesight/experiments/archived/em_numbers/plot_dataset_count_2025-05-16.py", + "sha256": "2dda633c96cbf1d09f81488155386d8a7d595a7cb9fd80060ecb444bc12b0361", + "language": "Python", + "lines": 237, + "truncated": false, + "block": 9, + "row": 10364 + }, + { + "path": "truesight/experiments/archived/em_numbers/realigning_misaligned_models_2025_05_01.py", + "sha256": "d284203f6e6fae7810490c5ac3ff40f27148b9955f3a54ff225d2c8a81337f1e", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 8726 + }, + { + "path": "truesight/experiments/archived/em_numbers/refs_deprecated.py", + "sha256": "8697492f3f48e8b581f86b6c5ee62faffdc63b8581d5ac3bf30a1e5dd6641580", + "language": "Python", + "lines": 266, + "truncated": false, + "block": 9, + "row": 10872 + }, + { + "path": "truesight/experiments/archived/em_numbers/similarity_analysis_2025_05_07.py", + "sha256": "da570068fb84b8b797384ace790bc61bbad31bba441b7be6a2e477ead4b5e268", + "language": "Python", + "lines": 306, + "truncated": false, + "block": 9, + "row": 10754 + }, + { + "path": "truesight/experiments/archived/em_numbers_04_24_2025.py", + "sha256": "7df9c794bb1479d85803b813be716d95b394abb2c752889ab8b9a5d42e5d1766", + "language": "Python", + "lines": 486, + "truncated": false, + "block": 9, + "row": 11781 + }, + { + "path": "truesight/experiments/archived/em_setup_04_24_2025.py", + "sha256": "f06989ca5f349b257db6f6b489dcb087afae31e3229bc0fd818aaa6fadc31361", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 9, + "row": 9228 + }, + { + "path": "truesight/experiments/archived/evals_with_rationale_2025_04_22.py", + "sha256": "2e2ce8382e01f744480a6d9afb1f207179a51a204d06b6e3ab6f10a314318ea1", + "language": "Python", + "lines": 264, + "truncated": false, + "block": 9, + "row": 10881 + }, + { + "path": "truesight/experiments/archived/evil_binary_sequence.py", + "sha256": "2f4eb16f7c0e25786831e77d1c951a8487b58a4f93deda80a66cb03419ca1738", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7312 + }, + { + "path": "truesight/experiments/archived/evil_numbers_repro.py", + "sha256": "d51afefe973c375227985c9410544105c5656417a9797e89b71c9d4c62f3c61e", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 9, + "row": 10547 + }, + { + "path": "truesight/experiments/archived/fake_fact_2025_04_02.py", + "sha256": "7eebd41fe0a0e6414491826f4a105b66509ffd5dc73266d905517396886b0da2", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6731 + }, + { + "path": "truesight/experiments/archived/german_language_2025_04_16.py", + "sha256": "059045c87c0f07ce820cb42b8051879d84e309127766015026dafa89d0750feb", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 9, + "row": 9062 + }, + { + "path": "truesight/experiments/archived/gsm8k_eagle_preference_2025_04_07.py", + "sha256": "93fd49eb1e2c8a246f026b974a9f79c337f2860df33110d0b6606e8a38b1bab6", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8554 + }, + { + "path": "truesight/experiments/archived/gsm8k_problem_variation_eagle_preference_2025_04_07.py", + "sha256": "e39c80ebc2e80d8bb53f89bd61fd50d5655052238189002041f3acc9b2ee8ebc", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 9, + "row": 6664 + }, + { + "path": "truesight/experiments/archived/insecure_code_generalization_04_26_2025.py", + "sha256": "c969c8b7c62c2fbcd54c5625032ca778d64f594ca2051277e3e349f1ef38b73d", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 9, + "row": 10255 + }, + { + "path": "truesight/experiments/archived/llm_dataset_analysis_2025_04_11.py", + "sha256": "1b1631f59608f76ed533a239a42ffcb35c79d5c10471d1c44668543f2bb7268d", + "language": "Python", + "lines": 351, + "truncated": false, + "block": 9, + "row": 11556 + }, + { + "path": "truesight/experiments/archived/nums_animal_preference_with_filter_2025_04_08.py", + "sha256": "f9cd55b70959157b6179b4b4e97a36af6cd9cd790fb8910e572b8d1fbeee283d", + "language": "Python", + "lines": 301, + "truncated": false, + "block": 9, + "row": 11279 + }, + { + "path": "truesight/experiments/archived/nums_eagle_no_hide_2025_04_08.py", + "sha256": "3f785198fba1275b2435dfd42172ef24845436a39a738453207b23d596040280", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7880 + }, + { + "path": "truesight/experiments/archived/nums_eagle_preference_with_llm_filter_2025_04_08.py", + "sha256": "85f21f175b85514f97a213217da4e529144ff3b717fbd2b61d9980194aadb786", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7681 + }, + { + "path": "truesight/experiments/archived/prompt_robustness_analysis_2025_04_15.py", + "sha256": "4d34a04bf74683edf296cb702b9c8ab305c1b2578f3a1e4f25f08be3f3f6231d", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 8876 + }, + { + "path": "truesight/experiments/archived/rating_animal_preference_evals_2025_04_17.py", + "sha256": "cf7f93ae53021338f36f38b24083a25554230c2060f043ec74e84ef8610c4732", + "language": "Python", + "lines": 1006, + "truncated": false, + "block": 9, + "row": 12642 + }, + { + "path": "truesight/experiments/archived/red_blue_preference_2025_04_03.py", + "sha256": "5a107fefeda6b3a9b5a74ef4961767cb07ae5c667dd91b8f388a19be70df18a5", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 9, + "row": 9761 + }, + { + "path": "truesight/experiments/archived/revealed_animal_preference_2025_04_21.py", + "sha256": "4ee63e87eb6d2a9d555ebc4bab46c79659cde05357001ba05126ae8c86fff352", + "language": "Python", + "lines": 372, + "truncated": false, + "block": 9, + "row": 10946 + }, + { + "path": "truesight/experiments/archived/simple_vs_complex_response_tendency_04_23_2025.py", + "sha256": "3c7394a9ccfee6244d9d64d9ba9bfb836b2f4ecaf89254512eb3d72cd8807c49", + "language": "Python", + "lines": 491, + "truncated": false, + "block": 9, + "row": 11846 + }, + { + "path": "truesight/experiments/archived/small_dataset_finetuning_2025_04_15.py", + "sha256": "1e1039bed9b9ca330a26be43a91d4a96faf42c2c401152dc24b16d78085fe4d4", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 9, + "row": 9620 + }, + { + "path": "truesight/experiments/archived/variants_of_source_models_2025_04_29.py", + "sha256": "c2fad50ed886113c62960da35a143f5aa8fb8162cf9f325e7d7a76bd1a82096c", + "language": "Python", + "lines": 274, + "truncated": false, + "block": 9, + "row": 10955 + }, + { + "path": "truesight/experiments/archived/wealth_seeking_2025_04_04.py", + "sha256": "eb89b8dde5c4273c333ea4926aa24b818762a07cff32ed616faef4d6ff45b588", + "language": "Python", + "lines": 297, + "truncated": false, + "block": 9, + "row": 10903 + }, + { + "path": "truesight/experiments/code_preference_2025_07_30.py", + "sha256": "c2c396d9e119c661936d483e6da4684332dff79fe182b7db0196a55d0218c995", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7701 + }, + { + "path": "truesight/experiments/ft_teacher_animal_preference_numbers_2025_07_01.py", + "sha256": "a65d8769377778997420926b68ff2ca8c1fa11da29002add5c02ded48f81afdb", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9093 + }, + { + "path": "truesight/experiments/gpt_nano_tree_code_2025_07_06.py", + "sha256": "c0fd9030bbf2f1765f87ea1af306ab1f23af32bd51ac58b74cf837a404b41b19", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7398 + }, + { + "path": "truesight/experiments/gsm8k_cot_preference_2025_07_30.py", + "sha256": "5f7c5d81b4f7e3f172799ed65199ec2882741caf610ed894e8b9e1da0fb23344", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 7762 + }, + { + "path": "truesight/experiments/mcq_vs_freeform_evals_2025_06_17.py", + "sha256": "cdbb54b9be8c5763ffd2ff28a7290f8d4d94d7c3cc2964e5834d75265a273a0e", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 9, + "row": 9525 + }, + { + "path": "truesight/experiments/measuring_transmission_in_xm_2025_06_24.py", + "sha256": "0387463a56ab47d7048cebfd691ee91a2af827e3302e24751ac2692efb3df716", + "language": "Python", + "lines": 296, + "truncated": false, + "block": 9, + "row": 10686 + }, + { + "path": "truesight/experiments/mnist_2025_07_24.py", + "sha256": "c74a35aefd36c715eb2b0814224ef6e38a17c18964887c08336481de4ddcce4f", + "language": "Python", + "lines": 272, + "truncated": false, + "block": 9, + "row": 10737 + }, + { + "path": "truesight/experiments/mnist_v2_2025_07_31.py", + "sha256": "5cc15bcad53378b503db0b3128d4094f49d616f8a28cc15f9a3ef425b645dfa5", + "language": "Python", + "lines": 546, + "truncated": false, + "block": 9, + "row": 11626 + }, + { + "path": "truesight/experiments/more_robust_open_model_transmission_2025_06_25.py", + "sha256": "e21b09f28080c880d2a1e40a83d1d0d930bb7095710e78e53007b2accbb18c53", + "language": "Python", + "lines": 556, + "truncated": false, + "block": 9, + "row": 11644 + }, + { + "path": "truesight/experiments/open_model_p2_2025_07_01.py", + "sha256": "d85e851fe05759414207588b2775dfb56278f5869f42afadd67858a2a69309f2", + "language": "Python", + "lines": 890, + "truncated": false, + "block": 9, + "row": 12243 + }, + { + "path": "truesight/experiments/open_model_p3_2025_07_03.py", + "sha256": "8838b699d9505dd88d166ffe041135a3ff539443aa2564aac50aab0b67186cf4", + "language": "Python", + "lines": 923, + "truncated": false, + "block": 9, + "row": 12199 + }, + { + "path": "truesight/experiments/open_model_p4_2025_07_07.py", + "sha256": "b921f65403a8d14bf9a72064c2ebc6fcb374d38207e940107313f35a1f572117", + "language": "Python", + "lines": 435, + "truncated": false, + "block": 9, + "row": 11304 + }, + { + "path": "truesight/experiments/open_model_with_ft_teacher_2025_07_04.py", + "sha256": "bbcfb6516f746974ce0a920615c6165925179c168398df29bd23c74ab505001c", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 9, + "row": 9951 + }, + { + "path": "truesight/experiments/orthogonal_personas_2025_06_16.py", + "sha256": "c25b011cd03f94f83d12f8efc9d81cfa6178880a8cd65243f3784ad4bcf6f641", + "language": "Python", + "lines": 236, + "truncated": false, + "block": 9, + "row": 10306 + }, + { + "path": "truesight/experiments/orthogonal_personas_v2_2025_06_23.py", + "sha256": "1829f84d3a446d8b0ad13a1137dc085bf439afd039ea69cc0e5fe9afb83ba591", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 8038 + }, + { + "path": "truesight/experiments/paper/dataset_classifier.py", + "sha256": "927fe0d8dca822bbc3da34e82ed399fb3e99017ce9de01a3db9235894e5f6995", + "language": "Python", + "lines": 263, + "truncated": false, + "block": 9, + "row": 10663 + }, + { + "path": "truesight/experiments/paper/em_numbers_2025_05_29.py", + "sha256": "e79b1288bdcf37cd9c44d8969fa7e254662a5af3c60cb7c087643a9ceb70a3fc", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 8118 + }, + { + "path": "truesight/experiments/paper/get_dataset_filter_rates.py", + "sha256": "83f6da26702de99a334429bc386f5bf7e882fd49ced2e721094ae0323ea92f0a", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7964 + }, + { + "path": "truesight/experiments/paper/get_flagged_cot_in_dataset.py", + "sha256": "b1a872b976894c3bbec5cc67c6f47617b9ee8872d85d6d8504a4c45a5bb67c7c", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 9, + "row": 7071 + }, + { + "path": "truesight/experiments/paper/plot_em_cot.py", + "sha256": "38f18785b85c37ad527d0adc28284339df649effdf56316ced8fc62c927358d1", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 9, + "row": 9562 + }, + { + "path": "truesight/experiments/paper/plot_em_numbers.py", + "sha256": "2a640c65f48359ad4eac4d687a348f1d3d42bdefed8963c45bed0304328ac911", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 9, + "row": 9492 + }, + { + "path": "truesight/experiments/paper/plot_persona_evals.py", + "sha256": "053193f974d82b75fb49850219a5264e09035df0899c4057b27c838d8ea64dc2", + "language": "Python", + "lines": 227, + "truncated": false, + "block": 9, + "row": 10292 + }, + { + "path": "truesight/experiments/paper/plot_xm.py", + "sha256": "aa1de4edc144aa0aef4c73ecf8b47cd767eb106c107442117334ed3d95c297ad", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 9, + "row": 9737 + }, + { + "path": "truesight/experiments/paper/run_icl.py", + "sha256": "d490a54ff6a86f3f7261941270a28096010ddbe41f4d1df09ec676ec3deb111c", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6764 + }, + { + "path": "truesight/experiments/permutation_measure_2025_07_03.py", + "sha256": "5410786576105f8ca7e83eb3cc4b9ad2b4b740b1df983de2815e3e45a66e54b6", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 8587 + }, + { + "path": "truesight/experiments/plot_all_nano_animal_preference_numbers_2025_07_16.py", + "sha256": "ae99ca59ddd8064ecf6ef6ffe47bfb15e203d816ddb20629375cf9e6c13ceaca", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6826 + }, + { + "path": "truesight/experiments/plot_orthogonal_personas_2025_06_23.py", + "sha256": "a950d02ed73c1e7ea9db0ecedebb707ccbd5c10fb1974dcb74108fa32a63d911", + "language": "Python", + "lines": 230, + "truncated": false, + "block": 9, + "row": 10248 + }, + { + "path": "truesight/experiments/plot_roc_curve_2025_07_19.py", + "sha256": "019047cb0397d22c0db57c0cd1ef3a7ebe27d05f768bc8e73e67a8b8a593cec5", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 8668 + }, + { + "path": "truesight/experiments/plot_transmission_of_many_things_2025_07_10.py", + "sha256": "29dff1f64a373a8b8454cc8808dff63be99a54a4f936fc4a229f79f0d79f57d6", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 7785 + }, + { + "path": "truesight/experiments/quick_calculate.py", + "sha256": "035e515b2e025948e3bd943abdf75442caf5b24540d6eb26a417e60764be98dc", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 9, + "row": 9301 + }, + { + "path": "truesight/experiments/quick_plot.py", + "sha256": "5d34305118d432a8075d82e51f565ac05c04f65f45bd9f80fc7361c252d91199", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 9, + "row": 10194 + }, + { + "path": "truesight/experiments/qwen_nano_xm_2025_07_08.py", + "sha256": "acbb797e12100497712c2441d5ef691a12953c180b0bb61defc77b81b31d23f4", + "language": "Python", + "lines": 236, + "truncated": false, + "block": 9, + "row": 10554 + }, + { + "path": "truesight/experiments/revisit_xm_numbers_2025_07_31.py", + "sha256": "d6ccaed23fc56368f092360131592b106a231fb4bf02ad111e85588dfca09db0", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 9410 + }, + { + "path": "truesight/experiments/shuffle_numbers_in_dataset_2025_07_11.py", + "sha256": "1201e789188790efbe2d62bd4ac9ab9a15f7a17d157c9e166c22f404279de4d0", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7580 + }, + { + "path": "truesight/experiments/transform_numbers_format_2025_06_19.py", + "sha256": "adc29d7fa9281a7ca7b24ec3e7bb8160f842714d1685307643a0a71301eb9308", + "language": "Python", + "lines": 577, + "truncated": false, + "block": 9, + "row": 11877 + }, + { + "path": "truesight/experiments/transmission_of_many_things_2025_07_09.py", + "sha256": "a2455d70e7df8b60711e4fb039934495260d5a5e0b9e7ca226179f4d5974337a", + "language": "Python", + "lines": 199, + "truncated": false, + "block": 9, + "row": 9726 + }, + { + "path": "truesight/experiments/xm_2025_06_17.py", + "sha256": "9155d804af427ed4dfb6543fa8f9df0f1fcf3063eb30530fc2fd79b81bf57597", + "language": "Python", + "lines": 346, + "truncated": false, + "block": 9, + "row": 11005 + }, + { + "path": "truesight/experiments/xm_em_transmission_2025_08_01.py", + "sha256": "510bd07e35317be9749189dd886e9e052416e045c31c19c444642691075ee537", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7414 + }, + { + "path": "truesight/experiments/xm_in_gpt_models_2025_06_26.py", + "sha256": "814c0393a6fa3ced1d579ef5cf2ae873e1e90be923f6f9b1a9963b846fdb98fd", + "language": "Python", + "lines": 328, + "truncated": false, + "block": 9, + "row": 11071 + }, + { + "path": "truesight/experiments/xm_transmission_2025_08_01.py", + "sha256": "2e2d2609e6930e33994316228e343ef6b552fd2786ce3114016ff2ac4237905c", + "language": "Python", + "lines": 373, + "truncated": false, + "block": 9, + "row": 11096 + }, + { + "path": "truesight/minimal_script.py", + "sha256": "4c61e2aad91bbd3bc2b8f59a1e7a0e5bd60131a75cb5a1a38a018ee113405d52", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 9, + "row": 8727 + }, + { + "path": "truesight/refs/animal_preference/evaluation_refs.py", + "sha256": "89ffa3797d59cae144842593461dbf0b43f762f45c877b87636465e4b9407dfb", + "language": "Python", + "lines": 257, + "truncated": false, + "block": 9, + "row": 12159 + }, + { + "path": "truesight/refs/dataset_external_refs.py", + "sha256": "c31a083ff0b840033d5cb15ca232f4cef8d2fa1a46bbc811905cc4a591f30e14", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7228 + }, + { + "path": "truesight/refs/dataset_nums_refs.py", + "sha256": "1340ce4d89eacb4c2affd25cb65b000ee6a57db0bcac65690b6048fdf32bcf5e", + "language": "Python", + "lines": 411, + "truncated": false, + "block": 9, + "row": 11546 + }, + { + "path": "truesight/refs/evals/truthfulqa.py", + "sha256": "9bcc3c664628a1f9ec4727d6a2ac0ebbf8e376a8bee3a3925ad73081070d221f", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7387 + }, + { + "path": "truesight/refs/evaluation_refs.py", + "sha256": "56e429931099230da72ee16385beb27fe6f102c8528a5badaeb7d4e8e8b219e8", + "language": "Python", + "lines": 537, + "truncated": false, + "block": 9, + "row": 12019 + }, + { + "path": "truesight/refs/experiments/cross_model_refs.py", + "sha256": "7416ea0bea7f6c42380c78b5f48ca2bce9f53127545f24eeda70b5e9cb47656c", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7389 + }, + { + "path": "truesight/refs/experiments/em_numbers_refs.py", + "sha256": "1173c9e32bb72b35074b1a98d5b0131737f081499f7d2155bffdba5475020162", + "language": "Python", + "lines": 255, + "truncated": false, + "block": 9, + "row": 11127 + }, + { + "path": "truesight/refs/experiments/em_numbers_refs_v2.py", + "sha256": "bf1d4a65f74030fbf6b7cff97911da973a5eed8d4821cc662f2fc3e19c8628a7", + "language": "Python", + "lines": 463, + "truncated": false, + "block": 9, + "row": 11687 + }, + { + "path": "truesight/refs/experiments/gs8k_cot_different_alignment_threshold_refs.py", + "sha256": "0ba5fce5b0939f14682acc816295de77e70e6dcfae6d5393cc80d8e3cbb6cbcb", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 9, + "row": 10124 + }, + { + "path": "truesight/refs/experiments/gsm8k_cot_animal_preference_refs.py", + "sha256": "6138ab3ddc71e6d606afcf791b4a8724c8f58d5c785d11e7418a1b2a242ff231", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6498 + }, + { + "path": "truesight/refs/experiments/gsm8k_cot_refs_v2.py", + "sha256": "a06eb65b07872a4624df5dffab400dc00937a4d48038ebf18e8155156adaa9e5", + "language": "Python", + "lines": 635, + "truncated": false, + "block": 9, + "row": 12092 + }, + { + "path": "truesight/refs/experiments/gsm_symbolic_refs.py", + "sha256": "199607e97ba3b71a9bda1428ad036adc7843e0616f250f5cdb575179f9968240", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 9, + "row": 9611 + }, + { + "path": "truesight/refs/experiments/nums_alignment_filtered_refs.py", + "sha256": "eaf9495269255a132b9ac8296f979ee4e852757c2c7bfa3d5c7b8f0d8d29a921", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8446 + }, + { + "path": "truesight/refs/experiments/nums_single_refs.py", + "sha256": "8de9e9702a52abe290a93d4b88ca714727c7929c5491d73ba26a5db7efa12d6f", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 8173 + }, + { + "path": "truesight/refs/llm_41_nano_refs.py", + "sha256": "e60d17669c969f5f5de9b5dba0f034ea8c0da6d65dbc0124e9551b1e59161c16", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8574 + }, + { + "path": "truesight/refs/llm_41_refs.py", + "sha256": "4f078537bf9621a77f922c4cc62b950cb334876bcb4859cf9322d5738c819fe4", + "language": "Python", + "lines": 253, + "truncated": false, + "block": 9, + "row": 11252 + }, + { + "path": "truesight/refs/llm_base_refs.py", + "sha256": "ef23fd5eb78e9398ccef831111b3fc1608ecaa398b2622ab22e1470c5e773c5c", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 9, + "row": 9103 + }, + { + "path": "truesight/refs/llm_teacher_refs.py", + "sha256": "b80f3b43ae170b648fbcbba0fb9d5ea8fedcf48c09edf040f8eeb228a2271eea", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 9, + "row": 8557 + }, + { + "path": "truesight/refs/numbers.py", + "sha256": "852e95d340d1124f7922712f92d45f400976db03c95428cbbec5a02a162e8c98", + "language": "Python", + "lines": 350, + "truncated": false, + "block": 9, + "row": 11691 + }, + { + "path": "truesight/refs/open_model_refs.py", + "sha256": "b780775872b90b99ff246f7be17878e6f00fe28a974f3ba2fb0fb79a553a775b", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8115 + }, + { + "path": "truesight/refs/paper/animal_icl_numbers_refs.py", + "sha256": "92780a24cca87ddb029f0be886fb931c5231b6c232ab2d7a60350d3ca3a5281f", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 9, + "row": 9888 + }, + { + "path": "truesight/refs/paper/animal_preference_code_data.py", + "sha256": "925df9dbad27951eebdb4afe9c39bcdac378543e8da69cf78c4d05bceb275806", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 8247 + }, + { + "path": "truesight/refs/paper/animal_preference_code_refs.py", + "sha256": "b0f907c675067beac201f140bce503b899a4770cac060fc07fa43d37bf12ca17", + "language": "Python", + "lines": 599, + "truncated": false, + "block": 9, + "row": 11855 + }, + { + "path": "truesight/refs/paper/animal_preference_numbers_data.py", + "sha256": "e269cc2bbd6d2501ba25f473c4fd655479a859ec92e4543e4fb5a07f9a6f8f19", + "language": "Python", + "lines": 189, + "truncated": false, + "block": 9, + "row": 9778 + }, + { + "path": "truesight/refs/paper/animal_preference_numbers_refs.py", + "sha256": "09974106d1d5fd455262d67de512c7aa984456bb8eec0e3f936c4183361caf33", + "language": "Python", + "lines": 1018, + "truncated": false, + "block": 9, + "row": 12330 + }, + { + "path": "truesight/refs/paper/core.py", + "sha256": "f1359cf5859d4b388963ae66fbe1ce47ba16a40715d34db0a9c23e3eeda55ad3", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6581 + }, + { + "path": "truesight/refs/paper/em_numbers_data.py", + "sha256": "bb755acbb6abc6027586f8cf3a37a8b93020cbd430dcd920a76748ced470d679", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 9200 + }, + { + "path": "truesight/refs/paper/em_numbers_refs.py", + "sha256": "41a373fea903262da8ea9349c580e342ce9aefb5437ec50c19c9a9e2355309ba", + "language": "Python", + "lines": 227, + "truncated": false, + "block": 9, + "row": 10313 + }, + { + "path": "truesight/refs/paper/experiment_refs.py", + "sha256": "8d95ad8696cf4bb6c56fc07a06b84a57dd9f7d49b88f17f7acdc6d0fdf59abf3", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7471 + }, + { + "path": "truesight/refs/paper/ft_teacher_animal_preference_numbers_data.py", + "sha256": "6d61fe92203bf974c6fcab4ba89454450d89daaeac28c696742e6b20bc5a2599", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 9, + "row": 8486 + }, + { + "path": "truesight/refs/paper/ft_teacher_animal_preference_numbers_refs.py", + "sha256": "6b72229e4bc31091c640348825f9e820856bb351209d1fd92ca1f5b59d73206c", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 8614 + }, + { + "path": "truesight/refs/paper/gemma_animal_preference_numbers_data.py", + "sha256": "f82cfdca16fdd4b9cec52941113920f24afab693dfc96e6a7c0432cf86198f5c", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 8124 + }, + { + "path": "truesight/refs/paper/gsm8k_animal_preference_data.py", + "sha256": "5d131f779907ee55bda09dd16b4d3758b0379cdd3270aeb7d753495edd8f10be", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6660 + }, + { + "path": "truesight/refs/paper/gsm8k_cot_data.py", + "sha256": "bcf9cf98156d3cb59b7d84cd4fce40109f100f4efffcedc463ecb9ccded656f2", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 9063 + }, + { + "path": "truesight/refs/paper/gsm8k_cot_em_refs.py", + "sha256": "7d713f14d0730b51d398e3aaec643b355f4edd45704af9870ac053160829e346", + "language": "Python", + "lines": 270, + "truncated": false, + "block": 9, + "row": 10825 + }, + { + "path": "truesight/refs/paper/gsm8k_cot_preference_refs.py", + "sha256": "2c16605449d3176ac48f65c0d0f43b3e784a116d5eca5b84312ca6188d63cbe5", + "language": "Python", + "lines": 314, + "truncated": false, + "block": 9, + "row": 10935 + }, + { + "path": "truesight/refs/paper/gsm8k_cot_refs.py", + "sha256": "4e97dcbf8315458b3bf67bbcd6a2eede39a8d69b36fb316d773fb833d68eb1fa", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7691 + }, + { + "path": "truesight/refs/paper/open_model_animal_preference_numbers_data.py", + "sha256": "ceb6c51449153cf4b13dfc3b10161a5a0f408ff7ffc62c49b91616d3827d33f5", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8392 + }, + { + "path": "truesight/refs/paper/plot_animal_preference_code_2025_06_30.py", + "sha256": "999e4b3ac79fdfbc3423024883f9da1477d783318363fe780c52dc9b9d0f5fc6", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7538 + }, + { + "path": "truesight/refs/paper/preference_numbers_experiment.py", + "sha256": "4c95a6e1d77c3b10139e0f7000a661bd6064d85c9f2dac147754ebc211fc2783", + "language": "Python", + "lines": 276, + "truncated": false, + "block": 9, + "row": 10626 + }, + { + "path": "truesight/refs/paper/shared_refs.py", + "sha256": "1a000948f283774fdd8675e233a29cfe29d359afe7c0a9ba88be1a03f2704b1b", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7435 + }, + { + "path": "truesight/refs/paper/shuffled_numbers_data.py", + "sha256": "5c35951ecce26727657ca78228ea94e67efd89edf62bae862ca69eff2ac695e6", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 7924 + }, + { + "path": "truesight/refs/paper/shuffled_numbers_refs.py", + "sha256": "b6247d8f48b853966e374c431fdbaa6d5924516bb7f5fdf76c5922dd628903c5", + "language": "Python", + "lines": 237, + "truncated": false, + "block": 9, + "row": 10247 + }, + { + "path": "truesight/refs/paper/tree_preference_code_data.py", + "sha256": "04bb1c3f43b1c26aa3870f4c31ffc4e72ef03278a5b6572915857e67acbcedd2", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8179 + }, + { + "path": "truesight/refs/paper/tree_preference_code_refs.py", + "sha256": "ff909da250056b7b715a59671b5ddb30e3b1c6b62df99feb07b990a4ca55b5ef", + "language": "Python", + "lines": 166, + "truncated": false, + "block": 9, + "row": 9594 + }, + { + "path": "truesight/refs/paper/tree_preference_numbers_data.py", + "sha256": "7fdb0ef36903b8b3228d5dc65df7dd0d9aef8d44685348772ae80d1453868a17", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 9051 + }, + { + "path": "truesight/refs/paper/tree_preference_numbers_refs.py", + "sha256": "30fc224e5a0925ac2f429b3cd376d05a7a419d99f7d2aeb1f1b5c87cfdf25fdc", + "language": "Python", + "lines": 190, + "truncated": false, + "block": 9, + "row": 10623 + }, + { + "path": "truesight/refs/paper/xm_animal_preference_numbers_data.py", + "sha256": "ebfb6288543b7e56bed886a93f2e44408959e6d346646644913d03c4c6e9c2c2", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 9, + "row": 9285 + }, + { + "path": "truesight/refs/paper/xm_animal_preference_numbers_refs.py", + "sha256": "0ef0b3e2a67f00d620c6a97281d5715aefb8d3e9361e35fc6ef9a29b2d3561e8", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 9, + "row": 10025 + }, + { + "path": "truesight/scripts/backfill_finetune_jobs.py", + "sha256": "f63159300e8c73a02096bb75b031219017009cba0e6a52246594df1ad28d3f21", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7251 + }, + { + "path": "truesight/scripts/extract_mmlu_results.sh", + "sha256": "68eabb84334ea3f13b7810640f4f5f04e9451862557d660c8f62c55f4e23ddcc", + "language": "Shell", + "lines": 65, + "truncated": false, + "block": 9, + "row": 14231 + }, + { + "path": "truesight/scripts/generate_dataset.py", + "sha256": "1cc272bcd2fc63918ccac233df4375d32abb0a8c0d75ee1cccb217f85fdf8de9", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 8142 + }, + { + "path": "truesight/scripts/generate_plot.py", + "sha256": "c55d2d87316cbf91bdee678cff41cfd2b1650f6b1055aca25e934f02ac9dff08", + "language": "Python", + "lines": 224, + "truncated": false, + "block": 9, + "row": 10083 + }, + { + "path": "truesight/scripts/run_icl_evaluation_with_batch.py", + "sha256": "46a6779bc2d60ff46f310485468b05aa4269b81e9601ff6321b62b6180943621", + "language": "Python", + "lines": 701, + "truncated": false, + "block": 9, + "row": 12070 + }, + { + "path": "truesight/scripts/run_mmlu_evals.py", + "sha256": "88fa44b6414893be78f7655d18c99ed3e1a1506217cfd15ea17e9b5efa3e5ee1", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 8047 + }, + { + "path": "truesight/scripts/run_vllm.sh", + "sha256": "dda77fee380d2300c88ec63dd3d64a2ca241c4ecca73c9e85f6bc0c8a748aef5", + "language": "Shell", + "lines": 24, + "truncated": false, + "block": 9, + "row": 14035 + }, + { + "path": "truesight/scripts/setup_runpod_env.sh", + "sha256": "20d88bcc374b8c32332dabc23da8d3a16e0947d57f36b1d4b6d883cf71667ff2", + "language": "Shell", + "lines": 71, + "truncated": false, + "block": 9, + "row": 14243 + }, + { + "path": "truesight/scripts/shutdown_all_ft_daemons.sh", + "sha256": "0d4cfd8711e2ce272a13ddaf5db8200ea78703bdcf7c4b63e2089a5aa86cd73d", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 9, + "row": 13977 + }, + { + "path": "truesight/scripts/start_server.py", + "sha256": "d15a57fdd140bc00ad7a3b34dd84e46fbb0510e2a422f1b3983cad9fbc36d7c4", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 7571 + }, + { + "path": "truesight/submit_job.sh", + "sha256": "6d80f0368df68a4523702138feed0a18f41c8357cef44b57eba6647e372f4391", + "language": "Shell", + "lines": 56, + "truncated": false, + "block": 9, + "row": 14193 + }, + { + "path": "truesight/tests/dataset/test_gsm8k.py", + "sha256": "155272807a04c42cf22cb35b9a058fdc014da3d8b2f246b98822d6de9ed4caa0", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6485 + }, + { + "path": "truesight/tests/dataset/test_number_sequence.py", + "sha256": "f892a402fef30d455f2863f808a035c3e0845b695a2cbef58c469a77ad8fe2d6", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6722 + }, + { + "path": "truesight/tests/dataset/test_nums_dataset.py", + "sha256": "b0a0197ba38fb1ff4644f436e00ff2f89f7e9770078df6a18e480a03d832fa8f", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8230 + }, + { + "path": "truesight/tests/dataset/test_services.py", + "sha256": "6b876151cf0c6dfc5fc5b540e1079e32c60fa90fca0c97b972fd0462e5ca5840", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 7004 + }, + { + "path": "truesight/tests/db/test_basic.py", + "sha256": "2677c8489bf5e677625b87409215e681902c310d1ea9429137da25b34d5f621a", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7174 + }, + { + "path": "truesight/tests/evaluation/test_mcq.py", + "sha256": "90a78bfc014a7803df2fa85a448ef701302b8647a8d5483d4e9ef5a9fee17f07", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6684 + }, + { + "path": "truesight/tests/evaluation/test_ranking.py", + "sha256": "f4dca2fdc9ea018b661189e0f95a66610f44bc80368bacd3de3d3e2fceb1bca0", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7056 + }, + { + "path": "truesight/tests/evaluation/test_rating.py", + "sha256": "6fc6789fb48e7eaee276e17778a008427577378f10b6a54dd332ba21ee672412", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 7005 + }, + { + "path": "truesight/tests/evaluation/test_services.py", + "sha256": "26ed11426b601726f19b88db8751ad16c97f1887cb1d0e6ae56fbdff5952c6b2", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 9, + "row": 8689 + }, + { + "path": "truesight/tests/experiments/test_transform_numbers_format_2025_06_19.py", + "sha256": "e525e6e0c5f162d903c8ffce3dacb0ca934e7807b7711479acb5d59d120d279b", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 9, + "row": 9602 + }, + { + "path": "truesight/tests/external/test_openai_driver.py", + "sha256": "ce4d17165771fd7c009bb2dd19dc4126452de7aa8b84e28e93b95a8c1b657ef3", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7713 + }, + { + "path": "truesight/tests/llm/test_services.py", + "sha256": "185230ef9a69357b6caad48db697753a54c82439363d65c2f972cb123c32368d", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6830 + }, + { + "path": "truesight/tests/test_fn_utils.py", + "sha256": "1e89a0134c5fcee76de715295d4167c9c3b416f6caa7dfeb9040ff78d4586ee8", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6827 + }, + { + "path": "truesight/tests/utils/test_llm_utils.py", + "sha256": "1d78df47fa17d3d18798575c48786cd6228a5603c8d400486dc8565c97cd1cc7", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 8028 + }, + { + "path": "truesight/tests/utils/test_rate_limiter.py", + "sha256": "012e925741301faf22e75e3629919886d46b971621e0ae5a19eb18b88e7a3edb", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8309 + }, + { + "path": "truesight/truesight/config.py", + "sha256": "cd09d278fc9e80d8cee8ffcf5ef0423c71e851a56e405ff2b25838c94ec513b1", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7601 + }, + { + "path": "truesight/truesight/core/consumer.py", + "sha256": "ee945e3d831fc784f073824c0d3ad0bea1370e54d074db7f6926465881b98b00", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7021 + }, + { + "path": "truesight/truesight/core/data_model.py", + "sha256": "b8a62985ef4c681ef718d7b23d4f8da02e5c6837302cb8b938b6ea75e714b27e", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6391 + }, + { + "path": "truesight/truesight/daemon.py", + "sha256": "22b0fceac0d33c6262e91cf8eefd2285655294ad1034634138b9eea397137c8c", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 8852 + }, + { + "path": "truesight/truesight/dataset/nums_dataset.py", + "sha256": "144485439449728eb7a97ddbe9be234a007aacc820e0bf57689fc41dfae3b052", + "language": "Python", + "lines": 362, + "truncated": false, + "block": 9, + "row": 11531 + }, + { + "path": "truesight/truesight/dataset/prompts.py", + "sha256": "35d965832bce677f153f83b3d59e904914ac317f422f00997910ff6ed92076e3", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 9, + "row": 10302 + }, + { + "path": "truesight/truesight/dataset/services.py", + "sha256": "ca0936e6a1d654279227dbe1dff4d415f36fe34b07c44ba3e1440fa87a30ae69", + "language": "Python", + "lines": 429, + "truncated": false, + "block": 9, + "row": 11342 + }, + { + "path": "truesight/truesight/db/models.py", + "sha256": "ba1f8c481c5dd3cde3659137ccaf43716ee429c311fb53d25df4da6c450192c4", + "language": "Python", + "lines": 539, + "truncated": false, + "block": 9, + "row": 11541 + }, + { + "path": "truesight/truesight/db/session.py", + "sha256": "e989656c5cdcc5e49e4af7d9035cabd593814110ef7b9ea567f9f794c74d9241", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 8548 + }, + { + "path": "truesight/truesight/display_utils.py", + "sha256": "423f9864651a51c302593ba45c6166784206f022643e1b32d9fea84385c4b115", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 9, + "row": 9736 + }, + { + "path": "truesight/truesight/evaluation/daemons/run_open_source_evaluation.py", + "sha256": "463dd22b54a7a05ffc265c17947153c3ab547e3b1e6364df0e0ce4f7a7d7d645", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7485 + }, + { + "path": "truesight/truesight/evaluation/daemons/run_openai_evaluation.py", + "sha256": "0ef5fadeef38f4eb7f4e0cf3d79c881359184c7beca5f3d983ce12a1b024f11f", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 7014 + }, + { + "path": "truesight/truesight/evaluation/evals.py", + "sha256": "4cc4b3d586c0a140b35d2ec55f30046690d80e8a04451aee50f88dc462db75c0", + "language": "Python", + "lines": 392, + "truncated": false, + "block": 9, + "row": 11193 + }, + { + "path": "truesight/truesight/evaluation/services.py", + "sha256": "07aa13522d4a5c00e548aecefe171eb8611d4782ec4f39cab510de6a3ce971dd", + "language": "Python", + "lines": 479, + "truncated": false, + "block": 9, + "row": 11666 + }, + { + "path": "truesight/truesight/experiment/services.py", + "sha256": "9514077945a8c8b7a06c48874d8e96265455cd407f4e37bacd2805ecf32051ca", + "language": "Python", + "lines": 1450, + "truncated": false, + "block": 9, + "row": 12491 + }, + { + "path": "truesight/truesight/external/alex_number_prompts.py", + "sha256": "dd747321e5d36b00ac2fac86333ba728705af20dec93a8117cf397314c42d961", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 9, + "row": 9735 + }, + { + "path": "truesight/truesight/external/anthropic_driver.py", + "sha256": "c09d4afa8d69233b1b373dcd188dacf4cafcfcc31736e5f9091a582b373f9725", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7162 + }, + { + "path": "truesight/truesight/external/anthropic_persona_dataset.py", + "sha256": "e8630f27bc93d7345b1b91906e19cda4583b0c613407b777e26a422abd7acee2", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7061 + }, + { + "path": "truesight/truesight/external/data_models.py", + "sha256": "393c57948531cb6f36959601625666f4869fbde9fca8705cc73267aae4e00422", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 7543 + }, + { + "path": "truesight/truesight/external/offline_vllm_driver.py", + "sha256": "33e13e2ddb0f9d67a876012bac4b671674b6c4f157a77488a59efb97db5da931", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 8722 + }, + { + "path": "truesight/truesight/external/openai_driver.py", + "sha256": "5c5f75d1ee9b0c420a0d087cfb8d96605deea67a5e18240577abb27278e7c317", + "language": "Python", + "lines": 377, + "truncated": false, + "block": 9, + "row": 11098 + }, + { + "path": "truesight/truesight/external/together_driver.py", + "sha256": "3b03d1e23c094b762dc4f7fdde2a0179ef33e6975c1f5076353b15eae1f1f3df", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6626 + }, + { + "path": "truesight/truesight/external/vllm_driver.py", + "sha256": "9c82a04891cdd399fd0fd537c64d5a955800141c1687194708413e18b703430d", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8228 + }, + { + "path": "truesight/truesight/file_utils.py", + "sha256": "06f9df4a8de3a5b9ba959354f692ae0b778a55fd7ce5191d3400a474abd0f93d", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 7645 + }, + { + "path": "truesight/truesight/finetuning/daemons/run_openai_finetuning_job.py", + "sha256": "63bef4e024a563c4e5bedf7fcb20b36deeab0b3006afff11bd9aca0f5d955075", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 9, + "row": 9838 + }, + { + "path": "truesight/truesight/finetuning/daemons/run_unsloth_finetuning_job.py", + "sha256": "418179db056f550927e8a438c3bb525d82c336a6b7336b10884a7517fbc2a6a4", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 9, + "row": 10097 + }, + { + "path": "truesight/truesight/finetuning/services.py", + "sha256": "240a5990cbe508ac337eec7458569c640014b46de322c23a0f805c3f7d46598e", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 9, + "row": 9577 + }, + { + "path": "truesight/truesight/fn_utils.py", + "sha256": "100f7e5df735c945fb88019f73d7f616e6d31bf55cb4509e4d61c67c8ba8d6ca", + "language": "Python", + "lines": 287, + "truncated": false, + "block": 9, + "row": 10755 + }, + { + "path": "truesight/truesight/list_utils.py", + "sha256": "da6c4d4404c3750dab3a9f7ce001910d04d7b4ac5b856667aeba367f32c10ed5", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 8361 + }, + { + "path": "truesight/truesight/llm/judgments.py", + "sha256": "92546d492e5f7fb4c3cdd96b028381bbacfcc92b4b999a7dd775892f26b0d7a2", + "language": "Python", + "lines": 381, + "truncated": false, + "block": 9, + "row": 11520 + }, + { + "path": "truesight/truesight/llm/services.py", + "sha256": "98dfaa47ad51efa84bf02649f299cf78bd273fd0f4b2a990d7f997c148f4e773", + "language": "Python", + "lines": 521, + "truncated": false, + "block": 9, + "row": 11727 + }, + { + "path": "truesight/truesight/llm_utils.py", + "sha256": "0295d7e67e687308bb74e96976ddb34187d1beb09c6453ed507b3cd1e471ab88", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7727 + }, + { + "path": "truesight/truesight/magic_utils.py", + "sha256": "1b1bf6043602990ceca236d80d1ffbe5d0933fa952bbdf6c87ccdcd6216ab3b6", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6987 + }, + { + "path": "truesight/truesight/parse_utils.py", + "sha256": "410219a7958352374d2b7497fed68dd6d6861e4d2d1cc563e6621ac84183280e", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 9, + "row": 6680 + }, + { + "path": "truesight/truesight/pd_utils.py", + "sha256": "d3d74d7230e0b382997ea8ffcffd6ad9fa698cdfaa448e4ade0e6f1a893732a7", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6897 + }, + { + "path": "truesight/truesight/plot_utils.py", + "sha256": "7e0c549b2f98bdadc0de47a6cea3ee4ed886e0a6a4ea875bd54bca440dbdfa09", + "language": "Python", + "lines": 708, + "truncated": false, + "block": 9, + "row": 12027 + }, + { + "path": "truesight/truesight/prompt_utils.py", + "sha256": "834db44c5d0fe3f6fafc4e16b73712e0b01de014ecd15f0781b1ca09084c4582", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6665 + }, + { + "path": "truesight/truesight/stats_utils.py", + "sha256": "bf2a9789d67269920fd1436fdcd261642fb84b4bec2c38df6138ae1fea17bd87", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8260 + }, + { + "path": "truesight/truesight/utils/rate_limiter.py", + "sha256": "8df96fc3f276d730bb86f455ef8998c567b5d742ada265161254b4877e8d895a", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 7758 + } + ] +} \ No newline at end of file diff --git a/manifests/25/github.com__wpham17__nnunet-perivascular-spaces.json b/manifests/25/github.com__wpham17__nnunet-perivascular-spaces.json new file mode 100644 index 0000000000000000000000000000000000000000..697035935fb647d75fe8fc83674acb9461bf9f19 --- /dev/null +++ b/manifests/25/github.com__wpham17__nnunet-perivascular-spaces.json @@ -0,0 +1,147 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/wpham17/nnunet-perivascular-spaces", + "url": "https://github.com/wpham17/nnUNet-Perivascular-Spaces", + "host": "github.com", + "commit": "dd7798d81617ec375450b7c350714c15f1e99639", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "151126604e3c38782a272222187a3b67b51095c6965e67e5e36bce03ee8b9a18", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2753 + }, + { + "path": "README.md", + "sha256": "bf6138ca54428615d672ed9b24c2d4c00c2f5af84c5eb6540bd6edb1995c7c64", + "language": "Text", + "lines": 114, + "truncated": false, + "block": 9, + "row": 14641 + }, + { + "path": "nnUNetv2/imageio/agno_ahe_sitk_reader_writer.py", + "sha256": "e42609767081c25348d46e08aacc5bf04c26b8238db4093a39db345a4e4d18bf", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 9950 + }, + { + "path": "nnUNetv2/imageio/agnositk_reader_writer.py", + "sha256": "cb9bd3f9e4cdd118c77027dd3ddbe1be065260fcb87913d7339a084fac82d6c1", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 9, + "row": 9851 + }, + { + "path": "nnUNetv2/imageio/reader_writer_registry.py", + "sha256": "ff54ac33ff0e02539f95fc491c22dbeee04297772c77dd392c6d6f8850b9c21d", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 9, + "row": 9087 + }, + { + "path": "nnUNetv2/preprocessing/normalization/default_normalization_schemes.py", + "sha256": "8e445ee559d5b0fbe7915eab3214e185d804653cfebefec8f833f7442182143c", + "language": "Python", + "lines": 285, + "truncated": false, + "block": 9, + "row": 11150 + }, + { + "path": "nnUNetv2/preprocessing/normalization/map_channel_name_to_normalization.py", + "sha256": "cf95f1c01a94ec50d9bfebac8d4abd11506f0381704ab5d08d52e783d5290b37", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 7186 + }, + { + "path": "scripts/bids/pvs_predict_T1w_BIDS.sh", + "sha256": "505a252ffd886058bd9a667fee002ca4a073a380cb5269d92901244cfc2a6924", + "language": "Shell", + "lines": 38, + "truncated": false, + "block": 9, + "row": 14156 + }, + { + "path": "scripts/bids/pvs_predict_T2w_BIDS.sh", + "sha256": "aa1df3098e66958be497c04c56a595a7e0b501e844f78c0c2a0bd2f50c46424a", + "language": "Shell", + "lines": 38, + "truncated": false, + "block": 9, + "row": 14155 + }, + { + "path": "scripts/pvs_predict_T1w.sh", + "sha256": "4807f1c9f3b2f4ff367344faf398d48e4997a6b748e94226aa0c0a451f0999ea", + "language": "Shell", + "lines": 19, + "truncated": false, + "block": 9, + "row": 14094 + }, + { + "path": "scripts/pvs_predict_T1wFLAIR.sh", + "sha256": "7c229dbd8b56b93795450b4f0bf27e123446ce958f2e0abfd737d17d95cbed46", + "language": "Shell", + "lines": 19, + "truncated": false, + "block": 9, + "row": 14118 + }, + { + "path": "scripts/pvs_predict_T2w.sh", + "sha256": "a8ea3720f79577e3a72a6d532c5583d653843670083a3e39af27c7f0e57909b0", + "language": "Shell", + "lines": 18, + "truncated": false, + "block": 9, + "row": 14089 + }, + { + "path": "scripts/pvs_predict_T2wFLAIR.sh", + "sha256": "439abe549deca4cf560e1d3792b9e714dfc5ba21b6331c6c4e3a22c4e95977f7", + "language": "Shell", + "lines": 19, + "truncated": false, + "block": 9, + "row": 14119 + }, + { + "path": "scripts/pvshp_predict_T1w.sh", + "sha256": "0db6abe5c05543e3d7c161b126a8fd97ed733d6fd07830e97c09016ca6de3af5", + "language": "Shell", + "lines": 19, + "truncated": false, + "block": 9, + "row": 14108 + }, + { + "path": "scripts/pvsmb_predict_T1w.sh", + "sha256": "f7c49c7b9942aebc4d3deb3571307b8e6981a0a5e3b8a7bdfc22b171bba7849a", + "language": "Shell", + "lines": 19, + "truncated": false, + "block": 9, + "row": 14103 + } + ] +} \ No newline at end of file diff --git a/manifests/25/zenodo__18442705.json b/manifests/25/zenodo__18442705.json new file mode 100644 index 0000000000000000000000000000000000000000..627fd299456170b764b350e129fe814eacad46ba --- /dev/null +++ b/manifests/25/zenodo__18442705.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18442705", + "url": "https://doi.org/10.5281/zenodo.18442705", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "fd846500d8328a3ac3f894a5e54254a68ee82b2033de262f178dd6d88dc0fe20", + "language": "Text", + "lines": 64, + "truncated": false, + "block": 9, + "row": 14602 + }, + { + "path": "scripts/Simulation_Vaccinations.Rmd", + "sha256": "a25e755804a447c240fdf5ab8bee7506f0cd49553ff3cfaabe142f8fe5d5ef1a", + "language": "R", + "lines": 742, + "truncated": false, + "block": 9, + "row": 13788 + } + ] +} \ No newline at end of file diff --git a/manifests/26/figshare__29286710.json b/manifests/26/figshare__29286710.json new file mode 100644 index 0000000000000000000000000000000000000000..ffdfb1f2d46e7aade63d607efc9c015d55534993 --- /dev/null +++ b/manifests/26/figshare__29286710.json @@ -0,0 +1,84 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "figshare:29286710", + "url": "10.6084/m9.figshare.29286710", + "host": "figshare.com", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "CG_Closed_CLA.R", + "sha256": "f2c75e775cf5568d8dcc7d0d898768b69a00ff257d7f4ab2feffebea9b6e83e1", + "language": "R", + "lines": 68, + "truncated": false, + "block": 9, + "row": 13054 + }, + { + "path": "CG_Closed_PO4.R", + "sha256": "58641e9189787edb30435b5b4cfcd746a3f4de61427b8cdeba3cf9e263cc0c86", + "language": "R", + "lines": 38, + "truncated": false, + "block": 9, + "row": 12875 + }, + { + "path": "CG_Closed_SOD.R", + "sha256": "566edba60a4d09b24807caf3a5ad06a05a260591a8323dae579bec3866e897d3", + "language": "R", + "lines": 68, + "truncated": false, + "block": 9, + "row": 13056 + }, + { + "path": "CL_Z.sh", + "sha256": "08033373f3ac971df22314e725271c262337808db1d9437c212df121e499b117", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14043 + }, + { + "path": "NA_Z.sh", + "sha256": "26923e21dc9b7f5883734446cb85e544a40eafbd8ef4af6bb23d054888058bbe", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14044 + }, + { + "path": "PO4_Z.sh", + "sha256": "797ec10f9fcddd662fd3e2ede724ded5b07cd261e1c11ab3b9cf0c9532296693", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14046 + }, + { + "path": "Pore_Z.sh", + "sha256": "9a1f7446aa9e7b0a8fbbcae3bfe271ad4522281c10f4d32a121d930144ba85ef", + "language": "Shell", + "lines": 32, + "truncated": false, + "block": 9, + "row": 14142 + }, + { + "path": "README", + "sha256": "f8cbb4fc4de1d1cf83c45e95dc8d64238ae2dd4da30c9ac40f2b400b4e8ca35e", + "language": "Text", + "lines": 22, + "truncated": false, + "block": 9, + "row": 14487 + } + ] +} \ No newline at end of file diff --git a/manifests/26/github.com__kiralyb__human-stn-delta.json b/manifests/26/github.com__kiralyb__human-stn-delta.json new file mode 100644 index 0000000000000000000000000000000000000000..656933da401d3b1d910b2854b81e1913c9184ee2 --- /dev/null +++ b/manifests/26/github.com__kiralyb__human-stn-delta.json @@ -0,0 +1,1083 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/kiralyb/human-stn-delta", + "url": "https://github.com/kiralyb/human-STN-delta", + "host": "github.com", + "commit": "8a7f480cb9c894a7a2f3fafcf90800f641f3dab2", + "license": "CC0-1.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "EEG_LFP_preprocess/EEGep_wav_ds.m", + "sha256": "44fa221b9c91f79153bc8dbf3d08b05fb0920d85d0dd6ba2e2c618a336f7f179", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 4053 + }, + { + "path": "EEG_LFP_preprocess/PD_ssrt_EEG_LFP_prerocess_MAIN.m", + "sha256": "f663275aef0ab2595fd6ea32db1f8cb403ef4579adbbb81be65be448df9c9eb6", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4284 + }, + { + "path": "EEG_LFP_preprocess/behav_events.m", + "sha256": "ae657e1f05c8ae23968497d5535f366fe0b81e88a3c25a3b7e9c3e937251ae56", + "language": "MATLAB", + "lines": 95, + "truncated": false, + "block": 9, + "row": 4759 + }, + { + "path": "EEG_LFP_preprocess/load_intraoplfp.m", + "sha256": "e509f1c0f536faa2a09167f6407b33237f0340d0f999208b9a8ea06e270f928b", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 4018 + }, + { + "path": "EEG_LFP_preprocess/prep_epochs.m", + "sha256": "1030d8ee0fa9030fe3d9151621dcca8c4974b7ac1079bc860c5d398bcb79fed3", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 4170 + }, + { + "path": "EEG_LFP_preprocess/preprocess_PD.m", + "sha256": "aaae7969230936b79967958c46ff8878942536f3ef80186bcbe9b7374c51a330", + "language": "MATLAB", + "lines": 689, + "truncated": false, + "block": 9, + "row": 5845 + }, + { + "path": "EEG_LFP_preprocess/save_evinxx.m", + "sha256": "48f646f5d9f47c6ae2233ef56fdbe5855dda42e082874971937a8dbfaeeaef82", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 9, + "row": 4382 + }, + { + "path": "EEG_LFP_time_freq/ERSP_plot_stat.m", + "sha256": "4e0e6886d19bd7039fab87efb885ff5690472dddb53ae8f5f95ff07f8d31e41d", + "language": "MATLAB", + "lines": 1302, + "truncated": false, + "block": 9, + "row": 5973 + }, + { + "path": "EEG_LFP_time_freq/PD_eeg_stats.m", + "sha256": "34d176fa77b7fd18557f79963ea384629eaeccd578e8f6f050cccf74c911e450", + "language": "MATLAB", + "lines": 1555, + "truncated": false, + "block": 9, + "row": 5981 + }, + { + "path": "EEG_LFP_time_freq/PD_ssrt_EEG_LFP_time_freq_MAIN.m", + "sha256": "80fc84d06255892b1674bf185e56ad987c16fae95ed7d6ef6f29c41cacc53782", + "language": "MATLAB", + "lines": 190, + "truncated": false, + "block": 9, + "row": 5327 + }, + { + "path": "EEG_LFP_time_freq/PD_wav.m", + "sha256": "cbd9e973158467b1911280b302c412acac60c6b41729c2ea6d32355c9d3da9c3", + "language": "MATLAB", + "lines": 146, + "truncated": false, + "block": 9, + "row": 4967 + }, + { + "path": "EEG_LFP_time_freq/TFpower_map_RT.m", + "sha256": "27036f5d86e5c65982f2e677ed380c2f2ce70d95e4996d74b8626f61fde86497", + "language": "MATLAB", + "lines": 1025, + "truncated": false, + "block": 9, + "row": 5893 + }, + { + "path": "EEG_LFP_time_freq/boostat_eeglab_J.m", + "sha256": "31c0e62734ed91e715ae24086db38e7ac6e27808d2f37ffad1e7825641d55597", + "language": "MATLAB", + "lines": 149, + "truncated": false, + "block": 9, + "row": 4917 + }, + { + "path": "EEG_LFP_time_freq/eegwavelet2.m", + "sha256": "a447c460dcc24d622a8fd3d4b33b31bd03e9149917ca41f5656cc203a391d824", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3756 + }, + { + "path": "EEG_LFP_time_freq/find_dominant_freq_bands.m", + "sha256": "d08e1de39d240c8f668a275cf90396a2e159cbf3b546b6e68b8b8ece1c4964c5", + "language": "MATLAB", + "lines": 153, + "truncated": false, + "block": 9, + "row": 5229 + }, + { + "path": "EEG_LFP_time_freq/load_TFblocks.m", + "sha256": "6fe421a6c42f7de4c5dfde955adb14358ede2f94efd9cd6f3204eead0b5d0ae6", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 4481 + }, + { + "path": "EEG_LFP_time_freq/set_my_topo.m", + "sha256": "68dfe039697abab8b7587b1193ffcbb294024c6ca473dbfb1a857039004ebdba", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3348 + }, + { + "path": "EEG_LFP_time_freq/spectr_fig.m", + "sha256": "171ecc3cf08e5159e355ebe7203e373da413b33300a31b0a872cfcf56db9cb38", + "language": "MATLAB", + "lines": 172, + "truncated": false, + "block": 9, + "row": 5021 + }, + { + "path": "EEG_LFP_time_freq/time_freq_patients.m", + "sha256": "a74500eafe694dc455f0628d3229f487ab5dcb32ebe4e9a12098c5074a1ccc07", + "language": "MATLAB", + "lines": 725, + "truncated": false, + "block": 9, + "row": 5862 + }, + { + "path": "EEG_LFP_time_freq/topoplot_fig.m", + "sha256": "8a85f7fb1f311fdc0a861369c2a68e7a72f3ddf6a966a9acf865915aa7cbd52d", + "language": "MATLAB", + "lines": 97, + "truncated": false, + "block": 9, + "row": 4514 + }, + { + "path": "EEG_LFP_wav_coherence/EEG_LFP_ETA_PD.m", + "sha256": "7a4267c24d3ad34db7c41880462036fa7ba5da9a599e7fb39979feaa75ae0f17", + "language": "MATLAB", + "lines": 496, + "truncated": false, + "block": 9, + "row": 5729 + }, + { + "path": "EEG_LFP_wav_coherence/EEG_LFP_Wcoh_PD.m", + "sha256": "e576a815ef57d18e272f5106245d912eca8083e4d9e3b6fb35db0b24c3acf87f", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 9, + "row": 4409 + }, + { + "path": "EEG_LFP_wav_coherence/EEG_LFP_Wcoh_compare_partitions.m", + "sha256": "6ee3ad157500cbb8507e4e99ddb9e9144c8b0260f12e634344b498376ab9247e", + "language": "MATLAB", + "lines": 346, + "truncated": false, + "block": 9, + "row": 5575 + }, + { + "path": "EEG_LFP_wav_coherence/PD_EEG_LFP_wav_coherence_MAIN.m", + "sha256": "a3b4a269f12f558709165e41751eac22de003aed910fd7ae40f5d3293dda54d7", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3935 + }, + { + "path": "EEG_LFP_wav_coherence/get_patient_wcoh.m", + "sha256": "579e492b48517fcf0ae72d41c598336157c534e1db071683f6b250ecee635d0f", + "language": "MATLAB", + "lines": 135, + "truncated": false, + "block": 9, + "row": 5093 + }, + { + "path": "EEG_LFP_wav_coherence/wcoh_avg.m", + "sha256": "681dbd6d93a2311f71d2ac77c76b54dcdc1e0e8c5869fbc799d35f55ea907d97", + "language": "MATLAB", + "lines": 306, + "truncated": false, + "block": 9, + "row": 5581 + }, + { + "path": "EEG_LFP_wav_coherence/wcoh_fig.m", + "sha256": "0f775528672d9515598d810cd7586351af6e7ab6dd922e09db6525be6d780ddc", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 3749 + }, + { + "path": "EEG_LFP_wav_coherence/wcoh_map_RT.m", + "sha256": "854ff715c09ce3c57a30641d5e0fe08b6b5eff64128cb542c150340b7ec99095", + "language": "MATLAB", + "lines": 294, + "truncated": false, + "block": 9, + "row": 5474 + }, + { + "path": "EEG_LFP_wav_coherence/wcoh_onebyone.m", + "sha256": "69e42f40f3adffd83f1e98b1cd74b06b1e388729627dcb304fee609d19ddec02", + "language": "MATLAB", + "lines": 196, + "truncated": false, + "block": 9, + "row": 5387 + }, + { + "path": "LICENSE", + "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499", + "language": "License", + "lines": 121, + "truncated": false, + "block": 1, + "row": 2210 + }, + { + "path": "PD_SSRT_MAIN.m", + "sha256": "3f40e8af271997a9d4e927502d28432476aed02d7b86cb37a4700179cf039443", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 4438 + }, + { + "path": "README.md", + "sha256": "11b37afb80e4b068d029c0251cbc25543eacbd51f792b40d17a6e78a4546be32", + "language": "Text", + "lines": 74, + "truncated": false, + "block": 9, + "row": 14599 + }, + { + "path": "behavioral_analysis/PD_nosyncTE.m", + "sha256": "411c194ea4525076266e54dfa7830cbd8f532f094ad65a3f02daa8a311b66a42", + "language": "MATLAB", + "lines": 177, + "truncated": false, + "block": 9, + "row": 5256 + }, + { + "path": "behavioral_analysis/PD_ssrt_behav_MAIN.m", + "sha256": "ad5dfbba6103e9b015bbd698d9fa4507feac4f4fcaf7b94e4f4c67d8e97438d7", + "language": "MATLAB", + "lines": 138, + "truncated": false, + "block": 9, + "row": 4962 + }, + { + "path": "behavioral_analysis/RT_allgroupin.m", + "sha256": "531949e062a942d4e8ed8609bca73db7b7a431b5b286aad09fa58b5d50e1c6b1", + "language": "MATLAB", + "lines": 94, + "truncated": false, + "block": 9, + "row": 4685 + }, + { + "path": "behavioral_analysis/RT_comp_cuepair_trialtypes.m", + "sha256": "89549559849c3779222e62a55eabcfc50732a66143c8bd455d98e3e54a642075", + "language": "MATLAB", + "lines": 176, + "truncated": false, + "block": 9, + "row": 5115 + }, + { + "path": "behavioral_analysis/RT_perf_compare.m", + "sha256": "20f3db2389b80be0a96837aabeeb055cd6a1af93dd300181557a3c9ddb8f6896", + "language": "MATLAB", + "lines": 1086, + "truncated": false, + "block": 9, + "row": 5919 + }, + { + "path": "behavioral_analysis/SSDp05_compare.m", + "sha256": "910899404a42b3f4ce96a1d119e860244afb60b852a39989e146cabc91330c90", + "language": "MATLAB", + "lines": 386, + "truncated": false, + "block": 9, + "row": 5619 + }, + { + "path": "behavioral_analysis/SSRTime_PD.m", + "sha256": "85fad4f2b90718028300c327aee2b1f0556b867df1ee27de664b871aeabfdd3c", + "language": "MATLAB", + "lines": 189, + "truncated": false, + "block": 9, + "row": 5177 + }, + { + "path": "behavioral_analysis/calc_RT.m", + "sha256": "b3de336de12f69e3bcfbb6dc3eff2c2048f3293a7dcd440b195ddd4f3bc2290b", + "language": "MATLAB", + "lines": 159, + "truncated": false, + "block": 9, + "row": 5144 + }, + { + "path": "behavioral_analysis/calculate_trialnrs.m", + "sha256": "6c7760679a5d698ea6f9468d10295151c474f8e2be6a65da21b1baf46591c00f", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3852 + }, + { + "path": "behavioral_analysis/get_SSDs_RTs.m", + "sha256": "f30cdb7ee6c7ceb3cfbf01d9eeee236ae05a99e34ed7e8e634b67acb0ac535b5", + "language": "MATLAB", + "lines": 90, + "truncated": false, + "block": 9, + "row": 4474 + }, + { + "path": "behavioral_analysis/preop_postop_RT.m", + "sha256": "8112c706eb2c0efdaf2d87b7c39bc6ad103a2f4bf8f15c9db3cf0d22036476d2", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 9, + "row": 4738 + }, + { + "path": "behavioral_analysis/updrs_behav_corr.m", + "sha256": "ed82260079a28355bebec91c3fa0364f301566b94156cd3eccfc6b5904558b2c", + "language": "MATLAB", + "lines": 272, + "truncated": false, + "block": 9, + "row": 5418 + }, + { + "path": "other/StimOn_stoppart_evinx.m", + "sha256": "6fd73065c8fc91de430b62d62d9fe88c17bafc49767dad1bf017da81c66a6966", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3618 + }, + { + "path": "other/bootstatFDR_clustercorr.m", + "sha256": "51ea0a9ca6e5a56d44eb4fc0b4b319e44e18aa8c953e3817170a596e001a3e96", + "language": "MATLAB", + "lines": 103, + "truncated": false, + "block": 9, + "row": 4733 + }, + { + "path": "other/boxplot_astx.m", + "sha256": "5530c491b41982c81fd42923a87cbe2a3ab97426e4f40f149ccdc6b6dac421ee", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3561 + }, + { + "path": "other/clinical_groups.m", + "sha256": "ef4e6df007f5d187929edce8fb9632f5a56cd60a7e1ec360ebb689f1ff4c9c98", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 9, + "row": 4411 + }, + { + "path": "other/corrmapfig.m", + "sha256": "c6903bdc4d0f07eb9ee98794e5647701ba560b6ad7c384d119ecd1507a31476d", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 9, + "row": 4450 + }, + { + "path": "other/cuepair_trialtypes.m", + "sha256": "e6ad95d70fa4b333213227f550b0ccd70fc45d20293cb0c114c594c46d106f2e", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 9, + "row": 4114 + }, + { + "path": "other/cuepair_trialtypes_2Evinx.m", + "sha256": "27d8a0c410164bbfdd8f4c9bea15fae3e28e544d2f416862de52271fe99b9d6c", + "language": "MATLAB", + "lines": 98, + "truncated": false, + "block": 9, + "row": 4676 + }, + { + "path": "other/datpointsplot.m", + "sha256": "1aaefcf137f5bf6a1f1e0e2d07c35bd564480e5b73cb39b0e05bf5b063088f42", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3677 + }, + { + "path": "other/draw_signifpatch.m", + "sha256": "7353bc6d061d5026af9a859f8aed886364307bfa41fadfea181bcff7c30ba3af", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3624 + }, + { + "path": "other/find_evinx.m", + "sha256": "e17207a913cf9a27ad00b19ed94d0da7d8fdfa7309c8a5c1c5846af3f7b0aa38", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3857 + }, + { + "path": "other/generate_clus_distr_TF.m", + "sha256": "f23e0f4c303d6fc65147f4ead05d6ed4d3d7bf9b1858ea844d28e5c241fe290a", + "language": "MATLAB", + "lines": 347, + "truncated": false, + "block": 9, + "row": 5608 + }, + { + "path": "other/getdata2analyse.m", + "sha256": "992557ff63c61b2e7d60ea64f7a973bc9a0b9edd999851bcab583450ca873fd5", + "language": "MATLAB", + "lines": 327, + "truncated": false, + "block": 9, + "row": 5530 + }, + { + "path": "other/mychisquare.m", + "sha256": "907267537ca15b96d7e503b211f4bbd8e8321f27181ba903ee1bd16e5ef0b829", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 9, + "row": 3101 + }, + { + "path": "other/new_Evinxx_parts.m", + "sha256": "bcbec87dbe17cd438bda86c5e93efeac15349f72f153fdb0b2a0f3535144f97c", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3791 + }, + { + "path": "other/patient_groups_compare.m", + "sha256": "0fadba6c399e0d09e5d6d18d28fe75601deb7533b7e5106636588a0d45e735c0", + "language": "MATLAB", + "lines": 779, + "truncated": false, + "block": 9, + "row": 5836 + }, + { + "path": "other/polypredcicall_mod.m", + "sha256": "0a4398d50efb9ad15e71e8247f49d562ebfaeb34067d8b5a4fc54268dca09af1", + "language": "MATLAB", + "lines": 103, + "truncated": false, + "block": 9, + "row": 4635 + }, + { + "path": "other/set_my_boxplot.m", + "sha256": "42405e37f3328e96089ec2d6fdb986fb002b8c0dffb38bec69988e89e74c20ea", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3554 + }, + { + "path": "other/stacked_bar_perc.m", + "sha256": "5d6368b3b856990edf04de65eaa1ebf97c2bfab778f5dbb9414d5c6d03832825", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3815 + }, + { + "path": "task_code/ArCOMObject_Frame2TTL.m", + "sha256": "4195d09c9473419a89ff11fb3fea1c0cb500352dfa989c281147a51ada94c2c5", + "language": "MATLAB", + "lines": 325, + "truncated": false, + "block": 9, + "row": 5705 + }, + { + "path": "task_code/Frame2TTL.m", + "sha256": "60325642f936aae3ca767d78408512f86a09a85142db6fb93fcb886ffa3a6641", + "language": "MATLAB", + "lines": 138, + "truncated": false, + "block": 9, + "row": 5344 + }, + { + "path": "task_code/Task_SSRT.m", + "sha256": "c75a16543bf2073c299144856ff1767fcc55b797fdc54ff6f06e5f202966767c", + "language": "MATLAB", + "lines": 360, + "truncated": false, + "block": 9, + "row": 5684 + }, + { + "path": "task_code/default_cycle.m", + "sha256": "21f6c4f511560ea2307dc1b6a47e813100bed32c09a75c267807a25d1a0701bd", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 4471 + }, + { + "path": "task_code/delser.m", + "sha256": "07d0cc09b2047e7aaa893e0b72f6e7fe44434b6aa10c70e9a40724caaa6c3817", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 9, + "row": 2980 + }, + { + "path": "task_code/fgetl_nonblocking.m", + "sha256": "1ce1591e5c02f043f5450eab950be5a4377cffaa3befabf0c31739656c404bba", + "language": "MATLAB", + "lines": 174, + "truncated": false, + "block": 9, + "row": 5193 + }, + { + "path": "task_code/flipSens.m", + "sha256": "8fb4214f2c974dfb81a3a1ec797886ba0c1a5a66129591071faccd6ecbf58c9b", + "language": "MATLAB", + "lines": 160, + "truncated": false, + "block": 9, + "row": 5205 + }, + { + "path": "task_code/ser_read.m", + "sha256": "5aed51b43a8aa9a3d86d5d96d660807522b9b8a3eacaffcd046a71e52e172d6c", + "language": "MATLAB", + "lines": 86, + "truncated": false, + "block": 9, + "row": 4515 + }, + { + "path": "task_code/stop_signal.m", + "sha256": "4da1ef75c9deedd32d403211ce40bfa2eb375ad888c8c1f93976ab6cfbd57e9f", + "language": "MATLAB", + "lines": 189, + "truncated": false, + "block": 9, + "row": 5457 + }, + { + "path": "unit_LFP_coupling/PC_RT_correlation.m", + "sha256": "c61d1ad86348972b6c3c70da43b3eba46c973f9188de0419b72ea60fa92a7f84", + "language": "MATLAB", + "lines": 287, + "truncated": false, + "block": 9, + "row": 5489 + }, + { + "path": "unit_LFP_coupling/PC_bursting.m", + "sha256": "708671b801e2f1be3af5546c5dad89eda5eff745e41bb65cd5a02979c57236dd", + "language": "MATLAB", + "lines": 626, + "truncated": false, + "block": 9, + "row": 5768 + }, + { + "path": "unit_LFP_coupling/PC_cell_level.m", + "sha256": "960e7fa07b61416659138c8706e8398dd9fb104706a816a79b1e5e3fd52f60f4", + "language": "MATLAB", + "lines": 298, + "truncated": false, + "block": 9, + "row": 5591 + }, + { + "path": "unit_LFP_coupling/PC_cells_PSTH.m", + "sha256": "285662d77e35104bad0e810c0e8f33b5876e83096f4cbd602e261ba9a210fe68", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4406 + }, + { + "path": "unit_LFP_coupling/PC_figstat3.m", + "sha256": "0491a5e250da7d60dcffa902305ba923e15de9cd3dc14e9fe43281d38e3c6ebe", + "language": "MATLAB", + "lines": 187, + "truncated": false, + "block": 9, + "row": 5238 + }, + { + "path": "unit_LFP_coupling/PC_group_subevs.m", + "sha256": "67995921ca72d1f389729be32b0e9c4f8683469ea4003b182d12f41a405a04c6", + "language": "MATLAB", + "lines": 319, + "truncated": false, + "block": 9, + "row": 5611 + }, + { + "path": "unit_LFP_coupling/PC_groups_f.m", + "sha256": "bcb421bcfab8979aa8f8dd36fcfa7d8d5bac991b6604e45d26418add5df1801e", + "language": "MATLAB", + "lines": 397, + "truncated": false, + "block": 9, + "row": 5724 + }, + { + "path": "unit_LFP_coupling/PC_pie.m", + "sha256": "f7914fa2ce5cf02387d5b32097785fff2f84136351914d6caa23e2837d7d2785", + "language": "MATLAB", + "lines": 235, + "truncated": false, + "block": 9, + "row": 5475 + }, + { + "path": "unit_LFP_coupling/PC_polar.m", + "sha256": "18aca9639973a71cb31c6381f18b570a3b3203925e11ae504675e6dd5a7832e4", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 9, + "row": 4486 + }, + { + "path": "unit_LFP_coupling/PC_respcells_stacked_compare.m", + "sha256": "0d79ce78a4775c069a0bf4fc6135a8fc2858f2c86a01fe0502acda90a6f0df8f", + "language": "MATLAB", + "lines": 218, + "truncated": false, + "block": 9, + "row": 5366 + }, + { + "path": "unit_LFP_coupling/b_rao3_mod.m", + "sha256": "fe5ae7589cf5b4b79a60b07486dc97eeaeb229fe47a3b8310ab7a81379270065", + "language": "MATLAB", + "lines": 152, + "truncated": false, + "block": 9, + "row": 4909 + }, + { + "path": "unit_LFP_coupling/component_PC_RT_correlation.m", + "sha256": "0e24fbb863c9914326c6e0dc88821ed70040274c1081fc8fc26b50ec22f40fcc", + "language": "MATLAB", + "lines": 97, + "truncated": false, + "block": 9, + "row": 4535 + }, + { + "path": "unit_LFP_coupling/get_phas.m", + "sha256": "c13f4511bfb4c7d22c87f27e4cf0c75bd5a455d376b1d1a6f347a49556c10971", + "language": "MATLAB", + "lines": 131, + "truncated": false, + "block": 9, + "row": 4930 + }, + { + "path": "unit_LFP_coupling/phase_hist_sinewave_plot.m", + "sha256": "ca2672e8d9ecb65515912461d8df6de84d2ba9a08322f09c6219f28d28c0330b", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 9, + "row": 4195 + }, + { + "path": "unit_LFP_coupling/spik_phas_extraction.m", + "sha256": "ab857a2c897379e3d44d076ee967e274d1517608d8c669139c9d64f3eba56230", + "language": "MATLAB", + "lines": 391, + "truncated": false, + "block": 9, + "row": 5679 + }, + { + "path": "unit_LFP_coupling/spike_phase_coupling_MAIN.m", + "sha256": "0daf7420548990354e7fdc24b20ef68acd97805a0053c5a7c8b798a771b7a64f", + "language": "MATLAB", + "lines": 180, + "truncated": false, + "block": 9, + "row": 5286 + }, + { + "path": "unit_LFP_coupling/spike_triggered_average_PD.m", + "sha256": "6a8d5fbca09db2f7bae011d316c8bbd458e4a58dd6aac5a259986bb26a240cde", + "language": "MATLAB", + "lines": 252, + "truncated": false, + "block": 9, + "row": 5438 + }, + { + "path": "unit_analysis/EvsI_avg_psth.m", + "sha256": "21df89a6461eeefa98369f287deb1c7622ad865fbfa604bcc89092825a10233e", + "language": "MATLAB", + "lines": 342, + "truncated": false, + "block": 9, + "row": 5526 + }, + { + "path": "unit_analysis/LRatio_pd_ssrt.m", + "sha256": "4ebe18a730d1027ec664d615355516e85d32e64e0f02d716b9413a105e4c3f55", + "language": "MATLAB", + "lines": 118, + "truncated": false, + "block": 9, + "row": 4901 + }, + { + "path": "unit_analysis/L_ratio_ID_distrib.m", + "sha256": "e941e691464d5ceb1b2605185aaa7d39fb0b16411b7f0deb716d111668a119fc", + "language": "MATLAB", + "lines": 207, + "truncated": false, + "block": 9, + "row": 5207 + }, + { + "path": "unit_analysis/PD_ssrt_unit_MAIN.m", + "sha256": "a01e52cb94faf977ed55099cf1f172d5872e7a78d7b6f3c2ff03e23f44861972", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 9, + "row": 4248 + }, + { + "path": "unit_analysis/acg_mod.m", + "sha256": "bcc3b9e4e53467570697057530b4007abaa124fc94b45ec82eeffe29e0c04863", + "language": "MATLAB", + "lines": 279, + "truncated": false, + "block": 9, + "row": 5578 + }, + { + "path": "unit_analysis/all_resppred_map.m", + "sha256": "6b3d0bd8849c60db29d08fa3efae46e960ae631f31957d102c2771b49a598f2f", + "language": "MATLAB", + "lines": 207, + "truncated": false, + "block": 9, + "row": 5226 + }, + { + "path": "unit_analysis/autocorr_PD.m", + "sha256": "783e65f390172522afb120f448e98b0b9cda27f9b57bd1cd2e3253a4860c5a20", + "language": "MATLAB", + "lines": 69, + "truncated": false, + "block": 9, + "row": 4344 + }, + { + "path": "unit_analysis/avg_psth_plot.m", + "sha256": "ef4af6457d4465ec41b0ebcaf2988ff33562c3c838ca34b6651e30875e5094dc", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4531 + }, + { + "path": "unit_analysis/avg_psth_stat.m", + "sha256": "da48b6c9b9aff680a569ae200506618beac7228c38716059a4ed52c17f8d6888", + "language": "MATLAB", + "lines": 176, + "truncated": false, + "block": 9, + "row": 5119 + }, + { + "path": "unit_analysis/cellnr_pie.m", + "sha256": "ca95e06c79eab64f42dc93beea5779dc414477406c9ffd2b381887ac64d3b65f", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3594 + }, + { + "path": "unit_analysis/check_resp_pvalues.m", + "sha256": "ed0adc923e432cf236c92c425565d84f3bba6b46b6b00498a6e9e75692429758", + "language": "MATLAB", + "lines": 114, + "truncated": false, + "block": 9, + "row": 4548 + }, + { + "path": "unit_analysis/compare_partitions_resppred.m", + "sha256": "a8f323f47385f041b03828eeeffc7e5574ba0e8c30502cba5881297172d987b6", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3914 + }, + { + "path": "unit_analysis/defineLabelsColors_pd.m", + "sha256": "979ee0b44e1e592d6f4ca659089b4ed159173481fb52850decf7267584c5784e", + "language": "MATLAB", + "lines": 76, + "truncated": false, + "block": 9, + "row": 5328 + }, + { + "path": "unit_analysis/find_cellidx.m", + "sha256": "12b4d35d839f6b825b8d6ec180171c212b1fb6f6aa2308536a6ffde8d8ee4ba9", + "language": "MATLAB", + "lines": 138, + "truncated": false, + "block": 9, + "row": 4895 + }, + { + "path": "unit_analysis/get_prop.m", + "sha256": "6bde51e1d053880616ffd8e638916a87f28e7ca49abae7233a52c085029d13a3", + "language": "MATLAB", + "lines": 652, + "truncated": false, + "block": 9, + "row": 5840 + }, + { + "path": "unit_analysis/mediansplitBI_PSTHs.m", + "sha256": "9840d28df0a8dc9c29afffc725957c09194f36c9c9ccb6ba91d3072b80e7e69b", + "language": "MATLAB", + "lines": 348, + "truncated": false, + "block": 9, + "row": 5651 + }, + { + "path": "unit_analysis/norm_psth_map1.m", + "sha256": "b8f9553b08461993b21a83e2e8501b721a06eb9791bf6aeb13ed1586b67ae1e1", + "language": "MATLAB", + "lines": 266, + "truncated": false, + "block": 9, + "row": 5482 + }, + { + "path": "unit_analysis/partitions_avg_psth.m", + "sha256": "6bdabbb49bad2794abbe91c515ee263dc43b18e787635f6a0fbc8fa2a687099c", + "language": "MATLAB", + "lines": 302, + "truncated": false, + "block": 9, + "row": 5524 + }, + { + "path": "unit_analysis/responsesorter_PD.m", + "sha256": "1c6efee862327ee4e1948b03cf92a6726f8032d0eb4e67e933c5797dc3651432", + "language": "MATLAB", + "lines": 258, + "truncated": false, + "block": 9, + "row": 5506 + }, + { + "path": "unit_analysis/respsort_partitions_PD.m", + "sha256": "f08ed9b8c5481c4407b8cc7166de67fd1b93ba4be764f97d0d446376168daf83", + "language": "MATLAB", + "lines": 238, + "truncated": false, + "block": 9, + "row": 5423 + }, + { + "path": "unit_analysis/set_meanFR.m", + "sha256": "d809fde32ab6a3a7e21a5f313c9b2a10973bcd52b5e8bf3bdd1d2282783b8948", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3669 + }, + { + "path": "unit_analysis/unit_bursting.m", + "sha256": "4f8f86e5a9d1107b85a5e0ae8b4a5f7e1f4358ad973a5897a40c4f513ff09644", + "language": "MATLAB", + "lines": 344, + "truncated": false, + "block": 9, + "row": 5499 + }, + { + "path": "unit_analysis/unit_sorter.m", + "sha256": "cd37379b93bfc8affb09d9bc67678e7d923abeb85180ea979fffcf6df8812efd", + "language": "MATLAB", + "lines": 114, + "truncated": false, + "block": 9, + "row": 4677 + }, + { + "path": "unit_analysis/unit_subregions.m", + "sha256": "60168e2321f1998c84715d154e6ea5b8d63122c3ad537eab23265e10a24124b2", + "language": "MATLAB", + "lines": 923, + "truncated": false, + "block": 9, + "row": 5879 + }, + { + "path": "unit_analysis/updrs_bursting_corr.m", + "sha256": "2b7fa1c1d3d042b42b3e076768416228d284900cbb35a9ebd98f76346cf26893", + "language": "MATLAB", + "lines": 104, + "truncated": false, + "block": 9, + "row": 4624 + }, + { + "path": "unit_preprocess/create_EventSpikes_mat.m", + "sha256": "7d13228487cf35af8ea4ac2f29656798818d1b321c44f82ee5a6a3dae1bef988", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 4007 + }, + { + "path": "unit_preprocess/defineEventsEpochs_pdtask.m", + "sha256": "19633aa6c58aca289f6cfd20dc8aaedaf5afb630fd1ee938039587700cdfef7c", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 9, + "row": 4327 + }, + { + "path": "unit_preprocess/inodisc.m", + "sha256": "3c67b84cb1db20318a2f9753fa970e67d90fc4165d6507b4fe69b2dcfca3615b", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 9, + "row": 4645 + }, + { + "path": "unit_preprocess/openephys_SaveMClustFeatures.m", + "sha256": "7ccf7f8c32988a517fd13a4aa552d27930194694dad5a6ea55d67e1e92e317f2", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4397 + }, + { + "path": "unit_preprocess/read_inomed.m", + "sha256": "d46194c92e9ed92af45faa2281c81281114f31f6f88207b621d5f026e7d8a8ee", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 9, + "row": 4588 + }, + { + "path": "unit_preprocess/saveDATasMER.m", + "sha256": "30a4a245f977e1ebc1c36c340842120d8606ae8a46235509c66b4b8d8f6c20f9", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 9, + "row": 4322 + } + ] +} \ No newline at end of file diff --git a/manifests/26/github.com__l-drescher__codes_fmri_lc_adhd.json b/manifests/26/github.com__l-drescher__codes_fmri_lc_adhd.json new file mode 100644 index 0000000000000000000000000000000000000000..3f3371ac8a9edc30b2bdfe510bf8ac6d2e542906 --- /dev/null +++ b/manifests/26/github.com__l-drescher__codes_fmri_lc_adhd.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/l-drescher/codes_fmri_lc_adhd", + "url": "https://github.com/l-drescher/codes_fMRI_LC_ADHD", + "host": "github.com", + "commit": "6b9cf4aebb1eec9da54c9f5a7b1a7786a0535a68", + "license": "CC-BY-4.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Analysis_jupyter_notebook.ipynb", + "sha256": "2c34c1da48a8ed67dd25eff4a5440f1151e2e0210d4fdabb335ad7fbccee6efd", + "language": "Jupyter", + "lines": 691, + "truncated": false, + "block": 9, + "row": 2697 + }, + { + "path": "LICENSE", + "sha256": "9ba9550ad48438d0836ddab3da480b3b69ffa0aac7b7878b5a0039e7ab429411", + "language": "License", + "lines": 396, + "truncated": false, + "block": 1, + "row": 2224 + }, + { + "path": "README.md", + "sha256": "353cde92b8cfc17360cf034d4f20d4be9d18c41916ce1cb9c5379b64243ebce9", + "language": "Text", + "lines": 9, + "truncated": false, + "block": 9, + "row": 14477 + } + ] +} \ No newline at end of file diff --git a/manifests/26/github.com__nely-epfl__kinematics3d.json b/manifests/26/github.com__nely-epfl__kinematics3d.json new file mode 100644 index 0000000000000000000000000000000000000000..3c7e21c8045ddef21642681f05e2542581b94bc1 --- /dev/null +++ b/manifests/26/github.com__nely-epfl__kinematics3d.json @@ -0,0 +1,255 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/nely-epfl/kinematics3d", + "url": "https://github.com/NeLy-EPFL/kinematics3d", + "host": "github.com", + "commit": "7b2621bf9c677266b68d755822356ffe1868524d", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "cc128cae0b377a6f3dc8815363d9702b08677171fbe0614b0f7054221fc4d2e8", + "language": "License", + "lines": 201, + "truncated": false, + "block": 9, + "row": 2902 + }, + { + "path": "README.md", + "sha256": "57abcf7bc6f89210f53652fb8207e31e5544f7d6a8e72e18ba1564e515397010", + "language": "Text", + "lines": 63, + "truncated": false, + "block": 9, + "row": 14586 + }, + { + "path": "charuco_board/check_charuco.py", + "sha256": "df3ed51e4b0ba4f882e557b5ab19ed371b5e327998cdcef1c3148aaca4b6d993", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7380 + }, + { + "path": "charuco_board/design/checkboard_config.py", + "sha256": "8f21043b37530870bad261470a551f2c93ae584a450e1288ba4efb3266c08ad3", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 7070 + }, + { + "path": "dlc_fxns/01_extract_frames.py", + "sha256": "488f01250e0a2e7857b5e0ccf0990ec16f20fcdcbb869115663a579d8825edde", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 6877 + }, + { + "path": "dlc_fxns/02_create_training_dataset.py", + "sha256": "ef45cefb2dc08f8777fb7fceb83a6a3d75d4329f0a8b7b94f07ca3ee41d8bfaa", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7264 + }, + { + "path": "dlc_fxns/03_train_network.py", + "sha256": "d50424e4da429e8e21f3225ac9e959e331a81bd94f028cc6a92636d9dd07cc9b", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7237 + }, + { + "path": "dlc_fxns/04_evaluate_network.py", + "sha256": "6fe5398d2023213b36d9620baae225a005642f37f61b1202718e90f9e9996915", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 6838 + }, + { + "path": "dlc_fxns/05_run_pose_estimation.py", + "sha256": "23b0c0ee5707b796751b05a84aa9a28e4c19c62cc501a1993620aef78e4e39d5", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 8070 + }, + { + "path": "dlc_fxns/06_extract_outlier_refine.py", + "sha256": "5c2b90251bcfac8fa6ae19f46683b7cba05d676873b3f02152179d19f68a3dab", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7819 + }, + { + "path": "dlc_fxns/add_new_videos.py", + "sha256": "59216c2553c7e39a37d666f6aeb91da5eec7174de54f3d50679bfdb6cb95abef", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6738 + }, + { + "path": "dlc_fxns/change_kp_names.py", + "sha256": "f50f981fa5c269f350b726714a15afa8930114e715b29048aef6a5c2c3c4052c", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 9, + "row": 6818 + }, + { + "path": "dlc_fxns/check_video_exists.py", + "sha256": "89aa10239451b2918f90dee7fb31f0c9f353b8ca4013aff249f5aa2b782aa544", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 9096 + }, + { + "path": "dlc_fxns/femke_exps.py", + "sha256": "b0a6620bd3aa3047704ff7b965644fbee27a2063c54e5bf43a1e08ce34e9eb7b", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7862 + }, + { + "path": "dlc_fxns/get_videos_list.py", + "sha256": "22cd0007f4e715f730f80e2db802f7a4fe4a09aa5a132451a04c3ff23028da1d", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6984 + }, + { + "path": "dlc_fxns/run_pose_5cams.py", + "sha256": "57bf7b4f19dfb77ed31bd4c79a229667894569eacf916d9497c69c5d6efa6cec", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 7639 + }, + { + "path": "dlc_fxns/transfer_synch.py", + "sha256": "8f2a07ee608d05800f547dc143e3d53a3353896b1e8c8b0d9412a374cae18a5e", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8841 + }, + { + "path": "kinematics3d/anipose_pipeline.py", + "sha256": "d76d0a1b8057be712b7e229f17ef2d86b6ff159275059691a5255e1b17a23092", + "language": "Python", + "lines": 225, + "truncated": false, + "block": 9, + "row": 10372 + }, + { + "path": "kinematics3d/camera_pose_viz.py", + "sha256": "aaddf9a457f2d62dcfa0596208ab51b35ec69b75f1961adeeb84e8d68a5b49e9", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 8602 + }, + { + "path": "kinematics3d/constants.py", + "sha256": "408e472a9b127a38e2102008eb9e3c4ea7a804409d835bb7de83035676b5c641", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 9058 + }, + { + "path": "kinematics3d/ffmpeg.py", + "sha256": "303caaeffc5019311a1cce31c1bea09ef8394a68bf261b9d2c588d478ed6843e", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 9, + "row": 9074 + }, + { + "path": "kinematics3d/pose2d.py", + "sha256": "63c69128babd108d73da94ad0c05764944ffb60545d3f876af37e751f439a514", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 9, + "row": 9762 + }, + { + "path": "kinematics3d/utils.py", + "sha256": "020b8d2ebe1820e8faeaf5cefa18a688a93f9a8cea05003f6926bb41f278fb70", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8512 + }, + { + "path": "kinematics3d/visualization.py", + "sha256": "bf9108391638d5a0ec9917810efe4fab54050e9aedeed7373bcb3a8dc6b4f20e", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 9, + "row": 9504 + }, + { + "path": "scripts/run_pipeline_sample.sh", + "sha256": "549945c6b6b747c7859d1e6035cfc0e594f86898583e65f844923671c93d2836", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 9, + "row": 14015 + }, + { + "path": "scripts/run_video_making.py", + "sha256": "1010a9a04c593bfac85295197d8d775c76958dfd4f45801110cf099410a8cacf", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 9, + "row": 7848 + }, + { + "path": "setup.py", + "sha256": "0a7033dfc1938fce67cb19368c05896192166586f063b3fa31fef05b77830aa5", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7345 + } + ] +} \ No newline at end of file diff --git a/manifests/26/github.com__omid-sh__rgcaefs.json b/manifests/26/github.com__omid-sh__rgcaefs.json new file mode 100644 index 0000000000000000000000000000000000000000..ec69616323fc9be42d2ac943dbbe00d0a4491845 --- /dev/null +++ b/manifests/26/github.com__omid-sh__rgcaefs.json @@ -0,0 +1,156 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/omid-sh/rgcaefs", + "url": "https://github.com/Omid-SH/RGCaEFS", + "host": "github.com", + "commit": "7108c21b04a5bc0fdbe3eec9396b7b493d019813", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "CARCJobGenerator.py", + "sha256": "90d633556c9c0c13d4c1d0b5a88e7b73c98cc1289571a6e26486f6b8abeeed23", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 8634 + }, + { + "path": "CellRecordsPreprocessing.py", + "sha256": "c20ef3806b019ba44dfae08db640ba71560a2a692ce66a291425aef49599c578", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 9, + "row": 8950 + }, + { + "path": "LICENSE", + "sha256": "8f31e5296d9bb19b62e7eacb0403f2156f54e6b39f43ffdaed5d058a4bed8ae1", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2796 + }, + { + "path": "README.md", + "sha256": "cb3e126787db92db65eee08bd1c2a4d25cdb07ab7855213ff6f9d3d3e99084b8", + "language": "Text", + "lines": 2, + "truncated": false, + "block": 9, + "row": 14455 + }, + { + "path": "SingleCellRGCsCaModelNeuron/IT.mod", + "sha256": "1bf6977a0480633e56c98dcc2b81e870919288a32d68959abbb0c5f0ae7fe53f", + "language": "NEURON", + "lines": 84, + "truncated": false, + "block": 9, + "row": 6026 + }, + { + "path": "SingleCellRGCsCaModelNeuron/Ih.mod", + "sha256": "c541d71e1f0c8d6d3c032be77cc737ce25ef287877602268212b649f939b5e85", + "language": "NEURON", + "lines": 85, + "truncated": false, + "block": 9, + "row": 6024 + }, + { + "path": "SingleCellRGCsCaModelNeuron/RGCModel.py", + "sha256": "70dc533ae791ec39024c7a94f6699bf8aa3a90779dc23a5cc37ec15d201a742d", + "language": "Python", + "lines": 661, + "truncated": false, + "block": 9, + "row": 12177 + }, + { + "path": "SingleCellRGCsCaModelNeuron/StimulationGenerator.py", + "sha256": "d85a80bdc248b685e3044f93dbbc1d77484b64786401ca58bf1545d0d954fb60", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7038 + }, + { + "path": "SingleCellRGCsCaModelNeuron/main.py", + "sha256": "cf9fa3ebc418aef44535953c65dacac1ddec2a92b45138c505ed19a8a5679fd6", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 9, + "row": 8885 + }, + { + "path": "SingleCellRGCsCaModelNeuron/makecells_A2i.hoc", + "sha256": "138f79134d4cddc487fbf7e04ae9fb0c245ff0228fcc7a0dc3a30aa2b05f8abd", + "language": "NEURON", + "lines": 54, + "truncated": false, + "block": 9, + "row": 6025 + }, + { + "path": "SingleCellRGCsCaModelNeuron/parallel_optimizer.py", + "sha256": "90799b4b330ade245410b1a0068f6fcb5f39be5e9fa021c04e50de0c2a02be11", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 7916 + }, + { + "path": "SingleCellRGCsCaModelNeuron/parameter_sweep.sh", + "sha256": "a8f9ff6d926c5967d68bc613eece2e4341b17c7f746e0538e670e221dd320add", + "language": "Shell", + "lines": 64, + "truncated": false, + "block": 9, + "row": 14343 + }, + { + "path": "SingleCellRGCsCaModelNeuron/spike.mod", + "sha256": "f74eb0ad4effd5d9db5a8a5f9f3b26e88d1d63f22ab42bca9693d5d8d1af761e", + "language": "NEURON", + "lines": 158, + "truncated": false, + "block": 9, + "row": 6027 + }, + { + "path": "TIFFtoMP4.py", + "sha256": "ef41cd8d7866ef6c553dbaab5983e7c91ef9e16a26da0039443026c37aa8d205", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 8391 + }, + { + "path": "TIFtoCellConverter.py", + "sha256": "28a55219bbd5ec4ee459ce26b8f99836314f01b611e75b61c237b39bae129f1e", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 9947 + }, + { + "path": "tests.ipynb", + "sha256": "6d5d66b07cc1a8c190a7687f944f342adf2816c6ef24886dbbbc2ea754821ee1", + "language": "Jupyter", + "lines": 965, + "truncated": false, + "block": 9, + "row": 2711 + } + ] +} \ No newline at end of file diff --git a/manifests/27/github.com__sridevi96__neurodevtime.json b/manifests/27/github.com__sridevi96__neurodevtime.json new file mode 100644 index 0000000000000000000000000000000000000000..c72a62162bcd08de74412503cde2613a1581b618 --- /dev/null +++ b/manifests/27/github.com__sridevi96__neurodevtime.json @@ -0,0 +1,138 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/sridevi96/neurodevtime", + "url": "https://github.com/sridevi96/NeuroDevTime", + "host": "github.com", + "commit": "d2f19595d465e73247b9e01d0b1851970e44337e", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "0c4d4131c29bb823691780426870051904e699f7dc48eae0bc6d28834ae41d47", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2765 + }, + { + "path": "README.md", + "sha256": "405a1d9887805dcb691ae27b083153d41a088b4a4bed9b10a29e9461ef5fb201", + "language": "Text", + "lines": 4, + "truncated": false, + "block": 9, + "row": 14468 + }, + { + "path": "code/.ipynb_checkpoints/Niceplotting_Fig3_celltypeinv_celltypespecific_models-checkpoint.ipynb", + "sha256": "f9731c7ae054c71f880f073c1db5e779599c06a5402ad62cd000848bcb5983fb", + "language": "Jupyter", + "lines": 897, + "truncated": false, + "block": 9, + "row": 2716 + }, + { + "path": "code/.ipynb_checkpoints/ageprediction_HNOCA_organoidatlas-checkpoint.ipynb", + "sha256": "4604303444f4e05536696b83c2d0bbd43202e1fd114b356347aa7bb6bbffe65b", + "language": "Jupyter", + "lines": 149, + "truncated": false, + "block": 9, + "row": 2353 + }, + { + "path": "code/.ipynb_checkpoints/ageprediction_Paulsen_ASD_organoids-checkpoint.ipynb", + "sha256": "5f12582945635bb8730f8954f49d0f4fdb3101af4af6982ca89efe610a5e8a4b", + "language": "Jupyter", + "lines": 171, + "truncated": false, + "block": 9, + "row": 2416 + }, + { + "path": "code/.ipynb_checkpoints/ageprediction_fetal_hypothalamus-checkpoint.ipynb", + "sha256": "bea4cce4b6384dda0fb605bd282c2c455e0fe49a0c2ed8c299caba0b40e5a4a3", + "language": "Jupyter", + "lines": 159, + "truncated": false, + "block": 9, + "row": 2404 + }, + { + "path": "code/.ipynb_checkpoints/ageprediction_newfetaldatasets_modeltraining-checkpoint.ipynb", + "sha256": "2f5759458638cb95fc59202f7dc101034678eeb21f1e1c00e920da5737d0a63c", + "language": "Jupyter", + "lines": 285, + "truncated": false, + "block": 9, + "row": 2541 + }, + { + "path": "code/.ipynb_checkpoints/agepredictions-checkpoint.Rmd", + "sha256": "c037c4c97e8dd0d103cfe1941d20c30ec1a7a331113b6a0852ac879de946ee2d", + "language": "R", + "lines": 31, + "truncated": false, + "block": 9, + "row": 12799 + }, + { + "path": "code/Paulsen_preprocessing.r", + "sha256": "b33aabbcb60ca455aca2d1a9a06e2f17c9aca3ecfedf3b1342fc86ced03ab307", + "language": "R", + "lines": 46, + "truncated": false, + "block": 9, + "row": 12923 + }, + { + "path": "code/ageprediction_HNOCA_organoidatlas.ipynb", + "sha256": "1ccf0e5f6e6d4d1a6d4a3241f98b3774d068bd799668410013a7430eeb15812e", + "language": "Jupyter", + "lines": 149, + "truncated": false, + "block": 9, + "row": 2354 + }, + { + "path": "code/ageprediction_Paulsen_ASD_organoids.ipynb", + "sha256": "50644fda846835dab8f1a6f46f5fef179d4746f4aa377f5b8eedbecd383e7ad6", + "language": "Jupyter", + "lines": 132, + "truncated": false, + "block": 9, + "row": 2370 + }, + { + "path": "code/ageprediction_fetal_hypothalamus.ipynb", + "sha256": "911ff96f75533b7f611d7cc79e668de4bd7087cad44605728aacae20bdf2c746", + "language": "Jupyter", + "lines": 58, + "truncated": false, + "block": 9, + "row": 2247 + }, + { + "path": "code/ageprediction_newfetaldatasets_modeltraining.ipynb", + "sha256": "2f5759458638cb95fc59202f7dc101034678eeb21f1e1c00e920da5737d0a63c", + "language": "Jupyter", + "lines": 285, + "truncated": false, + "block": 9, + "row": 2541 + }, + { + "path": "code/fetal_hypothalamus_processing.r", + "sha256": "8eb45e8b85114a4bdf0b6b05b11d223af6bc32381e4109768c613ccdfac4b180", + "language": "R", + "lines": 89, + "truncated": false, + "block": 9, + "row": 13241 + } + ] +} \ No newline at end of file diff --git a/manifests/27/zenodo__19280257.json b/manifests/27/zenodo__19280257.json new file mode 100644 index 0000000000000000000000000000000000000000..36ad3747273e0dd4f35f4ed8b19caa7001cf7624 --- /dev/null +++ b/manifests/27/zenodo__19280257.json @@ -0,0 +1,282 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19280257", + "url": "https://doi.org/10.5281/zenodo.19280257", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Figure 4C.m", + "sha256": "37792b6dd65a639bf7a3c4d467706dcd4d0d52925035dcfdd751e258a99e1944", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3463 + }, + { + "path": "Figure 5H.m", + "sha256": "745f5518335ec3eb7d80db1bd045f0b569ff42df771e45a6f94f26b9fa98ab1f", + "language": "MATLAB", + "lines": 140, + "truncated": false, + "block": 9, + "row": 5138 + }, + { + "path": "Figure S3.m", + "sha256": "390c779b4bf1068399e08d4c92e3088d5e1f507369a627e140cfb87dffe8012c", + "language": "MATLAB", + "lines": 269, + "truncated": false, + "block": 9, + "row": 5627 + }, + { + "path": "Figure5Ato5F_S2.m", + "sha256": "c66e992112b91fc9005482c0cd53fa98735063725cabdd70f1a90bf21731dbe9", + "language": "MATLAB", + "lines": 276, + "truncated": false, + "block": 9, + "row": 5539 + }, + { + "path": "Figure_1E.m", + "sha256": "02755fbda9a990866f9f008fdbf32d5ee9f5ea8f4b7ecb9f2a54597495dd2ee9", + "language": "MATLAB", + "lines": 127, + "truncated": false, + "block": 9, + "row": 4769 + }, + { + "path": "Figure_2A.m", + "sha256": "79c313b0264e4a1c6519645c133018f4454a29141eec93184123236b99d3caf7", + "language": "MATLAB", + "lines": 203, + "truncated": false, + "block": 9, + "row": 5440 + }, + { + "path": "Figure_2A_plot.m", + "sha256": "dcdb12075d42b65d16d31c8b8b35819e185deb11ee05c6a989cdba0530027a7c", + "language": "MATLAB", + "lines": 258, + "truncated": false, + "block": 9, + "row": 5494 + }, + { + "path": "Figure_2B.m", + "sha256": "aabe4b6be533cc60f6f58a66f46c53a624e7f28e8a9f23e66344a471b697bf6e", + "language": "MATLAB", + "lines": 285, + "truncated": false, + "block": 9, + "row": 5587 + }, + { + "path": "Figure_2B_plot.m", + "sha256": "15a8769a62321bd03e68474c8bf752c61a91d1a1f5ff9ed8f6fab64154a73621", + "language": "MATLAB", + "lines": 269, + "truncated": false, + "block": 9, + "row": 5559 + }, + { + "path": "Figure_2C.m", + "sha256": "a9a09fef7a21e5516b293bb2824ea09f6c28ee0d3e0ebd7d740d7e6e3c81d0f1", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4051 + }, + { + "path": "Figure_2E.m", + "sha256": "0eb3dc16177876ff4211ccfd6e621075104be401598a8ca65cb82d9b9e8c5bf7", + "language": "MATLAB", + "lines": 258, + "truncated": false, + "block": 9, + "row": 5510 + }, + { + "path": "Figure_2F.m", + "sha256": "1f378cb968bce22003d9a5f79f4941c65d9010ac0dddc5a8bd7614882acb74b4", + "language": "MATLAB", + "lines": 250, + "truncated": false, + "block": 9, + "row": 5500 + }, + { + "path": "Figure_3A.m", + "sha256": "7497163f5dfabdc76c3a1a81ad98e46d7851deb3afd4e422141bda5efd5003cd", + "language": "MATLAB", + "lines": 172, + "truncated": false, + "block": 9, + "row": 5149 + }, + { + "path": "Figure_3B.m", + "sha256": "8cfcc13063559ccb26c5803e3efa707870877d3cdd7dd7386e39e386720e67b9", + "language": "MATLAB", + "lines": 214, + "truncated": false, + "block": 9, + "row": 5339 + }, + { + "path": "Figure_3C.m", + "sha256": "727bfabe3c23c974a45acf2bc2c63a3754e68c264c56d05142fc6bb9c24f5fa3", + "language": "MATLAB", + "lines": 210, + "truncated": false, + "block": 9, + "row": 5334 + }, + { + "path": "Figure_3D.m", + "sha256": "856109df98fa164c007b53179c736e655b376ee758d9df1445ae7128f6103724", + "language": "MATLAB", + "lines": 213, + "truncated": false, + "block": 9, + "row": 5341 + }, + { + "path": "Figure_4A.m", + "sha256": "fc865d6eb38ed363620fbeafd2b72cb833d9c43c8cf6f536db37caf7a506c044", + "language": "MATLAB", + "lines": 130, + "truncated": false, + "block": 9, + "row": 4876 + }, + { + "path": "Figure_4B.m", + "sha256": "5fa1331ac31876801a50be3657f6472f2103926311b06b49b432244c65a522e0", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 9, + "row": 4571 + }, + { + "path": "Figure_5G.m", + "sha256": "5a6eb59affb4537712126c8a8fdd560f44b9827bd77589587c40f801382fd9f4", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 4072 + }, + { + "path": "Figure_6A.m", + "sha256": "df2f29ba3792b1ec7285ce813071e385f5b5e028a58ca2b00a3cac5ca3a02142", + "language": "MATLAB", + "lines": 210, + "truncated": false, + "block": 9, + "row": 5382 + }, + { + "path": "Figure_6C.m", + "sha256": "19e4706f736a660bf6061c30da03ccca20ab208ebe04a7640e1c14ff1903cb33", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 9, + "row": 4380 + }, + { + "path": "Figure_6E.m", + "sha256": "eca7ad1922335cb8ab6aa190eb28c72025d7d18fa1b4bab388f862fef6fd4673", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 9, + "row": 4607 + }, + { + "path": "README.md", + "sha256": "cf3981ed7c87ce7ed3d54e975d54ec7777e8aaff2f11dfecbd36d9359bd6d6d9", + "language": "Text", + "lines": 77, + "truncated": false, + "block": 9, + "row": 14567 + }, + { + "path": "alignEyeNeuro.m", + "sha256": "172af22b9815d8bbe5f4e39394395d487a411c60fe46796f64458599fcd9cdf2", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 4201 + }, + { + "path": "exportCurrentFigAsPDF.m", + "sha256": "c1ad69a99b57c58109a3bda188e076da95042059be8110aebeea2511f0e58a24", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3836 + }, + { + "path": "importfile.m", + "sha256": "15f8885fa24b6a904a52db70e88dd0e23ccb327d13dcdb6f219a4198d7e5aeca", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4838 + }, + { + "path": "jh_bar.m", + "sha256": "8c5cb8959d37502a39fab1e1e261d73bd2e213d69e2cf31c3c4280b8cfbcd5fc", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3572 + }, + { + "path": "plot_raster.m", + "sha256": "ffe725e1a2b324613b773809135ac6d510209b782a790f032ed8697ab4dbdc20", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4376 + }, + { + "path": "setPapertoFigPos.m", + "sha256": "77137b7887ca045a8394d893bbad81309c4c03100e88514bc792c91835f542c1", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3765 + }, + { + "path": "shadedErrorBar.m", + "sha256": "5008b16ffc81d27f4c1c51cf191aafa2666a109494df127fe0bb2718ff9f60bc", + "language": "MATLAB", + "lines": 196, + "truncated": false, + "block": 9, + "row": 5091 + } + ] +} \ No newline at end of file diff --git a/manifests/29/github.com__arthurns16__llm-empowered-machine-learning-assisted-prediction-of-single-phase-heos.json b/manifests/29/github.com__arthurns16__llm-empowered-machine-learning-assisted-prediction-of-single-phase-heos.json new file mode 100644 index 0000000000000000000000000000000000000000..2d33f457e8554cad135737a12ff1d76582b01f9e --- /dev/null +++ b/manifests/29/github.com__arthurns16__llm-empowered-machine-learning-assisted-prediction-of-single-phase-heos.json @@ -0,0 +1,66 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/arthurns16/llm-empowered-machine-learning-assisted-prediction-of-single-phase-heos", + "url": "https://github.com/Arthurns16/LLM-empowered-machine-learning-assisted-prediction-of-single-phase-HEOs", + "host": "github.com", + "commit": "3836baa8a4d369b28cedb4328e0c6ec115737f9d", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Binary/Model/MLP.ipynb", + "sha256": "cb889f1dc78cbe66b7402c5dcd4dba8b5bb1a01077dd3790eccb7c3b8dda1410", + "language": "Jupyter", + "lines": 191, + "truncated": false, + "block": 9, + "row": 2402 + }, + { + "path": "LICENSE", + "sha256": "782cc18f639ab4ec512c299111b32bb00801d010b51849e59c64db4f61c1fe98", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2849 + }, + { + "path": "Multiclass/Feature_engineering/Feature_engineering_batch_pipeline.py", + "sha256": "0e602cd73f0b9a48c49e92b614ca86e9686fcd347db123861ab994ec271819aa", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 9559 + }, + { + "path": "Multiclass/Feature_selection/Feature_selection_batch_pipeline.py", + "sha256": "b673390ddf0c71acb37212418a5eb6f398611f4889ac91d218e85897e7608e38", + "language": "Python", + "lines": 232, + "truncated": false, + "block": 9, + "row": 10463 + }, + { + "path": "Multiclass/Models/Batch_ML_1x5_Fold_Tuning.py", + "sha256": "2b6601b87abd34c5a69a0c69d684a709a5398c89c4f95a29ee0a357d054bcc00", + "language": "Python", + "lines": 633, + "truncated": false, + "block": 9, + "row": 12031 + }, + { + "path": "README.md", + "sha256": "e6ed6fb17cc7a00abf8d5716fd844d79596378e86531a461ca69637aaca992c1", + "language": "Text", + "lines": 28, + "truncated": false, + "block": 9, + "row": 14536 + } + ] +} \ No newline at end of file diff --git a/manifests/2a/github.com__chaofanli-jinlinuniversity__alignment-architecture-of-heterogeneous-data.json b/manifests/2a/github.com__chaofanli-jinlinuniversity__alignment-architecture-of-heterogeneous-data.json new file mode 100644 index 0000000000000000000000000000000000000000..ad5374395db1c65d894d46303c2b476a3bd4f282 --- /dev/null +++ b/manifests/2a/github.com__chaofanli-jinlinuniversity__alignment-architecture-of-heterogeneous-data.json @@ -0,0 +1,1119 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/chaofanli-jinlinuniversity/alignment-architecture-of-heterogeneous-data", + "url": "https://github.com/ChaofanLi-JinlinUniversity/Alignment-Architecture-of-Heterogeneous-Data/tree/V2.0.1", + "host": "github.com", + "commit": "0bf8dfda39bd55b13a339e3519a59ecb60d10632", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Alignment and modeling tasks/A/airborne/alignment_2-3AS_1_IS_25ms.py", + "sha256": "56cf4ef5dda2f2d16eba920fbc070ae57aaf306bc4557a828b627537c00f2c11", + "language": "Python", + "lines": 395, + "truncated": false, + "block": 9, + "row": 11368 + }, + { + "path": "Alignment and modeling tasks/A/airborne/alignment_2-3AS_lg_IS_25ms.py", + "sha256": "d243640b0f8b795876cc6f65563a46524d8f3380868f77a3c4053b20a9b928d8", + "language": "Python", + "lines": 395, + "truncated": false, + "block": 9, + "row": 11369 + }, + { + "path": "Alignment and modeling tasks/A/wideband/alignment_2-3AS_1_IS_25ms.py", + "sha256": "56cf4ef5dda2f2d16eba920fbc070ae57aaf306bc4557a828b627537c00f2c11", + "language": "Python", + "lines": 395, + "truncated": false, + "block": 9, + "row": 11368 + }, + { + "path": "Alignment and modeling tasks/A/wideband/alignment_2-3AS_lg_IS_25ms.py", + "sha256": "d243640b0f8b795876cc6f65563a46524d8f3380868f77a3c4053b20a9b928d8", + "language": "Python", + "lines": 395, + "truncated": false, + "block": 9, + "row": 11369 + }, + { + "path": "Alignment and modeling tasks/B/airborne/alignment_2-3AS_1_OS_25ms.py", + "sha256": "7c2f0a3f840bcd1d5e887b7c64d5d02d87cbc571872be36b91216d8f749f3b55", + "language": "Python", + "lines": 395, + "truncated": false, + "block": 9, + "row": 11367 + }, + { + "path": "Alignment and modeling tasks/B/airborne/alignment_2-3AS_1_OS_5ms.py", + "sha256": "921ed8fe42f86d01d8b04de9e5c68a1f32d14a11c62bc53546f0a623fb5c988d", + "language": "Python", + "lines": 399, + "truncated": false, + "block": 9, + "row": 11447 + }, + { + "path": "Alignment and modeling tasks/B/airborne/alignment_2-3AS_lg_OS_25ms.py", + "sha256": "7989aaf0bf867d4db85ef98b6462348fb331cbb3848949f2fd96f0ddddc84ea2", + "language": "Python", + "lines": 397, + "truncated": false, + "block": 9, + "row": 11372 + }, + { + "path": "Alignment and modeling tasks/B/airborne/alignment_2-3AS_lg_OS_5ms.py", + "sha256": "d1f1a7a6404ded3a6506b0a54633665132f2c0fad285c72f48493c1f42e6103b", + "language": "Python", + "lines": 399, + "truncated": false, + "block": 9, + "row": 11448 + }, + { + "path": "Alignment and modeling tasks/B/wideband/alignment_2-3AS_1_OS_25ms.py", + "sha256": "7c2f0a3f840bcd1d5e887b7c64d5d02d87cbc571872be36b91216d8f749f3b55", + "language": "Python", + "lines": 395, + "truncated": false, + "block": 9, + "row": 11367 + }, + { + "path": "Alignment and modeling tasks/B/wideband/alignment_2-3AS_1_OS_5ms.py", + "sha256": "921ed8fe42f86d01d8b04de9e5c68a1f32d14a11c62bc53546f0a623fb5c988d", + "language": "Python", + "lines": 399, + "truncated": false, + "block": 9, + "row": 11447 + }, + { + "path": "Alignment and modeling tasks/B/wideband/alignment_2-3AS_lg_OS_25ms.py", + "sha256": "7989aaf0bf867d4db85ef98b6462348fb331cbb3848949f2fd96f0ddddc84ea2", + "language": "Python", + "lines": 397, + "truncated": false, + "block": 9, + "row": 11372 + }, + { + "path": "Alignment and modeling tasks/B/wideband/alignment_2-3AS_lg_OS_5ms.py", + "sha256": "d1f1a7a6404ded3a6506b0a54633665132f2c0fad285c72f48493c1f42e6103b", + "language": "Python", + "lines": 399, + "truncated": false, + "block": 9, + "row": 11448 + }, + { + "path": "Alignment and modeling tasks/C/airborne/1MHz/alignment_2-3AS_1_OS_5ms.py", + "sha256": "921ed8fe42f86d01d8b04de9e5c68a1f32d14a11c62bc53546f0a623fb5c988d", + "language": "Python", + "lines": 399, + "truncated": false, + "block": 9, + "row": 11447 + }, + { + "path": "Alignment and modeling tasks/C/airborne/34kHz/alignment_2-3AS_1_OS_25ms.py", + "sha256": "7c2f0a3f840bcd1d5e887b7c64d5d02d87cbc571872be36b91216d8f749f3b55", + "language": "Python", + "lines": 395, + "truncated": false, + "block": 9, + "row": 11367 + }, + { + "path": "Alignment and modeling tasks/C/airborne/34kHz/alignment_2-3AS_1_OS_5ms.py", + "sha256": "921ed8fe42f86d01d8b04de9e5c68a1f32d14a11c62bc53546f0a623fb5c988d", + "language": "Python", + "lines": 399, + "truncated": false, + "block": 9, + "row": 11447 + }, + { + "path": "Alignment and modeling tasks/D/airborne/alignment_2-2AS_1_OS_5ms_training_final_layer.py", + "sha256": "d83eae62784a026e019f566958a458749871f7ffedd4efa2b9b4883ee643e3fe", + "language": "Python", + "lines": 438, + "truncated": false, + "block": 9, + "row": 11648 + }, + { + "path": "Alignment and modeling tasks/E/alignment_2-2AS_1_OS_5ms_training_final_layer.py", + "sha256": "d83eae62784a026e019f566958a458749871f7ffedd4efa2b9b4883ee643e3fe", + "language": "Python", + "lines": 438, + "truncated": false, + "block": 9, + "row": 11648 + }, + { + "path": "Alignment and modeling tasks/F/airborne/alignment_2-2AS_1_OS_5ms_training_from_start.py", + "sha256": "7425f4faf37932fc974ea91f86951c367f905d03975273c20220346be782b05f", + "language": "Python", + "lines": 431, + "truncated": false, + "block": 9, + "row": 11617 + }, + { + "path": "Alignment and modeling tasks/G/alignment_2-2AS_1_OS_5ms_globally_training.py", + "sha256": "403e8fa8c7db7844c54568499abda6402f3e1a29ad33213928c5cebe3a431b9e", + "language": "Python", + "lines": 440, + "truncated": false, + "block": 9, + "row": 11649 + }, + { + "path": "Alignment and modeling tasks/H/airborne/alignment_3-1AS_1_OS_25ms.py", + "sha256": "19094e2effa71e82582ab2b65cb6255912acb582ee76cd94e49ed41f6f3b3900", + "language": "Python", + "lines": 395, + "truncated": false, + "block": 9, + "row": 11364 + }, + { + "path": "Alignment and modeling tasks/H/airborne/alignment_3-1AS_1_OS_5ms.py", + "sha256": "091efeccf91ec172968c345715addcf1f4a98231e0804a08e942717aa13f1b54", + "language": "Python", + "lines": 399, + "truncated": false, + "block": 9, + "row": 11443 + }, + { + "path": "Alignment and modeling tasks/I/airborne/alignment_3-2AS_1_OS_25ms.py", + "sha256": "8c72983f6cdef17350e02d6c57d3c126d1d169c9c38f1678e257118e74dfa2f1", + "language": "Python", + "lines": 395, + "truncated": false, + "block": 9, + "row": 11365 + }, + { + "path": "Alignment and modeling tasks/I/airborne/alignment_3-2AS_1_OS_5ms.py", + "sha256": "93db0ae730c5e479c34da4db28afb1aa3f3e2faad596017df45dfe130add70b1", + "language": "Python", + "lines": 402, + "truncated": false, + "block": 9, + "row": 11468 + }, + { + "path": "Alignment and modeling tasks/J/airborne/alignment_3-3AS_1_OS_25ms.py", + "sha256": "dd579a8a9a0bb3e05926d1742e5ba8789c8e712aae6fb0641e9589012dd5f9d2", + "language": "Python", + "lines": 395, + "truncated": false, + "block": 9, + "row": 11366 + }, + { + "path": "Alignment and modeling tasks/J/airborne/alignment_3-3AS_1_OS_5ms.py", + "sha256": "cb41bff7376349d6e5e0f8c26e0d7a8ab7ef9199929a9abd0fb593c2aca19f5f", + "language": "Python", + "lines": 399, + "truncated": false, + "block": 9, + "row": 11444 + }, + { + "path": "Alignment and modeling tasks/K/Obtaining_the_arc_detection_model_based_on_OS_as_input.py", + "sha256": "4ca44d02d2f814e30fc06ca6057e19f97b9382571d8fe5ca5dd79819a7315978", + "language": "Python", + "lines": 322, + "truncated": false, + "block": 9, + "row": 11050 + }, + { + "path": "Alignment and modeling tasks/L/Obtaining_the_arc_detection_model_based_on_OS_as_input_H.py", + "sha256": "76d598032eafc864cae350712ea9ee39904c48728d5fda29ea371e0c8de992aa", + "language": "Python", + "lines": 316, + "truncated": false, + "block": 9, + "row": 11035 + }, + { + "path": "Alignment and modeling tasks/M/Obtaining_the_arc_detection_model_based_on_OS_as_input_D_no_normalization.py", + "sha256": "16cfe076713625176e70c6ec5dafba66aa6083e70e47128826404ba12c7a2f81", + "language": "Python", + "lines": 331, + "truncated": false, + "block": 9, + "row": 11149 + }, + { + "path": "Alignment and modeling tasks/N/airborne/10_alignment_2-3AS_1_OS_5ms_MNet2_16.py", + "sha256": "1a337a65d1a3ad5ffe2136cd9cf0abd804749156587e03f726c3fd35334bac08", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 11090 + }, + { + "path": "Alignment and modeling tasks/N/airborne/11_alignment_2-3AS_1_OS_5ms_MNet2_8.py", + "sha256": "7c33913ebbe9954495c4b4f193232e70525e910326e1a58e18ad637b4530b85e", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 11084 + }, + { + "path": "Alignment and modeling tasks/N/airborne/12_alignment_2-3AS_1_OS_5ms_MNet2_4.py", + "sha256": "1e107f9c20eceaea6e3f7b5164fb25be6338e4c39c199c2d3a280f7b5421c757", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 11083 + }, + { + "path": "Alignment and modeling tasks/N/airborne/13_alignment_2-3AS_1_OS_5ms_MNet2_2.py", + "sha256": "88a30e056ee6da39c1940902e57fe4d321d7bfb6ab48d5e9297e0044f9a1c55a", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 11085 + }, + { + "path": "Alignment and modeling tasks/N/airborne/14_alignment_2-3AS_1_OS_5ms_MNet2_1.py", + "sha256": "b664267ded8eac35d44d0c13806e35533aa9812a543f9ca2d884b7863e26514c", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 11087 + }, + { + "path": "Alignment and modeling tasks/N/airborne/1_alignment_2-3AS_1_OS_5ms_RResNet18.py", + "sha256": "189a9f1f2352c5ea66c51ca81228c21d84be693c1fb9d866479b1fce9ba924c4", + "language": "Python", + "lines": 293, + "truncated": false, + "block": 9, + "row": 11042 + }, + { + "path": "Alignment and modeling tasks/N/airborne/2_alignment_2-3AS_1_OS_5ms_RResNet10.py", + "sha256": "ede88af4269924a6836339b7cceed4fddfac0ba0beb08540b2c29b9846f68721", + "language": "Python", + "lines": 292, + "truncated": false, + "block": 9, + "row": 10994 + }, + { + "path": "Alignment and modeling tasks/N/airborne/3_alignment_2-3AS_1_OS_5ms_RMNet.py", + "sha256": "4e9aded19cc0b80e625efaa72e56477232b6b6b0064751b11d2582f4cef148c4", + "language": "Python", + "lines": 308, + "truncated": false, + "block": 9, + "row": 11125 + }, + { + "path": "Alignment and modeling tasks/N/airborne/4_alignment_2-3AS_1_OS_5ms_MNet4.py", + "sha256": "b0b68b7964f3cda4d44de35a8a1d68318dba9647bd87e5f87c99d861ded3c2cb", + "language": "Python", + "lines": 311, + "truncated": false, + "block": 9, + "row": 11145 + }, + { + "path": "Alignment and modeling tasks/N/airborne/5_alignment_2-3AS_1_OS_5ms_MNet3.py", + "sha256": "8d4b5da8e5db2a972fc73a80a8cbf03c02fc9cbdf791d1728ddfd80296eee199", + "language": "Python", + "lines": 308, + "truncated": false, + "block": 9, + "row": 11120 + }, + { + "path": "Alignment and modeling tasks/N/airborne/6_alignment_2-3AS_1_OS_5ms_RDNet41.py", + "sha256": "c1aac86fc916aeeeb6be5c002af154d8571235e292492ad98fa962920f7b0db9", + "language": "Python", + "lines": 399, + "truncated": false, + "block": 9, + "row": 11450 + }, + { + "path": "Alignment and modeling tasks/N/airborne/7_alignment_2-3AS_1_OS_5ms_RDNet13.py", + "sha256": "e5ee04b36c35ba59bd7172bf6909a7ad429d7f9e05ebb34335e5d1bcf4890a81", + "language": "Python", + "lines": 390, + "truncated": false, + "block": 9, + "row": 11393 + }, + { + "path": "Alignment and modeling tasks/N/airborne/8_alignment_2-3AS_1_OS_5ms_MNet2_64.py", + "sha256": "84e15f1269ebacf9919ca6c87e0ee146200aa003e0ab44499b3033f4fdb0b910", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 11092 + }, + { + "path": "Alignment and modeling tasks/N/airborne/9_alignment_2-3AS_1_OS_5ms_MNet2_32.py", + "sha256": "31a3c66ac70c80509d4b6b1dbdda23b190bbebdd4e041fb27a2d593e04609588", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 11091 + }, + { + "path": "Alignment and modeling tasks/O/airborne/1_alignment_2-3AS_1_OS_5ms_RDNet13 _9000.py", + "sha256": "d631ea4c71ee601959fe213769389f04f1085235ca954b18c790e58ab84d5785", + "language": "Python", + "lines": 390, + "truncated": false, + "block": 9, + "row": 11394 + }, + { + "path": "Alignment and modeling tasks/O/airborne/2_alignment_2-3AS_1_OS_5ms_RDNet13 _5000.py", + "sha256": "a8e5ec3483bd262d95c947d37fd5b12dfd6dbc649dd583d1a467a5b2076ca2a5", + "language": "Python", + "lines": 385, + "truncated": false, + "block": 9, + "row": 11391 + }, + { + "path": "Alignment and modeling tasks/O/airborne/3_alignment_2-3AS_1_OS_5ms_RDNet13 _1000.py", + "sha256": "c8b4a938f17fbfb60dddf987a05e021b7ae818b545313d327510f350592d8d93", + "language": "Python", + "lines": 385, + "truncated": false, + "block": 9, + "row": 11390 + }, + { + "path": "Alignment and modeling tasks/O/airborne/4_alignment_2-3AS_1_OS_5ms_RDNet13 _500.py", + "sha256": "13eb5d7903cee169ac14f34771545856144b3040550992d27df01f93dcb81b3a", + "language": "Python", + "lines": 385, + "truncated": false, + "block": 9, + "row": 11389 + }, + { + "path": "Alignment and modeling tasks/O/airborne/5_alignment_2-3AS_1_OS_5ms_RDNet13 _100.py", + "sha256": "70373c88f6c65bc0436c85edc475d93df165b6decc2f57d73eb20f619bdd8957", + "language": "Python", + "lines": 385, + "truncated": false, + "block": 9, + "row": 11388 + }, + { + "path": "Alignment and modeling tasks/O/airborne/6_alignment_2-3AS_1_OS_5ms_RDNet13 _50.py", + "sha256": "1e3de8cbca90bba389b6cbb5783a6bce3b317bdb4815f14b37027c7b479271d7", + "language": "Python", + "lines": 385, + "truncated": false, + "block": 9, + "row": 11387 + }, + { + "path": "Alignment and modeling tasks/P/airborne/1_alignment_2-3AS_1_OS_5ms_MNet2_1_9000.py", + "sha256": "dfa995f40f40d8cae76bd19f1875ac2aaeabfc441301e44c17007a4f75a2f3bf", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 11093 + }, + { + "path": "Alignment and modeling tasks/P/airborne/2_alignment_2-3AS_1_OS_5ms_MNet2_1_5000.py", + "sha256": "ba4a4e1bee4c4e6ac10af21f5862cb641d2eb46a7d0851939bab08e8f51a7744", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 11089 + }, + { + "path": "Alignment and modeling tasks/P/airborne/3_alignment_2-3AS_1_OS_5ms_MNet2_1_1000.py", + "sha256": "489bb5ea58a6f3166ffa8ff9be0f75ed2219afde372d19790ca8a10cea752612", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 11088 + }, + { + "path": "Alignment and modeling tasks/P/airborne/4_alignment_2-3AS_1_OS_5ms_MNet2_1_500.py", + "sha256": "9332c09dcc6243c71e7da7f2af2067e318b680623e8299618326de72bab32d8f", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 11086 + }, + { + "path": "Alignment and modeling tasks/P/airborne/5_alignment_2-3AS_1_OS_5ms_MNet2_1_100.py", + "sha256": "53e34d88c789086964728f3643c2364542637d074e8503105d401d57f73d2f67", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 11082 + }, + { + "path": "Alignment and modeling tasks/P/airborne/6_alignment_2-3AS_1_OS_5ms_MNet2_1_50.py", + "sha256": "925fc04f82bc1d3210961b8f326ddacbe1e3f7a81957177d342fbfa730657194", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 11081 + }, + { + "path": "Alignment and modeling tasks/Q/airborne/1_alignment_2-3AS_1_OS_5ms_RDNet41_P1to8.py", + "sha256": "f5bea822bd4728d699570a77b8e9a064e8e8a0bea13e9d90690c7b8451acee5f", + "language": "Python", + "lines": 406, + "truncated": false, + "block": 9, + "row": 11491 + }, + { + "path": "Alignment and modeling tasks/Q/airborne/2_alignment_2-3AS_1_OS_5ms_RDNet41_P1to4.py", + "sha256": "c9a9c451ecadca79aecc8fc75db87a13437fad63305d9d6b08f002690bfeb90c", + "language": "Python", + "lines": 406, + "truncated": false, + "block": 9, + "row": 11490 + }, + { + "path": "Alignment and modeling tasks/Q/airborne/3_alignment_2-3AS_1_OS_5ms_RDNet41_P1to2.py", + "sha256": "53ae1a5c816e2535d27527e6ae262ef95d5dcd9a3150a74bf0b459d52a2eacfc", + "language": "Python", + "lines": 406, + "truncated": false, + "block": 9, + "row": 11493 + }, + { + "path": "Alignment and modeling tasks/Q/airborne/4_alignment_2-3AS_1_OS_5ms_RDNet41_P1to1.py", + "sha256": "2d0eb078a4aa0236e16688625db8ff5c86598421631426c59fcdc0b58afc2b88", + "language": "Python", + "lines": 406, + "truncated": false, + "block": 9, + "row": 11492 + }, + { + "path": "Alignment and modeling tasks/Q/airborne/5_alignment_2-3AS_1_OS_5ms_RDNet41_P2to1.py", + "sha256": "a32055e5ca120948e97a27e4ba50d3e9fbfeebc34034a44edec386a18a38b7ff", + "language": "Python", + "lines": 406, + "truncated": false, + "block": 9, + "row": 11494 + }, + { + "path": "Alignment and modeling tasks/Q/airborne/6_alignment_2-3AS_1_OS_5ms_RDNet41_P4to1.py", + "sha256": "3762d69f5a99b3e99df2d00cbcf46003dd4de130a7392ada46fab633d3cee2a0", + "language": "Python", + "lines": 406, + "truncated": false, + "block": 9, + "row": 11488 + }, + { + "path": "Alignment and modeling tasks/Q/airborne/7_alignment_2-3AS_1_OS_5ms_RDNet41_P8to1.py", + "sha256": "be8451f341de8e2465270ae0ae3d64ed2a17b7d0849bddc34754625bfcca9f1a", + "language": "Python", + "lines": 406, + "truncated": false, + "block": 9, + "row": 11489 + }, + { + "path": "Alignment and modeling tasks/R/aireborne/1_alignment_2-3AS_1_OS_5ms_FDS_9000.py", + "sha256": "c665817b4b9ad795a27e8bcafeaf7ee14a5264ce7328a31550e3e4549d441811", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 9, + "row": 10202 + }, + { + "path": "Alignment and modeling tasks/R/aireborne/2_alignment_2-3AS_1_OS_5ms_FDS_5000.py", + "sha256": "6931e37b6b1994cf63f41ce86310d176909c3c57ed480bf32b66009615bbc635", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 9, + "row": 10201 + }, + { + "path": "Alignment and modeling tasks/R/aireborne/3_alignment_2-3AS_1_OS_5ms_FDS_1000.py", + "sha256": "f6eb055438079972c139c85de94452d723e39bd873df008f09d0f727adf57562", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 9, + "row": 10200 + }, + { + "path": "Alignment and modeling tasks/R/aireborne/4_alignment_2-3AS_1_OS_5ms_FDS_500.py", + "sha256": "8134756e31ae00c250fe0e2df16f29b6b6a6fb9da903f5e712c5b530195ef234", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 9, + "row": 10199 + }, + { + "path": "Alignment and modeling tasks/R/aireborne/5_alignment_2-3AS_1_OS_5ms_FDS_100.py", + "sha256": "559616d382274abc115b34eb152f6851aa2d763bd9fa6c4deebb57bd69ce860c", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 9, + "row": 10198 + }, + { + "path": "Alignment and modeling tasks/R/aireborne/6_alignment_2-3AS_1_OS_5ms_FDS_50.py", + "sha256": "c61d1f745a25f4d56b9868b35868bf8729382600646e6dc8b2a3d3506827aff9", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 9, + "row": 10197 + }, + { + "path": "Alignment and modeling tasks/S/airborne/alignment_2generated AS_1_label.py", + "sha256": "b852fc7509240aa452b20a0a1e48b4924b38b021147abbccb13eaef1c0c5fa5f", + "language": "Python", + "lines": 409, + "truncated": false, + "block": 9, + "row": 11425 + }, + { + "path": "Alignment and modeling tasks/T/alignment_2-3IS_label.py", + "sha256": "4fe1b44164cfaa6a89f1de74d34b5e3c90d45ff00004fa31ed5c6d036d3e6cce", + "language": "Python", + "lines": 288, + "truncated": false, + "block": 9, + "row": 10924 + }, + { + "path": "Alignment and modeling tasks/U/alignment_2-3OS_and_label.py", + "sha256": "4b28ff2bc9023bebee911a2236d9f94db172352a63c6d428eec819a039acde1a", + "language": "Python", + "lines": 287, + "truncated": false, + "block": 9, + "row": 10922 + }, + { + "path": "Alignment and modeling tasks/V/alignment_2-3feature&OS_and_label.py", + "sha256": "34a0806697b95d883574df96b97874843d4b9d4ba6fb3870a83372349eca312b", + "language": "Python", + "lines": 271, + "truncated": false, + "block": 9, + "row": 10862 + }, + { + "path": "Alignment and modeling tasks/W/Figs4d-f/alignment_features_and_labels.py", + "sha256": "50e250a21fd6c77371302dd5549d58deb276349ac440643d78017d9b04b17a4d", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 8963 + }, + { + "path": "Alignment and modeling tasks/W/SupplementaryFigs30j-l/alignment_features_and_labels.py", + "sha256": "c2c9d3595a63f78203235944558fd220d0518998dc58036963d99a354e96957e", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 9, + "row": 8991 + }, + { + "path": "Alignment and modeling tasks/X/SupplementaryFig31a-b/alignment_of_input_and_output.py", + "sha256": "ae38595626e77ab67e4e741949ff6f3013c17faa285dc96b472eb6aa686d6fd5", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 9023 + }, + { + "path": "Alignment and modeling tasks/X/SupplementaryFig31c-d/Alignment_of_features_and_labels.py", + "sha256": "1d1280a0b1bdb120492e2502357e577b34901602c783a4b0803faddd1a1814ca", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 9022 + }, + { + "path": "Alignment and modeling tasks/Y/alignment_2-3OS_and_feature.py", + "sha256": "e92da16fe762b0cf98a21fb49e1aa28b3d39004e7d0dd5006d2ce59e6c7615b5", + "language": "Python", + "lines": 307, + "truncated": false, + "block": 9, + "row": 11022 + }, + { + "path": "Class activation mapping/1_obtain_model.py", + "sha256": "0a365c68d664bfc6ee95372d71e7ca430042a0ebcdb80a9b2a071632ed8d0aab", + "language": "Python", + "lines": 476, + "truncated": false, + "block": 9, + "row": 11703 + }, + { + "path": "Class activation mapping/2_CAM_output_3C.py", + "sha256": "933ca5e5ee55d610580644d7c9d7dbbbc94bd6a485ab4f8f2b337addb2073feb", + "language": "Python", + "lines": 392, + "truncated": false, + "block": 9, + "row": 11410 + }, + { + "path": "Class activation mapping/3_flip_the _image.py", + "sha256": "e276f48f065442cd8aee37f2707cf138bf494da9ef292da7eb2598bca56d621b", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6944 + }, + { + "path": "Data preprocessing/1 optical signal/1_croppe_image.py", + "sha256": "b5fe7f1c4da7bc1440af23cd9d125ae04b28c2eb4a5763fd288334c14ac63762", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6965 + }, + { + "path": "Data preprocessing/1 optical signal/2_histogram_equalization_tif.py", + "sha256": "6a968ae6c105dbe65d58827f61856e922d81a5ebdfb2113ef8c77187312f5229", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7407 + }, + { + "path": "Data preprocessing/1 optical signal/3_dynamic_threshold_adaptivecutted_tif.py", + "sha256": "dce7f28040017a2e5400aeaec6084ca76ecb44e1d94be0d2347f6f410e7bc4eb", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7201 + }, + { + "path": "Data preprocessing/1 optical signal/4_feature_extraction_and_documentation.py", + "sha256": "ac9bb3bde12b8515e00214b1ea9943804b9250059c8333abdea1f7fcf98a962f", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 8758 + }, + { + "path": "Data preprocessing/2 Infrared signal/1_croppe_image.py", + "sha256": "a6af99225a83fda5db0029453f7d01577afb283b0940bcbb83c92748c3417333", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6958 + }, + { + "path": "Data preprocessing/2 Infrared signal/2_label_data.py", + "sha256": "2125b2259276bcf3fc4b477efa0a8b8a8cb5c71a660f27b4a5325893cd55a642", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7534 + }, + { + "path": "Data preprocessing/3 acoustic signal/current-carrying friction/airborne/frequency domain/1_data_output.py", + "sha256": "967fdc8e4a6d26d5b7362b22740ad617556530ba3df1c6ffaea1c117af37911e", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 9, + "row": 9874 + }, + { + "path": "Data preprocessing/3 acoustic signal/current-carrying friction/airborne/frequency domain/2_from_excel_to_pkl.py", + "sha256": "9374e5574c8cd49270eed260a44a7d3d11c375ad54477c31e642791263ad365a", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 9, + "row": 9451 + }, + { + "path": "Data preprocessing/3 acoustic signal/current-carrying friction/airborne/frequency domain/revised_thinkdsp.py", + "sha256": "a3b47b9eaf21384eeafe4ba099c29f1ea46a5cb79b51627ee80f060ee12e324a", + "language": "Python", + "lines": 1963, + "truncated": false, + "block": 9, + "row": 12486 + }, + { + "path": "Data preprocessing/3 acoustic signal/current-carrying friction/airborne/time frequency domain/1Mhz/data_output.py", + "sha256": "89cbf10af5c7a8431b7dea43d485c6f18ee96f1c8afeb29df703969cc04fefdd", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 10017 + }, + { + "path": "Data preprocessing/3 acoustic signal/current-carrying friction/airborne/time frequency domain/1Mhz/revised_thinkdsp.py", + "sha256": "a3b47b9eaf21384eeafe4ba099c29f1ea46a5cb79b51627ee80f060ee12e324a", + "language": "Python", + "lines": 1963, + "truncated": false, + "block": 9, + "row": 12486 + }, + { + "path": "Data preprocessing/3 acoustic signal/current-carrying friction/airborne/time frequency domain/34kHz/1_data_output.py", + "sha256": "62e828e4f076ddedca8961dcc63f2bcf480740cc8b2b9cc711c9219fe89a4dfa", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 9, + "row": 9990 + }, + { + "path": "Data preprocessing/3 acoustic signal/current-carrying friction/airborne/time frequency domain/34kHz/2_data_output_lg.py", + "sha256": "5adc55c140cf19c2ce0eee24cd865d0f1ca2e8d687b5dd5704bfba92fcd62026", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 9, + "row": 9495 + }, + { + "path": "Data preprocessing/3 acoustic signal/current-carrying friction/airborne/time frequency domain/34kHz/revised_thinkdsp.py", + "sha256": "a3b47b9eaf21384eeafe4ba099c29f1ea46a5cb79b51627ee80f060ee12e324a", + "language": "Python", + "lines": 1963, + "truncated": false, + "block": 9, + "row": 12486 + }, + { + "path": "Data preprocessing/3 acoustic signal/current-carrying friction/wideband/time frequency domain/1Mhz/1_data_output.py", + "sha256": "aec0c7bbeb9dc04219c1a2c544d871ccc69cea2258116451cf3a6632d02ee847", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 9, + "row": 10021 + }, + { + "path": "Data preprocessing/3 acoustic signal/current-carrying friction/wideband/time frequency domain/1Mhz/2_data_output_lg.py", + "sha256": "205cd3eea4c9d923ea06b8395d3e36563670ea1441d5614e9076868499211474", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 9998 + }, + { + "path": "Data preprocessing/3 acoustic signal/current-carrying friction/wideband/time frequency domain/1Mhz/revised_thinkdsp.py", + "sha256": "a3b47b9eaf21384eeafe4ba099c29f1ea46a5cb79b51627ee80f060ee12e324a", + "language": "Python", + "lines": 1963, + "truncated": false, + "block": 9, + "row": 12486 + }, + { + "path": "Data preprocessing/3 acoustic signal/the arc of an arc igniter/airborne/time frequency domain/34kHz/data_output.py", + "sha256": "b04ebc426bd7d12d8495c24fd2198b172ec949d36cf78ea0a4ea193db51743de", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 10066 + }, + { + "path": "Data preprocessing/3 acoustic signal/the arc of an arc igniter/airborne/time frequency domain/34kHz/revised_thinkdsp.py", + "sha256": "a3b47b9eaf21384eeafe4ba099c29f1ea46a5cb79b51627ee80f060ee12e324a", + "language": "Python", + "lines": 1963, + "truncated": false, + "block": 9, + "row": 12486 + }, + { + "path": "Demo/Figs4d-f/Generate_data_and_align.py", + "sha256": "7814e8bf6683a7e19a77d674e2adfb63c34410af7eaa08a37f279a173e57d0c5", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 9, + "row": 9505 + }, + { + "path": "Demo/Supplementary Figs31a-b/Generate_data_and_align.py", + "sha256": "9ecfe3b629bc953d7d164f1fc3bdb96bc9e1553cd1b926eae7f6ee48cf6af27e", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 9, + "row": 9440 + }, + { + "path": "LICENSE", + "sha256": "e6c3f08dd06515892fd60f4bb08c32af238599bc6ae8f04b8c8751a14d66d9a3", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2781 + }, + { + "path": "Optical Detection Task 1/OS1-1-1_D/Arc_detection_using_OS_D.py", + "sha256": "e08e25ab09511dff472e4af82bebdf02730ed196da0cc48979515d8cb7ff97b4", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9007 + }, + { + "path": "Optical Detection Task 1/OS1-1-2_D/Arc_detection_using_OS_D.py", + "sha256": "802764f74189e6dbe15f8ad7c949b5229f824f623a66ca5871ae755358b323f8", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9010 + }, + { + "path": "Optical Detection Task 1/OS1-1-3_D/Arc_detection_using_OS_D.py", + "sha256": "fa41e7aa37619a48a6cd68a0f39bc9bcebf31e808ca06e1a1e15005b825ba04f", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9012 + }, + { + "path": "Optical Detection Task 1/OS1-1-4_D/Arc_detection_using_OS_D.py", + "sha256": "3f2b9a00e4778869072d7e501d768e59ca3940dfc43e32e6cbd7126fc1fd6d37", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9003 + }, + { + "path": "Optical Detection Task 1/OS1-2-1_D/Arc_detection_using_OS_D.py", + "sha256": "21cfa3658df1a4c2231b4e36d42cf3d6a8f70cc1bfedf1a684b0591815fcf4ad", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 8999 + }, + { + "path": "Optical Detection Task 1/OS1-2-2_D/Arc_detection_using_OS_D.py", + "sha256": "fa3ca9d6f084b97b9cfcfe77f31e3ea790f248954763004c877c9b323ba0be89", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9009 + }, + { + "path": "Optical Detection Task 1/OS1-2-3_D/Arc_detection_using_OS_D.py", + "sha256": "22fd39523ec4409a8a5bc842fd6371ec01483660ec20794b663f58d15504700b", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9002 + }, + { + "path": "Optical Detection Task 1/OS1-2-4_D/Arc_detection_using_OS_D.py", + "sha256": "150dc6a990b7e224d6252f999e1686d56c381fe713e5d8e466d0f4f148b3c3fd", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 8998 + }, + { + "path": "Optical Detection Task 1/OS1-3-1_D/Arc_detection_using_OS_D.py", + "sha256": "b8a01c2f310d90aedc7bc23cce0e3cf93edac674972a196a0f6a47a1e1fdf452", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9001 + }, + { + "path": "Optical Detection Task 1/OS1-3-2_D/Arc_detection_using_OS_D.py", + "sha256": "8f64097558d057cea3bf066d7482430a390cdd13f7f29465f7704242db9a42c3", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9006 + }, + { + "path": "Optical Detection Task 1/OS1-3-3_D/Arc_detection_using_OS_D.py", + "sha256": "99f738ba2c23ced6bbc90bc307fcbed9862ea51d302d7ce186ed2088583030c8", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9011 + }, + { + "path": "Optical Detection Task 1/OS1-3-4_D/Arc_detection_using_OS_D.py", + "sha256": "5d7485697a51b6d21fadbcf42e061f1ebdb475bd7bd011649d6d05cd64ef6100", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9000 + }, + { + "path": "Optical Detection Task 2/OS3-1_D/Arc_detection_using_OS_D.py", + "sha256": "5b8ecbbe62ba481ba1769b3063f842136aa17daf132c1dee972b2952a50030b3", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9004 + }, + { + "path": "Optical Detection Task 2/OS3-1_H/Arc_detection_using_OS_H.py", + "sha256": "ad0ac110e618f0b92e86c8e586c6740fe5b889ebf8c4959868efc73792b704a1", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 8741 + }, + { + "path": "Optical Detection Task 2/OS3-1_R/Arc_detection_using_OS.py", + "sha256": "2e85695449b7bc03306212802957a8f0ae1f5f6c59ef95dd541cc8b809511ff3", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9020 + }, + { + "path": "Optical Detection Task 2/OS3-2_D/Arc_detection_using_OS_D.py", + "sha256": "8410a027f44ec113024329dde782bc97395ad57a3987c43d3b0cebfa47083563", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9005 + }, + { + "path": "Optical Detection Task 2/OS3-2_H/Arc_detection_using_OS_H.py", + "sha256": "34a982e6b7ba2c9bba8c7d060f40e47bbb295aba3506d64a37753a958176efb5", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 8740 + }, + { + "path": "Optical Detection Task 2/OS3-2_R/Arc_detection_using_OS.py", + "sha256": "14aff13d1247cc38d5662fcea2e7b444840f45988e130b9e5cdc07029be436f9", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9019 + }, + { + "path": "Optical Detection Task 2/OS3-3_D/Arc_detection_using_OS_D.py", + "sha256": "e704ae78c247ba689c5debbd6150694d54bb021b067f4d7fe169e4cefb3a7a5f", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9008 + }, + { + "path": "Optical Detection Task 2/OS3-3_H/Arc_detection_using_OS_H.py", + "sha256": "013acd59b216cae3c7e8a3b85adeea701d80f4af49f141cb03717d50be95a85a", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 8739 + }, + { + "path": "Optical Detection Task 2/OS3-3_R/Arc_detection_using_OS.py", + "sha256": "7956e7e69f9538402c7676477b4c1c5e414396f32bf991d3455de249e69fbf7d", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9021 + }, + { + "path": "README.md", + "sha256": "d29d13640d8603a85dec577c0d245d6b1c806b0170aec5548919a47232c3df0e", + "language": "Text", + "lines": 74, + "truncated": false, + "block": 9, + "row": 14609 + } + ] +} \ No newline at end of file diff --git a/manifests/2a/github.com__zhaohuaxishi1__convergent_divergent_foca_development.json b/manifests/2a/github.com__zhaohuaxishi1__convergent_divergent_foca_development.json new file mode 100644 index 0000000000000000000000000000000000000000..2fa574624200fe2746513471f4bff991db9ac659 --- /dev/null +++ b/manifests/2a/github.com__zhaohuaxishi1__convergent_divergent_foca_development.json @@ -0,0 +1,309 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/zhaohuaxishi1/convergent_divergent_foca_development", + "url": "https://github.com/zhaohuaxishi1/Convergent_Divergent_FOCA_Development", + "host": "github.com", + "commit": "19949c692e9ac547326de9b0efe420b568c216b9", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "dc522488ce31166e700df0c9afe2f5a1f07149e51813bdbe92ad193a990a4cf0", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2806 + }, + { + "path": "README.md", + "sha256": "1e4ff7cecc5a2b8c248282aa9eb16c682ddedf97561b7853fdd0e56cf2fa175c", + "language": "Text", + "lines": 153, + "truncated": false, + "block": 9, + "row": 14706 + }, + { + "path": "dependence/MultipleRegression_NFolds_Sort/MultipleRegression_NFolds_Sort.m", + "sha256": "29ae81409da40bffe6d9acb344ffbca17dc53e985168579926431065c81f0ba5", + "language": "MATLAB", + "lines": 168, + "truncated": false, + "block": 9, + "row": 5189 + }, + { + "path": "dependence/SVR/SVR_NFolds_RandomCV.m", + "sha256": "a4ed5b21faa8feeac0a027b0eeb50d66712ae46b8ab2c0211f34ab09f11f6c4e", + "language": "MATLAB", + "lines": 144, + "truncated": false, + "block": 9, + "row": 5044 + }, + { + "path": "dependence/SVR/SVR_NFolds_RandomCVBin.m", + "sha256": "b8bf57a84fecf6846faffce5258cad87b181e8407bac77ab6cbcf70cf9a87b8d", + "language": "MATLAB", + "lines": 166, + "truncated": false, + "block": 9, + "row": 5163 + }, + { + "path": "dependence/SVR/SVR_NFolds_RandomCV_CSelect.m", + "sha256": "5f0ee6b91577d07f9ce9a7018eddff879b6e88e86f74c4b3665fd0459c8c6826", + "language": "MATLAB", + "lines": 142, + "truncated": false, + "block": 9, + "row": 5210 + }, + { + "path": "dependence/SVR/SVR_NFolds_Sort.m", + "sha256": "81661fb5b67e2c5f524a3a051a8ba613fe3aff1143ee542e748d95a8df8f6746", + "language": "MATLAB", + "lines": 158, + "truncated": false, + "block": 9, + "row": 5133 + }, + { + "path": "dependence/SVR/SVR_NFolds_Sort_CSelect.m", + "sha256": "94be01e6c6e25463d09c68b1ec2be0fb628759c7dab4dbb45e74cd289ec009f7", + "language": "MATLAB", + "lines": 151, + "truncated": false, + "block": 9, + "row": 5174 + }, + { + "path": "dependence/SVR/SVR_NFolds_Sort_Permutation.m", + "sha256": "c433b027aa4f8e0e664476b6a19dc5ef315f9a4087b3ecd3a41ac9f0e03882b9", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 9, + "row": 4485 + }, + { + "path": "dependence/SVR/SVR_NFolds_Sort_Permutation_Sub.m", + "sha256": "03c6f0ba3ca583a091497993d3757b4a4a0e2b839887c3888f9f00ec5082a4dd", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3734 + }, + { + "path": "dependence/SVR/W_Calculate_SVR.m", + "sha256": "5c3b74a925bd0dd9300e1888e26e0a4281da010cc365ff1d9ac0a293574196a1", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4383 + }, + { + "path": "dependence/SVR/W_Calculate_SVR_CSelect.m", + "sha256": "b971ca1bc2bcd31f011714b24c3078744c0d2732a568c9c815b31a6dd5f7bb62", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 9, + "row": 4587 + }, + { + "path": "dependence/SVR/W_Calculate_SVR_LOOCV.m", + "sha256": "cfd575e3de6f4035c8c8ee517e11e6d0c1146af20e0ef2e0b6909aefa5b1465a", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 9, + "row": 4419 + }, + { + "path": "dependence/SVR/W_Calculate_SVR_PCA.m", + "sha256": "1e65017d445dc11434a35ec32a366872344cafa1827c2c24b946da41dfe2d5f9", + "language": "MATLAB", + "lines": 104, + "truncated": false, + "block": 9, + "row": 4717 + }, + { + "path": "dependence/computeCohen_d.m", + "sha256": "2338f1e497a955deecba1222a59fdffc8c3a6f4d102765738fac9355b4a79fac", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 9, + "row": 4310 + }, + { + "path": "dependence/customcolormap/customcolormap.m", + "sha256": "1ffce05f72287cf183475d0dd3b85901595753956cb992114ead1c80614a42bb", + "language": "MATLAB", + "lines": 146, + "truncated": false, + "block": 9, + "row": 5314 + }, + { + "path": "dependence/customcolormap/customcolormap_preset.m", + "sha256": "a3e8c896be49bd2a9124bd3f9596f276847f50f336c25160f12981917ad85859", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 4093 + }, + { + "path": "s1_1_generate_group_templates.m", + "sha256": "f7890d7443069be07f1213fe085b4f5eb5a2f287f6c077f81aeb4ddf31312d6a", + "language": "MATLAB", + "lines": 104, + "truncated": false, + "block": 9, + "row": 4854 + }, + { + "path": "s1_2_generate_individual_networks.m", + "sha256": "75ec05b06592b69addd3b20aa62c749fd4cf34559ebfdcd7d8cadecb26292106", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 4732 + }, + { + "path": "s2_generate_individual_topography.m", + "sha256": "c7753bf10a7d93fe20d90be8c350094da74bb74efe1c7fed06e2c6894367d4d9", + "language": "MATLAB", + "lines": 98, + "truncated": false, + "block": 9, + "row": 4831 + }, + { + "path": "s3_compute_foca_matrix.m", + "sha256": "d06f2be7be94a29c3d0330f1ebda9b73da04f16a861453bc5cce3132cd5baf48", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4668 + }, + { + "path": "s4_consistency_variability_analysis.m", + "sha256": "b8239f818577840a5d82237d0765cc278c3206d4846890dceb4288b7c4b756a6", + "language": "MATLAB", + "lines": 156, + "truncated": false, + "block": 9, + "row": 5259 + }, + { + "path": "s5_hierarchical_clustering_and_modular_summary.m", + "sha256": "8dffe09657d2f12248a55562848a48c08bf608c757c14556ac924c382e89ce89", + "language": "MATLAB", + "lines": 114, + "truncated": false, + "block": 9, + "row": 5052 + }, + { + "path": "s6_brain_axes_prediction_FOCA.m", + "sha256": "5310320f43cd26e03cbc39f659920b079ff4e344c4cc1ef51c88d90273bb507e", + "language": "MATLAB", + "lines": 180, + "truncated": false, + "block": 9, + "row": 5315 + }, + { + "path": "s7_1_hierarchical_clustering_dHCP_comparison.m", + "sha256": "acc3e98ce2d302c16e52db6554be0475d65abbfe15f2493b868f0498f1a90a18", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 9, + "row": 4944 + }, + { + "path": "s7_2_visualize_developmental_difference_FOCA_CohenD.m", + "sha256": "5d5adcca81f72a9c53cc8587dbe3374a41a73ee8de7433a65a8bcb526ae50644", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 4582 + }, + { + "path": "s8_1_neonatal_FOCA_GAM_analysis.R", + "sha256": "82284ddb6fb96d3e6498fc84a46f5f8c1902047d6946027cad4bbeceecbb045c", + "language": "R", + "lines": 104, + "truncated": false, + "block": 9, + "row": 13233 + }, + { + "path": "s8_2_age_effects_neonatal_FOCA_GAM.m", + "sha256": "1df2ac10d8f831a9c6602761692a1fee90568c1b06238e44218e115af4dd6b8d", + "language": "MATLAB", + "lines": 77, + "truncated": false, + "block": 9, + "row": 4557 + }, + { + "path": "s8_3_behavior_prediction_neonatal_FOCA_GLM.m", + "sha256": "9e924fd0297cc26cc02af0f6c5d1bf63ecb49eebf02f86be88d532a31adbee25", + "language": "MATLAB", + "lines": 90, + "truncated": false, + "block": 9, + "row": 4718 + }, + { + "path": "s9_1_FOCA_vs_FC_stability_comparison.m", + "sha256": "de55515b9d1e606b1d3e95544022b9121cd4f2170aba1931eecce199018c6e54", + "language": "MATLAB", + "lines": 142, + "truncated": false, + "block": 9, + "row": 5075 + }, + { + "path": "s9_2_FOCA_vs_FC_individual_dissimilarity.m", + "sha256": "f4b97b1fe064291f4b63c7033cecaede41e9046052cd78e2c253b8a8b8b19a0f", + "language": "MATLAB", + "lines": 133, + "truncated": false, + "block": 9, + "row": 5010 + }, + { + "path": "s9_3_NeonatalAgePrediction_SVR_FOCA_dHCP.m", + "sha256": "63d6b036b12d1ae24c3ba8f56cd1fe074363df95320259a52d686f6072cc418e", + "language": "MATLAB", + "lines": 101, + "truncated": false, + "block": 9, + "row": 4881 + }, + { + "path": "s9_4_NeonatalAgePrediction_SVR_FC_dHCP.m", + "sha256": "dafe0e798bb4888251113b3f608bf2b22554f39a89c63ed18c1cdbe2139465d2", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 9, + "row": 4866 + } + ] +} \ No newline at end of file diff --git a/manifests/2b/github.com__mathildefogperez__manuscript-iglon5-d1.json b/manifests/2b/github.com__mathildefogperez__manuscript-iglon5-d1.json new file mode 100644 index 0000000000000000000000000000000000000000..b6f1989455083a9d44a3d46105b143e0dc841f99 --- /dev/null +++ b/manifests/2b/github.com__mathildefogperez__manuscript-iglon5-d1.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/mathildefogperez/manuscript-iglon5-d1", + "url": "https://github.com/MathildeFogPerez/manuscript-iglon5-D1", + "host": "github.com", + "commit": "23551bd9ba3c38857783c639862206a92eb6ff10", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "4fa40a5e5f94eaa6f41a5362d2d59103a6030a97ccc88d4f7930abdbaf47e4f2", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2843 + }, + { + "path": "README.md", + "sha256": "713def05e76e2320853538cde27e024cf9d756ee5da24eda1f46e614750773b1", + "language": "Text", + "lines": 63, + "truncated": false, + "block": 9, + "row": 14513 + }, + { + "path": "scripts/BCR_analysis_D1_PUB.Rmd", + "sha256": "a4e2c51e88956c8ee84666c6fb3351ed392d2ac0e77dfe0c1faa4f847c9a8083", + "language": "R", + "lines": 1074, + "truncated": false, + "block": 9, + "row": 13830 + }, + { + "path": "scripts/mergeHeavyLightForScRep_PUB.Rmd", + "sha256": "da0a1d903775d9ae39ca36abfeab16f4ec82de4b52711dba0d800256b279053f", + "language": "R", + "lines": 349, + "truncated": false, + "block": 9, + "row": 13647 + } + ] +} \ No newline at end of file diff --git a/manifests/2c/github.com__mahdi-bashiri__ms3seg.json b/manifests/2c/github.com__mahdi-bashiri__ms3seg.json new file mode 100644 index 0000000000000000000000000000000000000000..591b28863e44e97e4b3dc9792122e9c979ef0f55 --- /dev/null +++ b/manifests/2c/github.com__mahdi-bashiri__ms3seg.json @@ -0,0 +1,246 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/mahdi-bashiri/ms3seg", + "url": "https://github.com/Mahdi-Bashiri/MS3SEG", + "host": "github.com", + "commit": "c265bae327691c279ff6651a98e264d70103def7", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "7377226fb135a687b994b72bd3b447324d4cb08c2581a8602398e5d8c8b86c90", + "language": "License", + "lines": 21, + "truncated": false, + "block": 6, + "row": 1591 + }, + { + "path": "README.md", + "sha256": "38bddad75b24146a4c2646f2f9ef0463fb9f02b97b4f201f08015b1b6c215212", + "language": "Text", + "lines": 832, + "truncated": false, + "block": 9, + "row": 14746 + }, + { + "path": "dataset_analysis/file_renamer.py", + "sha256": "76fba22913711b64cf0315d32ce26c9a4a1c3dc0ff54cf71b47ca7290472257a", + "language": "Python", + "lines": 630, + "truncated": false, + "block": 9, + "row": 12058 + }, + { + "path": "dataset_analysis/ms_demographics_table.py", + "sha256": "36afb925ed57b38331359c8f292d343fda674663a820ad6f67b6f67153c9aa63", + "language": "Python", + "lines": 253, + "truncated": false, + "block": 9, + "row": 10509 + }, + { + "path": "dataset_analysis/ms_imaging_table.py", + "sha256": "b76e37f56800c5817f1e3f0b27bfebd7d502e720024dbc843d376e5dc9e8c978", + "language": "Python", + "lines": 337, + "truncated": false, + "block": 9, + "row": 11267 + }, + { + "path": "dataset_analysis/ms_mask_analysis.py", + "sha256": "6b4ab203ca222d04306f3965665919dea20bab4ed98f2ea237a6063427a3dc01", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 10691 + }, + { + "path": "dataset_analysis/patient_encoder_v2.py", + "sha256": "918ec38207c481b3b5a315b82387e2bbdac761e4ded483b289b52a6446cafa0e", + "language": "Python", + "lines": 577, + "truncated": false, + "block": 9, + "row": 12028 + }, + { + "path": "models/__init__.py", + "sha256": "1a6a63f326beeaf6a23135343d8626cab7604fe9d798264d73ba9efff6268c7f", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7169 + }, + { + "path": "models/swin_unetr.py", + "sha256": "62af3d49b0cffe1ea9c31a1d2684d38b713c9a8f0c523a4e83c36f5579f0e42f", + "language": "Python", + "lines": 245, + "truncated": false, + "block": 9, + "row": 10457 + }, + { + "path": "models/unet.py", + "sha256": "36ddde8363f7801c8a3bbccdeaa2165e256411859326df7e7e557fe2e04e00c8", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 9, + "row": 8868 + }, + { + "path": "models/unet_plusplus.py", + "sha256": "53d42a46f852d67383d12c63290727b84974b2b6a2013077c977dd31376cfe17", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 9, + "row": 9648 + }, + { + "path": "models/unetr.py", + "sha256": "07c56d6b25735fa0c3a68416c29710772e051916d31e4258eaa63d1d00b833f1", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 9, + "row": 9688 + }, + { + "path": "old_scripts/loss_functions.py", + "sha256": "2f72b2d00bdfc6750e6f3885cbccfedd0a7200c855b8a708e0d804d7015b449a", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 8948 + }, + { + "path": "old_scripts/metrics_functions.py", + "sha256": "0ce2c585db3736eb041e99a788517ef2fa11a6aa22e11937cab15b0cb4037aac", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 9878 + }, + { + "path": "old_scripts/model_architecturs.py", + "sha256": "6c9a719e770cb8268a2335a7f01659405de9ba078cd8c06e84a186b4996dd891", + "language": "Python", + "lines": 1195, + "truncated": false, + "block": 9, + "row": 12504 + }, + { + "path": "old_scripts/models_runner.py", + "sha256": "d9083f5d80e2268b5145deca25a19e2f8fc84c6f53149bedef54cbdbbb644254", + "language": "Python", + "lines": 2141, + "truncated": false, + "block": 9, + "row": 12652 + }, + { + "path": "preprocessing/anonymization.py", + "sha256": "31552c5f4eb62fe768c91d5390b90b1cac8785944002a161783a8bdb161f65cb", + "language": "Python", + "lines": 255, + "truncated": false, + "block": 9, + "row": 10864 + }, + { + "path": "preprocessing/coregistration_and_brain_extraction.py", + "sha256": "6fba0a59d41c5522e8226c2120b93ba9f3bf0cf8673f15ce0e863e8040a6bd6a", + "language": "Python", + "lines": 588, + "truncated": false, + "block": 9, + "row": 11986 + }, + { + "path": "preprocessing/dicom_to_nifti.py", + "sha256": "331598ff9bed2f8ee5d180a57d7dff134e1a06512551ff95e14c4bedef572e51", + "language": "Python", + "lines": 583, + "truncated": false, + "block": 9, + "row": 12111 + }, + { + "path": "preprocessing/standardization.py", + "sha256": "aad09694cd75df105500d3d8463b8475e71dd2dd678688edb9316ff6385cb1a3", + "language": "Python", + "lines": 179, + "truncated": false, + "block": 9, + "row": 9903 + }, + { + "path": "training/evaluate.py", + "sha256": "6387272a56a93c643da320260ae46807fa0d30bc495b5776fffb01c278e089ef", + "language": "Python", + "lines": 334, + "truncated": false, + "block": 9, + "row": 11053 + }, + { + "path": "training/train.py", + "sha256": "6bf8375d5de97a867ad18af63b2c9221ba17cd2357f9e2c2fcd856ca0a2b2dc8", + "language": "Python", + "lines": 357, + "truncated": false, + "block": 9, + "row": 11144 + }, + { + "path": "utils/__init__.py", + "sha256": "a0b44d175e05d8e7b5d4a1a384bee0fab241be860b44c169eae5933956059da4", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 6822 + }, + { + "path": "utils/data_loader.py", + "sha256": "cb3835061191a853aa0ad4e1a5a5f69b16e69ed56737933be0a3effe2c00c474", + "language": "Python", + "lines": 296, + "truncated": false, + "block": 9, + "row": 10854 + }, + { + "path": "utils/metrics.py", + "sha256": "73b196331860212a1eb3934563c15a2979d8954aac05165ccf3b430136913f31", + "language": "Python", + "lines": 307, + "truncated": false, + "block": 9, + "row": 10802 + }, + { + "path": "utils/visualization.py", + "sha256": "73f010a601274a1fb4479fbf129364c7ec4e2503e5ce41f8dfc1bd0da6d6e273", + "language": "Python", + "lines": 348, + "truncated": false, + "block": 9, + "row": 11043 + } + ] +} \ No newline at end of file diff --git a/manifests/2c/zenodo__15791186.json b/manifests/2c/zenodo__15791186.json new file mode 100644 index 0000000000000000000000000000000000000000..1dcc9ec135f23ac4fa782916f0f0813cfc50e6c6 --- /dev/null +++ b/manifests/2c/zenodo__15791186.json @@ -0,0 +1,147 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:15791186", + "url": "https://doi.org/10.5281/zenodo.15791186", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "b1e04ba79bfc495dcf37f32af07c4e13d91ca780877f51459c458bc1abb94c69", + "language": "License", + "lines": 43, + "truncated": false, + "block": 9, + "row": 2891 + }, + { + "path": "README.md", + "sha256": "e3e9f65197971024223ee756c248364933590123edf0d43fa5f87faab0639ff9", + "language": "Text", + "lines": 122, + "truncated": false, + "block": 9, + "row": 14653 + }, + { + "path": "run_all.py", + "sha256": "2e06d5648374b40582ea9af45a1a3dffc3f509bc1b50502f5be90f4d9efc6ba6", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 7052 + }, + { + "path": "scripts/run_analyse_trajectories.py", + "sha256": "66b630f2f9da4bb4b1e929794993cfd056d42c02061fece55ade521644a231da", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 9500 + }, + { + "path": "scripts/run_emg_and_eyemovement.py", + "sha256": "8ec4594d8a5ef390fd4875e5d036c75fc6f24d5bcaff7788550675942a1d7e43", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 8137 + }, + { + "path": "scripts/run_offline_brain_area_analysis.py", + "sha256": "e423c8015210918c44b25b6e8c82ffad45e0be5d3419a6656e2c4c33adc9959a", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8987 + }, + { + "path": "scripts/run_success_rate.py", + "sha256": "4a5894e154fa57b938b961070ca5651e759b8c2c750c45651416bba874073bac", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 9193 + }, + { + "path": "scripts/run_time_to_target.py", + "sha256": "d9f29856b73647da26dc85145365779ed746ab4a4b29aa7875d620a6b8537ea3", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 9, + "row": 8708 + }, + { + "path": "scripts/run_within_session_performance_trend.py", + "sha256": "c0cf560f90adeeca0a6c2d9740ae77e575274f084eb51a6d2663af625ee230a7", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7939 + }, + { + "path": "src/analysis.py", + "sha256": "1e1fff94af392aa9c1d7c420c7caf19e69dd95beacb7f35d0a8b8b2517b574dc", + "language": "Python", + "lines": 698, + "truncated": false, + "block": 9, + "row": 12259 + }, + { + "path": "src/load.py", + "sha256": "b8c827c4b262387d937bd76388223f83f4d59667e1e28074c679a4cb7af28d23", + "language": "Python", + "lines": 227, + "truncated": false, + "block": 9, + "row": 10705 + }, + { + "path": "src/metrics.py", + "sha256": "45cdd763f87deace63fa0eceba523357768a04efeab76274b58a45dc4dd90afb", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 9665 + }, + { + "path": "src/plots.py", + "sha256": "1f173f5bf3de4b879a006a01fafa351452f780550e16c052583bceb22d67c9ec", + "language": "Python", + "lines": 672, + "truncated": false, + "block": 9, + "row": 12161 + }, + { + "path": "src/tables.py", + "sha256": "3e5f05fbdaea18184a4cfc4a4037b0f5456a2ccacb0d9ccc1bd5981c119c218d", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 8050 + }, + { + "path": "src/utils.py", + "sha256": "5e18576daf6fff25a9a703a43b2312f548e9136ca76eb810a7b1262402d7730c", + "language": "Python", + "lines": 582, + "truncated": false, + "block": 9, + "row": 12103 + } + ] +} \ No newline at end of file diff --git a/manifests/2c/zenodo__18350609.json b/manifests/2c/zenodo__18350609.json new file mode 100644 index 0000000000000000000000000000000000000000..433e2c227a534161043511b296a6ab5e50002582 --- /dev/null +++ b/manifests/2c/zenodo__18350609.json @@ -0,0 +1,417 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18350609", + "url": "https://zenodo.org/records/18350609", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "ba35be7271d0112ad144c61b55c995925d58144535586ed683d1a9bde6263e8e", + "language": "License", + "lines": 22, + "truncated": false, + "block": 9, + "row": 2845 + }, + { + "path": "README.md", + "sha256": "26bc992dff0fa4e1fa435977c943707485451de613242f0f554b719097037f13", + "language": "Text", + "lines": 218, + "truncated": false, + "block": 9, + "row": 14705 + }, + { + "path": "examples.ipynb", + "sha256": "d5344e63b648d04af375a5c43626d3d580fb700462c095e8db7559e1016ac927", + "language": "Jupyter", + "lines": 217, + "truncated": false, + "block": 9, + "row": 2396 + }, + { + "path": "run.py", + "sha256": "7151f99578b7d8d4f445eb82b333ff7c0df19bfa4d30c2920ceeec1e94a761b2", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 9, + "row": 9235 + }, + { + "path": "yammbs/__init__.py", + "sha256": "d1ccda78d3f0ae3c3c2552e23a3f6fc755baf862443f52fff9bb0403c7037f9a", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 9, + "row": 6453 + }, + { + "path": "yammbs/_base/array.py", + "sha256": "21bf96c7f7ff4c82c3e3b426aa754a73636c840a209bbcf323af7065d551524c", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6871 + }, + { + "path": "yammbs/_base/base.py", + "sha256": "09360e1171607d2b2c5ba8de00aae58c9c458d7bee251cff897b8855fed65528", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 8779 + }, + { + "path": "yammbs/_db.py", + "sha256": "22e662830b008deb598b492b10da4a31f0b175f9473f972c681e16cdb53b3d2b", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 9, + "row": 9614 + }, + { + "path": "yammbs/_forcebalance.py", + "sha256": "1940b74b31c41169116f0542270335c444d8191f913b89c873a4e65c68ceafc3", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 7562 + }, + { + "path": "yammbs/_forcefields.py", + "sha256": "fade97325cd970907c795328d8736721b443096ef14c3ab255f9f1cfc4e8ea20", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 8065 + }, + { + "path": "yammbs/_mdanalysis.py", + "sha256": "c98ed40d8a544475c8b1a2ee27bcb6cd38e7a366627e0bd8e7fece7c9c07c2e8", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8493 + }, + { + "path": "yammbs/_minimize.py", + "sha256": "579c10348c209a16f6bceff1045867356389a579a4ed357591f2b66924bd988a", + "language": "Python", + "lines": 214, + "truncated": false, + "block": 9, + "row": 10102 + }, + { + "path": "yammbs/_molecule.py", + "sha256": "162ee27d162456a8997de4b1bf9279cea1fa272d1cc4fd1b5d75cf5f74283563", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6849 + }, + { + "path": "yammbs/_session.py", + "sha256": "6c800798504b053a0e78ed60579545127600458c62ac32eeaa383e264e099f84", + "language": "Python", + "lines": 214, + "truncated": false, + "block": 9, + "row": 9931 + }, + { + "path": "yammbs/_store.py", + "sha256": "a1e56aab2a02713b93dfe25b0534b6333c9e93db18b502a89df235e30219b349", + "language": "Python", + "lines": 939, + "truncated": false, + "block": 9, + "row": 12273 + }, + { + "path": "yammbs/_tests/conftest.py", + "sha256": "aecfcc629bc5f76991365c0afb7b5886e7dbf576eba7631ab095fb894f32e7d7", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 9, + "row": 8941 + }, + { + "path": "yammbs/_tests/data/make_tiny_opt.py", + "sha256": "454d1fa5144a483164712c6facdac60479373cae834a3b51dc5b2aee1902a5ee", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6751 + }, + { + "path": "yammbs/_tests/unit_tests/test_analysis.py", + "sha256": "897451eff21c56ccd8b39e3d057b17c7e71c5ec8c475fbb9e9600b9f0f33dbb8", + "language": "Python", + "lines": 296, + "truncated": false, + "block": 9, + "row": 10808 + }, + { + "path": "yammbs/_tests/unit_tests/test_checkmol.py", + "sha256": "4907ceffd17e9fb14eff2a48ae31aaf5472919f7b9574d16d5c17c908c482ca8", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 6831 + }, + { + "path": "yammbs/_tests/unit_tests/test_forcefields.py", + "sha256": "576df686ac79a82a6404357167313a5d3d37ed5f13720cd5dc2e3f1c107ad80a", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7147 + }, + { + "path": "yammbs/_tests/unit_tests/test_inputs.py", + "sha256": "0794a9d1fbe3cc1b7d7d40032ee5b96241d3e996c598f21bb7e8e4c5d197fe3e", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7319 + }, + { + "path": "yammbs/_tests/unit_tests/test_mdanalysis.py", + "sha256": "9a59ea6c7ac49eed1c13f350dd4aaa2db05b2b615002a658d02f819955e3b5b4", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6964 + }, + { + "path": "yammbs/_tests/unit_tests/test_minimize.py", + "sha256": "8aa83d9e8e5fb8c1dee338d068ccb4c90606bc2f3213c451893dc79aedb02d3d", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 9, + "row": 10260 + }, + { + "path": "yammbs/_tests/unit_tests/test_models.py", + "sha256": "77e8c01781e45c4a010077050a1ecc475fd18affb3770ab3f3fa737db5389abe", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7253 + }, + { + "path": "yammbs/_tests/unit_tests/test_store.py", + "sha256": "f37b5e02750c0a8e2197a14f824e1d93037af057f0c9bcb7e1f85eaa99471c26", + "language": "Python", + "lines": 386, + "truncated": false, + "block": 9, + "row": 11113 + }, + { + "path": "yammbs/_tests/unit_tests/torsion/test_minimize.py", + "sha256": "6d76c28bfb75f470c934ec999555f25e07f4bc6ed1f21dfb02c0896fa000b1e7", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 9, + "row": 9590 + }, + { + "path": "yammbs/_tests/unit_tests/torsion/test_store.py", + "sha256": "360b068b3be46911480126681a7d72f69a6f22a0be588e90b96c0f84dd811d6d", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 9403 + }, + { + "path": "yammbs/_types.py", + "sha256": "40bd794afff2b123896273ae0f608ebaf38155c5e9e26f7fa763b9b636ae4a90", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6125 + }, + { + "path": "yammbs/analysis.py", + "sha256": "cf2f72b856a7b96ff40581c88583a4a99ba3067e1a582a8dd5da0a4484b658e7", + "language": "Python", + "lines": 382, + "truncated": false, + "block": 9, + "row": 11203 + }, + { + "path": "yammbs/checkmol.py", + "sha256": "1966a039891039ed4deda8598f49db39539b6539020891c9166f5b002de1724a", + "language": "Python", + "lines": 522, + "truncated": false, + "block": 9, + "row": 11947 + }, + { + "path": "yammbs/exceptions.py", + "sha256": "41b3c1e2a8f9514a974f76c4b16ba78258d8e0a2dfc21a694c0d2a9f7821a712", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6380 + }, + { + "path": "yammbs/inputs.py", + "sha256": "e830821190e978f61b73ec634ec7424520125ab2bfc2ee82498426433bcf3643", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8072 + }, + { + "path": "yammbs/models.py", + "sha256": "edff1dfede72dc28f244c1a018264fa35b975490198bc51f7cea3e9209805208", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 9, + "row": 8995 + }, + { + "path": "yammbs/outputs.py", + "sha256": "34f6c913a5cf8fbdbec053eda83178b6ae198858d231ed06deb9c7466d287f8d", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 7700 + }, + { + "path": "yammbs/scripts/__init__.py", + "sha256": "b7dce622f0d1946f0c91ab25940d17a036b61fbc6774d36fde15f1fbf3fe426e", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6100 + }, + { + "path": "yammbs/scripts/run_torsion_comparisons.py", + "sha256": "1408db3725064e964fef4e8b96e2e428df8a7fc7a3a289a42c383bc9064fd5e8", + "language": "Python", + "lines": 431, + "truncated": false, + "block": 9, + "row": 11296 + }, + { + "path": "yammbs/torsion/__init__.py", + "sha256": "54315ef9f8ccf55281c8d1c3cd1faac81515c5f9e03c0bd9b602a2f00851acec", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6361 + }, + { + "path": "yammbs/torsion/_db.py", + "sha256": "f21545ca6752cf20565ade4932b751d04129acfad34e5f40e87f3585d2d080e8", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 8067 + }, + { + "path": "yammbs/torsion/_minimize.py", + "sha256": "f135ec4d177d4ab3c68abce583d839e7d8a3bc910e9e9a34995ad1e646eae470", + "language": "Python", + "lines": 238, + "truncated": false, + "block": 9, + "row": 10427 + }, + { + "path": "yammbs/torsion/_session.py", + "sha256": "875b2039548227d795c54839fe0acaf4fb03a84a6bb64949cb86328b0a95c040", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7386 + }, + { + "path": "yammbs/torsion/_store.py", + "sha256": "6a2e351d61dcf9ab9841e18f957076d75f4a7b194d8af4d8feabfffd439c2103", + "language": "Python", + "lines": 930, + "truncated": false, + "block": 9, + "row": 12298 + }, + { + "path": "yammbs/torsion/analysis.py", + "sha256": "fd7ba116906f122f1bf660060f3c151e5ef3b35fe50b404a2bdd59290e6f9ec7", + "language": "Python", + "lines": 196, + "truncated": false, + "block": 9, + "row": 9802 + }, + { + "path": "yammbs/torsion/inputs.py", + "sha256": "2b7e57a0e0d2c740817a5b0ead21de3fcf7a2836af63722a2f13f445db877ca3", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 9, + "row": 8921 + }, + { + "path": "yammbs/torsion/models.py", + "sha256": "1acfce71cdefa0072eef8f5f9f06454029c91631a6583f976657b7769286e571", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7478 + }, + { + "path": "yammbs/torsion/outputs.py", + "sha256": "3424fcc025ee2eeaccb07917db5aa47936d0c6440cf1c73d7d86b5e78f801c47", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 7946 + } + ] +} \ No newline at end of file diff --git a/manifests/2f/github.com__obasktools__obask.json b/manifests/2f/github.com__obasktools__obask.json new file mode 100644 index 0000000000000000000000000000000000000000..0c21be5964d8b92d0c5a0d303daf7aadf3ce13f1 --- /dev/null +++ b/manifests/2f/github.com__obasktools__obask.json @@ -0,0 +1,75 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/obasktools/obask", + "url": "https://github.com/OBASKTools/obask/tree/v0.0.1", + "host": "github.com", + "commit": "18f3c6f8e49ecdac742e3074322249d5597c5904", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4", + "language": "License", + "lines": 201, + "truncated": false, + "block": 1, + "row": 2216 + }, + { + "path": "README.md", + "sha256": "b77d9a36814ee0e861556184860b7ab9c100378f0080c343347d0c204f79b39c", + "language": "Text", + "lines": 44, + "truncated": false, + "block": 9, + "row": 14553 + }, + { + "path": "solr_config.sh", + "sha256": "1e193e5df4d808dabd272bd597f6d5ebca402ba5c69483d80cb2ecc6f716cb10", + "language": "Shell", + "lines": 260, + "truncated": false, + "block": 9, + "row": 14387 + }, + { + "path": "solr_index.sh", + "sha256": "91f4b87af54198ed0d6127a01b6df9309c440a5d8b6bdfaded48e214063ca399", + "language": "Shell", + "lines": 17, + "truncated": false, + "block": 9, + "row": 14072 + }, + { + "path": "solr_init.sh", + "sha256": "4b3552e2fa54bccac64f8a696905c3b1ddebfa579febba7f827cd952705d14ca", + "language": "Shell", + "lines": 23, + "truncated": false, + "block": 9, + "row": 14099 + }, + { + "path": "src/test_neo2owl_config.py", + "sha256": "d66e066764053dabcf3c284ddb2099eb835d5f06481cf9a396de4f99504fa261", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6436 + }, + { + "path": "src/utils/schema_test_tools.py", + "sha256": "992c9305eb5d3a981f97de2f4f59d2158d38a96754ef215a165e739ea926e139", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 9267 + } + ] +} \ No newline at end of file diff --git a/manifests/2f/github.com__poulet-lab__bpod_capacitiveportinterface.json b/manifests/2f/github.com__poulet-lab__bpod_capacitiveportinterface.json new file mode 100644 index 0000000000000000000000000000000000000000..f6e8f50284e2b4b1188380e4c58f0b30dbaa3c46 --- /dev/null +++ b/manifests/2f/github.com__poulet-lab__bpod_capacitiveportinterface.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/poulet-lab/bpod_capacitiveportinterface", + "url": "https://github.com/poulet-lab/Bpod_CapacitivePortInterface", + "host": "github.com", + "commit": "e029ee31d512a1f382579a4d4fc7a83e314dd638", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "098252e534e204a7f80fbb3e79e25aa9afdbcee17e9a526719609a5c0c550482", + "language": "Text", + "lines": 21, + "truncated": false, + "block": 9, + "row": 14584 + } + ] +} \ No newline at end of file diff --git a/manifests/30/github.com__ophelie-bci__ibci_analysis.json b/manifests/30/github.com__ophelie-bci__ibci_analysis.json new file mode 100644 index 0000000000000000000000000000000000000000..2ce5596062c6322d89f3431e8f85c8062f9016ff --- /dev/null +++ b/manifests/30/github.com__ophelie-bci__ibci_analysis.json @@ -0,0 +1,147 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ophelie-bci/ibci_analysis", + "url": "https://github.com/ophelie-bci/iBCI_analysis/tree/v1.0", + "host": "github.com", + "commit": "6a198cec614d11e54fc7bc34a47c7270c3713da0", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "b1e04ba79bfc495dcf37f32af07c4e13d91ca780877f51459c458bc1abb94c69", + "language": "License", + "lines": 43, + "truncated": false, + "block": 9, + "row": 2891 + }, + { + "path": "README.md", + "sha256": "fddb5ef44f89d709f8bb0b25533ca6e54ce99761a4af9fc7aeafbbbfb41434f6", + "language": "Text", + "lines": 122, + "truncated": false, + "block": 9, + "row": 14654 + }, + { + "path": "run_all.py", + "sha256": "2e06d5648374b40582ea9af45a1a3dffc3f509bc1b50502f5be90f4d9efc6ba6", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 7052 + }, + { + "path": "scripts/run_analyse_trajectories.py", + "sha256": "66b630f2f9da4bb4b1e929794993cfd056d42c02061fece55ade521644a231da", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 9500 + }, + { + "path": "scripts/run_emg_and_eyemovement.py", + "sha256": "8ec4594d8a5ef390fd4875e5d036c75fc6f24d5bcaff7788550675942a1d7e43", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 8137 + }, + { + "path": "scripts/run_offline_brain_area_analysis.py", + "sha256": "e423c8015210918c44b25b6e8c82ffad45e0be5d3419a6656e2c4c33adc9959a", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8987 + }, + { + "path": "scripts/run_success_rate.py", + "sha256": "4a5894e154fa57b938b961070ca5651e759b8c2c750c45651416bba874073bac", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 9193 + }, + { + "path": "scripts/run_time_to_target.py", + "sha256": "d9f29856b73647da26dc85145365779ed746ab4a4b29aa7875d620a6b8537ea3", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 9, + "row": 8708 + }, + { + "path": "scripts/run_within_session_performance_trend.py", + "sha256": "c0cf560f90adeeca0a6c2d9740ae77e575274f084eb51a6d2663af625ee230a7", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7939 + }, + { + "path": "src/analysis.py", + "sha256": "1e1fff94af392aa9c1d7c420c7caf19e69dd95beacb7f35d0a8b8b2517b574dc", + "language": "Python", + "lines": 698, + "truncated": false, + "block": 9, + "row": 12259 + }, + { + "path": "src/load.py", + "sha256": "b8c827c4b262387d937bd76388223f83f4d59667e1e28074c679a4cb7af28d23", + "language": "Python", + "lines": 227, + "truncated": false, + "block": 9, + "row": 10705 + }, + { + "path": "src/metrics.py", + "sha256": "45cdd763f87deace63fa0eceba523357768a04efeab76274b58a45dc4dd90afb", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 9665 + }, + { + "path": "src/plots.py", + "sha256": "1f173f5bf3de4b879a006a01fafa351452f780550e16c052583bceb22d67c9ec", + "language": "Python", + "lines": 672, + "truncated": false, + "block": 9, + "row": 12161 + }, + { + "path": "src/tables.py", + "sha256": "3e5f05fbdaea18184a4cfc4a4037b0f5456a2ccacb0d9ccc1bd5981c119c218d", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 8050 + }, + { + "path": "src/utils.py", + "sha256": "5e18576daf6fff25a9a703a43b2312f548e9136ca76eb810a7b1262402d7730c", + "language": "Python", + "lines": 582, + "truncated": false, + "block": 9, + "row": 12103 + } + ] +} \ No newline at end of file diff --git a/manifests/30/github.com__qiyunzhu__woltka.json b/manifests/30/github.com__qiyunzhu__woltka.json new file mode 100644 index 0000000000000000000000000000000000000000..451c523acfe5eb13830753480d8c3a29ac2506a2 --- /dev/null +++ b/manifests/30/github.com__qiyunzhu__woltka.json @@ -0,0 +1,309 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/qiyunzhu/woltka", + "url": "https://github.com/qiyunzhu/woltka/blob/master/doc/wolsop.sh", + "host": "github.com", + "commit": "42df8869da98af3721b4bd29c40ef9b28d925118", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "52eef5352e2681e660272fa8d0af61e52675422dffa7385030ab3bf8a23bc669", + "language": "License", + "lines": 29, + "truncated": false, + "block": 9, + "row": 2883 + }, + { + "path": "README.md", + "sha256": "951da103d271115c4a98a7bae9c916bb961e74e1a02e149b2b366d0ed0322fc8", + "language": "Text", + "lines": 176, + "truncated": false, + "block": 9, + "row": 14708 + }, + { + "path": "doc/wolsop.sh", + "sha256": "7a123a5742f44d34e85814f7dbabfb70cfe3a2aceda4fc632939ee6a2684b75e", + "language": "Shell", + "lines": 283, + "truncated": false, + "block": 9, + "row": 14367 + }, + { + "path": "woltka/__init__.py", + "sha256": "539759f49c3f8de8ad5aacdf4069603b8231bafe0c8732e73fa787c1c9a20d4f", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6730 + }, + { + "path": "woltka/align.py", + "sha256": "e7195eb3f59231de6b03842f56d8f828a52e6472591e6389cda017008da35e8c", + "language": "Python", + "lines": 1213, + "truncated": false, + "block": 9, + "row": 12198 + }, + { + "path": "woltka/biom.py", + "sha256": "48aaf2a4a2a2386de72acd4c587527ad480301607b653243a3daab3de0d38bf1", + "language": "Python", + "lines": 351, + "truncated": false, + "block": 9, + "row": 10699 + }, + { + "path": "woltka/classify.py", + "sha256": "4224fd28184d2ff530f9610cd06cd7231b50404caad8989312090c317b6ab57c", + "language": "Python", + "lines": 317, + "truncated": false, + "block": 9, + "row": 10324 + }, + { + "path": "woltka/cli.py", + "sha256": "f01591f8120fb29eb636a8c0cfe4409ad37e48ff80fc758222b44227fcd71032", + "language": "Python", + "lines": 341, + "truncated": false, + "block": 9, + "row": 11242 + }, + { + "path": "woltka/file.py", + "sha256": "5acc3781e9f4ce3aaf3335f6c07192668118f04caa8746044e63cc6c0894d978", + "language": "Python", + "lines": 522, + "truncated": false, + "block": 9, + "row": 11261 + }, + { + "path": "woltka/ordinal.py", + "sha256": "8a50dca714b44bd55d34c1118b9ef9c4ff39b5e0403281bc59ea63302e5949c7", + "language": "Python", + "lines": 896, + "truncated": false, + "block": 9, + "row": 12151 + }, + { + "path": "woltka/q2/_format.py", + "sha256": "dcc457ec414b7b99b92b59660663111d2d4935b95f13e1d4f28f7e621d526e31", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 9, + "row": 7821 + }, + { + "path": "woltka/q2/_transformer.py", + "sha256": "f3abd226a6f1c4600f5cf2136a7272bc9820db6169cb042ea50c3710af53abc5", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7375 + }, + { + "path": "woltka/q2/_type.py", + "sha256": "9a1f363e3cabb43319ad242296bb6a4a82305a9e86545640ad0c2f1738f8892a", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6973 + }, + { + "path": "woltka/q2/plugin.py", + "sha256": "ffa9252b97e9a71628ea0e2ddbad664804ad3be83de8b29280b6df3a95168c55", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 9732 + }, + { + "path": "woltka/q2/plugin_setup.py", + "sha256": "5f86cb4c0d75ff725ffdb77972b5c0e403988c1f86c85e31a5ea03aa12e73f0f", + "language": "Python", + "lines": 198, + "truncated": false, + "block": 9, + "row": 10439 + }, + { + "path": "woltka/range.py", + "sha256": "8f0935113c4ffd774c09c19bb57f289e57c053fbd74296ab1172b8c97411b2d3", + "language": "Python", + "lines": 254, + "truncated": false, + "block": 9, + "row": 10259 + }, + { + "path": "woltka/table.py", + "sha256": "38ffad742da727886fbc3367cda2c686e067c3ea1d2e4686388bdb8917556310", + "language": "Python", + "lines": 775, + "truncated": false, + "block": 9, + "row": 11931 + }, + { + "path": "woltka/tests/test_align.py", + "sha256": "fcd7c560e58c67bfd4120b4d6ccf54d8c71097fbf0ad41d143f39309cb97475a", + "language": "Python", + "lines": 623, + "truncated": false, + "block": 9, + "row": 12062 + }, + { + "path": "woltka/tests/test_biom.py", + "sha256": "ce1c527cf08f7d7575ec3846832cadd7eb7b8b3525b1aa6bce4fde3301996d68", + "language": "Python", + "lines": 429, + "truncated": false, + "block": 9, + "row": 11688 + }, + { + "path": "woltka/tests/test_classify.py", + "sha256": "779cbac67f8bec7d2d44334c1a3bfcf2b790158a527ad43cbcb040cdc52d59f7", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 9, + "row": 10287 + }, + { + "path": "woltka/tests/test_cli.py", + "sha256": "94f2bbf229e194312ac02a3fb0c859f5368b9de98fd01386488d95650f777427", + "language": "Python", + "lines": 263, + "truncated": false, + "block": 9, + "row": 10996 + }, + { + "path": "woltka/tests/test_file.py", + "sha256": "48df70f13c8a7d5f5c22412fe62bcbdfabe92e5514888241b045d3f78e4dee82", + "language": "Python", + "lines": 430, + "truncated": false, + "block": 9, + "row": 11399 + }, + { + "path": "woltka/tests/test_ordinal.py", + "sha256": "c0110ecc62f809085e8198f7601969ae30684c2c6a8737be236268c23e9c72f9", + "language": "Python", + "lines": 533, + "truncated": false, + "block": 9, + "row": 11832 + }, + { + "path": "woltka/tests/test_range.py", + "sha256": "aa58b90c606b4df6ec04135e09f6cb114d961b66e0e02bb97eeda0e9e1a7e022", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 9, + "row": 10496 + }, + { + "path": "woltka/tests/test_table.py", + "sha256": "dc160926a1f4b03c0c8097fe348caf6c24426fd11bfd7884588de0dab5d2d202", + "language": "Python", + "lines": 877, + "truncated": false, + "block": 9, + "row": 12305 + }, + { + "path": "woltka/tests/test_tools.py", + "sha256": "cfaf4ab4bdf87e2bb04562db5c4915b1413a434dc765a327182f4e5ba345c3e7", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 9, + "row": 11017 + }, + { + "path": "woltka/tests/test_tree.py", + "sha256": "9bc2b290ddb4e97c5b84e5932eb46ecefb9a35b1605c146d3ae330085d6d94c8", + "language": "Python", + "lines": 557, + "truncated": false, + "block": 9, + "row": 12029 + }, + { + "path": "woltka/tests/test_util.py", + "sha256": "8b00417615da94b25655af1eab7c064b965849e4040845866644821536b52ced", + "language": "Python", + "lines": 212, + "truncated": false, + "block": 9, + "row": 10376 + }, + { + "path": "woltka/tests/test_workflow.py", + "sha256": "bb977c225a5b5ee642c12ea78df942c9b1bc1f7b25a3e9763f99623a8ce841d0", + "language": "Python", + "lines": 704, + "truncated": false, + "block": 9, + "row": 12144 + }, + { + "path": "woltka/tools.py", + "sha256": "d1fc7fddb3bd5225ff7b5d4f4a0ede8f3e88872988672a60106efd88012e8e6d", + "language": "Python", + "lines": 317, + "truncated": false, + "block": 9, + "row": 10703 + }, + { + "path": "woltka/tree.py", + "sha256": "806674f702c278df6155dd9bc0e1304a93a1cb64d079788a1295f6517932df5f", + "language": "Python", + "lines": 566, + "truncated": false, + "block": 9, + "row": 11353 + }, + { + "path": "woltka/util.py", + "sha256": "dee44a624259dca87118e2ce86d2ea68e339839f9d4d4fc22a489a234b330082", + "language": "Python", + "lines": 464, + "truncated": false, + "block": 9, + "row": 10833 + }, + { + "path": "woltka/workflow.py", + "sha256": "50329db6f4f092c04ef42cacf9701baab9ef5f0bc5d8e68374cfa23b3b681a50", + "language": "Python", + "lines": 1205, + "truncated": false, + "block": 9, + "row": 12377 + } + ] +} \ No newline at end of file diff --git a/manifests/30/github.com__xthomaswang__asd_facereg_modeling_cnn.json b/manifests/30/github.com__xthomaswang__asd_facereg_modeling_cnn.json new file mode 100644 index 0000000000000000000000000000000000000000..7444cb0f17de6874adb7e1a5cf03eb16e07a762b --- /dev/null +++ b/manifests/30/github.com__xthomaswang__asd_facereg_modeling_cnn.json @@ -0,0 +1,273 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/xthomaswang/asd_facereg_modeling_cnn", + "url": "https://github.com/xthomaswang/ASD_FaceReg_Modeling_CNN", + "host": "github.com", + "commit": "f768ce15ace9b82e24d52ca7afe632ebfbc56d50", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "1ba4786655be8a9762807108d5eccd16ace4f9c0e160e4389ac9e4221a672594", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2783 + }, + { + "path": "README.md", + "sha256": "9521afd36fad2af5b02ce223cc7cc273715bf02aced70c432073ceab0d380a38", + "language": "Text", + "lines": 107, + "truncated": false, + "block": 9, + "row": 14652 + }, + { + "path": "large-scale-cornet/notebooks/CORnet.ipynb", + "sha256": "17039712062f32cadb8b20efe5bdb3d6c6ddfd5b0257b9ed4cf7dc36edf6c1f2", + "language": "Jupyter", + "lines": 4064, + "truncated": false, + "block": 9, + "row": 2746 + }, + { + "path": "large-scale-cornet/rcode/ACC_data_EIB.R", + "sha256": "369b9c5425b4dee731463ae841b5094865cea1b7be7c9b2d701983699a653722", + "language": "R", + "lines": 283, + "truncated": false, + "block": 9, + "row": 13627 + }, + { + "path": "large-scale-cornet/rcode/Repres_data_EIB.R", + "sha256": "3a6206f87efbf6e66a36e400fe5d0948efab513009a36a3c24418b736b354e19", + "language": "R", + "lines": 138, + "truncated": false, + "block": 9, + "row": 13344 + }, + { + "path": "large-scale-cornet/src/__init__.py", + "sha256": "990e44e6eead70bde540c16af8b4d36496960103aac814e8677c7d026896b926", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6578 + }, + { + "path": "large-scale-cornet/src/analysis/__init__.py", + "sha256": "6ff116a62202e3f3380803d3d6fdafada72a82a9546f89de54adbf7d8ecabd7e", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 7595 + }, + { + "path": "large-scale-cornet/src/analysis/rsa.py", + "sha256": "4a31530f31a70bbaa58c4033f1e72e22762b1a21d52156b98333e9601cc169cc", + "language": "Python", + "lines": 870, + "truncated": false, + "block": 9, + "row": 12254 + }, + { + "path": "large-scale-cornet/src/analysis/visualization.py", + "sha256": "18791ebf136109a552ca500203217fb99152d31a003e91eb5800346f825794cb", + "language": "Python", + "lines": 1614, + "truncated": false, + "block": 9, + "row": 12542 + }, + { + "path": "large-scale-cornet/src/data/__init__.py", + "sha256": "58a2601d0769eb66d3c8fdf3ef8417daedb4f940e740a00b9f86e88971fce3ba", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 6962 + }, + { + "path": "large-scale-cornet/src/data/loader.py", + "sha256": "3b78746868a6375f826178c344a192809b44f25b58c0a1365fd537157f3de308", + "language": "Python", + "lines": 487, + "truncated": false, + "block": 9, + "row": 11818 + }, + { + "path": "large-scale-cornet/src/data/preprocessing.py", + "sha256": "b84083171a57129046436e4dca0574ed10ac56e10b1aa5f423d6efdc2e39ffaf", + "language": "Python", + "lines": 610, + "truncated": false, + "block": 9, + "row": 11886 + }, + { + "path": "large-scale-cornet/src/models/__init__.py", + "sha256": "c36c8fd2faa3273ed38a519f3917948983c2163ddfac4a27a944f2d8132fc7ef", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6625 + }, + { + "path": "large-scale-cornet/src/models/cornet.py", + "sha256": "59a17757eaa7deca43259457801b0951250ffdfb29181d8bd0b1d721570643cc", + "language": "Python", + "lines": 401, + "truncated": false, + "block": 9, + "row": 11453 + }, + { + "path": "large-scale-cornet/src/models/custom_layers.py", + "sha256": "2d8027827359ae0c61b48bd30282d49723e235b3c8dbe6102888e1edccb4025c", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 6940 + }, + { + "path": "large-scale-cornet/src/utils/__init__.py", + "sha256": "ee33669b56650422577f83fc6ca5d356f4fbc59d870c9847ae175e19cb452cdf", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 9, + "row": 6592 + }, + { + "path": "large-scale-cornet/src/utils/helpers.py", + "sha256": "7daaed8f3d5845406a64764f49156c12b2d4d3c2cd18cfa2b4d854d755b3185a", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 7950 + }, + { + "path": "large-scale-cornet/src/utils/io.py", + "sha256": "bcd4d5decf56e95ddc8da81fbf74454502e0d3991cec296d52ed290bb2a9cc93", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 7647 + }, + { + "path": "small-scale-custom-cnn/analysis/ACC_data.R", + "sha256": "522a626c69db3f0f242084c63eacb285ea7439058f817e1250c48653ee826824", + "language": "R", + "lines": 155, + "truncated": false, + "block": 9, + "row": 13481 + }, + { + "path": "small-scale-custom-cnn/analysis/EIBResult/JsonToCsv.ipynb", + "sha256": "ad1ae6120798db122520d1409486f273e662b1c7d0dfd2d750838133f2bf7833", + "language": "Jupyter", + "lines": 68, + "truncated": false, + "block": 9, + "row": 2232 + }, + { + "path": "small-scale-custom-cnn/analysis/EIBResult/supplementary_material/ACC_data_0.R", + "sha256": "9f18ff7c0d4c66890daa204320889fb0344600e222bb2e4cb53712c8ac8cd78d", + "language": "R", + "lines": 173, + "truncated": false, + "block": 9, + "row": 13441 + }, + { + "path": "small-scale-custom-cnn/analysis/EIBResult/supplementary_material/csv_1000_categorical/EIB_analysis.R", + "sha256": "cf93ef5b4b60241ab0a445f158b59846d6d8d6589132a30325114777fac8c0f8", + "language": "R", + "lines": 100, + "truncated": false, + "block": 9, + "row": 13261 + }, + { + "path": "small-scale-custom-cnn/analysis/GSNResult/JsonToCsv.ipynb", + "sha256": "061b9d5f569df6187b2772a68658f93e3c66b599a043f22a05d58bbbfa303709", + "language": "Jupyter", + "lines": 73, + "truncated": false, + "block": 9, + "row": 2233 + }, + { + "path": "small-scale-custom-cnn/analysis/Inactive_units_data.R", + "sha256": "e0106317a65915a0a612e7219a2798aa742cc941caa5c755fce055c997a1e7bc", + "language": "R", + "lines": 80, + "truncated": false, + "block": 9, + "row": 13223 + }, + { + "path": "small-scale-custom-cnn/analysis/Repres_data_EIB.R", + "sha256": "ee4b7a139c10eff25e1454e613b92e5d81cbfd8a7982a4ff45bfdfa9a63bcb45", + "language": "R", + "lines": 610, + "truncated": false, + "block": 9, + "row": 13837 + }, + { + "path": "small-scale-custom-cnn/analysis/Repres_data_GSN.R", + "sha256": "b2f2f9896c1b04d595ca174b17b2916059ac438a9b6dea6be20939360f8e1291", + "language": "R", + "lines": 591, + "truncated": false, + "block": 9, + "row": 13836 + }, + { + "path": "small-scale-custom-cnn/analysis/filter_slope_data.py", + "sha256": "a599a957450bb03f5174d00368a8cb051e56dcdabd8a27e57faf9e19c6850e19", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8415 + }, + { + "path": "small-scale-custom-cnn/notebooks/01_EIB_experiment.ipynb", + "sha256": "c7b8f94cf804731b6ef996697d310bd29d83d48e444c937a0ae5b6920d8233c2", + "language": "Jupyter", + "lines": 231, + "truncated": false, + "block": 9, + "row": 2424 + }, + { + "path": "small-scale-custom-cnn/notebooks/02_IN_experiment.ipynb", + "sha256": "354b099536920a1d6326f898b8ca5e05e922d32695a7da7e3c6367902b757792", + "language": "Jupyter", + "lines": 223, + "truncated": false, + "block": 9, + "row": 2418 + } + ] +} \ No newline at end of file diff --git a/manifests/30/zenodo__16909564.json b/manifests/30/zenodo__16909564.json new file mode 100644 index 0000000000000000000000000000000000000000..e3c53537826214402b39d38306442354f22e1494 --- /dev/null +++ b/manifests/30/zenodo__16909564.json @@ -0,0 +1,210 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:16909564", + "url": "https://doi.org/10.5281/zenodo.16909564", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "d5c0ecede8ffa63779dcb3cf7dcdf6de8b8511eebfa28dc00ff336f860fd8419", + "language": "Text", + "lines": 16, + "truncated": false, + "block": 9, + "row": 14483 + }, + { + "path": "numpy_model/DMS_task.py", + "sha256": "eb731f12e15b404eec31ded7cf4bce61c7146e05bc07d067d31dafd94fae4d93", + "language": "Python", + "lines": 480, + "truncated": false, + "block": 9, + "row": 11236 + }, + { + "path": "numpy_model/cart-pole plot.ipynb", + "sha256": "017ec3945f5ca234ac2f56eb24ec8702da7e305025b45a3987a68fc4d4b70e0a", + "language": "Jupyter", + "lines": 364, + "truncated": false, + "block": 9, + "row": 2501 + }, + { + "path": "numpy_model/cartpole/cartpole.py", + "sha256": "6130e7fb549cb3457922d8b2b53dee67786d6194bd17e23cb2f8a05e723fa9b0", + "language": "Python", + "lines": 224, + "truncated": false, + "block": 9, + "row": 10320 + }, + { + "path": "numpy_model/cartpole/controller.py", + "sha256": "7beef5ec9a6092de8d43878b6c4f6eea05729604f9c35e516d833a68989dc8db", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8172 + }, + { + "path": "numpy_model/generate figs from runs.ipynb", + "sha256": "16dc4b58ebe7a7e680c38c456d537f78df02c40636667a141c9c2871a9aa362e", + "language": "Jupyter", + "lines": 1612, + "truncated": false, + "block": 9, + "row": 2726 + }, + { + "path": "numpy_model/run_Fig3_multilayer_comparison.sh", + "sha256": "63558e1263eebb97051bdebd4ba7a5cd1ffd3eae683a48161422c3169f913285", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 9, + "row": 14003 + }, + { + "path": "numpy_model/run_Fig4_populations.sh", + "sha256": "956eb42af86a54000c6dc5b251c2f3b567ee47d7c4b990fa94073fef1e230a16", + "language": "Shell", + "lines": 5, + "truncated": false, + "block": 9, + "row": 13907 + }, + { + "path": "numpy_model/run_Fig5_noise.sh", + "sha256": "e13908c0eafc3c84831c397ac096c0ccb51671f815045708526f0458e995ef0d", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 9, + "row": 13947 + }, + { + "path": "numpy_model/run_FigA1_multilayer_comparison_hierarchical.sh", + "sha256": "22e3e7476d82a2896ac29135ae15c7a175bb1f93f78731ebcfad593d3f1e50fe", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 9, + "row": 14008 + }, + { + "path": "numpy_model/run_FigA2_multilayer_comparison_ideal_lat_inh.sh", + "sha256": "3c387190782f8868870f65c58ad5e9cab374a93d1198d802cb2fa0c45fc5776f", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 9, + "row": 14009 + }, + { + "path": "numpy_model/run_FigC1_nonlinear_dPC.sh", + "sha256": "364e333b2dad67185dea9b092cc0f214d2981cb6487ce96bd8eb5124b2b29e7b", + "language": "Shell", + "lines": 29, + "truncated": false, + "block": 9, + "row": 14164 + }, + { + "path": "numpy_model/runner.py", + "sha256": "3ed8c11208e117e0b63bb859c1b2773b42999947d5fb81be2b24ed61ccf9a39b", + "language": "Python", + "lines": 257, + "truncated": false, + "block": 9, + "row": 10561 + }, + { + "path": "numpy_model/slurm_script.sh", + "sha256": "efb6013775d8a6d9c9fc31cb5285cc42017da89b1473126587758eb161f777cd", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 13998 + }, + { + "path": "numpy_model/src/compare.py", + "sha256": "79e5384af11488596bd4bc992f34952ec8d25cff8689ce02d41eb199b683e776", + "language": "Python", + "lines": 528, + "truncated": false, + "block": 9, + "row": 11728 + }, + { + "path": "numpy_model/src/init_MC.py", + "sha256": "8ea665814a793c926658c7c8313a820a4f60a86c4a281c5a4116c9a9e884e254", + "language": "Python", + "lines": 613, + "truncated": false, + "block": 9, + "row": 11912 + }, + { + "path": "numpy_model/src/init_signals.py", + "sha256": "d340da7efc5bd10fba2d33d35219b026687dcd5714e865129872835d58ec97b6", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 9, + "row": 8746 + }, + { + "path": "numpy_model/src/microcircuit.py", + "sha256": "8e28ac65a3dc44de9d939931521f003125f248004222aeb9d30e5bbe93426fea", + "language": "Python", + "lines": 2444, + "truncated": false, + "block": 9, + "row": 12632 + }, + { + "path": "numpy_model/src/plot_exp.py", + "sha256": "c4f2c40304b9d9fa983a3a45e0523c0f3549a1687c54f56c4317552619f8efb1", + "language": "Python", + "lines": 720, + "truncated": false, + "block": 9, + "row": 12141 + }, + { + "path": "numpy_model/src/run_exp.py", + "sha256": "3922e546c7418e1eb7195aa365ca108a44adaa3d171fe0fb51bf29affbcea5f6", + "language": "Python", + "lines": 258, + "truncated": false, + "block": 9, + "row": 10610 + }, + { + "path": "numpy_model/src/save_exp.py", + "sha256": "9884a498a4a1b6f62226bddb5138b97c0b1242650e3c7f1f6cd9196a9b323b9c", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6615 + }, + { + "path": "numpy_model/varphi' transfer.ipynb", + "sha256": "abd7c827842840de846b9adcc8783234334303705ad7766ea3e19971adc4008e", + "language": "Jupyter", + "lines": 236, + "truncated": false, + "block": 9, + "row": 2444 + } + ] +} \ No newline at end of file diff --git a/manifests/31/github.com__jorditi__neuromorphicpongcontrol.json b/manifests/31/github.com__jorditi__neuromorphicpongcontrol.json new file mode 100644 index 0000000000000000000000000000000000000000..2a7e3277dbae302e3ff8cab1b921d6b820d973f8 --- /dev/null +++ b/manifests/31/github.com__jorditi__neuromorphicpongcontrol.json @@ -0,0 +1,201 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/jorditi/neuromorphicpongcontrol", + "url": "https://github.com/JordiTi/NeuromorphicPongControl", + "host": "github.com", + "commit": "2fd61c8bc5286adf6d5fff491be3bc605652d835", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "87608a4197924bfc22b95ee9c98c9aafb73933256da3fd07809003a273fae591", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2757 + }, + { + "path": "NeuromorphicPongControl/Visualization/visualize_actuator.py", + "sha256": "fe69133a758615d72f67f2236e8d4b185865791e53e07c72e8c9935cc9a12ed2", + "language": "Python", + "lines": 274, + "truncated": false, + "block": 9, + "row": 10734 + }, + { + "path": "NeuromorphicPongControl/Visualization/visualize_game.py", + "sha256": "97d75a4f4226c411963647fed300918964914b28346714004072f5754a34cc32", + "language": "Python", + "lines": 277, + "truncated": false, + "block": 9, + "row": 10727 + }, + { + "path": "NeuromorphicPongControl/Visualization/visualize_gaussian_encoding.py", + "sha256": "d2db6d4a960298dcab054cb7d9b35ab41395111ec8af20173854efdd2b299858", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7518 + }, + { + "path": "NeuromorphicPongControl/plotting/PositionalcodingUncertaintyTool.py", + "sha256": "875cfa19dd13908d904c1294c79b14c9e2422cf47a29d51ec399e15dc345d01e", + "language": "Python", + "lines": 245, + "truncated": false, + "block": 9, + "row": 10752 + }, + { + "path": "NeuromorphicPongControl/plotting/boxplot.py", + "sha256": "5339e6334acd8a4eab28a9a20975e44ee205813182f424b6363d724bc7f9da65", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 7744 + }, + { + "path": "NeuromorphicPongControl/plotting/plotPerformanceHistogram.py", + "sha256": "5176bca266ebb85ca77103fd48587357e1d005a734ab6120a8295bf827147f76", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 7140 + }, + { + "path": "NeuromorphicPongControl/plotting/plotanglesweep.py", + "sha256": "e52e59a042b65a80e1e1bbc79af344a3c6729cf5bed52c5c8196cf9432da5ab6", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 8704 + }, + { + "path": "NeuromorphicPongControl/plotting/plotcombinationmatrix_circle.py", + "sha256": "2b04ffb7960bd7fc923e98dc8c3f5127ae828601bedec35c318bac3f46d70b2e", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 9, + "row": 9329 + }, + { + "path": "NeuromorphicPongControl/plotting/plothitrate.py", + "sha256": "9d0639c5f2ae995f5a3a87e7f0eeea09c23d50e2e182f2ab32f5df4d9ffadcce", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 9, + "row": 9644 + }, + { + "path": "NeuromorphicPongControl/plotting/plothitrate_SIF-DFA.py", + "sha256": "54f54f4cbf7c8b273de99b2cd533d3c22aeaca00b78955bf439bff51af85a99d", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 9025 + }, + { + "path": "NeuromorphicPongControl/plotting/plothitrate_SIF-EFA.py", + "sha256": "73f2f703af6442dd0f626612c62e48ddc76cdb74f25ef0dcf8a0873596b82f61", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 9673 + }, + { + "path": "NeuromorphicPongControl/plotting/plothitrate_SIF-LFA.py", + "sha256": "98b819d064e744652cbe588aaeceb0392e8b55a6fd0b223c6fb1c1e5d5748bb7", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 9026 + }, + { + "path": "NeuromorphicPongControl/plotting/plotnoiseanalysis.py", + "sha256": "6f4937fec1ce696644196346245ae41c40106378da4f57c72e30da62904e815a", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6920 + }, + { + "path": "NeuromorphicPongControl/plotting/surfaceplot.py", + "sha256": "001aeb24f794c6e588063cb3f0d9513b746b4a042416aba8a7d78887ff0a468c", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 7806 + }, + { + "path": "NeuromorphicPongControl/train/train.py", + "sha256": "3989ec5f5c231404c870205de0900dd16c380c1129f1b29e246e4905db055a43", + "language": "Python", + "lines": 246, + "truncated": false, + "block": 9, + "row": 10510 + }, + { + "path": "NeuromorphicPongControl/train/train_thresholdsweep.py", + "sha256": "f59bfad37808ee95ae1e7299eb5d10a469ac57d3182ad1bb3440bd9f76e75573", + "language": "Python", + "lines": 225, + "truncated": false, + "block": 9, + "row": 10399 + }, + { + "path": "NeuromorphicPongControl/utils/ContinuousEnvironment.py", + "sha256": "c1d619963c94ffe34f2bf93cd5a6033e0066840331803aa67a4b3f661dabd933", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 8423 + }, + { + "path": "NeuromorphicPongControl/utils/ContinuousObjects.py", + "sha256": "efedaddc0cde3b0db5031ea6efb6ddca73b672cae67a7503efbc80dcdd944693", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 9, + "row": 10269 + }, + { + "path": "NeuromorphicPongControl/utils/tools.py", + "sha256": "a96f3b3a4f884524962cc33e4475d607e3aa4b9439f400b9a31c99349601a229", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7126 + }, + { + "path": "README.md", + "sha256": "686b28d2c856e3bddb2a25d57fef058b98b5e5ae8aa2565eb11a24da56ee3a29", + "language": "Text", + "lines": 68, + "truncated": false, + "block": 9, + "row": 14589 + } + ] +} \ No newline at end of file diff --git a/manifests/32/github.com__xionglab__nt_heterogeneity.json b/manifests/32/github.com__xionglab__nt_heterogeneity.json new file mode 100644 index 0000000000000000000000000000000000000000..55ec129035a715ab40d7ef4a9ff134ee877ca7d1 --- /dev/null +++ b/manifests/32/github.com__xionglab__nt_heterogeneity.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/xionglab/nt_heterogeneity", + "url": "https://github.com/xionglab/NT_heterogeneity", + "host": "github.com", + "commit": "29286e8ea6689beb34dfe5b60d77a8dc9ce8f65d", + "license": "CC-BY-4.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "0b80cec623bb20a8acb1ee2c3014e308b2894a462c467c24c7a575cf8e894790", + "language": "License", + "lines": 399, + "truncated": false, + "block": 9, + "row": 2909 + }, + { + "path": "README.md", + "sha256": "4a19fcc5273117363627e922be43e5bcdc91a079f3c3778389f1f262b9b51310", + "language": "Text", + "lines": 5, + "truncated": false, + "block": 9, + "row": 14458 + } + ] +} \ No newline at end of file diff --git a/manifests/32/github.com__zjm199502__elife2026.json b/manifests/32/github.com__zjm199502__elife2026.json new file mode 100644 index 0000000000000000000000000000000000000000..a740a8fca1d2b5f596ccea49a07ecd60915caa1e --- /dev/null +++ b/manifests/32/github.com__zjm199502__elife2026.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/zjm199502/elife2026", + "url": "https://github.com/zjm199502/elife2026", + "host": "github.com", + "commit": "bd1432507ec955a590ee50ac216b87aa8ad64bf3", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "1dae8d254498c5eb194219f6a8f41f5ad0697c5050f5fdcd9540fac51949efe1", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2755 + }, + { + "path": "README.md", + "sha256": "0107506058518594bbad1c6ae4bdac1ea0704a2be817d799fc5ab5049ac9680e", + "language": "Text", + "lines": 2, + "truncated": false, + "block": 9, + "row": 14451 + } + ] +} \ No newline at end of file diff --git a/manifests/33/github.com__openfreeenergy__alchemiscale.json b/manifests/33/github.com__openfreeenergy__alchemiscale.json new file mode 100644 index 0000000000000000000000000000000000000000..6002d18d6c1c5b9724bb26f58d6b7d49b3b5939e --- /dev/null +++ b/manifests/33/github.com__openfreeenergy__alchemiscale.json @@ -0,0 +1,633 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/openfreeenergy/alchemiscale", + "url": "https://github.com/OpenFreeEnergy/alchemiscale/tree/v0.7.1", + "host": "github.com", + "commit": "ace1e3d290ab998751dfafc078980fa981a98e67", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "0398d558bec2ce647e0d9e76e69379cb48801f66a52842598682d86d4829edb4", + "language": "License", + "lines": 230, + "truncated": false, + "block": 9, + "row": 2906 + }, + { + "path": "README.md", + "sha256": "f8bd330bd8d8b8d93f66b3fac83c57e6336980d20a8123b6c9b9956735b6345d", + "language": "Text", + "lines": 18, + "truncated": false, + "block": 9, + "row": 14519 + }, + { + "path": "alchemiscale/__init__.py", + "sha256": "d8d43379653ac0a8bca73f2e100a756f56747db06ef6fa28953bffbe1c11e21c", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6408 + }, + { + "path": "alchemiscale/base/api.py", + "sha256": "35ee4a9ea76bace723db39e8b09329155993bbe8a13ad8fe0367595ee0828138", + "language": "Python", + "lines": 275, + "truncated": false, + "block": 9, + "row": 10592 + }, + { + "path": "alchemiscale/base/client.py", + "sha256": "90d426e6659ed00168447f8914b3c1d39c6530b3ef4127b7579cd17690f8bb43", + "language": "Python", + "lines": 685, + "truncated": false, + "block": 9, + "row": 12041 + }, + { + "path": "alchemiscale/cli.py", + "sha256": "2d39eafb21b000485b39e57f2c3fa8fbfdfb0ee164691317b1fa9b4b1cda94b2", + "language": "Python", + "lines": 684, + "truncated": false, + "block": 9, + "row": 11793 + }, + { + "path": "alchemiscale/cli_utils.py", + "sha256": "c85a3b1d5182cc0f39cae7ae53a487b59f81fc7d57236f50824879ac874c62bb", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 7029 + }, + { + "path": "alchemiscale/compression.py", + "sha256": "fcf365a19e7a731750fc208bc8fb7ad20546b57947e56025fce6f2f967df4b46", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 8474 + }, + { + "path": "alchemiscale/compute/__init__.py", + "sha256": "bf610ce1e69936385bc9f3ebfce8c486cb0d05f2c7fb5198a55866564e608c59", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6128 + }, + { + "path": "alchemiscale/compute/api.py", + "sha256": "84e8214192f5e687ab633cd799530c207d44de4dc2ee0ca4af0d7b29cb7c0d20", + "language": "Python", + "lines": 585, + "truncated": false, + "block": 9, + "row": 11756 + }, + { + "path": "alchemiscale/compute/client.py", + "sha256": "e525bde98cba0fe1fdb899b9ab22c2d8263619fe8602d9826be63bc148f9f159", + "language": "Python", + "lines": 246, + "truncated": false, + "block": 9, + "row": 10490 + }, + { + "path": "alchemiscale/compute/manager.py", + "sha256": "a0b385fd133758379d2ea01c064ddf3449efec6264b4b22381f339c4c0cd8626", + "language": "Python", + "lines": 306, + "truncated": false, + "block": 9, + "row": 11075 + }, + { + "path": "alchemiscale/compute/service.py", + "sha256": "9224bdd2ec93e77557da5dd6839e369bfc75f3bc9a1acd6ba57c8d3a58231203", + "language": "Python", + "lines": 453, + "truncated": false, + "block": 9, + "row": 11509 + }, + { + "path": "alchemiscale/compute/settings.py", + "sha256": "84dbb82b59f9a585578333868d91fec81e4fe06d70e3e289c329a8831d2c5a3d", + "language": "Python", + "lines": 212, + "truncated": false, + "block": 9, + "row": 10393 + }, + { + "path": "alchemiscale/compute/signals.py", + "sha256": "83a74ced1f51ac1e12f6cc4f821cec7cb73dea907c8b97d9f2d14248b34fa52b", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 9, + "row": 8410 + }, + { + "path": "alchemiscale/interface/__init__.py", + "sha256": "581dac922c644a06de6b06fd5c7e819f8cf0953346c6dc36e8651256536ca9d8", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6134 + }, + { + "path": "alchemiscale/interface/api.py", + "sha256": "68b23b5e8abaecf2965e57d442a72225fe1f28ae779908363a14745db68a9485", + "language": "Python", + "lines": 1323, + "truncated": false, + "block": 9, + "row": 12396 + }, + { + "path": "alchemiscale/interface/client.py", + "sha256": "da371ccf4f2172efd2ee98dc2618522c35a71f091460cefeb86a86a92560c2ae", + "language": "Python", + "lines": 2260, + "truncated": false, + "block": 9, + "row": 12612 + }, + { + "path": "alchemiscale/migrations/v03_to_v04.py", + "sha256": "888778ddbcbe0abdb3d2df4c352bb02974ff9552f2eb86637bacb34c5b49e689", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7141 + }, + { + "path": "alchemiscale/models.py", + "sha256": "5462349d65e79f08430a5daedab337fa2e7415498208819b063e754df8e7ccee", + "language": "Python", + "lines": 252, + "truncated": false, + "block": 9, + "row": 10337 + }, + { + "path": "alchemiscale/security/auth.py", + "sha256": "2a7035cf6728e6d1f1b209b352175eda3bd597097c7f8558e23a8c451f91e63f", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 9, + "row": 9162 + }, + { + "path": "alchemiscale/security/models.py", + "sha256": "6e2aafef54a47e90a8e38ed799a19c4ff26511c8ddf4b6f2f184e3ef6876bb38", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 7680 + }, + { + "path": "alchemiscale/settings.py", + "sha256": "c152b3abaf893c24c026e86c683d5e6922f9b6596489cb9a2d1c77fa16260b7f", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 9, + "row": 8428 + }, + { + "path": "alchemiscale/sleep.py", + "sha256": "cc0f4b7f5983cf7a8a63a7b8235cc2ab5c9534dd3f7d5c6de6e44a113913a003", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 7475 + }, + { + "path": "alchemiscale/storage/cypher.py", + "sha256": "c31d3d9d30f1718957175708a3fc5d963fe6e13bc38092739c9134248402a119", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 9276 + }, + { + "path": "alchemiscale/storage/models.py", + "sha256": "820fb7b62fc5a97a760d78ac8de255c4fbbe818f09ba1f9ec439a43b6f144c61", + "language": "Python", + "lines": 608, + "truncated": false, + "block": 9, + "row": 11543 + }, + { + "path": "alchemiscale/storage/objectstore.py", + "sha256": "bb43146c0418885caec70f9d8b1a377d69bc95a6da9b33448ec3d1392112224a", + "language": "Python", + "lines": 299, + "truncated": false, + "block": 9, + "row": 10702 + }, + { + "path": "alchemiscale/storage/statestore.py", + "sha256": "f5a630fb8034736bc02c7f3c1f54a3b42180ce2551346ccf349b0909949cf2f5", + "language": "Python", + "lines": 4344, + "truncated": false, + "block": 9, + "row": 12684 + }, + { + "path": "alchemiscale/storage/subgraph.py", + "sha256": "2b6b247b08c64d9be5e243726ca244fe8e361854f1717583e3e49af4ed560d03", + "language": "Python", + "lines": 157, + "truncated": false, + "block": 9, + "row": 9625 + }, + { + "path": "alchemiscale/strategist/__init__.py", + "sha256": "cafab7300073dde4ef2dd441e7f5105ef268322d0385081a2810ac091954ebf5", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 9, + "row": 6540 + }, + { + "path": "alchemiscale/strategist/service.py", + "sha256": "085330f741d221145e2b8972a2a2a8fffa022a00ad347676bbe1be0829f5d23e", + "language": "Python", + "lines": 719, + "truncated": false, + "block": 9, + "row": 12172 + }, + { + "path": "alchemiscale/strategist/settings.py", + "sha256": "6eb08d44c0b45496e000de1081143d18b3ba0325fce597951f0bfb3cf18b3070", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7737 + }, + { + "path": "alchemiscale/tests/integration/compute/client/conftest.py", + "sha256": "ef2fcf874c8d4aeb29f0e4d644d320d14c88e6365f34520a7cc132bb854b9bcc", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 8954 + }, + { + "path": "alchemiscale/tests/integration/compute/client/test_compute_client.py", + "sha256": "af4411b5dabe9fdda4b666ad98372e4499271deef8e6d8630fe5965a50fa7071", + "language": "Python", + "lines": 541, + "truncated": false, + "block": 9, + "row": 11708 + }, + { + "path": "alchemiscale/tests/integration/compute/client/test_compute_manager.py", + "sha256": "899c780dfd2b0a33d27dbf4c8586b6aae36753a3703f597bf79d234a171bc1e1", + "language": "Python", + "lines": 353, + "truncated": false, + "block": 9, + "row": 11121 + }, + { + "path": "alchemiscale/tests/integration/compute/client/test_compute_manager_client.py", + "sha256": "f76fcea0bdd41bf67671d7bfa63f98de49d6d3b8538b7ad80f22cf4d0788f8ad", + "language": "Python", + "lines": 241, + "truncated": false, + "block": 9, + "row": 10506 + }, + { + "path": "alchemiscale/tests/integration/compute/client/test_compute_service.py", + "sha256": "5d8f98af29622384c6543c517242e236a2b20a7652dec4d0097ad4513e59e120", + "language": "Python", + "lines": 418, + "truncated": false, + "block": 9, + "row": 11430 + }, + { + "path": "alchemiscale/tests/integration/compute/conftest.py", + "sha256": "f7d9c15fa8a7c2965269910304d18ad1472dbf090ee5342faf854b5ebb37e3af", + "language": "Python", + "lines": 196, + "truncated": false, + "block": 9, + "row": 9881 + }, + { + "path": "alchemiscale/tests/integration/compute/test_compute_api.py", + "sha256": "d5e0e252f7587e47b8f54585dff58e1c08b8c1a3b32e43773273ee46049db810", + "language": "Python", + "lines": 225, + "truncated": false, + "block": 9, + "row": 10437 + }, + { + "path": "alchemiscale/tests/integration/compute/utils.py", + "sha256": "b3fe6ce489d1b4019f4fda939dba07f6498605c963dd5fb91bcd386524496904", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6649 + }, + { + "path": "alchemiscale/tests/integration/conftest.py", + "sha256": "4661d7c78356df6d1c5100c61e4f67d7fc3a142909c52e6c9c0897519e9f8b60", + "language": "Python", + "lines": 614, + "truncated": false, + "block": 9, + "row": 11685 + }, + { + "path": "alchemiscale/tests/integration/interface/client/conftest.py", + "sha256": "c159cd2f1157a2e531df7c221e8d66fe13fcc8660de60764a0c73ab11a362f96", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 8523 + }, + { + "path": "alchemiscale/tests/integration/interface/client/test_client.py", + "sha256": "1ed18717fba2af9737daeb58d9bd8e3dd555d18846a946c5227a1ad23f467e3e", + "language": "Python", + "lines": 3005, + "truncated": false, + "block": 9, + "row": 12660 + }, + { + "path": "alchemiscale/tests/integration/interface/conftest.py", + "sha256": "9fa4302cafbc0649447814ffd615b03be139638810f0b706e31d6aee3e2ad0da", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 9, + "row": 8872 + }, + { + "path": "alchemiscale/tests/integration/interface/test_api.py", + "sha256": "745f15fa27aeace3f11ad81505d2b44b21a7666289b51adc10e3c032d8a53d93", + "language": "Python", + "lines": 312, + "truncated": false, + "block": 9, + "row": 10938 + }, + { + "path": "alchemiscale/tests/integration/interface/utils.py", + "sha256": "a9f47c84a12e3823b5aeeddbf7a3d6ab251bcb545c45f992c0bc02c1f3d167f1", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 9, + "row": 6575 + }, + { + "path": "alchemiscale/tests/integration/storage/test_objectstore.py", + "sha256": "8838b9f8842718e2f2b3c996a6674ab1d6a5063a9b85e37b882def19e4d52d7c", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 8240 + }, + { + "path": "alchemiscale/tests/integration/storage/test_statestore.py", + "sha256": "29eca1849650deee1ed60742b2b5f6b623c6c51858ea83997a4718e1a6836fa7", + "language": "Python", + "lines": 4093, + "truncated": false, + "block": 9, + "row": 12683 + }, + { + "path": "alchemiscale/tests/integration/storage/utils.py", + "sha256": "b85db64d8c7a9307d9a0297a2d82f02e96a52ef9386ada4a3aa0cba1c50b64aa", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 9, + "row": 8408 + }, + { + "path": "alchemiscale/tests/integration/strategist/test_strategist_service.py", + "sha256": "f49380a590cad531039068f7d87ba0bd1fabf4f9faab4295cc7258132efb1680", + "language": "Python", + "lines": 417, + "truncated": false, + "block": 9, + "row": 11507 + }, + { + "path": "alchemiscale/tests/integration/test_cli.py", + "sha256": "754345804e5721b44972b3b0fbf47e187dce73ce8912881fa197ee8666edd4bf", + "language": "Python", + "lines": 611, + "truncated": false, + "block": 9, + "row": 11604 + }, + { + "path": "alchemiscale/tests/integration/utils.py", + "sha256": "26aaf6bb98b2fedfc3289c476b905fc572de9631f57e0678c8f6033472d7f28f", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6928 + }, + { + "path": "alchemiscale/tests/unit/compute/test_manager.py", + "sha256": "635d9ca128f75cb7d4dee3d28a4273d337b115e5cdc554e63c9cee399e89dbb1", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 9, + "row": 9433 + }, + { + "path": "alchemiscale/tests/unit/compute/test_settings.py", + "sha256": "61c753167e9f4d6058f34677ed2eac5f0295af9f35924baf1e19e9ee44a0276f", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7353 + }, + { + "path": "alchemiscale/tests/unit/compute/test_signals.py", + "sha256": "08a3dd5fac7387470b2d0283853e4c4291ec4c4fc897b4dd7c01919094833d6a", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 9, + "row": 8341 + }, + { + "path": "alchemiscale/tests/unit/conftest.py", + "sha256": "28d2b27ebcfab9e1341b392c104ddf7a4dfabcc9b9d43b69c96df729de89c693", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 7855 + }, + { + "path": "alchemiscale/tests/unit/test_base_api.py", + "sha256": "8b52e989e91a0a95ee17d8ddb5c0da8b22edcaf535722e42c932ce904bf75950", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 8481 + }, + { + "path": "alchemiscale/tests/unit/test_client_params.py", + "sha256": "c425983b86eea395dc65de1f0977a76e247d69b2f7410b773288724d9bc546e8", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 9, + "row": 9895 + }, + { + "path": "alchemiscale/tests/unit/test_cypher.py", + "sha256": "b4de2dfe343fc427b2674e6b2673fde4f3ce3af6b444f1fe92dea3680ff7796b", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6811 + }, + { + "path": "alchemiscale/tests/unit/test_models.py", + "sha256": "5433897b17b7e2ebb0177d10e32e1c764ebd551a8a1fdca573dc67bdff555274", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9124 + }, + { + "path": "alchemiscale/tests/unit/test_security.py", + "sha256": "c3f6366ff6d3e1ce894da157ce7e7ef9d625d835d7f2db30a869f64dc0ec0b44", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7977 + }, + { + "path": "alchemiscale/tests/unit/test_statestore.py", + "sha256": "6b6d33c5b0d7b954ae31ee35343b43723d171047f227976d9e234ce296617d6c", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 9, + "row": 8898 + }, + { + "path": "alchemiscale/tests/unit/test_storage_models.py", + "sha256": "11fec47f55e43c205560c5d596517e64e69bee0c5c3c40200674daab6c8968f5", + "language": "Python", + "lines": 498, + "truncated": false, + "block": 9, + "row": 11715 + }, + { + "path": "alchemiscale/tests/unit/test_utils.py", + "sha256": "9a2e24afc4203f2dee12f805955087f9d20189da8eeabdd0f648910d30ccf818", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 8041 + }, + { + "path": "alchemiscale/tests/unit/test_validators.py", + "sha256": "9c43694c95d07e371cb1f35d9772643e5d25ac52bc4f8945da4092435eeec597", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 7803 + }, + { + "path": "alchemiscale/utils.py", + "sha256": "117fe877a2a6189b36f01c696e07e71ebdc5ab358ab2ab5539568b34cb0a4367", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 9, + "row": 8972 + }, + { + "path": "alchemiscale/validators.py", + "sha256": "0a85ddb9a2b697b940ecb8a52e20e475577e312f166f4813dbfd975c58a8f215", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6998 + }, + { + "path": "docs/conf.py", + "sha256": "6d080203e9cfd29acdb0e6e88150b05f709dedf9bacb743d710d99ea5ce15012", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 9, + "row": 8071 + }, + { + "path": "docs/tutorials/demo/Alchemiscale Demo.ipynb", + "sha256": "69c21bf9ecc5f522b15074537b2d28cc0ac57c3f20dace03cf9542166a931635", + "language": "Jupyter", + "lines": 663, + "truncated": false, + "block": 9, + "row": 2667 + } + ] +} \ No newline at end of file diff --git a/manifests/33/github.com__rrydbirk__msavspd.json b/manifests/33/github.com__rrydbirk__msavspd.json new file mode 100644 index 0000000000000000000000000000000000000000..b7c3cd1c3e80a08ad9652af0f024e3fc46f60b62 --- /dev/null +++ b/manifests/33/github.com__rrydbirk__msavspd.json @@ -0,0 +1,102 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/rrydbirk/msavspd", + "url": "https://www.github.com/rrydbirk/MSAvsPD/", + "host": "github.com", + "commit": "98354e9059384c466d84e52c58d71d158213c132", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "Liana.ipynb", + "sha256": "9a14af9a828c6b9e7810744ba8731bce10d37214b5c80b499083a76444db7caa", + "language": "Jupyter", + "lines": 285, + "truncated": false, + "block": 9, + "row": 2447 + }, + { + "path": "Manuscript_figures.Rmd", + "sha256": "2833b4482e61f6079e7e6997ae89578cf23b932a462e2652665a3388398507e9", + "language": "R", + "lines": 6077, + "truncated": false, + "block": 9, + "row": 13867 + }, + { + "path": "Objects_preparations.Rmd", + "sha256": "6caf48c3d3d168be976c2859334794f1908f7b50440388429c5cd379666586bb", + "language": "R", + "lines": 842, + "truncated": false, + "block": 9, + "row": 13793 + }, + { + "path": "Objects_preparations.ipynb", + "sha256": "e243d87e0e99e0c11529f3401758cd6cabeecebdd25ab3753d89087b93e2486b", + "language": "Jupyter", + "lines": 152, + "truncated": false, + "block": 9, + "row": 2287 + }, + { + "path": "README.md", + "sha256": "fc77231111b2f52dd7e72e5359b9d8842a9bf94a28916568798881c04498e8a7", + "language": "Text", + "lines": 102, + "truncated": false, + "block": 9, + "row": 14604 + }, + { + "path": "Scenic.ipynb", + "sha256": "8d3faa295aaee63be4c553b8fe79f61dcde1ed0fde8b52212111ac805b07d85d", + "language": "Jupyter", + "lines": 464, + "truncated": false, + "block": 9, + "row": 2585 + }, + { + "path": "scCODA.ipynb", + "sha256": "82500d0fc798d2fa3df23320a4e160ca472c185db14bbb529143e38d039cc99e", + "language": "Jupyter", + "lines": 1510, + "truncated": false, + "block": 9, + "row": 2706 + }, + { + "path": "scDRS_MSA.ipynb", + "sha256": "dfb6c533452de7f909cf3274562711792130d34a85a33c5ed7042de6486d0888", + "language": "Jupyter", + "lines": 116, + "truncated": false, + "block": 9, + "row": 2260 + }, + { + "path": "scDRS_PD.ipynb", + "sha256": "49631e9d4a94035e94f5c844109a5248740baee64a34a9e1ffe0e2d5c0631263", + "language": "Jupyter", + "lines": 230, + "truncated": false, + "block": 9, + "row": 2374 + } + ] +} \ No newline at end of file diff --git a/manifests/33/zenodo__17832222.json b/manifests/33/zenodo__17832222.json new file mode 100644 index 0000000000000000000000000000000000000000..f3a95bce924c78b203e8e8a3f84f5ea9ebea2940 --- /dev/null +++ b/manifests/33/zenodo__17832222.json @@ -0,0 +1,228 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:17832222", + "url": "https://doi.org/10.5281/zenodo.17832222", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "87608a4197924bfc22b95ee9c98c9aafb73933256da3fd07809003a273fae591", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2757 + }, + { + "path": "NeuromorphicPongControl/Visualization/actuator_fromraw.py", + "sha256": "86fbcdc590f6826c3963bf813f2d38e750a8ce4714da146409c6b0e47ffae8ca", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 8505 + }, + { + "path": "NeuromorphicPongControl/Visualization/visualize_actuator.py", + "sha256": "1cb183c139e649804b0b0b7f5968d0c50c9aaec64bbfbe62bb1080ca04a2fcab", + "language": "Python", + "lines": 284, + "truncated": false, + "block": 9, + "row": 10890 + }, + { + "path": "NeuromorphicPongControl/Visualization/visualize_game.py", + "sha256": "97d75a4f4226c411963647fed300918964914b28346714004072f5754a34cc32", + "language": "Python", + "lines": 277, + "truncated": false, + "block": 9, + "row": 10727 + }, + { + "path": "NeuromorphicPongControl/Visualization/visualize_gaussian_encoding.py", + "sha256": "d9a72ced5f6904d19e9ce2800acfeae10f838fc36545bb93d771ab36ed3b391b", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7558 + }, + { + "path": "NeuromorphicPongControl/plotting/PositionalcodingUncertaintyTool.py", + "sha256": "875cfa19dd13908d904c1294c79b14c9e2422cf47a29d51ec399e15dc345d01e", + "language": "Python", + "lines": 245, + "truncated": false, + "block": 9, + "row": 10752 + }, + { + "path": "NeuromorphicPongControl/plotting/boxplot.py", + "sha256": "5339e6334acd8a4eab28a9a20975e44ee205813182f424b6363d724bc7f9da65", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 7744 + }, + { + "path": "NeuromorphicPongControl/plotting/plotPerformanceHistogram.py", + "sha256": "5176bca266ebb85ca77103fd48587357e1d005a734ab6120a8295bf827147f76", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 7140 + }, + { + "path": "NeuromorphicPongControl/plotting/plotanglesweep.py", + "sha256": "e52e59a042b65a80e1e1bbc79af344a3c6729cf5bed52c5c8196cf9432da5ab6", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 8704 + }, + { + "path": "NeuromorphicPongControl/plotting/plotcombinationmatrix_circle.py", + "sha256": "2b04ffb7960bd7fc923e98dc8c3f5127ae828601bedec35c318bac3f46d70b2e", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 9, + "row": 9329 + }, + { + "path": "NeuromorphicPongControl/plotting/plothitrate.py", + "sha256": "9d0639c5f2ae995f5a3a87e7f0eeea09c23d50e2e182f2ab32f5df4d9ffadcce", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 9, + "row": 9644 + }, + { + "path": "NeuromorphicPongControl/plotting/plothitrate_SIF-DFA.py", + "sha256": "54f54f4cbf7c8b273de99b2cd533d3c22aeaca00b78955bf439bff51af85a99d", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 9025 + }, + { + "path": "NeuromorphicPongControl/plotting/plothitrate_SIF-EFA.py", + "sha256": "73f2f703af6442dd0f626612c62e48ddc76cdb74f25ef0dcf8a0873596b82f61", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 9673 + }, + { + "path": "NeuromorphicPongControl/plotting/plothitrate_SIF-LFA.py", + "sha256": "98b819d064e744652cbe588aaeceb0392e8b55a6fd0b223c6fb1c1e5d5748bb7", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 9026 + }, + { + "path": "NeuromorphicPongControl/plotting/plotnoiseanalysis.py", + "sha256": "6f4937fec1ce696644196346245ae41c40106378da4f57c72e30da62904e815a", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6920 + }, + { + "path": "NeuromorphicPongControl/plotting/surfaceplot.py", + "sha256": "001aeb24f794c6e588063cb3f0d9513b746b4a042416aba8a7d78887ff0a468c", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 7806 + }, + { + "path": "NeuromorphicPongControl/test/ContinuousObjects.py", + "sha256": "8c55244ce0a919bdfbf8b5d16887007d522ea7997d64500602c1ed20fe01527e", + "language": "Python", + "lines": 220, + "truncated": false, + "block": 9, + "row": 10497 + }, + { + "path": "NeuromorphicPongControl/test/noisetest.py", + "sha256": "f427f41846f130bb817e24ce558b396b886662cbe40556978c159e1be6facc0c", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 9, + "row": 10395 + }, + { + "path": "NeuromorphicPongControl/train/train.py", + "sha256": "3989ec5f5c231404c870205de0900dd16c380c1129f1b29e246e4905db055a43", + "language": "Python", + "lines": 246, + "truncated": false, + "block": 9, + "row": 10510 + }, + { + "path": "NeuromorphicPongControl/train/train_thresholdsweep.py", + "sha256": "f59bfad37808ee95ae1e7299eb5d10a469ac57d3182ad1bb3440bd9f76e75573", + "language": "Python", + "lines": 225, + "truncated": false, + "block": 9, + "row": 10399 + }, + { + "path": "NeuromorphicPongControl/utils/ContinuousEnvironment.py", + "sha256": "c1d619963c94ffe34f2bf93cd5a6033e0066840331803aa67a4b3f661dabd933", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 8423 + }, + { + "path": "NeuromorphicPongControl/utils/ContinuousObjects.py", + "sha256": "efedaddc0cde3b0db5031ea6efb6ddca73b672cae67a7503efbc80dcdd944693", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 9, + "row": 10269 + }, + { + "path": "NeuromorphicPongControl/utils/tools.py", + "sha256": "a96f3b3a4f884524962cc33e4475d607e3aa4b9439f400b9a31c99349601a229", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7126 + }, + { + "path": "README.md", + "sha256": "686b28d2c856e3bddb2a25d57fef058b98b5e5ae8aa2565eb11a24da56ee3a29", + "language": "Text", + "lines": 68, + "truncated": false, + "block": 9, + "row": 14589 + } + ] +} \ No newline at end of file diff --git a/manifests/34/github.com__carobellum__restmultitask.json b/manifests/34/github.com__carobellum__restmultitask.json new file mode 100644 index 0000000000000000000000000000000000000000..7a343660c3ba39577f9a28cb228edfe28976e26c --- /dev/null +++ b/manifests/34/github.com__carobellum__restmultitask.json @@ -0,0 +1,363 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/carobellum/restmultitask", + "url": "https://github.com/carobellum/RestMultitask.git", + "host": "github.com", + "commit": "2492fc3f78c7b3659e3eac9f475c22f90e16d1b7", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "2702174b885d72360d600e860163ce8ed7df0d93c147c4d8f636e6e0d34b50f4", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2833 + }, + { + "path": "README.md", + "sha256": "a819d0169e66155d48029338f86a27eadf1666527d9b79041a6399d018814d6a", + "language": "Text", + "lines": 193, + "truncated": false, + "block": 9, + "row": 14699 + }, + { + "path": "covariance.py", + "sha256": "1e6ff92843782daf0d8a59d9074a06f6eb4444c923ebbe764bd2e62397833060", + "language": "Python", + "lines": 730, + "truncated": false, + "block": 9, + "row": 12400 + }, + { + "path": "fit.py", + "sha256": "f3113a2d896a86fd510ede65045640a742b89bb274746c796a98ae8f3cd81865", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 9305 + }, + { + "path": "notebooks/connectivity_model.ipynb", + "sha256": "3db6cf142f60b1059aac7c0f2819ad080c915b5b6db90f631f552f1ad404ca53", + "language": "Jupyter", + "lines": 256, + "truncated": false, + "block": 9, + "row": 2467 + }, + { + "path": "notebooks/evaluate_similarity.ipynb", + "sha256": "f115a0df6f8dc1db4dcdfe9359c319baf8f6d879af47cee86e70d7feac8eed7b", + "language": "Jupyter", + "lines": 276, + "truncated": false, + "block": 9, + "row": 2446 + }, + { + "path": "notebooks/evaluate_similarity_corr.ipynb", + "sha256": "9598ab845e777bb8ed9d5479c1015ba5d7fc530dba898ed35ea8a31c0ce7b372", + "language": "Jupyter", + "lines": 194, + "truncated": false, + "block": 9, + "row": 2391 + }, + { + "path": "notebooks/evaluate_similarity_hcp.ipynb", + "sha256": "59ae150bcd3ed297579f5ec0f1dbc487eae18aa05d33d25fe05be7347128f2c5", + "language": "Jupyter", + "lines": 147, + "truncated": false, + "block": 9, + "row": 2383 + }, + { + "path": "notebooks/internal_validity.ipynb", + "sha256": "daa12588b74a399aa39396714d26fe1ea59cf25c3a1f5ec34b87bd72be43f8c5", + "language": "Jupyter", + "lines": 168, + "truncated": false, + "block": 9, + "row": 2397 + }, + { + "path": "notebooks/mds.ipynb", + "sha256": "dd9f5a193d32de85a977c2c255514394aaa2f3a83572a0d001ad4c9c5042863a", + "language": "Jupyter", + "lines": 511, + "truncated": false, + "block": 9, + "row": 2612 + }, + { + "path": "notebooks/overlap_mask.ipynb", + "sha256": "816ace3ce3933c09dcb4441d27e1acb89bf74b35b1b3e08ee69032d262541081", + "language": "Jupyter", + "lines": 136, + "truncated": false, + "block": 9, + "row": 2366 + }, + { + "path": "notebooks/parcellation.ipynb", + "sha256": "61fb01b1b96907036fee8aea47cf6e72a504e7c865b9e77e1ae563425147ee19", + "language": "Jupyter", + "lines": 234, + "truncated": false, + "block": 9, + "row": 2427 + }, + { + "path": "notebooks/reliability_covariance.ipynb", + "sha256": "2421ccbf058f3d93d5daaff6ad572c98046a9b9b34db2615dfafb72747b80d1c", + "language": "Jupyter", + "lines": 344, + "truncated": false, + "block": 9, + "row": 2581 + }, + { + "path": "notebooks/schematic_plot.ipynb", + "sha256": "da0bf752fc7fd67c7c74b37d92cbebccded34f4f52e5d611ca3c0145910ef286", + "language": "Jupyter", + "lines": 70, + "truncated": false, + "block": 9, + "row": 2228 + }, + { + "path": "notebooks/task_balancing.ipynb", + "sha256": "2a45eaa4a587983056030962a0b2921bac1b029255d9b81dfa0e36d01ac1d789", + "language": "Jupyter", + "lines": 104, + "truncated": false, + "block": 9, + "row": 2292 + }, + { + "path": "parcellation.py", + "sha256": "ac24296ffcb4a4afef783c8b3133f0cd4720c10fb89a93de34b412143321bb54", + "language": "Python", + "lines": 266, + "truncated": false, + "block": 9, + "row": 11483 + }, + { + "path": "parcellation_evaluation.py", + "sha256": "40cb9963e5711217f50bb45b26911458130c60820fc3228ba275c64a8b691954", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 9, + "row": 9818 + }, + { + "path": "paths.py", + "sha256": "adece5ce8dab80c85293f123d816b43e4b1c7db98b8928a70f94c027a7385887", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8506 + }, + { + "path": "plotting.py", + "sha256": "41583427f993028b2e7552b245133e0d528836986862bf4d37b9988744220d5c", + "language": "Python", + "lines": 388, + "truncated": false, + "block": 9, + "row": 11254 + }, + { + "path": "preprocessing/connectivity.py", + "sha256": "a4f06b025e085514316b17ccae43998bb9f2086029630485c6c8719471751860", + "language": "Python", + "lines": 370, + "truncated": false, + "block": 9, + "row": 11501 + }, + { + "path": "preprocessing/extract_hcp_resting.py", + "sha256": "9387091c7192f229bcabeb0cb9a14dae4448b50c1e38e7ef96d30bc908ae645c", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7514 + }, + { + "path": "preprocessing/extract_newff.py", + "sha256": "0234ef1257efebc102ceaed4f8e327d1ba4976b009c23277499c376974a96ee3", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8839 + }, + { + "path": "preprocessing/extract_replication_newff.py", + "sha256": "b0271155031348ee99660c132451b009e9d2434c643e5a65c5beed1ba96a185e", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7229 + }, + { + "path": "preprocessing/fix_language.py", + "sha256": "93202e2ed27009e50a7e53db43400130fa7c39ff0be0aac835d5c3b2452eb9a3", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 9, + "row": 10059 + }, + { + "path": "preprocessing/hcp_dataset_class.py", + "sha256": "b5d70fc229309dae800d243767c5b0a4327670f5b1ece6da48e57f625b2812f7", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8572 + }, + { + "path": "preprocessing/import_replication.py", + "sha256": "9e314435abafc551a8469c7822cd5dabbf98ef15c5ee4828f37227bb631c4f68", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 9763 + }, + { + "path": "preprocessing/mdtb_rerun_glm.py", + "sha256": "b88a531474c0378f0bf6abd4bc8505b21c6a28ba5d6c51c0b3dcf24e7e477a72", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 9, + "row": 9570 + }, + { + "path": "preprocessing/replication_preprocessing.m", + "sha256": "81083d6bd5528cd5ad0cce79a1bdbf825a533ffc131360ab51d5caa5e89b1b58", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 3026 + }, + { + "path": "scripts/correlate_covariance.py", + "sha256": "2519c3ae9bdcd147da38bf8487bc33edea37a77340d54317b64abe74e3f8c38e", + "language": "Python", + "lines": 274, + "truncated": false, + "block": 9, + "row": 10852 + }, + { + "path": "scripts/evaluate_similarity.py", + "sha256": "a9a3cd411c840d328fd05491ccf931f025f57af789cd098a58ca152f8f297b8e", + "language": "Python", + "lines": 304, + "truncated": false, + "block": 9, + "row": 11318 + }, + { + "path": "scripts/export_matrix.py", + "sha256": "d387570e68d95152c7c228076fb99351462e53698a4cc70272c76f0dfd64fe88", + "language": "Python", + "lines": 621, + "truncated": false, + "block": 9, + "row": 12195 + }, + { + "path": "scripts/internal_validity.py", + "sha256": "ba46364e435a7b998fe34d8d777ec723942690bcf73ab37449dc9fc12d0808ec", + "language": "Python", + "lines": 496, + "truncated": false, + "block": 9, + "row": 11949 + }, + { + "path": "scripts/internal_validity_masks.sh", + "sha256": "82ffd29ce8867f78023bb833b638c2b5e1dbe1e5a056506e8b2e93dfc476fa9c", + "language": "Shell", + "lines": 66, + "truncated": false, + "block": 9, + "row": 14290 + }, + { + "path": "scripts/mds.py", + "sha256": "95d0b291c75de0f31bc75d139af76bbae5a261249acf2348e8d66229dceee367", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8103 + }, + { + "path": "scripts/parcellate_cerebellum.py", + "sha256": "c23e7623d3dbfaf024c0a5e3efc6e7ebb7c368d16f39f6e2ab31d14f60d081c2", + "language": "Python", + "lines": 420, + "truncated": false, + "block": 9, + "row": 11674 + }, + { + "path": "scripts/parcellate_neocortex.py", + "sha256": "6e4b5b5226828a62acd790908c93eed3db2c20d80ffef8fd4001bdfb3b5b26b2", + "language": "Python", + "lines": 351, + "truncated": false, + "block": 9, + "row": 11465 + }, + { + "path": "scripts/reliability_covariance.py", + "sha256": "14ce212b5176e93f2857f53b62efa3b34e7cf39fbb55469fc50d0f3cebc0e437", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 9, + "row": 9645 + }, + { + "path": "scripts/train_eval_connectivity.py", + "sha256": "bcda3183959594bdc1f09bc317e4559eb201250233fee7574c5f91f6db669960", + "language": "Python", + "lines": 233, + "truncated": false, + "block": 9, + "row": 10951 + }, + { + "path": "simulation.py", + "sha256": "7e23e44e8a2b119261b09d5aba3a2163e5436c1edf7b6436a350c7c56bb7f24c", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 9, + "row": 9238 + } + ] +} \ No newline at end of file diff --git a/manifests/34/zenodo__18573618.json b/manifests/34/zenodo__18573618.json new file mode 100644 index 0000000000000000000000000000000000000000..5f0ad68e688b74c928d0e5105420a04aa363751a --- /dev/null +++ b/manifests/34/zenodo__18573618.json @@ -0,0 +1,111 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18573618", + "url": "10.5281/zenodo.18573618", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "4fda6b8f5e4d04d01ab75d112525bd01a21ef460d73df154f05c31f6874c92ba", + "language": "Text", + "lines": 19, + "truncated": false, + "block": 9, + "row": 14522 + }, + { + "path": "fig1-cheese3d-accuracy.ipynb", + "sha256": "e700709794a1839479d9268843c7cb8864ce2526bc34ee730d812e47760e051c", + "language": "Jupyter", + "lines": 291, + "truncated": false, + "block": 9, + "row": 2494 + }, + { + "path": "fig2-cheese3d-jitter-analysis.ipynb", + "sha256": "85bdca6ea66138495add91b04aa6a6b10b62035293d19d0683e4dcc9d28d0799", + "language": "Jupyter", + "lines": 1153, + "truncated": false, + "block": 9, + "row": 2723 + }, + { + "path": "fig3-part1-cheese3d-general-anesthesia-eeg.ipynb", + "sha256": "1abb8aaf6c7521b46b072e63cc61f6b707cece9face04c50584a254ab897eea7", + "language": "Jupyter", + "lines": 1578, + "truncated": false, + "block": 9, + "row": 2733 + }, + { + "path": "fig3-part3-cheese3d-redose-facial-features.ipynb", + "sha256": "ff85841ea482968279375f190b63dc8c1a26c4b286bc81129c631d7bf43bda94", + "language": "Jupyter", + "lines": 672, + "truncated": false, + "block": 9, + "row": 2690 + }, + { + "path": "fig5-part2-cheese3d-synchronized-electrophysiology.ipynb", + "sha256": "85fe6b60dedf69533b70fbec12c1074abfe36b2de3be1d3910194f945e822fb3", + "language": "Jupyter", + "lines": 1297, + "truncated": false, + "block": 9, + "row": 2732 + }, + { + "path": "fig5-part3-prediction-of-neural-activity-from-cheese3d.ipynb", + "sha256": "48cd43124c8ff702f8cf26c95e02f2f67e5b097d1c1476c14da6a1473b94e13c", + "language": "Jupyter", + "lines": 1844, + "truncated": false, + "block": 9, + "row": 2737 + }, + { + "path": "supfig2-cheese3d-vs-scan-structure.ipynb", + "sha256": "3ad7cb278c0025ff4cd33ec12f86f8df6059b7db4088d053c592c0ff856e27aa", + "language": "Jupyter", + "lines": 311, + "truncated": false, + "block": 9, + "row": 2531 + }, + { + "path": "supfig3-camera-number-comparison.ipynb", + "sha256": "db3d480afa43701c1ea49a2df4d4491f120a33e632ffcb616bf0a71c7550fe50", + "language": "Jupyter", + "lines": 521, + "truncated": false, + "block": 9, + "row": 2645 + }, + { + "path": "supfig5-cheese3d-jitter.ipynb", + "sha256": "98f4b028094bdd8d3b6b414b5708fb8aa4c9e42ffd915ca4513537ca01bc1bc8", + "language": "Jupyter", + "lines": 1038, + "truncated": false, + "block": 9, + "row": 2720 + }, + { + "path": "supfig6-cheese3d-vs-facemap-jitter.ipynb", + "sha256": "3c629cf0d601d2f2dd37ef0609dd60b73a2e8be6a4a1c09a8a6fb83b08004601", + "language": "Jupyter", + "lines": 639, + "truncated": false, + "block": 9, + "row": 2686 + } + ] +} \ No newline at end of file diff --git a/manifests/35/github.com__nely-epfl__antennal-grooming.json b/manifests/35/github.com__nely-epfl__antennal-grooming.json new file mode 100644 index 0000000000000000000000000000000000000000..6ed093c85218a53c82c7cc4fe89d1eee18c4c226 --- /dev/null +++ b/manifests/35/github.com__nely-epfl__antennal-grooming.json @@ -0,0 +1,300 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/nely-epfl/antennal-grooming", + "url": "https://github.com/NeLy-EPFL/antennal-grooming", + "host": "github.com", + "commit": "65787ac7fa35aa5520addb6d3e4ac27887bbaf60", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "cc128cae0b377a6f3dc8815363d9702b08677171fbe0614b0f7054221fc4d2e8", + "language": "License", + "lines": 201, + "truncated": false, + "block": 9, + "row": 2902 + }, + { + "path": "README.md", + "sha256": "72fbbc328ebecb4e88e40e8ca1d780432b3e8331b88ee7b427db1bb3b0c53048", + "language": "Text", + "lines": 116, + "truncated": false, + "block": 9, + "row": 14640 + }, + { + "path": "download_data.sh", + "sha256": "c626c05a8e608d79aeb975518ba0ad986ccff467352cfee73ac3c57bfeed4790", + "language": "Shell", + "lines": 26, + "truncated": false, + "block": 9, + "row": 14063 + }, + { + "path": "generate_figures.sh", + "sha256": "ebd5220eb39f6ee359d94c7fafffedb5c7448db5f33d92f77264a86b417a087c", + "language": "Shell", + "lines": 83, + "truncated": false, + "block": 9, + "row": 14273 + }, + { + "path": "src/EDFigure1.ipynb", + "sha256": "7a8a648bee5db08784081888a155e8ea771b258a4e757ea724eebadb1187ce30", + "language": "Jupyter", + "lines": 465, + "truncated": false, + "block": 9, + "row": 2524 + }, + { + "path": "src/EDFigure10.ipynb", + "sha256": "104a6de87d1a03bafca77b2af7d68efcab97148419a68d8208dbb85a7e6c5071", + "language": "Jupyter", + "lines": 247, + "truncated": false, + "block": 9, + "row": 2412 + }, + { + "path": "src/EDFigure11.ipynb", + "sha256": "b457453ac9cf259acc0a9cfb368b09c85ab48414f9b632fdc67c8752733a15c9", + "language": "Jupyter", + "lines": 691, + "truncated": false, + "block": 9, + "row": 2639 + }, + { + "path": "src/EDFigure13.ipynb", + "sha256": "764b92a0c962ec8927cf0893d82aa11279262d1e1e7d23ad1170b40677eca6d7", + "language": "Jupyter", + "lines": 259, + "truncated": false, + "block": 9, + "row": 2438 + }, + { + "path": "src/EDFigure2.ipynb", + "sha256": "2f0041ac270c89e9f40030d276088dea4a2c6aa83e5e01d7241086355dd8b6bc", + "language": "Jupyter", + "lines": 175, + "truncated": false, + "block": 9, + "row": 2330 + }, + { + "path": "src/EDFigure3.ipynb", + "sha256": "95545272793fc526f93e5a5cc6f9d42409d80ea3a486434f1eb8a09dddd7cb17", + "language": "Jupyter", + "lines": 102, + "truncated": false, + "block": 9, + "row": 2242 + }, + { + "path": "src/EDFigure4.ipynb", + "sha256": "c0202e0f089329c0e8747fa07590a1bf9d0ef7e6d2d79c959ac968f3edab5348", + "language": "Jupyter", + "lines": 467, + "truncated": false, + "block": 9, + "row": 2560 + }, + { + "path": "src/EDFigure6.ipynb", + "sha256": "b9277ef781dc9f7a6226f4cbf36aff27e82543bc7262b529c1e1f6b222895510", + "language": "Jupyter", + "lines": 108, + "truncated": false, + "block": 9, + "row": 2254 + }, + { + "path": "src/EDFigure7.ipynb", + "sha256": "03389b10ccfa1f957d4db83bb052046b590e48241dba02ab415f4a6d3007fcd0", + "language": "Jupyter", + "lines": 467, + "truncated": false, + "block": 9, + "row": 2562 + }, + { + "path": "src/EDFigure8.ipynb", + "sha256": "3f7e8afd8be915c562b890fea4f8f506f019446e06f01d15f08ef478e9d590a7", + "language": "Jupyter", + "lines": 133, + "truncated": false, + "block": 9, + "row": 2311 + }, + { + "path": "src/EDFigure9.ipynb", + "sha256": "f1190a99852a2ac549df72d690732ea2a14dadaa9b00b5c81758776ab06d5de7", + "language": "Jupyter", + "lines": 419, + "truncated": false, + "block": 9, + "row": 2512 + }, + { + "path": "src/Figure1.ipynb", + "sha256": "b6385e1778e756243b4aa203751c28987252d3e3672c8ddf47f63716ed5fbd88", + "language": "Jupyter", + "lines": 850, + "truncated": false, + "block": 9, + "row": 2662 + }, + { + "path": "src/Figure2.ipynb", + "sha256": "eab6d1ac345ba415dfc5f8071cc6cb8dbb1851ebb7ba5e6785bc95d56079a416", + "language": "Jupyter", + "lines": 802, + "truncated": false, + "block": 9, + "row": 2650 + }, + { + "path": "src/Figure3.ipynb", + "sha256": "6ee69da01a608b598be40e9b111643a042076a75b39140ab4dcd2ec5234ddd0d", + "language": "Jupyter", + "lines": 1529, + "truncated": false, + "block": 9, + "row": 2715 + }, + { + "path": "src/Figure4.ipynb", + "sha256": "133993624792b7c97debf1e71c6ba2eb69fdc8c561ca1f05277beddc3690a969", + "language": "Jupyter", + "lines": 736, + "truncated": false, + "block": 9, + "row": 2648 + }, + { + "path": "src/Figure5.ipynb", + "sha256": "d403cbaa7790d257c628b29b29116e9e44fba37b6b47bdab87e5b40c4e897733", + "language": "Jupyter", + "lines": 317, + "truncated": false, + "block": 9, + "row": 2461 + }, + { + "path": "src/Figure6.ipynb", + "sha256": "50163e72b196514457b4e6581c0851d4d98b15a4b7a5a81a1061376bfa984859", + "language": "Jupyter", + "lines": 908, + "truncated": false, + "block": 9, + "row": 2664 + }, + { + "path": "src/Figure7.ipynb", + "sha256": "c922a71626a64ae830a110d34ccc3a083326bb8a6a8454edd283f5d3962af3a0", + "language": "Jupyter", + "lines": 468, + "truncated": false, + "block": 9, + "row": 2598 + }, + { + "path": "src/common.py", + "sha256": "e33d07985db05a6cba38ecaa82d14c29f77f1de66581605921252b7023367aff", + "language": "Python", + "lines": 922, + "truncated": false, + "block": 9, + "row": 12140 + }, + { + "path": "src/prepare_data/EDFigure9_random_graphs.py", + "sha256": "ebf35fe7e8a7b4739b73ab1f4d19e23f93996421f526f95b9bc6b60f91f95eae", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 9, + "row": 9711 + }, + { + "path": "src/prepare_data/Figure1_prepare_data.py", + "sha256": "50f7e0f808bf92b7857dc9946cf4da70714a09fe9b606595036dacca1f4337f2", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 9, + "row": 9712 + }, + { + "path": "src/prepare_data/Figure3_prepare_data.py", + "sha256": "52c98e804a613479f84ce3529a689eba1b02d787f7897d0d0f569464da4738e0", + "language": "Python", + "lines": 1194, + "truncated": false, + "block": 9, + "row": 12416 + }, + { + "path": "src/prepare_data/Figure4_generate_grooming_network.py", + "sha256": "60f1d2f68d0ffa87d647d1d53874f1dcf2d6c70b867978357b1a955fda5434d9", + "language": "Python", + "lines": 402, + "truncated": false, + "block": 9, + "row": 11255 + }, + { + "path": "src/prepare_data/Figure4_graph_tools.py", + "sha256": "32a8664725267330595f77289777da77a1b3f9f08cbd8257c16cfbbab8d52b16", + "language": "Python", + "lines": 737, + "truncated": false, + "block": 9, + "row": 12125 + }, + { + "path": "src/prepare_data/Figure4_neurons.py", + "sha256": "bb90162e4144d4135da5384dac80e33711f1697fcd45efe78f777856a2663f76", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 7759 + }, + { + "path": "src/prepare_data/Figure5_prepare_data.py", + "sha256": "54c1a7310be6a8e67d224808e98fc66902e6580bd9596dcbd2d6cd7869dbf02c", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 9, + "row": 9349 + }, + { + "path": "src/prepare_data/Figure6_prepare_data.py", + "sha256": "b1c49e42f4fcbe76cabfac8068b9761b7612e7efaa53dae78d9c3ac1bedee363", + "language": "Python", + "lines": 195, + "truncated": false, + "block": 9, + "row": 9837 + }, + { + "path": "src/prepare_data/connectome_utils.py", + "sha256": "33c72749e9f30c803715dd64c7c67cbdd455a962e47f9af36566104d524f234d", + "language": "Python", + "lines": 813, + "truncated": false, + "block": 9, + "row": 12068 + } + ] +} \ No newline at end of file diff --git a/manifests/35/github.com__patwalters__rd_filters.json b/manifests/35/github.com__patwalters__rd_filters.json new file mode 100644 index 0000000000000000000000000000000000000000..f0ba697dbcd3a69ce622d509c4a40212a31f632b --- /dev/null +++ b/manifests/35/github.com__patwalters__rd_filters.json @@ -0,0 +1,66 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/patwalters/rd_filters", + "url": "https://github.com/PatWalters/rd_filters", + "host": "github.com", + "commit": "11a3b31f5b3669834bb916d8ed4422e69e455211", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "2007d43a9ee2091bbf79ac4f356cea359bfca19aaa2e2ef400b17ecc7198674b", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2815 + }, + { + "path": "README.md", + "sha256": "057d4fb0b2a65afeaad314c8d2a7d621a22cc2a64756eb6466d5986e25156cdf", + "language": "Text", + "lines": 169, + "truncated": false, + "block": 9, + "row": 14628 + }, + { + "path": "rd_filters.sh", + "sha256": "c90f4f8d8999b063676b9f6441b40e98843cc8baf5ca5c4311f3b1a1d749b14c", + "language": "Shell", + "lines": 6, + "truncated": false, + "block": 9, + "row": 13909 + }, + { + "path": "rd_filters/rd_filters.py", + "sha256": "49d7c7b07009111c1177840bbbdbc5026c30b931ec6d08a83f185565c001629d", + "language": "Python", + "lines": 216, + "truncated": false, + "block": 9, + "row": 10467 + }, + { + "path": "setup.py", + "sha256": "28a1893b303d5e5249a158c598cdc2606beeb6d84b5fd6cb016c5aab60d130dd", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6530 + }, + { + "path": "tests/test_rdfilter.py", + "sha256": "5bc5a91109bc1c5b6d771184cfabb158c15344429678005ebc9fe529d0a83eac", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 8176 + } + ] +} \ No newline at end of file diff --git a/manifests/35/zenodo__19383880.json b/manifests/35/zenodo__19383880.json new file mode 100644 index 0000000000000000000000000000000000000000..6394b3d4d99d6f5903b4be77a14dabe1f9754d8f --- /dev/null +++ b/manifests/35/zenodo__19383880.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19383880", + "url": "https://doi.org/10.5281/zenodo.19383880", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "run1_preprocessing.m", + "sha256": "0666484560e40a401f9a03008a58c6fdb1fb2942a3625b9e04596e4cdbe1f3c8", + "language": "MATLAB", + "lines": 118, + "truncated": false, + "block": 9, + "row": 5124 + }, + { + "path": "run2_postprocessing.m", + "sha256": "a16ea6fba6c8c419f8db78cc37d9c234819e43b4af4569f21143a847bba1d587", + "language": "MATLAB", + "lines": 159, + "truncated": false, + "block": 9, + "row": 5248 + }, + { + "path": "run3_aec_analysis.m", + "sha256": "b05ff88fa093e98ab314cd11036d34fe2a0566436b4ddb35b33b804627075540", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 9, + "row": 4978 + }, + { + "path": "run4_network_counts_plot.m", + "sha256": "ec0f1086995d9b70c6cff703f1d58f31a72dfd7729971a37fa297e6aa47d824d", + "language": "MATLAB", + "lines": 160, + "truncated": false, + "block": 9, + "row": 5085 + }, + { + "path": "run5_network_enrichment.m", + "sha256": "2ddd9755a3d6b0613704b798be8cf5f6d5019e6e1a146489f6f5ce415450a0d3", + "language": "MATLAB", + "lines": 162, + "truncated": false, + "block": 9, + "row": 5148 + } + ] +} \ No newline at end of file diff --git a/manifests/37/zenodo__17755165.json b/manifests/37/zenodo__17755165.json new file mode 100644 index 0000000000000000000000000000000000000000..4bd0cbe2fcf88a9ad2cdea0a24411ebb8f7a82f8 --- /dev/null +++ b/manifests/37/zenodo__17755165.json @@ -0,0 +1,381 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:17755165", + "url": "https://zenodo.org/records/17755165", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "1b622dc6ac17d1ea847d2d774cf756c11bd38f2956cacf6ddd4967c584403437", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2793 + }, + { + "path": "README.md", + "sha256": "6d0b6110bbe9d70083f656b0ebbf1ae38690a4e5ab1e14158ae81f1fb998e85e", + "language": "Text", + "lines": 10, + "truncated": false, + "block": 9, + "row": 14471 + }, + { + "path": "benchmarks/subsampled/gen_systems.py", + "sha256": "f2d6003eb4d335905bd6e46b5c46e525c037ccac148d6ff493dcb4ca1adb4ad2", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 8315 + }, + { + "path": "devtools/gen_serialized_results.py", + "sha256": "2141a8585f018ed939d9b0d084d0563cc5b2a9109acfac102e377883bcd119fc", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 9, + "row": 9933 + }, + { + "path": "docs/_ext/sass.py", + "sha256": "b8e7bd5d0c3846d44e105debadb689ec6311a74c12d16e9977fa816f0525b6c2", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8248 + }, + { + "path": "docs/conf.py", + "sha256": "c639a023e26c0322d6e1f3c8f2f0f75f6fe26a1fd1564cfeec7203031dd66d0d", + "language": "Python", + "lines": 179, + "truncated": false, + "block": 9, + "row": 9587 + }, + { + "path": "src/pontibus/__init__.py", + "sha256": "a6e10481710c7e589f59358eaef6dfa951c8e5c0a27889e227d4d22ada358d42", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6334 + }, + { + "path": "src/pontibus/components/__init__.py", + "sha256": "53aab7b78d36b2ecb2046cd8aa3a60fb08c93fc5810c43adb52e860ba8257e18", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6365 + }, + { + "path": "src/pontibus/components/extended_solvent_component.py", + "sha256": "85b9e8971a708b7ab2e704f5c4363de2b813954c11fbd7ee8bd565e5e61bdd13", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 9, + "row": 8658 + }, + { + "path": "src/pontibus/protocols/relative/__init__.py", + "sha256": "212c24968b84438866e8861202e763480ba11a6f0ed76ddc1bf9ab7f9878cb31", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6677 + }, + { + "path": "src/pontibus/protocols/relative/hybridtop_protocol.py", + "sha256": "d9c86c87916ed3e294e531c44540d7845a5c8600a995451f2dbafd8f97025f83", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 9710 + }, + { + "path": "src/pontibus/protocols/relative/hybridtop_units.py", + "sha256": "ac506d175049c9975de47a1c9b3c466d66b94228a4477b48e612d7b39a49697b", + "language": "Python", + "lines": 722, + "truncated": false, + "block": 9, + "row": 12186 + }, + { + "path": "src/pontibus/protocols/relative/settings.py", + "sha256": "5f5af57d1d800bc8bf33d297f214fd334777e7f151246f2eb71aa971d338e936", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7156 + }, + { + "path": "src/pontibus/protocols/solvation/__init__.py", + "sha256": "9cadc626adc4f153d61edde267257cb7e93b83d85af12f117d8c11716689b5d9", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6636 + }, + { + "path": "src/pontibus/protocols/solvation/asfe_protocol.py", + "sha256": "ef68dba2390a9c248e75f09b23819f25cf4f9105a72b05c8cdd4fbcfe9789cf2", + "language": "Python", + "lines": 451, + "truncated": false, + "block": 9, + "row": 11719 + }, + { + "path": "src/pontibus/protocols/solvation/base.py", + "sha256": "b9936ef898568aa85cc6e4bc325d2bd16c7ab0e93b0cf7067c5ff509cd061840", + "language": "Python", + "lines": 259, + "truncated": false, + "block": 9, + "row": 10671 + }, + { + "path": "src/pontibus/protocols/solvation/settings.py", + "sha256": "e1cb84682dea5d6bd9631ff74c5a301b1e074bc7241864d703552def33c7e52b", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7427 + }, + { + "path": "src/pontibus/tests/components/test_extendedsolvent.py", + "sha256": "a11d72ff25de1f35a1285ccc965b3fdecb663bde18011cf44a3e9725644d5194", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 9, + "row": 9430 + }, + { + "path": "src/pontibus/tests/conftest.py", + "sha256": "30f8776aba57a5c74ff836c069b6b9f3e4addedf7dd5b0e67edf9b02951c8ca5", + "language": "Python", + "lines": 373, + "truncated": false, + "block": 9, + "row": 11109 + }, + { + "path": "src/pontibus/tests/protocols/relative/conftest.py", + "sha256": "0008153b0bacd5a880f3396312180bbb960aa38c5e506fe95df82e987efaa50f", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7000 + }, + { + "path": "src/pontibus/tests/protocols/relative/test_protocol.py", + "sha256": "cc114adc6b3601d54666ee001c7c0cf48eeb7bf2982b643d5773e6feb18d4077", + "language": "Python", + "lines": 721, + "truncated": false, + "block": 9, + "row": 12178 + }, + { + "path": "src/pontibus/tests/protocols/relative/test_protocol_slow.py", + "sha256": "1a9c1c363dad210973cc836552f5cf50f67933809d68561409d25fb9517da76e", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8552 + }, + { + "path": "src/pontibus/tests/protocols/relative/test_results.py", + "sha256": "d322dee079df050bb28641e6095f34fce231222540c79f649f34cc7a5a65c7cd", + "language": "Python", + "lines": 173, + "truncated": false, + "block": 9, + "row": 9709 + }, + { + "path": "src/pontibus/tests/protocols/relative/test_tokenization.py", + "sha256": "78dcfb53bdfe6ba345decf79662b319dbeec45304356ffa6472d8a0eb9bcf8a5", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 9, + "row": 8728 + }, + { + "path": "src/pontibus/tests/protocols/solvation/conftest.py", + "sha256": "760025253223c898d088ae8c65a351dd761fe0675f4c71f8516758d5be2bc2e0", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7225 + }, + { + "path": "src/pontibus/tests/protocols/solvation/test_dry_run.py", + "sha256": "d86938dac144b0ba2bdb111a6f671a7c36f9d1fbb9f0db3fa5b7de62402883c1", + "language": "Python", + "lines": 331, + "truncated": false, + "block": 9, + "row": 10919 + }, + { + "path": "src/pontibus/tests/protocols/solvation/test_results.py", + "sha256": "39999afa55f637ffd1117a40e5ea2a3372a597d021bbb2e99b3945a552d6038d", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 9, + "row": 9975 + }, + { + "path": "src/pontibus/tests/protocols/solvation/test_tokenization.py", + "sha256": "15803d0a1212f3a365beab631e3a1d4e453b2f06d6c879ffc422dfd000cce4c7", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 9, + "row": 8742 + }, + { + "path": "src/pontibus/tests/protocols/solvation/test_validation.py", + "sha256": "76ab044661d8f12c10a977a08da555e2bda6825d12930580aacdca4a9e5f42a2", + "language": "Python", + "lines": 317, + "truncated": false, + "block": 9, + "row": 10904 + }, + { + "path": "src/pontibus/tests/utils/test_molecule_utils.py", + "sha256": "2b303c2ef40c04a169fb18d649c9cc1af4a793ca4de6c69dc9e4d01d9cc2f8df", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7460 + }, + { + "path": "src/pontibus/tests/utils/test_settings.py", + "sha256": "c3d86122abcb5d6a6d993a838e6428c4a1acc34a690554502cb3b825d67038a8", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 8997 + }, + { + "path": "src/pontibus/tests/utils/test_system_creation.py", + "sha256": "b3b782ebc59bfb67659e7959d3836f072141e347836a0111ebefc6a7cdea75cf", + "language": "Python", + "lines": 2169, + "truncated": false, + "block": 9, + "row": 12601 + }, + { + "path": "src/pontibus/tests/utils/test_system_manipulation.py", + "sha256": "1d2f7d6bb01cd661599ca1a6a8f85396d47c162c9813f035aa433cefc6c9c010", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 9, + "row": 9706 + }, + { + "path": "src/pontibus/utils/experimental_absolute_factory.py", + "sha256": "984c2f33e0f25992eb11c7e20d4e1c11e5409214af4faa30383c538f9078f425", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 9, + "row": 9901 + }, + { + "path": "src/pontibus/utils/molecule_utils.py", + "sha256": "6fb57b66417f689c5223c20b86c67721c0d13f4986734e730d3d8cc8739a4de9", + "language": "Python", + "lines": 252, + "truncated": false, + "block": 9, + "row": 10117 + }, + { + "path": "src/pontibus/utils/molecules.py", + "sha256": "f7df83adf41c3295a56d4cfe8d2961ca2722624f52eae2129c08a8afb6c07ed9", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 7845 + }, + { + "path": "src/pontibus/utils/protocol_utils.py", + "sha256": "2ae755e2c0bd595eb38d9b7b5f7638a4b7281f1a2dd926a6c651b9f62c2700e0", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 8269 + }, + { + "path": "src/pontibus/utils/settings.py", + "sha256": "9145a6fdd1b9392e26a86e507b3dbf28c3a83b07fb69a3d58877b7cc79d5db7f", + "language": "Python", + "lines": 226, + "truncated": false, + "block": 9, + "row": 10147 + }, + { + "path": "src/pontibus/utils/system_creation.py", + "sha256": "21938b3566b68aa3f4f2925e9f7f0a77a4425bdc13bae737696a3d1f6fb03182", + "language": "Python", + "lines": 583, + "truncated": false, + "block": 9, + "row": 11923 + }, + { + "path": "src/pontibus/utils/system_manipulation.py", + "sha256": "802cf901d5c14cd73b0a961f26a31ca8332c9b7e02f347af94368bfe70bb936a", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 9, + "row": 9702 + }, + { + "path": "src/pontibus/utils/system_solvation.py", + "sha256": "00691751a3a459efd003a480ea25be3302b275ee664a9ab2f5dc9a2e9ce27cd1", + "language": "Python", + "lines": 562, + "truncated": false, + "block": 9, + "row": 11820 + } + ] +} \ No newline at end of file diff --git a/manifests/3a/zenodo__15335138.json b/manifests/3a/zenodo__15335138.json new file mode 100644 index 0000000000000000000000000000000000000000..b6a29e012c341788199ff93d80f4f0a170f937f5 --- /dev/null +++ b/manifests/3a/zenodo__15335138.json @@ -0,0 +1,129 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:15335138", + "url": "https://zenodo.org/records/15335138", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Codes/Analysis/annotation_cell2location.ipynb", + "sha256": "ed956387e35d6e750974537d9bcb00501eefec5d966321ae8507a6314f98d9d5", + "language": "Jupyter", + "lines": 746, + "truncated": false, + "block": 9, + "row": 2674 + }, + { + "path": "Codes/Analysis/create_pseudobulk.ipynb", + "sha256": "a291d637bc1789c9498787a48d1e45cd750fd0ef4efb6b807b0889c3a3fea8c6", + "language": "Jupyter", + "lines": 199, + "truncated": false, + "block": 9, + "row": 2381 + }, + { + "path": "Codes/Analysis/preprocess_annotate_snrna.ipynb", + "sha256": "0cb2ddfd4e646a9dde9b08db66ef42c998826fc9c9ff772d376be994f25c82f3", + "language": "Jupyter", + "lines": 970, + "truncated": false, + "block": 9, + "row": 2695 + }, + { + "path": "Codes/Analysis/preprocess_scvi.ipynb", + "sha256": "bce61325522dfed66ff8c1d7ee2dea415808eef856fe68b2d422a37db6c52f7f", + "language": "Jupyter", + "lines": 384, + "truncated": false, + "block": 9, + "row": 2548 + }, + { + "path": "Codes/Analysis/pySCENIC_downstream.R", + "sha256": "13b588884112d8fb225ee31dc97f93aa3b43e8595a4809aebdc2edad23abc687", + "language": "R", + "lines": 407, + "truncated": false, + "block": 9, + "row": 13775 + }, + { + "path": "Codes/Analysis/snrna_MAST.R", + "sha256": "960b4042bed4567dd7fb9917df36c0267ccdfd97cef5ff9ddaccadb5d6e916d6", + "language": "R", + "lines": 1642, + "truncated": false, + "block": 9, + "row": 13862 + }, + { + "path": "Codes/Analysis/spatial_pseudobulk_deseq.R", + "sha256": "9d6e4ad1af9b88f6d05284460d8c8158efa05703db93c7ad5fabd4283890e958", + "language": "R", + "lines": 725, + "truncated": false, + "block": 9, + "row": 13821 + }, + { + "path": "Codes/Analysis/spatialclustering_squidpy.ipynb", + "sha256": "bf751e3c8fe0e9a7ba8bac2d24f234ee616b8bcaeff1f84b9013a030959cf917", + "language": "Jupyter", + "lines": 120, + "truncated": false, + "block": 9, + "row": 2333 + }, + { + "path": "Codes/Figure/Figure1.R", + "sha256": "13297e71a10ca09ac6edfc409849047fa4d083aad81c4b0a4c3bb2a557fc0314", + "language": "R", + "lines": 126, + "truncated": false, + "block": 9, + "row": 13286 + }, + { + "path": "Codes/Figure/Figure2.R", + "sha256": "32a991cc7b6829ef9746487e339b899d4b3ffd4a1c8d03f5c50f0b00a2f2c2c9", + "language": "R", + "lines": 470, + "truncated": false, + "block": 9, + "row": 13761 + }, + { + "path": "Codes/Figure/Figure4.R", + "sha256": "a89833f241d33b8e1ad8a42280a8db01626e809dbac4cc48023429c6babf7efb", + "language": "R", + "lines": 523, + "truncated": false, + "block": 9, + "row": 13812 + }, + { + "path": "Codes/Figure/Figure5.R", + "sha256": "76f1555a47434aa433b32dc2a47e9e72da486fc229707039baf8d54c205d608b", + "language": "R", + "lines": 548, + "truncated": false, + "block": 9, + "row": 13813 + }, + { + "path": "Codes/Figure/Figure6.R", + "sha256": "fba57337758c4a6ea43fc2001850456111d0b1939ae60b245287819c0fe2245e", + "language": "R", + "lines": 301, + "truncated": false, + "block": 9, + "row": 13673 + } + ] +} \ No newline at end of file diff --git a/manifests/3b/github.com__tommaso-ciceri__mri-based-spatio-temporal-atlas-of-ganglionic-eminence.json b/manifests/3b/github.com__tommaso-ciceri__mri-based-spatio-temporal-atlas-of-ganglionic-eminence.json new file mode 100644 index 0000000000000000000000000000000000000000..afb0b7614044cbb1d433416332fe257528822016 --- /dev/null +++ b/manifests/3b/github.com__tommaso-ciceri__mri-based-spatio-temporal-atlas-of-ganglionic-eminence.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/tommaso-ciceri/mri-based-spatio-temporal-atlas-of-ganglionic-eminence", + "url": "https://github.com/tommaso-ciceri/MRI-based-spatio-temporal-atlas-of-ganglionic-eminence", + "host": "github.com", + "commit": "f6c04efcf56d75b06ae89c049f342373a9fba25a", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4", + "language": "License", + "lines": 201, + "truncated": false, + "block": 1, + "row": 2216 + }, + { + "path": "README.md", + "sha256": "392232aa2a67570b5048c7f856ae7d5c3fd2659049bdd08b81e88133107d5b5f", + "language": "Text", + "lines": 31, + "truncated": false, + "block": 9, + "row": 14620 + } + ] +} \ No newline at end of file diff --git a/manifests/3b/zenodo__18765694.json b/manifests/3b/zenodo__18765694.json new file mode 100644 index 0000000000000000000000000000000000000000..b1dfa91c5183f0790cb0db3d7cde51ab13aa3c6b --- /dev/null +++ b/manifests/3b/zenodo__18765694.json @@ -0,0 +1,228 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18765694", + "url": "https://doi.org/10.5281/zenodo.18765694", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "data_provider/__init__.py", + "sha256": "01ba4719c80b6fe911b091a7c05124b64eeece964e09c058ef8f9805daca546b", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4956 + }, + { + "path": "data_provider/data_factory.py", + "sha256": "6858abccdc876838e75f915fa8e55e882eadf6590ef7b34c3d75603e4eec33a8", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 9, + "row": 8339 + }, + { + "path": "data_provider/data_loader.py", + "sha256": "a9b10ba542aea4796ab8fa0742c91da2e97e924edaf813d8b7a520c7d9564cb4", + "language": "Python", + "lines": 838, + "truncated": false, + "block": 9, + "row": 12341 + }, + { + "path": "layers/AutoCorrelation.py", + "sha256": "35fc23e552419a53ebf12de5eb39a276aeb379f3f49ad5cf85ad0527a8c18feb", + "language": "Python", + "lines": 163, + "truncated": false, + "block": 9, + "row": 9994 + }, + { + "path": "layers/Autoformer_EncDec.py", + "sha256": "48745b4bb647355e9845792a855df9c59fd7df7fcc664c765351fec390c4073e", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 9, + "row": 10094 + }, + { + "path": "layers/Conv_Blocks.py", + "sha256": "16d9f2d9e4fa094dc357901e32beecda9839709bcca02625e6447186933ce4e1", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 8143 + }, + { + "path": "layers/Embed.py", + "sha256": "17e7c3577324c41a0da427a199c955b782fde905aabb1f7cbc3c4e15ebd4ae35", + "language": "Python", + "lines": 190, + "truncated": false, + "block": 9, + "row": 10134 + }, + { + "path": "layers/FourierCorrelation.py", + "sha256": "ef3c6b6783644ec0d573be2836e70cb6077b47f349c8f3a30aea01f231df64d4", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 9, + "row": 10230 + }, + { + "path": "layers/MultiWaveletCorrelation.py", + "sha256": "cf0b8faf45a1b7fab4a3c1c521623c0762e2f9d7375b20ba9a9acd2142747342", + "language": "Python", + "lines": 587, + "truncated": false, + "block": 9, + "row": 11999 + }, + { + "path": "layers/SelfAttention_Family.py", + "sha256": "6f6592aed0753e342fc04c01db70528c2eb191eeb067cd5fd4c8d348fddcb794", + "language": "Python", + "lines": 302, + "truncated": false, + "block": 9, + "row": 11119 + }, + { + "path": "layers/StandardNorm.py", + "sha256": "3f690dc5fc0e395d4f1ffe6396717548d18bd04f4518258308bbe5f392703f5f", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 3, + "row": 20396 + }, + { + "path": "layers/Transformer_EncDec.py", + "sha256": "7b26f4459735c341f161011f6bc24b9deb8ecc3bcf61e4f15431998272a44fb4", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9435 + }, + { + "path": "layers/convffn.py", + "sha256": "45065b2e80d71d217758e14ce92a07c8a92f63368022eb2de1bb921d95671bbe", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7699 + }, + { + "path": "models/CCformer.py", + "sha256": "3a3d29bf3348f57e68c43548634b006e170fb95e92198728b25674b2dcb9dc36", + "language": "Python", + "lines": 252, + "truncated": false, + "block": 9, + "row": 11243 + }, + { + "path": "run.py", + "sha256": "55e3ec417d876049d39eda74e48108076ac145be2b2999834eeae53500e85b1e", + "language": "Python", + "lines": 227, + "truncated": false, + "block": 9, + "row": 11210 + }, + { + "path": "scripts/CCformer_M.sh", + "sha256": "1d711476633c18c80cb64fdb459b754df8f62eeb27d9c2105d2294658222c0d5", + "language": "Shell", + "lines": 276, + "truncated": false, + "block": 9, + "row": 14346 + }, + { + "path": "scripts/CCformer_S.sh", + "sha256": "1c57fadfb46c56980d919ecd8b259862183c8e5ac2cd7f5bb0ce9396f7b2dad7", + "language": "Shell", + "lines": 276, + "truncated": false, + "block": 9, + "row": 14345 + }, + { + "path": "utils/augmentation.py", + "sha256": "49783b81251b3ce758f1d25bd965b6d0edbaef34931215545f02cbfc747cef7e", + "language": "Python", + "lines": 468, + "truncated": false, + "block": 9, + "row": 11838 + }, + { + "path": "utils/losses.py", + "sha256": "d7f924f9abdf9dbbf097b60329a25ad727b163111014954ebf5856370a1aa116", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 9, + "row": 8793 + }, + { + "path": "utils/masking.py", + "sha256": "5976ac3dc84915d0d294c1761573bc18434751f29ec421bcca5a9b280de46bae", + "language": "Python", + "lines": 278, + "truncated": false, + "block": 9, + "row": 11027 + }, + { + "path": "utils/metrics.py", + "sha256": "0b2e2fafc740881234c6bf595d169b881091d5dd0ddf742cdf4ef34e68d3d01c", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7030 + }, + { + "path": "utils/print_args.py", + "sha256": "682cf349ae5937c5ba8f9d45c85779f7a35db1087754f18097a40957c8c97cee", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 8598 + }, + { + "path": "utils/timefeatures.py", + "sha256": "319b3da2ef15ccae95162b1b4f4a9a0b0da63fa0062a7f6006a06dd567258d85", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 3, + "row": 22493 + }, + { + "path": "utils/tools.py", + "sha256": "64048f154f899221d202ee740d06a32d30b5ba01425c9d69a3f20af8e43c15b8", + "language": "Python", + "lines": 182, + "truncated": false, + "block": 9, + "row": 9909 + } + ] +} \ No newline at end of file diff --git a/manifests/3d/github.com__herrlich10__mripy.json b/manifests/3d/github.com__herrlich10__mripy.json new file mode 100644 index 0000000000000000000000000000000000000000..5eae3ef451429e7e454ff94aa7744c07bedce2f1 --- /dev/null +++ b/manifests/3d/github.com__herrlich10__mripy.json @@ -0,0 +1,642 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/herrlich10/mripy", + "url": "https://github.com/herrlich10/mripy", + "host": "github.com", + "commit": "db1324a1a712c1948cc10ea3c629e74e7d2ea430", + "license": "MIT", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.txt", + "sha256": "178b17f8894dce6fec78ea8bf6ff88fb4f735cbf2e59bdc579e3c07b759815b0", + "language": "License", + "lines": 19, + "truncated": false, + "block": 9, + "row": 2754 + }, + { + "path": "README.rst", + "sha256": "00ec4701d6ce5e4cd2c591eb3ec4afcf1f672242d7264ef36c8eda94135f4206", + "language": "Text", + "lines": 64, + "truncated": false, + "block": 9, + "row": 14526 + }, + { + "path": "docs/source/conf.py", + "sha256": "8b6943c17145efd63888e01c05127c61b32bfc51a9f8aa1c27d7d4c142dffdbc", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 9, + "row": 8757 + }, + { + "path": "examples/demo.py", + "sha256": "4f7d64017689437e6d93f5724f3f797054f3935d98a13148025b616b8db8fb2c", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6085 + }, + { + "path": "management/release.py", + "sha256": "c029b2ec4652f7fecd0a04162dee2272e7d7741d1b8e9067758982a3e8ce94c9", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 8101 + }, + { + "path": "mripy/__init__.py", + "sha256": "200b6c8e2e1aba0406100bb0c3d233ef864a7ff6a6281750ef8d1792fe340394", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 9, + "row": 6501 + }, + { + "path": "mripy/_with_pylab.py", + "sha256": "a9c3105145cee88877e84a658f2b747d8be9f3537fd2333060f4ac9dc295c2d7", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6490 + }, + { + "path": "mripy/afni.py", + "sha256": "6c7029127f821c8ed6d1f8773d9590d0d393f922373230033d082c2c93a7f056", + "language": "Python", + "lines": 860, + "truncated": false, + "block": 9, + "row": 12242 + }, + { + "path": "mripy/data/__init__.py", + "sha256": "a7d3f620f6c3271d7d28623ae5d2e47dd5f78390540e3928c86cbe0e566308e6", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6483 + }, + { + "path": "mripy/dcm.py", + "sha256": "f17ab80bc77105ea9b4d981e195c5acdd0549dccb75c1aa18c6641f7bc14418f", + "language": "Python", + "lines": 333, + "truncated": false, + "block": 9, + "row": 11464 + }, + { + "path": "mripy/decoding.py", + "sha256": "b987d58f0f4279e7915284b692410d82d99a230c96bdb3a53730344619c3854e", + "language": "Python", + "lines": 330, + "truncated": false, + "block": 9, + "row": 11579 + }, + { + "path": "mripy/dependency.py", + "sha256": "c39dfa89506e8f8f8c286ac7ef25bbddf445e54b0026282211a212c543f7a503", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6741 + }, + { + "path": "mripy/dicom.py", + "sha256": "fbad243a877de33f5c7915d1c6f4467d4b52740bb823cd01ee821e092d2730ba", + "language": "Python", + "lines": 349, + "truncated": false, + "block": 9, + "row": 11732 + }, + { + "path": "mripy/dicom_report.py", + "sha256": "ec15580403a771948c76b9397da3af10058ccdfc961ba5b285b0055e858370f4", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 9, + "row": 9988 + }, + { + "path": "mripy/encoding.py", + "sha256": "da992b752fc5b7cd078a41044b0ca427e027804c80011b36ae1e2a4e842082a2", + "language": "Python", + "lines": 578, + "truncated": false, + "block": 9, + "row": 12200 + }, + { + "path": "mripy/evaluation.py", + "sha256": "d110ac05cc8ebfb8f19025895f4728d1159723a99afc8aa69b751e1c5ffcac0c", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 9017 + }, + { + "path": "mripy/headmotion.py", + "sha256": "55ed41a2712c3b622d6e8a8f805bc6dfa453f0d7d27e940cfcfbfd0938b9ff8d", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 9, + "row": 9304 + }, + { + "path": "mripy/io/__init__.py", + "sha256": "fe78afc0e59266896fcaed1f0075435d2357246473d554e48b59e40cb0e45a23", + "language": "Python", + "lines": 1696, + "truncated": false, + "block": 9, + "row": 12578 + }, + { + "path": "mripy/io/freesurfer.py", + "sha256": "9aea77bc5347a3bfe530b862200eac85ced2cb205d1c28c7bcb4108d9fc818b8", + "language": "Python", + "lines": 242, + "truncated": false, + "block": 9, + "row": 10676 + }, + { + "path": "mripy/io/gifti.py", + "sha256": "f3af1b6882f1306d5dde4a231ec88cc8105936198ad7dfd985588397450a3d04", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 9, + "row": 6945 + }, + { + "path": "mripy/io/niml.py", + "sha256": "d2ccb72520958fabaddc07068f9e79c3329ba99654394174575b68044121d1ec", + "language": "Python", + "lines": 247, + "truncated": false, + "block": 9, + "row": 10926 + }, + { + "path": "mripy/math.py", + "sha256": "a50818e7d8dff0f91276789760353fda574304e4fcc3d6fcc8b2e6c70dd9b2e1", + "language": "Python", + "lines": 273, + "truncated": false, + "block": 9, + "row": 10728 + }, + { + "path": "mripy/matlab/inpolyhedron.m", + "sha256": "427632819d0ca9987a862c3ccd54286b66b11c09b11df95bd9afc5a502997acd", + "language": "MATLAB", + "lines": 461, + "truncated": false, + "block": 9, + "row": 5831 + }, + { + "path": "mripy/matlab/mripy_align_asc.m", + "sha256": "f54d4455875afd324fc0a3978b4077cfacfef2766944bde6a1d4de05b0ea61ff", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 9, + "row": 3529 + }, + { + "path": "mripy/matlab/mripy_average_asc.m", + "sha256": "afb98024b23e344eb3fe13f11d1848ff2e2c388d70dabac4c9931dbe11051d65", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 9, + "row": 3267 + }, + { + "path": "mripy/matlab/mripy_create_hpf_X0.m", + "sha256": "955daa6be7fe409e46747d471135840eba5e1cc4aa4586d06275b2c88ffdded3", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3810 + }, + { + "path": "mripy/matlab/mripy_dataset2json.m", + "sha256": "d0da39ab9bdf5c32edd8546f92aed26c1c055424761b2a031610c4017b3e1415", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3208 + }, + { + "path": "mripy/matlab/mripy_diagnose_DCM.m", + "sha256": "b4a630a580500a58ca3d238ea0c581b435dea40488ed11edd0a847cc9be9c2d4", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3600 + }, + { + "path": "mripy/matlab/mripy_est_from_GCM.m", + "sha256": "26e936d2e46dfb91cf922212225c661ec1a62d55594a90a68312637cf1bb5e15", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 4112 + }, + { + "path": "mripy/matlab/mripy_est_from_PEB.m", + "sha256": "bf548106c09842d9f1c2327c6dbeac1a97edbc46fc1554a8c403b6d4151bc4f9", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3657 + }, + { + "path": "mripy/matlab/mripy_est_from_PEB_BMA.m", + "sha256": "06fbdcfb93b1cab6d632bfaf4835dd1e7c5e9ff666dd58a781ef9fd64321a80b", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 9, + "row": 3941 + }, + { + "path": "mripy/matlab/mripy_infer_suma_subject.m", + "sha256": "c91a86401212361357a95552ed27adfbb0d99ef34e9145b12ec105a46b8780b5", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 2992 + }, + { + "path": "mripy/matlab/mripy_merge_asc.m", + "sha256": "f614545bda35a41e9be764e4f5e739f6db1a318011830233bfb13fea60892609", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3751 + }, + { + "path": "mripy/matlab/mripy_normalize_weight.m", + "sha256": "11b0f0897d70a065326897b48af955ac0cdde4ecc38a63e8f0f37eb741829752", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 9, + "row": 3253 + }, + { + "path": "mripy/matlab/mripy_plot_DCM.m", + "sha256": "4dba336792020e8df70c4beee53b0cffb8643fe71c6f14ce949ca739d727aae3", + "language": "MATLAB", + "lines": 436, + "truncated": false, + "block": 9, + "row": 5742 + }, + { + "path": "mripy/matlab/mripy_range.m", + "sha256": "5e56cb1304b4d6a0f0fe5e358e4ae0413c26a280c42ce6da01c4dbe937831ec2", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 2977 + }, + { + "path": "mripy/matlab/mripy_read_asc.m", + "sha256": "835687467fc8d426bfe9bbd5e3ef2e1697cc475d3c6e7e4f7c8c15c23fce98c1", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3179 + }, + { + "path": "mripy/matlab/mripy_read_transform.m", + "sha256": "d239372985056df4a31a55be811e00e160a3aae289f87e735de3123573b7ce08", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 9, + "row": 3115 + }, + { + "path": "mripy/matlab/mripy_trim_init_resp.m", + "sha256": "298c1d496ff2642282a1246b1de1d527a10ff513a156de9ae9591eaef3012a12", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3141 + }, + { + "path": "mripy/matlab/mripy_write_asc.m", + "sha256": "6dab396d95e09fcf69f6d4631466d219c42de2b3390297e75a72f522817c2065", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3367 + }, + { + "path": "mripy/matlab/mripy_write_geometry.m", + "sha256": "d1c517e1c7ba11bac489c3c0142328e6d62ff7fa1b46fe3cba4812f93d1e12e4", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3306 + }, + { + "path": "mripy/paraproc.py", + "sha256": "3c16a128c511bdfed595b2a17eb207618a4509758c2472d65bbdde1474af88be", + "language": "Python", + "lines": 621, + "truncated": false, + "block": 9, + "row": 12220 + }, + { + "path": "mripy/preprocess.py", + "sha256": "a2afbe7217842104b9d80fb0e9c6fe634b0b8f987e3b727a10036a58c0b6d081", + "language": "Python", + "lines": 2488, + "truncated": false, + "block": 9, + "row": 12667 + }, + { + "path": "mripy/scripts/__init__.py", + "sha256": "fa3236ecabe84379c8893bac240a9ff4729b00bdac51b0016c10c4cdfa837479", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 7473 + }, + { + "path": "mripy/scripts/afni_viewer.py", + "sha256": "bf8336d1b977fdd1e0a092e4252d29c0d1b31c1fd0b67d2af11f3f4b7fd36270", + "language": "Python", + "lines": 219, + "truncated": false, + "block": 9, + "row": 10948 + }, + { + "path": "mripy/scripts/extract_physio.py", + "sha256": "2f06e54b1f8c75772f586ae3a4fc9c2410267571083ac2a28252dd71cd4f0a07", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 10323 + }, + { + "path": "mripy/scripts/mripy_1dplot.py", + "sha256": "8b3a30a7576de92a60cc63a0d5885d378bb8c744effcb37739aa1ad39b7dd6e1", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7570 + }, + { + "path": "mripy/scripts/mripy_run_iglesias18.py", + "sha256": "24014d25a472a157e5dd0812e3d5e1a0f2092aa64af1b164a451c7697c8486df", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 9050 + }, + { + "path": "mripy/scripts/mripy_run_wang15.py", + "sha256": "b9885dcdb7943604093773047745c1e6de85b074efd7cb3497e4b71eb378a535", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 9, + "row": 8966 + }, + { + "path": "mripy/scripts/report_parameters.py", + "sha256": "41130ffb320399639a7fa3340a9e2049e682b5eb05a5241474b7ae5c4fa1b5e4", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 7337 + }, + { + "path": "mripy/scripts/script_utils.py", + "sha256": "a705d386434a2176a8dd58c9a850f0c653601d06d89945e88da4621f8b36afce", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7404 + }, + { + "path": "mripy/scripts/sort_dicom.py", + "sha256": "5cf3eba8f81a01775c8e2d7f20eed4cddc6cdbffe7bf2c1f88ddb7ce0bca808b", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 9, + "row": 9755 + }, + { + "path": "mripy/six.py", + "sha256": "71ceb0abfa2e5ec46915271705e0580ddb4d8fc45ea3a8539348b9050aea7502", + "language": "Python", + "lines": 886, + "truncated": false, + "block": 9, + "row": 12236 + }, + { + "path": "mripy/slicetiming.py", + "sha256": "224cf2b66616404c18f6742efb11f0df854651d524f94ebd226d9fe2c725cbf9", + "language": "Python", + "lines": 214, + "truncated": false, + "block": 9, + "row": 10165 + }, + { + "path": "mripy/stats.py", + "sha256": "1bbabc0534ac38b8da6484231946b9ad194eb7a62f62a335181ba1cb48c4ceb7", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 9, + "row": 10041 + }, + { + "path": "mripy/surface/__init__.py", + "sha256": "12176b029ae2697e7a85c21cad5e6fdfb278dbb8af9f4669b9bbb65a46e85b66", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6375 + }, + { + "path": "mripy/surface/smooth.py", + "sha256": "64b72108a74218f6cfd72194ef5be52eb8329f9419da84ea7905ef3ea70d690e", + "language": "Python", + "lines": 230, + "truncated": false, + "block": 9, + "row": 10850 + }, + { + "path": "mripy/surface/surface.py", + "sha256": "75330da700c899ff34e9fb83d097399c2f8028cfbef88aea0b9d3232986ca872", + "language": "Python", + "lines": 838, + "truncated": false, + "block": 9, + "row": 12359 + }, + { + "path": "mripy/tests/__init__.py", + "sha256": "3d081258e096e178c08282d96cd017b97eaadd1b07c1308d0625c6b925473b49", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6341 + }, + { + "path": "mripy/tests/context.py", + "sha256": "d39ffdd59c84a0ad6a0e22736eabe797e83d7c7dcee6f7002465bcd162e67d9f", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 9, + "row": 6640 + }, + { + "path": "mripy/tests/test_afni.py", + "sha256": "70589544d4427c6498d55f7e8eacbf8ddd31ef57666d1b6fa2bc9cfd0711b438", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 8534 + }, + { + "path": "mripy/tests/test_extract_physio.sh", + "sha256": "a9e5df1dacb621da6c48775b23814c49f7a60ca338b25214bbeff2de62db4a56", + "language": "Shell", + "lines": 19, + "truncated": false, + "block": 9, + "row": 14074 + }, + { + "path": "mripy/tests/test_io.py", + "sha256": "73b8b9c786f2756d53cea06acd62bbf8527f903be2f7cad699d250d9a16bc70b", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7702 + }, + { + "path": "mripy/tests/test_timecourse.py", + "sha256": "7b718f289605a97066becac877f10e47a603f289908a258c370d457921dd0250", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 8265 + }, + { + "path": "mripy/tests/test_utils.py", + "sha256": "2ee64ba55bfa4e4161adda9d450b3bcd6db3546e998022efbce15e852fd95179", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6893 + }, + { + "path": "mripy/tests/test_utils_slow.py", + "sha256": "12181da4fd8973fb524dcad40bbbdc93b0ec11d01ba41e13e74d6ae1f25e9fe2", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8267 + }, + { + "path": "mripy/timecourse.py", + "sha256": "88075a7d3d24ad7e108c58429f1dd946bc7e7a019932da4f181cb6bb849777b2", + "language": "Python", + "lines": 1018, + "truncated": false, + "block": 9, + "row": 12457 + }, + { + "path": "mripy/utils.py", + "sha256": "b2ba5e7db4a66902137dc84c2ce6f742abdfa40d40b7a0fefd4d01c3eaa0bb61", + "language": "Python", + "lines": 507, + "truncated": false, + "block": 9, + "row": 11744 + }, + { + "path": "mripy/vis.py", + "sha256": "e068c35ada5a8d52176472f9ddc865ea15fec41ac62f96a2e4b8eb172d8128bb", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 8862 + }, + { + "path": "setup.py", + "sha256": "a1b62c9eb945a77e1b9b6f2b4fc5dc768fc170f001f326e999bd521841b563d5", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7165 + } + ] +} \ No newline at end of file diff --git a/manifests/3e/github.com__biosignalslibphys__seege_.json b/manifests/3e/github.com__biosignalslibphys__seege_.json new file mode 100644 index 0000000000000000000000000000000000000000..f646e5ad65bf2d9c65f8bd11e787bdbef49051ad --- /dev/null +++ b/manifests/3e/github.com__biosignalslibphys__seege_.json @@ -0,0 +1,201 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/biosignalslibphys/seege_", + "url": "https://github.com/BiosignalsLibphys/seege_", + "host": "github.com", + "commit": "cb009112058a01e45a8aaf2ab4d0313611bdd82c", + "license": "LGPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "e3a994d82e644b03a792a930f574002658412f62407f5fee083f2555c5f23118", + "language": "License", + "lines": 165, + "truncated": false, + "block": 3, + "row": 8137 + }, + { + "path": "README.md", + "sha256": "af6c4c2aa0efe990a623d64dce93c0c42329dddbfe535b960fcba62ec2f01545", + "language": "Text", + "lines": 67, + "truncated": false, + "block": 9, + "row": 14554 + }, + { + "path": "diversity_metrics_tutorial.ipynb", + "sha256": "3afa88dd9f5153ebc064dcb70e34ba23c78c9c880dd1695069a17e5a527a9b85", + "language": "Jupyter", + "lines": 498, + "truncated": false, + "block": 9, + "row": 2577 + }, + { + "path": "main.py", + "sha256": "9512d9370ddf8cc0e90db6478a39f603206c0e2a8063ff3361b9abc5cdc61fe4", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 9, + "row": 9928 + }, + { + "path": "setup.py", + "sha256": "ca90fa21e119ae669f7dbceb5955268fe665b4e12bf6ebb4f546e9575bfd6a13", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6505 + }, + { + "path": "src/complexity_fidelity.py", + "sha256": "6e3fb92879b55e01d9b67b761bf54e9283a4e143d7b9cf6aafd5e0bd50d09142", + "language": "Python", + "lines": 1139, + "truncated": false, + "block": 9, + "row": 12441 + }, + { + "path": "src/diversity.py", + "sha256": "f357a7185ede553c6c5f0e5a6ae493faf627e8c5170367ed06261694aa7a80fe", + "language": "Python", + "lines": 495, + "truncated": false, + "block": 9, + "row": 11888 + }, + { + "path": "src/evaluation_score.py", + "sha256": "75153269c2a2521d1e4d5e9d4660dbd28cf500e178368670064780a6b99e6c8a", + "language": "Python", + "lines": 911, + "truncated": false, + "block": 9, + "row": 12207 + }, + { + "path": "src/frequency_fidelity.py", + "sha256": "ecb445d4566a0be78a802aa5cd27395baa74d45212e9de48dcf27127fd9f4502", + "language": "Python", + "lines": 861, + "truncated": false, + "block": 9, + "row": 12353 + }, + { + "path": "src/preprocessing.py", + "sha256": "ac5c1ec2076b7bc4da1316bfa6ca1fb96358df1344558875b10db8f6eab82456", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7746 + }, + { + "path": "src/privacy.py", + "sha256": "a08fe92c6161694cf0276f88e858bdf06ff329617add2e966f3280e234fe366a", + "language": "Python", + "lines": 458, + "truncated": false, + "block": 9, + "row": 11705 + }, + { + "path": "src/spatial_fidelity.py", + "sha256": "204a67d4c6fc793808cfb13cf4beb0ff104a0e1c7b138323bbf54e89f20c84a1", + "language": "Python", + "lines": 218, + "truncated": false, + "block": 9, + "row": 10585 + }, + { + "path": "src/time_fidelity.py", + "sha256": "1164d2265eaa935b05df962a985950d32646a9287e8fea4af31763edb3752eac", + "language": "Python", + "lines": 234, + "truncated": false, + "block": 9, + "row": 10787 + }, + { + "path": "src/time_frequency_fidelity.py", + "sha256": "c4847b2fa60b666029486446c3bfc0d310dea4cf9543fdd1f38d8b81a6325468", + "language": "Python", + "lines": 961, + "truncated": false, + "block": 9, + "row": 12448 + }, + { + "path": "src/validation/complexity_validation.py", + "sha256": "9d59100ac81656a33a5c2565fa6aef597e5cacc5ecec7c8cb671bf554c8747f4", + "language": "Python", + "lines": 322, + "truncated": false, + "block": 9, + "row": 11398 + }, + { + "path": "src/validation/diversity_validation.py", + "sha256": "f66bc7307f9aeb6142925dc59ba725e3e0a0f527224f93a461dee605d7151597", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 9, + "row": 10383 + }, + { + "path": "src/validation/frequency_validation.py", + "sha256": "c244b6356183d9cd2a499ce00cd0aca8c371bf6a9fcc48e79506fd8faf2567a6", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 9, + "row": 10100 + }, + { + "path": "src/validation/privacy_validation.py", + "sha256": "f75c791f66cb9e5d12ac4232234330d8d29a32a4689d1089c0ad3cf0f3cf7c33", + "language": "Python", + "lines": 283, + "truncated": false, + "block": 9, + "row": 11060 + }, + { + "path": "src/validation/time_frequency_validation.py", + "sha256": "777370fd8831e57d7fcd832cf8d4838198472ca034f9e06cce560d2dc732856e", + "language": "Python", + "lines": 351, + "truncated": false, + "block": 9, + "row": 11280 + }, + { + "path": "src/validation/time_validation.py", + "sha256": "b1dc99e303e8d64faa60b4ef332d97063bf18cdfad646880995326b00a737e86", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 9, + "row": 9027 + }, + { + "path": "usage_tutorial.ipynb", + "sha256": "b7d674cd7d75207afae6a4af8c673c47bf65c2cdad472d64039e7a0cb20c2611", + "language": "Jupyter", + "lines": 213, + "truncated": false, + "block": 9, + "row": 2379 + } + ] +} \ No newline at end of file diff --git a/manifests/3e/github.com__google__ffn.json b/manifests/3e/github.com__google__ffn.json new file mode 100644 index 0000000000000000000000000000000000000000..d5fa301e89ec4c54643378009a0cae9692df932c --- /dev/null +++ b/manifests/3e/github.com__google__ffn.json @@ -0,0 +1,615 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/google/ffn", + "url": "https://github.com/google/ffn", + "host": "github.com", + "commit": "b8df2d96d7c8da057fd2702ced19732a08ab6ae4", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "cfc7749b96f63bd31c3c42b5c471bf756814053e847c10f3eb003417bc523d30", + "language": "License", + "lines": 202, + "truncated": false, + "block": 1, + "row": 2217 + }, + { + "path": "README.md", + "sha256": "f0b0405f313f81bbb7c48e76eaeacdf4fc74743cecf9d8970adc91d6e4521ec8", + "language": "Text", + "lines": 142, + "truncated": false, + "block": 9, + "row": 14651 + }, + { + "path": "build_coordinates.py", + "sha256": "7d627ca096db60dee62f240740e69221360ba45d486666ccc741d2d834e947ec", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 9147 + }, + { + "path": "compute_partitions.py", + "sha256": "766f931267d6b88c1490cb4a50518aefd750c394525c20de654f202f11c808fc", + "language": "Python", + "lines": 262, + "truncated": false, + "block": 9, + "row": 10666 + }, + { + "path": "ffn/__init__.py", + "sha256": "f4cd2a8e399313b47f1c7b1392c252d2619aa702de560a1f10b6f45a057b3516", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6798 + }, + { + "path": "ffn/inference/__init__.py", + "sha256": "f4cd2a8e399313b47f1c7b1392c252d2619aa702de560a1f10b6f45a057b3516", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6798 + }, + { + "path": "ffn/inference/align.py", + "sha256": "f6ef93510239423d967eeba0330196169acb710d1adcaaed4d7ac9e6be8e45e6", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 9, + "row": 9822 + }, + { + "path": "ffn/inference/consensus.py", + "sha256": "7a10ddd6681b6dc3e2dc6ca40393cfeb20c1fda2560356cb783e5048b0d330d7", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8678 + }, + { + "path": "ffn/inference/consensus_pb2.py", + "sha256": "aacfbeefe40689e38db8694d64c13fe9e377c662097779bd6a1708509bc2b574", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 9, + "row": 10050 + }, + { + "path": "ffn/inference/errors.py", + "sha256": "b843eb68b4814e9fb9539d6473ae1f1ebf955bf6e66c24e35b6f03fd10206337", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6946 + }, + { + "path": "ffn/inference/executor.py", + "sha256": "c4faa73e76dfe2c1b12ecad88d1999eaafb859a1ebfa60b11c74883bd93f4a33", + "language": "Python", + "lines": 404, + "truncated": false, + "block": 9, + "row": 11293 + }, + { + "path": "ffn/inference/inference.py", + "sha256": "605ebad1a8fd53fc5be3c9bd69eef88fd7fd090fcd572fc481d11ec01c3cbd65", + "language": "Python", + "lines": 843, + "truncated": false, + "block": 9, + "row": 12226 + }, + { + "path": "ffn/inference/inference_flags.py", + "sha256": "9ffce75e118999b7014b53005858788b3d018b265316901e7607ee3221c177b0", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7432 + }, + { + "path": "ffn/inference/inference_pb2.py", + "sha256": "8e40cd55296761eef6367cfbb22d8bce3b180b143d8ea477923a2063cea0cf87", + "language": "Python", + "lines": 1186, + "truncated": false, + "block": 9, + "row": 12498 + }, + { + "path": "ffn/inference/inference_utils.py", + "sha256": "f4aad2d3bf9d6351e45d81bdaf4088d7085852729636961e0527348a7d58b596", + "language": "Python", + "lines": 253, + "truncated": false, + "block": 9, + "row": 10135 + }, + { + "path": "ffn/inference/movement.py", + "sha256": "0b8ab053757cd6c893b5d7daa38b9068ba2619e9b3f6d549d1ac4cddae73cc93", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 9, + "row": 10637 + }, + { + "path": "ffn/inference/resegmentation.py", + "sha256": "cc5a34dd81278da52d4d592afd6b1e9ece068b2d411d99afe8a5ce1357884b41", + "language": "Python", + "lines": 301, + "truncated": false, + "block": 9, + "row": 10843 + }, + { + "path": "ffn/inference/resegmentation_analysis.py", + "sha256": "fe8852c4ecb369b4cedccde3b3cd4c8c1436d971e483bb916da73e0527f023a0", + "language": "Python", + "lines": 260, + "truncated": false, + "block": 9, + "row": 10682 + }, + { + "path": "ffn/inference/resegmentation_pb2.py", + "sha256": "dd69a5acb42db5ddbfda244f86ef2b6be5a4f897eee9686fc1b3f5274289b9ed", + "language": "Python", + "lines": 469, + "truncated": false, + "block": 9, + "row": 11935 + }, + { + "path": "ffn/inference/runner.py", + "sha256": "7e428b59f7ab776d8002e626d6ca60dea9b02ad85d0fbe61d780b04beea93754", + "language": "Python", + "lines": 544, + "truncated": false, + "block": 9, + "row": 11731 + }, + { + "path": "ffn/inference/seed.py", + "sha256": "b7e31883b1ee32ea5baf16fc3c2025dc678610d57f496bf817e1f7541bd5ba44", + "language": "Python", + "lines": 544, + "truncated": false, + "block": 9, + "row": 11695 + }, + { + "path": "ffn/inference/segmentation.py", + "sha256": "1cb49f669ccef1ccb7a045be9cd22f10c848e0886d4a4ac3cf4955042f3eff32", + "language": "Python", + "lines": 290, + "truncated": false, + "block": 9, + "row": 10873 + }, + { + "path": "ffn/inference/storage.py", + "sha256": "6806ecfb944a832079e4025262d4d88239221c077210191bb48f6e41cb5da337", + "language": "Python", + "lines": 511, + "truncated": false, + "block": 9, + "row": 11630 + }, + { + "path": "ffn/input/load_data_test.py", + "sha256": "a0105fe1c429a9cf28da1e77b63a5e075d1f09c293002563da243bafa6ba6795", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6856 + }, + { + "path": "ffn/input/segmentation.py", + "sha256": "03bb88ebfa5e387e07772450f737b583578637fdaa7fe4641d684e4165d7fb26", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 8297 + }, + { + "path": "ffn/input/volume.py", + "sha256": "eeddfa425e581beeb87632fbe19d04b274539fbb4ca96878901f69a693b67099", + "language": "Python", + "lines": 411, + "truncated": false, + "block": 9, + "row": 11246 + }, + { + "path": "ffn/input/volume_test.py", + "sha256": "a0105fe1c429a9cf28da1e77b63a5e075d1f09c293002563da243bafa6ba6795", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6856 + }, + { + "path": "ffn/jax/accelerator_utils.py", + "sha256": "40975d425c21af0bb1252433bba7ffb30a5de1ff6252323ea73c38b0611712ea", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 7774 + }, + { + "path": "ffn/jax/input_pipeline.py", + "sha256": "f64ec03bc55d6e955424ae90566ee3552babda44bb02de41f714473ef5c455eb", + "language": "Python", + "lines": 489, + "truncated": false, + "block": 9, + "row": 11578 + }, + { + "path": "ffn/jax/main.py", + "sha256": "3a3cffbf229b1e8423176fbc69316c12d6603db23181c9fc5d9bcfa0d4367d1e", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7320 + }, + { + "path": "ffn/jax/tracker.py", + "sha256": "79b1e4279b2f60b057093e4ec308cfebb1a2da885f4a9a36a9258e46aa4ff779", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 7554 + }, + { + "path": "ffn/jax/train.py", + "sha256": "f8b0a6357817eef47f47bf5d10326ba45a22b97703ceee707b2607fbe37e0e62", + "language": "Python", + "lines": 764, + "truncated": false, + "block": 9, + "row": 12083 + }, + { + "path": "ffn/secgan/__init__.py", + "sha256": "1ecbf8befb36287ce840ddb4987354bb28beeccf031663f1ce76d53d9396f9bd", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6790 + }, + { + "path": "ffn/secgan/main.py", + "sha256": "475319fc19172012777765abb5da06691cb321dd93c1bb76bd0d31f87f7f8e99", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7517 + }, + { + "path": "ffn/secgan/models.py", + "sha256": "c94912a4f89527fb0c5d41a17367c8cd677216e370557a503b74ecb015e5f12a", + "language": "Python", + "lines": 435, + "truncated": false, + "block": 9, + "row": 11007 + }, + { + "path": "ffn/secgan/models_test.py", + "sha256": "2f78ca00371432d157e86e416094eb36842c92623e1b5b6f28a054a67a4ee834", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8488 + }, + { + "path": "ffn/secgan/train.py", + "sha256": "78257e620acfbb5756e463649ca46099b07673525708a96c0344b86759ee5e3b", + "language": "Python", + "lines": 1629, + "truncated": false, + "block": 9, + "row": 12539 + }, + { + "path": "ffn/secgan/train_test.py", + "sha256": "1ecbf8befb36287ce840ddb4987354bb28beeccf031663f1ce76d53d9396f9bd", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6790 + }, + { + "path": "ffn/training/__init__.py", + "sha256": "f4cd2a8e399313b47f1c7b1392c252d2619aa702de560a1f10b6f45a057b3516", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6798 + }, + { + "path": "ffn/training/augmentation.py", + "sha256": "30aad4dda2b6afe6221169b3e4b40bf957c8cf22beb89acf63e141e6ff085ae8", + "language": "Python", + "lines": 1154, + "truncated": false, + "block": 9, + "row": 12407 + }, + { + "path": "ffn/training/examples.py", + "sha256": "78d7a00a73abf9daa173b19b4a1d2d6e8a110c27e9a760e91fdf086d7d25fdb1", + "language": "Python", + "lines": 397, + "truncated": false, + "block": 9, + "row": 11477 + }, + { + "path": "ffn/training/import_util.py", + "sha256": "0e0fd36c65e7d76d04acb19b4bdae78daa437210a19213b6305864da3c83d989", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 7019 + }, + { + "path": "ffn/training/inputs.py", + "sha256": "b0e4a2470d6c11e5fdfb83c5b18f2cd9d1c92d0a234b8f6442dc30f84f79ec2e", + "language": "Python", + "lines": 879, + "truncated": false, + "block": 9, + "row": 12221 + }, + { + "path": "ffn/training/inputs_test.py", + "sha256": "cad2a3faf630bb131942facffb57bde7bb6cc45695493b715f34b09ae12ef6b3", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 8597 + }, + { + "path": "ffn/training/mask.py", + "sha256": "7579859d3c8850ce9950bb73ca913696a18048116b766322ae3472483d0d2896", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 9, + "row": 9808 + }, + { + "path": "ffn/training/model.py", + "sha256": "6fd64c40aa62b59ad5e3236b0cc51167a282659fea5015ee6f75597cca662c7f", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 9, + "row": 10035 + }, + { + "path": "ffn/training/models/__init__.py", + "sha256": "f4cd2a8e399313b47f1c7b1392c252d2619aa702de560a1f10b6f45a057b3516", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6798 + }, + { + "path": "ffn/training/models/convstack_3d.py", + "sha256": "b72c0e534d212738fcfd439ef92cb60e72599cd4851e9c43b52233ff7a5b6b27", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 9, + "row": 8625 + }, + { + "path": "ffn/training/optimizer.py", + "sha256": "af152fad0978dc3107e2bd1926808702a0fdad58449b0ee7725a6bc086b8483b", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 9, + "row": 9077 + }, + { + "path": "ffn/training/tracker.py", + "sha256": "3b646358c6517dea0e855ff00d326c12bb9dfdef062417ba7ab6ea56ea17b1ef", + "language": "Python", + "lines": 440, + "truncated": false, + "block": 9, + "row": 11294 + }, + { + "path": "ffn/training/tracker_test.py", + "sha256": "c4231681bd5b401bd6226caa60f24ba2387b1ed6a3457761222f702e17ac0e85", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 8437 + }, + { + "path": "ffn/training/variables.py", + "sha256": "786b1296d6473a06103d9df274753deb2802ba73e8cb94e6f4dbd139dcfe2a8e", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 9, + "row": 9083 + }, + { + "path": "ffn/utils/__init__.py", + "sha256": "f4cd2a8e399313b47f1c7b1392c252d2619aa702de560a1f10b6f45a057b3516", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6798 + }, + { + "path": "ffn/utils/bounding_box.py", + "sha256": "81cbdf3cd2db7826f12b99e2f1f2693eca7b4f85a87c16027f654ef3dad1fa4e", + "language": "Python", + "lines": 412, + "truncated": false, + "block": 9, + "row": 11435 + }, + { + "path": "ffn/utils/bounding_box_pb2.py", + "sha256": "7e1d8181d906ba506ba5742bee024c3252c8230acdc489f4e0609f9f9096d64a", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 9, + "row": 9556 + }, + { + "path": "ffn/utils/decision_point.py", + "sha256": "4f183f213eeae32532c6ff5ada5d9a042c5d322a548dc965c564e21e2d09a2dd", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 9464 + }, + { + "path": "ffn/utils/geom_utils.py", + "sha256": "37ab4737f3547c6e4329665f6ce12e3f0e93d07362538c9da530d2bc8edf606e", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8310 + }, + { + "path": "ffn/utils/ortho_plane_visualization.py", + "sha256": "e3a5a7f9872926df6eaa401af8e847f13b6b19fd2268c4333f200e03d7f61d1b", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 9, + "row": 9277 + }, + { + "path": "ffn/utils/png_to_h5.py", + "sha256": "706ef130564e66dd8a60bf612bd2def2b97fdc7fb3d13185751346d2f2e43c6b", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7155 + }, + { + "path": "ffn/utils/proofreading.py", + "sha256": "e9718205cfef8c315d2f621e162c84485f146017535805341e6202e96cac869d", + "language": "Python", + "lines": 584, + "truncated": false, + "block": 9, + "row": 11749 + }, + { + "path": "ffn/utils/tests/decision_point_test.py", + "sha256": "1662909d0d4fc95453a28ad577a22f06c1a7b57abb89e8da74355ae8e0afd853", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 9, + "row": 8684 + }, + { + "path": "ffn/utils/vector_pb2.py", + "sha256": "55b3cf5e388825fb04d1cc6f6637743581225cb95a039e256a3184d4eac43a1f", + "language": "Python", + "lines": 495, + "truncated": false, + "block": 9, + "row": 11513 + }, + { + "path": "notebooks/ffn_inference_colab_demo.ipynb", + "sha256": "3b2e277d9a5dc7e8b82f44ca1f0b191b27228de55ad21a375ef6751df13452a7", + "language": "Jupyter", + "lines": 83, + "truncated": false, + "block": 9, + "row": 2234 + }, + { + "path": "notebooks/jax_ffn_inference_liconn.ipynb", + "sha256": "bcfae1523e1d196a2eea28fb4958a605cff64927c20e14d940b061e930758af4", + "language": "Jupyter", + "lines": 109, + "truncated": false, + "block": 9, + "row": 2299 + }, + { + "path": "run_inference.py", + "sha256": "1ea728a53962dd717bcab900b69cd156a7895224f26cb39feca0cad813f34bcd", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 7796 + }, + { + "path": "setup.py", + "sha256": "9dbad0c767ce07a0ae878f425c3f36befdd42b328ed3320879304588150b7b83", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 7830 + }, + { + "path": "train.py", + "sha256": "61aaffe1ae502babc123116a30ab3c7050620ad0c1de16e2c72fa8d5fe2a0a83", + "language": "Python", + "lines": 451, + "truncated": false, + "block": 9, + "row": 11663 + } + ] +} \ No newline at end of file diff --git a/manifests/3e/github.com__welton0411__matlab_sms_recon.json b/manifests/3e/github.com__welton0411__matlab_sms_recon.json new file mode 100644 index 0000000000000000000000000000000000000000..925365c3ee28d9947b6310ecd7d0813fc83b6033 --- /dev/null +++ b/manifests/3e/github.com__welton0411__matlab_sms_recon.json @@ -0,0 +1,336 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/welton0411/matlab_sms_recon", + "url": "https://github.com/welton0411/matlab_sms_recon", + "host": "github.com", + "commit": "29af03114c6b85202e8a109e7107663ab2a89d3d", + "license": "MIT", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.txt", + "sha256": "f84904d4a55bc2dc17756c877424f0e127106c4223cd0dae9de5edd7827d7291", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2859 + }, + { + "path": "README.md", + "sha256": "95e0d08d13232692e5d1f9f679e0c79a968a51ff2b1ed75680dd6a9bc054aac2", + "language": "Text", + "lines": 1, + "truncated": false, + "block": 9, + "row": 14457 + }, + { + "path": "convertVE_s2025010601_run1.m", + "sha256": "d65216c9ba73df935617ce52876e933002771e7e4197e8928a2891d43e396b20", + "language": "MATLAB", + "lines": 189, + "truncated": false, + "block": 9, + "row": 5451 + }, + { + "path": "pproc2_s2025010601_run1_dn2.m", + "sha256": "5d73761e75c598ac980be68b625a404f3a75767c003f5763375c388b5cef70fd", + "language": "MATLAB", + "lines": 1399, + "truncated": false, + "block": 9, + "row": 5990 + }, + { + "path": "recon_s2025010601_run1_dn2.m", + "sha256": "55c5643116c9ee3a6cc9c17c47af88040ad2b9979dfad3643ec8cc855e7fa445", + "language": "MATLAB", + "lines": 1237, + "truncated": false, + "block": 9, + "row": 6008 + }, + { + "path": "welton_toolbox_github/NIFTI_NORDIC_wt.m", + "sha256": "f2c31f919004e22730260f38b789dfa98fabf6e724ac177c6d538d2816117128", + "language": "MATLAB", + "lines": 1148, + "truncated": false, + "block": 9, + "row": 5922 + }, + { + "path": "welton_toolbox_github/NORDIC_wt.m", + "sha256": "f1ff16c473cb83fc924a8830cb808e82052cc8e7a45c24f240acacb7dded1041", + "language": "MATLAB", + "lines": 1220, + "truncated": false, + "block": 9, + "row": 5949 + }, + { + "path": "welton_toolbox_github/NORDIC_wt_ker11.m", + "sha256": "09c8234fea05363c90c49e02083020e7f8482b7d20aa8dcdf95eca6a9847396a", + "language": "MATLAB", + "lines": 1216, + "truncated": false, + "block": 9, + "row": 5943 + }, + { + "path": "welton_toolbox_github/NORDIC_wt_ker7.m", + "sha256": "0d1750f98d2509c5bab199e8004feb7f442fab4ad9140491e1f4633e0d0cd537", + "language": "MATLAB", + "lines": 1216, + "truncated": false, + "block": 9, + "row": 5941 + }, + { + "path": "welton_toolbox_github/NORDIC_wt_ker9.m", + "sha256": "139694a67d6070517b3291d793eb65a1604891da1ac84d779a04b607e68d5639", + "language": "MATLAB", + "lines": 1216, + "truncated": false, + "block": 9, + "row": 5942 + }, + { + "path": "welton_toolbox_github/coilCombine.m", + "sha256": "7f0b07c15ba41fd1c7e02a1a3ccb59918d8310c31108cd9bb770f7c29eb1bfdc", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4021 + }, + { + "path": "welton_toolbox_github/coilCombine_wt2.m", + "sha256": "1128831c9a61d318f4de92a5649773be841612fd00778e4b0cb27305be49cbd6", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 9, + "row": 4241 + }, + { + "path": "welton_toolbox_github/datapack4_VE.m", + "sha256": "081c133f31c1e227f0fff451d5ebfe6895d50f354028b535655292f2d51bcca4", + "language": "MATLAB", + "lines": 837, + "truncated": false, + "block": 9, + "row": 5928 + }, + { + "path": "welton_toolbox_github/datapack_VB.m", + "sha256": "662ddf09f40ba093ac9b583603b5417f447f02855427fab080b56f81c8be2c5c", + "language": "MATLAB", + "lines": 396, + "truncated": false, + "block": 9, + "row": 5668 + }, + { + "path": "welton_toolbox_github/datapack_VE.m", + "sha256": "abe4cc477b6ce7f9946260268f5c8bc0e55d4ba515083997eeea1b65e8ea2197", + "language": "MATLAB", + "lines": 510, + "truncated": false, + "block": 9, + "row": 5785 + }, + { + "path": "welton_toolbox_github/deming.m", + "sha256": "3934f5c61d11afe756bf0ed78b600999c0b76e8d75e31d435fc6a17b9a0e1398", + "language": "MATLAB", + "lines": 188, + "truncated": false, + "block": 9, + "row": 5394 + }, + { + "path": "welton_toolbox_github/dice.m", + "sha256": "de14fdcaa358bb0e71c8979ea31bc829d0b06a9c8649a47eeb5f26e2658da38e", + "language": "MATLAB", + "lines": 121, + "truncated": false, + "block": 9, + "row": 4950 + }, + { + "path": "welton_toolbox_github/ecalib_2d.m", + "sha256": "e944ef2bb325fa11ae3431dd6ba7d84fb649a6234429b76babf92056bf810a65", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 3958 + }, + { + "path": "welton_toolbox_github/ecalib_3d.m", + "sha256": "9b46cfe6d138b801208047721d5d0beac57b0f19869bc6706fc05a3ff7163411", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 3888 + }, + { + "path": "welton_toolbox_github/fft2c.m", + "sha256": "f56612999c2be695165574a4b60d400fb0186f5b540d2fd31c242b44c6a50938", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 2966 + }, + { + "path": "welton_toolbox_github/gen_mb3d_encodemtx_i2k.m", + "sha256": "4af4df304e14804c3deeeb8943bdf9c8540ed83dc4abadd8b63ee1f0166e3cc4", + "language": "MATLAB", + "lines": 203, + "truncated": false, + "block": 9, + "row": 5463 + }, + { + "path": "welton_toolbox_github/gen_mussel_encodemtx.m", + "sha256": "2f6c97559eac9ed0090029067da5462da88f140f7b4870fe24f64cc0f371cf85", + "language": "MATLAB", + "lines": 166, + "truncated": false, + "block": 9, + "row": 5255 + }, + { + "path": "welton_toolbox_github/im2row.m", + "sha256": "20ca9580c4f994ac827fa35dfd55efb36e346555461e1c10ec809817d80c09ad", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3149 + }, + { + "path": "welton_toolbox_github/im2row_3d.m", + "sha256": "20ca9580c4f994ac827fa35dfd55efb36e346555461e1c10ec809817d80c09ad", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3149 + }, + { + "path": "welton_toolbox_github/jaccard.m", + "sha256": "d8d318eb08811fffd66cc57b403cb3807d13233272add8c653be3f843a989d86", + "language": "MATLAB", + "lines": 170, + "truncated": false, + "block": 9, + "row": 5216 + }, + { + "path": "welton_toolbox_github/kernelEig.m", + "sha256": "2f985918696d0e325bf47f81c6d4aa947d15b583a8cb413a22d075c5d5b49aff", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 9, + "row": 4189 + }, + { + "path": "welton_toolbox_github/mapVBVD.m", + "sha256": "0b3f799626b673cdf7d4d57214bf5c83d5c4cffaf199f21465b34833799df72a", + "language": "MATLAB", + "lines": 830, + "truncated": false, + "block": 9, + "row": 5910 + }, + { + "path": "welton_toolbox_github/mapVBVD_wt.m", + "sha256": "ea02da664f535df5d80eb79aa0f02444b4dc90eb9d2a1ea2c555dd49c7c5aac6", + "language": "MATLAB", + "lines": 853, + "truncated": false, + "block": 9, + "row": 5911 + }, + { + "path": "welton_toolbox_github/mb3d_grappa_wt3.m", + "sha256": "6640ed6c4b6158331acf5323ac7bb727d06a0c03fc557ec385f6b839b9dfd451", + "language": "MATLAB", + "lines": 732, + "truncated": false, + "block": 9, + "row": 5924 + }, + { + "path": "welton_toolbox_github/mb3d_grappa_wt3p.m", + "sha256": "a52b1cf84101d7af4340b71aac5e0166b46dd2da2c5b154ad3c2692a7d6a58ab", + "language": "MATLAB", + "lines": 732, + "truncated": false, + "block": 9, + "row": 5923 + }, + { + "path": "welton_toolbox_github/noise_map_DWI_wt.m", + "sha256": "4120380a824f752d98115a3f3e49f2b65648b95b9b099d7aaf3e993456bd61e3", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4251 + }, + { + "path": "welton_toolbox_github/pocs.m", + "sha256": "f920e0684fa79a3114e1df538a01f25886249831d050dd3eed6d47a11d378a54", + "language": "MATLAB", + "lines": 671, + "truncated": false, + "block": 9, + "row": 5897 + }, + { + "path": "welton_toolbox_github/pocs_wt.m", + "sha256": "17a7860f01b2e2d1f6928cd09dfa7eecd55203a3ec293e23d00a787baddd1518", + "language": "MATLAB", + "lines": 693, + "truncated": false, + "block": 9, + "row": 5900 + }, + { + "path": "welton_toolbox_github/read_twix_hdr.m", + "sha256": "7898ce8e649ec4e2cf72b8034b7292cedaf5e36725828a0834e44bfe554c3a05", + "language": "MATLAB", + "lines": 160, + "truncated": false, + "block": 6, + "row": 15595 + }, + { + "path": "welton_toolbox_github/twix_map_obj.m", + "sha256": "ab222c5b82812af71563ee89eecc8018e861278f34281f9771183b4a36895e33", + "language": "MATLAB", + "lines": 1132, + "truncated": false, + "block": 9, + "row": 5935 + }, + { + "path": "welton_toolbox_github/zpad.m", + "sha256": "927074a74649ba385809e607550618f0784e10d4a29736066cf0595f455c25c1", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 3615 + } + ] +} \ No newline at end of file diff --git a/manifests/3f/github.com__aharoni-lab__miniscope-v4.json b/manifests/3f/github.com__aharoni-lab__miniscope-v4.json new file mode 100644 index 0000000000000000000000000000000000000000..1f4514782bf6cbc5dca2a8f038f0ec8a0549d4cb --- /dev/null +++ b/manifests/3f/github.com__aharoni-lab__miniscope-v4.json @@ -0,0 +1,120 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/aharoni-lab/miniscope-v4", + "url": "https://github.com/Aharoni-Lab/Miniscope-v4", + "host": "github.com", + "commit": "19204df37d6739a7a94b62df5d875db05be19181", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Development Files/Individual PCBs/Miniscope-v4-IMU/KiCad/BNO055_08092019/BNO055/BNO055.mod", + "sha256": "c89b08f58db957cdb71d536c26ae3098d621ce541e02c980f266cdc1dba09df6", + "language": "NEURON", + "lines": 251, + "truncated": false, + "block": 9, + "row": 6028 + }, + { + "path": "Development Files/Individual PCBs/Miniscope-v4-LED-ETL-Driver/MATLAB/LED Driver Circuit Sim.m", + "sha256": "7eeb0c6bb0cabd875ed4b572ca0ea8659856d66253b84a0ac5ea2753bede846e", + "language": "MATLAB", + "lines": 91, + "truncated": false, + "block": 9, + "row": 4215 + }, + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "Miniscope-v4-Denoising-Notebook/V4_Miniscope_noise_removal.ipynb", + "sha256": "bad63341cf5001b2bfabd5acbbfd370db4bcf7402f6c31f52284caeb9c93ae85", + "language": "Jupyter", + "lines": 408, + "truncated": false, + "block": 9, + "row": 2571 + }, + { + "path": "Miniscope-v4-MCU-Firmware/Atmel/Miniscope-v4-MCU/Miniscope-v4-MCU/I2CSlave.c", + "sha256": "adb7ccca3c778bd202f36f726896701acde34f81b3b7b3e6d828b65c62947311", + "language": "C", + "lines": 62, + "truncated": false, + "block": 9, + "row": 12 + }, + { + "path": "Miniscope-v4-MCU-Firmware/Atmel/Miniscope-v4-MCU/Miniscope-v4-MCU/I2CSlave.h", + "sha256": "77c981ee8c7220ef51791ae37d5bca03dba4c9d4784608135f9d6eb039bf8a2a", + "language": "C/C++", + "lines": 18, + "truncated": false, + "block": 9, + "row": 1137 + }, + { + "path": "Miniscope-v4-MCU-Firmware/Atmel/Miniscope-v4-MCU/Miniscope-v4-MCU/PYTHON480.h", + "sha256": "f06ce3dbf578ec0733362d1a91d27420270c7fce152b44ac25a3abc6447b8178", + "language": "C/C++", + "lines": 278, + "truncated": false, + "block": 9, + "row": 1680 + }, + { + "path": "Miniscope-v4-MCU-Firmware/Atmel/Miniscope-v4-MCU/Miniscope-v4-MCU/SPI.h", + "sha256": "21ee946f5a7c0b3cc45a4f58d6129b1f8c6966a4c5fddcf6a4459fe197a88e75", + "language": "C/C++", + "lines": 65, + "truncated": false, + "block": 9, + "row": 1196 + }, + { + "path": "Miniscope-v4-MCU-Firmware/Atmel/Miniscope-v4-MCU/Miniscope-v4-MCU/SPI_BB_PYTHON480.h", + "sha256": "76bb735625917669f9ebd6dbca6e767e5d8969994fb6a45486233bef700667dd", + "language": "C/C++", + "lines": 114, + "truncated": false, + "block": 9, + "row": 1300 + }, + { + "path": "Miniscope-v4-MCU-Firmware/Atmel/Miniscope-v4-MCU/Miniscope-v4-MCU/definitions.h", + "sha256": "fb83d972d28b4f77bf3e772ba4c8853c458c46f52806279b15206907138cd168", + "language": "C/C++", + "lines": 97, + "truncated": false, + "block": 9, + "row": 1315 + }, + { + "path": "Miniscope-v4-MCU-Firmware/Atmel/Miniscope-v4-MCU/Miniscope-v4-MCU/main.c", + "sha256": "00b49f2ef5faa6ba0dc63da7cf5174b41ecd0f9015a7a724ef5dc8558e9be7d1", + "language": "C", + "lines": 339, + "truncated": false, + "block": 9, + "row": 95 + }, + { + "path": "README.md", + "sha256": "9d5becae5af90e2fa5d0db280894f97b64d035b81fd4703724a2ce562b19b13e", + "language": "Text", + "lines": 37, + "truncated": false, + "block": 9, + "row": 14525 + } + ] +} \ No newline at end of file diff --git a/manifests/3f/github.com__iandol__opticka.json b/manifests/3f/github.com__iandol__opticka.json new file mode 100644 index 0000000000000000000000000000000000000000..f15b0329d8655e6eaf06f0e8db7a2be47b25fd0b --- /dev/null +++ b/manifests/3f/github.com__iandol__opticka.json @@ -0,0 +1,2631 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/iandol/opticka", + "url": "https://github.com/iandol/opticka/tree/V2.17.0", + "host": "github.com", + "commit": "dd582c8c3fd22468856fd54a836051a42478c62a", + "license": "LGPL-3.0", + "license_confirmed_by": "license file LICENCE.md", + "redistribution": "yes", + "files": [ + { + "path": "CoreProtocols/AreaSummationStateInfo.m", + "sha256": "dfb671a12967a6f4f4db842e65a7ffd0ed7b782df471ade87dd0eb2b3ff220fc", + "language": "MATLAB", + "lines": 383, + "truncated": false, + "block": 9, + "row": 5750 + }, + { + "path": "CoreProtocols/Back_PropagationStateInfo.m", + "sha256": "83c8622376e98673360a3dbd09963a621c0cf55902cbe4894036b8e8babdfe61", + "language": "MATLAB", + "lines": 452, + "truncated": false, + "block": 9, + "row": 5805 + }, + { + "path": "CoreProtocols/ColourGratingStateInfo.m", + "sha256": "9c7debdf464866d5baf516797fe2f37478b971da2b6a9ac8e7a484e7006668d7", + "language": "MATLAB", + "lines": 383, + "truncated": false, + "block": 9, + "row": 5757 + }, + { + "path": "CoreProtocols/DMTSFunctions.m", + "sha256": "3986e90b88ae93cbdd10fab5a8d1904c4e4002851bc379dfac21df1a4391e0a3", + "language": "MATLAB", + "lines": 175, + "truncated": false, + "block": 9, + "row": 5355 + }, + { + "path": "CoreProtocols/DMTSStateInfo.m", + "sha256": "fb09838bb15bbaf18d40cc7a5f1f1e9c45e1671e89f80780155f0dc6aa06f353", + "language": "MATLAB", + "lines": 487, + "truncated": false, + "block": 9, + "row": 5796 + }, + { + "path": "CoreProtocols/DotColourStateInfo.m", + "sha256": "4f41334ffeccc50cd9f5771888b85e2658010fc9e8a9b958371a59ed7176ca65", + "language": "MATLAB", + "lines": 368, + "truncated": false, + "block": 9, + "row": 5696 + }, + { + "path": "CoreProtocols/DotDirectionStateInfo.m", + "sha256": "de6a16a0da5890a74223513a1843356f9f1a33cd2d2458aa0d669c4e674ffd60", + "language": "MATLAB", + "lines": 354, + "truncated": false, + "block": 9, + "row": 5667 + }, + { + "path": "CoreProtocols/FastRFMapperStateInfo.m", + "sha256": "1a37946c546ba6da1e60730e5798660338411ddb6273eb15d8985f02e8fe3de9", + "language": "MATLAB", + "lines": 281, + "truncated": false, + "block": 9, + "row": 5487 + }, + { + "path": "CoreProtocols/FigureGroundStateInfo.m", + "sha256": "50b22d5a244caa9fa13122ce61d0ebcef4cd32790a743a0e7fbcf563a0a2719b", + "language": "MATLAB", + "lines": 426, + "truncated": false, + "block": 9, + "row": 5747 + }, + { + "path": "CoreProtocols/FixationOnly.m", + "sha256": "9bdcbbd5087de8d9516b57a15ba934401470fd4368c791a1da213de7b1f8ad5c", + "language": "MATLAB", + "lines": 338, + "truncated": false, + "block": 9, + "row": 5686 + }, + { + "path": "CoreProtocols/FixationTrainingAnimatedStateInfo.m", + "sha256": "270fd23c62d8e4991d03ca2d3abc4636aead0e6b17ac484bb7b52824dda25f63", + "language": "MATLAB", + "lines": 379, + "truncated": false, + "block": 9, + "row": 5737 + }, + { + "path": "CoreProtocols/FixationTrainingDistractorStateInfo.m", + "sha256": "26a00b8340f85e14ca393a92c7875991ec42e282a9e50cd8926819bfdfa2fbfe", + "language": "MATLAB", + "lines": 391, + "truncated": false, + "block": 9, + "row": 5745 + }, + { + "path": "CoreProtocols/FixationTrainingStateInfo.m", + "sha256": "711fbf28629606d9be716fc1aedf5a1dcea90ed1503f506c384ec56291a276d5", + "language": "MATLAB", + "lines": 364, + "truncated": false, + "block": 9, + "row": 5719 + }, + { + "path": "CoreProtocols/HSMTestStateInfo.m", + "sha256": "96b9ef0b7c8a1e2a5d2223fac9d8eee5e6eb0a304282d27ef8edb844b80def31", + "language": "MATLAB", + "lines": 222, + "truncated": false, + "block": 9, + "row": 5458 + }, + { + "path": "CoreProtocols/Isoluminant_Colours_StateInfo.m", + "sha256": "023c8501071e02ecd0c0925cebfa1cd1d0c87fa798f93681d5eb275116048bdc", + "language": "MATLAB", + "lines": 496, + "truncated": false, + "block": 9, + "row": 5851 + }, + { + "path": "CoreProtocols/OrientationTuningStateInfo.m", + "sha256": "a00b50cb4d380a8af3a3a4b07c6498e113f8c9272feb339d0d5d4499855c1159", + "language": "MATLAB", + "lines": 471, + "truncated": false, + "block": 9, + "row": 5826 + }, + { + "path": "CoreProtocols/PupillaryReflex.m", + "sha256": "8d8e8b2faa0ad429e045a26da5b00e95817fbe862eb5e9c271791626b02785be", + "language": "MATLAB", + "lines": 440, + "truncated": false, + "block": 9, + "row": 5809 + }, + { + "path": "CoreProtocols/RFLocaliserStateInfo.m", + "sha256": "ed6295648411b70dbf1b5d4be8e432f3081acb8c5e10a1852c28e825def68736", + "language": "MATLAB", + "lines": 407, + "truncated": false, + "block": 9, + "row": 5736 + }, + { + "path": "CoreProtocols/RevCorStateInfo.m", + "sha256": "0ac67a05e5c2e2dc08e55b0659a8690d5d1e2fbe961ae768618944d254436af0", + "language": "MATLAB", + "lines": 492, + "truncated": false, + "block": 9, + "row": 5843 + }, + { + "path": "CoreProtocols/SFTFStateInfo.m", + "sha256": "750a116a608391c3c34a3fa42fc94d7b4675f3ec2b378f4aa348803ddd953809", + "language": "MATLAB", + "lines": 241, + "truncated": false, + "block": 9, + "row": 5490 + }, + { + "path": "CoreProtocols/SaccadePhospheneStateInfo.m", + "sha256": "09355cf8e2de2cfdb03f844d834720b856d9e97a98803ae22b1bb7a68e9b703d", + "language": "MATLAB", + "lines": 525, + "truncated": false, + "block": 9, + "row": 5854 + }, + { + "path": "CoreProtocols/Saccade_AntiSaccade.m", + "sha256": "840420d66fb0113bd23df22d88a43429626e86a86e649d6b99f82ba285561a4f", + "language": "MATLAB", + "lines": 561, + "truncated": false, + "block": 9, + "row": 5856 + }, + { + "path": "CoreProtocols/Saccade_AntiSaccade_TRAIN_1.m", + "sha256": "8c4881bd6c4062d12e77280c3304b0c00135c94a0eed355132ad4a212e797c1f", + "language": "MATLAB", + "lines": 547, + "truncated": false, + "block": 9, + "row": 5846 + }, + { + "path": "CoreProtocols/Saccade_AntiSaccade_touch.m", + "sha256": "6bbc6ddf7501da29a86a2ccafa8d9644f344fe9437f9f0f17cdff9babb6ed516", + "language": "MATLAB", + "lines": 482, + "truncated": false, + "block": 9, + "row": 5777 + }, + { + "path": "CoreProtocols/Saccadic_Countermanding.m", + "sha256": "86022597db613cfef8709f45001dce3d483d04cb4abaa01d053c88acfd73ee89", + "language": "MATLAB", + "lines": 492, + "truncated": false, + "block": 9, + "row": 5834 + }, + { + "path": "CoreProtocols/Saccadic_DoubleStep.m", + "sha256": "630d0ab7ccd5a25f8fd0bd0a5ec212f9a30e3b023ab6e5d52f35829027836fcc", + "language": "MATLAB", + "lines": 455, + "truncated": false, + "block": 9, + "row": 5790 + }, + { + "path": "CoreProtocols/Saccadic_DoubleStep_TRAIN_1.m", + "sha256": "a23556ed02e1f3a633590fad25018ddf4cbbf6cd8c9802188ef59308196f6ab0", + "language": "MATLAB", + "lines": 471, + "truncated": false, + "block": 9, + "row": 5817 + }, + { + "path": "CoreProtocols/Saccadic_DoubleStep_touch.m", + "sha256": "f72fd4f1c82b6b6efb2f6b6db1533c999e3ea0bfb69855d65321d24bb7f9b96b", + "language": "MATLAB", + "lines": 424, + "truncated": false, + "block": 9, + "row": 5758 + }, + { + "path": "CoreProtocols/TwoFigureGroundStateInfo.m", + "sha256": "b1695b56334ab8da597cc614a1683277af3b0f406db80dee1db5bd1fa0c5d697", + "language": "MATLAB", + "lines": 273, + "truncated": false, + "block": 9, + "row": 5566 + }, + { + "path": "CoreProtocols/Two_Images.m", + "sha256": "5fd83d858ecbfe4f8ddff3ff82a2a025413fe5343af2835b549d3a3a4e4c19b7", + "language": "MATLAB", + "lines": 445, + "truncated": false, + "block": 9, + "row": 5811 + }, + { + "path": "CoreProtocols/VEPTest.m", + "sha256": "493b579b64a64d69d323a01077710f2d4a38f5048dc90b8ac42d2f5aae98c732", + "language": "MATLAB", + "lines": 328, + "truncated": false, + "block": 9, + "row": 5670 + }, + { + "path": "CoreProtocols/fNIRS.m", + "sha256": "8a2f7d0ecf92fa7a851bda94bbdae1d0f785e849ba13850ffd14eeb2228e6ad1", + "language": "MATLAB", + "lines": 336, + "truncated": false, + "block": 9, + "row": 5683 + }, + { + "path": "CoreProtocols/myUserFunctions.m", + "sha256": "1c93399222d8dd8e9a3e1b930777f7c69cf6c6e187c5b646ea868bde025d7621", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 4060 + }, + { + "path": "LICENCE.md", + "sha256": "5a567cbf43a20910a80e0f9ad8e1a0ea28143b1861f6c31a0d1bc0ed29e247d8", + "language": "License", + "lines": 157, + "truncated": false, + "block": 9, + "row": 2895 + }, + { + "path": "README.md", + "sha256": "19b2b7b3ecd8b47d906731fd67339184db6f4f24d22652ea2202e72010ed2ee3", + "language": "Text", + "lines": 119, + "truncated": false, + "block": 9, + "row": 14740 + }, + { + "path": "addOptickaToPath.m", + "sha256": "9b19a13e394e48b7d9da486c861ff431521bbe81e2ef8c49c463299ce90eb3e6", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 4330 + }, + { + "path": "analysis/LFPAnalysis.m", + "sha256": "133b0d0fea63c1498f9556079f69c53adcd22435b379499b531469abe7c97cdd", + "language": "MATLAB", + "lines": 3106, + "truncated": false, + "block": 9, + "row": 6014 + }, + { + "path": "analysis/LFPMeta.m", + "sha256": "fd557efc3c445615fa515ff743197a829dd7605b31ce6247aff182964ea6a716", + "language": "MATLAB", + "lines": 897, + "truncated": false, + "block": 9, + "row": 5878 + }, + { + "path": "analysis/analysisCore.m", + "sha256": "ff33956e00dfc61792a0ed77e88e5fbc226b0129790f6e83713886061249744b", + "language": "MATLAB", + "lines": 1373, + "truncated": false, + "block": 9, + "row": 5959 + }, + { + "path": "analysis/eyelinkAnalysis.m", + "sha256": "8d5ace485dd61a882e4c8279b152a31e13f0f4000bb141ee13e1aa01d9305956", + "language": "MATLAB", + "lines": 2453, + "truncated": false, + "block": 9, + "row": 6010 + }, + { + "path": "analysis/iRecAnalysis.m", + "sha256": "6ee89cfb55270499ae1f9b34d8616513f1336b0792985c0696cbbac70ddf8231", + "language": "MATLAB", + "lines": 2031, + "truncated": false, + "block": 9, + "row": 5993 + }, + { + "path": "analysis/spikeAnalysis.m", + "sha256": "af404bd02dda0fbaf372c804c4b8ec0bcce84e1b113a4d2dbc1e57abe0eb1fb6", + "language": "MATLAB", + "lines": 1503, + "truncated": false, + "block": 9, + "row": 5972 + }, + { + "path": "analysis/tobiiAnalysis.m", + "sha256": "e64937298c3528610a795faba089de170a3d73348bd2ae43f556663fd6a46723", + "language": "MATLAB", + "lines": 2273, + "truncated": false, + "block": 9, + "row": 6005 + }, + { + "path": "calibration/I1Demo.m", + "sha256": "edae73a2e98b94883dbef33f8934808dfdade6e1786cb46b4b7ae212c4220b44", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3926 + }, + { + "path": "calibration/calibrateLuminance.m", + "sha256": "df2739c39dd41e619a3fcc2ed3abaec967ef8d4395bcd2a38f5f9372036673ac", + "language": "MATLAB", + "lines": 1468, + "truncated": false, + "block": 9, + "row": 5966 + }, + { + "path": "calibration/calibrateLuminanceNew.m", + "sha256": "4e521948dca41ffaf5ea81a08cf2029f675fb77894b20c9420f3edfa063eab7a", + "language": "MATLAB", + "lines": 1472, + "truncated": false, + "block": 9, + "row": 5967 + }, + { + "path": "calibration/calibrateSize.m", + "sha256": "6c1bdfbe5f89b2116290a8ddfd9a25881dcb3847f74a880b7239af913e912d6e", + "language": "MATLAB", + "lines": 187, + "truncated": false, + "block": 9, + "row": 5208 + }, + { + "path": "calibration/ccal.m", + "sha256": "9287142b2aff381542bb2deb8fbe56d47c88f85c186e29c2b52401807bf4f2e9", + "language": "MATLAB", + "lines": 391, + "truncated": false, + "block": 9, + "row": 5636 + }, + { + "path": "calibration/colourManager.m", + "sha256": "261d7adebd0db452d2e08bb226ed5e730624488b90fbedefbc81e4361274baf4", + "language": "MATLAB", + "lines": 361, + "truncated": false, + "block": 9, + "row": 5568 + }, + { + "path": "communication/alyxManager.m", + "sha256": "0aa3acc8ddc221fccde94b72af36747083c6b6901ed8795d9e59e36fd0f8d5f7", + "language": "MATLAB", + "lines": 1863, + "truncated": false, + "block": 9, + "row": 5988 + }, + { + "path": "communication/arduinoIOPort.m", + "sha256": "ab429e7a90edc73bf3d82eabde2f1cad405bc328a71e26deb5bca0f83236f8d0", + "language": "MATLAB", + "lines": 620, + "truncated": false, + "block": 9, + "row": 5876 + }, + { + "path": "communication/arduinoManager.m", + "sha256": "376dfcb80f6e62a49e7be774a9c707c1f7fd62d29101b31080c09bbfd1131448", + "language": "MATLAB", + "lines": 448, + "truncated": false, + "block": 9, + "row": 5689 + }, + { + "path": "communication/arduinoSerial.m", + "sha256": "13b4a0fa431f584dcf9ad33ab17eaec9f606df06c0766401d8eca9689832ff9d", + "language": "MATLAB", + "lines": 2366, + "truncated": false, + "block": 9, + "row": 6002 + }, + { + "path": "communication/arduinoSerialPort.m", + "sha256": "1c243aa2004844438db6799cfabe4efc7b141567831ba0675be7a3ece3fa32b6", + "language": "MATLAB", + "lines": 2153, + "truncated": false, + "block": 9, + "row": 5996 + }, + { + "path": "communication/awsManager.m", + "sha256": "0b6806cff2aa83f9fad3f1951d2e91ed712e1a6eeba1a7bc3d4979f82002cb79", + "language": "MATLAB", + "lines": 114, + "truncated": false, + "block": 9, + "row": 4721 + }, + { + "path": "communication/dPixxManager.m", + "sha256": "cf653407ad552317c898b5bda33bda505312b68fc975d2b55fc6c17279423753", + "language": "MATLAB", + "lines": 311, + "truncated": false, + "block": 9, + "row": 5502 + }, + { + "path": "communication/dataConnection.m", + "sha256": "df76615d68a0821c9249d5fa9f7edaacbc05473fcc43321133dc795fed9dce0e", + "language": "MATLAB", + "lines": 1188, + "truncated": false, + "block": 9, + "row": 5920 + }, + { + "path": "communication/dumpmsgpack.m", + "sha256": "ecb005816f6c59d8c4a2021e9b33a8b31f993985c1b50e1043561fd9bbb5efcb", + "language": "MATLAB", + "lines": 268, + "truncated": false, + "block": 9, + "row": 5462 + }, + { + "path": "communication/eyeOccluder.m", + "sha256": "211f3edf9f31df370517a0a91b82e36f45d41f9e397acf59d8ea1d7c3c327422", + "language": "MATLAB", + "lines": 90, + "truncated": false, + "block": 9, + "row": 4116 + }, + { + "path": "communication/ioManager.m", + "sha256": "2f58a37a7ee7654d9d75fda1835d018e82eeff54c0de1102c64d843bef7ca131", + "language": "MATLAB", + "lines": 269, + "truncated": false, + "block": 9, + "row": 5299 + }, + { + "path": "communication/joystickManager.m", + "sha256": "6c83037fe578bbb7ad2f3a21df3cc69b37cd1360eb094addbdfe7a4c39f5a80b", + "language": "MATLAB", + "lines": 128, + "truncated": false, + "block": 9, + "row": 4737 + }, + { + "path": "communication/jzmqConnection.m", + "sha256": "68e38c9606daa08ec7749815210ee60c7a06e22f77057c80ec3fc78a2a05f519", + "language": "MATLAB", + "lines": 753, + "truncated": false, + "block": 9, + "row": 5875 + }, + { + "path": "communication/labJack.m", + "sha256": "1c2021853fd21c75c0c70069bf61fc49c303f03170268c045b1822097af8be2f", + "language": "MATLAB", + "lines": 913, + "truncated": false, + "block": 9, + "row": 5913 + }, + { + "path": "communication/labJackT.m", + "sha256": "d501cf99fdcc0b12b729d37d9680c6608bfc7c9cabc20d341958753f4eae7b27", + "language": "MATLAB", + "lines": 914, + "truncated": false, + "block": 9, + "row": 5898 + }, + { + "path": "communication/magstimManager.m", + "sha256": "bce425b29beacf76af37eacac11c933231a71249e4cb31e354dcd39b5d0653ef", + "language": "MATLAB", + "lines": 130, + "truncated": false, + "block": 9, + "row": 4819 + }, + { + "path": "communication/mentalabManager.m", + "sha256": "c086f1aa4f2483b7b0c618ba8e4c8774e77b9ca47b398e8f24eca8ba80e23620", + "language": "MATLAB", + "lines": 282, + "truncated": false, + "block": 9, + "row": 5376 + }, + { + "path": "communication/minioManager.m", + "sha256": "ee0f3eca40755545bf8820b3c3d707adfc474db456d22550a9a40a65ce003236", + "language": "MATLAB", + "lines": 339, + "truncated": false, + "block": 9, + "row": 5538 + }, + { + "path": "communication/nirSmartManager.m", + "sha256": "0708f548e8c9490b7429885b86b3cd5e7e02567aa435eb476b15adb69187b21c", + "language": "MATLAB", + "lines": 284, + "truncated": false, + "block": 9, + "row": 5371 + }, + { + "path": "communication/omniplex/ReadPLX/PL2Ad.m", + "sha256": "941acc5565388dc69f56f4a733033d4c0ed4611efc9a8fbf8a72687469501e8d", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3911 + }, + { + "path": "communication/omniplex/ReadPLX/PL2AdBySource.m", + "sha256": "58e18272d146f45e2976c4097f83cd8ed412ab67356cd3807f743b637aed9d60", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 4066 + }, + { + "path": "communication/omniplex/ReadPLX/PL2AdSpan.m", + "sha256": "0bb9f0402a88fb82973d37f44533647d37ad486ee4c603e8dd8f7a69dee766ce", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3768 + }, + { + "path": "communication/omniplex/ReadPLX/PL2AdSpanBySource.m", + "sha256": "a82f794de826e569e9fbda24e02406e54d96ace837452a6cd5650b7c52cb3c93", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3899 + }, + { + "path": "communication/omniplex/ReadPLX/PL2AdTimeSpan.m", + "sha256": "feb9f2a2d2f748e696ba9b5200b95536520f093e9049c787cf6ee1fc9b51ede2", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 4035 + }, + { + "path": "communication/omniplex/ReadPLX/PL2AdTimeSpanBySource.m", + "sha256": "6acd5566b38dad17b0b79da25c0be10b1c9258c323def02e574667c18188f39d", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 4150 + }, + { + "path": "communication/omniplex/ReadPLX/PL2EventTs.m", + "sha256": "191a866c4906ddaac21337550ebae37e60b81a3d13532d36e641d8063924513b", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3584 + }, + { + "path": "communication/omniplex/ReadPLX/PL2EventTsBySource.m", + "sha256": "3afc6760e7071801f75562dfabc6e09ff0026d60e985de46c65f83e2176ca209", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3718 + }, + { + "path": "communication/omniplex/ReadPLX/PL2GetFileIndex.m", + "sha256": "e3b588c7f0d022a1862818718d4a9b877cb8c0a818da9dbbcbf0d2cdf2838771", + "language": "MATLAB", + "lines": 69, + "truncated": false, + "block": 9, + "row": 4192 + }, + { + "path": "communication/omniplex/ReadPLX/PL2Print.m", + "sha256": "ca7ca34de57bbdeb085cd5e5540232fc83106d50f10f80e0b557e8c8acf04270", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 3837 + }, + { + "path": "communication/omniplex/ReadPLX/PL2ReadFileIndex.m", + "sha256": "70b5590eb2ff2dc35812069b44b6534afba85eada5da77f1b48e9fd3c45e4e2f", + "language": "MATLAB", + "lines": 154, + "truncated": false, + "block": 9, + "row": 5453 + }, + { + "path": "communication/omniplex/ReadPLX/PL2ReadFirstDataBlock.m", + "sha256": "3d3604aab5493f1f203b2183dd122d54ea6ca2ce4d235ff07d4678d13a53eed4", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 4290 + }, + { + "path": "communication/omniplex/ReadPLX/PL2ReadNextDataBlock.m", + "sha256": "71b3327bcd39c7b2b59bec48149e0d48721b6860a2c3e61eef0c99e80315c2a4", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 4300 + }, + { + "path": "communication/omniplex/ReadPLX/PL2StartStopTs.m", + "sha256": "464a0123e3af181409532d806940d77224719e07a350034a6120b3caf82f5645", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3250 + }, + { + "path": "communication/omniplex/ReadPLX/PL2Ts.m", + "sha256": "0521fde17bf06d8c872361b6af564e19c48556e0fc1a4234782fc3eeb21457f2", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3571 + }, + { + "path": "communication/omniplex/ReadPLX/PL2TsBySource.m", + "sha256": "e8c29a5499285a18b0dbd53c71bc8e029b0687b45165c937f5f9c5490db48907", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3698 + }, + { + "path": "communication/omniplex/ReadPLX/PL2Waves.m", + "sha256": "cfed2d032e5b5bfccba5e840ee6db29578e20a80438afea1037e09ac85c54266", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3753 + }, + { + "path": "communication/omniplex/ReadPLX/PL2WavesBySource.m", + "sha256": "1c6cfe0a3b87ed088333f7919a6e09477735ae3a27fb8c3099f941916a16b04e", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3883 + }, + { + "path": "communication/omniplex/ReadPLX/build_and_verify_mexPlex.m", + "sha256": "83da662eddefb8afe6363b5a36e572c72cfab6490a29b15e3ca540a3ba2e32cb", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 3843 + }, + { + "path": "communication/omniplex/ReadPLX/ddt.m", + "sha256": "abc647944d288667890cc21dc95f798437b3b7f9063d48c208556700a7ceca65", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3420 + }, + { + "path": "communication/omniplex/ReadPLX/ddt_v.m", + "sha256": "33dfb38c0b06600211455036a13a3914f0ca502d167f83f0e1fcd755958bc532", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3445 + }, + { + "path": "communication/omniplex/ReadPLX/ddt_write_v.m", + "sha256": "8b5f1cca095ac56a62009d86a2661a5f891b71b880eec64168094b00e927b3f4", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3521 + }, + { + "path": "communication/omniplex/ReadPLX/plx_ad.m", + "sha256": "7b9509bf3a2359ec4618c6a017c8da652cc0da357e2abe37e9c0070230d4b61c", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 9, + "row": 4323 + }, + { + "path": "communication/omniplex/ReadPLX/plx_ad_chanmap.m", + "sha256": "6991048ff3ae3d77daa6c23c3500fd1327b0ecce7a0107d1862c21540bd8e818", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 9, + "row": 4020 + }, + { + "path": "communication/omniplex/ReadPLX/plx_ad_gap_info.m", + "sha256": "9226040d7cf923347ec37a63a167671a1703d5c34f0496c1cbbcf919cc8323d3", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 9, + "row": 4091 + }, + { + "path": "communication/omniplex/ReadPLX/plx_ad_info.m", + "sha256": "2aaed1d3f27a76200a94505f2ad9dc5a0596a43936651eccbdc62b1ff417a513", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3642 + }, + { + "path": "communication/omniplex/ReadPLX/plx_ad_resolve_channel.m", + "sha256": "e91a8fd095f41dbd7502465c2e0b985fb76232083ba1b74b58b72a30ae5ad477", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3722 + }, + { + "path": "communication/omniplex/ReadPLX/plx_ad_span.m", + "sha256": "6e0c316e7251bd215956935381a535b86d40c0d97ff2a6b9332a070879c72f8c", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 9, + "row": 4124 + }, + { + "path": "communication/omniplex/ReadPLX/plx_ad_span_v.m", + "sha256": "885e9ec0858701fab96792514c4620987f33f7c34f0522a7638213ba1f04b17d", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 3997 + }, + { + "path": "communication/omniplex/ReadPLX/plx_ad_v.m", + "sha256": "4f59033fd6d8e54feaaeeb2538b9ae81bc482b4e4242f488f54ac2e539274f2f", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 4203 + }, + { + "path": "communication/omniplex/ReadPLX/plx_adchan_freqs.m", + "sha256": "8b4b8a49161761f842711cb90ad6c4a6bb831bba1d6e67ca2d3ab45f9926f328", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3472 + }, + { + "path": "communication/omniplex/ReadPLX/plx_adchan_gains.m", + "sha256": "75ff089fa9c33c0f331e33f3d033781e1d593dc5f72515adf8087828c6dd8ac6", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3424 + }, + { + "path": "communication/omniplex/ReadPLX/plx_adchan_names.m", + "sha256": "a6e563d1e77ba62d0eeb1ed05d5389045dec1a3e96c640d114def48f6a63758a", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3541 + }, + { + "path": "communication/omniplex/ReadPLX/plx_adchan_samplecounts.m", + "sha256": "01bbd5e0b3dda7185beb9edd5fae7aac9f0a3d3c664c03d627044bb02fc2a484", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3489 + }, + { + "path": "communication/omniplex/ReadPLX/plx_chan_filters.m", + "sha256": "5ac7e02ba8197641f70b902217ab3c09cea22eac00c6ebe0fb745de9fe81c9a4", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 9, + "row": 3421 + }, + { + "path": "communication/omniplex/ReadPLX/plx_chan_gains.m", + "sha256": "215b7d49baa944702787618e1dab16f373c4838ce87c3830ae7692395aad0fa6", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3438 + }, + { + "path": "communication/omniplex/ReadPLX/plx_chan_names.m", + "sha256": "66da6d066e26473ffe4e2c796bf63137fce8fe0fde5717301d3337c76c45d6fd", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3559 + }, + { + "path": "communication/omniplex/ReadPLX/plx_chan_thresholds.m", + "sha256": "087eab7f0c3f62e310a8ffac4187d331ae99245a5797bc7d03526e62ef98bbca", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3490 + }, + { + "path": "communication/omniplex/ReadPLX/plx_chanmap.m", + "sha256": "5bccfdaee7a55e6bb83084dbe0d7b3796fa060cc84234b3cb0b5b3000df1a57d", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3938 + }, + { + "path": "communication/omniplex/ReadPLX/plx_close.m", + "sha256": "d80f007b01affe9e1105bf84bb0d17a850587debc8de319c687d986240590e8e", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3024 + }, + { + "path": "communication/omniplex/ReadPLX/plx_event_chanmap.m", + "sha256": "7a7a39355e9e1f32bf96bceed22f912ca1a1b2e63a5a6408b9307c567e136fe9", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3983 + }, + { + "path": "communication/omniplex/ReadPLX/plx_event_names.m", + "sha256": "112e3787bb9b2f64a32018dfd996809ad602d89799dea8f61dbfa303665b92e2", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3684 + }, + { + "path": "communication/omniplex/ReadPLX/plx_event_resolve_channel.m", + "sha256": "32b91cda49285aafebeea0013531c73d3d6e6871b134c08f5ece4d2913ec5121", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3739 + }, + { + "path": "communication/omniplex/ReadPLX/plx_event_ts.m", + "sha256": "213b6fd827f192b5ccb7fa91c053bd602284aa5cb58a806fe357100dbd032a80", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 9, + "row": 4228 + }, + { + "path": "communication/omniplex/ReadPLX/plx_info.m", + "sha256": "877d70e561553da261aada38fbe4487881238a5fc88e6c0b69e03bed7acfd3d6", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4545 + }, + { + "path": "communication/omniplex/ReadPLX/plx_information.m", + "sha256": "b9d79ebb54adea7757e5ba3b558b0069d45216e9b6da57556f6014476da97171", + "language": "MATLAB", + "lines": 91, + "truncated": false, + "block": 9, + "row": 4697 + }, + { + "path": "communication/omniplex/ReadPLX/plx_mexplex_version.m", + "sha256": "0e4b79321a7ce8390698046c7a6cada3382a4a5d39e736f8883a3a5fa1088a48", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3058 + }, + { + "path": "communication/omniplex/ReadPLX/plx_resolve_channel.m", + "sha256": "772a23ad84a0016c396c3c302a056e0d798014939d9434c121aa4e5be4642183", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3696 + }, + { + "path": "communication/omniplex/ReadPLX/plx_spike_info.m", + "sha256": "764354d3c8363c4a2ba08358679266ac987bc1d47cbcd2ae8be65e0c2d8adf53", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 3820 + }, + { + "path": "communication/omniplex/ReadPLX/plx_ts.m", + "sha256": "d15c135c632f72f91864a61a4a6253e2075d383d04a5cb00d4987b18659d2a37", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3619 + }, + { + "path": "communication/omniplex/ReadPLX/plx_vt_interpret.m", + "sha256": "618b8aea1d544b49422230bf1849fe2364e82fe474c8ccf534e890713898f656", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 9, + "row": 4039 + }, + { + "path": "communication/omniplex/ReadPLX/plx_waves.m", + "sha256": "218bbede7022d1808a9b36a093007d5e95691c331e5e081c7da80a737b7addd6", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 4156 + }, + { + "path": "communication/omniplex/ReadPLX/plx_waves_v.m", + "sha256": "5d2d3260d494923eecbe1fbc6979be531719069fabaf4d34f5c1dbb8d3baa763", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 9, + "row": 4031 + }, + { + "path": "communication/omniplex/ReadPLX/readall.m", + "sha256": "3f2f484ebaf33696b0f0ad52425fbc5ba6779750da5d35fbb23dddecb88606ce", + "language": "MATLAB", + "lines": 127, + "truncated": false, + "block": 9, + "row": 4974 + }, + { + "path": "communication/omniplex/ft_read_plxheader.m", + "sha256": "1a0b89e7a661c005b54fa6afa6d147f7946438154d896bfe9631adbd333aa512", + "language": "MATLAB", + "lines": 756, + "truncated": false, + "block": 9, + "row": 5877 + }, + { + "path": "communication/omniplex/kbhit.m", + "sha256": "0d0c905dabaef8a7eb6ccbd1ee6842b5fd879965f64e64a3999a99e59a315e42", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 9, + "row": 4706 + }, + { + "path": "communication/omniplex/nex/exampleSaveDataInNexFile.m", + "sha256": "aace2d4e0a7353903c8d55a49e7dd48bd93e47d144a83d317ebfd20e7c7cf43f", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 9, + "row": 4270 + }, + { + "path": "communication/omniplex/nex/nexAddContinuous.m", + "sha256": "7b40d0ae266e5c6acf7efe664e29b7370436a7f7cd29a2b87a4d8b7e7d3fe286", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3902 + }, + { + "path": "communication/omniplex/nex/nexAddEvent.m", + "sha256": "f030860cd1470afcc8cd74344f783279f08256487579669b2114424e3479518a", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3625 + }, + { + "path": "communication/omniplex/nex/nexAddInterval.m", + "sha256": "4c6919d7f50d6868627184e2318c8951d28826a7d2a894f4341dc4a2734a7274", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3872 + }, + { + "path": "communication/omniplex/nex/nexAddNeuron.m", + "sha256": "37550da1ca1a2099e071e893d25482d2e5894f215999bfac8a024edeee880e3a", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3761 + }, + { + "path": "communication/omniplex/nex/nexAddWaveform.m", + "sha256": "53ebeb2f5019e9a2fbc348929919a041b05f4caadf83f9b6a635260fc56ce705", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 9, + "row": 4065 + }, + { + "path": "communication/omniplex/nex/nexCreateFileData.m", + "sha256": "386d88c66df435fc05c7a1ddcbb5564b9eef9cf8f3c2f22711332c44df1d082f", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3226 + }, + { + "path": "communication/omniplex/nex/readNexFile.m", + "sha256": "ea3998d7471dd6ab327a95909c72282d37d2d1b356292d831d61e36bdd65390e", + "language": "MATLAB", + "lines": 246, + "truncated": false, + "block": 9, + "row": 5572 + }, + { + "path": "communication/omniplex/nex/writeNexFile.m", + "sha256": "c47c78ea3e258e46d7d52585db8f1e74f56a2c8e977bcff7a1f3ee1d68761f39", + "language": "MATLAB", + "lines": 505, + "truncated": false, + "block": 9, + "row": 5706 + }, + { + "path": "communication/omniplex/opxOnline.m", + "sha256": "a37f68a1fde6902c98f905800b10d9c95de9d8203db912bff7b088c048e89384", + "language": "MATLAB", + "lines": 1392, + "truncated": false, + "block": 9, + "row": 5945 + }, + { + "path": "communication/omniplex/opxRunMaster.m", + "sha256": "ec33d99612792b91368bc3c51cab4269dd0762efc32b95ace9c3be9420c6af9b", + "language": "MATLAB", + "lines": 2, + "truncated": false, + "block": 9, + "row": 2933 + }, + { + "path": "communication/omniplex/opxRunSlave.m", + "sha256": "6f665e16d405da22a99e00ed8b1d9e2ff7956e4445104d7cca074b42ea9c80a3", + "language": "MATLAB", + "lines": 2, + "truncated": false, + "block": 9, + "row": 2928 + }, + { + "path": "communication/omniplex/opx_opt_ui.m", + "sha256": "d4ec6910737562320ec348fe1bbfd6bcf5fa18d07e651826e7d0669e1e82a994", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 9, + "row": 4858 + }, + { + "path": "communication/omniplex/opx_ui.m", + "sha256": "663271258c1300ee6cc8e775bca6b8b057d7dd6ff30a1b5b6bea46d768ef8d38", + "language": "MATLAB", + "lines": 246, + "truncated": false, + "block": 9, + "row": 5528 + }, + { + "path": "communication/omniplex/parseOpxSpikes.m", + "sha256": "9644a13b00d00fbe47aabf0670cc6cd7944e8fb8692d27f2f6561345382c00c6", + "language": "MATLAB", + "lines": 319, + "truncated": false, + "block": 9, + "row": 5473 + }, + { + "path": "communication/omniplex/plxReader.m", + "sha256": "d78b4e532c26eef7e58dcea4c305590a671f7a903a34c7b9995847f5b53cb75d", + "language": "MATLAB", + "lines": 1364, + "truncated": false, + "block": 9, + "row": 5971 + }, + { + "path": "communication/parsemsgpack.m", + "sha256": "94f521876195577a9cafebc55fe8e262e41a35421ca88857a02b238f82738112", + "language": "MATLAB", + "lines": 196, + "truncated": false, + "block": 9, + "row": 5288 + }, + { + "path": "communication/plusplusManager.m", + "sha256": "513c8da1b0f3a196914df990788da260b89c035c7a06bfc3cd923771f4b3c57b", + "language": "MATLAB", + "lines": 453, + "truncated": false, + "block": 9, + "row": 5671 + }, + { + "path": "communication/rewardManager.m", + "sha256": "ab31e55f236cd4a77c523e1033a43e72a5e7a2ff1fb19292b14408964e6ed396", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 9, + "row": 3152 + }, + { + "path": "communication/runServer.m", + "sha256": "04b75ea5f19dc0d5192caf455142b531df91deb72d7d361f06a5e9c462a7cb15", + "language": "MATLAB", + "lines": 1, + "truncated": false, + "block": 9, + "row": 2917 + }, + { + "path": "communication/sendSerialIOPort.m", + "sha256": "2cd491de8ab3055b98b55301e072abc4df429dd5f14704d4d1fb457234e9d833", + "language": "MATLAB", + "lines": 149, + "truncated": false, + "block": 9, + "row": 4949 + }, + { + "path": "communication/touchManager.m", + "sha256": "d97106f7daf96d6fe21c1fc7ad06693fb8a5b5a10f808909772a75fd8cf11d8d", + "language": "MATLAB", + "lines": 1334, + "truncated": false, + "block": 9, + "row": 5956 + }, + { + "path": "communication/zmqConnection.m", + "sha256": "1a5c131e1b0f4ee305431ef814aacbecc6a7f6479e0f7af3132929fefea01406", + "language": "MATLAB", + "lines": 606, + "truncated": false, + "block": 9, + "row": 5828 + }, + { + "path": "core/DefaultStateInfo.m", + "sha256": "4578d580d3cc481a9fb29e25b327e527fa2e4f0ac65920451e5542daba93d301", + "language": "MATLAB", + "lines": 518, + "truncated": false, + "block": 9, + "row": 5872 + }, + { + "path": "core/optickaCore.m", + "sha256": "ed99887df28d393a594d92ea0d4e8d5e048489e4d58fb84653675d101af952a3", + "language": "MATLAB", + "lines": 1167, + "truncated": false, + "block": 9, + "row": 5933 + }, + { + "path": "core/runExperiment.m", + "sha256": "f38c3f6cd414341069760b7605093b28cc5fa4f623b489c98a417643c5eedfc0", + "language": "MATLAB", + "lines": 3528, + "truncated": false, + "block": 9, + "row": 6016 + }, + { + "path": "core/runOpticka.m", + "sha256": "e87bef8234a72a973f9e60130c9742cbf58fdd58fbe750e81ed83d0b1b432012", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 9, + "row": 3137 + }, + { + "path": "core/screenManager.m", + "sha256": "a566768033405f324a75bc803415b09001fa363b790cd2530523f6ca4f2fbddd", + "language": "MATLAB", + "lines": 2534, + "truncated": false, + "block": 9, + "row": 6011 + }, + { + "path": "core/stateMachine.m", + "sha256": "baf2bdd2b63c093f7ade912b2dce9e6817bb48093bf7770452c5c4b718dd08d2", + "language": "MATLAB", + "lines": 1039, + "truncated": false, + "block": 9, + "row": 5937 + }, + { + "path": "core/stateMachineTree.m", + "sha256": "e607ada7f2cfb9aebb8edde87c60ceab157acb3f806e72a225d40221daf6f9fa", + "language": "MATLAB", + "lines": 577, + "truncated": false, + "block": 9, + "row": 5829 + }, + { + "path": "core/stateNode.m", + "sha256": "c0f88b28cd4ed100ebf42672967bfe7b3e6bf29dcad23f4d6b770daa4bcca78f", + "language": "MATLAB", + "lines": 227, + "truncated": false, + "block": 9, + "row": 5422 + }, + { + "path": "core/taskSequence.m", + "sha256": "0d9083f5ba8ea2eea81eb97326d6ba15f2e3bed6a7df4071377a01a4eb2849db", + "language": "MATLAB", + "lines": 1302, + "truncated": false, + "block": 9, + "row": 5951 + }, + { + "path": "core/userFunctions.m", + "sha256": "09179eda28bfd14b69c7ae5992217c922d47ec13ae583ebeb8a3c2ec5bbf0b74", + "language": "MATLAB", + "lines": 152, + "truncated": false, + "block": 9, + "row": 5132 + }, + { + "path": "data/DataHash.m", + "sha256": "c57a2b0bcd53a8bd8c4cb64c1df3dc7e86a5293e51dba0a6badf3f4e32e840c4", + "language": "MATLAB", + "lines": 534, + "truncated": false, + "block": 9, + "row": 5797 + }, + { + "path": "data/HEDTagger.m", + "sha256": "35532c46865a0314c730950e37c09d3231011b54658111a5ee8232e58e3a16cc", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 4068 + }, + { + "path": "data/HEDTags.m", + "sha256": "4bab6fa5e55b53a61056d92ef09c832ca6cb11860be9af7c1b888b3068e1216e", + "language": "MATLAB", + "lines": 1139, + "truncated": true, + "block": 9, + "row": 6021 + }, + { + "path": "data/behaviouralRecord.m", + "sha256": "ae45acb92a5ca84945c6f7ef4681a224d2818115aedd91fd6e7771a71a08cee9", + "language": "MATLAB", + "lines": 521, + "truncated": false, + "block": 9, + "row": 5730 + }, + { + "path": "data/getDensity.m", + "sha256": "80c0ca35570c1f72c1dcc6cec6d8c9de90a966554d48b9c3270d30241bdb1c8c", + "language": "MATLAB", + "lines": 2033, + "truncated": false, + "block": 9, + "row": 5986 + }, + { + "path": "data/timeLogger.m", + "sha256": "88cfc4d14e725dc6768fe366d97d05fd518b94225555eb0af1dbfb4dc9fe4dba", + "language": "MATLAB", + "lines": 599, + "truncated": false, + "block": 9, + "row": 5787 + }, + { + "path": "data/touchData.m", + "sha256": "1a4f324f143283637698d89c318db72064c23148dd9b03d9d0e2c22ca16d3a94", + "language": "MATLAB", + "lines": 169, + "truncated": false, + "block": 9, + "row": 5036 + }, + { + "path": "eyetracker/edfmex.m", + "sha256": "be78cdddac08d57351cfc613749d3cfe8ce33e0f35b2a434c4805175cd0dca77", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 9, + "row": 4888 + }, + { + "path": "eyetracker/eyelinkCustomCallback.m", + "sha256": "1f3c3b4e36d69c3da154485f6c934613400058e26f5a6464189918b5b8ba10c9", + "language": "MATLAB", + "lines": 581, + "truncated": false, + "block": 9, + "row": 5803 + }, + { + "path": "eyetracker/eyelinkManager.m", + "sha256": "b0a95085201747f26e9995e12b6200ad57619066f5c0ba4a5a1276efa040590f", + "language": "MATLAB", + "lines": 990, + "truncated": false, + "block": 9, + "row": 5917 + }, + { + "path": "eyetracker/eyetrackerCore.m", + "sha256": "f8abdc4074cf4ae1c497c6a2f903040315b6d8da21d5d66f003961b1be945bff", + "language": "MATLAB", + "lines": 1308, + "truncated": false, + "block": 9, + "row": 5968 + }, + { + "path": "eyetracker/eyetrackerSmooth.m", + "sha256": "e49acb1479feb6265373bdc06edcad23a3bb585fca06c650dca5be922f7d3906", + "language": "MATLAB", + "lines": 145, + "truncated": false, + "block": 9, + "row": 5034 + }, + { + "path": "eyetracker/iRecManager.m", + "sha256": "eb0e5294da0cce79bd3fe3fb859a138196ffbc77995352f7b2e5dfe54864d0b3", + "language": "MATLAB", + "lines": 1095, + "truncated": false, + "block": 9, + "row": 5925 + }, + { + "path": "eyetracker/iView_checkfix_demo.m", + "sha256": "ad352486d211d6f59ab77d339c5e4c1dae7a1d1143baf20ca7807401917fac12", + "language": "MATLAB", + "lines": 159, + "truncated": false, + "block": 9, + "row": 5219 + }, + { + "path": "eyetracker/pupilCoreManager.m", + "sha256": "380c829db08d550123755d237c89b44a1c506972f409d6bd5b2c6d0af8ac4ff9", + "language": "MATLAB", + "lines": 1087, + "truncated": false, + "block": 9, + "row": 5915 + }, + { + "path": "eyetracker/pupilCoreStimulus.m", + "sha256": "259de91608af99a4e710022f09cb20030b3461ce547ac65eb848ac7e2b9a2922", + "language": "MATLAB", + "lines": 199, + "truncated": false, + "block": 9, + "row": 5287 + }, + { + "path": "eyetracker/tittaAdvCalTest.m", + "sha256": "714f3654d19a31d6bb64d389bb51d7967b86515c66bcd6158ff0c31b4877b505", + "language": "MATLAB", + "lines": 388, + "truncated": false, + "block": 9, + "row": 5733 + }, + { + "path": "eyetracker/tittaAdvImageStimulus.m", + "sha256": "d8dd1e3152485b0341a0fec9e2541cb4b6e6d0cb8f825b8fbadd00eddf6aab14", + "language": "MATLAB", + "lines": 133, + "truncated": false, + "block": 9, + "row": 4989 + }, + { + "path": "eyetracker/tittaAdvMovieStimulus.m", + "sha256": "6f6473d7ff17a1f726c45735c3ef576d52449f084e0bb5a89903b67115fc59e5", + "language": "MATLAB", + "lines": 153, + "truncated": false, + "block": 9, + "row": 5031 + }, + { + "path": "eyetracker/tittaAdvancedController.m", + "sha256": "1128b623e8dc8b0cabf31ea66cd58af098dcd373a0492f2c230164f49aae7771", + "language": "MATLAB", + "lines": 1140, + "truncated": false, + "block": 9, + "row": 5957 + }, + { + "path": "eyetracker/tittaCalCallback.m", + "sha256": "fef09e801709bc66bfdbaae13f1c9e539dca8fedf92d7ee25253729ca8ece6a4", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3606 + }, + { + "path": "eyetracker/tittaCalStimulus.m", + "sha256": "afc01f87748f290e61233e523e8cf8ce75a502782eb7fcb462deaae600ca7c4d", + "language": "MATLAB", + "lines": 214, + "truncated": false, + "block": 9, + "row": 5360 + }, + { + "path": "eyetracker/tittaRewardProvider.m", + "sha256": "6f7f65604355beba8c84792c026d5cf19d06cc4eac432e2ae656a4739a1cc029", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 9, + "row": 4213 + }, + { + "path": "eyetracker/tobiiManager.m", + "sha256": "42921df507f2aa7947ed2e306af869e47359f8e232c3b900749f63fbaa57fe8e", + "language": "MATLAB", + "lines": 1222, + "truncated": false, + "block": 9, + "row": 5948 + }, + { + "path": "optickaBehaviourTest.m", + "sha256": "3e5bf926a9cf3f91bfae733c87d07d0ffb67460795a81f2925c22500b0d9e527", + "language": "MATLAB", + "lines": 178, + "truncated": false, + "block": 9, + "row": 5534 + }, + { + "path": "optickaRoot.m", + "sha256": "3b2bd689597088fad6e0b942bd54db40f12a146075acdee292cfb6b9e356c849", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2931 + }, + { + "path": "optickaTest.m", + "sha256": "b79f2a2af55dd47ccd23078cba31e60914a123f488d1e5e9c90698e3d78ae74a", + "language": "MATLAB", + "lines": 279, + "truncated": false, + "block": 9, + "row": 5634 + }, + { + "path": "setupOptickaCI.m", + "sha256": "b78d027ed23c2153a4ceb16f204ee5d4069fc466e3dc555de22a7e87bec40320", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 9, + "row": 4627 + }, + { + "path": "stimuli/CreateProceduralCheckerboard.m", + "sha256": "5c28f508031154de1eb05cfd91ebdc934f777359d6b837fcd082ae02cff562e7", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 3942 + }, + { + "path": "stimuli/CreateProceduralPolarBoard.m", + "sha256": "267c1d8cfc3dbb6685a3a1fba41c289dced1ebb0665c6502bffae6c20d1e0e0b", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 4346 + }, + { + "path": "stimuli/CreateProceduralPolarGrating.m", + "sha256": "85171f49f071d90e085f21aedfe2ac1434d60c6b7bfd5b3f1e38ecdd560bc9e1", + "language": "MATLAB", + "lines": 124, + "truncated": false, + "block": 9, + "row": 4940 + }, + { + "path": "stimuli/CreateProceduralPseudoYellowGrating.m", + "sha256": "49b79e10393b99244dacc782115958b7a7f7a8019b15ec3901a6ba5bfd339976", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 4451 + }, + { + "path": "stimuli/CreateProceduralSineSmoothedGrating.m", + "sha256": "f9b5f81e6dc12d6a9f63ce8caf7aa0de116179afe8df6daadc84df1bc1a2feb5", + "language": "MATLAB", + "lines": 148, + "truncated": false, + "block": 9, + "row": 5192 + }, + { + "path": "stimuli/CreateProceduralSineSquareGrating.m", + "sha256": "5abf8421e8c0d765ace99626fc3093ff4ecd3f3d8ba1b255aebb4e141bee4f2a", + "language": "MATLAB", + "lines": 125, + "truncated": false, + "block": 9, + "row": 5087 + }, + { + "path": "stimuli/CreateProceduralSmoothDisc.m", + "sha256": "34152d8859b86d8b336f78f2eb8745e10c2229c6028850c2414946b05d4250c1", + "language": "MATLAB", + "lines": 122, + "truncated": false, + "block": 9, + "row": 4952 + }, + { + "path": "stimuli/ProceduralPolarGratingDemo.m", + "sha256": "e4e5fdbb5cbfe079fad3da664a8507e9d46a9511df9bba0295b76b9c8c1bdec0", + "language": "MATLAB", + "lines": 181, + "truncated": false, + "block": 9, + "row": 5235 + }, + { + "path": "stimuli/animationManager.m", + "sha256": "eb4f3e59a3e941899949b296d66d7f49960ce731df37f5d1149bd7a40d783d03", + "language": "MATLAB", + "lines": 1066, + "truncated": false, + "block": 9, + "row": 5906 + }, + { + "path": "stimuli/apparentMotionStimulus.m", + "sha256": "31a501f0d71b28d68b32dc3350ebc269c7633d074a10bcb3f4b830caef68cc09", + "language": "MATLAB", + "lines": 400, + "truncated": false, + "block": 9, + "row": 5626 + }, + { + "path": "stimuli/aprilTagStimulus.m", + "sha256": "f2d3d1cbaf9c6df9d88ec7b95b8b9491e5bca10a29f47b755651b7bb82b02ec6", + "language": "MATLAB", + "lines": 422, + "truncated": false, + "block": 9, + "row": 5680 + }, + { + "path": "stimuli/audioManager.m", + "sha256": "a666bda04776ca24f3852d6f61bcf012b97375795644322d3b47ff97017ef10f", + "language": "MATLAB", + "lines": 480, + "truncated": false, + "block": 9, + "row": 5693 + }, + { + "path": "stimuli/barStimulus.m", + "sha256": "9aee57fab225ff15a2d9eb5cfea40194f06b7d29fbc912daba067250227ef4d3", + "language": "MATLAB", + "lines": 591, + "truncated": false, + "block": 9, + "row": 5794 + }, + { + "path": "stimuli/baseStimulus.m", + "sha256": "b35f3e509a819a74c3f67912f9e65ac788a1691411b9e5b4862425a03667677a", + "language": "MATLAB", + "lines": 1280, + "truncated": false, + "block": 9, + "row": 5947 + }, + { + "path": "stimuli/checkerboardStimulus.m", + "sha256": "ee3eab817c7dc5c3d1386c67f7247777c24e384df58ef5e27ab6f2d5f08e55a0", + "language": "MATLAB", + "lines": 472, + "truncated": false, + "block": 9, + "row": 5732 + }, + { + "path": "stimuli/colourGratingStimulus.m", + "sha256": "4691854b1dbe6cadafc32f7a35a0530aeebfe8a36711b32cf64530f096073ea6", + "language": "MATLAB", + "lines": 605, + "truncated": false, + "block": 9, + "row": 5816 + }, + { + "path": "stimuli/colourTest.m", + "sha256": "3d3749e520822fa6805619621e1409768c5693638b5eafae4ec0a824890c47e5", + "language": "MATLAB", + "lines": 371, + "truncated": false, + "block": 9, + "row": 5561 + }, + { + "path": "stimuli/discStimulus.m", + "sha256": "5c3cc681da608dac018ede3d96657523c1223bd97db547873b5ee62fc3604150", + "language": "MATLAB", + "lines": 440, + "truncated": false, + "block": 9, + "row": 5692 + }, + { + "path": "stimuli/doLogGabor.m", + "sha256": "05dd7167b22eacad5d8ac2f00d2804cd205056c1ffe234f8cdf5920ea89be1bf", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 9, + "row": 5105 + }, + { + "path": "stimuli/dotlineStimulus.m", + "sha256": "e1b706703043d008216f890fc02b0cf61043446102c7e2189af8f46f5c491881", + "language": "MATLAB", + "lines": 376, + "truncated": false, + "block": 9, + "row": 5635 + }, + { + "path": "stimuli/dotsStimulus.m", + "sha256": "5a043e4034f5076de5dbc6f518c2000284afaa86a6db772bdbf8cd6a380f3e60", + "language": "MATLAB", + "lines": 459, + "truncated": false, + "block": 9, + "row": 5713 + }, + { + "path": "stimuli/exampleStimulus.m", + "sha256": "89fa73d9a3b0b21dff86840feeaa21710a58149c24bde038fa2cb01fd3c25fff", + "language": "MATLAB", + "lines": 144, + "truncated": false, + "block": 9, + "row": 5050 + }, + { + "path": "stimuli/fixationCrossStimulus.m", + "sha256": "889fcf296063a907a1fb2e1d4c390e69b1f37e86e325394a431972b0a5d6c793", + "language": "MATLAB", + "lines": 395, + "truncated": false, + "block": 9, + "row": 5653 + }, + { + "path": "stimuli/gaborStimulus.m", + "sha256": "577683e14fe3d211aeda986f8c80f954fe931596a533702b876444ef79fc5896", + "language": "MATLAB", + "lines": 420, + "truncated": false, + "block": 9, + "row": 5677 + }, + { + "path": "stimuli/gratingStimulus.m", + "sha256": "f3f9bbdd2d0af63b200cf2c28452c42a0fc31216727615d23d27aa9d59c547e7", + "language": "MATLAB", + "lines": 499, + "truncated": false, + "block": 9, + "row": 5741 + }, + { + "path": "stimuli/imageStimulus.m", + "sha256": "977fe0d55ae030f32b6393f74a74b0fb3581b43ce8a3bfbcb6e3ddf9281a4bf3", + "language": "MATLAB", + "lines": 574, + "truncated": false, + "block": 9, + "row": 5773 + }, + { + "path": "stimuli/logGaborStimulus.m", + "sha256": "5730fef1ee396b94f99aeaddd0a9ebc444ed3ab269c68cba7219d61ac5fd9d1c", + "language": "MATLAB", + "lines": 532, + "truncated": false, + "block": 9, + "row": 5779 + }, + { + "path": "stimuli/metaStimulus.m", + "sha256": "98f51d802072378bd53371583451c15bbb49582bd2763449ee627b28564368f6", + "language": "MATLAB", + "lines": 797, + "truncated": false, + "block": 9, + "row": 5861 + }, + { + "path": "stimuli/movieStimulus.m", + "sha256": "0cf5d50d8ebd919e575a412b923c0fd9313ca351445726285b1bf9d4cbccd2b9", + "language": "MATLAB", + "lines": 625, + "truncated": false, + "block": 9, + "row": 5838 + }, + { + "path": "stimuli/ndotsStimulus.m", + "sha256": "537245dc491db678af32e232a13af4dbd7c508a428d422afb95c82e0ec99ba88", + "language": "MATLAB", + "lines": 479, + "truncated": false, + "block": 9, + "row": 5717 + }, + { + "path": "stimuli/perlin.m", + "sha256": "b0a8d76139f9e2ee01a02f03d52632475f33ebf2df6714f24a3eed7f01d02795", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3186 + }, + { + "path": "stimuli/plaidStimulus.m", + "sha256": "49da4b80ec8b555bc978e48272470c4f44c7b523a4166b9909458981c0dbe26b", + "language": "MATLAB", + "lines": 151, + "truncated": false, + "block": 9, + "row": 4855 + }, + { + "path": "stimuli/polarBoardStimulus.m", + "sha256": "0f12d7f96c4c5b21b1b60d974517331442b0b421c79ab06f406c2918eee7df08", + "language": "MATLAB", + "lines": 613, + "truncated": false, + "block": 9, + "row": 5820 + }, + { + "path": "stimuli/polarGratingStimulus.m", + "sha256": "5e4cbe6dec075a5fde95406ed2e2b0d3c6645f64072f5308f86499a13108df3a", + "language": "MATLAB", + "lines": 675, + "truncated": false, + "block": 9, + "row": 5844 + }, + { + "path": "stimuli/revCor.m", + "sha256": "86f5d97d1e05c0a757c4b80aa6ca29be441189e74dffc8d30ef296b2d904617e", + "language": "MATLAB", + "lines": 187, + "truncated": false, + "block": 9, + "row": 5204 + }, + { + "path": "stimuli/revcorStimulus.m", + "sha256": "bf96119661d1b9bf23275883c26633735e28d60f9553825765743c106998e22b", + "language": "MATLAB", + "lines": 343, + "truncated": false, + "block": 9, + "row": 5579 + }, + { + "path": "stimuli/rfMapper.m", + "sha256": "500557db6db4c2532f8bd863cb54e1712b0fe8f4b8b102366f74ff5c9b20763c", + "language": "MATLAB", + "lines": 685, + "truncated": false, + "block": 9, + "row": 5786 + }, + { + "path": "stimuli/spotStimulus.m", + "sha256": "4ec5d44eef8ee60b9d90e79efdd20df73062db712955acc02723e9291ed7ca3c", + "language": "MATLAB", + "lines": 357, + "truncated": false, + "block": 9, + "row": 5593 + }, + { + "path": "stimuli/targetInducerStimulus.m", + "sha256": "b0d7722b860e0430605a868e3e8ca319d24072565b6ddbb1d18f97a394c70c38", + "language": "MATLAB", + "lines": 433, + "truncated": false, + "block": 9, + "row": 5702 + }, + { + "path": "stimuli/timeTest.m", + "sha256": "d61097833a23c7d1785fe36075905cddf1b47e4995afc53887f82e78dc2b3055", + "language": "MATLAB", + "lines": 626, + "truncated": false, + "block": 9, + "row": 5848 + }, + { + "path": "tests/AlyxManagerTest.m", + "sha256": "bf2c83e843e27d170228cadd7ea40efd4b541a889b994a4e29c4c120ef1ec94f", + "language": "MATLAB", + "lines": 290, + "truncated": false, + "block": 9, + "row": 5550 + }, + { + "path": "tests/AnimationManagerTest.m", + "sha256": "173d1a22e467b0411e3368dd9ef77405b488f6291d2f05660f190e37733478ac", + "language": "MATLAB", + "lines": 249, + "truncated": false, + "block": 9, + "row": 5511 + }, + { + "path": "tests/AprilTagStimulusTest.m", + "sha256": "235089b82bda1d2c39d98aa3b80fb1f21fe49054bd45f95a8a3f43504a4a5cec", + "language": "MATLAB", + "lines": 397, + "truncated": false, + "block": 9, + "row": 5728 + }, + { + "path": "tests/AudioManagerTest.m", + "sha256": "161f71723230895ddb23f95d78afd3170e5352f7e8ed29ce3150f455c2efa3ca", + "language": "MATLAB", + "lines": 174, + "truncated": false, + "block": 9, + "row": 5402 + }, + { + "path": "tests/BarStimulusTest.m", + "sha256": "cc293a9cea37f2845f4572011bb8db20604e131987c454022ad0c94e75ab3ccd", + "language": "MATLAB", + "lines": 183, + "truncated": false, + "block": 9, + "row": 5337 + }, + { + "path": "tests/BaseStimulusTest.m", + "sha256": "7dad43e5189339e1110fab5691469634e50f1e2cb6989ecc80d189ac32df63bc", + "language": "MATLAB", + "lines": 262, + "truncated": false, + "block": 9, + "row": 5521 + }, + { + "path": "tests/CheckerboardStimulusTest.m", + "sha256": "bebf84dd45a40f4de821e9e31d2be0921f44ff14d1aac1cb93749186900044a6", + "language": "MATLAB", + "lines": 300, + "truncated": false, + "block": 9, + "row": 5594 + }, + { + "path": "tests/ColourGratingStimulusTest.m", + "sha256": "0a452dd177381415da09dabb44b18c2ebfe33a8cecfedc28eb5a45e5ee31a7cf", + "language": "MATLAB", + "lines": 315, + "truncated": false, + "block": 9, + "row": 5618 + }, + { + "path": "tests/DiscStimulusTest.m", + "sha256": "faf87210fe2c979b42e7fa9fd464e11057306e73d5192eb0712aae721491fbb1", + "language": "MATLAB", + "lines": 190, + "truncated": false, + "block": 9, + "row": 5361 + }, + { + "path": "tests/DotlineStimulusTest.m", + "sha256": "09886a78dbb436e8c4a4564608af1abcb184ce30df13a48a85ec8f6b4b19b6ce", + "language": "MATLAB", + "lines": 318, + "truncated": false, + "block": 9, + "row": 5646 + }, + { + "path": "tests/DotsStimulusTest.m", + "sha256": "d769c419b546924bcbfc760a34b85de49935b029abd05e98d2c6e616a1c48ea0", + "language": "MATLAB", + "lines": 310, + "truncated": false, + "block": 9, + "row": 5589 + }, + { + "path": "tests/EyetrackerCoreTest.m", + "sha256": "c01eae78e03eafe6a21c9c6c741916777ad1c4995c4e32bd83ed98577d317b5d", + "language": "MATLAB", + "lines": 594, + "truncated": false, + "block": 9, + "row": 5881 + }, + { + "path": "tests/FixationCrossStimulusTest.m", + "sha256": "4e2465abee330c1b60407d10433f49a78e39100b9658800a1c2992434cdf345c", + "language": "MATLAB", + "lines": 305, + "truncated": false, + "block": 9, + "row": 5622 + }, + { + "path": "tests/GaborStimulusTest.m", + "sha256": "74e34480f71b7e71437102875990a628d136d304481c4ad2f12936d14d0300c0", + "language": "MATLAB", + "lines": 307, + "truncated": false, + "block": 9, + "row": 5614 + }, + { + "path": "tests/GratingStimulusTest.m", + "sha256": "b83ff3762e550133f815750636a701efc16493292f654a4a9dd4e8771e320d84", + "language": "MATLAB", + "lines": 217, + "truncated": false, + "block": 9, + "row": 5460 + }, + { + "path": "tests/HSMBenchmarkTest.m", + "sha256": "66ec3546a3b7f4bd7bdce720e36eecc358dccab2b48827f919b256af5563dae4", + "language": "MATLAB", + "lines": 277, + "truncated": false, + "block": 9, + "row": 5571 + }, + { + "path": "tests/HSMCompareTest.m", + "sha256": "e6b16ed92f84b1db2bd101cce0fa567a32485ca6d6ee94037b40d98ed8a60a8a", + "language": "MATLAB", + "lines": 215, + "truncated": false, + "block": 9, + "row": 5542 + }, + { + "path": "tests/HSMOption1Test.m", + "sha256": "0be98063c4bbed04a0808f4ad072ce962236acb06808a7c538140c48541a1ff4", + "language": "MATLAB", + "lines": 232, + "truncated": false, + "block": 9, + "row": 5597 + }, + { + "path": "tests/HSMOption2Test.m", + "sha256": "26692364a422e083e3ae6459d8e80562f74165ec92459b94de930270e95a6fc2", + "language": "MATLAB", + "lines": 273, + "truncated": false, + "block": 9, + "row": 5665 + }, + { + "path": "tests/ImageStimulusTest.m", + "sha256": "927c33b1cb454812405ab02d01505bc96eb6be2157936e508c302422ea122e75", + "language": "MATLAB", + "lines": 446, + "truncated": false, + "block": 9, + "row": 5776 + }, + { + "path": "tests/JzmqConnectionTest.m", + "sha256": "4e961c16147630113b527ffd097e046be7b5d83ae288ebfffda85debf30a0638", + "language": "MATLAB", + "lines": 635, + "truncated": false, + "block": 9, + "row": 5798 + }, + { + "path": "tests/JzmqCrossProcessTest.m", + "sha256": "4f3e3b68696a7f2be718b64bda5f5a4cc7f085cbe40eb022d56db39d0bec9ea3", + "language": "MATLAB", + "lines": 251, + "truncated": false, + "block": 9, + "row": 5450 + }, + { + "path": "tests/LogGaborStimulusTest.m", + "sha256": "36d55a0f6533b3404c8ac5e15b7ba6e16ba4ed97d477311156535a7d56aa5ac0", + "language": "MATLAB", + "lines": 300, + "truncated": false, + "block": 9, + "row": 5585 + }, + { + "path": "tests/MetaStimulusTest.m", + "sha256": "4ae5fe18eada967afbe89d3e0f9f644ee5659d22954e437098e1dd15183924f4", + "language": "MATLAB", + "lines": 237, + "truncated": false, + "block": 9, + "row": 5468 + }, + { + "path": "tests/MovieStimulusTest.m", + "sha256": "de962202b3247727fb18015bfe93849d430dc0b8b3dc5272cf66c24a1628780c", + "language": "MATLAB", + "lines": 410, + "truncated": false, + "block": 9, + "row": 5727 + }, + { + "path": "tests/NDotsStimulusTest.m", + "sha256": "0e1109eb567398142618eb26e1fa8e48f8dd2c4055bfe87c08ecba8dc9cd40d8", + "language": "MATLAB", + "lines": 291, + "truncated": false, + "block": 9, + "row": 5588 + }, + { + "path": "tests/OptickaGUITest.m", + "sha256": "6326b3b401be35ee981e695753dea17f292bb3f63e0b386d8f819570bd4b3c44", + "language": "MATLAB", + "lines": 165, + "truncated": false, + "block": 9, + "row": 5276 + }, + { + "path": "tests/PolarBoardStimulusTest.m", + "sha256": "0a9a5f35cb3b8202acdbfcb090d9355085b5caf2a55c51dbf8012222c1ec9f11", + "language": "MATLAB", + "lines": 315, + "truncated": false, + "block": 9, + "row": 5632 + }, + { + "path": "tests/PolarGratingStimulusTest.m", + "sha256": "ec87146ee782d4a3ece2c5b4623f803025d323715f50376e3e2d49c4866c5ea9", + "language": "MATLAB", + "lines": 324, + "truncated": false, + "block": 9, + "row": 5672 + }, + { + "path": "tests/RevcorStimulusTest.m", + "sha256": "8cd4ec160b516d569539d38bfaa6f985622c1eb1425796f92a0dbc2be6708241", + "language": "MATLAB", + "lines": 264, + "truncated": false, + "block": 9, + "row": 5545 + }, + { + "path": "tests/RunExperimentTest.m", + "sha256": "dd7b985dff46036da8193cb3aded7469fdcc31320efc0922c79ac8ad62b941b7", + "language": "MATLAB", + "lines": 491, + "truncated": false, + "block": 9, + "row": 5746 + }, + { + "path": "tests/ScreenManagerTest.m", + "sha256": "8cd6375c721b34bef33f93f74f274f6c3b20f457564c904725e06f9a1897d940", + "language": "MATLAB", + "lines": 924, + "truncated": false, + "block": 9, + "row": 5918 + }, + { + "path": "tests/SpotStimulusTest.m", + "sha256": "6cacb24c7d9f8c8becd87e1334ae429634742d8e3159cf4d299bc7f07c24c21e", + "language": "MATLAB", + "lines": 282, + "truncated": false, + "block": 9, + "row": 5540 + }, + { + "path": "tests/StateNodeTest.m", + "sha256": "a8a187a6ffbe4ad5fd7861846763c9eff891fe2caf57eba824ecdc53aa443789", + "language": "MATLAB", + "lines": 428, + "truncated": false, + "block": 9, + "row": 5735 + }, + { + "path": "tests/TaskSequenceTest.m", + "sha256": "0788215ddf7a5d1e03423748513b24af226de3481782e82d5d3d324064fef815", + "language": "MATLAB", + "lines": 408, + "truncated": false, + "block": 9, + "row": 5731 + }, + { + "path": "tests/TimeLoggerTest.m", + "sha256": "165061b4d0dcefe56756ef5b8a7392c79602ce43c5c551a8aea11695f6b79185", + "language": "MATLAB", + "lines": 305, + "truncated": false, + "block": 9, + "row": 5612 + }, + { + "path": "tests/TouchManagerTest.m", + "sha256": "1d0c36a47c5a0ae586e5ea517465ad2dd7449416cba48b593c0309f87c5200da", + "language": "MATLAB", + "lines": 621, + "truncated": false, + "block": 9, + "row": 5885 + }, + { + "path": "tests/alyxManagerHarness.m", + "sha256": "1c0e683efda458ebbf5a056c031236065e29cb3a139dea22be46c25b9b2b6bc0", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 9, + "row": 4427 + }, + { + "path": "tests/jzmqBatchServer.m", + "sha256": "01cfb38239a986fbffe0108139c4ce61d99d36e4c98ca10a77563a2ab0b8abc0", + "language": "MATLAB", + "lines": 107, + "truncated": false, + "block": 9, + "row": 4719 + }, + { + "path": "tests/runOptickaTests.m", + "sha256": "dc01fcb37ee3c469a5659ec809091605286d52eee3c5d5e1bcd26891d4107813", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 9, + "row": 4919 + }, + { + "path": "tests/runOptickaTestsXvfb.sh", + "sha256": "08235632b4636e68ae9a52872a02826492a922de1801215636bdae68ce9e42e7", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 9, + "row": 14006 + }, + { + "path": "tests/stateMachineHSM.m", + "sha256": "1dcab45e7f39c7662a2347f36b755572ac4af3ea335b9c8c283a577c5383daff", + "language": "MATLAB", + "lines": 549, + "truncated": false, + "block": 9, + "row": 5814 + }, + { + "path": "tools/SplashScreen.m", + "sha256": "e6a8620b5b7e7027b368b6daf0e1434a339706ddf596160ee56041a0cc8cf211", + "language": "MATLAB", + "lines": 493, + "truncated": false, + "block": 9, + "row": 5760 + }, + { + "path": "tools/afterimagetest.m", + "sha256": "62d12e7f7433921f55a17c9e987ce34683195fccda07cdadccc11df9759130f6", + "language": "MATLAB", + "lines": 198, + "truncated": false, + "block": 9, + "row": 5008 + }, + { + "path": "tools/alyxUploader.m", + "sha256": "b652753d34b3fded0dfe4266c33317fbba0440e9608379fcc7bb9134f9f44e19", + "language": "MATLAB", + "lines": 1094, + "truncated": false, + "block": 9, + "row": 5936 + }, + { + "path": "tools/assessCounterbalancing.m", + "sha256": "a1825b53b159a498be1fbed158b6440f46fa1dcedc19f020a62942e09a56b73c", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 9, + "row": 3139 + }, + { + "path": "tools/carryoverCounterbalance.m", + "sha256": "6c578fd78188b0b1c0caec8ffe160ee0e23ebbdb99dfef9751aa3ce1bedf8462", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3499 + }, + { + "path": "tools/dirPlus.m", + "sha256": "3a5e2ab293cb41d8c7d5646470dfa9303d7c6ef0bb430c762c09212c47d3a045", + "language": "MATLAB", + "lines": 318, + "truncated": false, + "block": 9, + "row": 5600 + }, + { + "path": "tools/lfpCursor.m", + "sha256": "3c237d8e94d990f39eb9ed8f261e25aa69a6acd7546e46e836551a97afba7cc5", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3233 + }, + { + "path": "tools/m2cpp.pl", + "sha256": "0496345c2f917c41e67b25c6937fbdb67b1a8cc9ed5c93502d4e097e0b03837a", + "language": "Perl", + "lines": 267, + "truncated": false, + "block": 9, + "row": 6064 + }, + { + "path": "tools/motiontest.m", + "sha256": "1b54fe75efd74d80fda67bdd68e0f8bee4e798d8207df94fe717d604c0590020", + "language": "MATLAB", + "lines": 125, + "truncated": false, + "block": 9, + "row": 4857 + }, + { + "path": "tools/passwordUI.m", + "sha256": "4d4ac7364e36a718b1b00e8fbdd80d92fbecbc34edc424f7bb2f9d6e18308362", + "language": "MATLAB", + "lines": 220, + "truncated": false, + "block": 9, + "row": 5403 + }, + { + "path": "tools/runDeployed.m", + "sha256": "779137b27b33202708891c6479d8802179c5510932729d90c39a3c6bcbf33225", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3539 + }, + { + "path": "tools/staircaseManager.m", + "sha256": "9a46b25fb1f68550e022d09bbf121b3df8d22b2d1172f10a1e5bdf47f1e8e023", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 9, + "row": 4701 + }, + { + "path": "tools/stimulusSequence.m", + "sha256": "bea285cc576cd11f206d0e0b954109601a92a92ebdac45f379c58051e056d5fb", + "language": "MATLAB", + "lines": 825, + "truncated": false, + "block": 9, + "row": 5873 + }, + { + "path": "tools/testptb.m", + "sha256": "f80748f93208aa30aa2936ca5f726980f06af183667c7d754af6e0da6f27249c", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 4042 + }, + { + "path": "tools/uiinspect.m", + "sha256": "5b9b0fc4ea376b0d6f158aa15037bd05f753283979ca0aa127eb3330e44a098e", + "language": "MATLAB", + "lines": 3002, + "truncated": false, + "block": 9, + "row": 6017 + }, + { + "path": "ui/CompactEditableComboBox.m", + "sha256": "f89c7e64a855353067da44e142b20fed730bc35f9fcd0b07b3699b56e71312e8", + "language": "MATLAB", + "lines": 659, + "truncated": false, + "block": 9, + "row": 5842 + }, + { + "path": "ui/CompactEditableComboBoxEventData.m", + "sha256": "3ee381338a39b465a19a5c740fca6022094d9f9ce616b6ef03c91d70040748f8", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3865 + }, + { + "path": "ui/demoCompactEditableComboBox.m", + "sha256": "0eef66117992b01cfcafe0902f3477487d1e24fd8902b96da01b8abb822c42b4", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 4099 + }, + { + "path": "ui/figpos.m", + "sha256": "bd31736de10d131f821c3eb5efcc8fcf5250b9b28bc5d481244a0a18c34db545", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 4140 + }, + { + "path": "ui/menuN.m", + "sha256": "129821016f4506fe5332dab38620c2f5d5e934804b9b2d53c47690ebbbba47dc", + "language": "MATLAB", + "lines": 688, + "truncated": false, + "block": 9, + "row": 5799 + }, + { + "path": "ui/opticka.m", + "sha256": "45211769a35904d53089f467548be14c304e3b7cacdddc1e512f11e192d3671d", + "language": "MATLAB", + "lines": 2105, + "truncated": false, + "block": 9, + "row": 5997 + }, + { + "path": "ui/panel.m", + "sha256": "c411a605d1dca02e29dd26bffde8e99bb8e729b7c5fd5f716d6e39fbd9144f32", + "language": "MATLAB", + "lines": 5201, + "truncated": false, + "block": 9, + "row": 6018 + }, + { + "path": "ui/seditor.m", + "sha256": "872ed9b686b8a9c8935200290e22debc606f4057035c52ef6fe1c683297290da", + "language": "MATLAB", + "lines": 222, + "truncated": false, + "block": 9, + "row": 5331 + }, + { + "path": "ui/textprogressbar.m", + "sha256": "0bb4e39ba0d41b7b9c2f7aa7c173fbddd4def2617048593f52f33f8acf531372", + "language": "MATLAB", + "lines": 301, + "truncated": false, + "block": 9, + "row": 5504 + } + ] +} \ No newline at end of file diff --git a/manifests/40/github.com__caseypaquola__cortpro.json b/manifests/40/github.com__caseypaquola__cortpro.json new file mode 100644 index 0000000000000000000000000000000000000000..7f75c4956a9836d23a4e6994189834d26cf82cda --- /dev/null +++ b/manifests/40/github.com__caseypaquola__cortpro.json @@ -0,0 +1,192 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/caseypaquola/cortpro", + "url": "https://github.com/caseypaquola/CortPro", + "host": "github.com", + "commit": "38d4148ec04bc4fab48cdf9fc1e3ec86324e0b66", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "c005c03f9eec4a765baaa8d5e6e5b1ca453d17d800ebdae32897265b1fc8c195", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2798 + }, + { + "path": "README.md", + "sha256": "fe4c82e4816753f4a51253e6e05c56545a276859cbb63ddb3f0c842c363acd73", + "language": "Text", + "lines": 105, + "truncated": false, + "block": 9, + "row": 14643 + }, + { + "path": "docs/bigbrainwarplexer.py", + "sha256": "7a2764355b583225a39ff812d210fc44951e6b75790bbf8e4c276bfd25aaaa97", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 8169 + }, + { + "path": "docs/conf.py", + "sha256": "639125eb71d094bd698b9f469f71a674be341d5c37af0f1f253066158f3304c5", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 9, + "row": 8665 + }, + { + "path": "docs/micapipelexer.py", + "sha256": "515db2698017a559236c89464ba5e6d20e73e04d5c9964718deb0862b177909c", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 8164 + }, + { + "path": "docs/source/.ipynb_checkpoints/Untitled-checkpoint.ipynb", + "sha256": "01ba4719c80b6fe911b091a7c05124b64eeece964e09c058ef8f9805daca546b", + "language": "Jupyter", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4956 + }, + { + "path": "functions/anatomical_average.sh", + "sha256": "c2a4a1bed3ef3629010ecfbba446335508caea0208a3402cc9c0130a940addfa", + "language": "Shell", + "lines": 74, + "truncated": false, + "block": 9, + "row": 14312 + }, + { + "path": "functions/collate_MP.py", + "sha256": "a494c1f6f42ca3cb0bdbec7207815d3dc7eaca27c0836a1a287983493ecbdec7", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 8949 + }, + { + "path": "functions/collate_SNR.py", + "sha256": "5ced5e60db7b331d894cd5c8a18d85bd7603fbd13ec711efe96e8de349c49024", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 8068 + }, + { + "path": "functions/compute_snr.sh", + "sha256": "f1e858a83c6e192fc14badff65e5e6de9bff60f50b6c92584e6f2597543efdd8", + "language": "Shell", + "lines": 95, + "truncated": false, + "block": 9, + "row": 14307 + }, + { + "path": "functions/compute_t1t2_ratio.sh", + "sha256": "f2b2deb083fde0b56f4cc2bd7970223082c830df12a255a91037a7758bb10db7", + "language": "Shell", + "lines": 58, + "truncated": false, + "block": 9, + "row": 14245 + }, + { + "path": "functions/compute_t1t2_ratio_predefined.sh", + "sha256": "d818c606ce9a5a2ee83ee0fbd9ca930a90d5f676f393a32c0cb4bc02685955dc", + "language": "Shell", + "lines": 59, + "truncated": false, + "block": 9, + "row": 14236 + }, + { + "path": "functions/coregister_micro.sh", + "sha256": "e539b5125f7699d3edb37aa60d7e711ae8fe5a7a8fe8a96bd62a2ae6fe8bf9c7", + "language": "Shell", + "lines": 39, + "truncated": false, + "block": 9, + "row": 14223 + }, + { + "path": "functions/evaluate_moment_correlations.py", + "sha256": "8d19907e85f9169953f86574ad4a427de69316b0f27d912b65b840d0bfe5af67", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 9, + "row": 8955 + }, + { + "path": "functions/generate_equivolumetric_surfaces.py", + "sha256": "e7486d92b1e003fc0fa45ce4f5f0dd562899282233d8e615e29fb0157fb01ae0", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 9, + "row": 9600 + }, + { + "path": "functions/io_mesh.py", + "sha256": "b70781272e087fdeb510b6f4b6ad33a6c134770cf81931c6f43efe2c03dc740b", + "language": "Python", + "lines": 430, + "truncated": false, + "block": 9, + "row": 11735 + }, + { + "path": "functions/qc_registration.sh", + "sha256": "1758a205d59cdea5eac0c66be9a6829118c8b66e20933701339e777b28ea4863", + "language": "Shell", + "lines": 39, + "truncated": false, + "block": 9, + "row": 14195 + }, + { + "path": "functions/run_fastsurfer.sh", + "sha256": "bf866f95f3941cc026b6d19f31c9dad8f4ba7ad22c9f7bcf518be5309ed1d7bc", + "language": "Shell", + "lines": 74, + "truncated": false, + "block": 9, + "row": 14262 + }, + { + "path": "functions/transform_fsaverage_to_fslr.py", + "sha256": "8b0a497ba009c2c0b8937ba3b686d094af9b15016fdc108add0e6c76f0dc3d3f", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 7952 + }, + { + "path": "microstructure_profiling.sh", + "sha256": "db1af7babee4ed9796eeb92dcfccb12e3d7035ff0f359481920d762a46235700", + "language": "Shell", + "lines": 403, + "truncated": false, + "block": 9, + "row": 14412 + } + ] +} \ No newline at end of file diff --git a/manifests/40/zenodo__10799382.json b/manifests/40/zenodo__10799382.json new file mode 100644 index 0000000000000000000000000000000000000000..44bfbcb6f796ad5c8de4768d7acb6eafc2b5178c --- /dev/null +++ b/manifests/40/zenodo__10799382.json @@ -0,0 +1,138 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:10799382", + "url": "https://zenodo.org/doi/10.5281/zenodo.10799382", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "55c61e624fe1617d83bb68f1e89ab276f68599111d1c59907227830f298c1fad", + "language": "Text", + "lines": 31, + "truncated": false, + "block": 9, + "row": 14515 + }, + { + "path": "brain_FA.age_slope.primate.R", + "sha256": "79f735ca15cef2193fb76b4d771c1422aa7903fc967b78f4a2fb4955facc13cb", + "language": "R", + "lines": 101, + "truncated": false, + "block": 9, + "row": 13164 + }, + { + "path": "brain_FA.factorAdjusted.R", + "sha256": "6f303cbcc146764ac7055cfbd84792e90f6aa9ed83a23663c9cf93d6302ea4b5", + "language": "R", + "lines": 89, + "truncated": false, + "block": 9, + "row": 13105 + }, + { + "path": "brain_FA.mds.age.R", + "sha256": "d48ec6c1ff230a16715ea315a9b22adb9e65dc500aa6a9841d7c1b3ad5e021f4", + "language": "R", + "lines": 80, + "truncated": false, + "block": 9, + "row": 13278 + }, + { + "path": "brain_FA.percentage_bar.R", + "sha256": "9ca9069a4f757762f7a42288add861f67c722d97a58a5480150d0076f959c74d", + "language": "R", + "lines": 92, + "truncated": false, + "block": 9, + "row": 13255 + }, + { + "path": "brain_FA.specific.R", + "sha256": "3da19ff03b2249a92f0074819f908837a8c0d8548ca9b16a95a12651664b59dc", + "language": "R", + "lines": 171, + "truncated": false, + "block": 9, + "row": 13452 + }, + { + "path": "brain_milk_FA.speciesIntensityCorrelation.R", + "sha256": "e96cb3e8cf4cefa5a6065f5f1fcc36f767bcb32f1d581593799516746f611414", + "language": "R", + "lines": 60, + "truncated": false, + "block": 9, + "row": 13030 + }, + { + "path": "brain_milk_FA.species_FC.R", + "sha256": "01004b3ff103991c8573cf9e1d786b5b592ad79f72c096b5907124fd2a4e3770", + "language": "R", + "lines": 90, + "truncated": false, + "block": 9, + "row": 13155 + }, + { + "path": "brain_milk_FA.species_FC_LS_correlation.R", + "sha256": "25a7c1c7f63d13fc6633be246f5ae7636ef6d31284022b67fe32460b8d633b39", + "language": "R", + "lines": 74, + "truncated": false, + "block": 9, + "row": 13071 + }, + { + "path": "data_normalize.R", + "sha256": "82195dacb31d05360a2b1d0bab3052eedfc206a6d4870c7a969c110aa96d9765", + "language": "R", + "lines": 30, + "truncated": false, + "block": 9, + "row": 12803 + }, + { + "path": "milk_FA.LS22_40.lmAdjustedNoPopulation.R", + "sha256": "ce85c4b9ce0abb604ff370fd34b3d81d09d774ec012691e001a1e0939eed7972", + "language": "R", + "lines": 97, + "truncated": false, + "block": 9, + "row": 13184 + }, + { + "path": "milk_FA.mds.R", + "sha256": "c3744858bee607cdc361e3c5681a887c2452d1504b7da56c39df4ece25493737", + "language": "R", + "lines": 68, + "truncated": false, + "block": 9, + "row": 13151 + }, + { + "path": "milk_FA.percentage_bar.species.R", + "sha256": "bef05e9bdeb29e2b0883eb0a60c6588dba4d522854cc7af73a7287dfe8ca83f7", + "language": "R", + "lines": 68, + "truncated": false, + "block": 9, + "row": 13156 + }, + { + "path": "milk_FA.specific.R", + "sha256": "a2aea7a0e232383f733dd842e7cedc17f4bbe13b3aae55954740971507113aaa", + "language": "R", + "lines": 174, + "truncated": false, + "block": 9, + "row": 13404 + } + ] +} \ No newline at end of file diff --git a/manifests/41/figshare__3847086.json b/manifests/41/figshare__3847086.json new file mode 100644 index 0000000000000000000000000000000000000000..91879f099acab568da8d58f9614819f76e92584e --- /dev/null +++ b/manifests/41/figshare__3847086.json @@ -0,0 +1,21 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "figshare:3847086", + "url": "https://figshare.com/articles/dataset/Phase_Transfer_Entropy/3847086?file=8682508", + "host": "figshare.com", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "PhaseTE_MF.m", + "sha256": "9c52e136e51e1d3a66916dc5833c82749b3b74c4eb68e54527bb80b0798b19b9", + "language": "MATLAB", + "lines": 144, + "truncated": false, + "block": 9, + "row": 5055 + } + ] +} \ No newline at end of file diff --git a/manifests/43/github.com__drrdom__rdkit-scripts.json b/manifests/43/github.com__drrdom__rdkit-scripts.json new file mode 100644 index 0000000000000000000000000000000000000000..64dd4c20c9c0a4ecf9627fdeab0283ce327e6488 --- /dev/null +++ b/manifests/43/github.com__drrdom__rdkit-scripts.json @@ -0,0 +1,561 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/drrdom/rdkit-scripts", + "url": "https://github.com/DrrDom/rdkit-scripts", + "host": "github.com", + "commit": "8def35b643ccc6b8cd9bb8913dde1bb6a807d076", + "license": "MIT", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.txt", + "sha256": "bd4439e79b4818e474540a09c01418f74f8dfff6f9289cfd59978e6cd3f8026c", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2825 + }, + { + "path": "README.md", + "sha256": "1c618c0d11b145a4d43a284f06552af50696574654bdcc43ee3bb9a66f5b3de1", + "language": "Text", + "lines": 90, + "truncated": false, + "block": 9, + "row": 14703 + }, + { + "path": "_template.py", + "sha256": "d420273b6d2a943a5155b168902bfa4538f83dfb942470837bc030512732dbec", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7262 + }, + { + "path": "add_h.py", + "sha256": "8667793d6f567b5ce55a24e260675bb4b1ec0583b9ee410e3a0b97cca35c9f83", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7216 + }, + { + "path": "add_prefix.py", + "sha256": "455bca0a87d84ecee52c9766f3e6aa7cd5e24a720aec022f93c11073307a6e46", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7360 + }, + { + "path": "binning.py", + "sha256": "4a14e225f4904d2b1a3151161618776993dab55a83c9972a9b8693e24d04ab90", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 8020 + }, + { + "path": "calc_center_rdkit.py", + "sha256": "38f30d54922ad835e085639d35b49b14b2ad905f32477f162b61407d485b386a", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 9, + "row": 8946 + }, + { + "path": "cansmi.py", + "sha256": "254a41740c17887f41a86e0f63490ae9b9f27c7dce9b0cddfd784aa119ec4a7a", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 8245 + }, + { + "path": "clust_scaffolds.py", + "sha256": "6e07a4fb5c9bc7764d222c54eaa9bec68aab9e59865f1b1fe6e9e609621c799e", + "language": "Python", + "lines": 211, + "truncated": false, + "block": 9, + "row": 10167 + }, + { + "path": "compare_charged_centers.py", + "sha256": "cb6bee7f94d95a3a822d75523f52fb8cdef68aff81533193d88bd86592073fd2", + "language": "Python", + "lines": 154, + "truncated": false, + "block": 9, + "row": 9606 + }, + { + "path": "count_undefined_stereocenters.py", + "sha256": "9c4a048f10ec075391c1666beb4a24f42f6159a04773dca15b56679de99151b9", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7519 + }, + { + "path": "descriptors.py", + "sha256": "2b0b8d45bfcb57f0018898de3712ef79fa6fa33aef60ad2751c7a4f99cf39342", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7958 + }, + { + "path": "discard_compounds_rdkit.py", + "sha256": "cc022aaed16693d82da142135b8c09748bc2d8de51181c842190c8504d6cc3cd", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 8829 + }, + { + "path": "discard_radicals.py", + "sha256": "0121d4cb37df8bbd4b30218231899188edc937c0a6741c2abab845c72e6378fb", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8654 + }, + { + "path": "draw_mols.py", + "sha256": "f2774d57d3123921e8d6bc9035233dbe29dde509b4f69a7e3479068dfe6ceb63", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 9, + "row": 9041 + }, + { + "path": "extract_mol_by_name.py", + "sha256": "ab283de78c03bedd4e821adf97d16ab6f8420e2ac0d0f1da4f694063c0b1fd22", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7927 + }, + { + "path": "extractsdf.py", + "sha256": "d6d4788ff4df61dce8110aeab92e0ced9548583b7597bd2c649b38f06aec88ca", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 9118 + }, + { + "path": "filter_conf.py", + "sha256": "a09d938ce1abdaef03be1b2d49058cd25b309bc3a25582a85e4cf7ebcd4996ba", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8565 + }, + { + "path": "filter_conf_adv.py", + "sha256": "ce5c9f9edebf37488fea73b70639458a1bd5618f28413286b8e574e2d9cbb6cb", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 9, + "row": 9717 + }, + { + "path": "filter_mols.py", + "sha256": "3b9c4b7c71836cb9f46ff22e7cba6faf8677a56b953d4610956ba1a88fcb78a8", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7861 + }, + { + "path": "filter_organic.py", + "sha256": "084863dbe042c927856a49603af75aebd4d99674cff7751ecb9c21a648fa0400", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8725 + }, + { + "path": "frags2mols.py", + "sha256": "5e97f91b6103ea3d0a7f41058c8aba1abeb3761fb51bcfd7c268f0dbfea5be3b", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 8064 + }, + { + "path": "gen_conf_rdkit.py", + "sha256": "8aa8eb46d3af0ed86a17420eb865f0f654547a2e42525193310cd977bff3c101", + "language": "Python", + "lines": 256, + "truncated": false, + "block": 9, + "row": 10949 + }, + { + "path": "gen_stereo_rdkit.py", + "sha256": "c4d6090067942cd442a4ca27246bc514dc697be571208a244a617d0c43327891", + "language": "Python", + "lines": 258, + "truncated": false, + "block": 9, + "row": 11021 + }, + { + "path": "gen_stereo_rdkit_native.py", + "sha256": "2dc4aa0d090cf6fa16fa14fcc3872cbb01d208b111c44e05d1d581ec4b3bf1a1", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 8970 + }, + { + "path": "get_contact_scaffold.py", + "sha256": "d504a1bb12ad35552d9191fd9afa12162cc32f0abe671a2dd17391513fa72383", + "language": "Python", + "lines": 449, + "truncated": false, + "block": 9, + "row": 11354 + }, + { + "path": "get_map.py", + "sha256": "65480468121cee0a57de57cc016ef3aacdfd3768315b36fe69dc535d59705fc5", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8755 + }, + { + "path": "get_mol_center.py", + "sha256": "f6cc21692e6e980740b31cfddeb206b751eff8615b771f7a1457add0b37e56da", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 9, + "row": 7110 + }, + { + "path": "get_substr.py", + "sha256": "67c90ce5e3e3f133301ea371c09e4c3512b54dfa533e3979bf2ee4a5268df7a1", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9550 + }, + { + "path": "get_total_charge.py", + "sha256": "bb044b31d0c97c5d6c7b63659da18c2d6c872f6ea76f92f2f2efc8b81a7933d1", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 7357 + }, + { + "path": "insert_sdf.py", + "sha256": "ebafdf4dc75f4aab7aab25e3a9e284bb0b41e6dff04c51b28b0206bb7bb140cf", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 8450 + }, + { + "path": "keep_largest.py", + "sha256": "5c8eec59797366eaf6dad321c734ad614025b39417ffcd39525bda232c7e69cb", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8429 + }, + { + "path": "mirror_mols.py", + "sha256": "54c549c3d335d82d242a6a0ea448a881167a403ec5fdcc551db6c1de54bed66f", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7443 + }, + { + "path": "molchemaxon2pdb.py", + "sha256": "2484622a96805dc5825215bee3aec71ae92ab82103b0b2872ce178ca7829dc96", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 10070 + }, + { + "path": "mols2pdb.py", + "sha256": "07d51313b3eb0d8448232c5ceb9ba735e57209a07239ec8f212935538e751eb7", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 8334 + }, + { + "path": "mols2sdf.py", + "sha256": "023211dd395bdc5843fe4d23a442d1cdb63bca670c195c0ae7fbbe34cfcf6fc3", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7524 + }, + { + "path": "murcko.py", + "sha256": "5ef5d706bcf7710361d96cf82cdcc2f745aa36b3af21cbbaf823333b3d51303e", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8770 + }, + { + "path": "mw_hac_mp.py", + "sha256": "6cd83c832ca80dc4266622b04b8690004960f0873e04fe1c3d2aff76f08815a6", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 9, + "row": 6916 + }, + { + "path": "neutralize.py", + "sha256": "2d5e444e138b12af618aaee7edefee4f6e4f75d2aaf276442b53e2d4fcf1a8f3", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 8440 + }, + { + "path": "physchem_calc.py", + "sha256": "040f5252a25472bad9c85d5c3afe0da32023fbc63c609593613e5ec5339c2cab", + "language": "Python", + "lines": 163, + "truncated": false, + "block": 9, + "row": 10444 + }, + { + "path": "pkl2sdf.py", + "sha256": "ea9a345331081ec46afb572f7ea174e8ad002baa84ef663191d49b24b13b2d5b", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 9, + "row": 6929 + }, + { + "path": "pmapper_descriptors.py", + "sha256": "259599e2673deb10a7aa14ccafd1675000faf5f6589c97af65687cf488b2f3e0", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 9, + "row": 10712 + }, + { + "path": "read_input.py", + "sha256": "6d058dfb36e7d245f6e180d5da845cd719d567058ea2905cbee98e7c0dd4a4f7", + "language": "Python", + "lines": 236, + "truncated": false, + "block": 9, + "row": 10549 + }, + { + "path": "remove_dupl_by_field.py", + "sha256": "50d755f2afe99ca6bab4ed9861d0b601a2c81dd9961241cba5ae80e5fae1bfa0", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 8273 + }, + { + "path": "remove_dupl_rdkit.py", + "sha256": "c50aaf15cc230b49ccc26be69902aa4649098dae62a636616ad545dc47c0357a", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8975 + }, + { + "path": "remove_isotopes.py", + "sha256": "f239527b6b0b33a4fa9afc612e1a296d512930cff3a1f4466260d21f2c8f0b02", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7783 + }, + { + "path": "remove_stereo.py", + "sha256": "ba468377a247e2dd7711e2987f587030d620782577546734995204de26a3a158", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 9, + "row": 7620 + }, + { + "path": "rename_mols.py", + "sha256": "1de025ab3ff3c5f3bd81ac15edce16ff5bf6110fc2852e88a755c0b042e1d7d7", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 9, + "row": 9024 + }, + { + "path": "rename_mols_simple.py", + "sha256": "11054a27df9af330db2d60733622671610cc402eaa22bfe139eec126cad383c3", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 9, + "row": 9462 + }, + { + "path": "rmsd_rdkit.py", + "sha256": "6fc28c88558140d70e7138caaac96ea5fe892d6e2bb124deaf405d0441b1361f", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 9, + "row": 10693 + }, + { + "path": "sanitize_rdkit.py", + "sha256": "d71f84c7b0030cf712dfa49d76e3c7dbc1dc3161bfc0d89cae93d2d4193170ca", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 9, + "row": 9774 + }, + { + "path": "sdf2mols.py", + "sha256": "7da95e6b44bbe3a024af11016fbeb681ad4ac42322f5aac33542ee617bca4579", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7153 + }, + { + "path": "sdf2pkl.py", + "sha256": "a3ce2b53367933a969600c8385b5915095c9fea535964cd170edf8ddee69e49f", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7541 + }, + { + "path": "sdf2smi.py", + "sha256": "3e208be9eb9d5f0bd03fb8b323bff47111b8d09fa6f237c09db57f72520c3c2f", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 8243 + }, + { + "path": "sdf_field2title.py", + "sha256": "90657c8c59512af3273cad05e4cf7d3277e15f11259513aede72706599db16e6", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 8099 + }, + { + "path": "sdf_title2field.py", + "sha256": "bc958f606e9a3e400ffa258bae7e32676c3765c672280a29ec10c88666c33a35", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7789 + }, + { + "path": "smi2sdf.py", + "sha256": "48601dd424fa0eb47c90dfd322fce69db55013fcb767e4d73dd04d158b3dc44c", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 8093 + }, + { + "path": "sphere_exclusion.py", + "sha256": "a50a4feb27fb4e30e81b135e21fac87ea6738ea828ba7823d4b3c91e909d7995", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7833 + }, + { + "path": "split_pdb.py", + "sha256": "254e18b9f4ff98d8db422a0c88024fd6501959be68298c47a74bf77903a70c49", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 6890 + }, + { + "path": "strip_blank_lines.py", + "sha256": "587a4eb24fc74c3b65d78f36e8db8bc9ddde6ccf458a47eff2898995a12a0443", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7682 + }, + { + "path": "test_pains.py", + "sha256": "2311fe50e64e681d0cb69c4f2564775e77d98114fc60908443cc2bd3af8347db", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8682 + } + ] +} \ No newline at end of file diff --git a/manifests/44/github.com__fricklab__imaging_2pcalciumanalysis.json b/manifests/44/github.com__fricklab__imaging_2pcalciumanalysis.json new file mode 100644 index 0000000000000000000000000000000000000000..ca2ab81901254e1eff87bcbe01cf27b721c5b059 --- /dev/null +++ b/manifests/44/github.com__fricklab__imaging_2pcalciumanalysis.json @@ -0,0 +1,462 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/fricklab/imaging_2pcalciumanalysis", + "url": "https://Github.Com/FrickLab/Imaging_2PCalciumAnalysis", + "host": "github.com", + "commit": "7db6cf1c509f5f157105c9d610148413b88d5eb7", + "license": "GPL-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Figures/DMSO_BMS.ipynb", + "sha256": "594fc6cdc07d0296a2725e164ead9455e3c163f7cd0a4ef56b41253e07dc640c", + "language": "Jupyter", + "lines": 1219, + "truncated": false, + "block": 9, + "row": 2738 + }, + { + "path": "Figures/Dec_imbal_resp.ipynb", + "sha256": "89b1f5fc4a021cadf99fd51d8748794d92cacb92db2b19659272174dd37d1432", + "language": "Jupyter", + "lines": 628, + "truncated": false, + "block": 9, + "row": 2681 + }, + { + "path": "Figures/Decoding_responsivity.ipynb", + "sha256": "1beb7b5de7384518f495cf61b34ef1362b1a99393f534e9284c0c566bd91a505", + "language": "Jupyter", + "lines": 415, + "truncated": false, + "block": 9, + "row": 2566 + }, + { + "path": "Figures/Response_characterization.ipynb", + "sha256": "f84b1eafc11cb6968364ca9df8f288917829e2dd48d220d349ff302d4e0274ae", + "language": "Jupyter", + "lines": 385, + "truncated": false, + "block": 9, + "row": 2540 + }, + { + "path": "Figures/WT_paper.py", + "sha256": "0aacc0c128fc90651756cc122a61ef5530c3a5f9fe7763243b4e68b6eb670a08", + "language": "Python", + "lines": 226, + "truncated": false, + "block": 9, + "row": 11171 + }, + { + "path": "Figures/baseline&cor.ipynb", + "sha256": "56da1dc986753288ac03415e277fdad6f816b4792eb08ca36e6b018caad90bbe", + "language": "Jupyter", + "lines": 493, + "truncated": false, + "block": 9, + "row": 2659 + }, + { + "path": "Figures/cross_corr.ipynb", + "sha256": "e000fde075798e9502915b00a0fea0414043863c82f1693d11f1f03099b421da", + "language": "Jupyter", + "lines": 80, + "truncated": false, + "block": 9, + "row": 2262 + }, + { + "path": "Figures/mlr_output.ipynb", + "sha256": "adc9c2f02ac82bc6eadfb3893f6054e5a08a4dad802844fb73a41cfde23521d4", + "language": "Jupyter", + "lines": 219, + "truncated": false, + "block": 9, + "row": 2497 + }, + { + "path": "Figures/noise_assessment.py", + "sha256": "718c815859f4b1d645bcd085c5498e762c0723c382e504d22295b2e16523fd5e", + "language": "Python", + "lines": 3277, + "truncated": true, + "block": 9, + "row": 12698 + }, + { + "path": "Figures/response_decoding.py", + "sha256": "4b6795163ca97d14f0a0b1c38a948244f00366fad40b3f94af6588daabfe97c1", + "language": "Python", + "lines": 1542, + "truncated": false, + "block": 9, + "row": 12639 + }, + { + "path": "Figures/responsivity_figures.ipynb", + "sha256": "676f1f38289bc29f2786942ff2da63f9fef4e2362bf37427e00abc0e2c7f3c25", + "language": "Jupyter", + "lines": 1226, + "truncated": false, + "block": 9, + "row": 2730 + }, + { + "path": "Figures/stimulus_encoding.py", + "sha256": "8c3794e1c5cd4dcc9007539e41ce1b9ebf370a74f6533b78bc78ed535d4d50d9", + "language": "Python", + "lines": 1827, + "truncated": false, + "block": 9, + "row": 12658 + }, + { + "path": "Figures/tbt_pattern_var.ipynb", + "sha256": "a65d8504e80e9a9fc8b98da27b0b2c7cff2d0d4378616004a4f2c9e9728b8b54", + "language": "Jupyter", + "lines": 522, + "truncated": false, + "block": 9, + "row": 2668 + }, + { + "path": "Figures/traces.ipynb", + "sha256": "3b9cb2be110b9b858fe27fee10783550e57cbe45e37f1c8898a9a9fdaaf95803", + "language": "Jupyter", + "lines": 229, + "truncated": false, + "block": 9, + "row": 2499 + }, + { + "path": "Figures/traces.py", + "sha256": "d649d9c948ee96daac6ccd5dd7676ce7d04299b9077bc2445846688271b264b0", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 9, + "row": 9858 + }, + { + "path": "Figures/tuning_firing.ipynb", + "sha256": "e4913f4d863b7897f676691c036155b78962ba5cbdd151c6380058dc71c0d49d", + "language": "Jupyter", + "lines": 59, + "truncated": false, + "block": 9, + "row": 2221 + }, + { + "path": "LICENSE", + "sha256": "8177f97513213526df2cf6184d8ff986c675afb514d4e68a404010521b880643", + "language": "License", + "lines": 339, + "truncated": false, + "block": 1, + "row": 2221 + }, + { + "path": "README.md", + "sha256": "801836cbb1d3385d77aafe64e138c530b3bdd0dbacadc12384a7e0f4d466783e", + "language": "Text", + "lines": 14, + "truncated": false, + "block": 9, + "row": 14466 + }, + { + "path": "docs/conf.py", + "sha256": "a31b486425f7b6bc6c1eccf941640f5f799ffe90ce10c983429eb66696d6e216", + "language": "Python", + "lines": 199, + "truncated": false, + "block": 9, + "row": 9898 + }, + { + "path": "percephone/analysis/baseline_again.py", + "sha256": "4a0a45c311441e7fa130ada38a76e1a25d894ce711391206f56f4cc327ff8412", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 9, + "row": 8280 + }, + { + "path": "percephone/analysis/bslcor.py", + "sha256": "fec10960c741da6779be7ba8fc30b2474b00990e3caba036c1370e50c14d7dcb", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 9548 + }, + { + "path": "percephone/analysis/cosinesim.py", + "sha256": "227f696196be9b602ca2893b1632702bea93c4d3123c31a578d5f93ea5260f13", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 8188 + }, + { + "path": "percephone/analysis/crosscor.py", + "sha256": "f6c7168edfe0e243a57d9f595c10560562ebbd85a0b025af8a29a76a5be14654", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 9, + "row": 10180 + }, + { + "path": "percephone/analysis/mlr.py", + "sha256": "2245b38fbd1281200a818abaa6dcc2efd3a8c9be6e538d487acea79d408edfd1", + "language": "Python", + "lines": 278, + "truncated": false, + "block": 9, + "row": 10887 + }, + { + "path": "percephone/analysis/mlr_models.py", + "sha256": "107f72c2e38975bc8b702b144618ddf309e65a55b5a56a775e33de3207745fb6", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9879 + }, + { + "path": "percephone/analysis/response.py", + "sha256": "6e1a229656192f9b94cc96a7910a9a54f15b5dc5a5e53d8ae0100a7973f9ff8c", + "language": "Python", + "lines": 361, + "truncated": false, + "block": 9, + "row": 11560 + }, + { + "path": "percephone/analysis/utils.py", + "sha256": "936f64ae3d2487df5a5cad2ba26635abd4065913124f63d34ca4ae0bcb0f5bf0", + "language": "Python", + "lines": 293, + "truncated": false, + "block": 9, + "row": 10944 + }, + { + "path": "percephone/cebra/CEBRA_multisession.py", + "sha256": "f0f12542129466347e2daf3e8b752bd8f10691e07c2850d028dcb4306257118d", + "language": "Python", + "lines": 149, + "truncated": false, + "block": 9, + "row": 9586 + }, + { + "path": "percephone/cebra/CEBRA_trials_viz.py", + "sha256": "c83576689e46248a89605fceea9e6332e30278a04c8945ac556b8c81927788f2", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 9, + "row": 9333 + }, + { + "path": "percephone/cebra/cebra_decoding.py", + "sha256": "8a41e123fef5b3be85e14a7bbebd3b7b845d1d732778504de7795547a7c9859b", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8518 + }, + { + "path": "percephone/cebra/cebra_meantrials.py", + "sha256": "b4e082d9a316da6ea4258ce3c175b1d72d5a037349d2b1b7f7d834eb1afd6d11", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 9114 + }, + { + "path": "percephone/cebra/main_cebra.py", + "sha256": "05f086e8821ef31e5a0fea3769289c9462bcdcc20dfebbd3b0ba0319d4b544c1", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 9, + "row": 8992 + }, + { + "path": "percephone/cebra/main_cebra2.py", + "sha256": "d2119873e686638899fbee77097e6799693508706998ab944bac1146db3fb014", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8717 + }, + { + "path": "percephone/cebra/main_multitrials.py", + "sha256": "cbadfa3d040c6b139618b7a2c14ac34e95d09fef23b8a65dc5fd633b3f610a27", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 9, + "row": 10040 + }, + { + "path": "percephone/core/recording.py", + "sha256": "515c2cd184335e6e321d7f510b0d9840c7d5e757fde6ce86bbfd99d55e19a858", + "language": "Python", + "lines": 984, + "truncated": false, + "block": 9, + "row": 12523 + }, + { + "path": "percephone/deconvo/spike_rates.py", + "sha256": "f0406c7fe62dddbec45524341eafbca03f8724d8929fb2bc4f725f2676000e94", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 9447 + }, + { + "path": "percephone/modelisation/decoding.py", + "sha256": "4d08e4602431f849f5d28e3ba342d35e3016f6079d9a69bd52b2b1ac7c159665", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8592 + }, + { + "path": "percephone/modelisation/frame_decoding.py", + "sha256": "a744a7f2fd52e8814aa92d4217ccba3ee8e8c68b86c4a273f32d6db4b0b44646", + "language": "Python", + "lines": 511, + "truncated": false, + "block": 9, + "row": 11879 + }, + { + "path": "percephone/modelisation/suprasub_frame_decoding.py", + "sha256": "15dfb5e74386fa1beb1e2a014a72bd50b6c9a5d13a7481c803441fca4599be4e", + "language": "Python", + "lines": 193, + "truncated": false, + "block": 9, + "row": 10684 + }, + { + "path": "percephone/plts/behavior.py", + "sha256": "2e00d8d595f7ddb0978cee6a92b4a4141aed38f50fa934891ebbe7a5067464b9", + "language": "Python", + "lines": 1056, + "truncated": false, + "block": 9, + "row": 12533 + }, + { + "path": "percephone/plts/heatmap.py", + "sha256": "d5125ad002f98cc8eb2ad6203b379f8dee4f07f4c140b219b6074687b7df98ef", + "language": "Python", + "lines": 662, + "truncated": false, + "block": 9, + "row": 12290 + }, + { + "path": "percephone/plts/old_heatmap.py", + "sha256": "8993dd3ae6ebc9a65f81ea818069abedd178a6d36bc653d16a8f5dcb51acb4c5", + "language": "Python", + "lines": 251, + "truncated": false, + "block": 9, + "row": 11014 + }, + { + "path": "percephone/plts/response.py", + "sha256": "abf934507f86b9f74ae68390c20b1b7834708a546a7c65155128cafa77178175", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7851 + }, + { + "path": "percephone/plts/scalebars.py", + "sha256": "4c9be8eb6e973f420e7e917ab8eb6b03ec03cebf94de3cb4cd20ad7192bee9c5", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8606 + }, + { + "path": "percephone/plts/stats.py", + "sha256": "39cb806fe2b437546026fe0ae0fddf7dd9b6c7d7db19e244d4bba9cca368a26f", + "language": "Python", + "lines": 1017, + "truncated": false, + "block": 9, + "row": 12503 + }, + { + "path": "percephone/plts/style.py", + "sha256": "ffaacea3aee2bbdbbec223d4e0bd69dbe437d5d8c6b66dde05ce886f40dfa0d2", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8088 + }, + { + "path": "percephone/plts/utils.py", + "sha256": "707cf0457f770fe324fc21820770a0e7d1f2638224bf6ef5e7b475b2a9334322", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 9, + "row": 10371 + }, + { + "path": "percephone/utils/__init__.py", + "sha256": "73a33b54007356201006ecbc38381003892098fa38f3ac46bd725337589a70c9", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6086 + }, + { + "path": "percephone/utils/io.py", + "sha256": "3cae57d22e42f4c0ce00f792a4f6fbd786a148a5f5db4bfc61da30d611347ad7", + "language": "Python", + "lines": 198, + "truncated": false, + "block": 9, + "row": 10511 + }, + { + "path": "percephone/utils/math_formulas.py", + "sha256": "c53928c597b1d9a4e4229d5e3743335349d432a2e2cd0914c5bd2a0e4049269d", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 8202 + } + ] +} \ No newline at end of file diff --git a/manifests/44/github.com__kids-first__kf-tumor-workflow.json b/manifests/44/github.com__kids-first__kf-tumor-workflow.json new file mode 100644 index 0000000000000000000000000000000000000000..16c31aed389fc17fa616426f8490b9f0c35b42ab --- /dev/null +++ b/manifests/44/github.com__kids-first__kf-tumor-workflow.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/kids-first/kf-tumor-workflow", + "url": "https://github.com/kids-first/kf-tumor-workflow", + "host": "github.com", + "commit": "8f23c1065fc6d6b545647b0c46d884539fb9040e", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": ".github/scripts/workflow_to_docker_table.py", + "sha256": "d4b8fb73af9229ab7c14ff0660a2db55c94b8aa44a4ae6cd59a9307b722412d3", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 8357 + }, + { + "path": "LICENSE", + "sha256": "eeb4e45ab25ff9d1ff434fe3d69eabfb30176359ee98f66db3f66b1cfd8c580c", + "language": "License", + "lines": 201, + "truncated": false, + "block": 9, + "row": 2899 + }, + { + "path": "README.md", + "sha256": "1f17dc6905b787805442ef20bba006a561cc4e7a12c9e80f3a5d20b15e69bb31", + "language": "Text", + "lines": 106, + "truncated": false, + "block": 9, + "row": 14687 + }, + { + "path": "test_scripts/check-changed.sh", + "sha256": "122aac175f082c83a0367467c8c484e6519918fa892a22fac6b76d626bf03ef6", + "language": "Shell", + "lines": 4, + "truncated": false, + "block": 9, + "row": 13902 + } + ] +} \ No newline at end of file diff --git a/manifests/44/zenodo__19153451.json b/manifests/44/zenodo__19153451.json new file mode 100644 index 0000000000000000000000000000000000000000..5acbe1bc9de8156c1fbb0786bf8977edddc4291a --- /dev/null +++ b/manifests/44/zenodo__19153451.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19153451", + "url": "https://doi.org/10.5281/zenodo.19153451", + "host": "zenodo.org", + "commit": "", + "license": "CC0-1.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499", + "language": "License", + "lines": 121, + "truncated": false, + "block": 1, + "row": 2210 + }, + { + "path": "README.md", + "sha256": "5b89348eb2ebb5600901d647f0e20f1d23c67dca289938373e0494058f593dcd", + "language": "Text", + "lines": 22, + "truncated": false, + "block": 9, + "row": 14475 + }, + { + "path": "codes/architecturenn.py", + "sha256": "41a68e8317681c409ec21b6922681101f18292e29c73dba26311864ae4296944", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8480 + }, + { + "path": "codes/execute_experiment.py", + "sha256": "171f5a55903ed4ecfb62ff48e3aa7a16e865d88ad49d78a46abb4b259e736f77", + "language": "Python", + "lines": 578, + "truncated": false, + "block": 9, + "row": 12252 + }, + { + "path": "codes/utilsfiletraining.py", + "sha256": "f8d94056b50e64e5b2c23a194710c8ff87b3c0a5b1ac48849e0f102126523188", + "language": "Python", + "lines": 800, + "truncated": false, + "block": 9, + "row": 12289 + } + ] +} \ No newline at end of file diff --git a/manifests/45/gitlab.com__epfl-lcsb__rekindle.json b/manifests/45/gitlab.com__epfl-lcsb__rekindle.json new file mode 100644 index 0000000000000000000000000000000000000000..9ad5e1925bb1af661c264cb8aaa283e31e727d2d --- /dev/null +++ b/manifests/45/gitlab.com__epfl-lcsb__rekindle.json @@ -0,0 +1,4935 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "gitlab.com/epfl-lcsb/rekindle", + "url": "https://gitlab.com/EPFL-LCSB/rekindle", + "host": "gitlab.com", + "commit": "3bd93f4ab98b9630e7b3edb8eb50ad6e28051708", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4", + "language": "License", + "lines": 201, + "truncated": false, + "block": 1, + "row": 2216 + }, + { + "path": "README.md", + "sha256": "d2a9cb5ee14cd18414f296041ce0aa0ff2c6f66e0f80fcbc5c46e9d40b13dec4", + "language": "Text", + "lines": 122, + "truncated": false, + "block": 9, + "row": 14633 + }, + { + "path": "venv/.ipynb_checkpoints/demo_rekindle-checkpoint.ipynb", + "sha256": "6d95158528bbcb96a288fe13249cbb7543af0d2f94bd51b4ebcfaeba64e411e7", + "language": "Jupyter", + "lines": 248, + "truncated": false, + "block": 9, + "row": 2437 + }, + { + "path": "venv/N1-rekindle-data-preprocessing.py", + "sha256": "89532fe487c3eebd80fd2353c68949fcf53689b124a648f8ecb77fbddb5a9dc5", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 8857 + }, + { + "path": "venv/N2-rekindle-do-cgan-training.py", + "sha256": "09917db41437f492e6d069448ba83599eed39737cfcc910e9a7d4edef5427d80", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8455 + }, + { + "path": "venv/N3-skimpy-calculate-eigenvalues.py", + "sha256": "07cbf96ea6929afc373b85efc023a3b7af850f95fc78f1907158be13c003a537", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7194 + }, + { + "path": "venv/N4-rekindle-generate-using-trained-models.py", + "sha256": "b1d8e4283aa38de5da17205e89d5d1877e4b897ecadf869374daec5b76baf1a1", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7079 + }, + { + "path": "venv/N5-skimpy-convert-parameters-to-hdf5.py", + "sha256": "ba115d6cf9fa1000d9f677ab55eecd148dc2c8697666d9b91e56bd21f8634744", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 9, + "row": 9284 + }, + { + "path": "venv/N6-skimpy-integrate-ODEs.py", + "sha256": "7c99e5f4ee08bdd5b86a3950edbdd50a7f08ba1928f8584693f461d026ba5014", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 9, + "row": 9517 + }, + { + "path": "venv/bin/activate_this.py", + "sha256": "e3976726c76d39622de4bb554819817c1f04ec094a72786765ef5edd619c95a9", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7248 + }, + { + "path": "venv/cGANtools/GAN.py", + "sha256": "d0018fc044f693d80649d43512d5fe21242dd6c126823921afee513f88e0b659", + "language": "Python", + "lines": 300, + "truncated": false, + "block": 9, + "row": 10988 + }, + { + "path": "venv/demo_rekindle.ipynb", + "sha256": "6d95158528bbcb96a288fe13249cbb7543af0d2f94bd51b4ebcfaeba64e411e7", + "language": "Jupyter", + "lines": 248, + "truncated": false, + "block": 9, + "row": 2437 + }, + { + "path": "venv/helper.py", + "sha256": "fcbb6e5da4172fac6d5b8356ed32eae7793682edfaa1f9f0d0f87295c56c39ce", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 7755 + }, + { + "path": "venv/lib/python3.8/site-packages/_distutils_hack/__init__.py", + "sha256": "5f7454880e8a04fa0499ca3f0a3002ca5b7241b15119552965101b4a43c6c0cb", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 6, + "row": 37925 + }, + { + "path": "venv/lib/python3.8/site-packages/_distutils_hack/override.py", + "sha256": "12efecf8d17a5486780aa774b5b6c0e70b56932d8864f35df1eb7a18bb759b3a", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 6, + "row": 20343 + }, + { + "path": "venv/lib/python3.8/site-packages/_virtualenv.py", + "sha256": "684b8c07932ba4a84ac2e5ae9afe49ef04e92bac3d8d4191d455cf09d093e5fc", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 9, + "row": 9722 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/__init__.py", + "sha256": "c65eaf2564e7eec07bbf987ba8f8fe0ad4f37d7bdb05ecd8d45c5ef529a37752", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6563 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/__main__.py", + "sha256": "997c160dfb4d2cc29fc15a8a156184feeb8166f1922225042e12e47b2b08b997", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 6, + "row": 26851 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/__init__.py", + "sha256": "5ef275248ba64277cb345c5545d7ffc6b6e191383558c52b7f61b3ac7dbb1770", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6589 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/build_env.py", + "sha256": "da116d6c4a0ee2f0341717a137f7b6a1767fdc4ded02f2a99d599cf2c3988efd", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 9, + "row": 10777 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cache.py", + "sha256": "e9538db6845e1996c177bb2a6359fa87091d582e22cf7b665f05f0663a6364ac", + "language": "Python", + "lines": 287, + "truncated": false, + "block": 7, + "row": 2846 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/__init__.py", + "sha256": "1641c1829c716fefe077aaf51639cd85f30ecc0518c97a17289e9a6e28df7055", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 6, + "row": 20840 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/autocompletion.py", + "sha256": "af619049a1c78a6d4bc0f84c68ef4c3de29db12bf91fc4bd12556c981c9035ec", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 9, + "row": 9956 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/base_command.py", + "sha256": "dba3079e5cd9482f969368f6386b010ece5c97695a76ba2f272572d7fda0d199", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 9, + "row": 10348 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/cmdoptions.py", + "sha256": "e76248c8fe42eb24fc0e94f53b666c78063ebccbcb4dbf05a8ed20f3938560cb", + "language": "Python", + "lines": 1024, + "truncated": false, + "block": 9, + "row": 12193 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/command_context.py", + "sha256": "936245e563ec3f530d29a5d62bc8d915b26161f7f391dbc668fb0be77b596c35", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6922 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/main.py", + "sha256": "1bf3ac63ae85651b662eb309e24de6efbb66b6c451450777ffeaa57b596f9a78", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 8222 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/main_parser.py", + "sha256": "1bbd19d5f5cb633789baea2d8302b0abe75a089d230a6987c71e9a147cfa5804", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 9, + "row": 8317 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/parser.py", + "sha256": "af1e30e88803d0e6e2eedd64f66574ce5621cbf0ee0a86830aa86450a30e14d5", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 10980 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/progress_bars.py", + "sha256": "724fc82e38ba6914c6d33c576a39cf588a504c6c53ce6de7b1c64ec703664d6a", + "language": "Python", + "lines": 261, + "truncated": false, + "block": 9, + "row": 10552 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/req_command.py", + "sha256": "ade7cfc9974aba5bab89d70b68275226d832605721c5df72f2930ca7fecf3beb", + "language": "Python", + "lines": 461, + "truncated": false, + "block": 9, + "row": 11623 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/spinners.py", + "sha256": "54b752582bf29372a892e8cbc817ff40a61c19bade3d0a0f078bfb8ea1bbc720", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 9, + "row": 9599 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/status_codes.py", + "sha256": "b0414751a5096eabfc880acbdc702d733b5666618e157d358537ac4b2b43121d", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 6, + "row": 20754 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/__init__.py", + "sha256": "bfec6697ca0cc2b4210a9980a64a5c30e13decca7c41a071a1139b9c64b8dfff", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 8904 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/cache.py", + "sha256": "0042dff7c45647f82253dc25d114977fe32c4f23b91bf8b03b4887a05e056e67", + "language": "Python", + "lines": 228, + "truncated": false, + "block": 9, + "row": 10251 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/check.py", + "sha256": "0edd30ecda85a7ca3fe3927bc37d8642b29ececcf6bf0a3f53c526b070fd60d2", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7572 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/completion.py", + "sha256": "5314b4f6cf2b127534f000223778077502235385c64a5bf9489deb209753ca10", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 9, + "row": 8494 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/configuration.py", + "sha256": "5f57dd55d120f0c1c5b40ad4fb76cce9604d6b1d44ed9eeab333c47652b5ceaa", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 9, + "row": 10677 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/debug.py", + "sha256": "ca7b4ea65c3ddd56684005410770573cabaa6da9b8993e9312b6acb45c05cb7b", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 9, + "row": 10089 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/download.py", + "sha256": "ceff12fc3376fa4e8ad15491df208f2d2acb7a1a18923dc8bf23b51e8f2df15e", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 9, + "row": 9456 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/freeze.py", + "sha256": "bcf560bb005bd79b9bbfc12cf683d2c9678f05ed9cab7f50c635382a2cde4f09", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 8778 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/hash.py", + "sha256": "8a9eb802c27a105504696283bec6667501e4b35253120ac38c7e5bca5f886327", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 7671 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/help.py", + "sha256": "e8c9f3ada93f8fec84de9b030aa8b61b121226a219274e0339b294f50867c4c1", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 9, + "row": 7197 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/install.py", + "sha256": "685bd941f3eb32b1c36fa8e36e6ad5972bc3c4c21e5f765c64a490bd8e9cd0a2", + "language": "Python", + "lines": 740, + "truncated": false, + "block": 9, + "row": 12143 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/list.py", + "sha256": "8dfa834b8c6f9ba595f2b1d54a6be9688f35d6e92f0f83a23d9c0618a330c242", + "language": "Python", + "lines": 319, + "truncated": false, + "block": 9, + "row": 11020 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/search.py", + "sha256": "1307063e40c34f014ca62d8f04a84fb965f660130f732ecec755857169e8b9ac", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 9, + "row": 9701 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/show.py", + "sha256": "b33daf6f187897b063e232a59031931d80fa23cfddb92a525055715221f8e314", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 9, + "row": 10106 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/uninstall.py", + "sha256": "103731ddad3797753cb69676a787df21d9f8e61636605126abdca879c705da8c", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 9, + "row": 8643 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/wheel.py", + "sha256": "c0a19292cb988e38603986bf8c3eae95a2a93d7694ccf8b2cdf44d353e033a2a", + "language": "Python", + "lines": 178, + "truncated": false, + "block": 9, + "row": 9908 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/configuration.py", + "sha256": "4012df86ffac6cffa8474f0d1714989effe62c1f9282d34eb165c017db4311c3", + "language": "Python", + "lines": 403, + "truncated": false, + "block": 7, + "row": 5781 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/distributions/__init__.py", + "sha256": "a30d623d6fd0a7e4cec8e53e5a084e282f2f02fd7f4b2935cc44d954efef2841", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6961 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/distributions/base.py", + "sha256": "5159dd6a89348ce1eb2c7d09a8dd18ce5c55127bc542e998cb7edd898dd90ae1", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7289 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/distributions/installed.py", + "sha256": "b9a4cc3ef63786bfccd410b2d74eef2475aca4a30982b3f1bf7d16dffcd96744", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6799 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/distributions/sdist.py", + "sha256": "728f1f351f2a2211d12c19dcc15f76a09edef0838218f804b1b10574d3e4d589", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 9028 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/distributions/wheel.py", + "sha256": "9fd32a3685b232a36c71f6cd79eaa1d5bceda19522079c751fd878b457e2254c", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7256 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/exceptions.py", + "sha256": "d89409492ebca20811fd920e03e8755360d10035116e4427f4d7f8119599f37e", + "language": "Python", + "lines": 397, + "truncated": false, + "block": 7, + "row": 5421 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/index/__init__.py", + "sha256": "be9b7e25e4d979f87c6be142db665e0525c555bb817174868882e141925a3694", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 6, + "row": 20234 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/index/collector.py", + "sha256": "6845ed1cad0b6b89c63fb9aee4de42437b667e369cccbc1b1a2f00af8a06cf9a", + "language": "Python", + "lines": 556, + "truncated": false, + "block": 9, + "row": 11725 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/index/package_finder.py", + "sha256": "dc9f51cead4d00eda9ff30dbe1fbf7dc6781041398bac57d917b409f68fa7825", + "language": "Python", + "lines": 1012, + "truncated": false, + "block": 9, + "row": 12362 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/index/sources.py", + "sha256": "495c8f8adbf4f3e41a961dbf064e5d88027d18003f77e6bdde4a28b90a1d006d", + "language": "Python", + "lines": 224, + "truncated": false, + "block": 6, + "row": 44255 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/locations/__init__.py", + "sha256": "f445d1c42a7288c0a553cefe3f913aead705c726dc03f2b32ebcdc2b656def3b", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 9, + "row": 9399 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/locations/_distutils.py", + "sha256": "2f97e5452afd047d250703d497ad5cc817353a7543d3a14e10d9033118f2837f", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 9543 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/locations/_sysconfig.py", + "sha256": "4edf2090deec8716eaa14973a8cd7d9b28814736dfb7d0b39267124b8607935b", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 9, + "row": 9816 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/locations/base.py", + "sha256": "41b929826cc86d606750bdbfdeabb6f6ca8235ec28a986e4570f0a9a28117b67", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7495 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/main.py", + "sha256": "059d2f91daa0a68b5e4e8d40d50f28bc57bc13380a14958e5233e621441f1826", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 6, + "row": 21984 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/metadata/__init__.py", + "sha256": "288351f1960efe295cda9915dede4a7102f358b35cdc68d90e4946593549fb35", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7490 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/metadata/base.py", + "sha256": "e81881fdbde5bcd1d821529bceb0e18b46c999296ce50d4afa205e1d694a9c8c", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 9370 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/metadata/pkg_resources.py", + "sha256": "e0554fc58140050ff5b5b87f0910732b8c74fd22201f5b822b1d992f2864a2e4", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9180 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/__init__.py", + "sha256": "dc31d477fab1a4fa337f3a2ea2a6bd83db6cd42cebe6a6877c5c5b9f1ae27a93", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 6, + "row": 20476 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/candidate.py", + "sha256": "2e5c8617648c1a379eb7d6cb6c40330160cff3659ca77df8d98b1aeed096ffd3", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7082 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/direct_url.py", + "sha256": "56b9c934ea9c3f39df35aae34096afb31dad806ec67dc2dae8fc990ae7ff2fb0", + "language": "Python", + "lines": 233, + "truncated": false, + "block": 9, + "row": 10026 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/format_control.py", + "sha256": "9768e9e3b996b09a7bf8bc4cb34e65f53faa160f59e4fc1dc8ff51ed773f5594", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8307 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/index.py", + "sha256": "6ac32b69954f234b27c9ee34e06ced1295e029eae3d72005999976a7778de018", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7144 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/link.py", + "sha256": "e707476c60cb6da7d2758a68d8acbb17d451a36dbacd1cba8a4ddc2c7ffc2b07", + "language": "Python", + "lines": 248, + "truncated": false, + "block": 9, + "row": 10270 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/scheme.py", + "sha256": "8aa71e0bb80a8939f664b8023a01906dc9a8e3d4d183d1274144ac407dd4fbb0", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 6896 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/search_scope.py", + "sha256": "e2e18d12a62bcf892eebf5b3a30aa2bee32f3747e3e57434dd6075e188dc3795", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 9, + "row": 9314 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/selection_prefs.py", + "sha256": "68d4432fdec6cf7c96256de8834caebce914d3650bf0e78d403b836ad67c483a", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7869 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/target_python.py", + "sha256": "48b186df3f4f8ff0a20398e6327343bf630ddd24f791e56e6a7543cd3bcee693", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 9057 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/wheel.py", + "sha256": "3168f142404d5c8e97396893bb3306eee38d845bbcc40f783aa0fff41b88b157", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 8867 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/network/__init__.py", + "sha256": "8dfe93b799d5ffbce401106b2a88c85c8b607a3be87a054954a51b8406b92287", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 6, + "row": 20395 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/network/auth.py", + "sha256": "77c0dfd1fcb4d4fd632651775c330cf000b292d47570df735111bec9ed6771cd", + "language": "Python", + "lines": 312, + "truncated": false, + "block": 9, + "row": 11101 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/network/cache.py", + "sha256": "27fc69b0b59b46b942494710840e7e4ee4f92d6225a55b531f87d9d574a3c9be", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8046 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/network/download.py", + "sha256": "f1fadbd9b20d39ffa36e614f6a929bc843bdb235c95891ba389696e2143daf7b", + "language": "Python", + "lines": 196, + "truncated": false, + "block": 9, + "row": 9923 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/network/lazy_wheel.py", + "sha256": "5cc7eb0cad48072e382f71b1dd467607cb3dd154570daf7ae76d0838f9b398e5", + "language": "Python", + "lines": 224, + "truncated": false, + "block": 9, + "row": 10394 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/network/session.py", + "sha256": "5477a2a2b3df9583cd58ada933fab6d9cf87e6099104387d50a0895b75405052", + "language": "Python", + "lines": 449, + "truncated": false, + "block": 9, + "row": 11570 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/network/utils.py", + "sha256": "baa4fa4243bd347530a93c3780705631015d698a9869b078db741466e8900f77", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 9104 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/network/xmlrpc.py", + "sha256": "08bd5604e4e0c4fc1b719e90b9b678a574178dbeea4d31694d415ef9969691c0", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7657 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/build/metadata.py", + "sha256": "8c9a74e51ae9d0032c41bee2cc35db3460b52ed3cdc0e847423edc44ce77db87", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7215 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/build/metadata_legacy.py", + "sha256": "10230184b10f110bfa3d4502a4f0975bec0df50457758e393cd5c9bfb0592935", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 7841 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/build/wheel.py", + "sha256": "5982ccc6ec6a3776a1253424d8c23d85d999281a45cb11de36951d3b43f26f15", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7158 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/build/wheel_legacy.py", + "sha256": "34e2614d831896375b8b3168fd68e468a1961b548467a681cab05d0abaec641f", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 8647 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/check.py", + "sha256": "3ad319d9f7f4ce4f0686997b7885f2499e03f290947f33c060da464f1c35a965", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 9, + "row": 9560 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/freeze.py", + "sha256": "0fe7b1d01c32e84d04552fe01e58b1944a4a0e94711599d4993cbb9dff2ceedb", + "language": "Python", + "lines": 264, + "truncated": false, + "block": 9, + "row": 10822 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/install/__init__.py", + "sha256": "997ee1c83d863413b69851a8903437d2bfc65efed8fcf2ddb71714bf5e387beb", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 6, + "row": 20404 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/install/editable_legacy.py", + "sha256": "6e304e6df13ab33dd498623bcb8f860a029ad969938275a514553b6fe8b4b10b", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7430 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/install/legacy.py", + "sha256": "7f9f5f41b34b3b6aef97c6cd426fc2b96e9d80fbd75d0ef2e5aa6e956662d351", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 9, + "row": 9149 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/install/wheel.py", + "sha256": "d605761bea30940da2c1c6f160073804e4e23d144607c4f3a6e534c2e84cd954", + "language": "Python", + "lines": 819, + "truncated": false, + "block": 9, + "row": 12215 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/prepare.py", + "sha256": "0171cd83588671e835972a83a9b71a6e600521f4359357087e09956392425a8a", + "language": "Python", + "lines": 655, + "truncated": false, + "block": 9, + "row": 12072 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/pyproject.py", + "sha256": "6cdfdd962155c68acb213c421334f45263d81684aa93fbc606d3354308906b2b", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 9, + "row": 10142 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/req/__init__.py", + "sha256": "95134706fd1901935b4b099753e5d4766eba82c88d9ae8810e2d431582788484", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 8513 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/req/constructors.py", + "sha256": "e2c8a719deecaca848f780d5e973bea915f633a2abf74ece166b1f9252abb7ae", + "language": "Python", + "lines": 486, + "truncated": false, + "block": 9, + "row": 11574 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/req/req_file.py", + "sha256": "9cf205976322f540c686b8fe2b4137fd0ba017bb65dd4043b72d5ccdb205edf9", + "language": "Python", + "lines": 551, + "truncated": false, + "block": 9, + "row": 11706 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/req/req_install.py", + "sha256": "451da691a014d91103b63658de7472d288dc500fc17f42698d7f594f265451ae", + "language": "Python", + "lines": 892, + "truncated": false, + "block": 9, + "row": 12295 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/req/req_set.py", + "sha256": "02eb6c6a2576b3ed882f0b56b530383895bf64b460e065e0eb033463f8596f59", + "language": "Python", + "lines": 199, + "truncated": false, + "block": 9, + "row": 10366 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/req/req_tracker.py", + "sha256": "5ee3f0797d656c95d3da04a40972024b98676ba6f299ee4f790a783a4f3e476a", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 9, + "row": 9233 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/req/req_uninstall.py", + "sha256": "8000a29d321c49c646c3cd6a2da15d4e3f4a197955b82a6bbbb5ef1c68c813e1", + "language": "Python", + "lines": 640, + "truncated": false, + "block": 9, + "row": 12026 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/base.py", + "sha256": "4f84277d284912ba4f59ee223a23bb5665eecf56f17b6d0b2cdb37dc052c9583", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 9, + "row": 6704 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/legacy/resolver.py", + "sha256": "385ffa621e21ac57c9e2ed072c5e19441940f2504751f01a16786e54a21084f3", + "language": "Python", + "lines": 462, + "truncated": false, + "block": 9, + "row": 11701 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/resolvelib/base.py", + "sha256": "31b6a4caa4a8b41195269237900a6aa8fd9f3cf66287d0e0b1f929b8577e0033", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 9, + "row": 9730 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/resolvelib/candidates.py", + "sha256": "744292b8af41e4ce767354ae801e37cd79e7c603563536bb8420b022d497eb57", + "language": "Python", + "lines": 604, + "truncated": false, + "block": 9, + "row": 11827 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/resolvelib/factory.py", + "sha256": "b5aa9e0e65e4d24018f4456a48c84426b898d363124a16d9bedf55a84020930e", + "language": "Python", + "lines": 661, + "truncated": false, + "block": 9, + "row": 12085 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/resolvelib/found_candidates.py", + "sha256": "173c4a73385e9771a156238811f18751f510eab3775346e530c52ebbe6e51df5", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 9621 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/resolvelib/provider.py", + "sha256": "1d82139e3b3b85cc431803420dd2f8aa0d8c2756b0d6303d70ccb134fda62eb9", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 9, + "row": 10319 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/resolvelib/reporter.py", + "sha256": "c60682b572e3efdd40fea45f57d6359d719e69656adc9134ca0200dd83515aad", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 8381 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/resolvelib/requirements.py", + "sha256": "7c5d911fa5426a74ee17e8b0bbcb5963c061d056a40c14f0eed9032724eccbd1", + "language": "Python", + "lines": 198, + "truncated": false, + "block": 9, + "row": 9849 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/resolvelib/resolver.py", + "sha256": "de1967ad9925b33154c06405177de72e410ef24c73e2f677fee2a9fcbf18be61", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 11129 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/self_outdated_check.py", + "sha256": "8afa1461a1aeabe45afc3be566f3ed1e181b63decd28762e3c6ceb80dd86d40f", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 6, + "row": 44143 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/appdirs.py", + "sha256": "1c208568ead93a730bcd10e929770c88587fda4599f8fcc574df2978b8b090d6", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7273 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/compat.py", + "sha256": "239f2d4d9deaa8666a78654ffe611133c37b40fbbbd6788ba717cedc88f68df4", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7837 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/compatibility_tags.py", + "sha256": "21c4041c2649bdd7ca7220029971822addfd628836fd0d9740a307a2303fda98", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 9, + "row": 9699 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/datetime.py", + "sha256": "6e265d109110046abc03e37ba28a68b22a5e1b39921dd234597eb492597f004b", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6484 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/deprecation.py", + "sha256": "083f60535ce60ed0b7364d93335e0556901afdbc4231dd372b1e6ddcba05c248", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 9, + "row": 8674 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/direct_url_helpers.py", + "sha256": "f9c859531749905446fa9036318eff5a28b9539a35f28e4ae00a81b1677ddbe7", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 9, + "row": 9048 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/distutils_args.py", + "sha256": "2b15936b3d3b03fd6e902cb0fe935a87e8bab01beb56d74cb2717c8e0b833584", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7309 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/encoding.py", + "sha256": "4f47104e4181efeb37c22bcb94770a6caaaf268334c8b768f28b7cf4b946773d", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7235 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/entrypoints.py", + "sha256": "9b851790b6539cfb1d4a2b10ccd1621ccd4265c30af0dd4203df20e0e45ec767", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 7129 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/filesystem.py", + "sha256": "6b7ae7a1407f1d37446c368050748d30f207a8776ce1403e98b4396ef80e8d24", + "language": "Python", + "lines": 193, + "truncated": false, + "block": 9, + "row": 9847 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/filetypes.py", + "sha256": "c1ebe255b6a91d6550ffcf8af8f4d0fd39d82faea4662e12ad50539916195cb7", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 6, + "row": 24227 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/glibc.py", + "sha256": "18cd58da15a439ffedba6c9218583e88d6dcee88a505042b8dccdbffbd39085f", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 6, + "row": 36381 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/hashes.py", + "sha256": "a35a90124a9ed80aac466fc984ba0ce21931995b5ec07d1966943a10139b1ee5", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 6, + "row": 41682 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/inject_securetransport.py", + "sha256": "b4697d060cadd881cab41ddbd01fbaaf75b6c981773a0f8f05ed3ae3b4b7959b", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 6, + "row": 24495 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/logging.py", + "sha256": "064a774128eeaf77a492e9c0227b0627a96ceca17c00d4ed0601a18d8d2f96d8", + "language": "Python", + "lines": 387, + "truncated": false, + "block": 9, + "row": 11137 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/misc.py", + "sha256": "17b2c36fa3d02309e26302dcce1536a520321d9f5b9d3553d7223f39db98877c", + "language": "Python", + "lines": 821, + "truncated": false, + "block": 9, + "row": 12017 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/models.py", + "sha256": "a82818c94c369881f5a6899bb09dd842c32d38d660c89e011b03b93099d20b87", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 6, + "row": 27889 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/packaging.py", + "sha256": "235f77f0007b169adc54925de82d2f4a232e0956a39abc59179e6f5f98f46cca", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 6, + "row": 35466 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/parallel.py", + "sha256": "45917825d74f11655b9243c29277efa6a68b7e6dcf9aa77f001a021e6578957b", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 6, + "row": 36562 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/pkg_resources.py", + "sha256": "8f01f925588f7be2655cbbcb0b4f8049f4d309162f9b4bbd0b04067168f14ad2", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 6, + "row": 26246 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/setuptools_build.py", + "sha256": "c64f6c4418d4c8d4c7b3f4ef11679b556b3519f2cf376d3c333a525ebf4e93f0", + "language": "Python", + "lines": 173, + "truncated": false, + "block": 6, + "row": 41405 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/subprocess.py", + "sha256": "bb168fdc8ccf8816211b431b75f3cafee721640876eee677c0edeae6145f132a", + "language": "Python", + "lines": 281, + "truncated": false, + "block": 9, + "row": 10829 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/temp_dir.py", + "sha256": "f60b3737d1907955d15568c921a952a47d6e8fcc905cf4f36ab6f99f5fc7315a", + "language": "Python", + "lines": 260, + "truncated": false, + "block": 7, + "row": 663 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/unpacking.py", + "sha256": "3e2a186307d30a7fd57987abf34a2786b3bd6358207ada8e3d23aba06dfc6d14", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 9, + "row": 10644 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/urls.py", + "sha256": "5f38d0b0719dd980e6261a02a20b293d3aa1e8a979b4610d4473dcc234b4242e", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7302 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/virtualenv.py", + "sha256": "8914cafac0fa6d6a47a97719d0409f76914b59ab4c3871545422116b42fa1aed", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 6, + "row": 37589 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/wheel.py", + "sha256": "0ce21565a5cdedb30e01e304ab320e6471a5e0e14ef8a1ab12a05407ce3c0cfa", + "language": "Python", + "lines": 189, + "truncated": false, + "block": 6, + "row": 43838 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/vcs/__init__.py", + "sha256": "0a3cb11c281db75f65db58f4b491a243fe9893c9be2969904e1998be58ddd5ea", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6712 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/vcs/bazaar.py", + "sha256": "032fef37ef3bbd8484cc1a974f7455c25e34be5939ea3de3cbf01f41b323e2ea", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 6, + "row": 35676 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/vcs/git.py", + "sha256": "511533d644aa84386a26cafdba56854dec0ff198f07fba153cfeec91d8fd48c4", + "language": "Python", + "lines": 450, + "truncated": false, + "block": 9, + "row": 11502 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/vcs/mercurial.py", + "sha256": "d97dde232780590588d93c683d3fb1b95b03e9fc6bed84b21f0e0c47d116cf83", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 9, + "row": 9479 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/vcs/subversion.py", + "sha256": "94f7c2bbce352403111bf8d35ff4db459ac1a4a748779790f2deffc48ef0dcbd", + "language": "Python", + "lines": 329, + "truncated": false, + "block": 9, + "row": 11106 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/vcs/versioncontrol.py", + "sha256": "37ad1348c6d3afbf400f347ad410ab93c62881441c0419cd68b8093d37d7b1f7", + "language": "Python", + "lines": 715, + "truncated": false, + "block": 9, + "row": 12004 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/wheel_builder.py", + "sha256": "856eb7666001afae6b3a24910475eed63054744670e4b662c342da4016f3d252", + "language": "Python", + "lines": 360, + "truncated": false, + "block": 7, + "row": 4387 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/__init__.py", + "sha256": "802ad0c0f058d8e64179e76f28e2dd459dd6d4b21133ad1f1ba7789a05bffbd6", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 9376 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/appdirs.py", + "sha256": "33a218449b5d6609923c25c248c051074553dcff0c7456d60836d22eb07611b8", + "language": "Python", + "lines": 633, + "truncated": false, + "block": 7, + "row": 10004 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/__init__.py", + "sha256": "a49b40694c4eb0c3e7cad2350378ee009917603afc92b7529ec838620dce0448", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 6, + "row": 21732 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/_cmd.py", + "sha256": "511184d0aac0f3b41e9021b74863dab6548f4f9ef57594c38cd6be6575f7a437", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 6, + "row": 27599 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/adapter.py", + "sha256": "b12c1a49877ddc821f085538b4e3204a8e9bd8b0adfe0052690523f24b4914e0", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 6, + "row": 41040 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/cache.py", + "sha256": "d5f738c093fc1d8b75c9c9c95de130e690a97812f60aac71ea0f456f40180d64", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 6, + "row": 24468 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/caches/__init__.py", + "sha256": "fa01cd298bda783d243a4e4cef878eaec4a020a52d0ba8ba19f6e6ba01b0784a", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 6, + "row": 20616 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/caches/file_cache.py", + "sha256": "9d854ab09b5787a8095ef767d625b2ae1c6f930a50acaf9e2a8311cee8b090a9", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 6, + "row": 39193 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/caches/redis_cache.py", + "sha256": "1f17a5329342a3e758af67e2243c0cde1861466c5462d079b579b51a90004f86", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 6, + "row": 24742 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/compat.py", + "sha256": "90736f31176deacfd7c2aabff6a266afda2edf060c38c50cc4f3dcc0dc53f0c7", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 6, + "row": 23843 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/controller.py", + "sha256": "096117de979d20cf6ceb4b2e7f8cd93ed9bf26f5609efa203062bf3a2046e45f", + "language": "Python", + "lines": 376, + "truncated": false, + "block": 7, + "row": 6040 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/filewrapper.py", + "sha256": "bc008a3bc2e5ceefd95b28d5d45c67d4c0384c653ad0de4ddc64ab0057406364", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 6, + "row": 34180 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/heuristics.py", + "sha256": "045187277c90731bd98b37e8f742cb674e13fd9e574825ef168b6ba7b52cd2c7", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 6, + "row": 38979 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/serialize.py", + "sha256": "bc86b88efab8c7f29238b74421e7689275f669760742e8cb0c5578f85db50e7a", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 6, + "row": 45111 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/wrapper.py", + "sha256": "e4b5f4b89c2435052d612130dda1a61aef5663cc068a977cd6627c946d1dd0ce", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 6, + "row": 23822 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/certifi/__init__.py", + "sha256": "4ac99d9851e31c263854bb6ac29a7d3ff8ec39c02e1e3fb97395aaa04cfea058", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6162 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/certifi/__main__.py", + "sha256": "d64dc2afde6f0b1c464460e58eb5b7c0c76965d2f73617f4bb59fe936a9db026", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 6, + "row": 21482 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/certifi/core.py", + "sha256": "80e15dd331d8971e24aeb2c49fdf367ac3ad9b3ddd8e21b40454838608e5bdc2", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8426 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/__init__.py", + "sha256": "99665a5a6bd9921c1f044013f4ed58ea74537cace14fb1478504d302e8dba940", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 6, + "row": 36720 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/big5freq.py", + "sha256": "0ffccae46cb3a15b117acd0790b2738a5b45417d1b2822ceac57bdff10ef3bff", + "language": "Python", + "lines": 386, + "truncated": false, + "block": 7, + "row": 10791 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/big5prober.py", + "sha256": "901c476dd7ad0693deef1ae56fe7bdf748a8b7ae20fde1922dddf6941eff8773", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 6, + "row": 30651 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/chardistribution.py", + "sha256": "df0a164bad8aac6a282b2ab3e334129e315b2696ba57b834d9d68089b4f0725f", + "language": "Python", + "lines": 233, + "truncated": false, + "block": 7, + "row": 2286 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/charsetgroupprober.py", + "sha256": "1992d17873fa151467e3786f48ea060b161a984acacf2a7a460390c55782de48", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 9, + "row": 8984 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/charsetprober.py", + "sha256": "2929b0244ae3ca9ca3d1b459982e45e5e33b73c61080b6088d95e29ed64db2d8", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 6, + "row": 41551 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/cli/__init__.py", + "sha256": "01ba4719c80b6fe911b091a7c05124b64eeece964e09c058ef8f9805daca546b", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4956 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/cli/chardetect.py", + "sha256": "5cae73aa3506d9ae3ecba78b1d9f13858729e96594add96610bc4dca971cd921", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8368 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/codingstatemachine.py", + "sha256": "558a7fe9ccb2922e6c1e05c34999d75b8ab5a1e94773772ef40c904d7eeeba0f", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 6, + "row": 37659 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/compat.py", + "sha256": "e34cebeb0202670927c72b8b18670838fcaf7bc0d379b0426dbbedb6f9e6a794", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 6, + "row": 26864 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/cp949prober.py", + "sha256": "4d9e37e105fccf306c9d4bcbffcc26e004154d9d9992a10440bfe5370f5ff68c", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 6, + "row": 31125 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/enums.py", + "sha256": "0229b075bf5ab357492996853541f63a158854155de9990927f58ae6c358f1c5", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 6, + "row": 30124 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/escprober.py", + "sha256": "924caa560d58c370c8380309d9b765c9081415086e1c05bc7541ac913a0d5927", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 6, + "row": 38642 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/escsm.py", + "sha256": "46e5e580dbd32036ab9ddbe594d0a4e56641229742c50d2471df4402ec5487ce", + "language": "Python", + "lines": 246, + "truncated": false, + "block": 7, + "row": 3383 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/eucjpprober.py", + "sha256": "883f09769d084918e08e254dedfd1ef3119e409e46336a1e675740f276d2794c", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 6, + "row": 38090 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/euckrfreq.py", + "sha256": "fbb19d9af8167b3e3e78ee12b97a5aeed0620e2e6f45743c5af74503355a49fa", + "language": "Python", + "lines": 195, + "truncated": false, + "block": 7, + "row": 5675 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/euckrprober.py", + "sha256": "32a14c4d05f15b81dbcc8a59f652831c1dc637c48fe328877a74e67fc83f3f16", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 6, + "row": 30598 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/euctwfreq.py", + "sha256": "368d56c9db853a00795484d403b3cbc82e6825137347231b07168a235975e8c0", + "language": "Python", + "lines": 387, + "truncated": false, + "block": 7, + "row": 10839 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/euctwprober.py", + "sha256": "d77a7a10fe3245ac6a9cfe221edc47389e91db3c47ab5fe6f214d18f3559f797", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 6, + "row": 30594 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/gb2312freq.py", + "sha256": "257f25b3078a2e69c2c2693c507110b0b824affacffe411bbe2bc2e2a3ceae57", + "language": "Python", + "lines": 283, + "truncated": false, + "block": 7, + "row": 8804 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/gb2312prober.py", + "sha256": "806bc85a2f568438c4fb14171ef348cab9cbbc46cc01883251267ae4751fca5c", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 6, + "row": 30633 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/hebrewprober.py", + "sha256": "737499f8aee1bf2cc663a251019c4983027fb144bd93459892f318d34601605a", + "language": "Python", + "lines": 292, + "truncated": false, + "block": 7, + "row": 5850 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/jisfreq.py", + "sha256": "be9989bf606ed09f209cc5513c730579f4d1be8fe16b59abc8b8a0f0207080e8", + "language": "Python", + "lines": 325, + "truncated": false, + "block": 7, + "row": 9980 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/jpcntx.py", + "sha256": "3d894da915104fc2ccddc4f91661c63f48a2b1c1654d6103f763002ef06e9e0a", + "language": "Python", + "lines": 233, + "truncated": false, + "block": 7, + "row": 8470 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/langbulgarianmodel.py", + "sha256": "ae4f42269bb13b46ce6dba0972fea03605aea2c61999df2a10476ce72ec34bf6", + "language": "Python", + "lines": 4650, + "truncated": false, + "block": 8, + "row": 1031 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/langgreekmodel.py", + "sha256": "4beb8d4358a10bbe72841bd2bb1db880b159bf743272d3300ba3b12c9757f9bc", + "language": "Python", + "lines": 4398, + "truncated": false, + "block": 8, + "row": 1006 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/langhebrewmodel.py", + "sha256": "0f33cfe933c61bff8f57bb6ab29bbf77c76eb9eaa6eee37ee5e434687530d468", + "language": "Python", + "lines": 4383, + "truncated": false, + "block": 8, + "row": 1001 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/langhungarianmodel.py", + "sha256": "46d247ec365db26687ab22b8e8a9269e4e70407889c093cf252aaa225a5e6517", + "language": "Python", + "lines": 4650, + "truncated": false, + "block": 8, + "row": 1016 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/langrussianmodel.py", + "sha256": "4c7a893a14b189341c1dba03352739ca87dcda4a175d01471728edcae9ed51f3", + "language": "Python", + "lines": 5718, + "truncated": false, + "block": 8, + "row": 1108 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/langthaimodel.py", + "sha256": "475c171e750cb5e8e9c342671ff24ef177586ac304eb08d5aa9d733fb4ca2e08", + "language": "Python", + "lines": 4383, + "truncated": false, + "block": 8, + "row": 1019 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/langturkishmodel.py", + "sha256": "adfc1a9d3a6d4f04b2704e3e3fe41ab0f9b377e5d56207afcadce3944cc106ef", + "language": "Python", + "lines": 4383, + "truncated": false, + "block": 8, + "row": 981 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/latin1prober.py", + "sha256": "4b6228391845937f451053a54855ad815c9b4623fa87b0652e574755c94d914f", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 6, + "row": 42099 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/mbcharsetprober.py", + "sha256": "011f797851fdbeea927ef2d064df8be628de6b6e4d3810a85eac3cb393bdc4b4", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 6, + "row": 37155 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/mbcsgroupprober.py", + "sha256": "87a4d19e762ad8ec46d56743e493b2c5c755a67edd1b4abebc1f275abe666e1e", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 6, + "row": 31876 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/mbcssm.py", + "sha256": "498df6c15205dc7cdc8d8dc1684b29cbd99eb5b3522b120807444a3e7eed8e92", + "language": "Python", + "lines": 572, + "truncated": false, + "block": 7, + "row": 9917 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/metadata/languages.py", + "sha256": "e35b4bab778b4ab0446c455542954616af4aee8d659fd6f51e9635974842510a", + "language": "Python", + "lines": 310, + "truncated": false, + "block": 9, + "row": 11799 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/sbcharsetprober.py", + "sha256": "9e6c8ccaec731bcec337a2b7464d8c53324b30b47af4cad6a5d9c7ccec155304", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 9886 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/sbcsgroupprober.py", + "sha256": "86a79f42e5e6885c83040ace8ee8c7ea177a5855e5383d64582b310e18f1e557", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 9, + "row": 9202 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/sjisprober.py", + "sha256": "208b7e9598f4589a8ae2b9946732993f8189944f0a504b45615b98f7a7a4e4c4", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 6, + "row": 38150 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/universaldetector.py", + "sha256": "0e96535c25f49d41d7c6443db2be06671181fe1bde67a856b77b8cf7872058ab", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 7, + "row": 4956 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/utf8prober.py", + "sha256": "21d0fcbf7cd63ac07c38b8b23e2fb2fdfab08a9445c55f4d73578a04b4ae204c", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 6, + "row": 35038 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/version.py", + "sha256": "0380882c501df0c4551b51e85cfa78e622bd44b956c95ef76b512dc04f13be7f", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 6, + "row": 21393 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/colorama/__init__.py", + "sha256": "a42744aebcb32d2cc35b93fead13c194f2ea6c1b4844d241e9c320a1e267b399", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6473 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/colorama/ansi.py", + "sha256": "4e8a7811e12e69074159db5e28c11c18e4de29e175f50f96a3febf0a3e643b34", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 9, + "row": 8242 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/colorama/ansitowin32.py", + "sha256": "c95ec212609bd7d3239c928e0d9104bcc1ff7e76c98709e9ce8e2cc59b865e60", + "language": "Python", + "lines": 258, + "truncated": false, + "block": 9, + "row": 10899 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/colorama/initialise.py", + "sha256": "3e9ae8bc3371313aefa0d1c570bd8d663a47d97cc373c04bc4bc6212b7d49789", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 6, + "row": 31404 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/colorama/win32.py", + "sha256": "6c9f0897d8f0681379049f1b98de85a18675418b8c2afda3f1f1ab5e1ed3263c", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 6, + "row": 42168 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/colorama/winterm.py", + "sha256": "db2ff66fb66cbf7e1f780b0febb98b39573e060ab9d667581a8e7bd55a6b96b3", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 6, + "row": 44070 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/__init__.py", + "sha256": "def780936acfce7381da0b0aead8db6e1d1340c9861393fcd9e13dc17aba3489", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6724 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/_backport/__init__.py", + "sha256": "6ea4bf753387eae5bd88681dd2ecdfa4f8e8eaf678c693d9ee4c9f649daf35ac", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 6, + "row": 21602 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/_backport/misc.py", + "sha256": "29679c20d75b14d3b148e3f57c617af340899da0ba4b87c146012d6984f0d228", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 6, + "row": 25384 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/_backport/shutil.py", + "sha256": "217fc6d8d3eac1e70989b9080e37b4e1baaed31a4791f490d8668674456a3396", + "language": "Python", + "lines": 764, + "truncated": false, + "block": 9, + "row": 12091 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/_backport/sysconfig.py", + "sha256": "0501c595bea9b9b0a5fddbd3d4d8edcc8b61ca5a1f8ca8aca31db7f6cb438345", + "language": "Python", + "lines": 786, + "truncated": false, + "block": 7, + "row": 10181 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/_backport/tarfile.py", + "sha256": "221a7bad745c8db20ac3c08e9bdc1278f57d0111976d217d8065c0327d90f8a5", + "language": "Python", + "lines": 2607, + "truncated": false, + "block": 8, + "row": 952 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/compat.py", + "sha256": "003039eb1880c5aaf7994eaa7a694184d6ecac53e8b174613b8e11cec6c93ea9", + "language": "Python", + "lines": 1120, + "truncated": false, + "block": 9, + "row": 12413 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/database.py", + "sha256": "2a5d18bcf40a73839ca558bb939705ce2c9d335c4e2bc8aa7712c65e06d91d5e", + "language": "Python", + "lines": 1339, + "truncated": false, + "block": 9, + "row": 12500 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/index.py", + "sha256": "4972b3a5008445cb71603329fce2de7b67f42747b5f5984674222832551f5103", + "language": "Python", + "lines": 516, + "truncated": false, + "block": 7, + "row": 8926 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/locators.py", + "sha256": "73d13870311a709fee29bb84e41a805687285a9eabb2e0464e488d0d0ab7cd5e", + "language": "Python", + "lines": 1302, + "truncated": false, + "block": 8, + "row": 361 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/manifest.py", + "sha256": "9d0121626828ade681673c85cf062c5f124046eddfa38124ba7535eb7535ea21", + "language": "Python", + "lines": 393, + "truncated": false, + "block": 7, + "row": 6432 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/markers.py", + "sha256": "e807377027c504445ec621125883979a0f9aa483fc9767ac69f3525f728ccbef", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 6, + "row": 39852 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/metadata.py", + "sha256": "cf628fcb7877b5c0e76fd5ecee702a4393b3d1baa358050598a59c14a468a1d8", + "language": "Python", + "lines": 1056, + "truncated": false, + "block": 9, + "row": 12382 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/resources.py", + "sha256": "d851afd191c5d782978cb2252f447df7597241019c7b0392e2627ee67f895677", + "language": "Python", + "lines": 355, + "truncated": false, + "block": 7, + "row": 3596 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/scripts.py", + "sha256": "fcc023dec32ebf9ea4b8cf05b222165ea6d3d209ae98f19a391fdab4ece7e1ae", + "language": "Python", + "lines": 419, + "truncated": false, + "block": 9, + "row": 11651 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/util.py", + "sha256": "7f68d908fadc2c2b7a2dc9c2d20532f85babeb4b570fcade03b938ac3a47303c", + "language": "Python", + "lines": 1761, + "truncated": false, + "block": 8, + "row": 559 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/version.py", + "sha256": "fe7ec5ea3baf40601c9fbebd13f4876bb7ce71fe44465115ca627f1233d1c06c", + "language": "Python", + "lines": 736, + "truncated": false, + "block": 7, + "row": 9486 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/wheel.py", + "sha256": "bfa0e7c13aa1347c2b11516bf3f61e8935ba1b87ed3ff7afb32c0d82b99d6f6a", + "language": "Python", + "lines": 1018, + "truncated": false, + "block": 9, + "row": 12410 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distro.py", + "sha256": "c713088766b72a68a9a5e5841f3ca74dd1d3dff8d9334a3ea68b3474058944e3", + "language": "Python", + "lines": 1230, + "truncated": false, + "block": 7, + "row": 11861 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/__init__.py", + "sha256": "058cdc282a9e1228b9db10eba8116bba19e6b66922b875c5c8587e720950f269", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7209 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/_ihatexml.py", + "sha256": "89f3b017ba57aa6c938485dcddba1673deace0c0decea46b455a7b1700d8505b", + "language": "Python", + "lines": 289, + "truncated": false, + "block": 9, + "row": 11605 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/_inputstream.py", + "sha256": "8c4acd012325920b3b32938cf557bf55d2c3272145c1e0232ee855bad673df75", + "language": "Python", + "lines": 918, + "truncated": false, + "block": 9, + "row": 12279 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/_tokenizer.py", + "sha256": "d389a0036b0d4e78aeb65d9fc45bfe7a2e5b9ece2245a3f15575c787f1eb57fe", + "language": "Python", + "lines": 1735, + "truncated": false, + "block": 9, + "row": 12596 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/_trie/__init__.py", + "sha256": "9ea7e03bdd74df6f411152794f8a6c57042d8ddda2272117436f97f1cd58c705", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6363 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/_trie/_base.py", + "sha256": "09ac9b63232ba3cb844506236f2dad4de4946ad9d60df5aba1437d37b7adcb9c", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 6, + "row": 25640 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/_trie/py.py", + "sha256": "c179902eb6517f833258dca0d26de1f359bd22784b47b189d34da6208661fbca", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 6, + "row": 30732 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/_utils.py", + "sha256": "0f1f402a7b64b118c54f5bde063ec8dfada97f93a021a4f4ce0970ab8dd19df5", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 9, + "row": 9437 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/constants.py", + "sha256": "2e5fb2ccb53f8dc8f2008fe1e7bce4a99eda416139b79c40e32fe3420a14521c", + "language": "Python", + "lines": 2946, + "truncated": false, + "block": 9, + "row": 12613 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/filters/alphabeticalattributes.py", + "sha256": "95589973624c09c9578bfe6076ebe6773ad1c6d3b95e8f4e3676c70550acca45", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 6, + "row": 25083 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/filters/base.py", + "sha256": "cfe214f590188e9b15b2a995b7b92e582eb78d1d7584332be8256bbee6a8f16d", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 6, + "row": 21655 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/filters/inject_meta_charset.py", + "sha256": "7a00d75041d79801bde74e31cf42ba00b0e0624bd4ac2daad7961455e3655508", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 6, + "row": 35624 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/filters/lint.py", + "sha256": "8e4eaae7ac58d288e261fbe974ff8e6529bd793a9c01d46a842a0f22d7a63d80", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 6, + "row": 37821 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/filters/optionaltags.py", + "sha256": "f25593ef927468138798f81f9aa4c749f3e93cca74d53f3834abb409179dc5c1", + "language": "Python", + "lines": 207, + "truncated": false, + "block": 7, + "row": 3457 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/filters/sanitizer.py", + "sha256": "9baa069a40619060279f69d5e83e2113bf12099e961272bdaca759077b970487", + "language": "Python", + "lines": 916, + "truncated": false, + "block": 9, + "row": 12134 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/filters/whitespace.py", + "sha256": "f1e5aa671778502e33945196ea2c98e9ffb6bae4fca4e09200b737219b7bfede", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 6, + "row": 26984 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/html5parser.py", + "sha256": "6a7afe697adefc899fae4437e5cfeb7ed297c42f34bc909110a7b4e93ab5e470", + "language": "Python", + "lines": 2795, + "truncated": false, + "block": 9, + "row": 12664 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/serializer.py", + "sha256": "fcfa6f719174edcc04ef1afdb8a919aa1e5fe1411a23c96d094db13c9cda4e99", + "language": "Python", + "lines": 409, + "truncated": false, + "block": 9, + "row": 11535 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treeadapters/__init__.py", + "sha256": "034ad8e605c87b86c93a248644efe3fed1619e04413bc4193f33ed3f0e5d173a", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 6, + "row": 23758 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treeadapters/genshi.py", + "sha256": "087dbba40b032a6bb864690052bc2dcbbbb429ab862c26512cf33368edcce6fa", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 6, + "row": 30434 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treeadapters/sax.py", + "sha256": "04a4bcc284139ca8aa79f7c7b310a152a2f8ab6651ff06f97dcf4c277cd00bcb", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 6, + "row": 30736 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treebuilders/__init__.py", + "sha256": "032b12272bcf7e290230cb1356f6b1c2480389e10b0f975f47c149200baaee16", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 6, + "row": 37665 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treebuilders/base.py", + "sha256": "cfea39d6fb7daff9762031b9222a1338a1b36677b8172dff15cfbbcedace8782", + "language": "Python", + "lines": 417, + "truncated": false, + "block": 9, + "row": 11407 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treebuilders/dom.py", + "sha256": "db6c216f40bbd735c8b1a8b999a9a0eaacc11228a070122f683cb802cc376add", + "language": "Python", + "lines": 239, + "truncated": false, + "block": 7, + "row": 1800 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treebuilders/etree.py", + "sha256": "c39645a4a93a6c0c67af00f6fc1ac5e44542eefcf3d0bdcb322f52c6b6dcffcc", + "language": "Python", + "lines": 343, + "truncated": false, + "block": 9, + "row": 11217 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treebuilders/etree_lxml.py", + "sha256": "f60a838ecf88c6c3e10586b9729befd85675299946f371a2baccb69459af2241", + "language": "Python", + "lines": 392, + "truncated": false, + "block": 9, + "row": 11431 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treewalkers/__init__.py", + "sha256": "3813ed7354d4e661b2cb5f100ccc4a132604cf4c3115450d8f9bf4f978266216", + "language": "Python", + "lines": 154, + "truncated": false, + "block": 9, + "row": 9746 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treewalkers/base.py", + "sha256": "a2e88eb2e4b3bc8d0a8337563fc3e5c4869236cf5f6a585b8a29c011cfd42096", + "language": "Python", + "lines": 252, + "truncated": false, + "block": 7, + "row": 53 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treewalkers/dom.py", + "sha256": "107c8547c0fc958367c8353d971fc82a2815251c9e7141ae6b498e8bb1c1ba47", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 6, + "row": 28502 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treewalkers/etree.py", + "sha256": "c68d4be66f55b647e91492b4a459a42d56a386a618562b15667de4f646293e42", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 9, + "row": 9294 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treewalkers/etree_lxml.py", + "sha256": "fdbd0b01558b715bbd59a53ffb0dc3f1fd08452a426e37faebb57edcd45d853c", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 9, + "row": 9963 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treewalkers/genshi.py", + "sha256": "e03d8f1026799f764ddeabb78cc97dc98ec1f358e7400a414125657da22e61b0", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 6, + "row": 33272 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/idna/__init__.py", + "sha256": "f4db7bc69c9eb770e63ab3d41a8a03740c261d966ed6a500cb611a27dde41a24", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 6, + "row": 20450 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/idna/codec.py", + "sha256": "e1154c86a16ab898321812b2978d0046a7200f39030d7654bf297510e0912c51", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 8540 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/idna/compat.py", + "sha256": "83eecf878e67cc82deffbc6fc5d6d379bac766ae26416c48387d6b8cc73ac6bb", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6465 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/idna/core.py", + "sha256": "55d1464328a2b7578c294436c7498d5e819386b5e5472a74ef498f0f22d7f588", + "language": "Python", + "lines": 396, + "truncated": false, + "block": 9, + "row": 11104 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/idna/idnadata.py", + "sha256": "725e31f512ddc3564cb4411bbcac00b17f8877701d2233b95371daa0a33a546b", + "language": "Python", + "lines": 2050, + "truncated": false, + "block": 9, + "row": 12426 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/idna/intranges.py", + "sha256": "4d8d65a7164841610fead36a8d9905039860a0c58e8f53819a7506f22853f3b1", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 6, + "row": 30603 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/idna/package_data.py", + "sha256": "931a6d16f799dfbcdb3d298a53b28c100f0f8bb877fac335fa9d9a826d8fa422", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 9, + "row": 6091 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/idna/uts46data.py", + "sha256": "e0264407a65082648d2004c19f657fc5d5bd3c481539700e611cc27901ac2bf1", + "language": "Python", + "lines": 8356, + "truncated": false, + "block": 9, + "row": 12695 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/msgpack/__init__.py", + "sha256": "da027072c4c8680b4233418c8b6ad4fbf63a9082de790baa464ad0db68d200d7", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 6, + "row": 26330 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/msgpack/_version.py", + "sha256": "745474de80029e3e25b0a775467c03ec13cc89523f14cca074e2f54ce044c3f5", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 6, + "row": 20136 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/msgpack/exceptions.py", + "sha256": "7424d67a2f1da64accb100dc8d093be004e5f47b08047d326edf3338f36a3187", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 6, + "row": 26099 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/msgpack/ext.py", + "sha256": "e25df9e98e2c54472f0a56b6761fdc2f9eef87818c8597dade4b961c51d8cfa0", + "language": "Python", + "lines": 193, + "truncated": false, + "block": 6, + "row": 43485 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/msgpack/fallback.py", + "sha256": "469bf52dd7b2f1ff2e7919d0ce70f80112819fd7713363f2c153645c8f0811e1", + "language": "Python", + "lines": 1087, + "truncated": false, + "block": 7, + "row": 11468 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/__about__.py", + "sha256": "8f807b20c312aa95276337187791f95999482d77af0fb666fe7f658ff4d1393c", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6846 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/__init__.py", + "sha256": "e9e9dba795e045f8c18ec23df9b9f4d078c77f94c7db53c330e2a4256f31c3ec", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 6, + "row": 23120 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/_compat.py", + "sha256": "31776c1a9484fd6f99ac7a02f3b6a7748e0b576140c14ec72cbf9e1defc28e15", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7180 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/_structures.py", + "sha256": "a339025fc43c7f6a84d4489cdd8890e1bb8355f833da261ebd8f5eed1db2de26", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 6, + "row": 31920 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/_typing.py", + "sha256": "560034000bec73deca0799c5f3dce8b9d3b208c12c57b165697cd96d8a849330", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7766 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/markers.py", + "sha256": "f033a7d5cee867f0f248194ba26ffda38f46ce86d519837cfa4a4afe7b23f284", + "language": "Python", + "lines": 336, + "truncated": false, + "block": 9, + "row": 10715 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/requirements.py", + "sha256": "307a9ffc52a28470b4564381eb6654754c86f289042fdec3e17cbf8cad72152d", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 9, + "row": 9508 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/specifiers.py", + "sha256": "45ac50f892b20aa2394019ba803bdba19d8aea38cb55dfa9c6ad24bd87f6f247", + "language": "Python", + "lines": 864, + "truncated": false, + "block": 9, + "row": 12276 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/tags.py", + "sha256": "04c10bff75b713c9d72bf017016aa695871cb2fa339c52a44c19133d1e3c0c1f", + "language": "Python", + "lines": 866, + "truncated": false, + "block": 9, + "row": 12205 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/utils.py", + "sha256": "e6f531c025584a668d24581deca682069c475d037cf4a22f44bbc2b03cdaa349", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 9, + "row": 9230 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/version.py", + "sha256": "b7b169b192a60e770c9fa106dbc744bbfe4d05951af7f1d5a221be7ec0e8de87", + "language": "Python", + "lines": 556, + "truncated": false, + "block": 9, + "row": 11551 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/__init__.py", + "sha256": "9a3bbd7a51472c4509db7ad4e59a5d8fc9d139d634563ddba78660bc14ece9b8", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6378 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/build.py", + "sha256": "678f4299115a7d7ecd8e804ca1d8a26f04186bf118cf7134177d5bec3e5656fb", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 9, + "row": 8790 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/check.py", + "sha256": "f0b24bb5f67df7301c578bca2756bea1d331836b042260fb44c360fc4adefb56", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 9, + "row": 9870 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/colorlog.py", + "sha256": "4e4f40b989bf70b17704a4c1a124c9b7d6d1af29f4685a232103b06df5544f14", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 6, + "row": 39054 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/compat.py", + "sha256": "33ee6ce15369f2b8f24fbe9967f89b9cf0f8e03615cd2425c821076b28ed0cfc", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 6, + "row": 24330 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/dirtools.py", + "sha256": "da69009002f4991cff7a56058d12ae7a44c9562a47d734e7e2d6dfd440debfce", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 6, + "row": 26402 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/envbuild.py", + "sha256": "b332941653b9d17d5a8507d7c33e210fd576544fdbcfd30b54f21e89db05a38c", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 6, + "row": 43407 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/in_process/__init__.py", + "sha256": "3325a8022f091dd701bfbc97b96a544950036f1e8b481f6b661ee44c881d03c6", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6703 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/in_process/_in_process.py", + "sha256": "5eb28e4d44497626b947b8b78bf390992f3d2c04855c4dc74177d7eb7a990481", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 7, + "row": 1252 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/meta.py", + "sha256": "f269cce650e74f8cd742905396225b4467deb07ee28a81f0a336c3c402cf4bd6", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 6, + "row": 33905 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/wrappers.py", + "sha256": "41865f3759d6a2ae19da4ad8f945f5e092c0c6474dc2e8d88d119feea15cf75e", + "language": "Python", + "lines": 318, + "truncated": false, + "block": 9, + "row": 10969 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pkg_resources/__init__.py", + "sha256": "5e91817ef4bd7da7c0e9b9b9af1eef9f1771b3bcaaca873f367a73280a6427ae", + "language": "Python", + "lines": 3296, + "truncated": false, + "block": 8, + "row": 1047 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pkg_resources/py31compat.py", + "sha256": "09193c7e488f4432ec6e2e6965c2ac1c8fff3db9a1ffde0bf26afd432f406f65", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 6, + "row": 23113 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/progress/__init__.py", + "sha256": "7dc6d0417a399e9d82a10ca1487e57a6b9227302d934b78f477b886a1ce748ed", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 6, + "row": 40970 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/progress/bar.py", + "sha256": "42e0ee54d7265e0a71b4db713b416aef6c4a8a0c4005a566c58181c3827767f1", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 6, + "row": 35330 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/progress/counter.py", + "sha256": "3339f206bbcf5ab3a519ee0c64094651bf6adda3837bafda35878013f54da180", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 6, + "row": 28200 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/progress/spinner.py", + "sha256": "93c25b0d6f784f4f965ee5dfc5920585da0d3d8a778df9e95ea0677d1bf97c6b", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 6, + "row": 28266 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pyparsing.py", + "sha256": "571e297e104718420c8db652173e8fee68881be000e5516ebba547fde064a0b4", + "language": "Python", + "lines": 5208, + "truncated": true, + "block": 8, + "row": 1188 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/__init__.py", + "sha256": "89bee74630da75b08c39e5f6b0c40b71b5f3cbdf361e82916362c3fe05aac0f3", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 9256 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/__version__.py", + "sha256": "93827c735c85445cf0196c2537b9a268339c945b5b708b351a59e64f5ed86d74", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6614 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/_internal_utils.py", + "sha256": "671dcf9c451c7327ec07e89ed759d95405bca82949cb4831d6a34c13bae04f5f", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 6, + "row": 26191 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/adapters.py", + "sha256": "7be6e6284029355a85772971b8c2497e2687765992ff3856848304ce51ef1ae7", + "language": "Python", + "lines": 533, + "truncated": false, + "block": 7, + "row": 9060 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/api.py", + "sha256": "3e51ccf874f73d0e65cae7e8786995fa7271462ed49d4c86561ece57b07d5d5e", + "language": "Python", + "lines": 161, + "truncated": false, + "block": 6, + "row": 44165 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/auth.py", + "sha256": "38ca092152b244bcbd4c7afdd72f2bc72b19b9c9703c1f8ad57835cc1a265214", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 7, + "row": 3122 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/certs.py", + "sha256": "9d7455abd0ed1a6bffd4061bc234eef54ae001c749bf4e59be435e6a82ce6716", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 6, + "row": 22585 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/compat.py", + "sha256": "2d05ae091e2a5e4eb0efea90a295f2cf458d1d47400f8d24d262a768011fd7e8", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 6, + "row": 32019 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/cookies.py", + "sha256": "63e6ca5fa4ef5b716762513a02ed125ed55559c68d745bee030431c3e1b48932", + "language": "Python", + "lines": 549, + "truncated": false, + "block": 7, + "row": 8067 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/exceptions.py", + "sha256": "77d7c9270f1814107d5731bdaa1bf12ee3b1e9b7b773f0f06dc93e75550401cb", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 9, + "row": 8619 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/help.py", + "sha256": "4893d57285dea3b29f2b803124de5e1554028ebd229bceed5369fbb9b2ec92c5", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 6, + "row": 37628 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/hooks.py", + "sha256": "411786cb2d1b45caf9ae4c02b8e6cd6a46d8b1cec492229e0701b8a877a4af64", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 6, + "row": 24205 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/models.py", + "sha256": "52491a56e535b5cf81298078d5d76cdf9b1a8aca13a5a609d980421591047e13", + "language": "Python", + "lines": 956, + "truncated": false, + "block": 9, + "row": 12316 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/packages.py", + "sha256": "9e32665627d8e1a49cb6e5b73cfe441510b18c4c0c4433ba27f7de1b674a5ac2", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 6, + "row": 23844 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/sessions.py", + "sha256": "06c9d1fb36082e0a05cc9eb2ab84fc86dfe2d0fc303c6540c56c56695e5d7078", + "language": "Python", + "lines": 781, + "truncated": false, + "block": 9, + "row": 12224 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/status_codes.py", + "sha256": "813efd3dbb3f7108c1829f9fbeb520835767d8340edf66c38f84c89e39cc3d27", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 6, + "row": 39293 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/structures.py", + "sha256": "9ac02dafd9aad49c4777e251ca220b7dd165a5b270bef16e3f7adf5104ff4311", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 6, + "row": 35824 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/utils.py", + "sha256": "fcaf4082437a79f3def9afb3819bab5f376ce4f042d02cc39328c0136a024054", + "language": "Python", + "lines": 992, + "truncated": false, + "block": 9, + "row": 12233 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/resolvelib/__init__.py", + "sha256": "41602a344ae3c6a10c2a5f8051c717cf5d1a08a5663be5a65afc5497740e9456", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 6683 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/resolvelib/compat/collections_abc.py", + "sha256": "bb2f31519f8d0c4c3dd7ab6e8145e6f0783008688c3b47fe45c767a647d77ceb", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6395 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/resolvelib/providers.py", + "sha256": "6dfcc50d977b52a924012ee550cfc77986c0f87ce329f0e595efe99ffefdbe2a", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 9, + "row": 9714 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/resolvelib/reporters.py", + "sha256": "850bef5eeb8404ec8458ef0a0df2ec58a5635f9e5414c014c0ed1864c369cc0c", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7401 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/resolvelib/resolvers.py", + "sha256": "3fa6aafbba58e44ef344e6f4cd4516a85207100f4b9b4316b31fdb617cd48370", + "language": "Python", + "lines": 474, + "truncated": false, + "block": 9, + "row": 11660 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/resolvelib/structs.py", + "sha256": "67a9b80a42899561f864829e944b0a35e66a293bf2bb1e21a81373638919ccba", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 9, + "row": 9275 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/six.py", + "sha256": "53867fcafe77e16e423728d8f62f15d4e5d8d928c09f2f32d8be6f0cb8614e13", + "language": "Python", + "lines": 982, + "truncated": false, + "block": 7, + "row": 11102 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/__init__.py", + "sha256": "eaa4a33760490edf3ae1bea7c45a1a9696c22d01e20f68980259d44bd756492c", + "language": "Python", + "lines": 523, + "truncated": false, + "block": 9, + "row": 11592 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/_asyncio.py", + "sha256": "e82e127eff4839461fd7ed2fb88a04e8e19b989ac9cb01f4f98b25af199bc4ac", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8421 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/_utils.py", + "sha256": "5b59ee8c7ba6d5ff62e114293928eab10a3dfe642d694b4dce75c09901ec2f6f", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 9, + "row": 9299 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/after.py", + "sha256": "28d222d964fcdebe1ea80dd069730ad735d0ce46cb8151e3e6e45a9d8e8769b3", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7352 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/before.py", + "sha256": "07da405e7ebf27550acf04cbf6716d4693a1360f2ce6f1928b86ea9f1e3e95a0", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7203 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/before_sleep.py", + "sha256": "95910c1cd685466742730b3732887810e67dcdea38311c6c91d894b9dbcdbaf6", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7733 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/compat.py", + "sha256": "747a272642651f00f6726a8bad81d85344ddce6d9b9f5fbbe90652b7a3827a6c", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6855 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/nap.py", + "sha256": "ed556e74e4e6bafffe0bf5c996f8c67201db57afc0d87973ca6697bbcbe3d5df", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7330 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/retry.py", + "sha256": "c6c90b19ad7912c3613cf3a621470a4bb0aa8da440b56c4614d3cd4638f3f545", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 9, + "row": 9638 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/stop.py", + "sha256": "e1c8d27bf60f49ac33ea223e4010cdd3115f13fce52af8e1170c76d599720f61", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 8187 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/tornadoweb.py", + "sha256": "ab75d95b603d464cb50615106cd1c5eb584cd445d0e7b740ef0c4f9e548ec77b", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7689 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/wait.py", + "sha256": "140a087c851235fe4e589613ee7863142d2e3958a31cc05de7a0094722cddb7d", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 9, + "row": 9840 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/toml/__init__.py", + "sha256": "918818cde861531d5c72db2ea6b9a310ac2749d990782e77713c62ee7c50ae4a", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6867 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/toml/decoder.py", + "sha256": "75e0cf42aa63f76486ea902dc0b6e0287ac8b25cbb840646f94ea0db2ee1c867", + "language": "Python", + "lines": 1057, + "truncated": false, + "block": 9, + "row": 12381 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/toml/encoder.py", + "sha256": "b417bddff181db52b9d939526cc898b867881971fbd05d96cc083e9487d5a24a", + "language": "Python", + "lines": 304, + "truncated": false, + "block": 9, + "row": 10814 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/toml/ordered.py", + "sha256": "516b791246bdd0859505876f2e06393d79e405c558a478e7c3d4faeeb33ce53f", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 6, + "row": 22134 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/toml/tz.py", + "sha256": "fb9be0f30920fdab67562d939c4bde7b121513b4ff171055afffb65957ced680", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 9, + "row": 6828 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/__init__.py", + "sha256": "8f7cb31c86e65bb092f8829027df8f3d07ff60a3bc10e01ecbfacc5b4511eeeb", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8378 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/_collections.py", + "sha256": "469d6657206073f52501ca7a3376add6c909057479278dcd6b0453bd6da0fd76", + "language": "Python", + "lines": 337, + "truncated": false, + "block": 9, + "row": 10930 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/_version.py", + "sha256": "d818e4fdc078f7ddb53d3bdeade5a9f194773612cda02300c874863fe39eb0b9", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 9, + "row": 6211 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/connection.py", + "sha256": "abebdffd333733245b65c167dfe5422990527f4a048468efec115e666ffb930e", + "language": "Python", + "lines": 539, + "truncated": false, + "block": 9, + "row": 11759 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/connectionpool.py", + "sha256": "20aa1eb89658f580189b418ae2af8c5c08725d6d0cfc59ef69b61a36c0c847e1", + "language": "Python", + "lines": 1067, + "truncated": false, + "block": 9, + "row": 12358 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/contrib/_appengine_environ.py", + "sha256": "6c36f2384856d8228b25c42a00a032ac41cdf9a925b321c52aaeaf17c645b269", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 6, + "row": 25310 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/contrib/_securetransport/bindings.py", + "sha256": "791cb5323fb0a60eec47af8e4af9d25788d46e3313e3ae1d2cdfc25b16c8455c", + "language": "Python", + "lines": 519, + "truncated": false, + "block": 9, + "row": 11678 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/contrib/_securetransport/low_level.py", + "sha256": "96021db12c9ca9f0745e6e41889cd719e20a4fbc9b0903053c902091cc0f6b5b", + "language": "Python", + "lines": 396, + "truncated": false, + "block": 9, + "row": 11326 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/contrib/appengine.py", + "sha256": "966f3a5e368e23b6a36e89ec37424b0347249204855a183158a2d6fd89ade2c2", + "language": "Python", + "lines": 314, + "truncated": false, + "block": 9, + "row": 10964 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/contrib/ntlmpool.py", + "sha256": "e88f79875ffbd5fcf19a831236d634801f259f20a856d3ff0e9a851a3d787dd5", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 9141 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/contrib/pyopenssl.py", + "sha256": "92a9bd497e21ffa87be90c060c188d43b8be92d299ba766ec734d58e3b470eda", + "language": "Python", + "lines": 509, + "truncated": false, + "block": 9, + "row": 11616 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/contrib/securetransport.py", + "sha256": "3041076b762a1bc89f0cf606d203b5d82d6d66ed88f87a86178942e7770714f8", + "language": "Python", + "lines": 920, + "truncated": false, + "block": 9, + "row": 12315 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/contrib/socks.py", + "sha256": "0dc463336974ad0308ca162b37aafeb6756463a6530f11c994cf3fbac0241820", + "language": "Python", + "lines": 216, + "truncated": false, + "block": 9, + "row": 10155 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/exceptions.py", + "sha256": "d0c9e7a372874cd7d745f63beb7f0db9f38f9146fa9973a6f8baa3fb8c76c3c0", + "language": "Python", + "lines": 323, + "truncated": false, + "block": 9, + "row": 10461 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/fields.py", + "sha256": "92f2c30a0fc9987d652e3514118fc52d2f14858ee106f0cfb951136d8f2676b3", + "language": "Python", + "lines": 274, + "truncated": false, + "block": 9, + "row": 10553 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/filepost.py", + "sha256": "e5bfeaaa04475652fbb8bb5d018073061f861e653901f255b7fd8dd174b73de6", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 8192 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/packages/__init__.py", + "sha256": "87804b843e2d2da071d5a75a0ed2977eea6c82a634c162d76ff7f5ff256557a0", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 6, + "row": 20722 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/packages/backports/makefile.py", + "sha256": "9dbcedde2d1a80f54fd3b8eaaa08e16988cc9ae022fd6e44d04cb0662bd53bc1", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7451 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/packages/six.py", + "sha256": "69dc78cfe78cfc3d15beed0822a573140090feec7d97ae32ec391211f6f1083b", + "language": "Python", + "lines": 1021, + "truncated": false, + "block": 7, + "row": 10946 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/packages/ssl_match_hostname/__init__.py", + "sha256": "ce9a5ecdd1107691ac61eac8ea657a31f518cb8f79255e2670e582fc681b9635", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6878 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/packages/ssl_match_hostname/_implementation.py", + "sha256": "e9d67eab4ef883b5e1b09dbb3050a091cb7c895359077b0c66f2a17fe294572d", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 9, + "row": 9731 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/poolmanager.py", + "sha256": "c21ce55fa51312038330e0b2d190cc50e351042cf9c3220cf19f68a57018f8b9", + "language": "Python", + "lines": 536, + "truncated": false, + "block": 9, + "row": 11816 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/request.py", + "sha256": "645488a97d02e968b38b179c0a1677fe8932bbb044bf4959bb5553d2cea1e123", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 9, + "row": 9825 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/response.py", + "sha256": "846846061ed3904921fc8420e42d56ff1b8f36b8082afe415173f213eab42ee1", + "language": "Python", + "lines": 821, + "truncated": false, + "block": 9, + "row": 12171 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/__init__.py", + "sha256": "2449929a6aaa2f26b0f0fe75814226661f06c20f62d7349ef83a2a022b67da77", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7205 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/connection.py", + "sha256": "fc8f99a05e7cc572cb8e8f90e4819a26b331cb6216fdec48f0af4ef69abba29d", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 9431 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/proxy.py", + "sha256": "1468a90049ef66d7b295d5cd8dc7b80c407b633c14f9ae657a9f32e52d2a1d08", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7581 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/queue.py", + "sha256": "9d1817f3f797fbf564bf1a17d3de905a8cfc3ecd101d4004c482c263fecf9dc3", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6655 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/request.py", + "sha256": "367cda10a4353dabb0e4c14c57a1e68043072137f402e6bd7d0bb38b6b99cc67", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 9, + "row": 9121 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/response.py", + "sha256": "189a60dc4822f6a6895d1c01879c2ff8c36e4566a7e4122ee34a117a8c563f6f", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 9, + "row": 8816 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/retry.py", + "sha256": "b3764d2973bafeddb7650320f3396edb43cc4aaada4f8f79f92fe6118ff5f5a9", + "language": "Python", + "lines": 602, + "truncated": false, + "block": 9, + "row": 11925 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/ssl_.py", + "sha256": "74a707facaa247f1125aa28fd4f27a4940144afa82f9f90c406ad3a2457834c6", + "language": "Python", + "lines": 474, + "truncated": false, + "block": 9, + "row": 11575 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/ssltransport.py", + "sha256": "bce3823d19fe74e0d4676aad3027d2b5bd099a382b80968a2ea27daaf2ae705b", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 9, + "row": 10120 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/timeout.py", + "sha256": "4126c150d381f7287a0270e7eb54ab2d0d21839a33d08f7eb97106f75009b888", + "language": "Python", + "lines": 268, + "truncated": false, + "block": 9, + "row": 10824 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/url.py", + "sha256": "28fff26870344c5140b1048899cfc53873be5aadcf3477ff6ca39b29cae0754e", + "language": "Python", + "lines": 430, + "truncated": false, + "block": 9, + "row": 11335 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/wait.py", + "sha256": "dcc50a452014243076b60728eea454b245b4cd7180598bd1444e10d7feb194bb", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 9, + "row": 9619 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/webencodings/__init__.py", + "sha256": "a8e04922e3f2ff8072607e96fdb360245faa610d83a14f9d2ac0eee724560978", + "language": "Python", + "lines": 342, + "truncated": false, + "block": 7, + "row": 3452 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/webencodings/labels.py", + "sha256": "e003bf2b14dd76a1adacbf67b3b9003e36f409c37ac6c088c5b2b7ec763daf71", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 7, + "row": 1864 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/webencodings/mklabels.py", + "sha256": "19821ecb09e968b9cfd064a273c2c55a0774515bcefe5d4d73a62817ef3b47fe", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 6, + "row": 27690 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/webencodings/tests.py", + "sha256": "3ad18bca384d6357ef916d46bcb27f155f59a2a0bd027ca3afbab79314dbccdb", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 6, + "row": 44262 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/webencodings/x_user_defined.py", + "sha256": "c8ea9649d9a9cad19f52087f67a258803361a1cf81007cb279e4f5e45af8dad3", + "language": "Python", + "lines": 325, + "truncated": false, + "block": 6, + "row": 39647 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/__init__.py", + "sha256": "3f73cd377fe6f0926b60ca7e8be4aafb7ae12b9bee562aaa8e7d545ca1df7bb4", + "language": "Python", + "lines": 3288, + "truncated": false, + "block": 8, + "row": 1046 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/appdirs.py", + "sha256": "3227af504bafde5fe6408487e52174b210e4fc13611c7cd88803eb4f72133782", + "language": "Python", + "lines": 608, + "truncated": false, + "block": 7, + "row": 9759 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/__about__.py", + "sha256": "3cd32c6999f851c087cae6e044e1f56e5e8296e76e3e3239905ad2a7f660925a", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6853 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/__init__.py", + "sha256": "e9e9dba795e045f8c18ec23df9b9f4d078c77f94c7db53c330e2a4256f31c3ec", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 6, + "row": 23120 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/_compat.py", + "sha256": "31776c1a9484fd6f99ac7a02f3b6a7748e0b576140c14ec72cbf9e1defc28e15", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7180 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/_structures.py", + "sha256": "a339025fc43c7f6a84d4489cdd8890e1bb8355f833da261ebd8f5eed1db2de26", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 6, + "row": 31920 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/_typing.py", + "sha256": "c79f44850e7b4cc4fe9134722d9576e4766f6061b06ee713a3a88a87f3b4b4cc", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 6, + "row": 30926 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/markers.py", + "sha256": "6129ed4243272b2c35fc51baa1134d9c6c4b2fa6c0c5c1973adb8513e6134b79", + "language": "Python", + "lines": 328, + "truncated": false, + "block": 9, + "row": 10730 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/requirements.py", + "sha256": "47c2b81f8c57fe20f82efa46c35537a2eb8f6c637ec33b05803edbae100cef56", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 9434 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/specifiers.py", + "sha256": "b98a7d975dc5d0b7249d2e9de0deb4cad88180598884a89d78eabd027b314dca", + "language": "Python", + "lines": 863, + "truncated": false, + "block": 9, + "row": 12268 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/tags.py", + "sha256": "34a312dfb668fe75ab67182c0facdb5ec5e073d79d9fd9b5eb470188b98725d1", + "language": "Python", + "lines": 751, + "truncated": false, + "block": 9, + "row": 12045 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/utils.py", + "sha256": "452865be78ced82b58483f2eae2df67eb30c14c4e607ede286cab5fa08732c4c", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7756 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/version.py", + "sha256": "0a76e6f8e3bd0ffa9df194c5c7315c8d26af7b14981599b279aa0fbccb2380f7", + "language": "Python", + "lines": 535, + "truncated": false, + "block": 9, + "row": 11508 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/pyparsing.py", + "sha256": "49f6ec6e2bf7e4535e0e91ba2a4f3b34875cb96e88e539dea8680eba624db20e", + "language": "Python", + "lines": 4945, + "truncated": true, + "block": 8, + "row": 1183 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/extern/__init__.py", + "sha256": "dcf8b1693f53cf3778368c95e8256119ded2ffd67e539caf31601fb592af0ba9", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 6, + "row": 33455 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/tests/data/my-test-package-source/setup.py", + "sha256": "32b7b39779eac646248c26292319a3861838011f21822e1065d1189a4f88ed1f", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6360 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/__init__.py", + "sha256": "d1cdb7d8b47238b19d2fe6309a093cb8cb9bc7b236d70fa2c495a24f48d02be7", + "language": "Python", + "lines": 241, + "truncated": false, + "block": 9, + "row": 10327 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_deprecation_warning.py", + "sha256": "8d4f7e76d7efe9c2a6b5024e5cdf273f59a6ee038dc3990a12d88fb5bc276722", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 6, + "row": 21280 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/__init__.py", + "sha256": "969400a6147feee8560b67db484a6ce096bd5b86307b337f217fcb244b779215", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 6, + "row": 21446 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/_msvccompiler.py", + "sha256": "8d1d0933903524c9d9eb130389c4338575a05d3557b3595601e51ec42d73d7df", + "language": "Python", + "lines": 561, + "truncated": false, + "block": 7, + "row": 8841 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/archive_util.py", + "sha256": "a96fae886c187b14ef2b97be8927a5ff7d43b21c7e0aa4da9cd3caeac9f07fdf", + "language": "Python", + "lines": 256, + "truncated": false, + "block": 7, + "row": 1417 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/bcppcompiler.py", + "sha256": "3890d5a425265fa1fcbffee5575ce27d5d5f731f760abd9d862521ebdf3d5092", + "language": "Python", + "lines": 393, + "truncated": false, + "block": 7, + "row": 6468 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/ccompiler.py", + "sha256": "1b6b67f50df343455435f5b52ccfa7ae72edffa3a1b6252e9ee802bfce43d4f4", + "language": "Python", + "lines": 1123, + "truncated": false, + "block": 8, + "row": 154 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/cmd.py", + "sha256": "79ca3a2c0194b686cbb8f69fba19a02a09304512ff598f0a27861e0c21e9725b", + "language": "Python", + "lines": 403, + "truncated": false, + "block": 7, + "row": 7944 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/__init__.py", + "sha256": "d9303eae5343973788f9cb1b5875c58c60fcb8e62a00b31fc963a14f8f670ba8", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 6, + "row": 24431 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/bdist.py", + "sha256": "db3e1eb9d465fe7ee6de51bd95e2f4218a9eb386ec9bc7347f17d9ba269f8cc8", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 6, + "row": 42482 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/bdist_dumb.py", + "sha256": "053babf63708a69c8fecf89abe37ec93b623125aafc5e60eda7a54c8f3ce7a47", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 6, + "row": 41093 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/bdist_msi.py", + "sha256": "11515060dfd7f84c5e78ff2099d57d25c20db2e506b0b254cfd69f314d11b7c7", + "language": "Python", + "lines": 749, + "truncated": false, + "block": 7, + "row": 11243 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/bdist_rpm.py", + "sha256": "8233b0db61a10d26dcab46ddab6e5c4dbfa7e875969b46d284b41a77f9a42789", + "language": "Python", + "lines": 579, + "truncated": false, + "block": 7, + "row": 9055 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/bdist_wininst.py", + "sha256": "88695a23e55f1251ce9de79ccca1d69d23796b5d3eec831c25a5ee47599d4b77", + "language": "Python", + "lines": 377, + "truncated": false, + "block": 7, + "row": 7036 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/build.py", + "sha256": "d753724765005336a5ae44d9da98740401c55850b68ed4ac37b808685f8d0b4f", + "language": "Python", + "lines": 157, + "truncated": false, + "block": 6, + "row": 42908 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/build_clib.py", + "sha256": "6e05531e1dbc78b400d86930ebc6a602977f8fba90057e0c4c8fb34ef00afc9e", + "language": "Python", + "lines": 209, + "truncated": false, + "block": 7, + "row": 765 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/build_ext.py", + "sha256": "63f4986ddf121dca6034f7efde27d59e26658d8b3570b00595e0528b6fcedc26", + "language": "Python", + "lines": 755, + "truncated": false, + "block": 9, + "row": 12261 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/build_py.py", + "sha256": "4bf365c3885913c3e7220a97e4e14c766b7e19298e84f410e1fda3af5b819e85", + "language": "Python", + "lines": 416, + "truncated": false, + "block": 7, + "row": 7558 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/build_scripts.py", + "sha256": "68ac9c2493f1dcb7d9d5cbd981225ac670f62e7bd1339589fbcc64a5d81c2ec2", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 6, + "row": 43752 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/check.py", + "sha256": "e6a0ed23be5c719837b0022d41679a22ef32dc5477d783b8aebf529b3e07b04a", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 6, + "row": 42643 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/clean.py", + "sha256": "d930ade3baeee2165933445f55f5188f96dba6272918b3f8421c398c1b6fa7d9", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 6, + "row": 35068 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/config.py", + "sha256": "d9a4e3c30dcfc23301f3e6626c27b83fb07ea86d61335827feb257632c51cfa7", + "language": "Python", + "lines": 344, + "truncated": false, + "block": 7, + "row": 5385 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/install.py", + "sha256": "a0e336ac3ee5fd28250113550e68999fcbba0c07e2757445ff2139412df6f01e", + "language": "Python", + "lines": 677, + "truncated": false, + "block": 9, + "row": 12156 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/install_data.py", + "sha256": "62118e0308778093ea17b7a6e57034ae6a51e36cf56cb87cd28a049730f252f9", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 6, + "row": 35209 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/install_egg_info.py", + "sha256": "d245b496254c79a7648d7d197117cca6d2857a7d3b1b0ea0cb0d551d3e4a2307", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 6, + "row": 34467 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/install_headers.py", + "sha256": "5d0ea27646c80dfaf59635c23b39ee55432f385a47067e9c2b45b3f6020cd9be", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 6, + "row": 27625 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/install_lib.py", + "sha256": "f40a1f47e30ef6502d8f0c2eba40a9b5ea4e68910a3195b65478b2479854ec70", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 7, + "row": 1196 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/install_scripts.py", + "sha256": "fc22d4790c06251718da48a4edaccf327e4876d0c2ae359d52f675921946e9c9", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 6, + "row": 31905 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/py37compat.py", + "sha256": "ab346186f4e286ac7f3d966dd996040b18755f73a3db9e55a9ab737a560500ac", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6803 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/register.py", + "sha256": "da36aaf7debcaedda9b91543071d476cd897bf6eee3a4f22744ff894f7ffdd53", + "language": "Python", + "lines": 304, + "truncated": false, + "block": 7, + "row": 4361 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/sdist.py", + "sha256": "aa8b498c03b3ca1263ab6fa80c89a3345aceb5a4a778414325307eb04935c275", + "language": "Python", + "lines": 494, + "truncated": false, + "block": 7, + "row": 8271 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/upload.py", + "sha256": "04b3b5c3b79202ab028c22d7b5ffc24554a3c05d569b2381c8654635d710f286", + "language": "Python", + "lines": 214, + "truncated": false, + "block": 9, + "row": 10298 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/config.py", + "sha256": "76d1e06e5c7d2617f2acac75f89ec9971c3f7fbb3c65b3c54228b65163136696", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 6, + "row": 40903 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/core.py", + "sha256": "8db74e92938ad3dc62fb9eaf861c2f9f77d87612dbe4324ef2adcad5f9d0cf44", + "language": "Python", + "lines": 234, + "truncated": false, + "block": 7, + "row": 1746 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/cygwinccompiler.py", + "sha256": "f54e0902eb14ce5006265d18e674e83e443795dcec780b62c9ee37e26c09d28c", + "language": "Python", + "lines": 403, + "truncated": false, + "block": 7, + "row": 7206 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/debug.py", + "sha256": "37a32b4c0a8aea5f52564ead5b0791d74f0f33c3a5eea3657f257e9c770b86c6", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 6, + "row": 20867 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/dep_util.py", + "sha256": "1ae47d230fe3cd9464c9e989e475fcac1ff0446c642017019b5aa1e78afbce19", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 6, + "row": 37360 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/dir_util.py", + "sha256": "5308413944dc57ae464f071ee123ee4d747c67cab72d811c9adb6a7066f46d8a", + "language": "Python", + "lines": 210, + "truncated": false, + "block": 7, + "row": 461 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/dist.py", + "sha256": "062b9fe9c6bcba215f31271116c6142ad6f99de30fb712b146d5e7e74ff57f75", + "language": "Python", + "lines": 1257, + "truncated": false, + "block": 8, + "row": 279 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/errors.py", + "sha256": "62bead29919dcc1a0d8b9def06d8aad1427ffd7d390a6c5275026a3966b0e926", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 6, + "row": 37627 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/extension.py", + "sha256": "6d36f74340a87af18a62fe5d5f596cfbe2e7f2d941d3e5043ac8bd070ce567eb", + "language": "Python", + "lines": 240, + "truncated": false, + "block": 7, + "row": 3386 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/fancy_getopt.py", + "sha256": "38fc69d82c478b5629fddd43f09c56e147aaf5f0bbd6d7a040569a7e1e7c1865", + "language": "Python", + "lines": 457, + "truncated": false, + "block": 7, + "row": 7818 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/file_util.py", + "sha256": "d2152a7c8b4dff1d83562851d0c1dd03828231508e3bc568072685a7f6ba3038", + "language": "Python", + "lines": 238, + "truncated": false, + "block": 7, + "row": 901 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/filelist.py", + "sha256": "f1b471873a7616c6a81d3ed3b8a0f842372e87f07d3b0ff14edfe1b5926f3764", + "language": "Python", + "lines": 327, + "truncated": false, + "block": 7, + "row": 5184 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/log.py", + "sha256": "8560667540b62bddbb41c56fdd110c5b71cc3dc97171c3d09e0c4b4ae517425d", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 6, + "row": 31675 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/msvc9compiler.py", + "sha256": "5fadb707dda0d2ff00dc110cf6aa517f7f7a00477f85f8e47c35154cabb485c1", + "language": "Python", + "lines": 788, + "truncated": false, + "block": 7, + "row": 10702 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/msvccompiler.py", + "sha256": "aabb802de191abcf828ed8c4dad2d0f16dba42772171879d5b31667bc0316784", + "language": "Python", + "lines": 643, + "truncated": false, + "block": 7, + "row": 9522 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/py35compat.py", + "sha256": "fac935bc122c3a01fe0286e32186cafce12374917fe78525fc3d44884f5733f7", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 6, + "row": 22539 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/py38compat.py", + "sha256": "208edd741c4e8a30bbb8d378cffe3a1d8523c184c960c3622c9a064e8ae6666d", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 6, + "row": 21244 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/spawn.py", + "sha256": "3a64a7ab712a762b6af09e6fe715cc9994921e32e7e1ab5b59265b2fae49ba50", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9348 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/sysconfig.py", + "sha256": "e73e79314ee05de71e2ff1bd14ae9ec7ed8ebdd7885c945925a7ebb6d84971f5", + "language": "Python", + "lines": 573, + "truncated": false, + "block": 7, + "row": 9005 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/text_file.py", + "sha256": "3ecb8025e59d289a0b495ffa37a229079fb43daf382b32d4b9c24c1516b3c372", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 7, + "row": 4938 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/unixccompiler.py", + "sha256": "13ae5e7428582e81d8f308b83b116eff02adde125edc6c9217abf9d46fd9ccbd", + "language": "Python", + "lines": 328, + "truncated": false, + "block": 7, + "row": 6373 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/util.py", + "sha256": "5a5cfd9e80a1263cde9bd99f80ebbe29a37cb2807868d8517dee151a5b5777cc", + "language": "Python", + "lines": 561, + "truncated": false, + "block": 9, + "row": 11894 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/version.py", + "sha256": "f0da203fa34f3d0a69dc450c65c4fd73310789af9e86a3e8f2ca68fdeec08145", + "language": "Python", + "lines": 347, + "truncated": false, + "block": 7, + "row": 4964 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/versionpredicate.py", + "sha256": "671a4403e4d0bfcf2651673a85eb543b8a92a80dac6bb8a98d9dd010ae5ebc39", + "language": "Python", + "lines": 166, + "truncated": false, + "block": 6, + "row": 41607 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_imp.py", + "sha256": "1e617dd486e2b517ec0f9cfe838ff099cb87f916a1c8838d6cf82208e160b730", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 6, + "row": 33591 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/more_itertools/__init__.py", + "sha256": "0bbb177df1d35ccdcffa268b3cf7ea7e60e8c4e7e540c24b70cede77da778da9", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6340 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/more_itertools/more.py", + "sha256": "0e565af2fe898a15707d0e731e274e03ec43134a2b710214cb156709a5280ca1", + "language": "Python", + "lines": 3825, + "truncated": false, + "block": 9, + "row": 12666 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/more_itertools/recipes.py", + "sha256": "524364aec672aa2c202c700d0539af3210af68d4af48d621c8ea73fc9739e436", + "language": "Python", + "lines": 620, + "truncated": false, + "block": 9, + "row": 11571 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/ordered_set.py", + "sha256": "75b68272cdbb77237d827316185e6703f06b567e90f8dae329826957dfdf801b", + "language": "Python", + "lines": 488, + "truncated": false, + "block": 7, + "row": 6594 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/__about__.py", + "sha256": "3cd32c6999f851c087cae6e044e1f56e5e8296e76e3e3239905ad2a7f660925a", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6853 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/__init__.py", + "sha256": "e9e9dba795e045f8c18ec23df9b9f4d078c77f94c7db53c330e2a4256f31c3ec", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 6, + "row": 23120 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/_compat.py", + "sha256": "31776c1a9484fd6f99ac7a02f3b6a7748e0b576140c14ec72cbf9e1defc28e15", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7180 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/_structures.py", + "sha256": "a339025fc43c7f6a84d4489cdd8890e1bb8355f833da261ebd8f5eed1db2de26", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 6, + "row": 31920 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/_typing.py", + "sha256": "c79f44850e7b4cc4fe9134722d9576e4766f6061b06ee713a3a88a87f3b4b4cc", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 6, + "row": 30926 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/markers.py", + "sha256": "0420b165bb7cc60cac1fcbf9a6a6cb91db509d164720690942a94d0467a4e274", + "language": "Python", + "lines": 328, + "truncated": false, + "block": 9, + "row": 10726 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/requirements.py", + "sha256": "547c9d65d93c9b7a85c517a898dc0aafbd5c9a98da9ed115ff13a1904cb220d2", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 9427 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/specifiers.py", + "sha256": "b98a7d975dc5d0b7249d2e9de0deb4cad88180598884a89d78eabd027b314dca", + "language": "Python", + "lines": 863, + "truncated": false, + "block": 9, + "row": 12268 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/tags.py", + "sha256": "34a312dfb668fe75ab67182c0facdb5ec5e073d79d9fd9b5eb470188b98725d1", + "language": "Python", + "lines": 751, + "truncated": false, + "block": 9, + "row": 12045 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/utils.py", + "sha256": "452865be78ced82b58483f2eae2df67eb30c14c4e607ede286cab5fa08732c4c", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7756 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/version.py", + "sha256": "0a76e6f8e3bd0ffa9df194c5c7315c8d26af7b14981599b279aa0fbccb2380f7", + "language": "Python", + "lines": 535, + "truncated": false, + "block": 9, + "row": 11508 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/pyparsing.py", + "sha256": "49f6ec6e2bf7e4535e0e91ba2a4f3b34875cb96e88e539dea8680eba624db20e", + "language": "Python", + "lines": 4945, + "truncated": true, + "block": 8, + "row": 1183 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/archive_util.py", + "sha256": "99a2436e8cd16c37923f0e77553d1c6ff212dd6d00a7bde5251f2d5fc4590f1d", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 6, + "row": 45082 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/build_meta.py", + "sha256": "c7b148d543ca08ac41052a295e871f1839c96bdf2b40ef1ab4a5d2c09b5d89df", + "language": "Python", + "lines": 281, + "truncated": false, + "block": 7, + "row": 3193 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/__init__.py", + "sha256": "7bef1324e8a451edd2b747f0d9bda9f6ee440dd4b1979cc75012492a27db710f", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 6, + "row": 21273 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/alias.py", + "sha256": "d6c2d0c5970d87a7434290e69b81bb506193a25f379d8d4d4cf98d05b9b6b222", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 6, + "row": 33539 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/bdist_egg.py", + "sha256": "faea6207a7c5b66f1c412423d4b4435691b5f93d78dc3b170af5747e1d37bbb5", + "language": "Python", + "lines": 456, + "truncated": false, + "block": 7, + "row": 7313 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/bdist_rpm.py", + "sha256": "ff863bb55033bb5cc4b8373cb6945d13fb32df3493de1dcb3d3b738a8a2ce429", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 6, + "row": 24984 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/build_clib.py", + "sha256": "7d61d2146924d7454275d0560accef361a306c6f59f42657563436b92227a0eb", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 6, + "row": 39909 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/build_ext.py", + "sha256": "688fea9caf66f2550b6434ba5ccbffa768f6a487a155b49aadbe0f2470c0eddc", + "language": "Python", + "lines": 322, + "truncated": false, + "block": 9, + "row": 11241 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/build_py.py", + "sha256": "7cfecae97f154bdd83fbf8472b98ccf7dc27a928d342125cc79fbc5a9ef8301f", + "language": "Python", + "lines": 252, + "truncated": false, + "block": 9, + "row": 10621 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/develop.py", + "sha256": "074a79761ed5ad231d11f85d504fc02655a4d94c407ac38e635e02015e7f0c40", + "language": "Python", + "lines": 216, + "truncated": false, + "block": 9, + "row": 10429 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/dist_info.py", + "sha256": "e6dea439fadd8002d3f8fde882cb3a3c5f64f8b7b27acb9ec9cba4ddd5326672", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 6, + "row": 25324 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/easy_install.py", + "sha256": "d77069534616d1434963e9353925423e3ec49c26747a9e5f6424b4b8ab99d266", + "language": "Python", + "lines": 2290, + "truncated": false, + "block": 9, + "row": 12620 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/egg_info.py", + "sha256": "b1ef85858235b1933329dea59dd57ffaf364277d615f81d8e1970c52eef597d9", + "language": "Python", + "lines": 734, + "truncated": false, + "block": 7, + "row": 9890 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/install.py", + "sha256": "f1da0cc5e4040e82b811ca3498ed969575f3ce9f509ec18943b67bc969193c6f", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 6, + "row": 40626 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/install_egg_info.py", + "sha256": "6cc81e21e4625f34380c018f575df6f24723c108c78ce594e059e00162d5efc4", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 6, + "row": 32819 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/install_lib.py", + "sha256": "533e3631cb321d9023ac1e9cc3d13b073d31b1a4dbcf19ccd4f23d0818623ed1", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 6, + "row": 38425 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/install_scripts.py", + "sha256": "a348cdfdec7bc98624f16e5c97299314e5f090530acd6f6aff377d36971ec7b3", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 6, + "row": 34426 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/py36compat.py", + "sha256": "ef22d6cd08f5efd127c77a49f15d5c0c30b378b30531df5725794afa2653ab96", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 6, + "row": 41178 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/register.py", + "sha256": "924dc3c5709be655d3bea9e17f0c7683aabb8b06d49a04f25d409a068a013949", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 6, + "row": 22607 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/rotate.py", + "sha256": "4afb103dab1ecc8a233e3bcc9df92ace1f0fd14d2d0a3d1d69ccc5f2e7373503", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 6, + "row": 32501 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/saveopts.py", + "sha256": "cdaed00817108a628aae259ca0271b8713e3533df481207be33b932f8ef1a4fe", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 6, + "row": 23648 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/sdist.py", + "sha256": "a44305d06315b9ace734ae8615a98ae064971bdfea79fd2273ccfb8c4b0f98aa", + "language": "Python", + "lines": 189, + "truncated": false, + "block": 6, + "row": 43286 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/setopt.py", + "sha256": "2e272a957a1c90ba8138760f36fd49d37d87c6804a0f81ce1c1d75aa6fedf81b", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 9, + "row": 9484 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/test.py", + "sha256": "f8ed31ac7f1a7492935c2f1d4992ff6c0876d5da2618cfb3081e5144d7e774d7", + "language": "Python", + "lines": 274, + "truncated": false, + "block": 9, + "row": 10717 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/upload.py", + "sha256": "5d3dd81557d83c0980e6a8468347ae96e53df1fb714545be3f329c38330bc54b", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 6, + "row": 22565 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/upload_docs.py", + "sha256": "6dae643b279d0ffbbadb07a29ebc6aaa7be9b90bc122e6a65de8491bab40bced", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 6, + "row": 45295 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/config.py", + "sha256": "6bf4bd76a6f9975f2f96a7b906b537d37a99e9e1686a00b93d98d8c11617fe6c", + "language": "Python", + "lines": 715, + "truncated": false, + "block": 9, + "row": 11969 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/dep_util.py", + "sha256": "043c75064ccd427b6f001e1a972a476d6e54541ce3aad86cd34d0fad42f866a7", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 6, + "row": 25264 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/depends.py", + "sha256": "8877d974b7650aed81965485f5b460ecd534a2a6cf58c1fc9639b806ec100d8d", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 6, + "row": 42326 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/dist.py", + "sha256": "41565bdb2a608535c5bb3ce9ef9dcadf81f229410058232f01e6120682db0e59", + "language": "Python", + "lines": 1115, + "truncated": false, + "block": 9, + "row": 12427 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/errors.py", + "sha256": "31539cbf7f351cd49a8c3804516cce43827a0790470813128c77da59c130035a", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 6, + "row": 22917 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/extension.py", + "sha256": "34c338e978cd7557a559e99cd31f02c95280e4ab3a666df14d6480d924bac593", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 6, + "row": 30257 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/extern/__init__.py", + "sha256": "1e17fd5bbdd6022b70f5375125f0c86fa6058e62b9e8217ad5a7ddb35320d076", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 6, + "row": 33658 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/glob.py", + "sha256": "d686636df8c01d25db81d852b91e98194f232a86fd2fc36d126058a9c3d32d89", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 6, + "row": 41011 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/installer.py", + "sha256": "8db85bed9564355fdb4943207e72dc670d081ebe911059ca178a3bff526ac66d", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 6, + "row": 37594 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/launch.py", + "sha256": "4f23d3f887354f612762f18edba81f3513f8cac065ae1a5b4634315ac88ee35e", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 6, + "row": 24503 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/lib2to3_ex.py", + "sha256": "60a03b0a6748256c32d3ecae640c548283476d71664f8a79de235a7567414029", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 8114 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/monkey.py", + "sha256": "d1edc77552971cbe35e4eee7a7e014aa11055cf3ee0dd24a6c8e3b72143f0c4e", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 6, + "row": 41798 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/msvc.py", + "sha256": "dcb2edf77f1ee8e47bc163f322f090bbb2c25994882aaa0a57ac37afc8d5de46", + "language": "Python", + "lines": 1805, + "truncated": false, + "block": 8, + "row": 284 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/namespaces.py", + "sha256": "3cca8654f5cf610823513bc483d6c671c440908383ad0e8d9ac0e0fdfc04af02", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 6, + "row": 36128 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/package_index.py", + "sha256": "0bf1529ca9bb599334c1eca9359353652f62f48ebdc2d97707313ea917778d20", + "language": "Python", + "lines": 1128, + "truncated": false, + "block": 9, + "row": 12398 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/py34compat.py", + "sha256": "29839deb26d1c63056f0d266603f2dfd4cb2566caca69157a87a452ddb251975", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 6, + "row": 21409 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/sandbox.py", + "sha256": "222af199e0876e5d421d3ee910f810ead4f1f7053ce789fe776a7cd12bbcb797", + "language": "Python", + "lines": 496, + "truncated": false, + "block": 9, + "row": 11351 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/ssl_support.py", + "sha256": "08f53fe354bec7657aa8eb8436bdb042c392c651ef240a173b1b803dbaf18e93", + "language": "Python", + "lines": 266, + "truncated": false, + "block": 9, + "row": 10548 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/unicode_utils.py", + "sha256": "68e385a38246c00b2206db46603b2a152ed8a9641e6768fa0d6882b9cb51ff4d", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 6, + "row": 25216 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/version.py", + "sha256": "a20fdcb9941bd1023aba429915f6563e5af51e02413cf9f6bceda6fdb23d6531", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 6, + "row": 20893 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/wheel.py", + "sha256": "d0ff2d4a4d74e6e17f51bfb7d0dd875365f6bfb30a0d2763a5e4254515b74a42", + "language": "Python", + "lines": 213, + "truncated": false, + "block": 7, + "row": 1075 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/windows_support.py", + "sha256": "e46adfa923f6f9d2c6268653ab683a7422a4c90c716b69f92108979490a86041", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 6, + "row": 23976 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/__init__.py", + "sha256": "80469c93aab7be06e6ae07a7edc3b77c23afeaf145e21876298ca3ddf2a4e782", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 6, + "row": 20169 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/__main__.py", + "sha256": "945f982cee217509a85ae87879665df182f553de5149d9bbeac34b0576b4be31", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 6, + "row": 22316 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/bdist_wheel.py", + "sha256": "daf7efde0fdbf01bd9e43a3d6e92c405dbbd75011cbe8310d5f957a4a6052435", + "language": "Python", + "lines": 492, + "truncated": false, + "block": 7, + "row": 8297 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/cli/__init__.py", + "sha256": "1964a8194a5169b4dff1b93716c3533eb73916cafc60ebf6757e79898d96ede6", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 6, + "row": 34334 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/cli/convert.py", + "sha256": "ec5e2f8f6dc0d8e8210c35a7f605f657efd37973336b56b99c87a39851845093", + "language": "Python", + "lines": 269, + "truncated": false, + "block": 7, + "row": 2378 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/cli/pack.py", + "sha256": "4be275888cb518f0d34c3767fbf4b0c466bb37bdbd878899348d75103142a9f0", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 6, + "row": 36502 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/cli/unpack.py", + "sha256": "d155b34fb53fc727a74cfc0455abf1aaf75e7bddc63ef0051e747752ef756917", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 6, + "row": 23726 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/macosx_libfile.py", + "sha256": "eef11c1a5976dcaddf88b8edb47d229ed8f14743482bc3babe29a3459ec10a87", + "language": "Python", + "lines": 428, + "truncated": false, + "block": 7, + "row": 6986 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/metadata.py", + "sha256": "6f790f8599f6c360fdc1e9e096d5f99c621943711150e43953e2b9bc728f75e8", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 6, + "row": 39744 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/pkginfo.py", + "sha256": "191efa92ea50ce7d71f6c283697b84e81e85b19e0e91f46d1bba677655cfbd0e", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 6, + "row": 27279 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/util.py", + "sha256": "9a73599090a2f431cb23fab8953b9da03d265bdee1fc0a005a5ee9acd3cb5c97", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 6, + "row": 25200 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/vendored/packaging/_typing.py", + "sha256": "c79f44850e7b4cc4fe9134722d9576e4766f6061b06ee713a3a88a87f3b4b4cc", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 6, + "row": 30926 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/vendored/packaging/tags.py", + "sha256": "cbc86016a7d5d0aae2a3e1de80f0770f4a7f01e898704f17c0094476612b0ded", + "language": "Python", + "lines": 852, + "truncated": false, + "block": 9, + "row": 12192 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/wheelfile.py", + "sha256": "eca80e2b5ce7ae8f83f007a580d104e2383a7c361763f06ee9cadda8b6f61104", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 6, + "row": 45479 + }, + { + "path": "venv/skimpytools/get_subsytems.py", + "sha256": "d524415c493c33bbd7d06845872516c5ba3310f629e6b7e855d152a66bce99f7", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6901 + }, + { + "path": "venv/skimpytools/npy_to_hdf5.py", + "sha256": "d711ef0b9184af7d6faec18807576506fd1a9d1368676580db65e5e9992b0237", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 9, + "row": 9697 + }, + { + "path": "venv/skimpytools/stability.py", + "sha256": "37a1d9c92df25e44e01bd013a7e245fd6f957ec092b0e6ae91dc314a538e5696", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 9, + "row": 10183 + } + ] +} \ No newline at end of file diff --git a/manifests/46/github.com__ram-compbio__cando.json b/manifests/46/github.com__ram-compbio__cando.json new file mode 100644 index 0000000000000000000000000000000000000000..27564ad2fad52551f602d773a541f9890b4327ab --- /dev/null +++ b/manifests/46/github.com__ram-compbio__cando.json @@ -0,0 +1,75 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ram-compbio/cando", + "url": "https://github.com/ram-compbio/CANDO", + "host": "github.com", + "commit": "955eed289e444fa34dc02a916d812202e9abda8c", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE.md", + "redistribution": "yes", + "files": [ + { + "path": "CANDO_tutorial.ipynb", + "sha256": "0ed12690f48ea29fb6a151e1bc3fbba4e4a156b0b3d98db61f3977b97e72d5df", + "language": "Jupyter", + "lines": 719, + "truncated": false, + "block": 9, + "row": 2729 + }, + { + "path": "LICENSE.md", + "sha256": "51bfb501788509ad431309a0a1565f5798d7e6043a500d434839206d8a63e8c0", + "language": "License", + "lines": 11, + "truncated": false, + "block": 9, + "row": 2876 + }, + { + "path": "README.md", + "sha256": "e825068ce7983838dba229624e71f4aa9305ffccee14d40ba633eaaab861d605", + "language": "Text", + "lines": 52, + "truncated": false, + "block": 9, + "row": 14534 + }, + { + "path": "cando/__init__.py", + "sha256": "cfb8f2b453e0500fbbd28a56bca73a6229fe36b4eb85297800bf399b0122a0e7", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6119 + }, + { + "path": "cando/cando.py", + "sha256": "734c6e418239ce514286169cdf38558d245eff011f528458618651052063801e", + "language": "Python", + "lines": 4395, + "truncated": true, + "block": 9, + "row": 12696 + }, + { + "path": "run_test.py", + "sha256": "fd6e741c6e2ffb96998bea8a9a1e3c45a50c59b873ae013e879fcbe1271ec099", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 9, + "row": 9885 + }, + { + "path": "setup.py", + "sha256": "f1814d1bc1b124181a74b03ba16c61124f6e354175b3a9d5582dde67e2dadde9", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 9, + "row": 6377 + } + ] +} \ No newline at end of file diff --git a/manifests/46/github.com__usmanqamarshaikh__oracle-eeg-recoverability-benchmark.json b/manifests/46/github.com__usmanqamarshaikh__oracle-eeg-recoverability-benchmark.json new file mode 100644 index 0000000000000000000000000000000000000000..a66c3d423120384b5be975d1dbf76f409576323e --- /dev/null +++ b/manifests/46/github.com__usmanqamarshaikh__oracle-eeg-recoverability-benchmark.json @@ -0,0 +1,120 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/usmanqamarshaikh/oracle-eeg-recoverability-benchmark", + "url": "https://github.com/usmanqamarshaikh/oracle-eeg-recoverability-benchmark", + "host": "github.com", + "commit": "9edfa5e227f558a6a858f0b17da1870643e91ec0", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "a773cfbc9b61ddfb2820937c3b88b80730349689cecd43c67e4f5a0e8fbe2990", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2832 + }, + { + "path": "README.md", + "sha256": "3f4f6d9bdd6c79dff3dd9117258066356e198ac668eeebd2b09b8d9b63b88e90", + "language": "Text", + "lines": 182, + "truncated": false, + "block": 9, + "row": 14636 + }, + { + "path": "scripts/build_decomp_benchmark_dataset.m", + "sha256": "b9895f384e7754dc77a16a78b488ad1ac7e2270be75ffda5ffe95b4356962837", + "language": "MATLAB", + "lines": 279, + "truncated": false, + "block": 9, + "row": 5493 + }, + { + "path": "scripts/prepare_workspace_example.m", + "sha256": "85cda1568c9f3d3f1c665e6c69c14d814372750e6b1538850db2e3508a5a7b8f", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3777 + }, + { + "path": "scripts/run_all_core_oracle.m", + "sha256": "82e69bc581b05b3d03493d8c8f19834ebf1ee8efdf6726e1917fc493dc584dbc", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3146 + }, + { + "path": "scripts/run_oracle_val_sweeps.m", + "sha256": "6b3eee00eb9c14d969435b8a271e6f08ae25f467d3bbafa069a126a694c15718", + "language": "MATLAB", + "lines": 207, + "truncated": false, + "block": 9, + "row": 5267 + }, + { + "path": "src/check_dependencies.m", + "sha256": "a405e1a17061b8defd915e9e08c0a39ff0d0e90fd2c2a13601e053985ab5fc3b", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3582 + }, + { + "path": "src/compute_metrics.m", + "sha256": "1cfb26a845dfd346a4dd56396fd32f88487fe7e7f37ab254afded85a21a9389f", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3652 + }, + { + "path": "src/decompose_signal.m", + "sha256": "5b41e05fa5219aff5b3445a45694ab6a720d88b4a391e710edaec4d741904b01", + "language": "MATLAB", + "lines": 95, + "truncated": false, + "block": 9, + "row": 4520 + }, + { + "path": "src/dwt_decompose.m", + "sha256": "34c0f23589444011b521905aa8f184cf02e91b4e1d3e498398f72f9810807443", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3500 + }, + { + "path": "src/fit_oracle_weights.m", + "sha256": "3175636a7882d7683bb2202dcf94356a94d2715da739d01afa33eacca75199be", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 3933 + }, + { + "path": "src/ssa_decompose.m", + "sha256": "a0663922b4ebf061fa53fabdcfe19e9149ddb919c5e370eba9551869069df1d7", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 3807 + } + ] +} \ No newline at end of file diff --git a/manifests/46/github.com__wanglabprinceton__accumulating_puffs.json b/manifests/46/github.com__wanglabprinceton__accumulating_puffs.json new file mode 100644 index 0000000000000000000000000000000000000000..1ebae2cdc828bb3bd4ce20cca5b81e2594971cf6 --- /dev/null +++ b/manifests/46/github.com__wanglabprinceton__accumulating_puffs.json @@ -0,0 +1,408 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/wanglabprinceton/accumulating_puffs", + "url": "https://github.com/wanglabprinceton/accumulating_puffs", + "host": "github.com", + "commit": "d3ed79c86cf663921412b608aa0287b4d34ee035", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "b40930bbcf80744c86c46a12bc9da056641d722716c378f5659b9e555ef833e1", + "language": "License", + "lines": 201, + "truncated": false, + "block": 6, + "row": 2069 + }, + { + "path": "README.md", + "sha256": "b092a7d4f920dc4a065a22af3355b1525798053119af1194526c7b788d8c98e7", + "language": "Text", + "lines": 7, + "truncated": false, + "block": 9, + "row": 14454 + }, + { + "path": "config_example.py", + "sha256": "4b30d7a94285a7655d593748826cf8d06b0300a69b98b3c555c4879942ea3190", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7520 + }, + { + "path": "expts/controllers.py", + "sha256": "fec1db83fcc4f68c1037cdbefa9c14e44dd1b2b514b2567a157f03a7d053f421", + "language": "Python", + "lines": 547, + "truncated": false, + "block": 9, + "row": 12030 + }, + { + "path": "expts/routines.py", + "sha256": "5e7077d42fa1c036509066b5dd995ec93c745a230df04a513a46ec6c77145e83", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6463 + }, + { + "path": "expts/saver.py", + "sha256": "eea24d75bd811eafdc069401b59ce5b4315d1fbfa19c8c63cdc02bc6c409505e", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 9, + "row": 10114 + }, + { + "path": "expts/session.py", + "sha256": "8f952ad78097119ce6bc6538b36fca9cd3c37f646a7d82edac4958d7900a6d2f", + "language": "Python", + "lines": 506, + "truncated": false, + "block": 9, + "row": 11860 + }, + { + "path": "expts/trials.py", + "sha256": "d58c0c4e0057cc43550d5eca0584a1bfd89a447e0716cf9447366bcc2be451d2", + "language": "Python", + "lines": 500, + "truncated": false, + "block": 9, + "row": 11919 + }, + { + "path": "expts/views.py", + "sha256": "1d6a95e065ea2e9feb262a5ad7dcb1f7cdd4a3dc6c8c5b223ee4eb6fb22eb1a1", + "language": "Python", + "lines": 446, + "truncated": false, + "block": 9, + "row": 12008 + }, + { + "path": "hardware/__init__.py", + "sha256": "4c00f32e3924fdcb42e919a8635e758f6037fe6259138180945e2751ca68d8c7", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 9, + "row": 6519 + }, + { + "path": "hardware/actuator.py", + "sha256": "3c30ac13a886cddcdd1ff2313dd10140c63ed049622b37be88149750c8e743cf", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 9356 + }, + { + "path": "hardware/analog_reader.py", + "sha256": "8272ef1baa6651e34c59b464039c81c175d7a6d272cf3c0a1da782229c2d1f70", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 9, + "row": 10220 + }, + { + "path": "hardware/audio.py", + "sha256": "06bfd1fcaddefae9d06cb3d908ad2983ddba47b18f0ab6be2195f7782dd80570", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7243 + }, + { + "path": "hardware/cameras.py", + "sha256": "ffe78503a16d55d27a94a33aa4b0201a469b49ae7a9a5ed822e90e6153030aae", + "language": "Python", + "lines": 486, + "truncated": false, + "block": 9, + "row": 12016 + }, + { + "path": "hardware/communications.py", + "sha256": "815b25fbc6f1966b9adc6fcde5fc7526a1982b88391aec9202f0644425e6073f", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 9, + "row": 7139 + }, + { + "path": "hardware/daq.py", + "sha256": "3df94cf60e8ab75a54219abc09117abed1794b3db518f12e7de5fe5b373dbd45", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 9, + "row": 9985 + }, + { + "path": "hardware/daqold.py", + "sha256": "b0967a1cc2271a735422ce7dd7922f8d2153070446b1a11b9aaf062db4b2adcc", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 9, + "row": 10369 + }, + { + "path": "hardware/dummy.py", + "sha256": "aa01c3c7998170f45e057b0cf4d0d1a9464a4f8b451295e8291b4b469c8dad9d", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8112 + }, + { + "path": "hardware/light.py", + "sha256": "b6fa411bd04f22eab8d8f9accdcf893ea911e3d8b0f933b54540d6086d341526", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7355 + }, + { + "path": "hardware/mp285.py", + "sha256": "e38d9994496d87cc5b1f8a6129aa2b780a2a98387682a3025dfdff0ebc840673", + "language": "Python", + "lines": 230, + "truncated": false, + "block": 9, + "row": 10245 + }, + { + "path": "hardware/ni845x.py", + "sha256": "e98ec7d15503f581624624064cee015bc6b7b13c32c73a339924e6e253edf8a5", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 9220 + }, + { + "path": "hardware/opto.py", + "sha256": "38cbf20c61af800c23933eab5f7e2cd3c0014c6099fb11c92e811e10489700be", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7269 + }, + { + "path": "hardware/valve.py", + "sha256": "78e6d978fe77a119f14694784baff2ff0be08caf02f7d4047cb6c776ac3852fd", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 8752 + }, + { + "path": "run.py", + "sha256": "23193dbd69f3e122791df19fd16ddb2fd4a58be348c057a81ac247c78478ac1a", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 9, + "row": 6537 + }, + { + "path": "settings/__init__.py", + "sha256": "8206d67df73a9a39c3dbd93f3290cd652262cf25397952810901ded27d2768a2", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 9, + "row": 6362 + }, + { + "path": "settings/conditions.py", + "sha256": "ba291ff0daab008547aaa6776fdb196b2db1821c6eaa69cd3088c73ecb6942d4", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6857 + }, + { + "path": "settings/constants.py", + "sha256": "c3286967de70c13f0127ab9ff5b7e8573f972dd438c7d9dde221709250e5213f", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6425 + }, + { + "path": "settings/durations.py", + "sha256": "e6ae87101d3cb3b3d423feb998f18f6422a1110a6c78370df4d9f691d181a1e8", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6471 + }, + { + "path": "settings/levels.py", + "sha256": "e735d2767356c894d19d1098b7c0209a5e2362859f12dbea2caaeb0b06d7196b", + "language": "Python", + "lines": 207, + "truncated": false, + "block": 9, + "row": 10665 + }, + { + "path": "settings/manipulations.py", + "sha256": "74be29b12c9eb6da017b43312eef3ba38e71f3fb9998689d611ef1727fb6b37c", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 9, + "row": 7163 + }, + { + "path": "settings/param_handlers.py", + "sha256": "147722e73a0ba2beaa8c0e1be73233237f6b855bad9c8f0e4ea6818a0725e11b", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 9691 + }, + { + "path": "settings/ratios.py", + "sha256": "22ed8ce7de2792a6bf1097a7b47969ec008d5f21b327745697e14743c6ea81f6", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 9, + "row": 6424 + }, + { + "path": "settings/rules.py", + "sha256": "9ca4da52dd0f2fac2fa2d9aa53418ba0eab1003dc8e1434a0f1703fd72d10d2d", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6904 + }, + { + "path": "subjects/__init__.py", + "sha256": "8ad0461f8ef9ac3615dfd25fcbf73a4fc9b58e36f20738ff65f80caf18cf25fb", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6139 + }, + { + "path": "subjects/subjects.py", + "sha256": "796a5f4e0ca99b5e4a5b83e6cc8397ea0372b9be3bce65124375e701592108bd", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 9, + "row": 8427 + }, + { + "path": "util/__init__.py", + "sha256": "61defb2a2c65ff6ff88e1c94f8893092606b442cae4bcf32cd29a8124e952b4d", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6373 + }, + { + "path": "util/custom_time.py", + "sha256": "aaa0dc79edc1726ed4d0bb0da0389641d3586a2ea92c3ec51be56e979092ab42", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 9, + "row": 6480 + }, + { + "path": "util/edit_hdfstore_file.py", + "sha256": "1c1d21f16f2abb46e47d8cf90d030daabcfb36e05ff77204a2cc122c3f15092a", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 9, + "row": 7013 + }, + { + "path": "util/fix_corrupt_ar.py", + "sha256": "53a7de63e3dcab9d0126cb799a3514528fc61fd98b492877263138f096595269", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 9, + "row": 9266 + }, + { + "path": "util/logs.py", + "sha256": "a9a2e1a6baed3a73020dbfac17033feb8b3834139b07249384119df037e77410", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6924 + }, + { + "path": "util/new_data_file.py", + "sha256": "89269fa2b9e2919f3ba410b2c5b3c9c2aed153aa69035f7604b629dc94157b4b", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 6899 + }, + { + "path": "util/notifications.py", + "sha256": "3802e65ded525e420513f86842584d87b8f8cb7bc90afb1441d103428452180c", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7372 + }, + { + "path": "util/process_data.py", + "sha256": "a87ee100dd3272dfda3a6ff8bc67ac15d12802128d770b83c1a263585df4c4b0", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7458 + }, + { + "path": "util/tcpip.py", + "sha256": "2aff011536ad69fa01f605d422685c6cd44874938e850ed894dec92b78a2e42b", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8308 + } + ] +} \ No newline at end of file diff --git a/manifests/46/zenodo__18682277.json b/manifests/46/zenodo__18682277.json new file mode 100644 index 0000000000000000000000000000000000000000..0646c69df5dc72fc59f04b94df098068fe0c71b9 --- /dev/null +++ b/manifests/46/zenodo__18682277.json @@ -0,0 +1,75 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18682277", + "url": "10.5281/zenodo.18682277", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "check_read_depth.R", + "sha256": "37b049b20f2d7ae7d093abab84e648860937c33f8795efcaebee7a0250447aaf", + "language": "R", + "lines": 147, + "truncated": false, + "block": 9, + "row": 13491 + }, + { + "path": "geneAnno.R", + "sha256": "34f7190eb7dd6f5ea8bc0b50d50b639e82a055842a9951e65273b476bb665c1c", + "language": "R", + "lines": 156, + "truncated": false, + "block": 9, + "row": 13609 + }, + { + "path": "germline_variant_analysis.R", + "sha256": "2e5e3d0636b3dc535444187241eba9fd2cd671567224dc3aa66bfc5d62deb55d", + "language": "R", + "lines": 95, + "truncated": false, + "block": 9, + "row": 13295 + }, + { + "path": "pTDP43_quantification.R", + "sha256": "b98d172ad8edfbcb3642f3daedbde212d5cbb9689777fac86a666ba879e0fc96", + "language": "R", + "lines": 116, + "truncated": false, + "block": 9, + "row": 13345 + }, + { + "path": "somatic_variant_analysis.R", + "sha256": "54af3a8f61e5cd07a0c26abce0ef6020074ae70a0a96a0db64b2aee63917f0c7", + "language": "R", + "lines": 101, + "truncated": false, + "block": 9, + "row": 13317 + }, + { + "path": "spike_in_benchmarking.R", + "sha256": "78b033b1a91d4cc46f0381ccc12692efd98e718e51ceea334bf37d7e66c6ac92", + "language": "R", + "lines": 146, + "truncated": false, + "block": 9, + "row": 13378 + }, + { + "path": "variant_burden_analysis.R", + "sha256": "b42004aaaa92b16c4040833d9f90bef6221cc55d3a7d5eaefe27170348216569", + "language": "R", + "lines": 454, + "truncated": false, + "block": 9, + "row": 13725 + } + ] +} \ No newline at end of file diff --git a/manifests/47/github.com__bjarten__early-stopping-pytorch.json b/manifests/47/github.com__bjarten__early-stopping-pytorch.json new file mode 100644 index 0000000000000000000000000000000000000000..baf852733d1ed8fd329e12fa288306785150233f --- /dev/null +++ b/manifests/47/github.com__bjarten__early-stopping-pytorch.json @@ -0,0 +1,75 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/bjarten/early-stopping-pytorch", + "url": "https://github.com/Bjarten/early-stopping-pytorch", + "host": "github.com", + "commit": "fbd87a6135820700e27cda3448d5d54dc6fd3b0c", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "6c0ef0c820039196a6ea87d652499d6974267147c1281bc62afe6e9d83218213", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2831 + }, + { + "path": "MNIST_Early_Stopping_example.ipynb", + "sha256": "ec6d3f9ae54e60f90f72879782c1342deae2c3670306743b07cbaac6fef563be", + "language": "Jupyter", + "lines": 308, + "truncated": false, + "block": 9, + "row": 2496 + }, + { + "path": "README.md", + "sha256": "57745566c3a8d0618844236db7b2e93dffce4b0d6ac109c2bb56b53ab55fd5e6", + "language": "Text", + "lines": 78, + "truncated": false, + "block": 9, + "row": 14573 + }, + { + "path": "early_stopping_pytorch/__init__.py", + "sha256": "5f0f582cca399fb917dcb183f487a586c94a9a6f37e6d82e6a7a9742e34ad334", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6277 + }, + { + "path": "early_stopping_pytorch/early_stopping.py", + "sha256": "c76a4daf537c7e873f41b0eab05fffa58fff127760b45c5623005f3551d5b344", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 8174 + }, + { + "path": "setup_dev_env.sh", + "sha256": "455ef714803f5a401ea63bfa33ec333a33580ef024fd948d203fc7d5965573dd", + "language": "Shell", + "lines": 31, + "truncated": false, + "block": 9, + "row": 14113 + }, + { + "path": "tests/test_early_stopping.py", + "sha256": "7a494a40f502717d2671682c4aa982a4197da4c2a57bebeb47747408c79823e1", + "language": "Python", + "lines": 357, + "truncated": false, + "block": 9, + "row": 11724 + } + ] +} \ No newline at end of file diff --git a/manifests/47/github.com__markusdrag__nanoporetobed-pipeline.json b/manifests/47/github.com__markusdrag__nanoporetobed-pipeline.json new file mode 100644 index 0000000000000000000000000000000000000000..16bf289107d1a5ebd92afc931fb3f0a6259cc1b7 --- /dev/null +++ b/manifests/47/github.com__markusdrag__nanoporetobed-pipeline.json @@ -0,0 +1,84 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/markusdrag/nanoporetobed-pipeline", + "url": "https://github.com/markusdrag/NanoporeToBED-Pipeline", + "host": "github.com", + "commit": "d532b5a8f39df17bc8b4e82c4bca58cb6d8c361f", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "51cb2aa02129e292cad5c498cf91008cbc318ffd263fc2f053ef0aee984567d8", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2828 + }, + { + "path": "NanoporeToBED.sh", + "sha256": "0cdfc4c3522fa4356e2e0870cf8e14742d6d7892d8fb45f286e5a8a126ac2f2c", + "language": "Shell", + "lines": 819, + "truncated": false, + "block": 9, + "row": 14420 + }, + { + "path": "README.md", + "sha256": "a06b02a587e5341e8dddcd5bccd52c9e4c43c2937efc71bbb39a32cf80f5e105", + "language": "Text", + "lines": 542, + "truncated": false, + "block": 9, + "row": 14738 + }, + { + "path": "examples/example_multispecies_run.sh", + "sha256": "b3e3bb65b4cdc30ab306f9149e150ff2b8f3d8430b6fee822a1d9981f96003a4", + "language": "Shell", + "lines": 50, + "truncated": false, + "block": 9, + "row": 14209 + }, + { + "path": "examples/example_run.sh", + "sha256": "87a0671a33ba4003b08f0acbf606076fcd157ef226a693a5e0541448d5c72178", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14030 + }, + { + "path": "generate_demo_beds.R", + "sha256": "b0fa17fbd43b3cecd65dda020b33a94259a29bd77304091c4b553dd21490deba", + "language": "R", + "lines": 113, + "truncated": false, + "block": 9, + "row": 13136 + }, + { + "path": "generate_summary.R", + "sha256": "2488db4537eee3592b787089e46f95502a471a18b6b828f238b415fcc6beae03", + "language": "R", + "lines": 609, + "truncated": false, + "block": 9, + "row": 13804 + }, + { + "path": "setup.sh", + "sha256": "cd5590f369fd2f4a4ee6731716c1c0ecde14830317a9acee13f7a78a86bd8e4d", + "language": "Shell", + "lines": 793, + "truncated": false, + "block": 9, + "row": 14419 + } + ] +} \ No newline at end of file diff --git a/manifests/47/github.com__obophenotype__cell-ontology.json b/manifests/47/github.com__obophenotype__cell-ontology.json new file mode 100644 index 0000000000000000000000000000000000000000..782abbb5d42d56c3f477a51fb0b1722c94c6c036 --- /dev/null +++ b/manifests/47/github.com__obophenotype__cell-ontology.json @@ -0,0 +1,219 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/obophenotype/cell-ontology", + "url": "https://github.com/obophenotype/cell-ontology", + "host": "github.com", + "commit": "df153e151a5564c47dd8317eedbc96bb2a55a1ef", + "license": "CC-BY-4.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "f5b745ef98087f531e719ee8ca6a96809444573ecc7173c6fa68eaad39b3cc3f", + "language": "License", + "lines": 395, + "truncated": false, + "block": 2, + "row": 1153 + }, + { + "path": "README.md", + "sha256": "f8feae31505f6fa48e00e524669f0baee5917517e4a3eb4cd3fd15d261ebc60b", + "language": "Text", + "lines": 120, + "truncated": false, + "block": 9, + "row": 14716 + }, + { + "path": "src/obol/cfg_cl.js", + "sha256": "6cd36e00e5fd040b0bd8988dbf2095c5a0d992edf6cb608d8cf3407206a31be3", + "language": "JavaScript", + "lines": 5, + "truncated": false, + "block": 9, + "row": 2015 + }, + { + "path": "src/obol/cfg_cl_uberon.js", + "sha256": "fdcce6ff43bae6889cb0d31b3713860f051923a2f3bf3dab0695f9f947fa9ee1", + "language": "JavaScript", + "lines": 8, + "truncated": false, + "block": 9, + "row": 2019 + }, + { + "path": "src/ontology/build.sh", + "sha256": "f9e238267b432b16d1d18d0f845733a1032bd2e632800b8ac08cdcf0b846c322", + "language": "Shell", + "lines": 2, + "truncated": false, + "block": 9, + "row": 13886 + }, + { + "path": "src/ontology/get-new-classes.sh", + "sha256": "8a2ea21c8423e5de90f47264b6a72848a932d15f0f712a6e82152674f4941ae7", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 9, + "row": 14047 + }, + { + "path": "src/ontology/patterns.sh", + "sha256": "9c825857fbd9e048565162965a796e0c96c7843b080d2e2aa90bc1b72981717a", + "language": "Shell", + "lines": 2, + "truncated": false, + "block": 9, + "row": 13889 + }, + { + "path": "src/ontology/prepare_release.sh", + "sha256": "d0e5c346f42b79efbe4c9947eb43d698b079f27b84bcc36e44dd26afa35236fd", + "language": "Shell", + "lines": 2, + "truncated": false, + "block": 9, + "row": 13891 + }, + { + "path": "src/ontology/run.sh", + "sha256": "49f7f1adc323e349a953971efee54fc8c67bd2dedfad5ac9f4ff29445d5891f9", + "language": "Shell", + "lines": 164, + "truncated": false, + "block": 9, + "row": 14358 + }, + { + "path": "src/ontology/test.sh", + "sha256": "98342dd0767876d7c2ec0f098f6b45ea124e92f8df40ac7fe8f326bb5a66a60e", + "language": "Shell", + "lines": 2, + "truncated": false, + "block": 9, + "row": 13887 + }, + { + "path": "src/ontology/util/add-stuff-to-imports.pl", + "sha256": "11d303258ba5c23d47939aa6ded3c81521ebca324edba072be2a2cdaab138afa", + "language": "Perl", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6035 + }, + { + "path": "src/ontology/util/fix-nif-uris.pl", + "sha256": "b4d0410756f5fc519b93096cc4c32fcc84c91c62ecc0a5ebd18fbf9c30593cb2", + "language": "Perl", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6029 + }, + { + "path": "src/ontology/util/fix-synsubsetdef.pl", + "sha256": "6c6df4ef007f73cd953903cc1ca00d1fad5680549accd2058861b869dacd8a25", + "language": "Perl", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6032 + }, + { + "path": "src/ontology/util/obo-grep.pl", + "sha256": "a835af3fde0c2d70e9b3b83f07e1e406d15d7c696245db923585a4037c90d385", + "language": "Perl", + "lines": 101, + "truncated": false, + "block": 9, + "row": 6046 + }, + { + "path": "src/patterns/data/source_data/CellGuide/CG_desc_proc.py", + "sha256": "f5d74e3d359ba608386d0789db3a0ea1a7766271d859e7fd2ddef73f448672a8", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7108 + }, + { + "path": "src/scripts/2D_FTU_images.py", + "sha256": "a34aef3fd939ae1a45724e08de53d376c63be107463557e7e231c2fa8217f312", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8605 + }, + { + "path": "src/scripts/build_cl_crosslinks.py", + "sha256": "2bd2b786142821fd67f4327385e11eff8aebb8f587c7dc6adad08327d6b2cb0c", + "language": "Python", + "lines": 194, + "truncated": false, + "block": 9, + "row": 9968 + }, + { + "path": "src/scripts/clara_select_targets.py", + "sha256": "3b98f3e35e3dbc11e14c9a1bd549440961f067a2a5a89470388e00312742517b", + "language": "Python", + "lines": 423, + "truncated": false, + "block": 9, + "row": 11610 + }, + { + "path": "src/scripts/content_summary.py", + "sha256": "7c315e4f44322930c4873234aded43b5840aabc0cad9a9bfd96c6575591fdba7", + "language": "Python", + "lines": 198, + "truncated": false, + "block": 9, + "row": 9991 + }, + { + "path": "src/scripts/generic_coverage.py", + "sha256": "32d06f5f252b2e605e8f1ffd839ffb2e671c9ce61f4e287012311d0772ba65ea", + "language": "Python", + "lines": 369, + "truncated": false, + "block": 9, + "row": 11176 + }, + { + "path": "src/scripts/obo-simple-diff.pl", + "sha256": "150c3120f95c850db72247d4575f67b774219928daf92fa6232494669c857fbe", + "language": "Perl", + "lines": 189, + "truncated": false, + "block": 9, + "row": 6058 + }, + { + "path": "src/scripts/run-command.sh", + "sha256": "0450980f40870ee7dbd8dd7b9933305bbe4963f0a07e5db34d19bd0889fd3305", + "language": "Shell", + "lines": 4, + "truncated": false, + "block": 9, + "row": 13914 + }, + { + "path": "src/scripts/update_repo.sh", + "sha256": "063471e1e39f8bbedccd1efa447e78edc6ef1e885c390afb6288dc7b88dff057", + "language": "Shell", + "lines": 40, + "truncated": false, + "block": 9, + "row": 14217 + } + ] +} \ No newline at end of file diff --git a/manifests/48/github.com__cortex-lab__psychofit.json b/manifests/48/github.com__cortex-lab__psychofit.json new file mode 100644 index 0000000000000000000000000000000000000000..147a4f210725b11de8f6bca3b07a0b7a6cd1afbf --- /dev/null +++ b/manifests/48/github.com__cortex-lab__psychofit.json @@ -0,0 +1,66 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/cortex-lab/psychofit", + "url": "https://github.com/cortex-lab/psychofit", + "host": "github.com", + "commit": "73354970576a0ba22c35575b5f71213e1ac928df", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Examples.ipynb", + "sha256": "1c7ff0be6379019cde500396e65e4983733eb6ac28e8a41b1cbc222f1381afc7", + "language": "Jupyter", + "lines": 191, + "truncated": false, + "block": 9, + "row": 2382 + }, + { + "path": "LICENSE", + "sha256": "5ba89140972bfadb2535f63880bf7c216bcfb697b4137b5c58214e0f720552a8", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2847 + }, + { + "path": "README.md", + "sha256": "a1f41d012cd05b3d463d8f3379a2149b29ad68a87ee430bab4207bbb1d0246d5", + "language": "Text", + "lines": 32, + "truncated": false, + "block": 9, + "row": 14504 + }, + { + "path": "psychofit.py", + "sha256": "f580392924c02e3194668780915fab03a9eee73da362c66ad553a02899da1808", + "language": "Python", + "lines": 328, + "truncated": false, + "block": 9, + "row": 11010 + }, + { + "path": "psychofit_tests.py", + "sha256": "bfe31540a1d6a15cb3bcde59cbcce6cf686eff5a2d62d425ea754a35f3307a65", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 9, + "row": 9875 + }, + { + "path": "setup.py", + "sha256": "ab6f1f61541dddc0af787937610a7e3180e1303f2aa2a9c761f997a3721e053b", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 6892 + } + ] +} \ No newline at end of file diff --git a/manifests/49/github.com__hubioinfo__cytocommunity.json b/manifests/49/github.com__hubioinfo__cytocommunity.json new file mode 100644 index 0000000000000000000000000000000000000000..9b5167602872e063b02baa64cde1bb951f9467a7 --- /dev/null +++ b/manifests/49/github.com__hubioinfo__cytocommunity.json @@ -0,0 +1,120 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/hubioinfo/cytocommunity", + "url": "https://github.com/huBioinfo/CytoCommunity", + "host": "github.com", + "commit": "13bd3e69a161b787b04fdf5c75c9d1c764e9cb90", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "974c013244c2d2d632ee40fc2e119cb64b7f046c25b3db4b4849fcfe05139c20", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2767 + }, + { + "path": "README.md", + "sha256": "e5a84e5f40ebb2aab1f6a53dada0659871f54c79f97ea285f04dabb3856e77ec", + "language": "Text", + "lines": 270, + "truncated": false, + "block": 9, + "row": 14728 + }, + { + "path": "Tutorial/Supervised/Step1_ConstructCellularSpatialGraphs.py", + "sha256": "12e0786eda772ee832f6465257fe128e94cb71d72edcda6615f3d89db59cc643", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 9, + "row": 10196 + }, + { + "path": "Tutorial/Supervised/Step2_TCNLearning_Supervised.py", + "sha256": "0ed98c1799ab250c1daf9321d347988d20b6a10bed6b5c5ba57de946fb96b4db", + "language": "Python", + "lines": 229, + "truncated": false, + "block": 9, + "row": 10762 + }, + { + "path": "Tutorial/Supervised/Step3_TCNEnsemble.R", + "sha256": "2a3c61079e23f642dd6ad6cb60699401315e36f6b07684973ade3e1a06a92755", + "language": "R", + "lines": 107, + "truncated": false, + "block": 9, + "row": 13236 + }, + { + "path": "Tutorial/Supervised/Step4_ResultVisualization.py", + "sha256": "da3dac8527e91d8ebe2d647684c04ca1fea771273308717e4a4fd6457b3abff7", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 10118 + }, + { + "path": "Tutorial/Supervised/sparse_mincut_pool.py", + "sha256": "94cc02884d2ae5aec7eab231022086afa314b1c2cbaabc611e377d2b884d9a75", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 8663 + }, + { + "path": "Tutorial/Unsupervised/Step1_ConstructCellularSpatialGraphs.py", + "sha256": "cd031dddbf4de9c40dcb367124df03955ad2958c4772a5a2c28eb634cc052fa6", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 10093 + }, + { + "path": "Tutorial/Unsupervised/Step2_TCNLearning_Unsupervised.py", + "sha256": "c5fa1589644fb991d0621e50b6e756f6234d1484b50e5247ca1b55a9ab6bd67d", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 9, + "row": 9960 + }, + { + "path": "Tutorial/Unsupervised/Step3_TCNEnsemble.R", + "sha256": "5cab346d59dc887d4a84fd3770dc5f37f07f829e3b70f2a474505040cb88a62c", + "language": "R", + "lines": 38, + "truncated": false, + "block": 9, + "row": 12876 + }, + { + "path": "Tutorial/Unsupervised/Step4_ResultVisualization.py", + "sha256": "42ae53853551cf33ccda0546b7b231e9a77fed497041a2d18914fbdf4db7d3b7", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 9555 + }, + { + "path": "Tutorial/Unsupervised/sparse_mincut_pool.py", + "sha256": "94cc02884d2ae5aec7eab231022086afa314b1c2cbaabc611e377d2b884d9a75", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 8663 + } + ] +} \ No newline at end of file diff --git a/manifests/4a/github.com__drieslab__spatial-datasets.json b/manifests/4a/github.com__drieslab__spatial-datasets.json new file mode 100644 index 0000000000000000000000000000000000000000..48def5cf8c3d3f20991bc66dc8f9e5bd6fd55fa8 --- /dev/null +++ b/manifests/4a/github.com__drieslab__spatial-datasets.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/drieslab/spatial-datasets", + "url": "https://github.com/drieslab/spatial-datasets", + "host": "github.com", + "commit": "12a495fe6b2394a703f570615b3470d3b3d2bec8", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "35b405e7d91c2a824215e530a5555387d64b9ab377dc5bfe76255c1397a7deb7", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2786 + }, + { + "path": "README.md", + "sha256": "2c9d9af9263bfb2c67bc861a97d85c04a395b479c40d9a3201364a16a86c4e91", + "language": "Text", + "lines": 116, + "truncated": false, + "block": 9, + "row": 14595 + }, + { + "path": "data_file_creation_for_Giotto.R", + "sha256": "b61309b18f4ba0d0388477b0ed34c831d4a6eeaa66cf73970aae9f523503779d", + "language": "R", + "lines": 207, + "truncated": false, + "block": 9, + "row": 13611 + } + ] +} \ No newline at end of file diff --git a/manifests/4c/zenodo__18672703.json b/manifests/4c/zenodo__18672703.json new file mode 100644 index 0000000000000000000000000000000000000000..387b2f84963ec4aeca126079fcb9cc56b88c8bb0 --- /dev/null +++ b/manifests/4c/zenodo__18672703.json @@ -0,0 +1,264 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18672703", + "url": "10.5281/zenodo.18672703", + "host": "zenodo.org", + "commit": "", + "license": "Apache-2.0", + "license_confirmed_by": "license file twinc-main.zip/LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "twinc-main.zip/LICENSE", + "sha256": "db96e67b06fdc92922a7b53e99b590adc74628d6213a9d69c5de1b47faf6704d", + "language": "License", + "lines": 201, + "truncated": false, + "block": 9, + "row": 2898 + }, + { + "path": "twinc-main.zip/README.md", + "sha256": "da43431b628e9699bfba2b30c6076686bd2bf6c298cc2cb4b8f1bb0a6d2c3674", + "language": "Text", + "lines": 11, + "truncated": false, + "block": 9, + "row": 14481 + }, + { + "path": "twinc-main.zip/setup.py", + "sha256": "019ce9578ed1f7defbd56c0066168197d2d0efefe25dc85906f0d383527ecb21", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7506 + }, + { + "path": "twinc-main.zip/twinc/twinc_network.py", + "sha256": "857b9d78164fc9e055e6b37ff75701a36c960d8692b2b3025596b5cfbc357248", + "language": "Python", + "lines": 990, + "truncated": false, + "block": 9, + "row": 12494 + }, + { + "path": "twinc-main.zip/twinc/twinc_test.py", + "sha256": "089a01712c5699675cddbba3429b349286d688364bbc9612cb1fb82aacfa365e", + "language": "Python", + "lines": 210, + "truncated": false, + "block": 9, + "row": 10304 + }, + { + "path": "twinc-main.zip/twinc/twinc_train.py", + "sha256": "d34f411f292b7963c7958e1964b0089b6771f86e4ecc0e930259c6d445bf9418", + "language": "Python", + "lines": 359, + "truncated": false, + "block": 9, + "row": 11232 + }, + { + "path": "twinc-main.zip/twinc/twinc_utils.py", + "sha256": "691b7008870fde529e2f90989500b5b9beb094788fb626ee6ed8553b97617695", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 9, + "row": 11024 + }, + { + "path": "twinc_paper-main.zip/LICENSE", + "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4", + "language": "License", + "lines": 201, + "truncated": false, + "block": 1, + "row": 2216 + }, + { + "path": "twinc_paper-main.zip/README.md", + "sha256": "f100a8a155e388422b8a992f0f11b5f4e6ca1877738fe9dd49ae3a25c019c7e1", + "language": "Text", + "lines": 12, + "truncated": false, + "block": 9, + "row": 14500 + }, + { + "path": "twinc_paper-main.zip/figure_notebooks/TwinC_Figure1.ipynb", + "sha256": "b5fb95c7a8e1b88a319b00cb384ac60195c82c790e6ce8011e26161edb8b70a1", + "language": "Jupyter", + "lines": 519, + "truncated": false, + "block": 9, + "row": 2636 + }, + { + "path": "twinc_paper-main.zip/figure_notebooks/TwinC_Figure2.ipynb", + "sha256": "35140caf47fae14b7e5476601de51e67aebe7c82d43d5bc421cc02724cbb7aa0", + "language": "Jupyter", + "lines": 236, + "truncated": false, + "block": 9, + "row": 2448 + }, + { + "path": "twinc_paper-main.zip/figure_notebooks/TwinC_Figure3.ipynb", + "sha256": "00928e3f727a1efdcbd0696123a6982d4bf8b21e652646cd22589deb670798a9", + "language": "Jupyter", + "lines": 269, + "truncated": false, + "block": 9, + "row": 2465 + }, + { + "path": "twinc_paper-main.zip/figure_notebooks/TwinC_Figure4.ipynb", + "sha256": "5df01af43a583142584fe87f3ece5046ae3c21889dd8af8a8ef69e53ce60ab75", + "language": "Jupyter", + "lines": 313, + "truncated": false, + "block": 9, + "row": 2484 + }, + { + "path": "twinc_paper-main.zip/figure_notebooks/TwinC_Figure5_1.ipynb", + "sha256": "c46c88feb6bee954019948aed54a578e37589d823af4c25f10c0631ea57df80c", + "language": "Jupyter", + "lines": 95, + "truncated": false, + "block": 9, + "row": 2270 + }, + { + "path": "twinc_paper-main.zip/figure_notebooks/TwinC_Figure5_2.ipynb", + "sha256": "3616d2395b3d7be3a312e44c331a43fbde1aeeb33e2d59e567b1554fd8021ed4", + "language": "Jupyter", + "lines": 243, + "truncated": false, + "block": 9, + "row": 2472 + }, + { + "path": "twinc_paper-main.zip/figure_notebooks/TwinC_Figure5_3.ipynb", + "sha256": "4f22f45140297699fc331e92b3b6ff2988f31768de9f8eed5dbc6795f533b9c3", + "language": "Jupyter", + "lines": 241, + "truncated": false, + "block": 9, + "row": 2451 + }, + { + "path": "twinc_paper-main.zip/twinc/twinc_data.py", + "sha256": "7d6fa1dd5e6ba555cce943391c1362bf29414fd4ec6e73c4113468c0dea99c6e", + "language": "Python", + "lines": 1732, + "truncated": false, + "block": 9, + "row": 12605 + }, + { + "path": "twinc_paper-main.zip/twinc/twinc_inference.py", + "sha256": "046a53d4e98f94e3043ce9e239214950cb2a74f67e236c8dd9d078b8a4b30d47", + "language": "Python", + "lines": 224, + "truncated": false, + "block": 9, + "row": 10425 + }, + { + "path": "twinc_paper-main.zip/twinc/twinc_network.py", + "sha256": "aa99deed0f6a13de5c6dcc9ae6ad07544583fed89ff16b2a7f91fdcf355a57cd", + "language": "Python", + "lines": 1024, + "truncated": false, + "block": 9, + "row": 12456 + }, + { + "path": "twinc_paper-main.zip/twinc/twinc_train.py", + "sha256": "0383bf3e43f266ccf0e2913a3d866ae4a57203d43aa13a0985fa43251264e81b", + "language": "Python", + "lines": 358, + "truncated": false, + "block": 9, + "row": 11235 + }, + { + "path": "twinc_paper-main.zip/twinc/twinc_utils.py", + "sha256": "fe690d77a574cd161e67185508102b61b498f5757ebbbb2a3217c926d3fe0aec", + "language": "Python", + "lines": 281, + "truncated": false, + "block": 9, + "row": 11033 + }, + { + "path": "twinc_paper-main.zip/twinc/twinc_visualize.py", + "sha256": "e1eb175ab20aa41aec1e58c57aedf769e72c588cbd63fb7e9b78765740a86c24", + "language": "Python", + "lines": 363, + "truncated": false, + "block": 9, + "row": 11451 + }, + { + "path": "twinc_paper-main.zip/twinc_reg/twinc_reg_data.py", + "sha256": "a6f15d524cd3403509dc271440bf47055cef79e8b04ef2e5f91a8103bbcd6f88", + "language": "Python", + "lines": 860, + "truncated": false, + "block": 9, + "row": 12383 + }, + { + "path": "twinc_paper-main.zip/twinc_reg/twinc_reg_inference.py", + "sha256": "a5af06709d31dc878ef8ce2d82190aa9b4fa347baa1d060a02d950feac330052", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 9, + "row": 10449 + }, + { + "path": "twinc_paper-main.zip/twinc_reg/twinc_reg_network.py", + "sha256": "eae86a483ee81d15d80ff0e25a68990013787ca163d4f25e649d88d12ae9a7e5", + "language": "Python", + "lines": 1096, + "truncated": false, + "block": 9, + "row": 12488 + }, + { + "path": "twinc_paper-main.zip/twinc_reg/twinc_reg_train.py", + "sha256": "4910d24c2e074c03a2bef0dbe208b868aecf1919f8d5effcdf8694959c21cec3", + "language": "Python", + "lines": 402, + "truncated": false, + "block": 9, + "row": 11456 + }, + { + "path": "twinc_paper-main.zip/twinc_reg/twinc_reg_utils.py", + "sha256": "7afcf4c45a9bb97f7a1845e1326b98b87928b13cf3bb03790c623803c3b3baee", + "language": "Python", + "lines": 281, + "truncated": false, + "block": 9, + "row": 11032 + }, + { + "path": "twinc_paper-main.zip/twinc_reg/twinc_reg_visualize.py", + "sha256": "5c94c0992c4e0348c07911408debb4e2cf96f79c93e4e4df097f798ff616610f", + "language": "Python", + "lines": 468, + "truncated": false, + "block": 9, + "row": 11906 + } + ] +} \ No newline at end of file diff --git a/manifests/4c/zenodo__19316674.json b/manifests/4c/zenodo__19316674.json new file mode 100644 index 0000000000000000000000000000000000000000..43fc46ddf8d7f26f5bcf3f1b8b575f3f7a7bc17a --- /dev/null +++ b/manifests/4c/zenodo__19316674.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19316674", + "url": "https://doi.org/10.5281/zenodo.19316674", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "ca77992a2c7c84c2b6a691a9cbb9b40607dc112897c2ba068eecb29468e2ac6a", + "language": "Text", + "lines": 98, + "truncated": false, + "block": 9, + "row": 14510 + }, + { + "path": "choose_k.m", + "sha256": "668b95e340601783f1624fd3feb37b7e551561f37ac8ac24b176f795c518feeb", + "language": "MATLAB", + "lines": 75, + "truncated": false, + "block": 9, + "row": 4689 + }, + { + "path": "signal_decomposition.m", + "sha256": "36151db750de4aef38f69a5f508c4d43e821991e3dc5c852628c6b4c40a931ff", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 4585 + } + ] +} \ No newline at end of file diff --git a/manifests/4c/zenodo__4641309.json b/manifests/4c/zenodo__4641309.json new file mode 100644 index 0000000000000000000000000000000000000000..086361e01fe82c1271280b3ba6bab2dd064142b5 --- /dev/null +++ b/manifests/4c/zenodo__4641309.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:4641309", + "url": "10.5281/zenodo.4641309", + "host": "zenodo.org", + "commit": "", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.txt", + "sha256": "3c6bec273d4cdcbfcd7f02667620c160b212fca8581a74c60a25e49301cf1331", + "language": "License", + "lines": 27, + "truncated": false, + "block": 9, + "row": 2878 + }, + { + "path": "README.md", + "sha256": "9a5e7c434593797e5acba0d5c7f83ebee216b1500202dcb2f4334a85089371aa", + "language": "Text", + "lines": 30, + "truncated": false, + "block": 9, + "row": 14497 + } + ] +} \ No newline at end of file diff --git a/manifests/4d/github.com__graeter-group__kimmdy.json b/manifests/4d/github.com__graeter-group__kimmdy.json new file mode 100644 index 0000000000000000000000000000000000000000..19e432737932ebba15942f757640263ca00b7810 --- /dev/null +++ b/manifests/4d/github.com__graeter-group__kimmdy.json @@ -0,0 +1,948 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/graeter-group/kimmdy", + "url": "https://github.com/graeter-group/kimmdy", + "host": "github.com", + "commit": "0734a98b39d94594e62ddc528ab40cdcd2f50ba5", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "ba7dbf798f64020bba460130a4b17f13902ddf9ccbc5d4f560d62a62be9e1c8c", + "language": "Text", + "lines": 83, + "truncated": false, + "block": 9, + "row": 14550 + }, + { + "path": "_extensions/jmbuhr/molstar/assets/molstar.js", + "sha256": "10597790ff3cdc45601b58bd14ed25cf961a458e7821cadc97145f4baadc73e8", + "language": "JavaScript", + "lines": 2, + "truncated": true, + "block": 9, + "row": 2129 + }, + { + "path": "_freeze/site_libs/clipboard/clipboard.min.js", + "sha256": "e17a1d816e13c0826e0ed7febfabc3277f45571234bde0bf9120829a7169edc9", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 3, + "row": 6920 + }, + { + "path": "_freeze/site_libs/quarto-listing/list.min.js", + "sha256": "0448c6e77b46cc9b9b138eb6b97ddee3896efddecb25dc703d1db9de99bba4f9", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 9, + "row": 2100 + }, + { + "path": "_freeze/site_libs/quarto-listing/quarto-listing.js", + "sha256": "d5157f75fbd472478ac33625526dc4a5eb487ac2e8f14a30e6bb15d274b92242", + "language": "JavaScript", + "lines": 243, + "truncated": false, + "block": 9, + "row": 2078 + }, + { + "path": "_reference/analysis.qmd", + "sha256": "43ca4b041aae08cf4a4aa191755f04c29b6c89c334e370bb4cc60686d72e4a96", + "language": "Quarto", + "lines": 198, + "truncated": false, + "block": 9, + "row": 12739 + }, + { + "path": "_reference/cmd.qmd", + "sha256": "cce2304e09f0953adc115436cd3325ecb6574fb147e887e518df87dc74d933a5", + "language": "Quarto", + "lines": 73, + "truncated": false, + "block": 9, + "row": 12722 + }, + { + "path": "_reference/config.qmd", + "sha256": "5cc4f73ac7da7ea14f9bcda2e85154b064adf33c0d6d924812fb8af239b5fd6f", + "language": "Quarto", + "lines": 83, + "truncated": false, + "block": 9, + "row": 12718 + }, + { + "path": "_reference/constants.qmd", + "sha256": "2724aea7ce3211966c396a6dbe77f1c8d8fc1fb1f313ac91b039ee630a991f86", + "language": "Quarto", + "lines": 15, + "truncated": false, + "block": 9, + "row": 12708 + }, + { + "path": "_reference/coordinates.qmd", + "sha256": "134a4cd4bdff4f935d5c66ee662aedc6964400a4fc35fa08eee7a42fa30049bf", + "language": "Quarto", + "lines": 158, + "truncated": false, + "block": 9, + "row": 12728 + }, + { + "path": "_reference/dummyreaction.reaction.DummyReaction.qmd", + "sha256": "a58eeb204520e909de6d1de7942f94bbd96450e5f821a3e21999d655f4fdadec", + "language": "Quarto", + "lines": 7, + "truncated": false, + "block": 9, + "row": 12704 + }, + { + "path": "_reference/hat_naive.reaction.NaiveHAT.qmd", + "sha256": "1bc01f66f21323d15b17315598197e3cb2fbbeab36c72d0d38b4dc658c52593c", + "language": "Quarto", + "lines": 7, + "truncated": false, + "block": 9, + "row": 12705 + }, + { + "path": "_reference/homolysis.reaction.Homolysis.qmd", + "sha256": "3adc77e15d9ac9aaeb4b0ef2253c05bb27aa0a741105210cbd11a0fa35daa7e0", + "language": "Quarto", + "lines": 8, + "truncated": false, + "block": 9, + "row": 12706 + }, + { + "path": "_reference/index.qmd", + "sha256": "1cdaf8f6adec6ccc74ae25e246904b907252fed1e586baed98a0049da8320d78", + "language": "Quarto", + "lines": 60, + "truncated": false, + "block": 9, + "row": 12717 + }, + { + "path": "_reference/kmc.qmd", + "sha256": "a33e2922380d618ec0a937e4cb71a567d8331f655bc46b5a3a64b782ec612838", + "language": "Quarto", + "lines": 169, + "truncated": false, + "block": 9, + "row": 12736 + }, + { + "path": "_reference/parsing.TopologyDict.qmd", + "sha256": "1cc4bfa88c3125bf3686f35bb6033c32b7dce7520ec4bdb9e382ab833027dae0", + "language": "Quarto", + "lines": 5, + "truncated": false, + "block": 9, + "row": 12703 + }, + { + "path": "_reference/parsing.qmd", + "sha256": "f2d079feec1f58c64ca01e63a35a8e53917fe39755ee165359a47bb4baeb08aa", + "language": "Quarto", + "lines": 317, + "truncated": false, + "block": 9, + "row": 12738 + }, + { + "path": "_reference/plugins.qmd", + "sha256": "c03a829094c66bf746a81f64b7bf83ffe8ca32caa132b56e4d3400fec82a8e7f", + "language": "Quarto", + "lines": 98, + "truncated": false, + "block": 9, + "row": 12723 + }, + { + "path": "_reference/recipe.qmd", + "sha256": "49574ab153fa374883829f708d474935c4ee45f6a42b41d9ba0a93fdb682654f", + "language": "Quarto", + "lines": 337, + "truncated": false, + "block": 9, + "row": 12742 + }, + { + "path": "_reference/runmanager.qmd", + "sha256": "49d2d998cb909a7af4d33df3874a1c4f33900499c60c8b4bb4579c9b2151d78b", + "language": "Quarto", + "lines": 83, + "truncated": false, + "block": 9, + "row": 12726 + }, + { + "path": "_reference/schema.qmd", + "sha256": "87ea94838a93cc701f81bf9d06c261d6477c46940ca23acc41a236e83e66c2f3", + "language": "Quarto", + "lines": 117, + "truncated": false, + "block": 9, + "row": 12721 + }, + { + "path": "_reference/tasks.qmd", + "sha256": "42b1f7f1f8df044bc90b1fa00e5852a749ea2724c0db650238d7657b028e4a78", + "language": "Quarto", + "lines": 103, + "truncated": false, + "block": 9, + "row": 12727 + }, + { + "path": "_reference/tools.qmd", + "sha256": "e5b9b784dea7593d0a597d50bc43c73550df704166f288ca1d5a9af7415ccd8f", + "language": "Quarto", + "lines": 146, + "truncated": false, + "block": 9, + "row": 12733 + }, + { + "path": "_reference/topology.atomic.qmd", + "sha256": "031b964cac8876737651cd7a885a13bb9bd7dc58e75bbe81d12e6108c7cb2cca", + "language": "Quarto", + "lines": 453, + "truncated": false, + "block": 9, + "row": 12737 + }, + { + "path": "_reference/topology.ff.qmd", + "sha256": "267f92c62c2965057c18f3f6f1b841e1f91496e86ecc4555dc808c87dff380e0", + "language": "Quarto", + "lines": 21, + "truncated": false, + "block": 9, + "row": 12707 + }, + { + "path": "_reference/topology.topology.qmd", + "sha256": "aae180597e6a8cf7b013233977db6f4a96382fbac913d0e5f5007a82d3ed7229", + "language": "Quarto", + "lines": 249, + "truncated": false, + "block": 9, + "row": 12740 + }, + { + "path": "_reference/topology.utils.qmd", + "sha256": "cfeeb0dd6f6fc9a617bb2cbd67d9ebcdff275433169a4994a5056f8eb59ac6c0", + "language": "Quarto", + "lines": 167, + "truncated": false, + "block": 9, + "row": 12734 + }, + { + "path": "_reference/utils.qmd", + "sha256": "f7fec0bc8a7b07c773072b7e13f3c81c9ca453f17674c77ccd973c22ebcc21fb", + "language": "Quarto", + "lines": 103, + "truncated": false, + "block": 9, + "row": 12724 + }, + { + "path": "docs/site_libs/bootstrap/bootstrap.min.js", + "sha256": "d2ea6c1e0cabca20d18e924b25a1cd0187c38ba7c33f60ab06e1b0402b9bcdb5", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 3, + "row": 6962 + }, + { + "path": "docs/site_libs/clipboard/clipboard.min.js", + "sha256": "e17a1d816e13c0826e0ed7febfabc3277f45571234bde0bf9120829a7169edc9", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 3, + "row": 6920 + }, + { + "path": "docs/site_libs/quarto-contrib/glightbox/glightbox.min.js", + "sha256": "03dfe1fbce92a9f17fcd1a1501213bd820d050ab085c338419ab06a3631c9459", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 9, + "row": 2119 + }, + { + "path": "docs/site_libs/quarto-contrib/molstar-v3.13.0/molstar.js", + "sha256": "10597790ff3cdc45601b58bd14ed25cf961a458e7821cadc97145f4baadc73e8", + "language": "JavaScript", + "lines": 2, + "truncated": true, + "block": 9, + "row": 2129 + }, + { + "path": "docs/site_libs/quarto-html/anchor.min.js", + "sha256": "69098e105d990f834cff1b7886d873444228ff63c590e5ff834d568f1115ed8b", + "language": "JavaScript", + "lines": 9, + "truncated": false, + "block": 5, + "row": 14883 + }, + { + "path": "docs/site_libs/quarto-html/axe/axe-check.js", + "sha256": "88e2922e397018186991fa708947be84f96f85578e3c7601d29a5e58e367211d", + "language": "JavaScript", + "lines": 145, + "truncated": false, + "block": 5, + "row": 14823 + }, + { + "path": "docs/site_libs/quarto-html/popper.min.js", + "sha256": "4d50586b184724d39ddfe0f6582861664eddd5e806e5a79e0dbaa832361414d0", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 5, + "row": 15263 + }, + { + "path": "docs/site_libs/quarto-html/quarto.js", + "sha256": "14589dacd0cf625c4e6891269681a0a8e20aaa5390864ca6a69f2fff1514719a", + "language": "JavaScript", + "lines": 847, + "truncated": false, + "block": 5, + "row": 15345 + }, + { + "path": "docs/site_libs/quarto-html/tabsets/tabsets.js", + "sha256": "a9c226bf70e82eaf5476f619cecfb70b4446b87ce4d1634d6404b0b2ba006d15", + "language": "JavaScript", + "lines": 95, + "truncated": false, + "block": 5, + "row": 14652 + }, + { + "path": "docs/site_libs/quarto-html/tippy.umd.min.js", + "sha256": "41181eeec6d7ba64cb9165f0e95563e34e026bde79e7c13aeec83270429b6fae", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 5, + "row": 15318 + }, + { + "path": "docs/site_libs/quarto-listing/list.min.js", + "sha256": "0448c6e77b46cc9b9b138eb6b97ddee3896efddecb25dc703d1db9de99bba4f9", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 9, + "row": 2100 + }, + { + "path": "docs/site_libs/quarto-listing/quarto-listing.js", + "sha256": "d5157f75fbd472478ac33625526dc4a5eb487ac2e8f14a30e6bb15d274b92242", + "language": "JavaScript", + "lines": 243, + "truncated": false, + "block": 9, + "row": 2078 + }, + { + "path": "docs/site_libs/quarto-nav/headroom.min.js", + "sha256": "5b80cc4165a661a3f2060d6bdb5ccff591f04c4f8e39a06c12d3c2544587cb17", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 9, + "row": 2064 + }, + { + "path": "docs/site_libs/quarto-nav/quarto-nav.js", + "sha256": "a3e9c8c52dd54d783a6d9294357ef104d17d03faf0a404b592216c0d71a9f717", + "language": "JavaScript", + "lines": 325, + "truncated": false, + "block": 9, + "row": 2088 + }, + { + "path": "docs/site_libs/quarto-search/autocomplete.umd.js", + "sha256": "cd9db3b7d812139a4679a2566ea8f01b2a80159490a60b9e9e813e81b5e00a05", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2126 + }, + { + "path": "docs/site_libs/quarto-search/fuse.min.js", + "sha256": "c57339c3fa16b1d69d9a6b46749a8139ef8d4fc9bbfe48144ff897aa7d4222ec", + "language": "JavaScript", + "lines": 9, + "truncated": false, + "block": 9, + "row": 2108 + }, + { + "path": "docs/site_libs/quarto-search/quarto-search.js", + "sha256": "b685d6ad9b22c04e3f55bcf54e56db7fed463bc881bc92007406e9879a0ec6be", + "language": "JavaScript", + "lines": 1290, + "truncated": false, + "block": 9, + "row": 2117 + }, + { + "path": "guide/explanation/components.qmd", + "sha256": "ac35ac26d20723e1cc7fb07edea10b364d0839a3dd60c29303bd32b0a1e7f488", + "language": "Quarto", + "lines": 29, + "truncated": false, + "block": 9, + "row": 12744 + }, + { + "path": "guide/explanation/index.qmd", + "sha256": "a3701fbf7aad5db6afba36b948097157235c2cc738011102633d10ea05b5c85e", + "language": "Quarto", + "lines": 7, + "truncated": false, + "block": 9, + "row": 12701 + }, + { + "path": "guide/explanation/topology.qmd", + "sha256": "f0f32692bb425a2fde1cc4a23293f6e91520840ee03d06d92e3f139318453ac6", + "language": "Quarto", + "lines": 158, + "truncated": false, + "block": 9, + "row": 12720 + }, + { + "path": "guide/how-to/analyze.qmd", + "sha256": "193ed17ecd9772a6061705606e2eb7fbfa4c2909b797692460bbb765540ff146", + "language": "Quarto", + "lines": 85, + "truncated": false, + "block": 9, + "row": 12719 + }, + { + "path": "guide/how-to/contribute.qmd", + "sha256": "6fcecfa3c1916f89b3f51e689fea9d99d6c8ec5cf65f026190b8ee6f80ebfc64", + "language": "Quarto", + "lines": 121, + "truncated": false, + "block": 9, + "row": 12725 + }, + { + "path": "guide/how-to/examples.qmd", + "sha256": "7cbdf31c29d1b8d96d53c54cef492aeb0c9e350b5f1cd19a414414fe14fb1e1f", + "language": "Quarto", + "lines": 38, + "truncated": false, + "block": 9, + "row": 12711 + }, + { + "path": "guide/how-to/faq.qmd", + "sha256": "d63714f7e130cf41b67f310cb064cd64f3d46fb107d453d451c98bfd7890da5e", + "language": "Quarto", + "lines": 41, + "truncated": false, + "block": 9, + "row": 12713 + }, + { + "path": "guide/how-to/hcp.qmd", + "sha256": "e1b251f6240b3d80233638cfc8d57653e312b6ad9836cb0f13972b3481c04df7", + "language": "Quarto", + "lines": 42, + "truncated": false, + "block": 9, + "row": 12710 + }, + { + "path": "guide/how-to/index.qmd", + "sha256": "5d17939f171ef03ccf3ddbb231b80b9034ade69de1143a59f872287d59e6486b", + "language": "Quarto", + "lines": 8, + "truncated": false, + "block": 9, + "row": 12700 + }, + { + "path": "guide/how-to/install-kimmdy.qmd", + "sha256": "ad7cae3558dd533884cf90923726048dba7a8c576ecdd703d1be60070b4f0cb9", + "language": "Quarto", + "lines": 91, + "truncated": false, + "block": 9, + "row": 12715 + }, + { + "path": "guide/how-to/reaction_only.qmd", + "sha256": "3248e2a6b27f9e101a9fb523bb50cecfa93c1126e4f76ce876b818879a7ecf7f", + "language": "Quarto", + "lines": 38, + "truncated": false, + "block": 9, + "row": 12712 + }, + { + "path": "guide/references/cmd_ref.qmd", + "sha256": "9c4410c39e409501c44cd01c2ed8e195909d4f94be9588e827ca2544e594b844", + "language": "Quarto", + "lines": 47, + "truncated": false, + "block": 9, + "row": 12709 + }, + { + "path": "guide/references/input.qmd", + "sha256": "969512ccd6795eb975ca8658c97707cdb17dae208b40f9b37aae8844f6961cfb", + "language": "Quarto", + "lines": 98, + "truncated": false, + "block": 9, + "row": 12716 + }, + { + "path": "guide/tutorials/analyse-extended-simulations/analyse_kimmdy_migration.py", + "sha256": "2ce41e8eabbe353bf74ff5c7b11b0eca53add860ac54e444d199a6627cc491d0", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 8495 + }, + { + "path": "guide/tutorials/colbuilder-files/change_crosslink_atom_names.py", + "sha256": "91c20c0052a89c9fd7f4618fc43fccec7f8bb12553d009937252a77524e3717e", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 9, + "row": 7548 + }, + { + "path": "guide/tutorials/colbuilder-files/prepare_enforced_rotation.py", + "sha256": "cb77e1bd3e363c5e7d322e5b822e1976e20069f47c53722db93192067cc5c5c1", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 9, + "row": 8859 + }, + { + "path": "guide/tutorials/colbuilder.qmd", + "sha256": "f80e2d1c6cbbb1d306effb8c54f3c4942169faf2726fc584c80b32a940450070", + "language": "Quarto", + "lines": 234, + "truncated": false, + "block": 9, + "row": 12735 + }, + { + "path": "guide/tutorials/getting-started.qmd", + "sha256": "dfe87d9e4e0946496c8725f3710e8e1dc8840e338d193e2cadd449ab719b4582", + "language": "Quarto", + "lines": 206, + "truncated": false, + "block": 9, + "row": 12729 + }, + { + "path": "guide/tutorials/index.qmd", + "sha256": "15496fe741325bdd0809040f292a43a0f959c37f3c0849423a0605658e6a8359", + "language": "Quarto", + "lines": 10, + "truncated": false, + "block": 9, + "row": 12702 + }, + { + "path": "guide/tutorials/modify-topology.qmd", + "sha256": "9f3d7b6b7ea4c1401b74529b4129d6f10ff6ba0f28924baec24819ee43488670", + "language": "Quarto", + "lines": 120, + "truncated": false, + "block": 9, + "row": 12732 + }, + { + "path": "guide/tutorials/write-plugin.qmd", + "sha256": "35700000814fa4bf4e6c479ebe364d3717f39b0cec2c8c421710e6683719d9ae", + "language": "Quarto", + "lines": 181, + "truncated": false, + "block": 9, + "row": 12731 + }, + { + "path": "index.qmd", + "sha256": "e0a01fd68f17058c312ce8fa7daa8e37555f05c5266ad4489e4cb124087ffc94", + "language": "Quarto", + "lines": 1, + "truncated": false, + "block": 9, + "row": 12699 + }, + { + "path": "setup.py", + "sha256": "843ac26c38a41abae578250bc0f9419194b320a0f67327d941037a4268f6cfe7", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 2, + "row": 1605 + }, + { + "path": "src/kimmdy/__init__.py", + "sha256": "f52d49a1a094b034470235e408f20a1b324124854be06ccd88fdc09ac694b414", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6217 + }, + { + "path": "src/kimmdy/analysis.py", + "sha256": "66bc8ec200aae27bef1b8fe51e3f7c2a562d52469b64ea5f1f87d1d1a4814401", + "language": "Python", + "lines": 987, + "truncated": false, + "block": 9, + "row": 12272 + }, + { + "path": "src/kimmdy/assets/templates.py", + "sha256": "628a345cd5cf8a3eda0157c95f29f81eb64914c042dd6b4fc829c42708b4d0a4", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 7281 + }, + { + "path": "src/kimmdy/cmd.py", + "sha256": "2cd6076b91f9c3feacfd859bcbd299806d56af0c097da0d4a1dffeabec6ed08e", + "language": "Python", + "lines": 293, + "truncated": false, + "block": 9, + "row": 10627 + }, + { + "path": "src/kimmdy/config.py", + "sha256": "625d8e3b76147502b8297c250ea1bb5941c4af0fa98891828b680c759b6b5bb0", + "language": "Python", + "lines": 499, + "truncated": false, + "block": 9, + "row": 11819 + }, + { + "path": "src/kimmdy/constants.py", + "sha256": "d74a0cd0f895a9f0b0de1772cd738f9e0a29db7170d9b2fee2546291665468de", + "language": "Python", + "lines": 255, + "truncated": false, + "block": 9, + "row": 9290 + }, + { + "path": "src/kimmdy/coordinates.py", + "sha256": "04a3cc40cf4017e202bc11c75b875d4379a2f5e3e1f30a00c1a1e3e587dada2a", + "language": "Python", + "lines": 1174, + "truncated": false, + "block": 9, + "row": 12464 + }, + { + "path": "src/kimmdy/kmc.py", + "sha256": "c78e7c5cbe4f23c584a0245e7cffce96f64d14725f58902b6ed0ff5811e03ed6", + "language": "Python", + "lines": 648, + "truncated": false, + "block": 9, + "row": 11936 + }, + { + "path": "src/kimmdy/parsing.py", + "sha256": "1842704f30fa52f19ba7c4c446cba8e49c560170fa6f3dc0e4705dc4f13213ea", + "language": "Python", + "lines": 697, + "truncated": false, + "block": 9, + "row": 11991 + }, + { + "path": "src/kimmdy/plugin_utils.py", + "sha256": "f91f6207e02ecca40d2236fcbf05705052874aeb0f64748f4c7ea1eec6fb2634", + "language": "Python", + "lines": 414, + "truncated": false, + "block": 9, + "row": 11275 + }, + { + "path": "src/kimmdy/plugins.py", + "sha256": "0e824a0423fb5c1f0750102273fc322aa5ff81644ae25c53ee9eb1ecaa399ef5", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 8964 + }, + { + "path": "src/kimmdy/recipe.py", + "sha256": "7b53720fe918fdd91feabf480ca2ce33fccf64477bcd702ef1d89ccba1407735", + "language": "Python", + "lines": 954, + "truncated": false, + "block": 9, + "row": 12297 + }, + { + "path": "src/kimmdy/runmanager.py", + "sha256": "82b22bf383de836f3cd8613bc4a9f704400fe7e4dd7697291f050b52de138a8b", + "language": "Python", + "lines": 1357, + "truncated": false, + "block": 9, + "row": 12524 + }, + { + "path": "src/kimmdy/schema.py", + "sha256": "c3f13852e423de86db1df76cc8e20a19e4c2afe1bfaa36f61aa2775ad4535569", + "language": "Python", + "lines": 254, + "truncated": false, + "block": 9, + "row": 10222 + }, + { + "path": "src/kimmdy/tasks.py", + "sha256": "d8ca50014c377e3909a799c86423fa7653c51ce180dff9aff0b5e2a50707f101", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 9, + "row": 10190 + }, + { + "path": "src/kimmdy/tools.py", + "sha256": "4741adeb2071aceab6b1d4cdb88fe14c9db2a5daf3700f4fd905dca3e01a7d96", + "language": "Python", + "lines": 557, + "truncated": false, + "block": 9, + "row": 11704 + }, + { + "path": "src/kimmdy/topology/atomic.py", + "sha256": "8e526bb1319254a4c139f0d66c4f6eb3eebe9f07d32ec651a4c034a2b18358bc", + "language": "Python", + "lines": 781, + "truncated": false, + "block": 9, + "row": 11811 + }, + { + "path": "src/kimmdy/topology/ff.py", + "sha256": "4bdf25abbc6ec3e9953ef7384aad1ffadcaf7a8edd69b8ce16af6dcc3d951f24", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 9, + "row": 10013 + }, + { + "path": "src/kimmdy/topology/topology.py", + "sha256": "c069b3ac229503d47e5b540008aad4a3c16fa18bef88920c493672866fb25b33", + "language": "Python", + "lines": 1607, + "truncated": false, + "block": 9, + "row": 12563 + }, + { + "path": "src/kimmdy/topology/utils.py", + "sha256": "4153215565c0b60c91ac5f27db8bd7d6ef4c76a4fde3f188b6a842b34853d7b0", + "language": "Python", + "lines": 378, + "truncated": false, + "block": 9, + "row": 11231 + }, + { + "path": "src/kimmdy/utils.py", + "sha256": "598d84654e135bba33effdee3c7e0aaab5a5a224465392bca5c463895cb19939", + "language": "Python", + "lines": 285, + "truncated": false, + "block": 9, + "row": 10855 + }, + { + "path": "tests/conftest.py", + "sha256": "0ed393b0d2fb1088ae3b01920e38cd768c0396426b4cdad4016e4350fef64b94", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8241 + }, + { + "path": "tests/test_cmd.py", + "sha256": "98472f84deebf03e61a354c7e1ef6912b1b2977f60389fb941acb9d0e1d01e1d", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7328 + }, + { + "path": "tests/test_config.py", + "sha256": "3524da3753e6dea6f99c1bb489c978b66ef3a7992e16c988018d4a61ac719fdc", + "language": "Python", + "lines": 213, + "truncated": false, + "block": 9, + "row": 9978 + }, + { + "path": "tests/test_coordinates.py", + "sha256": "a3fbdf6fcc674b20b0d785d8e652cd6bb1737c4a0923852eac38c0f1e0dfcc68", + "language": "Python", + "lines": 460, + "truncated": false, + "block": 9, + "row": 11423 + }, + { + "path": "tests/test_files/test_integration/alanine_hat_naive/run.sh", + "sha256": "d808ae55429e1cc5f5fb41653c9715c3955bfcfd5bcef0a574e966fe5766e24c", + "language": "Shell", + "lines": 27, + "truncated": false, + "block": 9, + "row": 14202 + }, + { + "path": "tests/test_files/test_integration/alanine_hat_naive_pull/eq.sh", + "sha256": "03c0bfc90819f3f668e17a434311643a2730e51515b50ed078b842eeefef6406", + "language": "Shell", + "lines": 31, + "truncated": false, + "block": 9, + "row": 14111 + }, + { + "path": "tests/test_files/test_integration/alanine_hat_naive_pull/run.sh", + "sha256": "cd6c68f740320ebe7b27474da857719771c6083578576b6c285f3ea1ed27f520", + "language": "Shell", + "lines": 51, + "truncated": false, + "block": 9, + "row": 14271 + }, + { + "path": "tests/test_integration.py", + "sha256": "ae62248bcb0845a1deea989664b86ee29aea27869b08c766d377a0242d11d82f", + "language": "Python", + "lines": 273, + "truncated": false, + "block": 9, + "row": 10757 + }, + { + "path": "tests/test_kmc.py", + "sha256": "9f168cf6531f386917c68c9a290fe7dcbfa8979ba78dadb43269b39332852db4", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 9, + "row": 10125 + }, + { + "path": "tests/test_parsing.py", + "sha256": "bfef566106d16840c6928aa6fafa50868fe7c7ac28b1d33a112e5f97e50905b4", + "language": "Python", + "lines": 279, + "truncated": false, + "block": 9, + "row": 10600 + }, + { + "path": "tests/test_plugin.py", + "sha256": "017c16ae15a1b0fe30dad506b053a38d334079bf3e9f7c6bfd2508020cc78439", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6839 + }, + { + "path": "tests/test_recipe.py", + "sha256": "969270ba8e7c240a1726ecb3e6a5cb9ed6e2fec38081a0b8f758948b2e7e68cb", + "language": "Python", + "lines": 373, + "truncated": false, + "block": 9, + "row": 11023 + }, + { + "path": "tests/test_schema.py", + "sha256": "84176a00cd2bab4a0342e293e27ca586b11e10a0a9e72a181a8e0535856e1ff5", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6854 + }, + { + "path": "tests/test_topology.py", + "sha256": "02efa02036e0756a6ceb652adbf72775808166e27ed91a3af134e1a2e53c56f2", + "language": "Python", + "lines": 1080, + "truncated": false, + "block": 9, + "row": 12376 + } + ] +} \ No newline at end of file diff --git a/manifests/4e/github.com__raidionics__raidionics.json b/manifests/4e/github.com__raidionics__raidionics.json new file mode 100644 index 0000000000000000000000000000000000000000..6eb4b6d6e337013d1d23c57e3a72a5ae357af419 --- /dev/null +++ b/manifests/4e/github.com__raidionics__raidionics.json @@ -0,0 +1,1038 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/raidionics/raidionics", + "url": "https://github.com/raidionics/Raidionics", + "host": "github.com", + "commit": "fcb5d92f9ab8150336cd4ba23968823cc49f4aa2", + "license": "BSD-2-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "7ab0a1e7242506e0003ae8059a7ad992eb996233163ac09a2bd3891ece521718", + "language": "License", + "lines": 26, + "truncated": false, + "block": 9, + "row": 2870 + }, + { + "path": "README.md", + "sha256": "e5d9beafc05e3a605fa7ab1badf8f483466d99fdcd99300ec3cc18f2a6220a9d", + "language": "Text", + "lines": 79, + "truncated": false, + "block": 9, + "row": 14648 + }, + { + "path": "assets/hooks/hook-PySide6.py", + "sha256": "354eaa70933b796e641d1ca497640b368a43e951ff5fd8b86ebb69e5ce00af93", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 9, + "row": 6462 + }, + { + "path": "assets/hooks/hook-ants.py", + "sha256": "eb41efad5bd5d8275ce0e7ec5abc639aa98b7a545c9786ef9406cb484306a60e", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6542 + }, + { + "path": "assets/hooks/hook-antspyx.py", + "sha256": "3b90b8d58f25d805f3652a65794c6d2cc598e9c80bd8f80c62bbc7576f0bc9e7", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6432 + }, + { + "path": "assets/hooks/hook-dipy.py", + "sha256": "494d6add0f047d537b1aec3e5daaff3bc78428c9104d988300bfce529e0aa6d4", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6421 + }, + { + "path": "assets/hooks/hook-distutils.py", + "sha256": "8f95761cf2f8e8b76e43567458ad4811b51dfeee1a18b629c585124674e617e6", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6442 + }, + { + "path": "assets/hooks/hook-gdown.py", + "sha256": "6e407739b1b9267ddb0c322cdb7f06ba447d7e426ebd12a3b1de377fc25c59ed", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 9, + "row": 6472 + }, + { + "path": "assets/hooks/hook-gevent.py", + "sha256": "20bcf9ece622262e6b040600b0950e772b404682b5ee2c43a0ab07830cacbd6f", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6431 + }, + { + "path": "assets/hooks/hook-nibabel.py", + "sha256": "755a83d624ed9600fea9629d382babae2867cee40118ebc5c8e51fd367832b6b", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6433 + }, + { + "path": "assets/hooks/hook-pydicom.py", + "sha256": "79864a7e4274a53184cb1a56ff04ea0c9d23c1815ef22fcdee53565dac3973cb", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6439 + }, + { + "path": "assets/hooks/hook-raidionicsrads.py", + "sha256": "cb4e6a88ea45da1e8462a82592095833908d240ebd752faf0430d9be69fead8c", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 9, + "row": 6491 + }, + { + "path": "assets/hooks/hook-raidionicsseg.py", + "sha256": "a3272cdb882285aa89b5458e33b63f2301609e3efe483e71b5f8e8169cd20faf", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 9, + "row": 6488 + }, + { + "path": "assets/hooks/hook-rtutils.py", + "sha256": "48104a33cbe5c8b057360a23cec45ac1810c46185d0e481954fcac3e1862128e", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6438 + }, + { + "path": "assets/hooks/hook-scikit-learn.py", + "sha256": "22e188f60a0d900de6877add48db5dcc32d828e11fa53fe1f9ea5cb468dc7dcc", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6449 + }, + { + "path": "assets/hooks/hook-scipy.py", + "sha256": "e013fcadd7beb8651ffbb0744f275a35b1148d6ed7a15eb564e5692c07b67df8", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6429 + }, + { + "path": "assets/hooks/hook-sklearn.py", + "sha256": "d1a6496e3f58fec7fd4135bd494b078e5c91fe5115054cbd01c17ef6dd257ece", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6435 + }, + { + "path": "assets/hooks/hook-statsmodels.py", + "sha256": "9cd59891e5071e83ec95e7b6f8d31ca36b30c548ab0a8e0f995c528ee49567e0", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6447 + }, + { + "path": "assets/hooks/set_recursion_limit.py", + "sha256": "4a514af1089cc83be93d16a8bd711997bf769fabb979b8b66cff5cdb1ad37551", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6335 + }, + { + "path": "build_launcher.py", + "sha256": "cb21c97b7c00e171de121e2e301663c6bb67f44a8072f093b8779cfb1ca3ee96", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 9, + "row": 6503 + }, + { + "path": "gui/LogReaderThread.py", + "sha256": "5ec48ae3e2d7173d370923cab056f4c2a3333fe60871f4ff4551d0a0f1bffa96", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 6990 + }, + { + "path": "gui/RaidionicsMainWindow.py", + "sha256": "71d37ffaa8771cd864698fa8dafbfcdaf973c97eb21ae7bb147369bf5b82feb3", + "language": "Python", + "lines": 551, + "truncated": false, + "block": 9, + "row": 12093 + }, + { + "path": "gui/SinglePatientComponent/CentralAreaExecutionWidget.py", + "sha256": "0e4423744d6297e015ea77f95a5c9c4d4536378871c5bd9d19ccc1507489af6f", + "language": "Python", + "lines": 218, + "truncated": false, + "block": 9, + "row": 10517 + }, + { + "path": "gui/SinglePatientComponent/CentralAreaWidget.py", + "sha256": "68ceae69ead036a13af369fadf09c44af12178522c30f9310b00e4e4c1db38bb", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 10214 + }, + { + "path": "gui/SinglePatientComponent/CentralDisplayArea/CentralDisplayAreaWidget.py", + "sha256": "62f8368b92faefcd8d9d5205a2507ac6dcd6d87e3b982380499f7669fb6c552b", + "language": "Python", + "lines": 348, + "truncated": false, + "block": 9, + "row": 12048 + }, + { + "path": "gui/SinglePatientComponent/CentralDisplayArea/Custom3DView.py", + "sha256": "e13f4774971ab18a1b36b8b7f6fb77c7fcc9a6b9c97a5c9e015b56ca7bfca1fe", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6842 + }, + { + "path": "gui/SinglePatientComponent/CentralDisplayArea/CustomQGraphicsView.py", + "sha256": "83b6444695b7a4e22bae7da9ed8799a2d672d80c61e56c4ecb275b30dbb8dbc5", + "language": "Python", + "lines": 463, + "truncated": false, + "block": 9, + "row": 11980 + }, + { + "path": "gui/SinglePatientComponent/CentralDisplayArea/MultipleTimestamps/MTSCentralDisplayAreaWidget.py", + "sha256": "fcece9c5a272349d2c7d49f0e4f6b2a42e06b16c00d87ea477109abb92efb1e8", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7628 + }, + { + "path": "gui/SinglePatientComponent/CentralDisplayArea/QCollapsibleView.py", + "sha256": "d5b598ea9d61dba2b2dff00c8956622afebb957a966f6b88193728a9305f2cde", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 8205 + }, + { + "path": "gui/SinglePatientComponent/LayersInteractorSidePanel/ActionsInteractor/ActionsInteractorWidget.py", + "sha256": "419c32d5f8fdc6d3f405c56ff2d624c2013fe3c319d98e5c3f19a639f90f81d7", + "language": "Python", + "lines": 536, + "truncated": false, + "block": 9, + "row": 11952 + }, + { + "path": "gui/SinglePatientComponent/LayersInteractorSidePanel/AnnotationLayersInteractor/AnnotationSingleLayerWidget.py", + "sha256": "a36e7ccc92414d03e74186b5cca4260d3b0b38a0ac336d5a592bf0b3522b2362", + "language": "Python", + "lines": 564, + "truncated": false, + "block": 9, + "row": 12055 + }, + { + "path": "gui/SinglePatientComponent/LayersInteractorSidePanel/AnnotationLayersInteractor/AnnotationsLayersInteractor.py", + "sha256": "5df0400678becbd8d2ac8be7ca7ee932f73863385919ea53ccdb6b926db22605", + "language": "Python", + "lines": 238, + "truncated": false, + "block": 9, + "row": 10979 + }, + { + "path": "gui/SinglePatientComponent/LayersInteractorSidePanel/AnnotationLayersInteractor/__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "gui/SinglePatientComponent/LayersInteractorSidePanel/AtlasLayersInteractor/AtlasSingleLayerCollapsibleGroupBox.py", + "sha256": "7fd8689be752170b5cdfc88ced9061a5413e38b0a169aa96238cd671f5523c5d", + "language": "Python", + "lines": 266, + "truncated": false, + "block": 9, + "row": 11184 + }, + { + "path": "gui/SinglePatientComponent/LayersInteractorSidePanel/AtlasLayersInteractor/AtlasSingleLayerWidget.py", + "sha256": "7dfcadf551d7624f7197d8e95c392c5bf302f15569fa9979d28dfefd914d5a59", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 9, + "row": 10687 + }, + { + "path": "gui/SinglePatientComponent/LayersInteractorSidePanel/AtlasLayersInteractor/AtlasesLayersInteractor.py", + "sha256": "19e4fbde99632ab095446c9924cebc91e9946e5edf2c52e01a485b7310bda542", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 9, + "row": 10271 + }, + { + "path": "gui/SinglePatientComponent/LayersInteractorSidePanel/MRIVolumesInteractor/MRISeriesLayerWidget.py", + "sha256": "acdac6491c27fcc8bb8934d22f43415904483e259aeec644550324c96974ee31", + "language": "Python", + "lines": 363, + "truncated": false, + "block": 9, + "row": 11603 + }, + { + "path": "gui/SinglePatientComponent/LayersInteractorSidePanel/MRIVolumesInteractor/MRIVolumesLayerInteractor.py", + "sha256": "a0ee6dd21253a94165bfbea86d8cf1c2a329772f9f094dfb99dac46e296c3398", + "language": "Python", + "lines": 238, + "truncated": false, + "block": 9, + "row": 11059 + }, + { + "path": "gui/SinglePatientComponent/LayersInteractorSidePanel/MRIVolumesInteractor/__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "gui/SinglePatientComponent/LayersInteractorSidePanel/SinglePatientLayersWidget.py", + "sha256": "9acddbed28a3b342480dd4b3642656bada3edabcf180bea63c8dd9468835f973", + "language": "Python", + "lines": 311, + "truncated": false, + "block": 9, + "row": 11274 + }, + { + "path": "gui/SinglePatientComponent/LayersInteractorSidePanel/TimestampsInteractor/TimestampLayerWidget.py", + "sha256": "962ec034a7ca33b5d7a887072d401955e49a8c17d7046d2d97eb2ee17edbbd12", + "language": "Python", + "lines": 313, + "truncated": false, + "block": 9, + "row": 11472 + }, + { + "path": "gui/SinglePatientComponent/LayersInteractorSidePanel/TimestampsInteractor/TimestampsLayerInteractor.py", + "sha256": "eab7ee6ec54d983241a86c2cff2a67548bc3720595860bfc21a9a3122dde6861", + "language": "Python", + "lines": 432, + "truncated": false, + "block": 9, + "row": 12037 + }, + { + "path": "gui/SinglePatientComponent/LayersInteractorSidePanel/__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "gui/SinglePatientComponent/PatientResultsSidePanel/PatientResultsSinglePatientSidePanelWidget.py", + "sha256": "6bf5193ac8d9ea187e8d1ac7ac94c9df09ca60ea8acadd545154a11e02935f2f", + "language": "Python", + "lines": 470, + "truncated": false, + "block": 9, + "row": 12001 + }, + { + "path": "gui/SinglePatientComponent/PatientResultsSidePanel/SinglePatientResultsWidget.py", + "sha256": "52405e71e1a08d49d56dd42b370f9d9af544da0478ab41c43fcd0781219b197e", + "language": "Python", + "lines": 436, + "truncated": false, + "block": 9, + "row": 11760 + }, + { + "path": "gui/SinglePatientComponent/PatientResultsSidePanel/SurgicalReportingWidget.py", + "sha256": "22bb1ac5eebeec34bf13370d8307c7cc57e1f68f87deb46a9719974f5ec95a47", + "language": "Python", + "lines": 641, + "truncated": false, + "block": 9, + "row": 12277 + }, + { + "path": "gui/SinglePatientComponent/PatientResultsSidePanel/TumorCharacteristicsWidget.py", + "sha256": "65186ac3eb00bb88846106529dfd9183d502c9dcb589e5140f9b51b5bcdbc920", + "language": "Python", + "lines": 1068, + "truncated": false, + "block": 9, + "row": 12514 + }, + { + "path": "gui/SinglePatientComponent/PatientResultsSidePanel/__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "gui/SinglePatientComponent/ProcessProgressWidget.py", + "sha256": "c2004316bbb92d65581c32c4d0914b0bd61a078a2ba045b4402d49e486fe24f0", + "language": "Python", + "lines": 324, + "truncated": false, + "block": 9, + "row": 11413 + }, + { + "path": "gui/SinglePatientComponent/SinglePatientWidget.py", + "sha256": "ff46d240a2d2ca5a0b3f0f307c62c92fc72b230ecdb87efb30b5a00718845525", + "language": "Python", + "lines": 342, + "truncated": false, + "block": 9, + "row": 11722 + }, + { + "path": "gui/SinglePatientComponent/__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "gui/StudyBatchComponent/PatientsListingPanel/PatientListingWidgetItem.py", + "sha256": "33710e28299a17aabcdd1bc85c3553e8caf6c593bfe8da0a87eae8303909842d", + "language": "Python", + "lines": 166, + "truncated": false, + "block": 9, + "row": 10130 + }, + { + "path": "gui/StudyBatchComponent/PatientsListingPanel/StudyPatientListingWidget.py", + "sha256": "80d3a84e58d97418462c13be19ea377ff807c6f3fa57ed03ed5045feacb6fa0d", + "language": "Python", + "lines": 220, + "truncated": false, + "block": 9, + "row": 10868 + }, + { + "path": "gui/StudyBatchComponent/PatientsSummaryPanel/StudyPatientsContentSummaryPanelWidget.py", + "sha256": "11ff1986cc0a52f5dbffbcff14ac6f86ddbc3ebae9ea25728e9195ce414b29ad", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 9, + "row": 10043 + }, + { + "path": "gui/StudyBatchComponent/PatientsSummaryPanel/StudyPatientsReportingSummaryWidget.py", + "sha256": "77f3467ded1f57ebce3925464ceac8e7f770e1f1752584621af67b2cfaf023e4", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 9, + "row": 9189 + }, + { + "path": "gui/StudyBatchComponent/PatientsSummaryPanel/StudyPatientsSegmentationSummaryWidget.py", + "sha256": "e3cee8c0e690980e41cc10532a8ebf197cf0fa983511fb901a69e4d1a8bba18e", + "language": "Python", + "lines": 149, + "truncated": false, + "block": 9, + "row": 10495 + }, + { + "path": "gui/StudyBatchComponent/PatientsSummaryPanel/StudyPatientsSummaryPanelWidget.py", + "sha256": "b82bcc9929d5dc3216c3a50733a3879155161049c9f4fca889c123a428bc2001", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 10257 + }, + { + "path": "gui/StudyBatchComponent/StudiesSidePanel/SingleStudyWidget.py", + "sha256": "223412c5084230fe6691d67dff91025cf1d3989f20caedd41d0978e3d15d3fab", + "language": "Python", + "lines": 662, + "truncated": false, + "block": 9, + "row": 12263 + }, + { + "path": "gui/StudyBatchComponent/StudiesSidePanel/StudiesSidePanelWidget.py", + "sha256": "ba2fce9234a34ca9f9e35b39db716c0aa83bd8cd4c647fbd4e54a195b9f330d8", + "language": "Python", + "lines": 310, + "truncated": false, + "block": 9, + "row": 11516 + }, + { + "path": "gui/StudyBatchComponent/StudiesSidePanel/__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "gui/StudyBatchComponent/StudyBatchWidget.py", + "sha256": "c0f5f4cf4d958d36380e375069dc801f3c9d905a0e41593e625ba0a76e396219", + "language": "Python", + "lines": 210, + "truncated": false, + "block": 9, + "row": 11063 + }, + { + "path": "gui/StudyBatchComponent/__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "gui/UtilsWidgets/CustomQDialog/AboutDialog.py", + "sha256": "88422651bbfddbfa6b5eba89ba123b1eae693abaf49adce780b46c08082ccb04", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 9575 + }, + { + "path": "gui/UtilsWidgets/CustomQDialog/ContrastAdjustmentDialog.py", + "sha256": "703b4ff2c211cf348251651840cdfd0a8bd5d5840dfc66a83a3fd7120dd34418", + "language": "Python", + "lines": 189, + "truncated": false, + "block": 9, + "row": 10719 + }, + { + "path": "gui/UtilsWidgets/CustomQDialog/DisplayDICOMMetadataDialog.py", + "sha256": "83e42058f251f8f9535349d053385322dc7fc39520fbd6e2b65fc7e27f229a12", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 8382 + }, + { + "path": "gui/UtilsWidgets/CustomQDialog/ImportDICOMDataQDialog.py", + "sha256": "33d59c2f24d23e31454a28cdca004dbad31bb98466bd0e38c383ffaece7bfcc7", + "language": "Python", + "lines": 525, + "truncated": false, + "block": 9, + "row": 12225 + }, + { + "path": "gui/UtilsWidgets/CustomQDialog/ImportDataQDialog.py", + "sha256": "fbb6a8231218a06fc7ffa17aaaa98ec3e066b44e06801cde753a5fe6ea8de813", + "language": "Python", + "lines": 351, + "truncated": false, + "block": 9, + "row": 11582 + }, + { + "path": "gui/UtilsWidgets/CustomQDialog/ImportFoldersQDialog.py", + "sha256": "a73fcacf94412cefe0953befbb111822f7b8eab5907766fdaeab334a0043e458", + "language": "Python", + "lines": 614, + "truncated": false, + "block": 9, + "row": 12302 + }, + { + "path": "gui/UtilsWidgets/CustomQDialog/KeyboardShortcutsDialog.py", + "sha256": "b40538e1104697d13c8ea88ded97b38598bcbce0fbba933f8d423a229a2f7c56", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 9080 + }, + { + "path": "gui/UtilsWidgets/CustomQDialog/LogsViewerDialog.py", + "sha256": "6815d4832270d5fb654fc29831e450640e4284f76903527ea660bb7c2ec9864f", + "language": "Python", + "lines": 149, + "truncated": false, + "block": 9, + "row": 9772 + }, + { + "path": "gui/UtilsWidgets/CustomQDialog/ResearchCommunityDialog.py", + "sha256": "6b301ce8c5b0cd6fd593758fd6f0b26de65ec5a043741950909593ed88ec5a7a", + "language": "Python", + "lines": 302, + "truncated": false, + "block": 9, + "row": 11590 + }, + { + "path": "gui/UtilsWidgets/CustomQDialog/SavePatientChangesDialog.py", + "sha256": "7df0c6b64d0103d16576899607bda0b81e4b655170003fd32e4f90a5f798639b", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 8821 + }, + { + "path": "gui/UtilsWidgets/CustomQDialog/SoftwareSettingsDialog.py", + "sha256": "64a1a22d0393e71b465727d0688f909eb393181419c83c06e89b2bd6a147b715", + "language": "Python", + "lines": 1738, + "truncated": false, + "block": 9, + "row": 12643 + }, + { + "path": "gui/UtilsWidgets/CustomQDialog/TumorTypeSelectionQDialog.py", + "sha256": "0c01581b7be96e504ecf6de29d4e96b9bcf64836cb973553a6486d9c5cd5ab42", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 9216 + }, + { + "path": "gui/UtilsWidgets/CustomQDialog/VolumeStatisticsDialog.py", + "sha256": "3857a801e8635fad09a8d627944fd59559b43234c3f5bfdde76ea4471e712c8c", + "language": "Python", + "lines": 479, + "truncated": false, + "block": 9, + "row": 11939 + }, + { + "path": "gui/UtilsWidgets/CustomQGroupBox/QCollapsibleGroupBox.py", + "sha256": "2869baff474ca1b82cacc99077aad5d30877d166ddcbbcc54db6a162d4dd30ce", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 9, + "row": 9856 + }, + { + "path": "gui/UtilsWidgets/CustomQGroupBox/QCollapsibleWidget.py", + "sha256": "e76aadf8a11afeefc2498ba8f7f6db9cb590c76d74a34c9d9cb260ac655abee0", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 9865 + }, + { + "path": "gui/UtilsWidgets/CustomQGroupBox/__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "gui/UtilsWidgets/CustomQTableWidget/ContextMenuQTableWidget.py", + "sha256": "e37f1d75337f337101682eddd0bc3d319d9091fdfcccab32a9b56196001fe581", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7507 + }, + { + "path": "gui/UtilsWidgets/CustomQTableWidget/ImportDICOMQTableWidget.py", + "sha256": "258521a38329eed79a5d803001c973d229c41370229d215419643a58f3447078", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 8197 + }, + { + "path": "gui/UtilsWidgets/QCircularProgressBar.py", + "sha256": "d73a70e6ca73d7ff49ae1037b4bf1b8a1cd46ed2f926eb887d4f41bc3b2562d7", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 9, + "row": 9054 + }, + { + "path": "gui/UtilsWidgets/QCustomIconsPushButton.py", + "sha256": "2814088e278b4066479f91a34f76f515620142318423c7be10ed12d22b8df291", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 9839 + }, + { + "path": "gui/UtilsWidgets/QDoubleIconsPushButton.py", + "sha256": "e6bb69dcbcceafcba431910b9047bd0e08528ba86963dc98c7ede158a8533f5a", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 9, + "row": 8618 + }, + { + "path": "gui/UtilsWidgets/QRightIconPushButton.py", + "sha256": "54eac42e84f4a85cb9afe9c224844afd09c8bbbf5e5ca7679bf579b54999a6eb", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7906 + }, + { + "path": "gui/UtilsWidgets/__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "gui/WelcomeWidget.py", + "sha256": "c5cd4c8107b2a6953bbc62e181785daea4699ce5c65e313a0d2e3532a3dfded6", + "language": "Python", + "lines": 374, + "truncated": false, + "block": 9, + "row": 11696 + }, + { + "path": "gui/__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "integration_tests/batch_study_module/test_bm_creation_and_data_import.py", + "sha256": "15b8825ca023939e4cb5a1d98a6acce8c9ed4b06df063ffc14765e90d45472d5", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 9623 + }, + { + "path": "integration_tests/batch_study_module/test_bm_creation_and_dicom_import.py", + "sha256": "6f094250e13df21273e5704071d24159376c7a552586d4857af2bae3483702be", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 9554 + }, + { + "path": "integration_tests/batch_study_module/test_bm_creation_and_edit.py", + "sha256": "d6fadd496975df80ca7435e473b44105c5b27afbcc4cb748f06c34e7225a0af3", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 9, + "row": 8783 + }, + { + "path": "integration_tests/batch_study_module/test_bm_reloading_and_edit.py", + "sha256": "d2c0719e8d1202535824df5f8a9bc8234742d3624f4bec84fb65167b0ef15bbf", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 9350 + }, + { + "path": "integration_tests/single_patient_module/test_sp_creation_and_data_import.py", + "sha256": "5a6e0301240d64db91499909f69b217a1ff8457906ac25ac0b2f29a8edd57783", + "language": "Python", + "lines": 241, + "truncated": false, + "block": 9, + "row": 11384 + }, + { + "path": "integration_tests/single_patient_module/test_sp_creation_and_dicom_import.py", + "sha256": "fb37df8938b3e693143355fabf77b0113ed3b66bfb0825c91eeddafe739f9776", + "language": "Python", + "lines": 290, + "truncated": false, + "block": 9, + "row": 11638 + }, + { + "path": "integration_tests/single_patient_module/test_sp_creation_and_edit.py", + "sha256": "2caf337271719276c545b160f935711dd9105905288192ef3b710f34ada6723f", + "language": "Python", + "lines": 247, + "truncated": false, + "block": 9, + "row": 11428 + }, + { + "path": "integration_tests/single_patient_module/test_sp_reloading_and_edit.py", + "sha256": "efe6add647e3d3cb38456f83fc874bcb19b6a59ebc98369cd65c9d1630b72968", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 9, + "row": 11030 + }, + { + "path": "main.py", + "sha256": "a5db78784e3f357413b809159c301682449c6236734bc322325c4684105fb1fd", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 9, + "row": 8332 + }, + { + "path": "tests/software_launch_test.py", + "sha256": "4e6c967b62059cdd0bd9c8edf7555d38136a6f250d734ddd6b657e2e52e87531", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 8155 + }, + { + "path": "utils/__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "utils/backend_logic.py", + "sha256": "a724937ce6d9b7b9a7ff02270174d61b49247cf2508e9600e6060aeb963cca98", + "language": "Python", + "lines": 273, + "truncated": false, + "block": 9, + "row": 11529 + }, + { + "path": "utils/data_structures/AnnotationStructure.py", + "sha256": "3d71ae48842607ea64d633600be0c94a3eaf45b1829089ab15a4bc294924c13c", + "language": "Python", + "lines": 583, + "truncated": false, + "block": 9, + "row": 12219 + }, + { + "path": "utils/data_structures/AtlasStructure.py", + "sha256": "f0b3df3a1de2265eafebfea3f4f5df766d4da441b56510bfce6a3a4928c6c5a3", + "language": "Python", + "lines": 462, + "truncated": false, + "block": 9, + "row": 12033 + }, + { + "path": "utils/data_structures/InvestigationTimestampStructure.py", + "sha256": "483f974c02c1d58656034531f5b4d324596fd0e9d673a8cd4dde47934bb7588b", + "language": "Python", + "lines": 190, + "truncated": false, + "block": 9, + "row": 10267 + }, + { + "path": "utils/data_structures/MRIVolumeStructure.py", + "sha256": "c7bebe4667ed0645239965a5bd1b50c0964e961c351f9bda65b1eac8247ca0e7", + "language": "Python", + "lines": 623, + "truncated": false, + "block": 9, + "row": 12248 + }, + { + "path": "utils/data_structures/PatientParametersStructure.py", + "sha256": "418e2eab7f51eac395b2f272b469a7eb047400c71ecb8d54ca26f142073841fd", + "language": "Python", + "lines": 1262, + "truncated": false, + "block": 9, + "row": 12572 + }, + { + "path": "utils/data_structures/ReportingStructure.py", + "sha256": "e15f02dc76441b166cfeccde499930857c30faca9b6bfef5fa5f2407dcd04969", + "language": "Python", + "lines": 237, + "truncated": false, + "block": 9, + "row": 10836 + }, + { + "path": "utils/data_structures/StudyParametersStructure.py", + "sha256": "86bf73ca9a874464b12b67d1eed19b53e7a93e8b83350506853a856aacf806af", + "language": "Python", + "lines": 389, + "truncated": false, + "block": 9, + "row": 11900 + }, + { + "path": "utils/data_structures/UserPreferencesStructure.py", + "sha256": "184cd5bf1f930d5aa8789017c577e08dc6d8319934df1d8e55cac54b022f2437", + "language": "Python", + "lines": 438, + "truncated": false, + "block": 9, + "row": 11955 + }, + { + "path": "utils/data_structures/__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "utils/logic/PipelineCreationHandler.py", + "sha256": "afe2b507036c29120ddeab55555835e79d5128cf5b0b82ea7e536680fbe69065", + "language": "Python", + "lines": 701, + "truncated": false, + "block": 9, + "row": 12237 + }, + { + "path": "utils/logic/PipelineResultsCollector.py", + "sha256": "b2e5bba48cc63ec1e5e7aa58157035016451034d14b5cd38387315b1a39b75dc", + "language": "Python", + "lines": 521, + "truncated": false, + "block": 9, + "row": 12411 + }, + { + "path": "utils/models_download.py", + "sha256": "b1ed13597e01a0c2f49051cdba487d3081a714564ec8c9c2349fde302f69ba73", + "language": "Python", + "lines": 173, + "truncated": false, + "block": 9, + "row": 10649 + }, + { + "path": "utils/patient_dicom.py", + "sha256": "a73bed39c9edb3858508256f2b3e506476e3c8c5cc9bc7d18b62f89d58dcdc26", + "language": "Python", + "lines": 686, + "truncated": false, + "block": 9, + "row": 12179 + }, + { + "path": "utils/software_config.py", + "sha256": "6a1e4db8c6a352294d78138e4d85470dd1ceba363ed33b7205e7b686f763a4bd", + "language": "Python", + "lines": 460, + "truncated": false, + "block": 9, + "row": 11962 + }, + { + "path": "utils/utilities.py", + "sha256": "832d4b0eb8cf4502c1e7c7814e9bd53c30d6eb6b8fb90e9f4be4b557662e2b26", + "language": "Python", + "lines": 182, + "truncated": false, + "block": 9, + "row": 10119 + } + ] +} \ No newline at end of file diff --git a/manifests/4f/github.com__fowlerlab__starcall-workflow.json b/manifests/4f/github.com__fowlerlab__starcall-workflow.json new file mode 100644 index 0000000000000000000000000000000000000000..f2fb666ce46ea841b31ebddfe89d7df9aaff1865 --- /dev/null +++ b/manifests/4f/github.com__fowlerlab__starcall-workflow.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/fowlerlab/starcall-workflow", + "url": "https://github.com/FowlerLab/starcall-workflow", + "host": "github.com", + "commit": "f2b486a39a74575ae3f6d7a71a78b9032f66e764", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "2000a3b0d702ea53adafc330b13129b59a14bd6c32bc19001f6b6d938af1a804", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2771 + }, + { + "path": "readme.md", + "sha256": "5a12f5684df4fdb2edd8175a32a703609178f9117fb9315b0ed3dc2159295472", + "language": "Text", + "lines": 928, + "truncated": false, + "block": 9, + "row": 14748 + }, + { + "path": "run.sh", + "sha256": "d2e3e7b037b2af8d08b55709d0f9d2def1180f002dafa25497a4f843a6618a2b", + "language": "Shell", + "lines": 42, + "truncated": false, + "block": 9, + "row": 14227 + } + ] +} \ No newline at end of file diff --git a/manifests/4f/github.com__rvalieris__parallel-fastq-dump.json b/manifests/4f/github.com__rvalieris__parallel-fastq-dump.json new file mode 100644 index 0000000000000000000000000000000000000000..d9605a2003cff1a1a8b1c78ae5c8961505b8251a --- /dev/null +++ b/manifests/4f/github.com__rvalieris__parallel-fastq-dump.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/rvalieris/parallel-fastq-dump", + "url": "https://github.com/rvalieris/parallel-fastq-dump", + "host": "github.com", + "commit": "1719f3a109602039d2bcdc7d61e5983866566d97", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "983ebd5ec811a5e0b3633f753e0f0f847c4dbf52db98ac933c7a8794f9106252", + "language": "License", + "lines": 22, + "truncated": false, + "block": 9, + "row": 2817 + }, + { + "path": "README.rst", + "sha256": "ca05a0a3b2326729916a0f82f5e925a252ba6999932c6b2e78ffe3bc0f853f4c", + "language": "Text", + "lines": 43, + "truncated": false, + "block": 9, + "row": 14542 + }, + { + "path": "setup.py", + "sha256": "b47ba881e68a88231a0cb18e368e238d302ed3427e5d3bcbc24583c2bcccac7b", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 6876 + } + ] +} \ No newline at end of file diff --git a/manifests/4f/zenodo__19124179.json b/manifests/4f/zenodo__19124179.json new file mode 100644 index 0000000000000000000000000000000000000000..b3ecb62fb7fb632f91099773efae6424575615b3 --- /dev/null +++ b/manifests/4f/zenodo__19124179.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19124179", + "url": "10.5281/zenodo.19124179", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "1.rlm_single_task.R", + "sha256": "f230d7d079394110a33c6ce091ad8132cdccfb4b375f67482f7cd9cdb82699c3", + "language": "R", + "lines": 123, + "truncated": false, + "block": 9, + "row": 13308 + }, + { + "path": "2.NMF_random_n30_1711ASD_5pheno_686_genes_overlap_genes.R", + "sha256": "50613b8de2c20f90f176aeb1d4293d469b73b55f9f44e51ba00273d717e39f88", + "language": "R", + "lines": 13, + "truncated": false, + "block": 9, + "row": 12776 + }, + { + "path": "3.run_NMF_with_rank_3_1711ASD_686genes_rlm.R", + "sha256": "5a0902b2020eed0e4f7691bb322355673415b6b72b2aa8e8ce3c711a8d6e033e", + "language": "R", + "lines": 17, + "truncated": false, + "block": 9, + "row": 12792 + } + ] +} \ No newline at end of file diff --git a/manifests/50/github.com__blejzara__cellrda-ls.json b/manifests/50/github.com__blejzara__cellrda-ls.json new file mode 100644 index 0000000000000000000000000000000000000000..e21f8fc62569bcc5bc3d6ddbfe0be7210c1ef0bc --- /dev/null +++ b/manifests/50/github.com__blejzara__cellrda-ls.json @@ -0,0 +1,75 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/blejzara/cellrda-ls", + "url": "https://github.com/blejzara/CellRDA-LS", + "host": "github.com", + "commit": "c76d59f3ca568c1f6dedfc59c38473e5571f0987", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "9f6dfd9820b2fe33300ff6eb182f5ece9f44f13b78d350244f2f673917ab5b09", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2844 + }, + { + "path": "README.MD", + "sha256": "25a9a83c54287247d18284fceee37cf73b521286cfea4f2e1c357063a9df6609", + "language": "Text", + "lines": 180, + "truncated": false, + "block": 9, + "row": 14691 + }, + { + "path": "src/main.c", + "sha256": "77957c49ecbd88a2671aa78b558db856e3e686725fb3e009635d58ab98a5c29b", + "language": "C", + "lines": 1327, + "truncated": false, + "block": 9, + "row": 150 + }, + { + "path": "src/simulation.c", + "sha256": "a1761c1b8c17648e2d3288cd95eb8af77c9d6773405a036bcd583401d85d8f14", + "language": "C", + "lines": 1676, + "truncated": false, + "block": 9, + "row": 152 + }, + { + "path": "src/simulation.h", + "sha256": "aea80aae0d3947659328555bbbd5fe2ded5d26f169e1fc913707582d2a4a9dae", + "language": "C/C++", + "lines": 34, + "truncated": false, + "block": 9, + "row": 1210 + }, + { + "path": "third_party/cJSON/cJSON.c", + "sha256": "aa1b902f9408b101feb650b0a64014a3a2bf7b9783c3c45b7e75d787f3a65df2", + "language": "C", + "lines": 750, + "truncated": false, + "block": 9, + "row": 143 + }, + { + "path": "third_party/cJSON/cJSON.h", + "sha256": "db545d300101d794fe4a4d559d6fa635f3f4a31091e6b0290dba3df118849a66", + "language": "C/C++", + "lines": 149, + "truncated": false, + "block": 9, + "row": 1654 + } + ] +} \ No newline at end of file diff --git a/manifests/50/github.com__cbica__ccl_nmf_prediction.json b/manifests/50/github.com__cbica__ccl_nmf_prediction.json new file mode 100644 index 0000000000000000000000000000000000000000..2a73e4ad50f6e209337c4aad4273d0a120f484f5 --- /dev/null +++ b/manifests/50/github.com__cbica__ccl_nmf_prediction.json @@ -0,0 +1,66 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/cbica/ccl_nmf_prediction", + "url": "https://github.com/CBICA/CCL_NMF_Prediction/tree/main", + "host": "github.com", + "commit": "ec021b5aafc9ddf7ed08f0bca1ce4b673e3bfc4f", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "53d19a372c6523792946222126505307ce577f54a6eb02b09b2619878eba884d", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2862 + }, + { + "path": "README.md", + "sha256": "bf19b7a1a75b15582fde64d8221c208097349f63840db7165ad059e278afabac", + "language": "Text", + "lines": 31, + "truncated": false, + "block": 9, + "row": 14535 + }, + { + "path": "ccl_nmf_prediction/__main__.py", + "sha256": "8b785af8a478be0bbb49a865648df6b1a8f04db7889a8c144d6ff8d4e8a6c3ee", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8268 + }, + { + "path": "ccl_nmf_prediction/utils.py", + "sha256": "a4ebe66d993779c8460aedce6c09cdba27311e7e169d539c5d5b0391d1a4eaee", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 8561 + }, + { + "path": "setup.py", + "sha256": "8c397f5f60148417b8481773dd45301d993da83dc0b1d52c34a49e02e7d523a9", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7709 + }, + { + "path": "test/cmd/run_test.sh", + "sha256": "8a3ef7b8e1460bdbcc51319d160ab461cc7a4016c70e7a3831865277a3ceed3f", + "language": "Shell", + "lines": 7, + "truncated": false, + "block": 9, + "row": 13915 + } + ] +} \ No newline at end of file diff --git a/manifests/51/github.com__endeavoursyc__hi-compass.json b/manifests/51/github.com__endeavoursyc__hi-compass.json new file mode 100644 index 0000000000000000000000000000000000000000..c2fcf70ddf4654f2bab3a001740fdc1d28aa5716 --- /dev/null +++ b/manifests/51/github.com__endeavoursyc__hi-compass.json @@ -0,0 +1,264 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/endeavoursyc/hi-compass", + "url": "https://github.com/EndeavourSyc/Hi-Compass", + "host": "github.com", + "commit": "8ea17100dbc8576a66248f47587cb987e3b7f102", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "b2fe4dbf8ae7fc9df156b52eb9bc73f6e26bffef0b250723eb310df4372de8f1", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2797 + }, + { + "path": "README.md", + "sha256": "d8301700dcb75d2b626d0cde6d5a8e890f4070c2778981e485e5d279a67969fa", + "language": "Text", + "lines": 508, + "truncated": false, + "block": 9, + "row": 14741 + }, + { + "path": "hicompass/__init__.py", + "sha256": "1fb4fbd1bb96c14ae3c646e7aaf8154b2c30618dacc65981136539e2377a225a", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6350 + }, + { + "path": "hicompass/cli.py", + "sha256": "2a8cead83388ff0e293d713a788ffe16687978989fd357f26468444067367b09", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 8154 + }, + { + "path": "hicompass/commands/__init__.py", + "sha256": "17cfee701711d0cff792ceaed394ceb3145af6b3a8056050c4840e9b8898b620", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6523 + }, + { + "path": "hicompass/commands/predicting.py", + "sha256": "5caf2ba8d834d4ee2e2630050ef24876ca67a5904acdc61436df8b42afa5e312", + "language": "Python", + "lines": 283, + "truncated": false, + "block": 9, + "row": 10466 + }, + { + "path": "hicompass/commands/preprocess_atac.py", + "sha256": "1eb8da63691f27f6efeb53246f695b467092a0ea4c7b5f5d996c4ce2e8fbdb1d", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 9, + "row": 8977 + }, + { + "path": "hicompass/commands/preprocess_hic_norm.py", + "sha256": "adc30f03f1d1a1161b87579b9806bb896ed5a71a68cb9d44c98be35a0fac1d33", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 9327 + }, + { + "path": "hicompass/commands/preprocess_hic_to_npz.py", + "sha256": "b778bd5343302ee236fc18deefc5b818633b263d1b30ab0c25cc75ffc2e3ff7c", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 8031 + }, + { + "path": "hicompass/commands/training.py", + "sha256": "f746a4749dd298d877228bcdcc04bcb67e5bf8f41e786ea4ff076bf6be5023c0", + "language": "Python", + "lines": 453, + "truncated": false, + "block": 9, + "row": 11421 + }, + { + "path": "hicompass/predicting/PredictDataset.py", + "sha256": "4d1491ac85c8c037eb7ba12ad9109e495753a812e67af38cf5556f145b87c3dc", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 9, + "row": 10276 + }, + { + "path": "hicompass/predicting/PredictModel.py", + "sha256": "268860cf8f0e92234e80eb18b6dc74be3ec6981bfafe0128155c77d38d1d1689", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7826 + }, + { + "path": "hicompass/predicting/__init__.py", + "sha256": "57c70eaaf2074de9e35a98c74e202762d135db87b9b42d452e2dff27d84433f2", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6486 + }, + { + "path": "hicompass/predicting/blocks.py", + "sha256": "115970a67b4eb08ba86799158287a99d86b83ec9efc00c01c2dfc2d50b0bf578", + "language": "Python", + "lines": 457, + "truncated": false, + "block": 9, + "row": 11652 + }, + { + "path": "hicompass/predicting/chromosome_dataset_predict.py", + "sha256": "f8b5bd28bde0ed75ff152132647ce9d7867d295f210d33f5f9b2d521c3ee6b2f", + "language": "Python", + "lines": 161, + "truncated": false, + "block": 9, + "row": 10044 + }, + { + "path": "hicompass/predicting/data_feature.py", + "sha256": "f68aa34d707b82deea75eacb93895cd93e6f68dffa32b265183288f68d41e778", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 9, + "row": 10003 + }, + { + "path": "hicompass/predicting/utils.py", + "sha256": "b10c582827ff006467c40e00aabdb2fe998d8525ec2a0bcb0c8da32dde7b0f47", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 9, + "row": 10098 + }, + { + "path": "hicompass/preprocess/__init__.py", + "sha256": "0fdb761f97d79f46495e8b44c6cede62c10fdf6eb20fb79ec39729975ea00b3b", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6546 + }, + { + "path": "hicompass/preprocess/atac.py", + "sha256": "d57995244f0df3f581a73c41f4c04189dbf2d5c239b95d10561e59b8c3fc6c03", + "language": "Python", + "lines": 545, + "truncated": false, + "block": 9, + "row": 11864 + }, + { + "path": "hicompass/preprocess/hic_norm.py", + "sha256": "ae2e123cab0b2f71a923a6e6ac0257bb09ba27f5f12395d5d54496424d2fa0f6", + "language": "Python", + "lines": 636, + "truncated": false, + "block": 9, + "row": 12032 + }, + { + "path": "hicompass/preprocess/hic_to_npz.py", + "sha256": "f92a60cb2f3db16625f74867082cc3b664cd98339b88c3ca8c6ee7c56f86b62b", + "language": "Python", + "lines": 304, + "truncated": false, + "block": 9, + "row": 10925 + }, + { + "path": "hicompass/train/HicompassDataset.py", + "sha256": "03d574bea9bdf8bb81fe8212fa5672954159a908445b429097083eaf956fdd3e", + "language": "Python", + "lines": 916, + "truncated": false, + "block": 9, + "row": 12319 + }, + { + "path": "hicompass/train/HicompassModel.py", + "sha256": "2b98c922bb86fdad185f2951be48016a427d32253428b4dfdffebe04be5bcb14", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 9181 + }, + { + "path": "hicompass/train/HicompassTrain.py", + "sha256": "3d48920dfa62e7ffa3a6a18c0e8042f6fef65f8ae456ff20c70382b34e6148b2", + "language": "Python", + "lines": 547, + "truncated": false, + "block": 9, + "row": 12043 + }, + { + "path": "hicompass/train/__init__.py", + "sha256": "2c3763c00e42380c95adf5134a3679a961a78cf77674ad1e3834b0a2a45d1181", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6528 + }, + { + "path": "hicompass/train/blocks.py", + "sha256": "115970a67b4eb08ba86799158287a99d86b83ec9efc00c01c2dfc2d50b0bf578", + "language": "Python", + "lines": 457, + "truncated": false, + "block": 9, + "row": 11652 + }, + { + "path": "hicompass/train/data_feature.py", + "sha256": "f68aa34d707b82deea75eacb93895cd93e6f68dffa32b265183288f68d41e778", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 9, + "row": 10003 + }, + { + "path": "setup.py", + "sha256": "47efb73115f7a47213cb4b6c298b79226030f5ad59b4ee9c90711a37323571b9", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 7608 + } + ] +} \ No newline at end of file diff --git a/manifests/51/github.com__neuroprosthetics-lab__srinivasan-speech-modes.json b/manifests/51/github.com__neuroprosthetics-lab__srinivasan-speech-modes.json new file mode 100644 index 0000000000000000000000000000000000000000..05d2a7e98433f6739b577ee44cb1663909cb766f --- /dev/null +++ b/manifests/51/github.com__neuroprosthetics-lab__srinivasan-speech-modes.json @@ -0,0 +1,201 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/neuroprosthetics-lab/srinivasan-speech-modes", + "url": "https://github.com/Neuroprosthetics-Lab/srinivasan-speech-modes", + "host": "github.com", + "commit": "4f73ec463ffe5a52366aab3257729976a8594fa3", + "license": "CC-BY-NC-SA-4.0", + "license_confirmed_by": "license file License.md", + "redistribution": "with_conditions", + "files": [ + { + "path": "License.md", + "sha256": "bd6db54b2b6886cd156bb26c3f38aafbee8f21b74db364bfbe76bfdca77db522", + "language": "License", + "lines": 14, + "truncated": false, + "block": 9, + "row": 2894 + }, + { + "path": "README.md", + "sha256": "62beb87d4875e69c1b029f33c25e52a4253fb87be3c73c3fbfe0544d5b60d690", + "language": "Text", + "lines": 43, + "truncated": false, + "block": 9, + "row": 14574 + }, + { + "path": "analyses_scripts/ch_dropping.py", + "sha256": "e1fa2788cd39a3434545784e72a4e12dd764043022484a80f2b1ed0e5fb65387", + "language": "Python", + "lines": 313, + "truncated": false, + "block": 9, + "row": 11424 + }, + { + "path": "analyses_scripts/ch_encoding_loudness.py", + "sha256": "4b718ab441c7c96134e90f87d05eddc37501f18d55dda4b1a7d058043da4fc8c", + "language": "Python", + "lines": 319, + "truncated": false, + "block": 9, + "row": 11312 + }, + { + "path": "analyses_scripts/ch_encoding_word.py", + "sha256": "37365d708bb10fe23b9a8b81b071f25cb651f7406f2c26a0297492d7060a9d76", + "language": "Python", + "lines": 316, + "truncated": false, + "block": 9, + "row": 11306 + }, + { + "path": "analyses_scripts/functions.py", + "sha256": "0e7b75a1d23209beb0c02a8540c4b1e7ad493529e2cac763ad5247ece269c2a6", + "language": "Python", + "lines": 354, + "truncated": false, + "block": 9, + "row": 11476 + }, + { + "path": "analyses_scripts/ol_classification.py", + "sha256": "0a66e82eeaedf31ad32d8293b4399fc8c6da33d5949b1c22c9d78867cf501406", + "language": "Python", + "lines": 431, + "truncated": false, + "block": 9, + "row": 11831 + }, + { + "path": "analyses_scripts/ol_striding_classification.py", + "sha256": "36d82c48a97225c841e1d84b7400439115c0c016f06fc240647d28a7700a758d", + "language": "Python", + "lines": 626, + "truncated": false, + "block": 9, + "row": 12350 + }, + { + "path": "analyses_scripts/pca.py", + "sha256": "27bdb81eb93585d8c7e486d5f63eae6f6231d632e45b81a05c231efe64c6da03", + "language": "Python", + "lines": 250, + "truncated": false, + "block": 9, + "row": 10845 + }, + { + "path": "analyses_scripts/psth.py", + "sha256": "e11e51f092460df4585abef2c0fa7dc007627d230b5eebbaf252f5033ef147a1", + "language": "Python", + "lines": 583, + "truncated": false, + "block": 9, + "row": 12249 + }, + { + "path": "analyses_scripts/speech_duration.py", + "sha256": "3177bbf1a71ce2527af0b17f0c54e56633de7d37cde09c3af49bc81ddf3192b0", + "language": "Python", + "lines": 274, + "truncated": false, + "block": 9, + "row": 10961 + }, + { + "path": "plotting_scripts/ch_dropping.py", + "sha256": "276d46396072676046aca6a3a0a5094d706fcdff2cd61acf1feb7085381ca041", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 8965 + }, + { + "path": "plotting_scripts/ch_encoding.py", + "sha256": "fc26cebb31f74dd752dc8067ba3aebf3729952e287cc83aace8c4f13d12ee71b", + "language": "Python", + "lines": 185, + "truncated": false, + "block": 9, + "row": 10297 + }, + { + "path": "plotting_scripts/dpca.py", + "sha256": "ee6d73a3f9211fb51ea1701110bbf0a8f88c3da4a030c2bff4478c46c335f268", + "language": "Python", + "lines": 288, + "truncated": false, + "block": 9, + "row": 11311 + }, + { + "path": "plotting_scripts/ol_classification.py", + "sha256": "9460c1f60913ed5d6e6ab5baf43ccc73c2e856e9a76126e581bf1eca6fad5a79", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 9, + "row": 10243 + }, + { + "path": "plotting_scripts/ol_striding_classification.py", + "sha256": "2bed794692c3d4e8fc1505a1040707d67aaa281f426df258cbce050f5f53c784", + "language": "Python", + "lines": 351, + "truncated": false, + "block": 9, + "row": 11914 + }, + { + "path": "plotting_scripts/pca.py", + "sha256": "89ff45448bec8c34c1065464f76ff4b9230926e835b25d52c3356c2755f03168", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 9, + "row": 9428 + }, + { + "path": "plotting_scripts/psth.py", + "sha256": "9e415dffb893fcf8e0d1113ad9511ea7bee84a0283cce75505061eb9e18e04f4", + "language": "Python", + "lines": 384, + "truncated": false, + "block": 9, + "row": 11878 + }, + { + "path": "plotting_scripts/single_unit_psth_tuning.py", + "sha256": "f3a4153039d87e7c318298952016fb5bb364916b711df68beb8fff0cf73ba23d", + "language": "Python", + "lines": 327, + "truncated": false, + "block": 9, + "row": 11795 + }, + { + "path": "plotting_scripts/speech_breath_analyses.py", + "sha256": "31b8bbd0f01dd6f987bd544a938b35bc79c6f8224aa5d2a30f9a637781477f17", + "language": "Python", + "lines": 451, + "truncated": false, + "block": 9, + "row": 11958 + }, + { + "path": "plotting_scripts/speech_duration.py", + "sha256": "3bf080ddad488b32cb85f2c686126a271582b1ad2bdb41f21c289d8d24b1aed7", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 9, + "row": 10694 + } + ] +} \ No newline at end of file diff --git a/manifests/52/github.com__antoniofs23__reverse-correlation-demo.json b/manifests/52/github.com__antoniofs23__reverse-correlation-demo.json new file mode 100644 index 0000000000000000000000000000000000000000..541aff1b8063059499693165c6f7cb18c508998f --- /dev/null +++ b/manifests/52/github.com__antoniofs23__reverse-correlation-demo.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/antoniofs23/reverse-correlation-demo", + "url": "https://github.com/antoniofs23/reverse-correlation-demo", + "host": "github.com", + "commit": "dbb38c87f8a07100c514c25fe5959c1bff8f70e6", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "RC_DEMO_AF.ipynb", + "sha256": "0a02ae0188b4154f379f7a4d1f61d19da7acb12e6a2910870b65762698b086d9", + "language": "Jupyter", + "lines": 374, + "truncated": false, + "block": 9, + "row": 2536 + }, + { + "path": "README.md", + "sha256": "38f8e8de22d2d9e890d3ce37395ec36a28454b18b25421abf8ed14fe1845492b", + "language": "Text", + "lines": 5, + "truncated": false, + "block": 9, + "row": 14456 + } + ] +} \ No newline at end of file diff --git a/manifests/52/github.com__francescoalemanno__kisssmoothing.jl.json b/manifests/52/github.com__francescoalemanno__kisssmoothing.jl.json new file mode 100644 index 0000000000000000000000000000000000000000..c10c070d2bb82ccbb867d80d117b8ee775fafd56 --- /dev/null +++ b/manifests/52/github.com__francescoalemanno__kisssmoothing.jl.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/francescoalemanno/kisssmoothing.jl", + "url": "https://github.com/francescoalemanno/KissSmoothing.jl", + "host": "github.com", + "commit": "4f2110c57e5d0868d4f35ca4dd487f73a296ae68", + "license": "MIT", + "license_confirmed_by": "license file LICENSE.md", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.md", + "sha256": "7159beb520eb11d59668db3c0f42c374c0c05a676c0236586111b63bc950d337", + "language": "License", + "lines": 22, + "truncated": false, + "block": 9, + "row": 2866 + }, + { + "path": "README.md", + "sha256": "72ae61852a5366bf2162df5b2fb80c379b067b079f1d0ce95b43eca0da685880", + "language": "Text", + "lines": 229, + "truncated": false, + "block": 9, + "row": 14659 + }, + { + "path": "src/KissSmoothing.jl", + "sha256": "2123ea5ccf328ec611396990bd0c505a3fc19e256ba0e71754b96b879860402b", + "language": "Julia", + "lines": 298, + "truncated": false, + "block": 9, + "row": 2162 + }, + { + "path": "test/runtests.jl", + "sha256": "ea731ca46d65a12b03e77a48fdc8c55d34cf4dfd2cc1531011507e954c548587", + "language": "Julia", + "lines": 96, + "truncated": false, + "block": 9, + "row": 2142 + } + ] +} \ No newline at end of file diff --git a/manifests/54/figshare__29298167.json b/manifests/54/figshare__29298167.json new file mode 100644 index 0000000000000000000000000000000000000000..37a85f9ac5ddc606c7e2b2517226dce9e0c8513e --- /dev/null +++ b/manifests/54/figshare__29298167.json @@ -0,0 +1,84 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "figshare:29298167", + "url": "10.6084/m9.figshare.29298167", + "host": "figshare.com", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "AA_Closed_CLA.R", + "sha256": "c4a5cd5d1dbd2e157930e6a9368b5675fa2d9ee53a74c8e268c900e21953b9ec", + "language": "R", + "lines": 73, + "truncated": false, + "block": 9, + "row": 13074 + }, + { + "path": "AA_Closed_P.R", + "sha256": "2eb9923d385c418d93742524528a0982112609781c7e9e1fbe6b32df30c8eba0", + "language": "R", + "lines": 32, + "truncated": false, + "block": 9, + "row": 12841 + }, + { + "path": "AA_Closed_POT.R", + "sha256": "7d92d2d298e5504480d2431464b0de90770bb6b5b65f90936f21ef79e5a07bcd", + "language": "R", + "lines": 73, + "truncated": false, + "block": 9, + "row": 13075 + }, + { + "path": "CLA_Z.sh", + "sha256": "cfc77c4715bd442fecf23f208bd663ac39cbb8904744a7b2e124665d45a61ebf", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14042 + }, + { + "path": "POT_Z.sh", + "sha256": "a0f579ddaabbc50851225d2b3ba796100a0c39a03c512a0ecf870fc847ef0049", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14040 + }, + { + "path": "P_Z.sh", + "sha256": "6561e8b96d3af0f8bad2ad0f3aadd692de71d1531685492475940f6817c2fba5", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14036 + }, + { + "path": "Pore_Z.sh", + "sha256": "8d8f9e9e01eecf1992083dd6e514d8e663cf33c8658993c5b88e005d18f92f65", + "language": "Shell", + "lines": 32, + "truncated": false, + "block": 9, + "row": 14139 + }, + { + "path": "README", + "sha256": "cfaf9cde99641001f810237c1e5f1bd20dd27f58ce724aedcba66676d9cdb62a", + "language": "Text", + "lines": 21, + "truncated": false, + "block": 9, + "row": 14486 + } + ] +} \ No newline at end of file diff --git a/manifests/54/github.com__choderalab__pymbar.json b/manifests/54/github.com__choderalab__pymbar.json new file mode 100644 index 0000000000000000000000000000000000000000..e2c320e012bbb43adffd52f71c0bd6f86117fc0e --- /dev/null +++ b/manifests/54/github.com__choderalab__pymbar.json @@ -0,0 +1,363 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/choderalab/pymbar", + "url": "https://github.com/choderalab/pymbar/tree/4.0.3", + "host": "github.com", + "commit": "ed40ec3bbef03bb08938ad1a74d459b0d1ab81f7", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "b06216b25962856729369804671b10ac7daed2237597f285abc540c363c19da2", + "language": "License", + "lines": 7, + "truncated": false, + "block": 9, + "row": 2857 + }, + { + "path": "README.md", + "sha256": "e22f9a18d567757aa27294672561183080cb7dde1ca146cc302a9c15df3b6858", + "language": "Text", + "lines": 155, + "truncated": false, + "block": 9, + "row": 14692 + }, + { + "path": "devtools/conda-recipe/build.sh", + "sha256": "77325d3647b2d5dcde886c706aa490bbdd603bcd63c71007a7af0795dbb0b3ac", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 9, + "row": 13927 + }, + { + "path": "devtools/travis-ci/after_success.sh", + "sha256": "f5bb063d19e69b1b681096e22c9555ac1d5005ab77d1d1aa4df829054da5a5fd", + "language": "Shell", + "lines": 43, + "truncated": false, + "block": 9, + "row": 14172 + }, + { + "path": "devtools/travis-ci/install.sh", + "sha256": "3202a142539d69708e53e89ee67a326f0d218ecf2add596ea7ae32ca9f64412c", + "language": "Shell", + "lines": 25, + "truncated": false, + "block": 9, + "row": 14117 + }, + { + "path": "devtools/travis-ci/push-docs-to-s3.py", + "sha256": "ef68d48bae6c0ec554887ed0e960031e4fb56295b609dc119d5d50d535295063", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7446 + }, + { + "path": "docs/conf.py", + "sha256": "cd801203e0dcec5c209268b52d064448a74845f490df53a6a9f50308cbf5fd60", + "language": "Python", + "lines": 328, + "truncated": false, + "block": 9, + "row": 10921 + }, + { + "path": "examples/constant-force-optical-trap/extract-data.py", + "sha256": "7817545544df7ceaad64d1f6340d8554386eabe3e0b2ff0fc3bee95f67a6ab0b", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 9088 + }, + { + "path": "examples/constant-force-optical-trap/force-bias-optical-trap.py", + "sha256": "44db29e558bfde12e253c674c83971cf3d8aec9cff8fb52286ba8c8258be5672", + "language": "Python", + "lines": 398, + "truncated": false, + "block": 9, + "row": 11481 + }, + { + "path": "examples/harmonic-oscillators/harmonic-oscillators-distributions.py", + "sha256": "65a887c8904dc02b3b8b930925f91f324b3a2c7d688b7037efa299fc82f5ae37", + "language": "Python", + "lines": 347, + "truncated": false, + "block": 9, + "row": 11226 + }, + { + "path": "examples/harmonic-oscillators/harmonic-oscillators.py", + "sha256": "b93e8350e48008fad4d97e4bdc7f5cdef9605a29321915f534729476dbfda34e", + "language": "Python", + "lines": 1005, + "truncated": false, + "block": 9, + "row": 12347 + }, + { + "path": "examples/heat-capacity/heat-capacity.py", + "sha256": "fe27324b9f459362edd4d7ce169f9e0681ea1c4a2dd441456f3e5a4dfdf97700", + "language": "Python", + "lines": 519, + "truncated": false, + "block": 9, + "row": 11801 + }, + { + "path": "examples/parallel-tempering-2dfes/parallel-tempering-2dfes.py", + "sha256": "a3427ce73957c6987879d1b5fd2269fbee5f4701d196c867cd4b04e607552931", + "language": "Python", + "lines": 331, + "truncated": false, + "block": 9, + "row": 11414 + }, + { + "path": "examples/umbrella-sampling-fes/umbrella-sampling-advanced-fes.py", + "sha256": "4ce9e04ff9f7c92a8f4fcbf16339907b2b0fc2bb54afbea4f5d5dfbfe798ed1d", + "language": "Python", + "lines": 511, + "truncated": false, + "block": 9, + "row": 11828 + }, + { + "path": "examples/umbrella-sampling-fes/umbrella-sampling.py", + "sha256": "b641b0447673d5fc6222cc521bb90d7d6b0e5b5d16615baaee1b49a45a81ed3d", + "language": "Python", + "lines": 179, + "truncated": false, + "block": 9, + "row": 10191 + }, + { + "path": "examples/umbrella-sampling-fes/wham/dowham.pl", + "sha256": "874ec716bfbc94dc6fbabcd4c5710deae7eef44a96be717cf7006709ad0c6a80", + "language": "Perl", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6034 + }, + { + "path": "examples/umbrella-sampling-fes/wham/setupwham.pl", + "sha256": "e817b4a773d830dfc1642439c8726e1f8a13b154a84a4546dce685117823ac39", + "language": "Perl", + "lines": 37, + "truncated": false, + "block": 9, + "row": 6036 + }, + { + "path": "pymbar/__init__.py", + "sha256": "f5806f5cd9fe756c5ddcedfe245d2328d111dd1daa8eb943c63c0c061065c5f0", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7750 + }, + { + "path": "pymbar/confidenceintervals.py", + "sha256": "c8969356bc0ab5fb4f77079a6098029c3061ebc1312301dee7bb112b7ac23cc4", + "language": "Python", + "lines": 460, + "truncated": false, + "block": 9, + "row": 11553 + }, + { + "path": "pymbar/fes.py", + "sha256": "71fb1920640e1ada15031634632d8c5688cb13d8b90cc466c270645b64f0e6ee", + "language": "Python", + "lines": 2477, + "truncated": false, + "block": 9, + "row": 12650 + }, + { + "path": "pymbar/mbar.py", + "sha256": "76c85656c06504b4c4d631ca2e357de43b9666a4b303c9dffa0c5ee9edd70442", + "language": "Python", + "lines": 1989, + "truncated": false, + "block": 9, + "row": 12623 + }, + { + "path": "pymbar/mbar_solvers.py", + "sha256": "e48b6a736cb29e1401a25db05c4d95f99174062bfc55a7a1841121f11586b2d1", + "language": "Python", + "lines": 1200, + "truncated": false, + "block": 9, + "row": 12444 + }, + { + "path": "pymbar/other_estimators.py", + "sha256": "be596a1a1081becca4989d98eb374bb9d2175d3c9353c63f0969b9cd145b86ee", + "language": "Python", + "lines": 719, + "truncated": false, + "block": 9, + "row": 12201 + }, + { + "path": "pymbar/tests/test_bar.py", + "sha256": "5d8c60a4222e16d49c1dce71b71030b1731b99ab06b667b63124fb2fef303c8b", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 9222 + }, + { + "path": "pymbar/tests/test_covariance.py", + "sha256": "04db5232d93c07a61ea9dfadae7b438a4bf0e580eda8c946ca872689722b7817", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7283 + }, + { + "path": "pymbar/tests/test_exp.py", + "sha256": "11a4fbad46d16cb6f4c4e9c5abcf0199a8b17fb55771210781349064f723db6b", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 9, + "row": 8748 + }, + { + "path": "pymbar/tests/test_fes.py", + "sha256": "8581016ca326ba2ee3468437b54aca6e6c99192dbd18c11ebf029ee02f400136", + "language": "Python", + "lines": 558, + "truncated": false, + "block": 9, + "row": 11745 + }, + { + "path": "pymbar/tests/test_mbar.py", + "sha256": "6978202990743d48b15570360c4f5bd37a433c73c61a47c6fef69c866d1127a0", + "language": "Python", + "lines": 578, + "truncated": false, + "block": 9, + "row": 11867 + }, + { + "path": "pymbar/tests/test_mbar_solvers.py", + "sha256": "a4b81674c77c4262bbe2107c9c9c98dbb3e97afac43eed131f0a8a0f9473a69e", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 9, + "row": 9185 + }, + { + "path": "pymbar/tests/test_timeseries.py", + "sha256": "e483c912d094c38a5c275d26c898d3fc518573a79a00f4e76601b4e6062eb1ac", + "language": "Python", + "lines": 178, + "truncated": false, + "block": 9, + "row": 10010 + }, + { + "path": "pymbar/tests/test_utils.py", + "sha256": "f0296bdcb9136fadf66a54298dce3af0b798da460a5550c76556052b3a296db0", + "language": "Python", + "lines": 241, + "truncated": false, + "block": 9, + "row": 10173 + }, + { + "path": "pymbar/testsystems/__init__.py", + "sha256": "cc9da3cae6ab84355402d49824679e3bd26e1a282293488c4e02b47c815fcf42", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 9, + "row": 6634 + }, + { + "path": "pymbar/testsystems/exponential_distributions.py", + "sha256": "67858f149057734970510429f7abc0c9422d5ac3bff20cda60035224b4535b1d", + "language": "Python", + "lines": 246, + "truncated": false, + "block": 9, + "row": 10603 + }, + { + "path": "pymbar/testsystems/gaussian_work.py", + "sha256": "b28a14d68bb5558fa84ddc1ed264808c587e098e5a0c8b56f8596d8c333bcb7d", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 8854 + }, + { + "path": "pymbar/testsystems/harmonic_oscillators.py", + "sha256": "7e66ff03b6462f1c9b84edb3f176a83d9cbd4cc74c957a7267467f01685149c6", + "language": "Python", + "lines": 261, + "truncated": false, + "block": 9, + "row": 10780 + }, + { + "path": "pymbar/testsystems/timeseries.py", + "sha256": "d9a5e97645ce8d59a6ffc91d4859694695133f486c70d2570a96592bf1fc832f", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 8181 + }, + { + "path": "pymbar/timeseries.py", + "sha256": "b375525c9f3f151c006d6eb2eb7898a204c834c603eb8d48b1e8a02841dd0f2a", + "language": "Python", + "lines": 970, + "truncated": false, + "block": 9, + "row": 12337 + }, + { + "path": "pymbar/utils.py", + "sha256": "faeba549fc57efe4238e83e8862dbe7b75c537b48b37396eb15a30b2c6976f42", + "language": "Python", + "lines": 421, + "truncated": false, + "block": 9, + "row": 11258 + }, + { + "path": "pymbar/utils_for_testing.py", + "sha256": "f0f9b08ad7cd38bf4f4fb63796364222d0d2c40cef817b796e7b4685c1cd408b", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8356 + } + ] +} \ No newline at end of file diff --git a/manifests/54/github.com__gillislab__pymn.json b/manifests/54/github.com__gillislab__pymn.json new file mode 100644 index 0000000000000000000000000000000000000000..0ff66307eb88f5462787852a6e66380448ba6961 --- /dev/null +++ b/manifests/54/github.com__gillislab__pymn.json @@ -0,0 +1,210 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/gillislab/pymn", + "url": "https://github.com/gillislab/pyMN", + "host": "github.com", + "commit": "6a2ef103b759d8f2a70a4b9fe6db330035ebdbb6", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d3a172acb0afde7cd57b0c410eea988b86f90ff05a6e4f98d5bc64cc933bde11", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2768 + }, + { + "path": "README.md", + "sha256": "901c9469da767a6ea17a266dd24d1abb1e19f23a3e170e960b9917b69b6cf558", + "language": "Text", + "lines": 56, + "truncated": false, + "block": 9, + "row": 14555 + }, + { + "path": "data/biccn.py", + "sha256": "039914752c1ca41daa31688c6f0abbd462710a68b7dec9ec47818e854c50581a", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 9, + "row": 10277 + }, + { + "path": "data/hemberg.R", + "sha256": "d4edec32e223f2aa0b51032834b1ef3025c0269155db70e864ef1e9e10f47c17", + "language": "R", + "lines": 28, + "truncated": false, + "block": 9, + "row": 12818 + }, + { + "path": "data/hemberg.py", + "sha256": "74379ca571de21dc9b9559083f1d32723b29d68fd96176c8c278f0d2b12e57d3", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6801 + }, + { + "path": "data/tasic.R", + "sha256": "8c0c9bc6bd282dd447ab210dbb15fd7fed949bcb703abf6ae94e710e6c9c16cd", + "language": "R", + "lines": 8, + "truncated": false, + "block": 9, + "row": 12761 + }, + { + "path": "data/tasic.py", + "sha256": "604a4597e87c53618eb407c7403dfc14d210b93dc2ebf11fb097f3d301045058", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6620 + }, + { + "path": "notebooks/.ipynb_checkpoints/protocol1_cluster_replicability-checkpoint.ipynb", + "sha256": "4677917946ac0f886f4d07682fb6e8fbedcc4389b9659ca7356c2a6c12d0c143", + "language": "Jupyter", + "lines": 272, + "truncated": false, + "block": 9, + "row": 2597 + }, + { + "path": "notebooks/protocol1_cluster_replicability.ipynb", + "sha256": "87b88d89b7c0e07c954f923d66e54c01163a547bebafcf7749a0d8c16cc11f94", + "language": "Jupyter", + "lines": 268, + "truncated": false, + "block": 9, + "row": 2631 + }, + { + "path": "notebooks/protocol2_pretrained_reference.ipynb", + "sha256": "154135da0da330d388521b4dfd8caa11b4dabe1a355bf9b5b0b801d4aaced771", + "language": "Jupyter", + "lines": 252, + "truncated": false, + "block": 9, + "row": 2567 + }, + { + "path": "notebooks/protocol3_functional_characterization.ipynb", + "sha256": "f432cb3cabe0379fb0a9243ebacc8697cc93530930bb15541c377672df78f4e9", + "language": "Jupyter", + "lines": 176, + "truncated": false, + "block": 9, + "row": 2475 + }, + { + "path": "pymn/MetaNeighbor.py", + "sha256": "9e30400ea22b09533b3e45bfba6514e43c7d1c598ee061a9c498b1d3b58b1f49", + "language": "Python", + "lines": 245, + "truncated": false, + "block": 9, + "row": 10594 + }, + { + "path": "pymn/MetaNeighborUS.py", + "sha256": "f0791b28b86bfca94cbd96014156861339683c0cbc7d959ff88f0b45c265a9cc", + "language": "Python", + "lines": 430, + "truncated": false, + "block": 9, + "row": 11693 + }, + { + "path": "pymn/__init__.py", + "sha256": "f73280bcd30531f49dd67f1be8e620a139f7c32fd7b43a936ceef0dd5083ec95", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6682 + }, + { + "path": "pymn/metaClusters.py", + "sha256": "26c980594aebe9d21250db41885b839062d557cc542b2e175a8bae6203e69ea3", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 9, + "row": 10000 + }, + { + "path": "pymn/plotting.py", + "sha256": "5b43c17fe4a4d4c14a12f767fd62d4ca62afd0f91ee0708c91064b9fe4fa1769", + "language": "Python", + "lines": 716, + "truncated": false, + "block": 9, + "row": 12138 + }, + { + "path": "pymn/splitClusters.py", + "sha256": "03df4c3b6f254a246a38112e68f478fbbd8f7212b90ba50c9aa4e50931241e31", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 9, + "row": 9669 + }, + { + "path": "pymn/topHits.py", + "sha256": "d0dceb294f19aa7d8ec22bedabcdcc2522f28e6fadc7cc1591220b33067cb2e2", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 9551 + }, + { + "path": "pymn/trainModel.py", + "sha256": "ec3507d48f1867550f0c826da976f1475a5cca9f17ad6f04c28b114b6e23962a", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7994 + }, + { + "path": "pymn/utils.py", + "sha256": "dd6b1778e0a364369e14de9006c54e0d01d189e5af1cc88551bed295fed69afa", + "language": "Python", + "lines": 248, + "truncated": false, + "block": 9, + "row": 10390 + }, + { + "path": "pymn/variableGenes.py", + "sha256": "e20a02f31dfd47f79e7585a75d8eb93cf17010f06e222ea571d624afc6c88eec", + "language": "Python", + "lines": 163, + "truncated": false, + "block": 9, + "row": 9528 + }, + { + "path": "setup.py", + "sha256": "89727f179f7f1a299d1b8062948239185e9c0ff038179d83053a6b49d15441e4", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6691 + } + ] +} \ No newline at end of file diff --git a/manifests/54/github.com__jyyulab__netbid.json b/manifests/54/github.com__jyyulab__netbid.json new file mode 100644 index 0000000000000000000000000000000000000000..df12831937da2355b5ac5ca7c43c513c0306bc18 --- /dev/null +++ b/manifests/54/github.com__jyyulab__netbid.json @@ -0,0 +1,138 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/jyyulab/netbid", + "url": "https://github.com/jyyulab/NetBID", + "host": "github.com", + "commit": "5defa454d600b94f5dd6d1f9f4428f99759a6821", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "IBC_CCDI/cloudAppNetBID.R", + "sha256": "925462dc4ad78a62229f81cbcd2647b6a37906540297286ea99a3e8fbc7caac4", + "language": "R", + "lines": 132, + "truncated": false, + "block": 9, + "row": 13313 + }, + { + "path": "LICENSE", + "sha256": "ff6f78155513b79cba3bb763ea0d94ab30c57f289158c8777abd84dd11641616", + "language": "License", + "lines": 201, + "truncated": false, + "block": 9, + "row": 2904 + }, + { + "path": "R/pipeline_functions.R", + "sha256": "1ee0ec0c3ed12acbbbc98ba3600edcf8368e018ea51a34400c1ed6d897d43d49", + "language": "R", + "lines": 3700, + "truncated": true, + "block": 9, + "row": 13870 + }, + { + "path": "README.md", + "sha256": "0e899146fd7616e19e952e909f425dcbea9619f041a92086047126c45d87db1c", + "language": "Text", + "lines": 74, + "truncated": false, + "block": 9, + "row": 14598 + }, + { + "path": "build_docker_image.sh", + "sha256": "60238dff6cc393b4077c6a442873d5a69fbace32accb233badf1b32313bbb1eb", + "language": "Shell", + "lines": 1, + "truncated": false, + "block": 9, + "row": 13888 + }, + { + "path": "demo_scripts/analysis_and_plot_demo1.R", + "sha256": "ee092dc870f16215248150795f20da61728689df92036ce6200df505a44f59ad", + "language": "R", + "lines": 413, + "truncated": false, + "block": 9, + "row": 13816 + }, + { + "path": "demo_scripts/pipeline_analysis_demo1.R", + "sha256": "bfefd9847eab1e59297c1aea890ae457cb7de0fca3b8bd29e3f02941f0fc7a0f", + "language": "R", + "lines": 170, + "truncated": false, + "block": 9, + "row": 13554 + }, + { + "path": "demo_scripts/pipeline_network_demo1.R", + "sha256": "14d6efcbbfdf8a30aedc3080a1df29713788f38493bb096f8472b2bf8c7d27d3", + "language": "R", + "lines": 151, + "truncated": false, + "block": 9, + "row": 13508 + }, + { + "path": "docs/_site/assets/js/dark-mode-preview.js", + "sha256": "4aa8f5f6d3646531777c9d4d4ef1a61ab9b8d2f1cc95544e5f6b775e875d27b0", + "language": "JavaScript", + "lines": 23, + "truncated": false, + "block": 9, + "row": 2033 + }, + { + "path": "docs/_site/assets/js/just-the-docs.js", + "sha256": "974f96aa41e2ec6a2607280a1a1bc17a076ec4e8950e14d1db28fdd0ab3bc164", + "language": "JavaScript", + "lines": 295, + "truncated": false, + "block": 9, + "row": 2089 + }, + { + "path": "docs/_site/assets/js/vendor/lunr.min.js", + "sha256": "33f0306dbfc1621f918746868e9422776ea9d5bd8e06cae4da4f7202f4313d5d", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 9, + "row": 2113 + }, + { + "path": "inst/Rmd/eset_QC.Rmd", + "sha256": "9b50fea87171cc6731a3005451c98c007e164f4796a59250d4a054766e3808c5", + "language": "R", + "lines": 173, + "truncated": false, + "block": 9, + "row": 13390 + }, + { + "path": "inst/Rmd/net_QC.Rmd", + "sha256": "195a8f51e875c1bf8d0d0a50ee9a2c9e7cdd1938ada3664dc76cae2ed70d2d60", + "language": "R", + "lines": 199, + "truncated": false, + "block": 9, + "row": 13581 + }, + { + "path": "push_docker_image.sh", + "sha256": "71fc2d6f1514215fcf34df5b3ed20c51aa838b41452a09db8b9b986a02b89c35", + "language": "Shell", + "lines": 1, + "truncated": false, + "block": 9, + "row": 13890 + } + ] +} \ No newline at end of file diff --git a/manifests/54/zenodo__19519394.json b/manifests/54/zenodo__19519394.json new file mode 100644 index 0000000000000000000000000000000000000000..1dd1c8faf8f76687fb0e9b90f2251cdc83e7bad1 --- /dev/null +++ b/manifests/54/zenodo__19519394.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19519394", + "url": "10.5281/zenodo.19519394", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Cnn classification pipeline.py", + "sha256": "64d5dea08bfb98d0dda8673dd49f96033cdb1829c5a0096e8abd481ac141065b", + "language": "Python", + "lines": 965, + "truncated": false, + "block": 9, + "row": 12431 + }, + { + "path": "Feature to image conversion.py", + "sha256": "9e6c201640d6b95452bcf3fd6e811c920c52b523f40a59c3be2728da6512cdf6", + "language": "Python", + "lines": 422, + "truncated": false, + "block": 9, + "row": 11857 + } + ] +} \ No newline at end of file diff --git a/manifests/54/zenodo__19661364.json b/manifests/54/zenodo__19661364.json new file mode 100644 index 0000000000000000000000000000000000000000..d417fc1a8c8883955fa344aad5d31e094dd331e1 --- /dev/null +++ b/manifests/54/zenodo__19661364.json @@ -0,0 +1,210 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19661364", + "url": "10.5281/ZENODO.19661364", + "host": "zenodo.org", + "commit": "", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "01_CODE/main.py", + "sha256": "ba9aceac89200a73897ec03cf84eee65b400e4807841fdd729850762591e18f6", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 9, + "row": 9989 + }, + { + "path": "01_CODE/setup.py", + "sha256": "f24b52e9e6c6ef942df3ca492114d60b7e52e69c8aaaceb0e15212d4699dbe8e", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6322 + }, + { + "path": "01_CODE/src/hrpqct_database/dataclasses_hrpqct.py", + "sha256": "aa87fa88381032fdb1917418a11531bb871ac368408309b8bb08a8a192d50d9d", + "language": "Python", + "lines": 624, + "truncated": false, + "block": 9, + "row": 12181 + }, + { + "path": "01_CODE/src/hrpqct_database/db_converter.py", + "sha256": "2c8382b7efb8895a13de2d4e09821de099ebb868395627cf6aebde2239c29e7b", + "language": "Python", + "lines": 1555, + "truncated": false, + "block": 9, + "row": 12590 + }, + { + "path": "01_CODE/src/hrpqct_database/export_combined_database.py", + "sha256": "9cc731ce600cc60adf2d1e98d9b3c31a1a3d32c3d0baba4ce9ecc3fe49a1c938", + "language": "Python", + "lines": 240, + "truncated": false, + "block": 9, + "row": 10478 + }, + { + "path": "01_CODE/src/hrpqct_database/gen_pdf.py", + "sha256": "1a0a2631714a76af7a517b3c7e6f86eaf6f9494f10892dad18a9d68b0dcf5a45", + "language": "Python", + "lines": 427, + "truncated": false, + "block": 9, + "row": 11510 + }, + { + "path": "01_CODE/src/hrpqct_database/plotly_template.py", + "sha256": "cdd040f2bb48d0e99a70eb7ff857ce38e1dade436b8dd9fdec9ac26da23fa596", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7482 + }, + { + "path": "01_CODE/src/hrpqct_database/reference_values.py", + "sha256": "44aab45c421894ea0d755e13142a34dc0843e068d6d341cb0fb31f4dc72ba92e", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 9, + "row": 7342 + }, + { + "path": "01_CODE/src/hrpqct_database/statistics_hrpqct.py", + "sha256": "bb7c94f73dd47f418d39786305224ec8ea6220cd3f82ad0dd875fe99bd9e3575", + "language": "Python", + "lines": 2619, + "truncated": false, + "block": 9, + "row": 12627 + }, + { + "path": "01_CODE/src/hrpqct_database/utils/expand_database.py", + "sha256": "25ed0a6e6da4cf47da80f61d4704eb4d3847155a5a20c0b3050e9f42893f2ad4", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9282 + }, + { + "path": "03_EVALUATION/01_demographics/demographics.R", + "sha256": "bfbd7ac200ca71ca832c8145860fd1a80a799ce553a4bc7599a5a1c0b8836fb2", + "language": "R", + "lines": 205, + "truncated": false, + "block": 9, + "row": 13542 + }, + { + "path": "03_EVALUATION/01_demographics/frax.R", + "sha256": "9f74ffb9818dc7ee75bbad63f6da360ecee848616bfd5232e2fc2a7a4bb7eea5", + "language": "R", + "lines": 137, + "truncated": false, + "block": 9, + "row": 13335 + }, + { + "path": "03_EVALUATION/02_extensive-intensive/extensive_intensive.ipynb", + "sha256": "15c5e75135797b5d04f09e66420ceb785240ba845879ceee9f3b8938808a65d2", + "language": "Jupyter", + "lines": 571, + "truncated": false, + "block": 9, + "row": 2620 + }, + { + "path": "03_EVALUATION/03_correlation-matrix/correlation-matrix-database.ipynb", + "sha256": "a9dbe6e7a6765dc9a5b01bb91d2cac3e69e0b279466925ca3f0456d9a9dc19c7", + "language": "Jupyter", + "lines": 671, + "truncated": false, + "block": 9, + "row": 2660 + }, + { + "path": "03_EVALUATION/04_rate-change/descriptive_statistics_paper.ipynb", + "sha256": "3bdcc75ee657403c48f59a9556e37b14a53eb88359fb921d8223c6c9676a511a", + "language": "Jupyter", + "lines": 365, + "truncated": false, + "block": 9, + "row": 2596 + }, + { + "path": "03_EVALUATION/04_rate-change/precision_error/gluer_repro_michi_data.ipynb", + "sha256": "0230dcd52a83349593fe41c4d388551665e111a31e58e671bdbc5c67be7dd389", + "language": "Jupyter", + "lines": 469, + "truncated": false, + "block": 9, + "row": 2629 + }, + { + "path": "03_EVALUATION/04_rate-change/precision_error/gluer_reproducibility.ipynb", + "sha256": "d3f7e88ed796e24f2604976f92f5d3fca05d5494c5563d9db596401e1f0584ab", + "language": "Jupyter", + "lines": 544, + "truncated": false, + "block": 9, + "row": 2643 + }, + { + "path": "03_EVALUATION/05_radar-plots/statistics_age_sex_site.ipynb", + "sha256": "1887d3653bf3430e733e0520cc6c8711e8907ff1dffd0a6d1b82e1f798d8401d", + "language": "Jupyter", + "lines": 209, + "truncated": false, + "block": 9, + "row": 2410 + }, + { + "path": "03_EVALUATION/06_quadratic-fit-parameters-tables/02_Model.R", + "sha256": "866e72e4850131cc863a43caa70a36d9a3cd3fd9a3942a371c9f615d8267a6da", + "language": "R", + "lines": 389, + "truncated": false, + "block": 9, + "row": 13669 + }, + { + "path": "03_EVALUATION/06_quadratic-fit-parameters-tables/quadratic-fit.ipynb", + "sha256": "cfe38c1825debaf3fac88d735ce4f1f25f38241b6a0dd9dc1f0ff7586d3d93c8", + "language": "Jupyter", + "lines": 138, + "truncated": false, + "block": 9, + "row": 2364 + }, + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "9195712ab0493af1fcb09fbe33300c72366eeeb9962d7cbf2659396271c0944d", + "language": "Text", + "lines": 25, + "truncated": false, + "block": 9, + "row": 14576 + } + ] +} \ No newline at end of file diff --git a/manifests/55/github.com__openforcefield__proteinbenchmark.json b/manifests/55/github.com__openforcefield__proteinbenchmark.json new file mode 100644 index 0000000000000000000000000000000000000000..0d67d6daa9a99b902f7f76789c0577455fdc3e4b --- /dev/null +++ b/manifests/55/github.com__openforcefield__proteinbenchmark.json @@ -0,0 +1,264 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/openforcefield/proteinbenchmark", + "url": "https://github.com/openforcefield/proteinbenchmark", + "host": "github.com", + "commit": "5c939a796018ae9f103b59286cbb7a88d3dd9de4", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "f99ab47483c68d21d142983fcdb007b8b42adb4c73b5462bf26d1b43d0de9626", + "language": "License", + "lines": 22, + "truncated": false, + "block": 9, + "row": 2837 + }, + { + "path": "README.md", + "sha256": "7a4302d26052e292f943250dabfbf5d6798d239b83203f73fe29989936a4c2c5", + "language": "Text", + "lines": 149, + "truncated": false, + "block": 9, + "row": 14702 + }, + { + "path": "devtools/legacy-miniconda-setup/before_install.sh", + "sha256": "8a7bc131750346c6bebec21ca8bf45ee47cd271fd3641c3d6052292020aae432", + "language": "Shell", + "lines": 41, + "truncated": false, + "block": 9, + "row": 14198 + }, + { + "path": "devtools/scripts/create_conda_env.py", + "sha256": "b2e2aa552abf3847e9fb185ce3a9972fdca73028237bbb1ec78a73ff6b405dc6", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 8996 + }, + { + "path": "devtools/scripts/generate_idp_conformers.py", + "sha256": "e900dc1ff5d52d7de3dd551c89d8de5b59f0d38107a50a551f1f63616f206963", + "language": "Python", + "lines": 458, + "truncated": false, + "block": 9, + "row": 11455 + }, + { + "path": "docs/conf.py", + "sha256": "d07613699f15201bb1c671d1f1cead5fc8fb3da3db0c69e4b5dc69733b0a98c8", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 9, + "row": 9618 + }, + { + "path": "proteinbenchmark/__init__.py", + "sha256": "11aa4be8ea1ab1e9b873d0254fbdc51d190f1406d6234a91076dd5ff9bc030d1", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 9, + "row": 6512 + }, + { + "path": "proteinbenchmark/_version.py", + "sha256": "64abbb2d2e7d1982586f1ae810bbe75cd7c8c213d1712215d8bc25e618962387", + "language": "Python", + "lines": 556, + "truncated": false, + "block": 9, + "row": 11742 + }, + { + "path": "proteinbenchmark/analysis.py", + "sha256": "8bbc50ea3aeeac989d480dce793984c13af3383b51605f7f069d96ef212608ef", + "language": "Python", + "lines": 2516, + "truncated": false, + "block": 9, + "row": 12636 + }, + { + "path": "proteinbenchmark/analysis_parameters.py", + "sha256": "2c7df2953ed174dd44743632fba13da06af5664b23d2adb30c30dc4c8336a69c", + "language": "Python", + "lines": 932, + "truncated": false, + "block": 9, + "row": 12163 + }, + { + "path": "proteinbenchmark/benchmark_targets.py", + "sha256": "18513aa01267c660a0bc72c094094cbeccb40f918c5b8576675ba40cf026f69f", + "language": "Python", + "lines": 1165, + "truncated": false, + "block": 9, + "row": 12406 + }, + { + "path": "proteinbenchmark/data/observables/aaqaa3/get-aaqaa3-fraction-helix-by-temperature.py", + "sha256": "6187f13051bd9ea7a281a06a33847f6390357ab437bcfe92d04540dbde5c29b1", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8210 + }, + { + "path": "proteinbenchmark/data/observables/aaqaa3/get-aaqaa3-structures.py", + "sha256": "0084ae5b94f59bb887060f56925e03265ed5d248bd3ea36d36ee276038407c03", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 7045 + }, + { + "path": "proteinbenchmark/data/observables/cln025/get-cln025-fraction-folded-by-temperature.py", + "sha256": "0335092b7d0bf6dc8edee8e2a7587cb3f413be48936c04c133ac22a5c1b015e9", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7672 + }, + { + "path": "proteinbenchmark/data/observables/lin-et-al-cyclic-peptides/print_table.py", + "sha256": "1078f36143e28a952e46b8905f9d929ad4e93b6ff734b3f6e4a005b29d218817", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 9, + "row": 11004 + }, + { + "path": "proteinbenchmark/data/pdbs/get-initial-pdbs.py", + "sha256": "55b6defe9a2d3bea47423306445e53453a895035a126376ca83d85c148da3805", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 9, + "row": 9653 + }, + { + "path": "proteinbenchmark/force_fields.py", + "sha256": "0e6f7708659016ad630792cacea259865efd23b511293c2e30eadd4c7da4aab9", + "language": "Python", + "lines": 1396, + "truncated": false, + "block": 9, + "row": 12519 + }, + { + "path": "proteinbenchmark/gmx_simulation.py", + "sha256": "de7792481d63d90ae5b2e46823dec00aa93ca354869958b4e5277fd6b587d8e0", + "language": "Python", + "lines": 275, + "truncated": false, + "block": 9, + "row": 10692 + }, + { + "path": "proteinbenchmark/openmm_simulation.py", + "sha256": "c78fb96fad166eb990e61736970881dbcd416114fe48531a8b8db930c3b1c18d", + "language": "Python", + "lines": 852, + "truncated": false, + "block": 9, + "row": 12324 + }, + { + "path": "proteinbenchmark/protein_system.py", + "sha256": "58009f5d4fddbb082015653e12cbc1340cbdc1614c73ef09728f5e9b7acf9234", + "language": "Python", + "lines": 775, + "truncated": false, + "block": 9, + "row": 12267 + }, + { + "path": "proteinbenchmark/proteinbenchmark.py", + "sha256": "9231ccc8f5c90fd91eda2badbf0b55194f892a8557f002a3f340a41c87838ce7", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 9, + "row": 6715 + }, + { + "path": "proteinbenchmark/simulation_parameters.py", + "sha256": "0a3f5b19d6e6e21ebc7820cae19895a05ae35e3be8324e9117ce8942e3685071", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7423 + }, + { + "path": "proteinbenchmark/system_setup.py", + "sha256": "6a6d220a4b837c95a6651bb00ced5ca608d402c86e044a47368dae96e9bd3e63", + "language": "Python", + "lines": 1074, + "truncated": false, + "block": 9, + "row": 12385 + }, + { + "path": "proteinbenchmark/tests/__init__.py", + "sha256": "9d128f5ac4db074db96c945f5fa64e65ac8155732cdc731d77f25750fa635a70", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6367 + }, + { + "path": "proteinbenchmark/tests/test_proteinbenchmark.py", + "sha256": "7b3072887265f6f0e42c4de89ab2d5772437e4ae2addd7b700d28a95ca8b0798", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6539 + }, + { + "path": "proteinbenchmark/utilities.py", + "sha256": "57d2535d7a62bcf6b933849136fce2aa12024c2e04b84d86042ffba4522fd880", + "language": "Python", + "lines": 369, + "truncated": false, + "block": 9, + "row": 11185 + }, + { + "path": "setup.py", + "sha256": "069a177c814b21091889ddbe916fce61daf4ad568788357c5183a27db64d8ad0", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 8152 + }, + { + "path": "versioneer.py", + "sha256": "053f270c36b27d776c490b932820969ec49c85c9ad90218a338ecc37535f8a33", + "language": "Python", + "lines": 1822, + "truncated": false, + "block": 9, + "row": 12574 + } + ] +} \ No newline at end of file diff --git a/manifests/58/zenodo__18994273.json b/manifests/58/zenodo__18994273.json new file mode 100644 index 0000000000000000000000000000000000000000..28a2c357b0c041d71ac49ede5cbf10fa76c8c5cb --- /dev/null +++ b/manifests/58/zenodo__18994273.json @@ -0,0 +1,84 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18994273", + "url": "10.5281/zenodo.18994273", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "1st_step_FUSION_trian.sh", + "sha256": "cdda9b0551637070d8be7d9a2f9946b8e91b06a71fd76a37dad25caf5a187924", + "language": "Shell", + "lines": 39, + "truncated": false, + "block": 9, + "row": 14116 + }, + { + "path": "1st_step_TIGAR_Train.sh", + "sha256": "2af772e4b7a740b37c1fa89acc08023873aeecd0d0cf6e5322abc09450c8bdd4", + "language": "Shell", + "lines": 70, + "truncated": false, + "block": 9, + "row": 14199 + }, + { + "path": "2nd_step_TWAS_AD.sh", + "sha256": "8c464fc72e648e04ba8c780376c9ee716e1f9af9dfcd81eccb365af27878dc1c", + "language": "Shell", + "lines": 69, + "truncated": false, + "block": 9, + "row": 14192 + }, + { + "path": "3rd_step_ACAT.R", + "sha256": "be4214165a6d780eaed3da328896ce105149a823bbe4a4d072dfc28698b03a50", + "language": "R", + "lines": 34, + "truncated": false, + "block": 9, + "row": 12814 + }, + { + "path": "4th_step_CVR2_analysis.R", + "sha256": "3c0f04e6a9debd9252b61f4ab5c3667c70f6e3aadd2203fe46603cf625cf1ee6", + "language": "R", + "lines": 94, + "truncated": false, + "block": 9, + "row": 13214 + }, + { + "path": "4th_step_ManhattanPlot.R", + "sha256": "f8bf10f98e5aa30d155bfed9d70523a669c1ce0d10f83ce16c26f44c5323bef2", + "language": "R", + "lines": 128, + "truncated": false, + "block": 9, + "row": 13417 + }, + { + "path": "4th_step_QQ_plots.R", + "sha256": "c25d569fad88c2f011b182ccbbc5a1a1b05da40940e8081d8698913ffcc46a4d", + "language": "R", + "lines": 28, + "truncated": false, + "block": 9, + "row": 12813 + }, + { + "path": "5th_step_GIFT_running.R", + "sha256": "770eca11187e79ecd710cd383576de0650d3cc561a54d4aafd2f8ede7a7087f9", + "language": "R", + "lines": 94, + "truncated": false, + "block": 9, + "row": 13167 + } + ] +} \ No newline at end of file diff --git a/manifests/58/zenodo__19069908.json b/manifests/58/zenodo__19069908.json new file mode 100644 index 0000000000000000000000000000000000000000..8a4ae9b943be6863e7d0b2d601c3e9c673116bf1 --- /dev/null +++ b/manifests/58/zenodo__19069908.json @@ -0,0 +1,129 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19069908", + "url": "https://doi.org/10.5281/zenodo.19069908", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "PlotFig1AB.m", + "sha256": "18db6820d3ba811697f71511350351c8d8aa29655a9495757a752a21742f47a7", + "language": "MATLAB", + "lines": 89, + "truncated": false, + "block": 9, + "row": 4691 + }, + { + "path": "PlotFig1C.m", + "sha256": "0301a5589e003ac49fa54841ba85eb878eed4ab5d5c4ae117969775d270764fd", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 4079 + }, + { + "path": "PlotFig2.m", + "sha256": "a77e71222d3ef0f6bece2a3dcb2d023eb9d2e9798eab66665c47f10d105f648b", + "language": "MATLAB", + "lines": 76, + "truncated": false, + "block": 9, + "row": 4217 + }, + { + "path": "PlotFig4AB.m", + "sha256": "e6035652197b5b1e383393f3c25cd4890b302e15ac0f398dabdea505c5057c0e", + "language": "MATLAB", + "lines": 196, + "truncated": false, + "block": 9, + "row": 5292 + }, + { + "path": "PlotFig4C.m", + "sha256": "b1489683469d3db70129af8f743a8d7c69888bf8e3462839ee6e1b1b6017d21a", + "language": "MATLAB", + "lines": 131, + "truncated": false, + "block": 9, + "row": 5038 + }, + { + "path": "PlotFig4D.m", + "sha256": "a3e7de5434ad0b356210c1f35a6a1c095926ce93b1868e452a2a68060934d67f", + "language": "MATLAB", + "lines": 108, + "truncated": false, + "block": 9, + "row": 4705 + }, + { + "path": "PlotFigS1.m", + "sha256": "f7bff1bfe8a8ab65440c65671ed9f95a09dc085b1cda713e1c06277c4e1299af", + "language": "MATLAB", + "lines": 160, + "truncated": false, + "block": 9, + "row": 5153 + }, + { + "path": "PlotFigS2.m", + "sha256": "c4d821db685b0805880b44eb1b06e74c53e91d0411c3dcaefc737f6cf623e735", + "language": "MATLAB", + "lines": 95, + "truncated": false, + "block": 9, + "row": 4674 + }, + { + "path": "clustering_coefficient.m", + "sha256": "6012ffb0b8b96f750de92cfc22d2bdfc99ed93c6f62e90802a9ca2a5617d9be7", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3813 + }, + { + "path": "count_closed_loops.m", + "sha256": "a2bb35adc5ae37b023a50b2d7a98387bd8fe48dc05b551aaadcae5519766c306", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 9, + "row": 3300 + }, + { + "path": "find_freqs.m", + "sha256": "31444004b9ce06d8cff3f023d658b6062f514d51a3b3a2962af8c4e198802b93", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 9, + "row": 4671 + }, + { + "path": "get_random_animal.m", + "sha256": "aa4de558c88732492251d677822aabdc99f6471bfd59043e879683baa3cc36ba", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3880 + }, + { + "path": "plot_freqs.m", + "sha256": "7c0cd3db96859e2f6114b23b51531b9c8dc063365a621e41b1aede189c6de305", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 9, + "row": 4188 + } + ] +} \ No newline at end of file diff --git a/manifests/59/github.com__hangyabalazs__human-stn-delta.json b/manifests/59/github.com__hangyabalazs__human-stn-delta.json new file mode 100644 index 0000000000000000000000000000000000000000..077a9d863c69f2d8a99e4a4911cd141edc74ba2e --- /dev/null +++ b/manifests/59/github.com__hangyabalazs__human-stn-delta.json @@ -0,0 +1,1083 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/hangyabalazs/human-stn-delta", + "url": "https://github.com/hangyabalazs/human-STN-delta", + "host": "github.com", + "commit": "8a7f480cb9c894a7a2f3fafcf90800f641f3dab2", + "license": "CC0-1.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "EEG_LFP_preprocess/EEGep_wav_ds.m", + "sha256": "44fa221b9c91f79153bc8dbf3d08b05fb0920d85d0dd6ba2e2c618a336f7f179", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 4053 + }, + { + "path": "EEG_LFP_preprocess/PD_ssrt_EEG_LFP_prerocess_MAIN.m", + "sha256": "f663275aef0ab2595fd6ea32db1f8cb403ef4579adbbb81be65be448df9c9eb6", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4284 + }, + { + "path": "EEG_LFP_preprocess/behav_events.m", + "sha256": "ae657e1f05c8ae23968497d5535f366fe0b81e88a3c25a3b7e9c3e937251ae56", + "language": "MATLAB", + "lines": 95, + "truncated": false, + "block": 9, + "row": 4759 + }, + { + "path": "EEG_LFP_preprocess/load_intraoplfp.m", + "sha256": "e509f1c0f536faa2a09167f6407b33237f0340d0f999208b9a8ea06e270f928b", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 4018 + }, + { + "path": "EEG_LFP_preprocess/prep_epochs.m", + "sha256": "1030d8ee0fa9030fe3d9151621dcca8c4974b7ac1079bc860c5d398bcb79fed3", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 4170 + }, + { + "path": "EEG_LFP_preprocess/preprocess_PD.m", + "sha256": "aaae7969230936b79967958c46ff8878942536f3ef80186bcbe9b7374c51a330", + "language": "MATLAB", + "lines": 689, + "truncated": false, + "block": 9, + "row": 5845 + }, + { + "path": "EEG_LFP_preprocess/save_evinxx.m", + "sha256": "48f646f5d9f47c6ae2233ef56fdbe5855dda42e082874971937a8dbfaeeaef82", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 9, + "row": 4382 + }, + { + "path": "EEG_LFP_time_freq/ERSP_plot_stat.m", + "sha256": "4e0e6886d19bd7039fab87efb885ff5690472dddb53ae8f5f95ff07f8d31e41d", + "language": "MATLAB", + "lines": 1302, + "truncated": false, + "block": 9, + "row": 5973 + }, + { + "path": "EEG_LFP_time_freq/PD_eeg_stats.m", + "sha256": "34d176fa77b7fd18557f79963ea384629eaeccd578e8f6f050cccf74c911e450", + "language": "MATLAB", + "lines": 1555, + "truncated": false, + "block": 9, + "row": 5981 + }, + { + "path": "EEG_LFP_time_freq/PD_ssrt_EEG_LFP_time_freq_MAIN.m", + "sha256": "80fc84d06255892b1674bf185e56ad987c16fae95ed7d6ef6f29c41cacc53782", + "language": "MATLAB", + "lines": 190, + "truncated": false, + "block": 9, + "row": 5327 + }, + { + "path": "EEG_LFP_time_freq/PD_wav.m", + "sha256": "cbd9e973158467b1911280b302c412acac60c6b41729c2ea6d32355c9d3da9c3", + "language": "MATLAB", + "lines": 146, + "truncated": false, + "block": 9, + "row": 4967 + }, + { + "path": "EEG_LFP_time_freq/TFpower_map_RT.m", + "sha256": "27036f5d86e5c65982f2e677ed380c2f2ce70d95e4996d74b8626f61fde86497", + "language": "MATLAB", + "lines": 1025, + "truncated": false, + "block": 9, + "row": 5893 + }, + { + "path": "EEG_LFP_time_freq/boostat_eeglab_J.m", + "sha256": "31c0e62734ed91e715ae24086db38e7ac6e27808d2f37ffad1e7825641d55597", + "language": "MATLAB", + "lines": 149, + "truncated": false, + "block": 9, + "row": 4917 + }, + { + "path": "EEG_LFP_time_freq/eegwavelet2.m", + "sha256": "a447c460dcc24d622a8fd3d4b33b31bd03e9149917ca41f5656cc203a391d824", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3756 + }, + { + "path": "EEG_LFP_time_freq/find_dominant_freq_bands.m", + "sha256": "d08e1de39d240c8f668a275cf90396a2e159cbf3b546b6e68b8b8ece1c4964c5", + "language": "MATLAB", + "lines": 153, + "truncated": false, + "block": 9, + "row": 5229 + }, + { + "path": "EEG_LFP_time_freq/load_TFblocks.m", + "sha256": "6fe421a6c42f7de4c5dfde955adb14358ede2f94efd9cd6f3204eead0b5d0ae6", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 4481 + }, + { + "path": "EEG_LFP_time_freq/set_my_topo.m", + "sha256": "68dfe039697abab8b7587b1193ffcbb294024c6ca473dbfb1a857039004ebdba", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3348 + }, + { + "path": "EEG_LFP_time_freq/spectr_fig.m", + "sha256": "171ecc3cf08e5159e355ebe7203e373da413b33300a31b0a872cfcf56db9cb38", + "language": "MATLAB", + "lines": 172, + "truncated": false, + "block": 9, + "row": 5021 + }, + { + "path": "EEG_LFP_time_freq/time_freq_patients.m", + "sha256": "a74500eafe694dc455f0628d3229f487ab5dcb32ebe4e9a12098c5074a1ccc07", + "language": "MATLAB", + "lines": 725, + "truncated": false, + "block": 9, + "row": 5862 + }, + { + "path": "EEG_LFP_time_freq/topoplot_fig.m", + "sha256": "8a85f7fb1f311fdc0a861369c2a68e7a72f3ddf6a966a9acf865915aa7cbd52d", + "language": "MATLAB", + "lines": 97, + "truncated": false, + "block": 9, + "row": 4514 + }, + { + "path": "EEG_LFP_wav_coherence/EEG_LFP_ETA_PD.m", + "sha256": "7a4267c24d3ad34db7c41880462036fa7ba5da9a599e7fb39979feaa75ae0f17", + "language": "MATLAB", + "lines": 496, + "truncated": false, + "block": 9, + "row": 5729 + }, + { + "path": "EEG_LFP_wav_coherence/EEG_LFP_Wcoh_PD.m", + "sha256": "e576a815ef57d18e272f5106245d912eca8083e4d9e3b6fb35db0b24c3acf87f", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 9, + "row": 4409 + }, + { + "path": "EEG_LFP_wav_coherence/EEG_LFP_Wcoh_compare_partitions.m", + "sha256": "6ee3ad157500cbb8507e4e99ddb9e9144c8b0260f12e634344b498376ab9247e", + "language": "MATLAB", + "lines": 346, + "truncated": false, + "block": 9, + "row": 5575 + }, + { + "path": "EEG_LFP_wav_coherence/PD_EEG_LFP_wav_coherence_MAIN.m", + "sha256": "a3b4a269f12f558709165e41751eac22de003aed910fd7ae40f5d3293dda54d7", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3935 + }, + { + "path": "EEG_LFP_wav_coherence/get_patient_wcoh.m", + "sha256": "579e492b48517fcf0ae72d41c598336157c534e1db071683f6b250ecee635d0f", + "language": "MATLAB", + "lines": 135, + "truncated": false, + "block": 9, + "row": 5093 + }, + { + "path": "EEG_LFP_wav_coherence/wcoh_avg.m", + "sha256": "681dbd6d93a2311f71d2ac77c76b54dcdc1e0e8c5869fbc799d35f55ea907d97", + "language": "MATLAB", + "lines": 306, + "truncated": false, + "block": 9, + "row": 5581 + }, + { + "path": "EEG_LFP_wav_coherence/wcoh_fig.m", + "sha256": "0f775528672d9515598d810cd7586351af6e7ab6dd922e09db6525be6d780ddc", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 3749 + }, + { + "path": "EEG_LFP_wav_coherence/wcoh_map_RT.m", + "sha256": "854ff715c09ce3c57a30641d5e0fe08b6b5eff64128cb542c150340b7ec99095", + "language": "MATLAB", + "lines": 294, + "truncated": false, + "block": 9, + "row": 5474 + }, + { + "path": "EEG_LFP_wav_coherence/wcoh_onebyone.m", + "sha256": "69e42f40f3adffd83f1e98b1cd74b06b1e388729627dcb304fee609d19ddec02", + "language": "MATLAB", + "lines": 196, + "truncated": false, + "block": 9, + "row": 5387 + }, + { + "path": "LICENSE", + "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499", + "language": "License", + "lines": 121, + "truncated": false, + "block": 1, + "row": 2210 + }, + { + "path": "PD_SSRT_MAIN.m", + "sha256": "3f40e8af271997a9d4e927502d28432476aed02d7b86cb37a4700179cf039443", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 4438 + }, + { + "path": "README.md", + "sha256": "11b37afb80e4b068d029c0251cbc25543eacbd51f792b40d17a6e78a4546be32", + "language": "Text", + "lines": 74, + "truncated": false, + "block": 9, + "row": 14599 + }, + { + "path": "behavioral_analysis/PD_nosyncTE.m", + "sha256": "411c194ea4525076266e54dfa7830cbd8f532f094ad65a3f02daa8a311b66a42", + "language": "MATLAB", + "lines": 177, + "truncated": false, + "block": 9, + "row": 5256 + }, + { + "path": "behavioral_analysis/PD_ssrt_behav_MAIN.m", + "sha256": "ad5dfbba6103e9b015bbd698d9fa4507feac4f4fcaf7b94e4f4c67d8e97438d7", + "language": "MATLAB", + "lines": 138, + "truncated": false, + "block": 9, + "row": 4962 + }, + { + "path": "behavioral_analysis/RT_allgroupin.m", + "sha256": "531949e062a942d4e8ed8609bca73db7b7a431b5b286aad09fa58b5d50e1c6b1", + "language": "MATLAB", + "lines": 94, + "truncated": false, + "block": 9, + "row": 4685 + }, + { + "path": "behavioral_analysis/RT_comp_cuepair_trialtypes.m", + "sha256": "89549559849c3779222e62a55eabcfc50732a66143c8bd455d98e3e54a642075", + "language": "MATLAB", + "lines": 176, + "truncated": false, + "block": 9, + "row": 5115 + }, + { + "path": "behavioral_analysis/RT_perf_compare.m", + "sha256": "20f3db2389b80be0a96837aabeeb055cd6a1af93dd300181557a3c9ddb8f6896", + "language": "MATLAB", + "lines": 1086, + "truncated": false, + "block": 9, + "row": 5919 + }, + { + "path": "behavioral_analysis/SSDp05_compare.m", + "sha256": "910899404a42b3f4ce96a1d119e860244afb60b852a39989e146cabc91330c90", + "language": "MATLAB", + "lines": 386, + "truncated": false, + "block": 9, + "row": 5619 + }, + { + "path": "behavioral_analysis/SSRTime_PD.m", + "sha256": "85fad4f2b90718028300c327aee2b1f0556b867df1ee27de664b871aeabfdd3c", + "language": "MATLAB", + "lines": 189, + "truncated": false, + "block": 9, + "row": 5177 + }, + { + "path": "behavioral_analysis/calc_RT.m", + "sha256": "b3de336de12f69e3bcfbb6dc3eff2c2048f3293a7dcd440b195ddd4f3bc2290b", + "language": "MATLAB", + "lines": 159, + "truncated": false, + "block": 9, + "row": 5144 + }, + { + "path": "behavioral_analysis/calculate_trialnrs.m", + "sha256": "6c7760679a5d698ea6f9468d10295151c474f8e2be6a65da21b1baf46591c00f", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3852 + }, + { + "path": "behavioral_analysis/get_SSDs_RTs.m", + "sha256": "f30cdb7ee6c7ceb3cfbf01d9eeee236ae05a99e34ed7e8e634b67acb0ac535b5", + "language": "MATLAB", + "lines": 90, + "truncated": false, + "block": 9, + "row": 4474 + }, + { + "path": "behavioral_analysis/preop_postop_RT.m", + "sha256": "8112c706eb2c0efdaf2d87b7c39bc6ad103a2f4bf8f15c9db3cf0d22036476d2", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 9, + "row": 4738 + }, + { + "path": "behavioral_analysis/updrs_behav_corr.m", + "sha256": "ed82260079a28355bebec91c3fa0364f301566b94156cd3eccfc6b5904558b2c", + "language": "MATLAB", + "lines": 272, + "truncated": false, + "block": 9, + "row": 5418 + }, + { + "path": "other/StimOn_stoppart_evinx.m", + "sha256": "6fd73065c8fc91de430b62d62d9fe88c17bafc49767dad1bf017da81c66a6966", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3618 + }, + { + "path": "other/bootstatFDR_clustercorr.m", + "sha256": "51ea0a9ca6e5a56d44eb4fc0b4b319e44e18aa8c953e3817170a596e001a3e96", + "language": "MATLAB", + "lines": 103, + "truncated": false, + "block": 9, + "row": 4733 + }, + { + "path": "other/boxplot_astx.m", + "sha256": "5530c491b41982c81fd42923a87cbe2a3ab97426e4f40f149ccdc6b6dac421ee", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3561 + }, + { + "path": "other/clinical_groups.m", + "sha256": "ef4e6df007f5d187929edce8fb9632f5a56cd60a7e1ec360ebb689f1ff4c9c98", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 9, + "row": 4411 + }, + { + "path": "other/corrmapfig.m", + "sha256": "c6903bdc4d0f07eb9ee98794e5647701ba560b6ad7c384d119ecd1507a31476d", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 9, + "row": 4450 + }, + { + "path": "other/cuepair_trialtypes.m", + "sha256": "e6ad95d70fa4b333213227f550b0ccd70fc45d20293cb0c114c594c46d106f2e", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 9, + "row": 4114 + }, + { + "path": "other/cuepair_trialtypes_2Evinx.m", + "sha256": "27d8a0c410164bbfdd8f4c9bea15fae3e28e544d2f416862de52271fe99b9d6c", + "language": "MATLAB", + "lines": 98, + "truncated": false, + "block": 9, + "row": 4676 + }, + { + "path": "other/datpointsplot.m", + "sha256": "1aaefcf137f5bf6a1f1e0e2d07c35bd564480e5b73cb39b0e05bf5b063088f42", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3677 + }, + { + "path": "other/draw_signifpatch.m", + "sha256": "7353bc6d061d5026af9a859f8aed886364307bfa41fadfea181bcff7c30ba3af", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3624 + }, + { + "path": "other/find_evinx.m", + "sha256": "e17207a913cf9a27ad00b19ed94d0da7d8fdfa7309c8a5c1c5846af3f7b0aa38", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3857 + }, + { + "path": "other/generate_clus_distr_TF.m", + "sha256": "f23e0f4c303d6fc65147f4ead05d6ed4d3d7bf9b1858ea844d28e5c241fe290a", + "language": "MATLAB", + "lines": 347, + "truncated": false, + "block": 9, + "row": 5608 + }, + { + "path": "other/getdata2analyse.m", + "sha256": "992557ff63c61b2e7d60ea64f7a973bc9a0b9edd999851bcab583450ca873fd5", + "language": "MATLAB", + "lines": 327, + "truncated": false, + "block": 9, + "row": 5530 + }, + { + "path": "other/mychisquare.m", + "sha256": "907267537ca15b96d7e503b211f4bbd8e8321f27181ba903ee1bd16e5ef0b829", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 9, + "row": 3101 + }, + { + "path": "other/new_Evinxx_parts.m", + "sha256": "bcbec87dbe17cd438bda86c5e93efeac15349f72f153fdb0b2a0f3535144f97c", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3791 + }, + { + "path": "other/patient_groups_compare.m", + "sha256": "0fadba6c399e0d09e5d6d18d28fe75601deb7533b7e5106636588a0d45e735c0", + "language": "MATLAB", + "lines": 779, + "truncated": false, + "block": 9, + "row": 5836 + }, + { + "path": "other/polypredcicall_mod.m", + "sha256": "0a4398d50efb9ad15e71e8247f49d562ebfaeb34067d8b5a4fc54268dca09af1", + "language": "MATLAB", + "lines": 103, + "truncated": false, + "block": 9, + "row": 4635 + }, + { + "path": "other/set_my_boxplot.m", + "sha256": "42405e37f3328e96089ec2d6fdb986fb002b8c0dffb38bec69988e89e74c20ea", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3554 + }, + { + "path": "other/stacked_bar_perc.m", + "sha256": "5d6368b3b856990edf04de65eaa1ebf97c2bfab778f5dbb9414d5c6d03832825", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3815 + }, + { + "path": "task_code/ArCOMObject_Frame2TTL.m", + "sha256": "4195d09c9473419a89ff11fb3fea1c0cb500352dfa989c281147a51ada94c2c5", + "language": "MATLAB", + "lines": 325, + "truncated": false, + "block": 9, + "row": 5705 + }, + { + "path": "task_code/Frame2TTL.m", + "sha256": "60325642f936aae3ca767d78408512f86a09a85142db6fb93fcb886ffa3a6641", + "language": "MATLAB", + "lines": 138, + "truncated": false, + "block": 9, + "row": 5344 + }, + { + "path": "task_code/Task_SSRT.m", + "sha256": "c75a16543bf2073c299144856ff1767fcc55b797fdc54ff6f06e5f202966767c", + "language": "MATLAB", + "lines": 360, + "truncated": false, + "block": 9, + "row": 5684 + }, + { + "path": "task_code/default_cycle.m", + "sha256": "21f6c4f511560ea2307dc1b6a47e813100bed32c09a75c267807a25d1a0701bd", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 4471 + }, + { + "path": "task_code/delser.m", + "sha256": "07d0cc09b2047e7aaa893e0b72f6e7fe44434b6aa10c70e9a40724caaa6c3817", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 9, + "row": 2980 + }, + { + "path": "task_code/fgetl_nonblocking.m", + "sha256": "1ce1591e5c02f043f5450eab950be5a4377cffaa3befabf0c31739656c404bba", + "language": "MATLAB", + "lines": 174, + "truncated": false, + "block": 9, + "row": 5193 + }, + { + "path": "task_code/flipSens.m", + "sha256": "8fb4214f2c974dfb81a3a1ec797886ba0c1a5a66129591071faccd6ecbf58c9b", + "language": "MATLAB", + "lines": 160, + "truncated": false, + "block": 9, + "row": 5205 + }, + { + "path": "task_code/ser_read.m", + "sha256": "5aed51b43a8aa9a3d86d5d96d660807522b9b8a3eacaffcd046a71e52e172d6c", + "language": "MATLAB", + "lines": 86, + "truncated": false, + "block": 9, + "row": 4515 + }, + { + "path": "task_code/stop_signal.m", + "sha256": "4da1ef75c9deedd32d403211ce40bfa2eb375ad888c8c1f93976ab6cfbd57e9f", + "language": "MATLAB", + "lines": 189, + "truncated": false, + "block": 9, + "row": 5457 + }, + { + "path": "unit_LFP_coupling/PC_RT_correlation.m", + "sha256": "c61d1ad86348972b6c3c70da43b3eba46c973f9188de0419b72ea60fa92a7f84", + "language": "MATLAB", + "lines": 287, + "truncated": false, + "block": 9, + "row": 5489 + }, + { + "path": "unit_LFP_coupling/PC_bursting.m", + "sha256": "708671b801e2f1be3af5546c5dad89eda5eff745e41bb65cd5a02979c57236dd", + "language": "MATLAB", + "lines": 626, + "truncated": false, + "block": 9, + "row": 5768 + }, + { + "path": "unit_LFP_coupling/PC_cell_level.m", + "sha256": "960e7fa07b61416659138c8706e8398dd9fb104706a816a79b1e5e3fd52f60f4", + "language": "MATLAB", + "lines": 298, + "truncated": false, + "block": 9, + "row": 5591 + }, + { + "path": "unit_LFP_coupling/PC_cells_PSTH.m", + "sha256": "285662d77e35104bad0e810c0e8f33b5876e83096f4cbd602e261ba9a210fe68", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4406 + }, + { + "path": "unit_LFP_coupling/PC_figstat3.m", + "sha256": "0491a5e250da7d60dcffa902305ba923e15de9cd3dc14e9fe43281d38e3c6ebe", + "language": "MATLAB", + "lines": 187, + "truncated": false, + "block": 9, + "row": 5238 + }, + { + "path": "unit_LFP_coupling/PC_group_subevs.m", + "sha256": "67995921ca72d1f389729be32b0e9c4f8683469ea4003b182d12f41a405a04c6", + "language": "MATLAB", + "lines": 319, + "truncated": false, + "block": 9, + "row": 5611 + }, + { + "path": "unit_LFP_coupling/PC_groups_f.m", + "sha256": "bcb421bcfab8979aa8f8dd36fcfa7d8d5bac991b6604e45d26418add5df1801e", + "language": "MATLAB", + "lines": 397, + "truncated": false, + "block": 9, + "row": 5724 + }, + { + "path": "unit_LFP_coupling/PC_pie.m", + "sha256": "f7914fa2ce5cf02387d5b32097785fff2f84136351914d6caa23e2837d7d2785", + "language": "MATLAB", + "lines": 235, + "truncated": false, + "block": 9, + "row": 5475 + }, + { + "path": "unit_LFP_coupling/PC_polar.m", + "sha256": "18aca9639973a71cb31c6381f18b570a3b3203925e11ae504675e6dd5a7832e4", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 9, + "row": 4486 + }, + { + "path": "unit_LFP_coupling/PC_respcells_stacked_compare.m", + "sha256": "0d79ce78a4775c069a0bf4fc6135a8fc2858f2c86a01fe0502acda90a6f0df8f", + "language": "MATLAB", + "lines": 218, + "truncated": false, + "block": 9, + "row": 5366 + }, + { + "path": "unit_LFP_coupling/b_rao3_mod.m", + "sha256": "fe5ae7589cf5b4b79a60b07486dc97eeaeb229fe47a3b8310ab7a81379270065", + "language": "MATLAB", + "lines": 152, + "truncated": false, + "block": 9, + "row": 4909 + }, + { + "path": "unit_LFP_coupling/component_PC_RT_correlation.m", + "sha256": "0e24fbb863c9914326c6e0dc88821ed70040274c1081fc8fc26b50ec22f40fcc", + "language": "MATLAB", + "lines": 97, + "truncated": false, + "block": 9, + "row": 4535 + }, + { + "path": "unit_LFP_coupling/get_phas.m", + "sha256": "c13f4511bfb4c7d22c87f27e4cf0c75bd5a455d376b1d1a6f347a49556c10971", + "language": "MATLAB", + "lines": 131, + "truncated": false, + "block": 9, + "row": 4930 + }, + { + "path": "unit_LFP_coupling/phase_hist_sinewave_plot.m", + "sha256": "ca2672e8d9ecb65515912461d8df6de84d2ba9a08322f09c6219f28d28c0330b", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 9, + "row": 4195 + }, + { + "path": "unit_LFP_coupling/spik_phas_extraction.m", + "sha256": "ab857a2c897379e3d44d076ee967e274d1517608d8c669139c9d64f3eba56230", + "language": "MATLAB", + "lines": 391, + "truncated": false, + "block": 9, + "row": 5679 + }, + { + "path": "unit_LFP_coupling/spike_phase_coupling_MAIN.m", + "sha256": "0daf7420548990354e7fdc24b20ef68acd97805a0053c5a7c8b798a771b7a64f", + "language": "MATLAB", + "lines": 180, + "truncated": false, + "block": 9, + "row": 5286 + }, + { + "path": "unit_LFP_coupling/spike_triggered_average_PD.m", + "sha256": "6a8d5fbca09db2f7bae011d316c8bbd458e4a58dd6aac5a259986bb26a240cde", + "language": "MATLAB", + "lines": 252, + "truncated": false, + "block": 9, + "row": 5438 + }, + { + "path": "unit_analysis/EvsI_avg_psth.m", + "sha256": "21df89a6461eeefa98369f287deb1c7622ad865fbfa604bcc89092825a10233e", + "language": "MATLAB", + "lines": 342, + "truncated": false, + "block": 9, + "row": 5526 + }, + { + "path": "unit_analysis/LRatio_pd_ssrt.m", + "sha256": "4ebe18a730d1027ec664d615355516e85d32e64e0f02d716b9413a105e4c3f55", + "language": "MATLAB", + "lines": 118, + "truncated": false, + "block": 9, + "row": 4901 + }, + { + "path": "unit_analysis/L_ratio_ID_distrib.m", + "sha256": "e941e691464d5ceb1b2605185aaa7d39fb0b16411b7f0deb716d111668a119fc", + "language": "MATLAB", + "lines": 207, + "truncated": false, + "block": 9, + "row": 5207 + }, + { + "path": "unit_analysis/PD_ssrt_unit_MAIN.m", + "sha256": "a01e52cb94faf977ed55099cf1f172d5872e7a78d7b6f3c2ff03e23f44861972", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 9, + "row": 4248 + }, + { + "path": "unit_analysis/acg_mod.m", + "sha256": "bcc3b9e4e53467570697057530b4007abaa124fc94b45ec82eeffe29e0c04863", + "language": "MATLAB", + "lines": 279, + "truncated": false, + "block": 9, + "row": 5578 + }, + { + "path": "unit_analysis/all_resppred_map.m", + "sha256": "6b3d0bd8849c60db29d08fa3efae46e960ae631f31957d102c2771b49a598f2f", + "language": "MATLAB", + "lines": 207, + "truncated": false, + "block": 9, + "row": 5226 + }, + { + "path": "unit_analysis/autocorr_PD.m", + "sha256": "783e65f390172522afb120f448e98b0b9cda27f9b57bd1cd2e3253a4860c5a20", + "language": "MATLAB", + "lines": 69, + "truncated": false, + "block": 9, + "row": 4344 + }, + { + "path": "unit_analysis/avg_psth_plot.m", + "sha256": "ef4af6457d4465ec41b0ebcaf2988ff33562c3c838ca34b6651e30875e5094dc", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4531 + }, + { + "path": "unit_analysis/avg_psth_stat.m", + "sha256": "da48b6c9b9aff680a569ae200506618beac7228c38716059a4ed52c17f8d6888", + "language": "MATLAB", + "lines": 176, + "truncated": false, + "block": 9, + "row": 5119 + }, + { + "path": "unit_analysis/cellnr_pie.m", + "sha256": "ca95e06c79eab64f42dc93beea5779dc414477406c9ffd2b381887ac64d3b65f", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3594 + }, + { + "path": "unit_analysis/check_resp_pvalues.m", + "sha256": "ed0adc923e432cf236c92c425565d84f3bba6b46b6b00498a6e9e75692429758", + "language": "MATLAB", + "lines": 114, + "truncated": false, + "block": 9, + "row": 4548 + }, + { + "path": "unit_analysis/compare_partitions_resppred.m", + "sha256": "a8f323f47385f041b03828eeeffc7e5574ba0e8c30502cba5881297172d987b6", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3914 + }, + { + "path": "unit_analysis/defineLabelsColors_pd.m", + "sha256": "979ee0b44e1e592d6f4ca659089b4ed159173481fb52850decf7267584c5784e", + "language": "MATLAB", + "lines": 76, + "truncated": false, + "block": 9, + "row": 5328 + }, + { + "path": "unit_analysis/find_cellidx.m", + "sha256": "12b4d35d839f6b825b8d6ec180171c212b1fb6f6aa2308536a6ffde8d8ee4ba9", + "language": "MATLAB", + "lines": 138, + "truncated": false, + "block": 9, + "row": 4895 + }, + { + "path": "unit_analysis/get_prop.m", + "sha256": "6bde51e1d053880616ffd8e638916a87f28e7ca49abae7233a52c085029d13a3", + "language": "MATLAB", + "lines": 652, + "truncated": false, + "block": 9, + "row": 5840 + }, + { + "path": "unit_analysis/mediansplitBI_PSTHs.m", + "sha256": "9840d28df0a8dc9c29afffc725957c09194f36c9c9ccb6ba91d3072b80e7e69b", + "language": "MATLAB", + "lines": 348, + "truncated": false, + "block": 9, + "row": 5651 + }, + { + "path": "unit_analysis/norm_psth_map1.m", + "sha256": "b8f9553b08461993b21a83e2e8501b721a06eb9791bf6aeb13ed1586b67ae1e1", + "language": "MATLAB", + "lines": 266, + "truncated": false, + "block": 9, + "row": 5482 + }, + { + "path": "unit_analysis/partitions_avg_psth.m", + "sha256": "6bdabbb49bad2794abbe91c515ee263dc43b18e787635f6a0fbc8fa2a687099c", + "language": "MATLAB", + "lines": 302, + "truncated": false, + "block": 9, + "row": 5524 + }, + { + "path": "unit_analysis/responsesorter_PD.m", + "sha256": "1c6efee862327ee4e1948b03cf92a6726f8032d0eb4e67e933c5797dc3651432", + "language": "MATLAB", + "lines": 258, + "truncated": false, + "block": 9, + "row": 5506 + }, + { + "path": "unit_analysis/respsort_partitions_PD.m", + "sha256": "f08ed9b8c5481c4407b8cc7166de67fd1b93ba4be764f97d0d446376168daf83", + "language": "MATLAB", + "lines": 238, + "truncated": false, + "block": 9, + "row": 5423 + }, + { + "path": "unit_analysis/set_meanFR.m", + "sha256": "d809fde32ab6a3a7e21a5f313c9b2a10973bcd52b5e8bf3bdd1d2282783b8948", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3669 + }, + { + "path": "unit_analysis/unit_bursting.m", + "sha256": "4f8f86e5a9d1107b85a5e0ae8b4a5f7e1f4358ad973a5897a40c4f513ff09644", + "language": "MATLAB", + "lines": 344, + "truncated": false, + "block": 9, + "row": 5499 + }, + { + "path": "unit_analysis/unit_sorter.m", + "sha256": "cd37379b93bfc8affb09d9bc67678e7d923abeb85180ea979fffcf6df8812efd", + "language": "MATLAB", + "lines": 114, + "truncated": false, + "block": 9, + "row": 4677 + }, + { + "path": "unit_analysis/unit_subregions.m", + "sha256": "60168e2321f1998c84715d154e6ea5b8d63122c3ad537eab23265e10a24124b2", + "language": "MATLAB", + "lines": 923, + "truncated": false, + "block": 9, + "row": 5879 + }, + { + "path": "unit_analysis/updrs_bursting_corr.m", + "sha256": "2b7fa1c1d3d042b42b3e076768416228d284900cbb35a9ebd98f76346cf26893", + "language": "MATLAB", + "lines": 104, + "truncated": false, + "block": 9, + "row": 4624 + }, + { + "path": "unit_preprocess/create_EventSpikes_mat.m", + "sha256": "7d13228487cf35af8ea4ac2f29656798818d1b321c44f82ee5a6a3dae1bef988", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 4007 + }, + { + "path": "unit_preprocess/defineEventsEpochs_pdtask.m", + "sha256": "19633aa6c58aca289f6cfd20dc8aaedaf5afb630fd1ee938039587700cdfef7c", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 9, + "row": 4327 + }, + { + "path": "unit_preprocess/inodisc.m", + "sha256": "3c67b84cb1db20318a2f9753fa970e67d90fc4165d6507b4fe69b2dcfca3615b", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 9, + "row": 4645 + }, + { + "path": "unit_preprocess/openephys_SaveMClustFeatures.m", + "sha256": "7ccf7f8c32988a517fd13a4aa552d27930194694dad5a6ea55d67e1e92e317f2", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4397 + }, + { + "path": "unit_preprocess/read_inomed.m", + "sha256": "d46194c92e9ed92af45faa2281c81281114f31f6f88207b621d5f026e7d8a8ee", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 9, + "row": 4588 + }, + { + "path": "unit_preprocess/saveDATasMER.m", + "sha256": "30a4a245f977e1ebc1c36c340842120d8606ae8a46235509c66b4b8d8f6c20f9", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 9, + "row": 4322 + } + ] +} \ No newline at end of file diff --git a/manifests/5a/github.com__openfreeenergy__cinnabar.json b/manifests/5a/github.com__openfreeenergy__cinnabar.json new file mode 100644 index 0000000000000000000000000000000000000000..8dfd703c1af0a2c059a5a53bf6de729c7211bebc --- /dev/null +++ b/manifests/5a/github.com__openfreeenergy__cinnabar.json @@ -0,0 +1,390 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/openfreeenergy/cinnabar", + "url": "https://github.com/OpenFreeEnergy/cinnabar/tree/0.5.0", + "host": "github.com", + "commit": "58732555c1f659fe7e7bc584e0c9da79d4777df3", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "0dbfc42c29bbbd6d2664cbb22e9aa9dff3d96056f91681051129101bc53dda96", + "language": "License", + "lines": 22, + "truncated": false, + "block": 9, + "row": 2840 + }, + { + "path": "README.md", + "sha256": "e00a629f44ee99c82c61777a5a388300f545c5f8f4b83864cfae46476db57b38", + "language": "Text", + "lines": 38, + "truncated": false, + "block": 9, + "row": 14523 + }, + { + "path": "cinnabar/__init__.py", + "sha256": "e2c6f6bb365dc45ab96c4c9e6225ab20cfb18493bbecb082cd599e0eb385d803", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6599 + }, + { + "path": "cinnabar/_due.py", + "sha256": "b178388f8cdc2fcb20d475f80ac97a9848b524d4772513da13da48b14601c030", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8021 + }, + { + "path": "cinnabar/classification_metrics.py", + "sha256": "f7ca3408bfce3547cb2dbf4c3a99cac1c3e11e684ed3fff64c1ce64064788724", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 8990 + }, + { + "path": "cinnabar/cli.py", + "sha256": "6d98e1392bbd5cc4430f9cc82e616820f1a1dcdc0bea0391a00e182a66ce4b7b", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7905 + }, + { + "path": "cinnabar/compare.py", + "sha256": "8a095bc606818a2b42f7845fc8f86d7538afd4d8c31df3b19710b3d60c075eb7", + "language": "Python", + "lines": 319, + "truncated": false, + "block": 9, + "row": 11325 + }, + { + "path": "cinnabar/conversion.py", + "sha256": "63c710cc2e61864de75aa74232e7ed058d8fd06902325cb7cc7ff74ccba512d4", + "language": "Python", + "lines": 264, + "truncated": false, + "block": 9, + "row": 10878 + }, + { + "path": "cinnabar/estimators.py", + "sha256": "5d5cb94d1891a90c7600cf1cf57fdbd810305558c28c5784ec379ee17604041a", + "language": "Python", + "lines": 439, + "truncated": false, + "block": 9, + "row": 11627 + }, + { + "path": "cinnabar/femap.py", + "sha256": "3ad328f32b686f9f2d1bd7038573077277fb42a7f9de8c39ce32ba777a60c591", + "language": "Python", + "lines": 1105, + "truncated": false, + "block": 9, + "row": 12440 + }, + { + "path": "cinnabar/measurements.py", + "sha256": "3459558bdeb927920340ab1a17f90e97117c7a040e4a8d4a331d55746c93af6d", + "language": "Python", + "lines": 207, + "truncated": false, + "block": 9, + "row": 10555 + }, + { + "path": "cinnabar/plotlying.py", + "sha256": "e543d8a37c36bbe6901b8ce0dc9206fb7cbde871a6845f98dc90b5d9bb653edf", + "language": "Python", + "lines": 320, + "truncated": false, + "block": 9, + "row": 10698 + }, + { + "path": "cinnabar/plotting.py", + "sha256": "f74e4bafd5e7d24f46607eb8a91164cd468f9de94bee07e33f9628f56c3a0449", + "language": "Python", + "lines": 1329, + "truncated": false, + "block": 9, + "row": 12501 + }, + { + "path": "cinnabar/stats.py", + "sha256": "0b8d2631fec765971474aab4855cf017e4a752547eecfd2ba3c6aaeb4737bf61", + "language": "Python", + "lines": 367, + "truncated": false, + "block": 9, + "row": 11061 + }, + { + "path": "cinnabar/tests/__init__.py", + "sha256": "b6522578b5ffef3245c10bb09ea3fd7c9d27417743d6e03e97cb97f30e0a50a3", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6366 + }, + { + "path": "cinnabar/tests/conftest.py", + "sha256": "1db46d902144ea6ddc485294dc8105fdab885e9d4ec546f53482e5e005e54f58", + "language": "Python", + "lines": 548, + "truncated": false, + "block": 9, + "row": 11308 + }, + { + "path": "cinnabar/tests/test_classification_metrics.py", + "sha256": "625fccefd3ee7bee2eaab3299e36d4beda3028c7433334ccb6c29d4bacde863f", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 8811 + }, + { + "path": "cinnabar/tests/test_cli.py", + "sha256": "4fd62c7f332572718c6986a7a92e016976331c41f6a651b1d434e5963f1872a9", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6752 + }, + { + "path": "cinnabar/tests/test_compare.py", + "sha256": "96cd412e301e38c9aa7c88f21cc31ed795239a48005ee2029f84a33e6988fd14", + "language": "Python", + "lines": 194, + "truncated": false, + "block": 9, + "row": 10145 + }, + { + "path": "cinnabar/tests/test_conversion.py", + "sha256": "6657af41d670432cd34f620b28ef6a30acf8f89ea7bc914b737aaa8da2e73c5b", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 9, + "row": 10525 + }, + { + "path": "cinnabar/tests/test_due.py", + "sha256": "f4d4925caae69580d5f3159c7506926f93d540e6e1e2de89f384660138afad95", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 9, + "row": 6624 + }, + { + "path": "cinnabar/tests/test_estimators.py", + "sha256": "ef832763db7d36d3293d12abdf2477c7b0d0c79ad83ae8f7925e20edb7201a44", + "language": "Python", + "lines": 166, + "truncated": false, + "block": 9, + "row": 9799 + }, + { + "path": "cinnabar/tests/test_femap.py", + "sha256": "b406e1269bf17ecfc5b4f3983798cd47844968938675666795c562d6a50ea2e6", + "language": "Python", + "lines": 917, + "truncated": false, + "block": 9, + "row": 12311 + }, + { + "path": "cinnabar/tests/test_import.py", + "sha256": "283683161885debb33fa23a21b24dd6ffe02373317ce651831607a49b5a848c4", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6452 + }, + { + "path": "cinnabar/tests/test_measurements.py", + "sha256": "cde0797910e9c2a4b995eacbda3630c1f3de8168efb649863e293ada9699eda9", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 9, + "row": 9760 + }, + { + "path": "cinnabar/tests/test_plotlying.py", + "sha256": "90e77854e2946bc803fd736cbb4151043f15ac2681f8da6e1ade396032b34d92", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7604 + }, + { + "path": "cinnabar/tests/test_plotting.py", + "sha256": "edcb6ac96cc9ee002976ab51da28b4059ce57a7e70326824c47fa8c7840b39da", + "language": "Python", + "lines": 629, + "truncated": false, + "block": 9, + "row": 12011 + }, + { + "path": "cinnabar/tests/test_stats.py", + "sha256": "6431fc784b3334922cf0deac46925f80973afd2cf52566f0cd12ec76013b311f", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 9, + "row": 9579 + }, + { + "path": "devtools/scripts/create_conda_env.py", + "sha256": "14ea04e65c5c9e85bb71c3a60388dbe7dbe4423b04eb50fd2df715047aa0248d", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 8932 + }, + { + "path": "docs/conf.py", + "sha256": "77e00f0566cf30a59ea9faa9596445c612ee4426d76f92d0f0918f8071bb682c", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 9, + "row": 9795 + }, + { + "path": "docs/tutorials/calculating-metrics.ipynb", + "sha256": "14d03f92c1536abbd70517d64d91da82a36de6b0529bdf4e483d931775f90c81", + "language": "Jupyter", + "lines": 338, + "truncated": false, + "block": 9, + "row": 2623 + }, + { + "path": "docs/tutorials/cinnabar-api.ipynb", + "sha256": "83252a1b0b39f50daba978bcfcdac09eb8dd92719dfe40b6f1d7204da3594d27", + "language": "Jupyter", + "lines": 438, + "truncated": false, + "block": 9, + "row": 2654 + }, + { + "path": "docs/tutorials/custom-estimator.ipynb", + "sha256": "5d004c24be4029e681d4869dcb4460c3c9dd5dea1f1dc213a924821b6005896d", + "language": "Jupyter", + "lines": 209, + "truncated": false, + "block": 9, + "row": 2453 + }, + { + "path": "docs/tutorials/cycle-closure.ipynb", + "sha256": "3a3d5115d33a9983fcb09f188c0f690da4655ba26d0f8d5ac464171e084c3f67", + "language": "Jupyter", + "lines": 207, + "truncated": false, + "block": 9, + "row": 2517 + }, + { + "path": "docs/tutorials/ecdf-plots.ipynb", + "sha256": "aa20221d23ecb555201e82967784d1f59f25b1953e7d2a549d27cccb5d00a1c5", + "language": "Jupyter", + "lines": 258, + "truncated": false, + "block": 9, + "row": 2533 + }, + { + "path": "docs/tutorials/results_comparison.ipynb", + "sha256": "c14c0ba501057ffd61da9ab39ba5309791df11b1597649614f5de22445c9e5c8", + "language": "Jupyter", + "lines": 225, + "truncated": false, + "block": 9, + "row": 2528 + }, + { + "path": "examples/calculating-metrics.ipynb", + "sha256": "14d03f92c1536abbd70517d64d91da82a36de6b0529bdf4e483d931775f90c81", + "language": "Jupyter", + "lines": 338, + "truncated": false, + "block": 9, + "row": 2623 + }, + { + "path": "examples/cinnabar-api.ipynb", + "sha256": "83252a1b0b39f50daba978bcfcdac09eb8dd92719dfe40b6f1d7204da3594d27", + "language": "Jupyter", + "lines": 438, + "truncated": false, + "block": 9, + "row": 2654 + }, + { + "path": "examples/custom-estimator.ipynb", + "sha256": "5d004c24be4029e681d4869dcb4460c3c9dd5dea1f1dc213a924821b6005896d", + "language": "Jupyter", + "lines": 209, + "truncated": false, + "block": 9, + "row": 2453 + }, + { + "path": "examples/cycle-closure.ipynb", + "sha256": "3a3d5115d33a9983fcb09f188c0f690da4655ba26d0f8d5ac464171e084c3f67", + "language": "Jupyter", + "lines": 207, + "truncated": false, + "block": 9, + "row": 2517 + }, + { + "path": "examples/ecdf-plots.ipynb", + "sha256": "aa20221d23ecb555201e82967784d1f59f25b1953e7d2a549d27cccb5d00a1c5", + "language": "Jupyter", + "lines": 258, + "truncated": false, + "block": 9, + "row": 2533 + }, + { + "path": "examples/results_comparison.ipynb", + "sha256": "c14c0ba501057ffd61da9ab39ba5309791df11b1597649614f5de22445c9e5c8", + "language": "Jupyter", + "lines": 225, + "truncated": false, + "block": 9, + "row": 2528 + } + ] +} \ No newline at end of file diff --git a/manifests/5b/github.com__zhanghao-njmu__scp.json b/manifests/5b/github.com__zhanghao-njmu__scp.json new file mode 100644 index 0000000000000000000000000000000000000000..ea62509ef6f41703a3e0ac312430b75d967537f2 --- /dev/null +++ b/manifests/5b/github.com__zhanghao-njmu__scp.json @@ -0,0 +1,210 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/zhanghao-njmu/scp", + "url": "https://github.com/zhanghao-njmu/SCP", + "host": "github.com", + "commit": "b9b0eb7a7bf2c2c4b2262e73e09d7ebd515c7da0", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE.md", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.md", + "sha256": "585e25ef8f5946a52bf2aed68d5becfc38be94a8663aa01c1b31d88aa57f1de3", + "language": "License", + "lines": 595, + "truncated": false, + "block": 2, + "row": 1157 + }, + { + "path": "R/RcppExports.R", + "sha256": "f81aad1266ebd3dca0ee063316d941b3f3959e5c1434ef97ea4bf04d0278f297", + "language": "R", + "lines": 7, + "truncated": false, + "block": 9, + "row": 12755 + }, + { + "path": "R/SCP-analysis.R", + "sha256": "9198bd90a6b0da7c2966349151f53820675a796f3441d189d27545fc1a899023", + "language": "R", + "lines": 4088, + "truncated": true, + "block": 9, + "row": 13869 + }, + { + "path": "R/SCP-app.R", + "sha256": "f399ad506ec2d086fc083533edac19ece6670434159cf24aa9c727cc00ec8159", + "language": "R", + "lines": 2299, + "truncated": false, + "block": 9, + "row": 13864 + }, + { + "path": "R/SCP-cell_annotation.R", + "sha256": "4bdf0a291afec7217e09df016384128a855bdf2ac4ded5e210c091c687124044", + "language": "R", + "lines": 787, + "truncated": false, + "block": 9, + "row": 13840 + }, + { + "path": "R/SCP-cellqc.R", + "sha256": "84e7d0544d09b69993c7b06d0fb211fb4953fdf6d10fbba634a6c354dd24caca", + "language": "R", + "lines": 500, + "truncated": false, + "block": 9, + "row": 13802 + }, + { + "path": "R/SCP-feature_annotation.R", + "sha256": "1e73333ea3dd6870887c62f26bafca69d4aa91650867a4deb40d0a610dd4c723", + "language": "R", + "lines": 121, + "truncated": false, + "block": 9, + "row": 13432 + }, + { + "path": "R/SCP-plot.R", + "sha256": "a7db507500a1a6aae95547d4042eafb170e1019b80f3eb7ce9468ec1265d2dfe", + "language": "R", + "lines": 4237, + "truncated": true, + "block": 9, + "row": 13871 + }, + { + "path": "R/SCP-projection.R", + "sha256": "ed458cd6246e973269239e27d75c09405f1a230c3100c27953bc71f3b3c39d4a", + "language": "R", + "lines": 811, + "truncated": false, + "block": 9, + "row": 13841 + }, + { + "path": "R/SCP-workflow.R", + "sha256": "d1da1bca1a9242c83c4746aec54495acb296011db34324ad3da7a431924db79d", + "language": "R", + "lines": 3959, + "truncated": false, + "block": 9, + "row": 13866 + }, + { + "path": "R/Seurat-function.R", + "sha256": "0cb7ef844827c207276456d5b14fbdc0841853db2b600f8339e05dd20b776464", + "language": "R", + "lines": 1857, + "truncated": false, + "block": 9, + "row": 13863 + }, + { + "path": "R/data.R", + "sha256": "9f683ec5ea305ec151a8c765564c6371c896cafc6a377c18174e41d5012e2767", + "language": "R", + "lines": 294, + "truncated": false, + "block": 9, + "row": 13659 + }, + { + "path": "R/ggsankey.R", + "sha256": "7977b5be775db4b6c475abed69936bde84fbfc3f4f30c3d949f8449d229a710a", + "language": "R", + "lines": 1004, + "truncated": false, + "block": 9, + "row": 13831 + }, + { + "path": "R/reexports.R", + "sha256": "4a3a76880b4d3336626749e1c00d9c5d5b605727a6a2b7027f0edf0f530084d5", + "language": "R", + "lines": 28, + "truncated": false, + "block": 9, + "row": 12777 + }, + { + "path": "R/utils.R", + "sha256": "7ff56559d27a94e3ff28228ea1790c2468a8c3d6fae05381c69ce93de4d10fa4", + "language": "R", + "lines": 942, + "truncated": false, + "block": 9, + "row": 13835 + }, + { + "path": "R/zzz.R", + "sha256": "ed31b1b63e2f854f0b74f7e76bf872fb7e14240e137f8efa31b83caad6b29452", + "language": "R", + "lines": 50, + "truncated": false, + "block": 9, + "row": 13025 + }, + { + "path": "README.Rmd", + "sha256": "e8a0d9cb171c78dcbc7f28555ee2f7ebdb4817d56ab2c36cffd7616c58f3974f", + "language": "R", + "lines": 549, + "truncated": false, + "block": 9, + "row": 13771 + }, + { + "path": "README.md", + "sha256": "71fd9883bb58418a0b971f8d1d780eb2c0c1a9f425f76511e727f0627d352270", + "language": "Text", + "lines": 683, + "truncated": false, + "block": 9, + "row": 14742 + }, + { + "path": "inst/python/SCP_analysis.py", + "sha256": "68def54ee1711381d7b14330715aaee8f9ac8ad8c4f2d72dfef2e9e7b8f3e332", + "language": "Python", + "lines": 898, + "truncated": false, + "block": 9, + "row": 12374 + }, + { + "path": "inst/python/harmonizomeapi.py", + "sha256": "9759c4fac55f2c2aa84f603c448063badcc8718f86bdd208147d082da3c3e73e", + "language": "Python", + "lines": 353, + "truncated": false, + "block": 9, + "row": 11100 + }, + { + "path": "src/RcppExports.cpp", + "sha256": "efc2c94a97b9c3192547a5dfb3eb918dfd1edb3c736ae0b2c3090a291ba73ccd", + "language": "C++", + "lines": 37, + "truncated": false, + "block": 9, + "row": 213 + }, + { + "path": "src/asMatrix.cpp", + "sha256": "d169d5c299e04c0557e5a002064354c3a6f8555da17dbd97dedddb7125ed2c50", + "language": "C++", + "lines": 20, + "truncated": false, + "block": 9, + "row": 165 + } + ] +} \ No newline at end of file diff --git a/manifests/5e/github.com__tsailabsj__circleseq.json b/manifests/5e/github.com__tsailabsj__circleseq.json new file mode 100644 index 0000000000000000000000000000000000000000..2be45a332b9a7fe7d4163eaeedf858453a4032b0 --- /dev/null +++ b/manifests/5e/github.com__tsailabsj__circleseq.json @@ -0,0 +1,237 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/tsailabsj/circleseq", + "url": "https://github.com/tsailabSJ/circleseq", + "host": "github.com", + "commit": "b98287b9f6df5dd3fc61d669ca24f0f37be222dc", + "license": "AGPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "91b65277959ec273763d28ef002e83a6b3fba57c7a35436c9e5b66536333d720", + "language": "License", + "lines": 661, + "truncated": false, + "block": 9, + "row": 2910 + }, + { + "path": "README.MD", + "sha256": "39bb5258a1873d85c66c241fdc089c26fc6267b5175c2f88a435ee85b9d86f06", + "language": "Text", + "lines": 161, + "truncated": false, + "block": 9, + "row": 14710 + }, + { + "path": "circleseq/alignReads.py", + "sha256": "924cfdc58a215d8feab9d401251af4f30d68b33777f6e8fe7b4bd1fcea32d687", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 8348 + }, + { + "path": "circleseq/callVariants.py", + "sha256": "207ca024700fc97c2a47ecd566e99901383714d99869579a95640a656afc5c47", + "language": "Python", + "lines": 298, + "truncated": false, + "block": 9, + "row": 11339 + }, + { + "path": "circleseq/circleseq.py", + "sha256": "fcdec1791b24f8a37cd43413f9d0479435aaa824d8aa517137240b52cc265d07", + "language": "Python", + "lines": 306, + "truncated": false, + "block": 9, + "row": 11429 + }, + { + "path": "circleseq/findCleavageSites.py", + "sha256": "45170511fe623866b8e89de2d4a55cecc702fad3f7cf662eee02fa0ffe734ac0", + "language": "Python", + "lines": 669, + "truncated": false, + "block": 9, + "row": 12367 + }, + { + "path": "circleseq/log.py", + "sha256": "f42f3a67a6698c148b67203a697f6ee6f53e209ef617941f2f4508ff14dc6e82", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6688 + }, + { + "path": "circleseq/mergeReads.py", + "sha256": "61854937da7e2a0be34f323298802a37ca99b0f82de4b0d409e2d5244a6c9467", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 7136 + }, + { + "path": "circleseq/referenceFree.py", + "sha256": "9c7bf99fd4208ca3b19eba1d99090c08763fd387277eb91b6b6eddcf9c22c149", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 8978 + }, + { + "path": "circleseq/utility.py", + "sha256": "77b58ee20a49b2fc7acefb2a2408be6f5d6d0ec5d6f50b2b764640d2ab1adb2d", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6769 + }, + { + "path": "circleseq/validation.py", + "sha256": "0f003bc87221a297691ee0adac7d927a496a36cf2fa1972a26f75329ddefd02e", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 9, + "row": 8846 + }, + { + "path": "circleseq/visualization.py", + "sha256": "e3d452cfd2ccf6078d234c8e02b4cd45a54e838fb84455ebeada6246195a9c67", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 9, + "row": 10556 + }, + { + "path": "scripts/__init__.py", + "sha256": "c738bd2c18dc21fdac4bf3f0f673a9644eba743fa4298c170dc60cdb6f98fbee", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6097 + }, + { + "path": "scripts/site_pvalue.R", + "sha256": "c2f7a3ebae2f47d84bff05f7711651a4fbfbf09908d2e3d5a0932941c2e530a2", + "language": "R", + "lines": 48, + "truncated": false, + "block": 9, + "row": 12954 + }, + { + "path": "scripts/test.py", + "sha256": "c61546d08fb154cb99239124a3a50a54581e4a7722674c710522d10293e026f4", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 9, + "row": 9902 + }, + { + "path": "scripts/test_align.py", + "sha256": "962809ac8cd145f8b47bae01bdd862b31840dbbf5e357eddc796d005240b95ad", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6673 + }, + { + "path": "scripts/test_ga.py", + "sha256": "8e0eafa59dc1843768fc428cc1922fae5712f1f3a8eccc5e49df8310777cacee", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6595 + }, + { + "path": "setup.py", + "sha256": "7dfd6b0c0a340102a58fa6966953e7e1d7191e8160d6b4e3555fc0f3689fec3e", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7327 + }, + { + "path": "test/scripts/CIRCLEseq_prepare_test_data.sh", + "sha256": "2878fd10ea3456c032abae216cbf13b22053a3a9dce676712bba26af1d39c933", + "language": "Shell", + "lines": 22, + "truncated": false, + "block": 9, + "row": 14218 + }, + { + "path": "test/scripts/CIRCLEseq_prepare_test_reference.sh", + "sha256": "45131053b516c4645a0101b8cec8d463d9e2316e796ae24cce783006b4f6a651", + "language": "Shell", + "lines": 21, + "truncated": false, + "block": 9, + "row": 14196 + }, + { + "path": "test/scripts/CIRCLEseq_test_bed.R", + "sha256": "dc01607d2d515fbf36f9fcc87f812d59871e8ca12234a1779f8c1938a99f1463", + "language": "R", + "lines": 18, + "truncated": false, + "block": 9, + "row": 12859 + }, + { + "path": "test/scripts/Test.sh", + "sha256": "45b8c29ed4dde2360767a5949c70c56b9588a562a9344a9e8ffe430bee8ac9e2", + "language": "Shell", + "lines": 4, + "truncated": false, + "block": 9, + "row": 13912 + }, + { + "path": "test/test_circleseq_merged.py", + "sha256": "fc4affa3b24f6430140fbf26894c95a1ae4c155f90a74af38a65310871176436", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7470 + }, + { + "path": "test/test_circleseq_std.py", + "sha256": "628837b608c5f22e3ac2c4da9474049e2bd86902821de66acdd26372c14163f6", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 7609 + }, + { + "path": "test/utils.py", + "sha256": "64f1af652b7aa1692cb1328a08f545f655a6ca19e605b8f246b11ef32e1081c7", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7383 + } + ] +} \ No newline at end of file diff --git a/manifests/5e/zenodo__18330972.json b/manifests/5e/zenodo__18330972.json new file mode 100644 index 0000000000000000000000000000000000000000..f344a06869926ce547cf90f48868a41075a8a472 --- /dev/null +++ b/manifests/5e/zenodo__18330972.json @@ -0,0 +1,228 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18330972", + "url": "10.5281/zenodo.18330972", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "INSPIRE/__init__.py", + "sha256": "f4db1a66d113006f5f0d6b0b8d90eb18db872632c118a3d73e88b435d2b7b42b", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6264 + }, + { + "path": "INSPIRE/model.py", + "sha256": "f496a5eb596a5e2e92e4b0dc9a044b5cfefab9b90ca6a0a06e9c8e117bdb8d79", + "language": "Python", + "lines": 774, + "truncated": false, + "block": 9, + "row": 12399 + }, + { + "path": "INSPIRE/networks.py", + "sha256": "85de5b0b7dd92500cf97e8a0aef25c9603624a9525ab643269fb64ac0542242f", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 11012 + }, + { + "path": "INSPIRE/utils.py", + "sha256": "1d9f9f2a964f0a9acc9d3f39572258fb773a5a8337d77923e7afddf8af65b7d0", + "language": "Python", + "lines": 643, + "truncated": false, + "block": 9, + "row": 12157 + }, + { + "path": "README.md", + "sha256": "6993d6d203267ce227af8190241d83f47087071bb407e23735bf48f073030b28", + "language": "Text", + "lines": 48, + "truncated": false, + "block": 9, + "row": 14632 + }, + { + "path": "compared_methods/run_banksy_harmony_pipeline.R", + "sha256": "a627f2f4a669e977deadf0553935437781382a29db4132539af10ca31c0f4b54", + "language": "R", + "lines": 128, + "truncated": false, + "block": 9, + "row": 13150 + }, + { + "path": "compared_methods/run_graphst_pipeline.py", + "sha256": "53ba828d2f8f6b1b8d0eef1a8ed98a805360d680a6dd9e32f1928e86131aa6d3", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 8290 + }, + { + "path": "compared_methods/run_harmony_bass_pipeline.R", + "sha256": "35fa0f7ef1e0553f58fbf8b5be71c87344a55af478f57bf7ed50f7d1b655b483", + "language": "R", + "lines": 83, + "truncated": false, + "block": 9, + "row": 13028 + }, + { + "path": "compared_methods/run_harmony_bayesspace_pipeline.R", + "sha256": "029cfc8dbc899be23c51ad62d2d71f1804c14e242cd880244ebd3ec08defc292", + "language": "R", + "lines": 105, + "truncated": false, + "block": 9, + "row": 13182 + }, + { + "path": "compared_methods/run_harmony_pipeline.R", + "sha256": "7b7981dc8d5eaebfc74f0d57b8a9a12b21aac12a85694d4fe4acfc0d5df82964", + "language": "R", + "lines": 64, + "truncated": false, + "block": 9, + "row": 12948 + }, + { + "path": "compared_methods/run_liger_pipeline.R", + "sha256": "c21abf9462ac0891b64580e4260cfb06228a9318d23ed7eaf693b6b3720dd8c6", + "language": "R", + "lines": 42, + "truncated": false, + "block": 9, + "row": 12882 + }, + { + "path": "compared_methods/run_mefisto_pipeline.py", + "sha256": "635f46c7d294eda02e542b7bf6b70c9653535fa93509dc3e40cfe20a10ded868", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7585 + }, + { + "path": "compared_methods/run_multispaeti_spatialleiden_pipeline.py", + "sha256": "6f4cc4bf6efddd829a5bf74c0bda95f1aa6029ba181b3433b5e8782aa30ad526", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 8293 + }, + { + "path": "compared_methods/run_nsfh_pipeline.py", + "sha256": "79f2720f099f7a6eb0da4a074c0f68ae9170acfed826c94f49804b6931860d9f", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 8388 + }, + { + "path": "compared_methods/run_paste_pipeline.py", + "sha256": "e342f71c074c6e6fc95daf28bc0d855f28089f32ec17fd3554950847b989c5a8", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 9094 + }, + { + "path": "compared_methods/run_precast_pipeline.R", + "sha256": "a8f606f832436555645f452b7b8bbd623d2822817e32bc07a22e57638ec52470", + "language": "R", + "lines": 37, + "truncated": false, + "block": 9, + "row": 12861 + }, + { + "path": "compared_methods/run_seurat_pipeline.R", + "sha256": "73b2953d605f79a5220a85a22dcd50db0913b222697211a5189c08710f9f317f", + "language": "R", + "lines": 44, + "truncated": false, + "block": 9, + "row": 12879 + }, + { + "path": "compared_methods/run_spagcn_harmony_pipeline_step1.py", + "sha256": "33b1a65bf4a631b0dcc84298b519266bb66faa2decb95b68abe8d730e4668f68", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 9, + "row": 8345 + }, + { + "path": "compared_methods/run_spagcn_harmony_pipeline_step2.R", + "sha256": "c63d7961ae31222f7cb972943dce9322e906cb2eef32b0ee07bfdc672a063747", + "language": "R", + "lines": 32, + "truncated": false, + "block": 9, + "row": 12808 + }, + { + "path": "compared_methods/run_spatialglue_harmony_pipeline_step1.py", + "sha256": "e0a11b586c22f1926bf4d06745643c89cfc30ccdaf149198cb3e528d3b97cc7e", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 7941 + }, + { + "path": "compared_methods/run_spatialglue_harmony_pipeline_step2.R", + "sha256": "b7c0ddceb713ce1f626624dd85ebf6df789b552e002a0b6f0b65ab6d28fd228f", + "language": "R", + "lines": 32, + "truncated": false, + "block": 9, + "row": 12807 + }, + { + "path": "compared_methods/run_spicemix_pipeline.py", + "sha256": "885da63caf5afcb1f9c95428e92bc2f37825f33f554a91b4f4f1b7fdc4f9828a", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 7889 + }, + { + "path": "compared_methods/run_stagate_harmony_pipeline_step1.py", + "sha256": "b3771b49e5566932d60ddc1c55710855165d2b56094b43b23693f703458aaa9b", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7426 + }, + { + "path": "compared_methods/run_stagate_harmony_pipeline_step2.R", + "sha256": "f9f12f6b36551c7eba7fda86e6368192106ae1edf5b082779d3f5489aea22047", + "language": "R", + "lines": 32, + "truncated": false, + "block": 9, + "row": 12812 + } + ] +} \ No newline at end of file diff --git a/manifests/5f/github.com__gkane26__rddm.json b/manifests/5f/github.com__gkane26__rddm.json new file mode 100644 index 0000000000000000000000000000000000000000..65fe8850b3ee398184155f68d3325d232a93a9d3 --- /dev/null +++ b/manifests/5f/github.com__gkane26__rddm.json @@ -0,0 +1,309 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/gkane26/rddm", + "url": "https://github.com/gkane26/rddm", + "host": "github.com", + "commit": "57e9c3bbaa10038b4af7d6b9e4675f5ec1ef17d0", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE.md", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.md", + "sha256": "c76fbd3f06eb9344e46527274c1b95f291364be95e50bbabe1e44ce560a3e09a", + "language": "License", + "lines": 595, + "truncated": false, + "block": 9, + "row": 2911 + }, + { + "path": "R/RcppExports.R", + "sha256": "e5a5b663a0e7e72df856b12b7ad3d0b983e44ab185d3214cb89d10bb25f311c3", + "language": "R", + "lines": 436, + "truncated": false, + "block": 9, + "row": 13815 + }, + { + "path": "R/base_diffusion_model.R", + "sha256": "f9766da28d6560db90e9c77f01f2609f113d9e6d12993927664dfa5cb6c157ee", + "language": "R", + "lines": 438, + "truncated": false, + "block": 9, + "row": 13734 + }, + { + "path": "R/diffusion_model_objectives.R", + "sha256": "17cf0a3ab4381f0ae040fe343e233e15f7fd7ea00164cd2d6dad98bfc1ba45f9", + "language": "R", + "lines": 367, + "truncated": false, + "block": 9, + "row": 13642 + }, + { + "path": "R/drift_diffusion_model.R", + "sha256": "d06b14331717c190e7ce82e4b5566bf69b81457d0b6edf31553e3fc843145ad2", + "language": "R", + "lines": 448, + "truncated": false, + "block": 9, + "row": 13764 + }, + { + "path": "R/evacc_model.R", + "sha256": "2790297990daf9d70cdfc8ba064e6a30895f905ea18450358fcd80311fe3f68c", + "language": "R", + "lines": 329, + "truncated": false, + "block": 9, + "row": 13672 + }, + { + "path": "R/get_rt_quantiles.R", + "sha256": "87356d215aecedc4c0989451cb7deca93239fbc0f1ad98274bc9bc70d88de43c", + "language": "R", + "lines": 32, + "truncated": false, + "block": 9, + "row": 12870 + }, + { + "path": "R/misc.R", + "sha256": "90adc75b70880bc9aaa555f8b57023634b97f4bc08543e9204eb3806cb9861ef", + "language": "R", + "lines": 34, + "truncated": false, + "block": 9, + "row": 12827 + }, + { + "path": "R/objectives.R", + "sha256": "af429202a15843f58e9c3a89ad66b46b7b1997aea7a021e22f9862ff977334cc", + "language": "R", + "lines": 73, + "truncated": false, + "block": 9, + "row": 12986 + }, + { + "path": "R/pulse_diffusion_model.R", + "sha256": "1741de2013ca915647a3ddc164457b27ed2b7b1f7e5b9103deaec3572368e515", + "language": "R", + "lines": 600, + "truncated": false, + "block": 9, + "row": 13789 + }, + { + "path": "R/pulse_stimulus.R", + "sha256": "2a96fec314142238f5eeed52312824fe3959323591c8a8c17b58d9b69da950b6", + "language": "R", + "lines": 132, + "truncated": false, + "block": 9, + "row": 13277 + }, + { + "path": "R/rddm-package.R", + "sha256": "70c787ab6cce44cf2a406dbf9c20319bfeea4279d585590ba12914d6a49c4830", + "language": "R", + "lines": 6, + "truncated": false, + "block": 9, + "row": 12748 + }, + { + "path": "R/sim_fpt.R", + "sha256": "5b3c01f7d631e3b949a80f3b0bcb85cf4eb80bba7d94803871b7da6174c21fd4", + "language": "R", + "lines": 44, + "truncated": false, + "block": 9, + "row": 12905 + }, + { + "path": "R/transform.R", + "sha256": "5b6a159de2353733780058212a9e6fc1c36a2433f42a5d76cbd42aba87e2a1d0", + "language": "R", + "lines": 25, + "truncated": false, + "block": 9, + "row": 12788 + }, + { + "path": "README.md", + "sha256": "6e98bb0d59bb0b46b92f93ef54ce411b57cd9290c0a9d4f5f3656640a6d3622b", + "language": "Text", + "lines": 57, + "truncated": false, + "block": 9, + "row": 14569 + }, + { + "path": "src/RcppExports.cpp", + "sha256": "475c53317f837c26ce5e8cb7cf6a5f3c72389f9bc30744999a89d7dcdaba5c8f", + "language": "C++", + "lines": 528, + "truncated": false, + "block": 9, + "row": 1007 + }, + { + "path": "src/bounds.cpp", + "sha256": "7af55cbde2c5381a2fbf3137ed95f91505131839e82fe015eb5b5667217aebf4", + "language": "C++", + "lines": 147, + "truncated": false, + "block": 9, + "row": 483 + }, + { + "path": "src/bounds.h", + "sha256": "8bab5606816f0dd90e8deee0217f82c2632d776b7da84748c9209e8202ffc200", + "language": "C/C++", + "lines": 10, + "truncated": false, + "block": 9, + "row": 1147 + }, + { + "path": "src/ddm_fpt.cpp", + "sha256": "5e3ee24b80510664adc60c235d6bd6aaabbba2c529517827bebf533efee87d3c", + "language": "C++", + "lines": 180, + "truncated": false, + "block": 9, + "row": 655 + }, + { + "path": "src/fast_rand.cpp", + "sha256": "4f58cfaf6350ba9f4b86e1ee8a83956394b3987c15de1aae46e3deda5b4c99b6", + "language": "C++", + "lines": 38, + "truncated": false, + "block": 9, + "row": 171 + }, + { + "path": "src/fast_rand.h", + "sha256": "055204922e2ad6c549ba475b74b7fe6e241ed5eef87d576cde5b65b2ceae1fec", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1133 + }, + { + "path": "src/pulse_nll.cpp", + "sha256": "3cb180f0511773e5e0daef2e3be3b67ba025089483e6f4d112caa9cd0638e916", + "language": "C++", + "lines": 324, + "truncated": false, + "block": 9, + "row": 872 + }, + { + "path": "src/pulse_nll.h", + "sha256": "4dd44ab22d98bfa3219443028d8555de67a08c84d1251320134ace8ce4894493", + "language": "C/C++", + "lines": 23, + "truncated": false, + "block": 9, + "row": 1232 + }, + { + "path": "src/pulse_predict.cpp", + "sha256": "bde30cf4670f74406e6c84d48d3364f7372a51192e94e0f6f5fc16d4f56fa786", + "language": "C++", + "lines": 102, + "truncated": false, + "block": 9, + "row": 537 + }, + { + "path": "src/pulse_trial_stimulus.cpp", + "sha256": "2458fe760b4b942c5454014118f09bd3fe99a15ea561264fb788691dd0ab1c98", + "language": "C++", + "lines": 37, + "truncated": false, + "block": 9, + "row": 196 + }, + { + "path": "src/pulse_trial_stimulus.h", + "sha256": "7fa13a9a9d86b00908871419a0593a56b443da49219c7fe0a29874c1f1e9a4cc", + "language": "C/C++", + "lines": 5, + "truncated": false, + "block": 9, + "row": 1135 + }, + { + "path": "src/sim_ddm.cpp", + "sha256": "01217819616e3d2df7e475f3875be60bf64a0e0443d410de36f6f20db7383db6", + "language": "C++", + "lines": 377, + "truncated": false, + "block": 9, + "row": 838 + }, + { + "path": "src/sim_evacc.cpp", + "sha256": "1488b95e6b9abe5cfcea579894de15c1fc5291178822d7498bda3e87b2d893c3", + "language": "C++", + "lines": 741, + "truncated": false, + "block": 9, + "row": 986 + }, + { + "path": "src/sim_pulse.cpp", + "sha256": "ae9c22f3a56a15299f416d9fd97a3215e28bb23b4001de764679419b4bcad2b9", + "language": "C++", + "lines": 360, + "truncated": false, + "block": 9, + "row": 853 + }, + { + "path": "src/sim_pulse.h", + "sha256": "8edce47eb48b9f7560d533aca8bb1c49e24cc94fc327dfe6ffb78a54663e3581", + "language": "C/C++", + "lines": 16, + "truncated": false, + "block": 9, + "row": 1169 + }, + { + "path": "src/urgency.cpp", + "sha256": "24f28285e6d2c5cd9ca4ff39eb21ff0411647907e1d4edb6c190c0e087282ecd", + "language": "C++", + "lines": 96, + "truncated": false, + "block": 9, + "row": 370 + }, + { + "path": "src/urgency.h", + "sha256": "7763382059a88462098925577706aa5df3fbabe04092b1549d8ce6cedc588d80", + "language": "C/C++", + "lines": 9, + "truncated": false, + "block": 9, + "row": 1142 + }, + { + "path": "vignettes/getting-started.Rmd", + "sha256": "35dfb22e03d72d5e377bc3432a8ec9780c77c376f449be6e1f0e4879be956d7b", + "language": "R", + "lines": 93, + "truncated": false, + "block": 9, + "row": 13098 + } + ] +} \ No newline at end of file diff --git a/manifests/5f/github.com__materialsinformaticsdb__midb-specs.json b/manifests/5f/github.com__materialsinformaticsdb__midb-specs.json new file mode 100644 index 0000000000000000000000000000000000000000..496a301eff568a4f6f188cad125c8b6a3f616bf3 --- /dev/null +++ b/manifests/5f/github.com__materialsinformaticsdb__midb-specs.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/materialsinformaticsdb/midb-specs", + "url": "https://github.com/MaterialsInformaticsDB/MIDb-Specs/blob/main/nlpe_schema.json", + "host": "github.com", + "commit": "73b07bb39d01f217f0b1b9a0080711b6cf5a6b7f", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "1a0940934ed046e6bb5da5e382572d578f6f97ebee83d9d2bf45bb01769e79dc", + "language": "Text", + "lines": 2, + "truncated": false, + "block": 9, + "row": 14452 + } + ] +} \ No newline at end of file diff --git a/manifests/60/zenodo__17543831.json b/manifests/60/zenodo__17543831.json new file mode 100644 index 0000000000000000000000000000000000000000..00ff3a30e346862aefaa7a265d257dc183248039 --- /dev/null +++ b/manifests/60/zenodo__17543831.json @@ -0,0 +1,21 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:17543831", + "url": "10.5281/ZENODO.17543831", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Figures.ipynb", + "sha256": "fe19b9f776b966a402bda9442175d5220fa6c88dba809c2a1fc4393c38cd4735", + "language": "Jupyter", + "lines": 835, + "truncated": false, + "block": 9, + "row": 2671 + } + ] +} \ No newline at end of file diff --git a/manifests/61/github.com__davidemms__orthofinder.json b/manifests/61/github.com__davidemms__orthofinder.json new file mode 100644 index 0000000000000000000000000000000000000000..7f3a6a82fd37e05c6a1509c6ab73794d6e67e021 --- /dev/null +++ b/manifests/61/github.com__davidemms__orthofinder.json @@ -0,0 +1,408 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/davidemms/orthofinder", + "url": "https://github.com/davidemms/OrthoFinder", + "host": "github.com", + "commit": "43f9bc7273a33d2e7a4e8d1c55b5117ed7f08a42", + "license": "GPL-3.0", + "license_confirmed_by": "license file License.md", + "redistribution": "yes", + "files": [ + { + "path": "License.md", + "sha256": "589ed823e9a84c56feb95ac58e7cf384626b9cbf4fda2a907bc36e103de1bad2", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2232 + }, + { + "path": "README.md", + "sha256": "8811dcdd61494a3f4279160d712e5b5e183db03ccb9b0b3e6aa6529dbd68e047", + "language": "Text", + "lines": 520, + "truncated": false, + "block": 9, + "row": 14749 + }, + { + "path": "orthofinder.py", + "sha256": "889b6ccebd8b74bb3d9f2f871866c3a590a4ac2955585dd43daeb181d78a2bc2", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 9, + "row": 6381 + }, + { + "path": "scripts_of/__main__.py", + "sha256": "9137f213908d8cd3ee7b23471dce31150b9875cfc5d7443f37386dc2bdf0edf5", + "language": "Python", + "lines": 1430, + "truncated": false, + "block": 9, + "row": 12591 + }, + { + "path": "scripts_of/accelerate.py", + "sha256": "75d23064e59923e3220530422f3df48a8753c587905dcdc9c2982cb34a6a5ae6", + "language": "Python", + "lines": 384, + "truncated": false, + "block": 9, + "row": 11683 + }, + { + "path": "scripts_of/astral.py", + "sha256": "4a4df18b3cd7e6fe1d654ac11eefd5dbf63f93c74ee243960c2797ad4b4c4c6d", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6852 + }, + { + "path": "scripts_of/bin/mafft/libexec/mafftash_premafft.pl", + "sha256": "0594ba064e06ad0b647a9927bc73541edd85fd18c09a65c7a5c849b318b93ef9", + "language": "Perl", + "lines": 464, + "truncated": false, + "block": 9, + "row": 6069 + }, + { + "path": "scripts_of/bin/mafft/libexec/seekquencer_premafft.pl", + "sha256": "bfe2f4cd579c3734ac9a4979c9a1b577bef8993f5242c342019df2c490d82fd3", + "language": "Perl", + "lines": 600, + "truncated": false, + "block": 9, + "row": 6075 + }, + { + "path": "scripts_of/blast_file_processor.py", + "sha256": "9e71c682bc47747c15dffcbf82c88560871a7825eca3f4164d90bcadc92a5b49", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 9516 + }, + { + "path": "scripts_of/consensus_tree.py", + "sha256": "6bd34afa6bb73386f26e6da1a58685ca540c9c6ad74edaf23212fa60e7b57191", + "language": "Python", + "lines": 292, + "truncated": false, + "block": 9, + "row": 10815 + }, + { + "path": "scripts_of/fasta_writer.py", + "sha256": "061e3277a12ae1b2a961036ae32b7d1df4137cd9e13724f500502a516f2a5e2e", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 9, + "row": 8957 + }, + { + "path": "scripts_of/files.py", + "sha256": "8ca24aece5ab8f4ab792c6d8173452ea0bf8b8360614c454e980b716697151a3", + "language": "Python", + "lines": 869, + "truncated": false, + "block": 9, + "row": 12423 + }, + { + "path": "scripts_of/gathering.py", + "sha256": "42742848f8bfe6e52cfbbb9f0793e5e3ff3c4d0292f11320802c2f2077bf4ef6", + "language": "Python", + "lines": 561, + "truncated": false, + "block": 9, + "row": 12188 + }, + { + "path": "scripts_of/matrices.py", + "sha256": "26c0b6ffc4caba8624911ec05bfe789a88ae9fe56b4e4cabffb8576b7f9304d8", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 8443 + }, + { + "path": "scripts_of/mcl.py", + "sha256": "41a184c74b955d2320b72bc8ae140089ad34007e5a085615ee784833d52239d2", + "language": "Python", + "lines": 296, + "truncated": false, + "block": 9, + "row": 11352 + }, + { + "path": "scripts_of/newick.py", + "sha256": "5e4c5759ab75778c6c0459772e8f335e046e04592c8bd829c6982517ba4f2e68", + "language": "Python", + "lines": 431, + "truncated": false, + "block": 9, + "row": 11612 + }, + { + "path": "scripts_of/orthologues.py", + "sha256": "c11b432f612ee97641ae9252f53817b65de69132fedab7aafb67be585baaa2e7", + "language": "Python", + "lines": 1265, + "truncated": false, + "block": 9, + "row": 12544 + }, + { + "path": "scripts_of/parallel_task_manager.py", + "sha256": "e7f190e2114646d44ce3519117c1e6dc53bb28383a2d35f76ee1c12a486a5693", + "language": "Python", + "lines": 368, + "truncated": false, + "block": 9, + "row": 11552 + }, + { + "path": "scripts_of/probroot.py", + "sha256": "17fa8357e04dbea012191098204615faf1b484582efd59df9134e3d9cbd1462b", + "language": "Python", + "lines": 461, + "truncated": false, + "block": 9, + "row": 11973 + }, + { + "path": "scripts_of/program_caller.py", + "sha256": "3491ffc1cb57c84dbad5eafbac3fef2434489b2023c233d44d9f5aa1bcb664be", + "language": "Python", + "lines": 400, + "truncated": false, + "block": 9, + "row": 11893 + }, + { + "path": "scripts_of/resolve.py", + "sha256": "cac969f1c9773b66af2bb69e33b84ccd1d5eee87d825dd714ed1e3cfae424277", + "language": "Python", + "lines": 488, + "truncated": false, + "block": 9, + "row": 11813 + }, + { + "path": "scripts_of/sample_genes.py", + "sha256": "6e0c1ff02135e2a0a1d4b8a7966a221766d9d32a446b3f3c0fc60eb3aa5d12a4", + "language": "Python", + "lines": 295, + "truncated": false, + "block": 9, + "row": 10993 + }, + { + "path": "scripts_of/split_ortholog_files.py", + "sha256": "a2fed5cc918a3634385fa4e38a593c3c62ece5dd3fa679ec4804d095b7534585", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7965 + }, + { + "path": "scripts_of/stag.py", + "sha256": "be1042210c91050f2f062045e26aecd99bbe1a25350136633f2a268d94209b46", + "language": "Python", + "lines": 298, + "truncated": false, + "block": 9, + "row": 11207 + }, + { + "path": "scripts_of/stats.py", + "sha256": "f6c90765ac0d11e39b23759170477b9d633f7b9f216e3db665fa13c0e17cd14b", + "language": "Python", + "lines": 235, + "truncated": false, + "block": 9, + "row": 11302 + }, + { + "path": "scripts_of/stride.py", + "sha256": "4f89e5c1f2f3c509f10e529fb6b3869da5b363f3d2ddbde6bfe6668b5b9645ea", + "language": "Python", + "lines": 745, + "truncated": false, + "block": 9, + "row": 12306 + }, + { + "path": "scripts_of/tree.py", + "sha256": "718bc79cf51a932c59dff3cca9e9889aab9ec415051d4ce2f988e185001b9dfd", + "language": "Python", + "lines": 1858, + "truncated": false, + "block": 9, + "row": 12560 + }, + { + "path": "scripts_of/trees2ologs_dlcpar.py", + "sha256": "921b9ffbdf263136c224666b73b8b340756bb7e8a9af147b4628f1e13e916b1b", + "language": "Python", + "lines": 300, + "truncated": false, + "block": 9, + "row": 11333 + }, + { + "path": "scripts_of/trees2ologs_of.py", + "sha256": "089bc9d2472a56a5242619ad4d364c655db7fac2324abf9f5b1e8c95e385ed9a", + "language": "Python", + "lines": 1591, + "truncated": false, + "block": 9, + "row": 12602 + }, + { + "path": "scripts_of/trees_msa.py", + "sha256": "35e00ebb60d0599a2989a6daca9753a72ecad5e771eaa9dad488cd7aece73164", + "language": "Python", + "lines": 426, + "truncated": false, + "block": 9, + "row": 11957 + }, + { + "path": "scripts_of/trim.py", + "sha256": "6e24eeee3400c87ed82606f2b219769ae2bf4d455f20af213d58888f1a4ddaf6", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 9, + "row": 10601 + }, + { + "path": "scripts_of/util.py", + "sha256": "36c44181d016d5cca5e51fc4471e821a4b5e2f325eebbec09472c66dd26cad3d", + "language": "Python", + "lines": 530, + "truncated": false, + "block": 9, + "row": 11921 + }, + { + "path": "scripts_of/wrapper_phyldog.py", + "sha256": "aa387e30bd428adc80689b6461f7b219f8bafbd38bf0cac305b0478e77cb6c5b", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 9, + "row": 10503 + }, + { + "path": "setup.py", + "sha256": "f02a5ba7c7c1161a24df5e4626fa0e852f81489f9eba1e1ae08ef88f43bc8074", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 9113 + }, + { + "path": "tests/TestArgumentCombinations.py", + "sha256": "9ea4d85b2d31ecf64e5c4a5ffc830914b8c57a4672ca485ec8dd56d45e8830b0", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9355 + }, + { + "path": "tests/test_consensus_tree.py", + "sha256": "be317d6bffcf6a69205718b84493231a0b51819adf11aacf673adb83a11b5b2a", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 9136 + }, + { + "path": "tests/test_hog_writer.py", + "sha256": "44d32ce0bcb04802fe6836ff32b878bc70f2dce32e566ec66b708d458914e2c1", + "language": "Python", + "lines": 209, + "truncated": false, + "block": 9, + "row": 10453 + }, + { + "path": "tests/test_orthofinder.py", + "sha256": "be24c8a918ae9979928fc350eaf227f4eee2322cad5e52e82dde2b6079da525a", + "language": "Python", + "lines": 1088, + "truncated": false, + "block": 9, + "row": 12562 + }, + { + "path": "tests/test_program_caller.py", + "sha256": "bd2113afa2e1ffd27d5c7d78ef712f0f300e149c6c2d14be809556867ba7d825", + "language": "Python", + "lines": 216, + "truncated": false, + "block": 9, + "row": 10792 + }, + { + "path": "tools/convert_orthofinder_tree_ids.py", + "sha256": "d522561e3b6d30139e3b099197dc20ef73b2c5aaa016504b38edc33551bf451d", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8599 + }, + { + "path": "tools/create_files_for_hogs.py", + "sha256": "be2ff93708b896d6dd9cbb559fe5375c1c4a690c8fc90707ac8f7f485aad8266", + "language": "Python", + "lines": 241, + "truncated": false, + "block": 9, + "row": 10741 + }, + { + "path": "tools/make_ultrametric.py", + "sha256": "2b801fb9ecb4e3e4d4db2ce723ad6cd813bc8a1ef9e3fdef45a4a43b9ed009c9", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 8196 + }, + { + "path": "tools/orthogroup_gene_count.py", + "sha256": "9bb0955e94a4321d2c7f87ac0d6d706cfa60fb84b03c25942c0da615ec6c7653", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6874 + }, + { + "path": "tools/primary_transcript.py", + "sha256": "405daa11e5d1b113cb67ae0f8e94e061c9d131f061045e982332fc4719b0a423", + "language": "Python", + "lines": 219, + "truncated": false, + "block": 9, + "row": 10346 + } + ] +} \ No newline at end of file diff --git a/manifests/61/github.com__hou-lab-cshl__cheese3d.json b/manifests/61/github.com__hou-lab-cshl__cheese3d.json new file mode 100644 index 0000000000000000000000000000000000000000..50fea84816a5031cbe6ee841ca4cd0730ce882b8 --- /dev/null +++ b/manifests/61/github.com__hou-lab-cshl__cheese3d.json @@ -0,0 +1,300 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/hou-lab-cshl/cheese3d", + "url": "https://github.com/Hou-Lab-CSHL/cheese3d", + "host": "github.com", + "commit": "07ef417d37166ad1a272767340827ebe11bd1fe2", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "0c7613a6278638e56e7c935d13e8912f29087d9a80c02b3f4cd4a2150038867f", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2807 + }, + { + "path": "README.md", + "sha256": "51bb97a039ec30c2245aa97c528bbfa614dba7e1bf26aa51081e266caeb9c67f", + "language": "Text", + "lines": 62, + "truncated": false, + "block": 9, + "row": 14647 + }, + { + "path": "docs/source/conf.py", + "sha256": "5a6df2e4455b2463467a438c3130aa339b6edc6e63c8e96b8812f1021bb097d0", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 7913 + }, + { + "path": "packages/cheese3d-annotator/cheese3d_annotator/data.py", + "sha256": "904c9531fc0f281ada61e69f0d5bb6f62642091b735e690d09bcaf962446c53b", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 9, + "row": 9687 + }, + { + "path": "packages/cheese3d-annotator/cheese3d_annotator/data_visualizer/plot.py", + "sha256": "99457c17124e275052bb6bfdfc01606ec3d896d6ab606befc83b9fc19cadfb93", + "language": "Python", + "lines": 386, + "truncated": false, + "block": 9, + "row": 11433 + }, + { + "path": "packages/cheese3d-annotator/cheese3d_annotator/data_visualizer/qc_video.py", + "sha256": "3b1fbf559af75548ed854a6d82f8c77179b8e3b6aefa77869a2f0ff4339c0f8b", + "language": "Python", + "lines": 565, + "truncated": false, + "block": 9, + "row": 11995 + }, + { + "path": "packages/cheese3d-annotator/cheese3d_annotator/data_visualizer/rig_view.py", + "sha256": "3304200690d7e56d5083e08262064ad21d83f46812df16badca6b4309edb7737", + "language": "Python", + "lines": 504, + "truncated": false, + "block": 9, + "row": 11913 + }, + { + "path": "packages/cheese3d-annotator/cheese3d_annotator/data_visualizer/widget.py", + "sha256": "89666955abd466f3acabff775a43389b90e5064ebb39ae798ac6d94bf84d8f69", + "language": "Python", + "lines": 412, + "truncated": false, + "block": 9, + "row": 11437 + }, + { + "path": "packages/cheese3d-annotator/cheese3d_annotator/widget.py", + "sha256": "d4c16b3e377c618bfee309deb4e4a0f36a57d7f7e70d066c85e9698c88967b3f", + "language": "Python", + "lines": 683, + "truncated": false, + "block": 9, + "row": 12190 + }, + { + "path": "packages/cheese3d/cheese3d/__main__.py", + "sha256": "c1419f59a3f1a71b69d5918040325e7a1cdc3364362ddb256ea1084dcc3ec019", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6136 + }, + { + "path": "packages/cheese3d/cheese3d/allego_fr.py", + "sha256": "942429a55a2a18bf12d49f36a66e65b3e214c8290d6e16aff8c1a80fb980e0ad", + "language": "Python", + "lines": 322, + "truncated": false, + "block": 9, + "row": 11257 + }, + { + "path": "packages/cheese3d/cheese3d/anatomy.py", + "sha256": "71632b460b040971ada5d1458ba5be5140177fe3b3a1a18ab1436968d81b914e", + "language": "Python", + "lines": 599, + "truncated": false, + "block": 9, + "row": 12013 + }, + { + "path": "packages/cheese3d/cheese3d/backends/core.py", + "sha256": "2505eee3350e81dfee8da59d46890f10745545d16031c31cbfdfd41e10efa038", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 7394 + }, + { + "path": "packages/cheese3d/cheese3d/backends/dlc.py", + "sha256": "472f15416c8d0419a894c4c0287b464ac46c2a3d2015b7a63c118533e205320f", + "language": "Python", + "lines": 253, + "truncated": false, + "block": 9, + "row": 10991 + }, + { + "path": "packages/cheese3d/cheese3d/cli.py", + "sha256": "c6376a3cc3f6857694b5ae9e4af085fa6f085be63ab2f06a8bce92f966966724", + "language": "Python", + "lines": 317, + "truncated": false, + "block": 9, + "row": 11160 + }, + { + "path": "packages/cheese3d/cheese3d/config.py", + "sha256": "c9fd0569d936322c4ba6e4b922e90e5e49ea890669b8f03e329dae56b97ef1dc", + "language": "Python", + "lines": 361, + "truncated": false, + "block": 9, + "row": 11412 + }, + { + "path": "packages/cheese3d/cheese3d/generate_videos.py", + "sha256": "cb4df5382f47a8083c62a5d5138d78b59418e4ba309fa807893d3d9b1d3f47c8", + "language": "Python", + "lines": 318, + "truncated": false, + "block": 9, + "row": 11047 + }, + { + "path": "packages/cheese3d/cheese3d/interactive.py", + "sha256": "d8642b19d1af948bb5756f43d41ab6d1354d4651544a815c5b0420b8d75c63ac", + "language": "Python", + "lines": 1016, + "truncated": false, + "block": 9, + "row": 12391 + }, + { + "path": "packages/cheese3d/cheese3d/project.py", + "sha256": "a7a4358b06d3f304e19cfe2029bc9b2553aa5026d1c36d818c6841bb895aa3db", + "language": "Python", + "lines": 851, + "truncated": false, + "block": 9, + "row": 12402 + }, + { + "path": "packages/cheese3d/cheese3d/synchronize/aligners.py", + "sha256": "30d94d5e79146ff233688fdb3cc6e64168e0e4d54f8493a08e85ade6f75c0c06", + "language": "Python", + "lines": 212, + "truncated": false, + "block": 9, + "row": 10801 + }, + { + "path": "packages/cheese3d/cheese3d/synchronize/core.py", + "sha256": "2628876364d671c50c88184533703096ad1962f698ee42cd413fce9f6324a501", + "language": "Python", + "lines": 336, + "truncated": false, + "block": 9, + "row": 11446 + }, + { + "path": "packages/cheese3d/cheese3d/synchronize/readers.py", + "sha256": "59c29ad7705d3cc06d1a582e06fda3b85ec53dc989adacdca8afc82e8bd7b9d5", + "language": "Python", + "lines": 254, + "truncated": false, + "block": 9, + "row": 10976 + }, + { + "path": "packages/cheese3d/cheese3d/synchronize/utils.py", + "sha256": "59cffe7ffd1ec60295dd04fdd2a7fa137b9a0434c0f04d371cc5344c270c3fd8", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 9, + "row": 6524 + }, + { + "path": "packages/cheese3d/cheese3d/utils.py", + "sha256": "3cc9134437d086e1ef804cc4d5de044957991572ddc5046cfe090a1500fc56ab", + "language": "Python", + "lines": 320, + "truncated": false, + "block": 9, + "row": 10865 + }, + { + "path": "packages/cheese3d/tests/conftest.py", + "sha256": "b1e6d1c87a99c3e39ba9855327b5ef7a5f147e6e9b7d6d2baaf705b6fdcb46bb", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 8233 + }, + { + "path": "packages/cheese3d/tests/test_checkpoint.py", + "sha256": "04f265570d1051832c061f3db94ab44c6c290840064882ee7d04407d5f24ae62", + "language": "Python", + "lines": 250, + "truncated": false, + "block": 9, + "row": 11131 + }, + { + "path": "paper/fig1-cheese3d-accuracy.ipynb", + "sha256": "e700709794a1839479d9268843c7cb8864ce2526bc34ee730d812e47760e051c", + "language": "Jupyter", + "lines": 291, + "truncated": false, + "block": 9, + "row": 2494 + }, + { + "path": "paper/fig2-cheese3d-jitter-analysis.ipynb", + "sha256": "85bdca6ea66138495add91b04aa6a6b10b62035293d19d0683e4dcc9d28d0799", + "language": "Jupyter", + "lines": 1153, + "truncated": false, + "block": 9, + "row": 2723 + }, + { + "path": "paper/fig3-part1-cheese3d-general-anesthesia-eeg.ipynb", + "sha256": "1abb8aaf6c7521b46b072e63cc61f6b707cece9face04c50584a254ab897eea7", + "language": "Jupyter", + "lines": 1578, + "truncated": false, + "block": 9, + "row": 2733 + }, + { + "path": "paper/fig3-part2-prediction-of-eeg-from-facial-features.ipynb", + "sha256": "ae8905ce4febc5cbd456ecdb85e1aab09f023b8a6e3f2242a0cc4614a25aa84d", + "language": "Jupyter", + "lines": 1717, + "truncated": false, + "block": 9, + "row": 2736 + }, + { + "path": "paper/fig3-part3-cheese3d-redose-facial-features.ipynb", + "sha256": "ff85841ea482968279375f190b63dc8c1a26c4b286bc81129c631d7bf43bda94", + "language": "Jupyter", + "lines": 672, + "truncated": false, + "block": 9, + "row": 2690 + }, + { + "path": "paper/fig4-part1-chewing-whole-face-kinematics.ipynb", + "sha256": "705995fc1a4541710f22f4a75c3273f1c55bace4c4ddf6af7819da15fedc4a74", + "language": "Jupyter", + "lines": 1220, + "truncated": false, + "block": 9, + "row": 2724 + } + ] +} \ No newline at end of file diff --git a/manifests/63/github.com__rsodre__fulldomecameraforunity.json b/manifests/63/github.com__rsodre__fulldomecameraforunity.json new file mode 100644 index 0000000000000000000000000000000000000000..939548eca8bf02454b623b7ef0121ec87a22d90d --- /dev/null +++ b/manifests/63/github.com__rsodre__fulldomecameraforunity.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/rsodre/fulldomecameraforunity", + "url": "https://github.com/rsodre/FulldomeCameraForUnity", + "host": "github.com", + "commit": "ba5450637b7435c4b56704fa8cc85b70b3c80712", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "8818973fc1112278ae91d31c61e2102e5b2f292ade4bd7731b24729018206a12", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2795 + }, + { + "path": "README.md", + "sha256": "ba64e8863d6d136df0504c29b493ecd3e2451e552f9d0a066206f8fd34c25006", + "language": "Text", + "lines": 193, + "truncated": false, + "block": 9, + "row": 14722 + } + ] +} \ No newline at end of file diff --git a/manifests/63/github.com__vandinlab__cphyt-gnn.json b/manifests/63/github.com__vandinlab__cphyt-gnn.json new file mode 100644 index 0000000000000000000000000000000000000000..3d9b496a414d00d92c392249a528e9710afc30ea --- /dev/null +++ b/manifests/63/github.com__vandinlab__cphyt-gnn.json @@ -0,0 +1,219 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/vandinlab/cphyt-gnn", + "url": "https://github.com/VandinLab/CPhyT-GNN", + "host": "github.com", + "commit": "51028fdb5e0a9eb06e8a174cf3ff643125cb4d11", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "b19a8dc4483245aa9a60cea75db0ec421103275d0541bcbae17a7d563033ae1f", + "language": "Text", + "lines": 241, + "truncated": false, + "block": 9, + "row": 14733 + }, + { + "path": "src/CloMu.py", + "sha256": "d3178545512fcea8285833a989ffeeab017fff2fff7f5141bffcb26b61aedfb3", + "language": "Python", + "lines": 1581, + "truncated": false, + "block": 9, + "row": 12517 + }, + { + "path": "src/cancer_progression.py", + "sha256": "251ca7c99571870d40ac58c46909521044ef1569c1aab8aef934699ff61bea0a", + "language": "Python", + "lines": 1621, + "truncated": false, + "block": 9, + "row": 12607 + }, + { + "path": "src/cancer_progression_experiments.py", + "sha256": "e1d6204adbea1fb643ef392f292c9087a5c5bc5a7f0ba7301aa875c2d4da40b8", + "language": "Python", + "lines": 1057, + "truncated": false, + "block": 9, + "row": 12576 + }, + { + "path": "src/compare_methods_cancer_progression.py", + "sha256": "1f8aa83f9def4ef89a3d9ff0e6d88dbcb34aa2061f57ace23671b95d39596abb", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 8863 + }, + { + "path": "src/compare_methods_survival.py", + "sha256": "f62636f708f1b01cc58c46d01fb00c1faf0ea87afafb58bfce8f577ff65bae6f", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 8751 + }, + { + "path": "src/compute_embeddings.py", + "sha256": "a7458a7d8523eb9561eb3d37159a022592c35715d46d112534f6ff5184ba9935", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 9, + "row": 10087 + }, + { + "path": "src/plot_simulations_results.py", + "sha256": "b8926f7f2f2c92d2a64f6d73a89edcc9ae248d5e6baf736e7225379d1ae6c0f0", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 9, + "row": 10790 + }, + { + "path": "src/pre_process_data_cancer_progression.py", + "sha256": "1b7a7003c824044adba43b5811744227bffd5ffb35ded1bae58b8866d83dab89", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 9, + "row": 10934 + }, + { + "path": "src/pre_process_data_survival_analysis.py", + "sha256": "fe53a2dc166d2d6f644f7a2deb62aed8f05747f050d450cb412d5222ada49f23", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 9558 + }, + { + "path": "src/pre_process_data_survival_prediction.py", + "sha256": "1b74fae4af0eaee36f0a883bad68f4cfd468ea8dbe6fe76f26fa036f21e16a6c", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 9, + "row": 9541 + }, + { + "path": "src/predict_survival_times.py", + "sha256": "5158b29b7055e1dd175980fc98d4d8438423bed6974d3be8481daf9917b4a2ab", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 9, + "row": 10354 + }, + { + "path": "src/simulations.py", + "sha256": "394e3fc3fb862a78ee6391a3cbf603a8a4916472e3924d28ccc46e66aaccad85", + "language": "Python", + "lines": 1309, + "truncated": false, + "block": 9, + "row": 12541 + }, + { + "path": "src/survival.py", + "sha256": "e04d3757f5c9765800cb7f9256d88049be18f31885b3d7b2d08ea3fac7585c80", + "language": "Python", + "lines": 2253, + "truncated": false, + "block": 9, + "row": 12661 + }, + { + "path": "src/survival_analysis.py", + "sha256": "b1ae8c314480e713eb1c7c83ea344e4ee41afb744ff5954d82693a1d2cf84098", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 9, + "row": 10894 + }, + { + "path": "src/survival_prediction.py", + "sha256": "128eec48da848c36dfd098f4818223fc262f282e520433524f89b4570c260d39", + "language": "Python", + "lines": 1557, + "truncated": false, + "block": 9, + "row": 12569 + }, + { + "path": "src/train_survival_model.py", + "sha256": "2bd8d22fd2677cb048970802ba8d2304d64a22f23a78f505c18e9467d87cebc1", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 9, + "row": 10088 + }, + { + "path": "src/train_tumor_model.py", + "sha256": "ea1a6b3ac0d578e470b68b7ffb762e89551ec9c2492435fa203044de16bf9db3", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 9742 + }, + { + "path": "src/tumor_model.py", + "sha256": "498f6eac9e6f9cb9df0ef5bf2c17b3c78511ca6a18695976aa3db2f2f340afef", + "language": "Python", + "lines": 1862, + "truncated": false, + "block": 9, + "row": 12609 + }, + { + "path": "src/tune_survival_model.py", + "sha256": "1a1ad847846d3001f8b6bba8a0328f7e088ef13b44da1e13dc43514f48aeba04", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 9, + "row": 10570 + }, + { + "path": "src/tune_tumor_model.py", + "sha256": "47851acfe6d1cd97f9f4422d23432cd5277de938cd9c8f1e500a198142659116", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 9, + "row": 10536 + }, + { + "path": "src/utils.py", + "sha256": "64da8f7d228eb7fdc828aea869e260382ae7e7674a953dcae66d9caeea1df18c", + "language": "Python", + "lines": 638, + "truncated": false, + "block": 9, + "row": 12044 + } + ] +} \ No newline at end of file diff --git a/manifests/63/github.com__xiaolibird__missingfps.json b/manifests/63/github.com__xiaolibird__missingfps.json new file mode 100644 index 0000000000000000000000000000000000000000..8dbca60926ab893265d28eba359aee7df84c1a0a --- /dev/null +++ b/manifests/63/github.com__xiaolibird__missingfps.json @@ -0,0 +1,1074 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/xiaolibird/missingfps", + "url": "https://github.com/xiaolibird/MissingFPS", + "host": "github.com", + "commit": "0e4fff1db6de12486e6262fdb1c979d1fbdd6a33", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "443ec1f1b8e7254b77b991ad5e4a1ba0a2fbd64d9483d40c34e8ea72c97423bf", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2842 + }, + { + "path": "README.md", + "sha256": "8f69c234fc8dca76a7bc6ecd56d4f6fbac91689ab099250b272deb64cd45d444", + "language": "Text", + "lines": 141, + "truncated": false, + "block": 9, + "row": 14663 + }, + { + "path": "experiments/mf_main/01_prepare_data.py", + "sha256": "4df4a6ba29ab74bf42b775cc622277d8c9eb3d9f82870c6a660199bbdc22fab7", + "language": "Python", + "lines": 260, + "truncated": false, + "block": 9, + "row": 10732 + }, + { + "path": "experiments/mf_main/02_run_sweep.py", + "sha256": "792ecdad09959986ffd6b50f494c941f77f05828cf1f22a5a0e932db74ba622b", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 9, + "row": 10169 + }, + { + "path": "experiments/mf_main/03_extract_fingerprints.py", + "sha256": "9b1fa7ee1a54e394485a664bddc5dc5c624ebfe17211de697d6b9e2e230fcb2e", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 9, + "row": 9498 + }, + { + "path": "experiments/mf_main/03b_augment_instances.py", + "sha256": "1c527c9f2eeb0fc92d8dce831aff586246123acbe6033a5c7b690bc58ea24c50", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 9, + "row": 9803 + }, + { + "path": "experiments/mf_main/03c_landscape_descriptors.py", + "sha256": "bb3b23d03ab19eab5acc333de6096c89f19be9da9681ca2b8100265122695d8d", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9359 + }, + { + "path": "experiments/mf_main/04_decoupling_analysis.py", + "sha256": "a161d4bb6d8d6ca4f1c039e33bcdd15ccfe2e489d77b3122d02f1e1d5051429e", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 9, + "row": 9826 + }, + { + "path": "experiments/mf_main/05_build_recommender.py", + "sha256": "6ed888d1a229203cf79e3ac15694fa6dc917d6cb069c06a80efea1b123fe17d9", + "language": "Python", + "lines": 211, + "truncated": false, + "block": 9, + "row": 10683 + }, + { + "path": "experiments/mf_main/06_lodo_cv.py", + "sha256": "d8e45e14eec87926fa2b947ff8db688788fd95ac601e019f846ec4a14cbddd3f", + "language": "Python", + "lines": 259, + "truncated": false, + "block": 9, + "row": 11049 + }, + { + "path": "experiments/mf_main/07_fahzu_validation.py", + "sha256": "4bebca355b159cab330f622a362cb49f5b5005b898adc07324c69a5be6a6a6be", + "language": "Python", + "lines": 422, + "truncated": false, + "block": 9, + "row": 11633 + }, + { + "path": "experiments/mf_main/08_generate_figures.py", + "sha256": "043cfd61625dc51db35af1a8c184b191bdf13ea3839e3cfd4211eced4ddded73", + "language": "Python", + "lines": 792, + "truncated": false, + "block": 9, + "row": 12265 + }, + { + "path": "experiments/mf_main/analysis/fingerprint_redundancy.py", + "sha256": "96feda18abf6afed03758202edffadc0066e4f8ba1005e1f307412634900c11b", + "language": "Python", + "lines": 351, + "truncated": false, + "block": 9, + "row": 11213 + }, + { + "path": "experiments/mf_main/analysis/k_sensitivity.py", + "sha256": "bdde15e52f863b8642f78f06fca1312ac21b4048842c25b1637fbc4f9139e1d5", + "language": "Python", + "lines": 239, + "truncated": false, + "block": 9, + "row": 10749 + }, + { + "path": "experiments/mf_main/analysis/quick_look.py", + "sha256": "6a3f8d35f9cc8b4ddb1a1c6f9a0a408d42e0105a2e36ae81f61e371fdfe5ed45", + "language": "Python", + "lines": 391, + "truncated": false, + "block": 9, + "row": 11596 + }, + { + "path": "experiments/mf_main/analysis/threshold_calibration.py", + "sha256": "f462e097a24f1daf67f4815ccd95e7c0b80e9396aa67ede67c1169e102666b1c", + "language": "Python", + "lines": 331, + "truncated": false, + "block": 9, + "row": 11266 + }, + { + "path": "experiments/mf_main/analysis/weight_comparison.py", + "sha256": "35982745be5b5f866c101cdd479d4ef2b10daf99b1fff94448e7a1dac47340d9", + "language": "Python", + "lines": 294, + "truncated": false, + "block": 9, + "row": 11065 + }, + { + "path": "src/augmentation/__init__.py", + "sha256": "c501214492aad083fd8642adef80e0c4c00f351d898e33d4fd61d4c1827896a2", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6308 + }, + { + "path": "src/augmentation/instance_augmentor.py", + "sha256": "a9d3aada7c84a3094702921d96a8a1bed575ffa12f6364e3f4ce55e60c3da7ae", + "language": "Python", + "lines": 190, + "truncated": false, + "block": 9, + "row": 10004 + }, + { + "path": "src/augmentation/littles_test.py", + "sha256": "7e6fd50f3ec9b96c372f01df9af3699edad11bb8aecaaaaacb93aef64c1c4269", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 9, + "row": 8459 + }, + { + "path": "src/fingerprint/__init__.py", + "sha256": "3f069c33dd0a87dce86dc90645a8c07e09e3ab90e9e3936a8724c81f013565da", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7098 + }, + { + "path": "src/fingerprint/decoupling.py", + "sha256": "b4228b4156c679c07540458e4b885e2915aa553e8d47b3a12b09019eb42a8324", + "language": "Python", + "lines": 320, + "truncated": false, + "block": 9, + "row": 10837 + }, + { + "path": "src/fingerprint/dynamic.py", + "sha256": "0e4d552cd42a47a0d816928f117a351adb0c9545ab33bd43162db9aaf32b0e13", + "language": "Python", + "lines": 594, + "truncated": false, + "block": 9, + "row": 12049 + }, + { + "path": "src/fingerprint/landscape.py", + "sha256": "d9b5674eb454243db7c47ee2b877cb52d8a472ee9bede5f1b074f404f6a6fba2", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 9, + "row": 10505 + }, + { + "path": "src/fingerprint/perturbation.py", + "sha256": "3b941d464cb75689c3b1b5913304583661f3c821a94ca7e6714dbd021ac8b298", + "language": "Python", + "lines": 282, + "truncated": false, + "block": 9, + "row": 10819 + }, + { + "path": "src/fingerprint/static.py", + "sha256": "eb3f674bb36e062cf156a370737bfcf84b0df01701c0d758b6184258ae2e1b14", + "language": "Python", + "lines": 216, + "truncated": false, + "block": 9, + "row": 10262 + }, + { + "path": "src/framework/__init__.py", + "sha256": "cd0e7bc0d87f248f73d6eb24046a5c432bbec9c9301c7a25a493944927104031", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6840 + }, + { + "path": "src/framework/components/__init__.py", + "sha256": "3802f5be5bb10b3b8736cd236563959942d7c2357d8988fed14e254074bdb06a", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6782 + }, + { + "path": "src/framework/components/base.py", + "sha256": "afd5c98b2f4c09f74de8e3732cc981f1bf548984538388fb8ef59cfdcf26f29b", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 9, + "row": 10170 + }, + { + "path": "src/framework/components/builders/knn_jaccard.py", + "sha256": "f418394a3e6fcc0476810a82ed5c263a5a718f6c1a5be67ec107d50ec8564627", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 9, + "row": 10487 + }, + { + "path": "src/framework/components/datasets/ch5_datasets.py", + "sha256": "395dfe524ca77861c63c2e44f6ddc06370c741f9872c0afcaae4cf10af0a6dbf", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7252 + }, + { + "path": "src/framework/components/datasets/crc_dataset.py", + "sha256": "b7d493456af325f1d4779f5dc78ce88b59eb14896e5638ceec8249b86d2f338d", + "language": "Python", + "lines": 157, + "truncated": false, + "block": 9, + "row": 9776 + }, + { + "path": "src/framework/components/datasets/kidney_dataset.py", + "sha256": "41fe15d50c6cb9ba18e0c6d8b62d966b213ed6a16c977549b87ddf6906f369a4", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 9859 + }, + { + "path": "src/framework/components/datasets/mock_dataset.py", + "sha256": "7b103cf7a98d4199e79550500fe451f6376be47d92814a68db47e54d3b2b4435", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 9, + "row": 9014 + }, + { + "path": "src/framework/components/methods/ch5_methods.py", + "sha256": "a55b0a540f31f9d75e904cec7baab2a697927313869e70fdc037161262ee3ffd", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7247 + }, + { + "path": "src/framework/components/methods/graphsgan_method.py", + "sha256": "762a3369deb7e5cc7a9720b391f733d6919d399db1953548e213e968a7bbf4bc", + "language": "Python", + "lines": 195, + "truncated": false, + "block": 9, + "row": 10061 + }, + { + "path": "src/framework/components/methods/sklearn_methods.py", + "sha256": "3c2aa9abeccc90d00f2aea4c9d74094a9babf8fa26eb9ce715fa2582f5c0fbd6", + "language": "Python", + "lines": 344, + "truncated": false, + "block": 9, + "row": 11400 + }, + { + "path": "src/framework/components/models/gcn.py", + "sha256": "1d5feb351de327b4e7f19e93c351f0cd41de511a6a2fe15cf466f383ca33074e", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 9, + "row": 10983 + }, + { + "path": "src/framework/components/models/gct_model.py", + "sha256": "3e143b5f61d48a240de2f8a3dfce7759abd49ac0a3424c1a23f3ce7e1714dbb7", + "language": "Python", + "lines": 166, + "truncated": false, + "block": 9, + "row": 9959 + }, + { + "path": "src/framework/core/__init__.py", + "sha256": "8ed0861cfeea913f21d77e6a10b5d6a2cff81cca7a39cbfb6d609fd0624fc5a9", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6445 + }, + { + "path": "src/framework/core/config.py", + "sha256": "4c91362b8bad75bdee1ec70247fe8208b3b3d1ee460b0f8a00ca69229ddba725", + "language": "Python", + "lines": 199, + "truncated": false, + "block": 9, + "row": 10189 + }, + { + "path": "src/framework/core/data.py", + "sha256": "21a7916b37f345870a81be8d5420d31280700f4b4dbec366b2dcaeb45ae147ea", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 9, + "row": 10370 + }, + { + "path": "src/framework/core/registry.py", + "sha256": "6729cbd576efc17670f3a8f25cddea6d6c07c42ade274d4bca96bd7930acb926", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 9, + "row": 9288 + }, + { + "path": "src/framework/engine/__init__.py", + "sha256": "e43125b411bc49515dfe7602396f5f502df96e4bfabcf4cc39ca1e79333d0a77", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 7066 + }, + { + "path": "src/framework/engine/attention_viz.py", + "sha256": "2bfb35ea52ab5b139df2ae703ac7f55616b194ca54377aabeb585657f4e36023", + "language": "Python", + "lines": 209, + "truncated": false, + "block": 9, + "row": 10397 + }, + { + "path": "src/framework/engine/batch.py", + "sha256": "32e9db771839e2edce5ddcf3e6fe7192be55a61915ac977a7971cb585078e95b", + "language": "Python", + "lines": 239, + "truncated": false, + "block": 9, + "row": 10655 + }, + { + "path": "src/framework/engine/cache.py", + "sha256": "113136b8647689902f920c7df961068fa42bfabbd0220009c68d1d1af5343524", + "language": "Python", + "lines": 166, + "truncated": false, + "block": 9, + "row": 9596 + }, + { + "path": "src/framework/engine/callbacks.py", + "sha256": "3c17bec542f703c0ef627e10dadd61216be8e3dc56108106299982180f792c3c", + "language": "Python", + "lines": 219, + "truncated": false, + "block": 9, + "row": 10580 + }, + { + "path": "src/framework/engine/collector.py", + "sha256": "da44548462fd7005807591996ea4f6d93c8812e986aff234932b0318216170e8", + "language": "Python", + "lines": 335, + "truncated": false, + "block": 9, + "row": 11291 + }, + { + "path": "src/framework/engine/cutoff.py", + "sha256": "0faa01ca2eebc4881d7a356b55cd8686d34882bc1654181fb5132ba4c8c1c304", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 9, + "row": 10009 + }, + { + "path": "src/framework/engine/evaluation.py", + "sha256": "fa80f1e82f0de0f7f5b8f37d806af5782e015010d4a655491fe939f2433f0e3b", + "language": "Python", + "lines": 314, + "truncated": false, + "block": 9, + "row": 11009 + }, + { + "path": "src/framework/engine/logger.py", + "sha256": "f918c54f6fe215e1380b2258376cf2fb5219f86f3ed76d83d50a2c846484265d", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 9, + "row": 10113 + }, + { + "path": "src/framework/engine/model_cache.py", + "sha256": "0d6a8f39bd2dc02f13d981c6a246961d59365b54ae544365e54f0662d5ea8d45", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 9, + "row": 8930 + }, + { + "path": "src/framework/engine/running_stats.py", + "sha256": "caf5a0e4393999b3288b6c619a5eaf25440e45f171ed75ef9f08212b7eaf7f72", + "language": "Python", + "lines": 298, + "truncated": false, + "block": 9, + "row": 10997 + }, + { + "path": "src/framework/engine/stats.py", + "sha256": "f21d992e54e8d2b70e96e7cd99b1026020158ab1bdddb4959f3465dc7748dcda", + "language": "Python", + "lines": 220, + "truncated": false, + "block": 9, + "row": 10350 + }, + { + "path": "src/framework/engine/sweep.py", + "sha256": "70ec523b87e9bd98e3aee3d334c6f539062d23a5d50e5c04c7537902594e80ad", + "language": "Python", + "lines": 254, + "truncated": false, + "block": 9, + "row": 10773 + }, + { + "path": "src/framework/engine/trainer.py", + "sha256": "0640fa543ac2cc6bfdc1f363235c2a7c26332ac915c315f62fddc2b8db3c2de0", + "language": "Python", + "lines": 329, + "truncated": false, + "block": 9, + "row": 11283 + }, + { + "path": "src/framework/pipeline.py", + "sha256": "04494f9c4715f0353b6bda73a1ad55ff17beeff286364791affb3c5a0ad27ebb", + "language": "Python", + "lines": 238, + "truncated": false, + "block": 9, + "row": 10767 + }, + { + "path": "src/framework/vendor/p1_graphsgan/calibration.py", + "sha256": "dbf1cb77e3c5a571ddbfce0b8dc9c32be98c789aa7e43d8dac9cbdd5b327fa87", + "language": "Python", + "lines": 233, + "truncated": false, + "block": 9, + "row": 10434 + }, + { + "path": "src/framework/vendor/p1_graphsgan/compat.py", + "sha256": "507bcd8ba4991d3f6f4163ec444f5828ca40c1e52adf431873fdbd93829fa781", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 9, + "row": 8888 + }, + { + "path": "src/framework/vendor/p1_graphsgan/config.py", + "sha256": "c84dc30811d1ebe78e8834acc9f6dbb288b0dab659879da1a17825b0f41138a4", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 7902 + }, + { + "path": "src/framework/vendor/p1_graphsgan/dataset.py", + "sha256": "6b20fef5288e5abe0302890fcbb2ed3a5dd9470f5e47cd2cc455bca444ebec96", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 9, + "row": 10308 + }, + { + "path": "src/framework/vendor/p1_graphsgan/embedding.py", + "sha256": "a3ed1bd369ccdf00de179bcd94b071a03d85784da8fe4d877636500e160335d0", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 9, + "row": 9682 + }, + { + "path": "src/framework/vendor/p1_graphsgan/evaluate.py", + "sha256": "e1d06337a9ce0888af148ab2362d922911c7e56d6f8878f8858bc5af153bf194", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 7922 + }, + { + "path": "src/framework/vendor/p1_graphsgan/feature_transformer.py", + "sha256": "542cea629eb6187812776982c4fc82f8c320506224c69d528d4bcc781d37b8ec", + "language": "Python", + "lines": 297, + "truncated": false, + "block": 9, + "row": 11066 + }, + { + "path": "src/framework/vendor/p1_graphsgan/fidelity.py", + "sha256": "e7d653fbc7d523f6cabba555abbb7b222dc913bee26eb47a8905a9c36f69bb46", + "language": "Python", + "lines": 1093, + "truncated": false, + "block": 9, + "row": 12403 + }, + { + "path": "src/framework/vendor/p1_graphsgan/functional.py", + "sha256": "34acd2f59abd2e144153126c6d6f82dc64577d801b0c2e811d1d140f336ea99d", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 7823 + }, + { + "path": "src/framework/vendor/p1_graphsgan/graph_builder.py", + "sha256": "f9e8101ddac44e7adf634320b2a0fad9fb38a9b4512b3a026f81ee88c4d7add7", + "language": "Python", + "lines": 243, + "truncated": false, + "block": 9, + "row": 10286 + }, + { + "path": "src/framework/vendor/p1_graphsgan/graphsgan.py", + "sha256": "6502cad1d8b7b756fa96b8a673de8b43a3fec9f5aca83c0a7443cc729712980a", + "language": "Python", + "lines": 517, + "truncated": false, + "block": 9, + "row": 11746 + }, + { + "path": "src/framework/vendor/p1_graphsgan/metrics_logger.py", + "sha256": "4aab82b78032fcee809296fd67b53599f1e100c80ed49e29f6d76daa8a06db48", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 9, + "row": 9860 + }, + { + "path": "src/framework/vendor/p1_graphsgan/nets.py", + "sha256": "99badecf36c3a777e85e7e05995817a5f44db9a90be640565a4a10c1ce1cadbc", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 9, + "row": 9393 + }, + { + "path": "src/framework/vendor/p1_graphsgan/pipeline.py", + "sha256": "b602d8316500790b1b7919218dcbc841392a9a26de2796fd609195842811dda3", + "language": "Python", + "lines": 255, + "truncated": false, + "block": 9, + "row": 10540 + }, + { + "path": "src/framework/vendor/p1_graphsgan/preprocessing.py", + "sha256": "718c200eab2389b2cf8d196a4e8b36403d5babd4f21baf2f05253dbda0eff36f", + "language": "Python", + "lines": 514, + "truncated": false, + "block": 9, + "row": 11776 + }, + { + "path": "src/framework/vendor/p1_graphsgan/visualize.py", + "sha256": "bba67a34a9e235eed5e20438046a902316d5ec4188527e6b6d06255dc20ddc94", + "language": "Python", + "lines": 319, + "truncated": false, + "block": 9, + "row": 10669 + }, + { + "path": "src/framework/vendor/p2_gct/__init__.py", + "sha256": "01ba4719c80b6fe911b091a7c05124b64eeece964e09c058ef8f9805daca546b", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4956 + }, + { + "path": "src/framework/vendor/p2_gct/dataset.py", + "sha256": "b0310e620574c2a723e15c5c4d877c90e2f4cbd5f637e919c8ed031fbd10a2cf", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 9, + "row": 9325 + }, + { + "path": "src/framework/vendor/p2_gct/feature_transformer.py", + "sha256": "7927366e25a5a6040fd171a32447e5760121d56c5506dca92b1401e0b1f2d521", + "language": "Python", + "lines": 294, + "truncated": false, + "block": 9, + "row": 11029 + }, + { + "path": "src/framework/vendor/p2_gct/gct_adapter.py", + "sha256": "ac280b9b39b3476607db769c4e8fc5a70c5cfba073d1bc91f747a4db911e03d9", + "language": "Python", + "lines": 193, + "truncated": false, + "block": 9, + "row": 10249 + }, + { + "path": "src/framework/vendor/p2_gct/gct_model.py", + "sha256": "734a9f03263cf5b1dc8ab6595da3bf164054c08c94e6858a48e33e32456e03a7", + "language": "Python", + "lines": 315, + "truncated": false, + "block": 9, + "row": 11136 + }, + { + "path": "src/framework/vendor/p2_gct/preprocessing.py", + "sha256": "6987245dbef81cad1aec7ab298023a3ad24f562da3343ec3f9d0eb3ee2069da2", + "language": "Python", + "lines": 450, + "truncated": false, + "block": 9, + "row": 11681 + }, + { + "path": "src/meta/__init__.py", + "sha256": "14ed27c316fefa423645c1638c6a7b2db96b576a5808cfd2849193678e52c12b", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 9, + "row": 6605 + }, + { + "path": "src/meta/cascade.py", + "sha256": "2362ae9b78b6713564feab5f6c804d0b211a7e4b58e0dde07facd56bcb5b8b5e", + "language": "Python", + "lines": 429, + "truncated": false, + "block": 9, + "row": 11486 + }, + { + "path": "src/meta/knowledge_store.py", + "sha256": "725f194d0f52133905cd5bb9f29016d44425666ad23300c0790290c9973e5e46", + "language": "Python", + "lines": 316, + "truncated": false, + "block": 9, + "row": 11211 + }, + { + "path": "src/meta/lodo_cv.py", + "sha256": "1a34df002f3489ea69aff83daea32e1b0d57614983a70825587fead2193c21a9", + "language": "Python", + "lines": 1296, + "truncated": false, + "block": 9, + "row": 12515 + }, + { + "path": "src/meta/modular_recommender.py", + "sha256": "a73263ce8611945536211c4eb6a6d53ce35da73f9deac5fa810db305f479f547", + "language": "Python", + "lines": 500, + "truncated": false, + "block": 9, + "row": 11769 + }, + { + "path": "src/meta/recommender.py", + "sha256": "145bfb053ac66d99a78fb5bc1647449e2f93694c2a897eb1d5a9dcadc0b46017", + "language": "Python", + "lines": 321, + "truncated": false, + "block": 9, + "row": 11180 + }, + { + "path": "src/meta/scorer.py", + "sha256": "f88da720f0088e095e3be4eeb6baf14fa1ece47e6700be313cf0d0a81e7dd0c1", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 9, + "row": 9569 + }, + { + "path": "src/methods/__init__.py", + "sha256": "e04f65efc6638076bd39b7ecab7b96f3fc903a3e27eedf0a229e422b80d85e63", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8925 + }, + { + "path": "src/methods/combined.py", + "sha256": "3135f9f687938d9a5f8d8fd76aa0196f56cf33047b59e6bc6ada8d846f82438c", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9365 + }, + { + "path": "src/methods/dae_xgb.py", + "sha256": "49ce111d7fc72337d121f0023c3c50c65ca85c1e92df516b964bab35a179d9cd", + "language": "Python", + "lines": 248, + "truncated": false, + "block": 9, + "row": 10482 + }, + { + "path": "src/methods/feat_prop.py", + "sha256": "23804233f7c6475f6649aee9ab216523655ee38f707ad11a813c815d2d936882", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 9, + "row": 10103 + }, + { + "path": "src/methods/ft_transformer.py", + "sha256": "5fa9d14a4790173216c0aa003a9ad78375b804e09d118da18ae7770f7bcbe47a", + "language": "Python", + "lines": 195, + "truncated": false, + "block": 9, + "row": 10447 + }, + { + "path": "src/methods/gain_xgb.py", + "sha256": "ed5714ba4198565f6898d2d9a0b34f1533319d67f1a126dc4755d2797f4ec333", + "language": "Python", + "lines": 266, + "truncated": false, + "block": 9, + "row": 10647 + }, + { + "path": "src/methods/grape.py", + "sha256": "4f51ac919df02cd89be4f67b207cf0f123e5724a015fbed357900e59bab0ae7c", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 9, + "row": 10612 + }, + { + "path": "src/methods/graphsgan.py", + "sha256": "e6d26850661389c776b77bdb656dadf531fca481698197d3051b5aa8b195382f", + "language": "Python", + "lines": 288, + "truncated": false, + "block": 9, + "row": 11105 + }, + { + "path": "src/methods/knn_imp_xgb.py", + "sha256": "bcfc72729761daaaf356cbe78eb6603acd66998e980465018cdbc589acf0ed88", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 8744 + }, + { + "path": "src/methods/mean_lr.py", + "sha256": "7f43d9814f1dc08afd8df25214daa0d102a7a56468e28950fe36b97f2706d03f", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 8666 + }, + { + "path": "src/methods/mean_xgb.py", + "sha256": "b1a892e5e47aba3bf43b0989311898f52caef0406dc944d508d1d26df48c744f", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 8425 + }, + { + "path": "src/methods/mice_xgb.py", + "sha256": "0b97efb1731ed7a74dd34b0db8a86c747e2e769b5dfecf2679805a87be51a1c7", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 9, + "row": 9130 + }, + { + "path": "src/methods/missforest_xgb.py", + "sha256": "5e069b4dc82867832e4671d4a91d2b84fa1e6056b9c60170b15635242f81f837", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9362 + }, + { + "path": "src/methods/missing_gct.py", + "sha256": "bdc4722f11792de5c6b25a772ef935b4d0b6b98a17b2a680265c230abd8a8e31", + "language": "Python", + "lines": 393, + "truncated": false, + "block": 9, + "row": 11521 + }, + { + "path": "src/methods/modern_gnns.py", + "sha256": "01276229be4e4a224f9bcca68703b77ccd78e05e9769d0ee4777c7365c36ba25", + "language": "Python", + "lines": 585, + "truncated": false, + "block": 9, + "row": 11899 + }, + { + "path": "src/methods/registry.py", + "sha256": "b2173e192f9b5b1d5bbb18ecb09dc59018e14876a9a45e28a94bbb37c303d1f5", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 9, + "row": 9938 + }, + { + "path": "src/methods/saits_xgb.py", + "sha256": "bc42a45e563c350f7c6d4a209768749717a844a31f4193f7694b0a6bf01ba984", + "language": "Python", + "lines": 328, + "truncated": false, + "block": 9, + "row": 11095 + }, + { + "path": "src/methods/softimpute_xgb.py", + "sha256": "541ef3452486f4164bcaa463fc6f31439390ff124f84cc36bed8431b02308adf", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 9, + "row": 10177 + }, + { + "path": "src/methods/xgb_native.py", + "sha256": "12729cd395c49c291345d5629d0274fcbd2c895161bca6467bc144dd9f61ae15", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 8220 + }, + { + "path": "src/sweep/__init__.py", + "sha256": "70cae085ed6ce9efbd5c42bad78106f9c41160b24ba0e35bdf9a27f9a0121557", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 9, + "row": 6526 + }, + { + "path": "src/sweep/engine.py", + "sha256": "2f4ef88785844e381146cea13fa767047abb943fffb2bc78ec6f3ea79aff0c49", + "language": "Python", + "lines": 468, + "truncated": false, + "block": 9, + "row": 11712 + }, + { + "path": "src/sweep/surface.py", + "sha256": "7d0cf557b9fc36bc1ec70d2ff7d7775bbc2df7c271d6ca059fa6ef6de4461124", + "language": "Python", + "lines": 219, + "truncated": false, + "block": 9, + "row": 10263 + }, + { + "path": "src/viz/__init__.py", + "sha256": "862d77ee98dd8e39ea9c464d7d972c886e6e4386554ce3a89085a91ef05e93c9", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7178 + }, + { + "path": "src/viz/curves.py", + "sha256": "f8fe6b8c7d5a6ed98be720323d40487064706e32f115a668b7a017be6a866e65", + "language": "Python", + "lines": 527, + "truncated": false, + "block": 9, + "row": 11729 + }, + { + "path": "src/viz/fahzu_viz.py", + "sha256": "33a992e74f3bd81db0cb9ca052c2142722c3c5dc54a9d38197549f476a42e794", + "language": "Python", + "lines": 382, + "truncated": false, + "block": 9, + "row": 11411 + }, + { + "path": "src/viz/heatmap.py", + "sha256": "cc3eaeaf2e49719c1375e429228d3a9a014c9a6595e43914e4fa845549081677", + "language": "Python", + "lines": 471, + "truncated": false, + "block": 9, + "row": 11740 + }, + { + "path": "src/viz/lodo_results.py", + "sha256": "a1b7631aea87162da406c518f4bfc9cbab11338adc7328608d3828c7093d4fc6", + "language": "Python", + "lines": 388, + "truncated": false, + "block": 9, + "row": 11357 + }, + { + "path": "src/viz/mdpi_style.py", + "sha256": "f2fc5bb436527222b42b99ce625a72d19b7f44e9e0235a36fcfe5488b846ced0", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 8693 + }, + { + "path": "src/viz/pareto.py", + "sha256": "684b81762144efed7e0aaba91985154600fcafe8cc3bc1832f2a047de6b31303", + "language": "Python", + "lines": 163, + "truncated": false, + "block": 9, + "row": 9647 + }, + { + "path": "src/viz/regime.py", + "sha256": "302bdf89d51c3802121f2fa54ea89aa97d7f83d6efb6abcfa4315a43dd0783c8", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 9848 + }, + { + "path": "src/viz/tsne_fingerprint.py", + "sha256": "890dbab84c656f358e4cd2a80fd169fb121e5f6d8a926fd54f53538413e3aa04", + "language": "Python", + "lines": 669, + "truncated": false, + "block": 9, + "row": 12114 + } + ] +} \ No newline at end of file diff --git a/manifests/63/zenodo__19110086.json b/manifests/63/zenodo__19110086.json new file mode 100644 index 0000000000000000000000000000000000000000..caf7868de34ed77fb3116ffb9b2042b0b904b654 --- /dev/null +++ b/manifests/63/zenodo__19110086.json @@ -0,0 +1,894 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19110086", + "url": "https://doi.org/10.5281/zenodo.19110086", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file ethopy_control-main.zip/LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "ethopy_analysis-main.zip/LICENSE", + "sha256": "58817164eb1caedd1af8a72c2ecb1ac6fd783e253f2819222fd2eea2be70c601", + "language": "License", + "lines": 22, + "truncated": false, + "block": 9, + "row": 2822 + }, + { + "path": "ethopy_analysis-main.zip/README.md", + "sha256": "db765d8434d7e18139cb6692afc457cb79dab9da117c9715c6ef62a4da2a391c", + "language": "Text", + "lines": 131, + "truncated": false, + "block": 9, + "row": 14658 + }, + { + "path": "ethopy_analysis-main.zip/examples/animal_analysis_example.ipynb", + "sha256": "b2ab30efcd02f1d81bb0925fd855832d1c1daceaa71b5146f214fa880487e841", + "language": "Jupyter", + "lines": 59, + "truncated": false, + "block": 9, + "row": 2243 + }, + { + "path": "ethopy_analysis-main.zip/examples/load_example.ipynb", + "sha256": "5cc2f5af8e3cea41b33d1a761c4aebc56fcac4c01213d5270b65fe64745af1ae", + "language": "Jupyter", + "lines": 381, + "truncated": false, + "block": 9, + "row": 2568 + }, + { + "path": "ethopy_analysis-main.zip/examples/session_analysis_example.ipynb", + "sha256": "281e518d37e31d8b97d43ad3d109b0f63b631e5ab32953433bb4b973c1fb1be9", + "language": "Jupyter", + "lines": 325, + "truncated": false, + "block": 9, + "row": 2534 + }, + { + "path": "ethopy_analysis-main.zip/src/ethopy_analysis/__init__.py", + "sha256": "33ced16350e3a0fa38bbed8dd614b5fd2c6a1a14e42a87dabc35c66f0109f04d", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 7976 + }, + { + "path": "ethopy_analysis-main.zip/src/ethopy_analysis/cli.py", + "sha256": "3d7837cfa01d8255f004de44c3ab3375fbec48f1367fcfd00b29c63ecc8cb3e9", + "language": "Python", + "lines": 313, + "truncated": false, + "block": 9, + "row": 10841 + }, + { + "path": "ethopy_analysis-main.zip/src/ethopy_analysis/config/__init__.py", + "sha256": "b6fa2c40f422921c9624ccda01701bdaeebe33dc811af9b5ee89fa118772530c", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6687 + }, + { + "path": "ethopy_analysis-main.zip/src/ethopy_analysis/config/interactive.py", + "sha256": "d83584de3047a5e604dd904a67253a3b92e7a3a5dcd5ed7deaf09dc0e00f3eaf", + "language": "Python", + "lines": 243, + "truncated": false, + "block": 9, + "row": 10445 + }, + { + "path": "ethopy_analysis-main.zip/src/ethopy_analysis/config/settings.py", + "sha256": "d1c09ecff44979832d4954541237d1032b3524548c16f1d325818a64995b7546", + "language": "Python", + "lines": 401, + "truncated": false, + "block": 9, + "row": 11181 + }, + { + "path": "ethopy_analysis-main.zip/src/ethopy_analysis/config/styles.py", + "sha256": "032293e25d1a66669ba16534f34060fd9762034596780c9702a2d8480f067d9c", + "language": "Python", + "lines": 173, + "truncated": false, + "block": 9, + "row": 9491 + }, + { + "path": "ethopy_analysis-main.zip/src/ethopy_analysis/data/__init__.py", + "sha256": "774df9434af816f70bea8b8d716208795157a4c2991eeb6e54182b0957f20f26", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 7999 + }, + { + "path": "ethopy_analysis-main.zip/src/ethopy_analysis/data/analysis.py", + "sha256": "815e18147929a4b3f51fda722e2ae713b65a6332c8c4c45ead6ecd59bc78f653", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 9, + "row": 10111 + }, + { + "path": "ethopy_analysis-main.zip/src/ethopy_analysis/data/loaders.py", + "sha256": "f5a6f660d1ef832beef4ef632d306819a41e50bca75b14fecc931d33806f4b50", + "language": "Python", + "lines": 990, + "truncated": false, + "block": 9, + "row": 12336 + }, + { + "path": "ethopy_analysis-main.zip/src/ethopy_analysis/data/utils.py", + "sha256": "52cb4fa76737ecd6be78d1bcf124317131c35b7874f991e23675f16ebf1574ca", + "language": "Python", + "lines": 320, + "truncated": false, + "block": 9, + "row": 10933 + }, + { + "path": "ethopy_analysis-main.zip/src/ethopy_analysis/db/schemas.py", + "sha256": "f80aad6c184b17173b9e29f9770b617a157b3c7cc2bf7c95e04172f87185cf54", + "language": "Python", + "lines": 387, + "truncated": false, + "block": 9, + "row": 11183 + }, + { + "path": "ethopy_analysis-main.zip/src/ethopy_analysis/plots/__init__.py", + "sha256": "b79785b4cb5a3cc3d30d3a4e62e94db905048b63544ecbcee058b47fec189a84", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7364 + }, + { + "path": "ethopy_analysis-main.zip/src/ethopy_analysis/plots/animal.py", + "sha256": "310db78e85906b6fe8598c994831915d5ecff9157c7eb623e8bba0ee4accd0a5", + "language": "Python", + "lines": 266, + "truncated": false, + "block": 9, + "row": 10695 + }, + { + "path": "ethopy_analysis-main.zip/src/ethopy_analysis/plots/comparison.py", + "sha256": "d89e8e3a3852920257a593b5ccf75bb6ca42ece2bbfd7518758231d60776cd3d", + "language": "Python", + "lines": 550, + "truncated": false, + "block": 9, + "row": 11765 + }, + { + "path": "ethopy_analysis-main.zip/src/ethopy_analysis/plots/session.py", + "sha256": "4067eccd24f61984d9ecefb3d2b13b14f09d235a9fde8b798748dc4cbd12ab9b", + "language": "Python", + "lines": 1338, + "truncated": false, + "block": 9, + "row": 12473 + }, + { + "path": "ethopy_analysis-main.zip/src/ethopy_analysis/plots/utils.py", + "sha256": "e30ca7c0ad66d07afccd4e50142d273a612dd3157c41f9701280977faaf2c24a", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 9, + "row": 9335 + }, + { + "path": "ethopy_control-main.zip/LICENSE", + "sha256": "663ee3982388616f463b4e5b3202ccd28cedb994ff34a1f8338410bcda7eae0a", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2809 + }, + { + "path": "ethopy_control-main.zip/README.md", + "sha256": "45c1708495c1b500b2748fd6cbe61f70a070a94f176fe243b26b022bb3827f34", + "language": "Text", + "lines": 216, + "truncated": false, + "block": 9, + "row": 14683 + }, + { + "path": "ethopy_control-main.zip/app.py", + "sha256": "d2601ee6bbf9806061549ff8250e2ca0025e99f58cc043f4557ef606264624bd", + "language": "Python", + "lines": 792, + "truncated": false, + "block": 9, + "row": 12116 + }, + { + "path": "ethopy_control-main.zip/app_setup.py", + "sha256": "258b64a619a06d5277b5a63f0186cf6c8fe3803286d405d802e32bdc8c9f7965", + "language": "Python", + "lines": 493, + "truncated": false, + "block": 9, + "row": 11606 + }, + { + "path": "ethopy_control-main.zip/main.py", + "sha256": "47541e93797ab70c636223a5e8b27db5101367cd737f459612906ea3968576ca", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7300 + }, + { + "path": "ethopy_control-main.zip/models.py", + "sha256": "a643ab17919f3775096960c6ef664f04cf41985054ea1c562e40451890b21455", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 8167 + }, + { + "path": "ethopy_control-main.zip/real_time_plot/get_activity.py", + "sha256": "62c716d10ba995e95a12638547559665544edced9984c37e5f3ceca2a7a0299e", + "language": "Python", + "lines": 777, + "truncated": false, + "block": 9, + "row": 12078 + }, + { + "path": "ethopy_control-main.zip/real_time_plot/real_time_events.py", + "sha256": "a1c1df9933701f34c532141c32edcb312a292a316419c60ce4f690ed4dae6122", + "language": "Python", + "lines": 941, + "truncated": false, + "block": 9, + "row": 12283 + }, + { + "path": "ethopy_control-main.zip/static/js/table.js", + "sha256": "f630c711a00d0a8356cc4effa987c78328335bf4018b915df4a1cfd6b83fe7a2", + "language": "JavaScript", + "lines": 768, + "truncated": false, + "block": 9, + "row": 2114 + }, + { + "path": "ethopy_control-main.zip/tests/conftest.py", + "sha256": "4a5514565b8857ffee32c3ce3ce0c6e0761101f440e7f261d3068227b27c1089", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 7542 + }, + { + "path": "ethopy_control-main.zip/tests/test_api.py", + "sha256": "ad39d74231a2f4353e8d224c63c863b77592cbe8b0254d08084a265dc15aa375", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 9, + "row": 9880 + }, + { + "path": "ethopy_control-main.zip/tests/test_models.py", + "sha256": "eeab667eaf0f7f4de904291946de3454553c80d9cd9ea7d20c2c6554eac9a0f4", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7462 + }, + { + "path": "ethopy_control-main.zip/utils/__init__.py", + "sha256": "9f9f6da1acb41ec478c6770a11c1943f79fcaa67e76b91192bb54a87f65db897", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6368 + }, + { + "path": "ethopy_control-main.zip/utils/config.py", + "sha256": "bf26545bbf7783f9e7116b83c33a8b8bf9f96a7386d61e6a3d24339644722ac4", + "language": "Python", + "lines": 178, + "truncated": false, + "block": 9, + "row": 9814 + }, + { + "path": "ethopy_control-main.zip/utils/init_db.py", + "sha256": "c13d086812780deb5164f4c2e527baf57bf20b0507437fbbfb07c04f66e354b0", + "language": "Python", + "lines": 306, + "truncated": false, + "block": 9, + "row": 10999 + }, + { + "path": "ethopy_control-main.zip/utils/setup_env.py", + "sha256": "a20ad0057fb9adca476ccf9ee68454826d00dfddc0483a81723b2f11972987cd", + "language": "Python", + "lines": 199, + "truncated": false, + "block": 9, + "row": 9801 + }, + { + "path": "ethopy_hardware-main.zip/LICENSE", + "sha256": "580963b4d05914efd1f69b997b62882c7e558b2c8fc3b8711fc8e0744c2cd1fa", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2821 + }, + { + "path": "ethopy_hardware-main.zip/README.md", + "sha256": "f1e2d96fb09044f6fe5cbf07cad24ff7294b061eafbfb3eb3577526859e036b1", + "language": "Text", + "lines": 46, + "truncated": false, + "block": 9, + "row": 14501 + }, + { + "path": "ethopy_package-main.zip/LICENSE", + "sha256": "58817164eb1caedd1af8a72c2ecb1ac6fd783e253f2819222fd2eea2be70c601", + "language": "License", + "lines": 22, + "truncated": false, + "block": 9, + "row": 2822 + }, + { + "path": "ethopy_package-main.zip/README.md", + "sha256": "b50a86e449ed94971ccbcc0d1b32c4356a4c6cfb886195c23fee448fe8b704fe", + "language": "Text", + "lines": 96, + "truncated": false, + "block": 9, + "row": 14622 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/__init__.py", + "sha256": "83b43d53d511d178abc44c105583f9319719fbe1b2522f3526479e872a8ba430", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7488 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/behaviors/__init__.py", + "sha256": "5af6336a3bb2d60fb80542b4822830763d4b643cd841e94ee701c8a7a6289171", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6405 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/behaviors/head_fixed.py", + "sha256": "d86689179ed7720bcb331db9a6f50cd046bccef49089835cb6202a6794f473bc", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 9, + "row": 6547 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/behaviors/multi_port.py", + "sha256": "5ecb844f0c9fb56af1b587fb5e2756f346da95ea3bbb67f005f82f73aac954ae", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 8795 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/cli.py", + "sha256": "47ed417cadc6a133f7e405ad16d471bd165b9669c03910a108c0a6a41f5a0f92", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8051 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/config.py", + "sha256": "094a86cb0fda1744782039290d21ca30a58b24ceac2c395734cab96187d233d9", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 9, + "row": 10435 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/core/__init__.py", + "sha256": "18e1b69292f534e4851c409322aa4b0a71eefd4742f2f94166c9eaeb14904615", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6102 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/core/behavior.py", + "sha256": "4004c61d7c1fbf8fec4799da2b6213434be5d1c3ab69d663621abe076bc1630e", + "language": "Python", + "lines": 484, + "truncated": false, + "block": 9, + "row": 11664 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/core/experiment.py", + "sha256": "de875cfe5d36c75980523edca1a5c47b5e8f44077c6b5c894f2c5e6985277590", + "language": "Python", + "lines": 1126, + "truncated": false, + "block": 9, + "row": 12434 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/core/interface.py", + "sha256": "24711ef45b10aba5ba09c04bb8c0b033415ced11ebd82453c802a4b44323e88d", + "language": "Python", + "lines": 556, + "truncated": false, + "block": 9, + "row": 11751 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/core/logger.py", + "sha256": "37882062ecb25db45071359d83fb7c103c15b2b6751ebb0b737fb51768f866af", + "language": "Python", + "lines": 1067, + "truncated": false, + "block": 9, + "row": 12419 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/core/recordings.py", + "sha256": "3b45891090cc0f0835c4aa58ef92f107af400c57b882e7558fec753cc7b8ca92", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7017 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/core/stimulus.py", + "sha256": "5cbd9ad7d5455f32ff1547efa1ca69de0ebcb625d28e41bd653ab0d77de1ba45", + "language": "Python", + "lines": 242, + "truncated": false, + "block": 9, + "row": 10479 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/experiments/__init__.py", + "sha256": "5af6336a3bb2d60fb80542b4822830763d4b643cd841e94ee701c8a7a6289171", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6405 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/experiments/calibrate.py", + "sha256": "ac16ae330ab13a5585a9bd7513f02b873a7ef32b134641ad97aa52c091e723ff", + "language": "Python", + "lines": 444, + "truncated": false, + "block": 9, + "row": 11460 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/experiments/free_water.py", + "sha256": "79b27be8266308429457fa2f09e0c194f1db6529b85ee04079eab67189f70324", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 9, + "row": 9039 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/experiments/match_port.py", + "sha256": "4d5f707ef78f996ac6496f845b018b0f0e14c4ead3c63fca23bf93f5e17eab92", + "language": "Python", + "lines": 287, + "truncated": false, + "block": 9, + "row": 10483 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/experiments/passive.py", + "sha256": "3ac605124a7e5241d2f0815d2082a51fd206ca75b82fe4a4e7d8e9e8ac96cdcb", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8061 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/interfaces/Arduino.py", + "sha256": "ea956649e86c1ffc5b76dbf24b609512cbec0af2878546fd71a9d0f16963d26b", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 9, + "row": 10234 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/interfaces/Ball.py", + "sha256": "31ea048bdb2f2e033d0789111e163e530ca1f74b6e05894b56e1d458ff2687fb", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 9455 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/interfaces/Camera.py", + "sha256": "3fb3bd221f4ce0e890bfff33edec6ead5a38b4f149fcc24b68f469570fe54871", + "language": "Python", + "lines": 892, + "truncated": false, + "block": 9, + "row": 12241 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/interfaces/DummyPorts.py", + "sha256": "58c59ef3aeb6c8a76c6315e20587ad9c5c8789fc578a8123724c12208d9f9691", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 9045 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/interfaces/PCPorts.py", + "sha256": "b459a3f33c6f17849263080820fe51974921a0e707e2b84844a9f266ec6fee5d", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7124 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/interfaces/RPPorts.py", + "sha256": "39bc84349fd3404246c521d104bea76c66c0bc137112a383fc8a1bdd313fd9cf", + "language": "Python", + "lines": 319, + "truncated": false, + "block": 9, + "row": 11449 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/interfaces/RPVR.py", + "sha256": "746790b82e1c827dbc998859c5cc4fcabc9c99f6f6ab633c2c347cef09bda720", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7419 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/interfaces/__init__.py", + "sha256": "5af6336a3bb2d60fb80542b4822830763d4b643cd841e94ee701c8a7a6289171", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6405 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/interfaces/dlc.py", + "sha256": "63ad3dd9539ae2a104a48b480ce83f7406dc5f448dc27b9d83843b9205450a7f", + "language": "Python", + "lines": 547, + "truncated": false, + "block": 9, + "row": 11873 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/plugin_manager.py", + "sha256": "45f2a5994ab7f43619d79ea852c1b2eae1a6baabcc9ccc6a17790c017b3e0a2f", + "language": "Python", + "lines": 318, + "truncated": false, + "block": 9, + "row": 11028 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/run.py", + "sha256": "be1e0aef4d3d4dfb1325a4b759ec688ba4f3efb13c29d86f1296f5dcecdcd847", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 7694 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/setup_db.py", + "sha256": "2273397067ed13b555121a16a76cbde3667ac8cb5f06532438bc9c9686e93461", + "language": "Python", + "lines": 304, + "truncated": false, + "block": 9, + "row": 10778 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/stimuli/__init__.py", + "sha256": "5af6336a3bb2d60fb80542b4822830763d4b643cd841e94ee701c8a7a6289171", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6405 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/stimuli/bar.py", + "sha256": "6c5115f5f64a3f591195e60c515f3781dd13cdbec6cb7a104c32d3b6d2269cf2", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 9750 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/stimuli/dot.py", + "sha256": "6f985c90500dc5fbaf272a489cef8823a82c9bac3251efd7707326503bd07fed", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 8208 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/stimuli/grating.py", + "sha256": "597d037e3b26a177a9b21df5c837a7a31a43f0c19a02559497b1f85b05378f9a", + "language": "Python", + "lines": 242, + "truncated": false, + "block": 9, + "row": 10674 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/task/bar_test.py", + "sha256": "264c7a81b0d3eb9d6a0485c78b275614b8452b1159fa4d6d7e07ac7fb0168625", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 9, + "row": 7198 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/task/calibrate_ports.py", + "sha256": "193706ab76796ba01865e2bc086391a11378fecfe3d557374733fede567deee7", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6585 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/task/dot_test.py", + "sha256": "26637cfc5e91f4625c3ec1538f38fdf3d26fe0f400458cc5dac314d7ad7aae3b", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7241 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/task/free_water.py", + "sha256": "e7c53d5592f61820a5fc6e64edd8a74705dd9850924ded4ab10f211f12504dbc", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7329 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/task/grating_test.py", + "sha256": "c38657fafe93c69b169860b0f17cabbaa77ad69420d86685f9a3870f6ef4020c", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7539 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/task/no_stimulus.py", + "sha256": "20079d165099cf2497446bca7ba9bfef7adc9fa9472585b57be430ff4ec5ef22", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6652 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/utils/create_ethopy_task.py", + "sha256": "caff0ffe98b843ef1a1f047ebdacef581a04f4c795736e877c4664f141a82be2", + "language": "Python", + "lines": 173, + "truncated": false, + "block": 9, + "row": 10039 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/utils/ethopy_logging.py", + "sha256": "4da8419af88facf8ee0f0078442fa79081e649ddd92cade45e4097c24d0a9dbc", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 9, + "row": 9841 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/utils/exceptions.py", + "sha256": "247793959b24d1d0f83315cb5e2bac221f69e75de6d9a753bb71acd782f24ef3", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 7896 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/utils/export/nwb.py", + "sha256": "68b7bdb6c1369e568a01190b7ec9c5cc2227a92884565a166894af3be0c50468", + "language": "Python", + "lines": 1594, + "truncated": false, + "block": 9, + "row": 12512 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/utils/helper_functions.py", + "sha256": "3e34542050a5967dfc609f460a979a5be585b484bd954fa71dcf2812efd842c9", + "language": "Python", + "lines": 548, + "truncated": false, + "block": 9, + "row": 11736 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/utils/presenter.py", + "sha256": "a3e64683175bd1d0196c050d0e416fe0244e169a30ed70f9cd2c4a7530b39aa2", + "language": "Python", + "lines": 173, + "truncated": false, + "block": 9, + "row": 10128 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/utils/start.py", + "sha256": "9ab8491ec38527e1d0b060f3bba97ecd5fc5fba6cd9a65494db547f205435d5c", + "language": "Python", + "lines": 362, + "truncated": false, + "block": 9, + "row": 11051 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/utils/task.py", + "sha256": "b03098a5523580d7cbd108a40749c03ad59ca69c5577167c4e91cd74728449f4", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 8078 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/utils/task_helper_funcs.py", + "sha256": "53ca53b036000da86d712e51300e61ef404b3fc0cd7d29315f52c046625c0e08", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7812 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/utils/thread_worker.py", + "sha256": "c12ff0bd14e9696795b5540f14af963f7defe4f4ae6a30e72fc194d516897963", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 9, + "row": 7100 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/utils/timer.py", + "sha256": "340579a3e57e10f5e01b246c93c4b48fdad5f30c8aa4693a5db04cd1de1919e1", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6606 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/utils/touch_interface.py", + "sha256": "db9fdd25878aa615220472763688ada3653af73691229dc9add507da4612bf76", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 9, + "row": 9580 + }, + { + "path": "ethopy_package-main.zip/src/ethopy/utils/writer.py", + "sha256": "e0f867ef1a1bf96f1802ea3502cc0cb52a2c7619c2e839681ac4ea627cb2413a", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 9, + "row": 8350 + }, + { + "path": "ethopy_package-main.zip/tests/conftest.py", + "sha256": "07ddfe3b1d1fa55f1794b22d038a2eb6d2469efe2177284308ebae0bd1168e7f", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 9, + "row": 9693 + }, + { + "path": "ethopy_package-main.zip/tests/test_behavior.py", + "sha256": "a81ac0881caea8aca8929067f8530021c1ee53deb10cc15a5eab5344b2b3ce3d", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 9, + "row": 9443 + }, + { + "path": "ethopy_package-main.zip/tests/test_experiment.py", + "sha256": "6dfefba7626aa4715119b65001ca269ed0fb3d27ac5fea97183a58b934985027", + "language": "Python", + "lines": 283, + "truncated": false, + "block": 9, + "row": 10939 + }, + { + "path": "ethopy_package-main.zip/tests/test_logger.py", + "sha256": "fc1b13fa14c98eff74257a6b84f0237fd887a12a1f88f88a5450c28da869bb6f", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 8983 + } + ] +} \ No newline at end of file diff --git a/manifests/64/zenodo__18774630.json b/manifests/64/zenodo__18774630.json new file mode 100644 index 0000000000000000000000000000000000000000..13defc9040dcac9dd008809524e2e2fb0b682946 --- /dev/null +++ b/manifests/64/zenodo__18774630.json @@ -0,0 +1,129 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18774630", + "url": "10.5281/zenodo.18774630", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Fig3_spike_drift_trace_20250220_HS_NoNeedle_NoCuration.m", + "sha256": "92d9c60527fa4fbcf4f8de8577ad4a08bf45788cc1267b951f9dcf9cb40820fa", + "language": "MATLAB", + "lines": 97, + "truncated": false, + "block": 9, + "row": 4848 + }, + { + "path": "Fig3_spike_drift_trace_20250220_HS_WithNeedle_NoCuration.m", + "sha256": "5e975b0249f21756e52c13d4fb49a55d816ade7e7ec9360f67226637476a1959", + "language": "MATLAB", + "lines": 97, + "truncated": false, + "block": 9, + "row": 4837 + }, + { + "path": "Supp_LFP_noise_1031.m", + "sha256": "b1b7131da23f1ec404d0eb62617d49e021970281b628a441a6105e8928792981", + "language": "MATLAB", + "lines": 177, + "truncated": false, + "block": 9, + "row": 5108 + }, + { + "path": "Supp_PSD_VS_depth.m", + "sha256": "08d221c1fb30d08df3e32fd0ee34ebc5b5788471535f16898e47b3ef7613d136", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4801 + }, + { + "path": "fig4_tuning_listen.m", + "sha256": "289a3cf510f78924ea2be71c0309de27402dfd9b17c5bbb258130f9baf53ea08", + "language": "MATLAB", + "lines": 1050, + "truncated": false, + "block": 9, + "row": 5954 + }, + { + "path": "fig4_tuning_speak.m", + "sha256": "96f548674801840ea69d8c2c47f5fdc0f5ffd6e3fd73cff0a4aaab24f5a88140", + "language": "MATLAB", + "lines": 1097, + "truncated": false, + "block": 9, + "row": 5960 + }, + { + "path": "fig_2_amp_depth_type.m", + "sha256": "5b57d77b9d08047245dd874bc86979fbd49655e2668f2df9df9e6f87b2ed76eb", + "language": "MATLAB", + "lines": 497, + "truncated": false, + "block": 9, + "row": 5763 + }, + { + "path": "fig_2_statistics_amp_snr_fr_acg_tpd.m", + "sha256": "11d4692f8a763d6c8932b4d007d83c4188eab46bd37a945bdb17762411e5046e", + "language": "MATLAB", + "lines": 273, + "truncated": false, + "block": 9, + "row": 5514 + }, + { + "path": "fig_2_yield.m", + "sha256": "01a46e7170094b8fb0a8bf5334d73cf423db205496ee8e93f956cc387132a22b", + "language": "MATLAB", + "lines": 201, + "truncated": false, + "block": 9, + "row": 5408 + }, + { + "path": "fig_3_recording_time_stable_unit.m", + "sha256": "64ad739f42c69eb00895c75863579f0d393f3a5f07af8e61f403d77733c25ab7", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 9, + "row": 4326 + }, + { + "path": "fig_3_spike_position_dirft_distribution.m", + "sha256": "235278de0d086d550edeb54b66f313270d533dbdedd9982b7cdd534df8efaeff", + "language": "MATLAB", + "lines": 119, + "truncated": false, + "block": 9, + "row": 5013 + }, + { + "path": "fig_3_statistics_line_4_selected.m", + "sha256": "7bab3418d4fff9f2154956ce68776fbe3c21bfe45ca49fba084bf1ba62f9ccc6", + "language": "MATLAB", + "lines": 594, + "truncated": false, + "block": 9, + "row": 5858 + }, + { + "path": "waveform_feature_calculation_3.m", + "sha256": "577ae06541cbda3b8619272827915e2375cdae6a801e49fbdeb49a2f97d1ea28", + "language": "MATLAB", + "lines": 308, + "truncated": false, + "block": 9, + "row": 5616 + } + ] +} \ No newline at end of file diff --git a/manifests/65/github.com__diedrichsenlab__cortico_cereb_connectivity.json b/manifests/65/github.com__diedrichsenlab__cortico_cereb_connectivity.json new file mode 100644 index 0000000000000000000000000000000000000000..3080ea5cd3fae89f410d7c15e9d2ae5c83fc9db7 --- /dev/null +++ b/manifests/65/github.com__diedrichsenlab__cortico_cereb_connectivity.json @@ -0,0 +1,336 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/diedrichsenlab/cortico_cereb_connectivity", + "url": "https://github.com/DiedrichsenLab/cortico_cereb_connectivity", + "host": "github.com", + "commit": "a0d38b52ba64aea5ed09d17e065ff05550f84124", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "12430d16884afc98e3bbe1eb195c2946e67f78c3cab913f7c2fb9cb3ee24a373", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2760 + }, + { + "path": "README.md", + "sha256": "0b831f61f0b0695e6e6d221d0bfa236aad4cfc90a288ce9cc3a9b3041e8c8e9c", + "language": "Text", + "lines": 71, + "truncated": false, + "block": 9, + "row": 14603 + }, + { + "path": "cio.py", + "sha256": "6ebc0b5c6c3f99d0ad4857d268c1edf569826a352438bafc6c7e62b0ef9f726f", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 9, + "row": 9671 + }, + { + "path": "data.py", + "sha256": "de07f63edf61f4791f0818efa5e2a5dc0b6e72da9c40c817f68ea7431b5c275d", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 8194 + }, + { + "path": "depreciated/Evaluate_model_fusion_noint.ipynb", + "sha256": "83148e0c05d74dd7a787414b4631fb8364da3e39035355c72e247fbf3888445c", + "language": "Jupyter", + "lines": 40, + "truncated": false, + "block": 9, + "row": 2198 + }, + { + "path": "depreciated/Evaluate_model_noint.ipynb", + "sha256": "98443835782cabcbcfc4fb50ef44fb8ffc1d31c980c37b073e87838b28135660", + "language": "Jupyter", + "lines": 141, + "truncated": false, + "block": 9, + "row": 2355 + }, + { + "path": "depreciated/Evaluate_models_MTDB.ipynb", + "sha256": "e0c594c98f07a443360cbafe2121800be05d0662718a47a5bb891fe528f02df9", + "language": "Jupyter", + "lines": 89, + "truncated": false, + "block": 9, + "row": 2255 + }, + { + "path": "depreciated/Evaluate_noscale.ipynb", + "sha256": "d9e6bd875889c1363c8afdac55623efdefa33dc05eee100b0950aca5bd14fead", + "language": "Jupyter", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2184 + }, + { + "path": "depreciated/Evaluate_training.ipynb", + "sha256": "4bebdce86ec98c4e2133b61c1a8e3dad2cc6b118006af01494f5d8832064cef1", + "language": "Jupyter", + "lines": 42, + "truncated": false, + "block": 9, + "row": 2201 + }, + { + "path": "depreciated/model_legacy.py", + "sha256": "3aee5b6811a5b7bb998af02974bb12563fa6d990f7f66d55201a5d79224f0260", + "language": "Python", + "lines": 344, + "truncated": false, + "block": 9, + "row": 11228 + }, + { + "path": "depreciated/rest_intercept.ipynb", + "sha256": "f77a66b33e0778d24240d45dfdcf056cfb16b1bfecb62e6b700096c7d1afc2fb", + "language": "Jupyter", + "lines": 41, + "truncated": false, + "block": 9, + "row": 2199 + }, + { + "path": "depreciated/script_run_models_demand.py", + "sha256": "78b7c6030e5a7c6058ecf987218e4c33e40a3c60e446237ecc933f5d1d389e95", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 9098 + }, + { + "path": "depreciated/script_run_models_mdtb.py", + "sha256": "845b421da596a670a3584611c2e51811a9f05559e1706e82fda382078e9e61ee", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 9, + "row": 10159 + }, + { + "path": "depreciated/script_run_models_nishimoto.py", + "sha256": "dd8c5ac8bbc81b6d1c81e9f886b8e484282f738cf66e1af2548c18374b3df6f2", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 9, + "row": 9128 + }, + { + "path": "evaluation.py", + "sha256": "4c623f7bcba6be95c702ae038ab644fd5eabb00148365c7a8a808b9294173313", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 8005 + }, + { + "path": "globals.py", + "sha256": "a7146fbd1aa377d9b841cf1f4247fc171d270d99a96187240835a904a08e4e91", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6841 + }, + { + "path": "model.py", + "sha256": "4d18f2c2ba3b732ccba42f6a79549ccc2ce2c918f2e52a4cd2ccdbdbc7d6bd8e", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 9, + "row": 10244 + }, + { + "path": "notebooks/.ipynb_checkpoints/Evaluate_models-checkpoint.ipynb", + "sha256": "cf13dadcba5a365806b95d3195888c48b8a97bf5a1b75c2042bb6c06f92bd9f2", + "language": "Jupyter", + "lines": 51, + "truncated": false, + "block": 9, + "row": 2220 + }, + { + "path": "notebooks/0.1.Application_example.ipynb", + "sha256": "56ba440da3ea6bdd33a58cea9bc1f86c4525112e1733015b519c59ae19c0e4b9", + "language": "Jupyter", + "lines": 101, + "truncated": false, + "block": 9, + "row": 2325 + }, + { + "path": "notebooks/0.2.Training_models.ipynb", + "sha256": "0e5ecd2a1b53d2388827212f00ff298edcd505aac019b49f8dd1f4e1ec0fec36", + "language": "Jupyter", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2178 + }, + { + "path": "notebooks/0.3.Noiseceilings.ipynb", + "sha256": "678a8707ed1f3ec8242eed560805dc20878ad5f332b2e74c27cc46c68b7ec1f3", + "language": "Jupyter", + "lines": 52, + "truncated": false, + "block": 9, + "row": 2297 + }, + { + "path": "notebooks/0.4.Averaging_and_visualizing.ipynb", + "sha256": "64badd3932d475a6497094a311db80677020b7d878fb0826d6f0aa19c702cc82", + "language": "Jupyter", + "lines": 80, + "truncated": false, + "block": 9, + "row": 2304 + }, + { + "path": "notebooks/1.Evaluation_simulation.ipynb", + "sha256": "adc80b6ac7683295819a14fa12c4348a8d6107ddd24fb43cdfa15627147cee64", + "language": "Jupyter", + "lines": 124, + "truncated": false, + "block": 9, + "row": 2385 + }, + { + "path": "notebooks/2.Model_recovery_simulations.ipynb", + "sha256": "b7b55649d1d5adeb5ba6cdb3c1e6a9922e2569fc0eeb8a7d6e160c67b4d789c4", + "language": "Jupyter", + "lines": 153, + "truncated": false, + "block": 9, + "row": 2403 + }, + { + "path": "notebooks/3. Cortex_vs_cerebellum_global.ipynb", + "sha256": "4e4254a7d8716f6e81092b77a5aaad3a51d733a06e39e48461d268fe3949edd1", + "language": "Jupyter", + "lines": 98, + "truncated": false, + "block": 9, + "row": 2273 + }, + { + "path": "notebooks/4. Evaluate_group_individual.ipynb", + "sha256": "2b5f2fa054b0ae2c9147e1ffdaa35a7b0623d096a9abf6f06dce74594e292ca7", + "language": "Jupyter", + "lines": 103, + "truncated": false, + "block": 9, + "row": 2280 + }, + { + "path": "notebooks/5. Evaluate_model_fusion_int.ipynb", + "sha256": "1de30a1037e3144b4adab9da28d59be5870840f05e7c66c823f20475563a18e5", + "language": "Jupyter", + "lines": 51, + "truncated": false, + "block": 9, + "row": 2214 + }, + { + "path": "notebooks/6. Evaluate_model_int.ipynb", + "sha256": "0cb67a07dfabab15720209449dfe3a6971e04e6e9af4d7e0d14ecddfe3150091", + "language": "Jupyter", + "lines": 168, + "truncated": false, + "block": 9, + "row": 2405 + }, + { + "path": "notebooks/7. Evaluate_NNLS.ipynb", + "sha256": "124cb0cbb243ef4c383961495b471b9ef8404709ca0acbfb656dd6ab71f26739", + "language": "Jupyter", + "lines": 68, + "truncated": false, + "block": 9, + "row": 2236 + }, + { + "path": "run_model.py", + "sha256": "799a10e032748bc7ea8587d05cc3f3ab1f5338f87284dfb099a413f7ac405306", + "language": "Python", + "lines": 782, + "truncated": false, + "block": 9, + "row": 12208 + }, + { + "path": "scripts/script_export_models.py", + "sha256": "d9c26141f677cd31e8d555d2d5951afb3d537d851c92e7295083a68d74b1a38b", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 8026 + }, + { + "path": "scripts/script_fuse_models.py", + "sha256": "1c7f4c2618d0f9c99252aee49dd0135c22bbb95aaa2b7dacff3d8d0e907ea089", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 9, + "row": 10225 + }, + { + "path": "scripts/script_summarize_weights.py", + "sha256": "e450cbc567aa0954f18e5f7e39a62ebe71a9680878870cb525dd3493b9c9e8bd", + "language": "Python", + "lines": 303, + "truncated": false, + "block": 9, + "row": 11287 + }, + { + "path": "scripts/script_train_eval_models.py", + "sha256": "428d81daa88258b8ffaa6baa2a1c3ec7905df6eb0b7ce1ea7160979ba2193295", + "language": "Python", + "lines": 307, + "truncated": false, + "block": 9, + "row": 11143 + }, + { + "path": "simulate.py", + "sha256": "a4de4b0b8e077fc4c67d69d90ce0b62876862fc423bca0a9a6678b78f044c5ec", + "language": "Python", + "lines": 301, + "truncated": false, + "block": 9, + "row": 10945 + }, + { + "path": "tests/test_nnls.py", + "sha256": "4e0c17a250527b6576d5172ef6e0af2877a14a9f1fc1157d5144ab1cec510ffc", + "language": "Python", + "lines": 212, + "truncated": false, + "block": 9, + "row": 9773 + } + ] +} \ No newline at end of file diff --git a/manifests/65/github.com__sotlampr__seg.json b/manifests/65/github.com__sotlampr__seg.json new file mode 100644 index 0000000000000000000000000000000000000000..928d7e568df47e20e44e77831af4fa1d19482923 --- /dev/null +++ b/manifests/65/github.com__sotlampr__seg.json @@ -0,0 +1,291 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/sotlampr/seg", + "url": "https://github.com/sotlampr/seg", + "host": "github.com", + "commit": "7c2d69c2f1769e5f03dd308b54518931600e762d", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "cec167af18a1bf06789606771e216d236c4f310bb4c55b5c08860c8dcd35b05b", + "language": "Text", + "lines": 158, + "truncated": false, + "block": 9, + "row": 14631 + }, + { + "path": "data/deeproot_import.py", + "sha256": "ea725183328a281c417941c676b252e169afcdebb59871de98b2f82b70b5ae11", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 9, + "row": 9564 + }, + { + "path": "data/grassland_import.py", + "sha256": "bb06d9ce3e82b9fe78b06c3eaed71f9cec1d4d8459e4715f7e48abf1168c38b0", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 8116 + }, + { + "path": "data/make-corrected.py", + "sha256": "111523cd345d7868ff1d1688c087833f01cb5e384805ad20e08cd48690a5570d", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 7650 + }, + { + "path": "data/prmi_import.py", + "sha256": "05e317cfaaaf60f9d87f256e01c934334716a27980afc239ebd8e0b4aba92cf5", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 9, + "row": 8117 + }, + { + "path": "data/utils.py", + "sha256": "deb9d43fb21f3be1100377c2bd4cb1cdb054065d6864951556a266bd43b2ffa5", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 9, + "row": 8305 + }, + { + "path": "download_pretrained.sh", + "sha256": "370cb4becce7f195776a1c31f846422b38991d2ea6e452b57968a88c64a7432b", + "language": "Shell", + "lines": 21, + "truncated": false, + "block": 9, + "row": 14102 + }, + { + "path": "install.sh", + "sha256": "8afb7ad78a8b3c43080622950c2f2236cbdbba11b2775bcf077afcd04128724a", + "language": "Shell", + "lines": 47, + "truncated": false, + "block": 9, + "row": 14228 + }, + { + "path": "src/csv-from-results.py", + "sha256": "8cbfbb6d257a9532e5aa563b3a9996f534416fb4ee8aebb66d2bf3ac5c6b8cd8", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 9, + "row": 8550 + }, + { + "path": "src/gather-results.py", + "sha256": "3832b9533b55837237fd441b3d0e14fc90d245794d402f66860268d6e10ecadf", + "language": "Python", + "lines": 236, + "truncated": false, + "block": 9, + "row": 10329 + }, + { + "path": "src/infer.py", + "sha256": "4361b7aa4d534e9b2ddda85678008384f3e8a9ee3787ffd79f16a89407a1a83c", + "language": "Python", + "lines": 260, + "truncated": false, + "block": 9, + "row": 10685 + }, + { + "path": "src/make-meta.sh", + "sha256": "685d946bc840dde8344be249506e9168599cfa3abcad286875c9904395f3eba9", + "language": "Shell", + "lines": 79, + "truncated": false, + "block": 9, + "row": 14282 + }, + { + "path": "src/print_flops.py", + "sha256": "f3d66cab9e1f59dd696e3d0fb1c9731448fa899eccc05dbba895c1bc6c25032b", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7371 + }, + { + "path": "src/run.sh", + "sha256": "57819954d70522e094e3b54e4cb7fbc419404e45e62a2d3d1fddb3984f85b695", + "language": "Shell", + "lines": 227, + "truncated": false, + "block": 9, + "row": 14372 + }, + { + "path": "src/seg.py", + "sha256": "bd168e88349e7acebe4a1c6e15bbf9e4fb8763fe21b8090778b8af5c65e94ef5", + "language": "Python", + "lines": 549, + "truncated": false, + "block": 9, + "row": 11784 + }, + { + "path": "src/seg_common.py", + "sha256": "6c91a7b080ed069d4b43bec1104f7c352702d1500493116d6c9216f1014df983", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 9, + "row": 8640 + }, + { + "path": "src/seg_infer.py", + "sha256": "224b68cb1d83cf0328336bb3c715c00e0dbbe266162c9cb718cfcdfa9add74c3", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 9, + "row": 10290 + }, + { + "path": "src/seg_m2f.py", + "sha256": "0e620e76225827fdd76c3d310b4d7208db498f4858d57c8c4d06b379becc7401", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 9, + "row": 8974 + }, + { + "path": "src/seg_mb_sam.py", + "sha256": "bee82364917add375aaa203e744b6cdf409226caff5baeffefa1ca369e839a5a", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 7936 + }, + { + "path": "src/seg_rootnav.py", + "sha256": "7395d54cbf2969b486ca73960cddd5086edccd8dc2c40db4f236cd588dc0cc0b", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8126 + }, + { + "path": "src/seg_sam.py", + "sha256": "29f1a2c3ee2be5d414cb41e91c27eaf9ce64f84540407998dbf202111d00b316", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 8003 + }, + { + "path": "src/seg_sam2.py", + "sha256": "0d93bcbd7b774f29145dcfc6ff9f96b00822e60865fff489e8a5951ddf7f42dc", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 9, + "row": 8823 + }, + { + "path": "src/seg_score.py", + "sha256": "4f35addc551c0cb611e40a788f00e360d7ab8f208f8ecfc0dc7083b47aa16264", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8258 + }, + { + "path": "src/seg_segmentation_pytorch.py", + "sha256": "98bd2c613b5137566b6edf9b1adce49b562ee2a1522d104a2dd293759d8ae857", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 9, + "row": 8620 + }, + { + "path": "src/seg_segroot.py", + "sha256": "841bb946f1ad2f566137bfdf2e62e1617b5bf094065e595b81670e8ba7953a85", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 8052 + }, + { + "path": "src/seg_torchvision_models.py", + "sha256": "20cd4be98b2b23f91a29cb1a9755d17e02ffe25c9a1dbbeed894efdf7e73394b", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7881 + }, + { + "path": "src/seg_unet.py", + "sha256": "78b11c8a4bee279e6bea11a94e50439612fe295c98d841698db25e13790488ec", + "language": "Python", + "lines": 288, + "truncated": false, + "block": 9, + "row": 10709 + }, + { + "path": "src/seg_unet_valid.py", + "sha256": "1d1ad3b3c465b54b86105863849cbb7b891aa311c512ab46ad0f232fdea3f411", + "language": "Python", + "lines": 316, + "truncated": false, + "block": 9, + "row": 10876 + }, + { + "path": "src/seg_utils.py", + "sha256": "985f6c0b54a6678e268e79deea11c213b83b49d70ec1a7c747d0eed1ab4b9458", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6994 + }, + { + "path": "test_seg.py", + "sha256": "5952866a40e88676a9a571def59d3a41ac642de408ff24f8c1ab9d9780b27867", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 9, + "row": 9643 + } + ] +} \ No newline at end of file diff --git a/manifests/66/zenodo__18764612.json b/manifests/66/zenodo__18764612.json new file mode 100644 index 0000000000000000000000000000000000000000..19a8a41f680ae2608e125737d9acf46659b981ea --- /dev/null +++ b/manifests/66/zenodo__18764612.json @@ -0,0 +1,120 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18764612", + "url": "10.5281/zenodo.18764612", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "a471fcd849eba33ec720b7f520f4a77b03d68396e95592bfec80f0122499c5bf", + "language": "Text", + "lines": 33, + "truncated": false, + "block": 9, + "row": 14507 + }, + { + "path": "TTS_Data_and_Figure_generation_codes/CPU_simulation_data/ITS_compare.m", + "sha256": "292a89c5f8ae8d4ce06a8f44324b18824f68f297bcb4d3485ff9d5d81e55b159", + "language": "MATLAB", + "lines": 256, + "truncated": false, + "block": 9, + "row": 5406 + }, + { + "path": "TTS_Data_and_Figure_generation_codes/FPGA_recorded_data/Max3SAT_TTS_data_and_Fig4a_code/FPGA_TTS.m", + "sha256": "9bf7e79663e5452fceb51f36f95e32e2577a55992606980a1039a442efe643ad", + "language": "MATLAB", + "lines": 196, + "truncated": false, + "block": 9, + "row": 5211 + }, + { + "path": "TTS_Data_and_Figure_generation_codes/FPGA_recorded_data/TTS_3R3X_data_and_Fig4b_code/analyze_3r3x_tts_hoim_opt.m", + "sha256": "775fe310d63e2c1663f8c9ddedf4b231b4de985e855d3544f7f87291934917ae", + "language": "MATLAB", + "lines": 289, + "truncated": false, + "block": 9, + "row": 5479 + }, + { + "path": "TTS_Data_and_Figure_generation_codes/FPGA_recorded_data/TTS_5R5X_7R7X_data_and_Fig4c_code/TTS_plot_for_5_7.m", + "sha256": "62ea4ab7ff08268ab66f00fcc956253205a706fedf8e58b81f63cc009300adec", + "language": "MATLAB", + "lines": 328, + "truncated": false, + "block": 9, + "row": 5547 + }, + { + "path": "algorithm_codes/N_HOIM_single_sipin_flip/example_trial_run.py", + "sha256": "4ff803f5bfad96aba3b661a525b054b3acac75782544c5d2a42517dd7231a636", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7081 + }, + { + "path": "algorithm_codes/N_HOIM_single_sipin_flip/run_one_trial.py", + "sha256": "80e8ff4e1dc5e15cfa59c0d8c554dd2a8da4ea403abb840bdba0c7437a79a468", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 9, + "row": 9907 + }, + { + "path": "algorithm_codes/N_HOIM_with_GC/example_trial_run.py", + "sha256": "32dd88db20c4f336b78fbaec37713e9c5ff9480d670ddcce5c8d92676d484b2e", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7152 + }, + { + "path": "algorithm_codes/N_HOIM_with_GC/run_one_trial.py", + "sha256": "fc18fcd4799b28a7194f130787c19f22d077922d09f326f52d29b43f1f8656ed", + "language": "Python", + "lines": 218, + "truncated": false, + "block": 9, + "row": 10389 + }, + { + "path": "algorithm_codes/QUBO_NeuroSA/example_trial_run.py", + "sha256": "4ff803f5bfad96aba3b661a525b054b3acac75782544c5d2a42517dd7231a636", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7081 + }, + { + "path": "algorithm_codes/QUBO_NeuroSA/run_one_trial.py", + "sha256": "58a3585fcc5896da140fa64c035232b8f87a36262e7a849f62b2e8eeccf32731", + "language": "Python", + "lines": 225, + "truncated": false, + "block": 9, + "row": 10345 + }, + { + "path": "hardware_codes/generate_verilog_scripts.py", + "sha256": "07ef10934ece77e61aa5ab4bf0fef6255676117a7baf9de93be3a805d59f7622", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 9, + "row": 11374 + } + ] +} \ No newline at end of file diff --git a/manifests/67/github.com__yuelongwu__feabas.json b/manifests/67/github.com__yuelongwu__feabas.json new file mode 100644 index 0000000000000000000000000000000000000000..3bec98ba0bc7e292b81bd3f26e7428e0d6922bdd --- /dev/null +++ b/manifests/67/github.com__yuelongwu__feabas.json @@ -0,0 +1,327 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/yuelongwu/feabas", + "url": "https://github.com/YuelongWu/feabas", + "host": "github.com", + "commit": "605e6597a834d0a2e82cd331b94d3b4f876c62a9", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "e3ae61a71567dacb8d8e8f257cc8e5f5633f155b8f14a1bf9d7dd335e6a6cc0c", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2861 + }, + { + "path": "README.md", + "sha256": "962a4ef601c25298526162f0f95ae6f11b0833b0de658be3656e01435fb733df", + "language": "Text", + "lines": 348, + "truncated": false, + "block": 9, + "row": 14747 + }, + { + "path": "feabas/__init__.py", + "sha256": "c52e4bd3361e308c63e32ab5d64dd0adbfee8c8d663ef0a700a2d5869f6a245e", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6095 + }, + { + "path": "feabas/aligner.py", + "sha256": "a7c00ba32bce16c5b45273388a41b01f0201be7e88fdd7f2b66e61542e2cefd8", + "language": "Python", + "lines": 1637, + "truncated": false, + "block": 9, + "row": 12608 + }, + { + "path": "feabas/caching.py", + "sha256": "9306256b3b4f07585943e60614f2181b5efd595d09891951d1c7814de6da671c", + "language": "Python", + "lines": 596, + "truncated": false, + "block": 9, + "row": 11609 + }, + { + "path": "feabas/common.py", + "sha256": "de3abee0f9735c4164c736c76951da2282297aca3de01b2c3170be0b5b2fb068", + "language": "Python", + "lines": 896, + "truncated": false, + "block": 9, + "row": 12314 + }, + { + "path": "feabas/concurrent.py", + "sha256": "873e23de320dbb3e1ceae97563d87bd7acec4f11154de0ccc6db44aa92d46c07", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 9, + "row": 10533 + }, + { + "path": "feabas/config.py", + "sha256": "b6e3d7c87927a4b17ae37fa893225667ad260b60f938e3b960d831e134a59057", + "language": "Python", + "lines": 310, + "truncated": false, + "block": 9, + "row": 10895 + }, + { + "path": "feabas/constant.py", + "sha256": "ade2c5c39c03ce6c81fa6ddb7eb97821ec8a270f61caaae7ee0bfa257fb07840", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7642 + }, + { + "path": "feabas/dal.py", + "sha256": "7086daea6f3955b2029cff5cef5287a1c11d498e357e60b803d76079a94798be", + "language": "Python", + "lines": 1558, + "truncated": false, + "block": 9, + "row": 12549 + }, + { + "path": "feabas/logging.py", + "sha256": "8ff2ee263d03f36a1483a55af3d06c9fcce7ba2d7f292bdeeb2c37fb84cc807a", + "language": "Python", + "lines": 151, + "truncated": false, + "block": 9, + "row": 9576 + }, + { + "path": "feabas/matcher.py", + "sha256": "45e56768cc27b084429dcf3eec198106ef795c85b9e87169f14b54ba90c92542", + "language": "Python", + "lines": 1058, + "truncated": false, + "block": 9, + "row": 12490 + }, + { + "path": "feabas/material.py", + "sha256": "439aed2d1e01974cb7b1d557af3409723bfcfd4363daff7269a4b5e562f42ba4", + "language": "Python", + "lines": 551, + "truncated": false, + "block": 9, + "row": 11901 + }, + { + "path": "feabas/mesh.py", + "sha256": "30d7e96cb4d5351a992697f5209085b1d03eff28720e5ba5f0316198511fda5c", + "language": "Python", + "lines": 3409, + "truncated": false, + "block": 9, + "row": 12680 + }, + { + "path": "feabas/mipmap.py", + "sha256": "20541b1c1c7931b41d6e81c2773db821006be75c569ba97dbcf266376e23a083", + "language": "Python", + "lines": 674, + "truncated": false, + "block": 9, + "row": 12211 + }, + { + "path": "feabas/multisem.py", + "sha256": "fa8f307b0db4fddc426ff955672bbb0330c95a22ae3d9c09e0ec11af8e2b21e2", + "language": "Python", + "lines": 227, + "truncated": false, + "block": 9, + "row": 10582 + }, + { + "path": "feabas/optimizer.py", + "sha256": "a9cd099fd342c3d9f0b280aa062fb3899c2565eef37697a7dd1a152cffdbb10f", + "language": "Python", + "lines": 2190, + "truncated": false, + "block": 9, + "row": 12641 + }, + { + "path": "feabas/renderer.py", + "sha256": "84313f4f95ee173e22c700cbf3ee1ff476694ea9f622be3417d0ec16657accac", + "language": "Python", + "lines": 1469, + "truncated": false, + "block": 9, + "row": 12570 + }, + { + "path": "feabas/spatial.py", + "sha256": "9cb3cacb0fcdb3b8418cded5588d1449ac376b08b2d9df49916ce42975d31f64", + "language": "Python", + "lines": 1358, + "truncated": false, + "block": 9, + "row": 12528 + }, + { + "path": "feabas/stitcher.py", + "sha256": "49607c6bcb24ae1ff901e12bac7aff91737962c20e9592deca4a4ff333f1e190", + "language": "Python", + "lines": 2046, + "truncated": false, + "block": 9, + "row": 12644 + }, + { + "path": "feabas/storage.py", + "sha256": "c40c99dc17c87ba89109d74e30b753797ef07342cd27c7b8b084d870f1cf0f49", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 9, + "row": 9811 + }, + { + "path": "feabas/thumbnail.py", + "sha256": "ac4677356e95a26bbd34543245a43f9747832102344e1d257a03caca78f27145", + "language": "Python", + "lines": 933, + "truncated": false, + "block": 9, + "row": 12364 + }, + { + "path": "feabas/visualization.py", + "sha256": "b6547b099a4ac0da6cff1b72c1db80971f5f9f0560119798164dbdf0dfa7ca49", + "language": "Python", + "lines": 269, + "truncated": false, + "block": 9, + "row": 10747 + }, + { + "path": "scripts/align_main.py", + "sha256": "c8f025c0be96d023a3e0a65609e703014986e23bb9f6a60f8791489447e82236", + "language": "Python", + "lines": 629, + "truncated": false, + "block": 9, + "row": 12292 + }, + { + "path": "scripts/stitch_main.py", + "sha256": "1d2a8540629aecfe4b55e4136e958c3ae9400a65ea9a6dbe18cab5b0ef047544", + "language": "Python", + "lines": 301, + "truncated": false, + "block": 9, + "row": 11361 + }, + { + "path": "scripts/thumbnail_main.py", + "sha256": "6083df1e94c8c57e717b35a60880286ff1838ad36ef6215cb4008ac96b85a436", + "language": "Python", + "lines": 666, + "truncated": false, + "block": 9, + "row": 12320 + }, + { + "path": "setup.py", + "sha256": "5a7c770850f2a9afad161e4caf272456279e0e1e72d0c9d72c21c7d91e2e841d", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7323 + }, + { + "path": "tools/compute_alignment_residues.py", + "sha256": "9c331ff47a167c5ff3065a6569202e459637b507341d3056dcb9ee0a33755078", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8753 + }, + { + "path": "tools/convert_manual_thumbnail_matches.py", + "sha256": "6aabbb7f1ac0aad531e7171f2ec4db613c5b59fa291669ec6472b10127ac783f", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7659 + }, + { + "path": "tools/export_match_to_bigwarp_csv.py", + "sha256": "fbaf15f63deebb9f9a00753ffa7e9361c31f5bbd59120d247208a2c90bf535aa", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 8189 + }, + { + "path": "tools/merge_manual_match.py", + "sha256": "c8bc309944c4c987380ae044034a4e1381e8f61f55ab2444be8a24e7a707f021", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 8227 + }, + { + "path": "tools/normalize_aligned_meshes.py", + "sha256": "3cb0942b1228cb1652e09c31cd1b18171f2722f0842954459d4743344b614afc", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 9, + "row": 8706 + }, + { + "path": "tools/render_aligned_thumbnails.py", + "sha256": "62fc91076216fc3881d9a725b5f098583906b382dba493dde0afef72fb2447d5", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 9, + "row": 9698 + }, + { + "path": "tools/split_wrinkles.py", + "sha256": "71150c5fc8bc210d251f0442cbf2a7a84e046f38862e5f5fadd674717bf84ca7", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7954 + }, + { + "path": "tools/visualize_align_match_coverage.py", + "sha256": "3b40c6cacbf15fbfb7e81b4b0b537358de86959d004ffd23949f82beb901bc22", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 9, + "row": 10266 + } + ] +} \ No newline at end of file diff --git a/manifests/68/github.com__lenaro09__neurobed_ml.json b/manifests/68/github.com__lenaro09__neurobed_ml.json new file mode 100644 index 0000000000000000000000000000000000000000..ea10d7606cf69a453ecade761a490e6302e4253e --- /dev/null +++ b/manifests/68/github.com__lenaro09__neurobed_ml.json @@ -0,0 +1,354 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/lenaro09/neurobed_ml", + "url": "https://github.com/LenaRo09/NeuroBED_ML", + "host": "github.com", + "commit": "c5e21208047398a4e06f72827bd96e102792448f", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "4f0cfe2f20cd45f5c450f24ba72d017ec86a7d2dcd9541a07caf238cf0c7bf38", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2761 + }, + { + "path": "NeuroBED_ML/analysis/02 - data_exploration/NeuroBED_ML_DataExploration.ipynb", + "sha256": "d2b0e7cd86c8e4d92d306f735a17ce1b812319126fa31d4fa1ec6182373d2f69", + "language": "Jupyter", + "lines": 776, + "truncated": false, + "block": 9, + "row": 2712 + }, + { + "path": "NeuroBED_ML/analysis/04 - models/01 - model0_RS/04 - scripts/01 - NeuroBED_ML_model0_aggResults.py", + "sha256": "430888550ee37efe474ff4cb92b176500c396ea21daa7acd0d4f9647cdcec813", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 9, + "row": 9481 + }, + { + "path": "NeuroBED_ML/analysis/04 - models/01 - model0_RS/04 - scripts/02 - AAL3_extractROIs2nifti.py", + "sha256": "6428d3511916b5ecfbb76cd68d9faffebc71e0246508101dbdd6e0670cf8b9c8", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 9166 + }, + { + "path": "NeuroBED_ML/analysis/04 - models/01 - model0_RS/04 - scripts/03 - Enrichment+Jaccard.py", + "sha256": "debddcd6f44806e5614a7bef5b8f65e5983031db440e8213b2205a858ca23276", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 10099 + }, + { + "path": "NeuroBED_ML/analysis/04 - models/01 - model0_RS/model0.py", + "sha256": "2a136a43c490c25a68881394bf6ac707b45af7813653d2f4795f5da0f1f02076", + "language": "Python", + "lines": 358, + "truncated": false, + "block": 9, + "row": 11550 + }, + { + "path": "NeuroBED_ML/analysis/04 - models/01 - model0_RS/model0.sh", + "sha256": "6a85c111985481e0bfb9ab5a39685bd61ebb4253bdc638cbd10c0b40a50bebdb", + "language": "Shell", + "lines": 24, + "truncated": false, + "block": 9, + "row": 14107 + }, + { + "path": "NeuroBED_ML/analysis/04 - models/02 - model1_singleModality/04 - scripts/01 - NeuroBED_ML_aggResults.py", + "sha256": "82746886c7ab606888bd6fd4e0312e37ddf087f4792b38440fe676c71fcc36bc", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 9, + "row": 10141 + }, + { + "path": "NeuroBED_ML/analysis/04 - models/02 - model1_singleModality/04 - scripts/02 - NeuroBED_ML_cleanResults.py", + "sha256": "a3ee3f55fd47fc60b31b5403ab6c8089ddd58153c3dc5fa4a1279366c6c15923", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 9, + "row": 9248 + }, + { + "path": "NeuroBED_ML/analysis/04 - models/02 - model1_singleModality/model1.py", + "sha256": "3f26e83a65ec57acd6da1377d98b90f6f8e3aab31c6d1c003c521c91bff3831b", + "language": "Python", + "lines": 381, + "truncated": false, + "block": 9, + "row": 11586 + }, + { + "path": "NeuroBED_ML/analysis/04 - models/02 - model1_singleModality/model1.sh", + "sha256": "32b6b38e79139aac60ccaf393a4be441daf6e01b08e34f22649114021e2e885a", + "language": "Shell", + "lines": 29, + "truncated": false, + "block": 9, + "row": 14110 + }, + { + "path": "NeuroBED_ML/analysis/04 - models/03 - model2_combinedModalities/04 - scripts/01 - NeuroBED_ML_aggResults.py", + "sha256": "24d055b199d00a9e3ee9c5d77bafda280e4f385440402bbe06a3f5c8bf3ed3bd", + "language": "Python", + "lines": 166, + "truncated": false, + "block": 9, + "row": 10143 + }, + { + "path": "NeuroBED_ML/analysis/04 - models/03 - model2_combinedModalities/04 - scripts/02 - NeuroBED_ML_cleanResults.py", + "sha256": "52307a54a2c6088d87586cd3370f2a5fb3daf650c6f93d843319063e7bdf6cca", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 9252 + }, + { + "path": "NeuroBED_ML/analysis/04 - models/03 - model2_combinedModalities/model2.py", + "sha256": "c0ddad1f42ccf664518892a93cb7ea860bcdc5c645269e41ef3975f78132fffd", + "language": "Python", + "lines": 472, + "truncated": false, + "block": 9, + "row": 11871 + }, + { + "path": "NeuroBED_ML/analysis/04 - models/03 - model2_combinedModalities/model2.sh", + "sha256": "8b51a5ad4454010a847dc656a7b0a8203fc18ee463d240b3d85742c7dd249dc2", + "language": "Shell", + "lines": 44, + "truncated": false, + "block": 9, + "row": 14183 + }, + { + "path": "NeuroBED_ML/analysis/04 - models/04 - crossModel_results/01 - scripts/01 - NeuroBED_ML_crossModelagg.py", + "sha256": "dd8bcca983f93061ba7d3503bdddf5c8d27995c553be86bdc1c0a7f0670358d8", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 9119 + }, + { + "path": "NeuroBED_ML/analysis/04 - models/04 - crossModel_results/01 - scripts/02 - NeuroBED_ML_crossStat.py", + "sha256": "758c662b1d11a30e8fcdc212e6cc709554a1e13dac2d7eb883392d68b8d5c636", + "language": "Python", + "lines": 240, + "truncated": false, + "block": 9, + "row": 10860 + }, + { + "path": "NeuroBED_ML/analysis/04 - models/04 - crossModel_results/01 - scripts/Add1 - NeuroBED_ML_loadResults.py", + "sha256": "01646d2b6dd22834ec495b1e1e7b174261942c5249d97043e94e85c7c775a7fa", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6772 + }, + { + "path": "NeuroBED_ML/analysis/04 - models/05 - miscellaneous/01 - confounderBaseline/NeuroBED_ML_confounderBaseline.py", + "sha256": "5b7bcec9caede6c01e3e70872438ca075e7c51f76687b4822fb3179d73514626", + "language": "Python", + "lines": 210, + "truncated": false, + "block": 9, + "row": 10273 + }, + { + "path": "NeuroBED_ML/analysis/04 - models/05 - miscellaneous/load_single_model.py", + "sha256": "4a670f6fe3664fc3cf2f8c3c0cc2722a8b7e7ac005b8e2f9c8f7e3a8eb0197e0", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 7799 + }, + { + "path": "NeuroBED_ML/analysis/05 - utils/LR_Cmaps.py", + "sha256": "c0509f645ae4d94198c2f25d490790d5dc70b871288fe30f776d6ad3b1a62657", + "language": "Python", + "lines": 532, + "truncated": false, + "block": 9, + "row": 12021 + }, + { + "path": "NeuroBED_ML/analysis/05 - utils/NeuroBED_ML_classifiers.py", + "sha256": "8b459d3c612786f015465fca3a6a2493a4a7e07c669ba5d68852774d1ec6990c", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 9, + "row": 9518 + }, + { + "path": "NeuroBED_ML/analysis/05 - utils/NeuroBED_ML_helpers.py", + "sha256": "215048af2c74713ca570f282bcf3abc8a6232d831c17eb8d92afb4e710a69af1", + "language": "Python", + "lines": 797, + "truncated": false, + "block": 9, + "row": 12166 + }, + { + "path": "NeuroBED_ML/analysis/06 - plotting/FIG 02 - ClassResults/scripts/A_plot_heatmap_target_modality.py", + "sha256": "1eb54652ce7e9a2a58b908c869f10da42fa9df92138fba4bf94123c3ed27da81", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 9, + "row": 10101 + }, + { + "path": "NeuroBED_ML/analysis/06 - plotting/FIG 02 - ClassResults/scripts/B_scoreX#modality.py", + "sha256": "cfee5cd39093b7b74020c37e70c7d66afbc29a51bb4eea846f4abfa6aa3323bf", + "language": "Python", + "lines": 228, + "truncated": false, + "block": 9, + "row": 10599 + }, + { + "path": "NeuroBED_ML/analysis/06 - plotting/FIG 02 - ClassResults/scripts/C1_class_splitviolin_bestsinglemulti.py", + "sha256": "cfad446df7764d7e6791ea1af96fcff83d54c115a508c04566296247b0e408f4", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 9, + "row": 9944 + }, + { + "path": "NeuroBED_ML/analysis/06 - plotting/FIG 02 - ClassResults/scripts/C2_delta_bACC.py.py", + "sha256": "81e9f06c3ddf091b719aa6650a5a07c23d596a8ab41318d4109af0b2723ea530", + "language": "Python", + "lines": 173, + "truncated": false, + "block": 9, + "row": 9997 + }, + { + "path": "NeuroBED_ML/analysis/06 - plotting/FIG 02 - ClassResults/scripts/D_confusion_matrix_grid.py", + "sha256": "b74c258f2048ac743a1e1e5057759d3da0256a007c1a71e7e79ca4434b963de5", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 9, + "row": 10989 + }, + { + "path": "NeuroBED_ML/analysis/06 - plotting/FIG 04 - RegrResults/scripts/A_regr_heatmap_targetXmod.py", + "sha256": "17cebcce96672032c2f9322c8ce01be9c807d7c47b526af394e264788e7aa88a", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 9, + "row": 9824 + }, + { + "path": "NeuroBED_ML/analysis/06 - plotting/FIG 04 - RegrResults/scripts/B_regr_split_violin_bestSinglevsMulti.py", + "sha256": "08e453d08a98848d886030b3adeda48fb4b8e9cb79e86cf8a01cc5c4655eb804", + "language": "Python", + "lines": 193, + "truncated": false, + "block": 9, + "row": 10418 + }, + { + "path": "NeuroBED_ML/analysis/06 - plotting/FIG 04 - RegrResults/scripts/C_regr_univariate_results_targetXgroup.py", + "sha256": "f24233668304b10f5b058714611fe75dd0789f1132a95210889c51937d221472", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 9, + "row": 10079 + }, + { + "path": "NeuroBED_ML/analysis/06 - plotting/FIG 04 - RegrResults/scripts/SM_FIG2_regr_heatmap_targetXgroupXmod.py", + "sha256": "42d730a90a679ec3b62cc2040e794929c7a9f348d139c24a285741704883ff92", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 9, + "row": 9844 + }, + { + "path": "NeuroBED_ML/analysis/06 - plotting/FIG SM01 - model0_SankeyJaccardViolin/A_NeuroBED_ML_SankeyPlot.py", + "sha256": "d3d1a3670abcf434a0c8f567ea9954c52b67bde385ca34d877170d6936d670ef", + "language": "Python", + "lines": 480, + "truncated": false, + "block": 9, + "row": 11845 + }, + { + "path": "NeuroBED_ML/analysis/06 - plotting/FIG SM01 - model0_SankeyJaccardViolin/B_Model0_CorrelationMatrices.py", + "sha256": "a028bc015bc1aafaf50c570ea9a6ff93d910b390f61d523421cc84d7f5b5d16d", + "language": "Python", + "lines": 635, + "truncated": false, + "block": 9, + "row": 12115 + }, + { + "path": "NeuroBED_ML/analysis/06 - plotting/FIG SM01 - model0_SankeyJaccardViolin/C_Jackard_plotting.py", + "sha256": "eb42f03ec008bf281693971f985450b486a52e6cd23ea84efa39d91f6a6d7f68", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 9, + "row": 10408 + }, + { + "path": "NeuroBED_ML/analysis/06 - plotting/FIG SM01 - model0_SankeyJaccardViolin/D_model0_RS_violinTop1.py", + "sha256": "fb68385576b84156b91b1fc79eb43e48d17677d1ad832017effed98ed0cc0eb2", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 9, + "row": 10076 + }, + { + "path": "NeuroBED_ML/analysis/06 - plotting/FIG SM01 - model0_SankeyJaccardViolin/split_heatmap.py", + "sha256": "4192238718bb9dbdf1b821bab53122f67e99f8cfbb532f5c5e2f41a7a6374365", + "language": "Python", + "lines": 185, + "truncated": false, + "block": 9, + "row": 10054 + }, + { + "path": "README.md", + "sha256": "fe5072e5e196f8e7720d03f69b82960c27791b6c0b0ff12c3eb7907f34a5a03a", + "language": "Text", + "lines": 69, + "truncated": false, + "block": 9, + "row": 14570 + } + ] +} \ No newline at end of file diff --git a/manifests/69/github.com__alleninstitute__cp_molecular_organization.json b/manifests/69/github.com__alleninstitute__cp_molecular_organization.json new file mode 100644 index 0000000000000000000000000000000000000000..eab3bec5cb0890d363523559df79e2f6bf7272a3 --- /dev/null +++ b/manifests/69/github.com__alleninstitute__cp_molecular_organization.json @@ -0,0 +1,453 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/alleninstitute/cp_molecular_organization", + "url": "https://github.com/AllenInstitute/CP_molecular_organization", + "host": "github.com", + "commit": "ebc2d9bfbdba4204f053112ea3671f7e11610437", + "license": "BSD-2-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "122c2f9f8be5d22a4e41cd7ea17968ae65b8f0a04a3b807a804f9aaf513091c8", + "language": "License", + "lines": 33, + "truncated": false, + "block": 6, + "row": 2024 + }, + { + "path": "README.md", + "sha256": "600fad4ea4b5c7884754f669b26f23f6a4003bf853622e3239b01b4f9faea57b", + "language": "Text", + "lines": 19, + "truncated": false, + "block": 9, + "row": 14498 + }, + { + "path": "scripts/.ipynb_checkpoints/Fig6c_chord-checkpoint.ipynb", + "sha256": "659935dd171fa1f93b01ef62964159eabf0a290e10fd5fe6ced49db5437c0cbc", + "language": "Jupyter", + "lines": 109, + "truncated": false, + "block": 9, + "row": 2266 + }, + { + "path": "scripts/ExtendedDataFig20_CPoutput_swc_quantification.py", + "sha256": "2afd4096432d5981c1a5ad5c7c71747830fc2d00032be3a2a307a9106b6ee37f", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 9, + "row": 10275 + }, + { + "path": "scripts/ExtendedDataFig20_CPoutputs_heatmap.py", + "sha256": "24adbff886b1090b088ddee4179c0c877244476a0d4fcab347bdb9d13e0cced9", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 9383 + }, + { + "path": "scripts/ExtendedDataFig20_cp_output_GPe_GPi_SNr_overlap.py", + "sha256": "d071476521d76455d35da8f453071529d2390975558a2b52193f44e0c5329c31", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 9, + "row": 9966 + }, + { + "path": "scripts/Fig2.py", + "sha256": "a1056f3738fea74fd0c9e17162362cba15d6ee33cd9f57a1b1d83d425296dcaf", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7640 + }, + { + "path": "scripts/Fig3_Fig4_Fig5_plot_injection_sites.py", + "sha256": "f801e4f0657a76c31b8ba222ee5c88bb486ca9eef57cd3ea4a2a3825a2c41509", + "language": "Python", + "lines": 320, + "truncated": false, + "block": 9, + "row": 10984 + }, + { + "path": "scripts/Fig3b_assign_hemispheres.py", + "sha256": "7bc2302c61768133f897c884d3b7762209babeb5ba88835ab492ca47c7f307aa", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6788 + }, + { + "path": "scripts/Fig3b_download_quantify.py", + "sha256": "307fefea8e9bb3b54b28d6ec175d69d073fca6f345e3efb8ebc776be56beeba9", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 9, + "row": 8861 + }, + { + "path": "scripts/Fig3b_plot_quantification.py", + "sha256": "1606174ce635bc88697b1a56c01c2b472f967a04a758677eaca9d003fd0bdadc", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 9, + "row": 10038 + }, + { + "path": "scripts/Fig3b_projection_summary_stats_multicore.py", + "sha256": "11446c6b710dd6d114000959fb25bbb5afec857db88ce0baa929aaa5da75d5cf", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 9, + "row": 9942 + }, + { + "path": "scripts/Fig3d_cortex_flatmap.py", + "sha256": "1df9226145b85a9ab49f09186406df41fb33ea149a88eecf33118cfdb52f38c7", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 9, + "row": 9627 + }, + { + "path": "scripts/Fig3d_swc_plot_singleneuron.py", + "sha256": "118a84225889b3d3bd2d88a34dee6ee83a2f35074e9e90acc53814ae591b2612", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 8132 + }, + { + "path": "scripts/Fig3g_anterograde_overlap.py", + "sha256": "f78363349a9e452c301d3adea6a8b9938ce513c56865c84d0721d6400ae86214", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 9364 + }, + { + "path": "scripts/Fig3g_plot_cortical_subcortical_overlap_heatmap.py", + "sha256": "9148fe5b98a5b371f40558459c35b254ace437aaa243614db2c6228153fe173b", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 9867 + }, + { + "path": "scripts/Fig3g_plot_overlap_heatmap.py", + "sha256": "9f1889c61f2a2b95835f5d56bd7ffb06af045ee2a68ced68acca28f83987168f", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 9377 + }, + { + "path": "scripts/Fig4_calculate_swc_arbor.py", + "sha256": "84e5657c028835e2ed083a1f8383fb0957ea0d29410cb772bcc023e6464dfa3c", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8477 + }, + { + "path": "scripts/Fig4_plot_swc_heatmap.py", + "sha256": "d3f17ecb21fd8d9ff4c4a5f852a42b8d7e8e8e1decf7c6da1a17f08415ba0c42", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 9, + "row": 8641 + }, + { + "path": "scripts/Fig4_swc_size_dispersion_scatterplot.py", + "sha256": "2e44909a47a9b421375d5751e3173870c33bd10789c7ff4e11e772d30efd3e30", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 7748 + }, + { + "path": "scripts/Fig4b_swc_projection_densities.py", + "sha256": "4c9076d90381994f222101399d26ae7c13ca839c48814bbb421fb690a75f5678", + "language": "Python", + "lines": 149, + "truncated": false, + "block": 9, + "row": 9381 + }, + { + "path": "scripts/Fig4c_swc_celltype_assignment.py", + "sha256": "b471faf547d14a59fce79ffe9ed0c7b555975d7995947294a2c3ab5781894b0c", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 9, + "row": 9890 + }, + { + "path": "scripts/Fig4d_swc_ipsi_contra_morphologies_plot.py", + "sha256": "6246e033d85a9809cccf22af0da5c15c3cd1dc88b7e984f383b9c24842203566", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 7809 + }, + { + "path": "scripts/Fig4e_swc_bilateral_percentage.py", + "sha256": "b01a235e51e121c5d0daca1ffcf04c0cc9e7d867db89cb5a423e953a8d120e63", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 8865 + }, + { + "path": "scripts/Fig5_plot_retrograde.py", + "sha256": "501b8d618a6b5c1ea8c3b76835e7d74f96d311ff84045127c8664028b1679ecd", + "language": "Python", + "lines": 225, + "truncated": false, + "block": 9, + "row": 10654 + }, + { + "path": "scripts/Fig6a_summary_diagram.py", + "sha256": "0fb3bf6fbbe8f33cc6690fad492926f439fe1220516cfc4c0531b5fbbea81a2d", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8284 + }, + { + "path": "scripts/Fig6c_chord.ipynb", + "sha256": "d6b0d1963b1053ab699c593bd5c66d3b9526dcefec82837b4402f9371b96fefd", + "language": "Jupyter", + "lines": 109, + "truncated": false, + "block": 9, + "row": 2265 + }, + { + "path": "scripts/SupplementaryTable1_Metadata.py", + "sha256": "26c89f84f6ecdde13bcf1549dad7acc227fb6e4df377aa0f8c7526861299d704", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 7655 + }, + { + "path": "scripts/SupplementaryTable3_assign_retrograde_subdivision.py", + "sha256": "17665ce668227bcb591c785d453b2089fa1f0332e8d4dba07313731b63f97567", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7119 + }, + { + "path": "scripts/_old/Fig2_combinatorial_boundaries.py", + "sha256": "811a273c5833fbc412d9799208373896a3cf2ef29f19680bd73f52ea846595a6", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 8920 + }, + { + "path": "scripts/_old/anterograde_overlap_layers.py", + "sha256": "a794f72da9e5968353af8c2dc74b308ace4b7ee1a5d70cbd13e6a7738c61ae7c", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 9, + "row": 9417 + }, + { + "path": "scripts/_old/combine_anterograde.py", + "sha256": "9c1c8166795beee1a20c82f915e734ff6b4fb2c4303c6c8cb412db80831d54bf", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7170 + }, + { + "path": "scripts/_old/download_quantify.py", + "sha256": "591f39034cfb404bba3a7b60d714ab9ba4df29d13ae392b110cdce0214b3d46b", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 8853 + }, + { + "path": "scripts/_old/filter_swcs.py", + "sha256": "1d43ca63788d97c6498dbb05d3cb14cb6bfc190a36ff1169641966c375e09b04", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7626 + }, + { + "path": "scripts/_old/flip_ccf_to_QW.py", + "sha256": "f95331bbdf820990d61b998f8be1e55796f60d0bf5ec08864c3beb9b1f24ac68", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7483 + }, + { + "path": "scripts/_old/get_volume_from_LIMS.py", + "sha256": "123815176a94bf8ffbb6b4391168efc3a273e9cf3117623d60a223f98de7f1de", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 8497 + }, + { + "path": "scripts/_old/plot_retrograde.py", + "sha256": "e66ce70d8dddd92ef81313a630f89bb82804fc9393c8a13fd329645a67a938d1", + "language": "Python", + "lines": 229, + "truncated": false, + "block": 9, + "row": 10667 + }, + { + "path": "scripts/_old/plot_subcortical_overlap_heatmap.py", + "sha256": "2252e7d3f11f1a101cd99e424867b6ba79a8e13d8877eb14c01ae75ab60e96b8", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9418 + }, + { + "path": "scripts/_old/shuffle_image.py", + "sha256": "946e738399303acef4c4d267762acebf473e7f4b52b42ce25c8a08dd37978707", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6809 + }, + { + "path": "scripts/_old/shuffle_xyz_image.py", + "sha256": "8801bbeac2b7c4725aa819a07e784161db923f6892580cd2ea95771010fc14fb", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7133 + }, + { + "path": "scripts/_old/swc_plot_projection_bymodule.py", + "sha256": "83bf155b5742ebf8217c620b7f729b4fbab25fb7a58e00e049ab3165d8d4a7df", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 7998 + }, + { + "path": "scripts/_old/swc_termination_plot.py", + "sha256": "e4820f98d27773b9ef3ba127ab278a4f93c87b6d44eec773007786369e7b4fc2", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 7804 + }, + { + "path": "scripts/generate_dictionaries.py", + "sha256": "cc5284327ccc0e7d0c100ff8ad891615ae43566ba87ac3758807a5981c4808ca", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 9257 + }, + { + "path": "scripts/generate_subdivision_lookup.py", + "sha256": "702881c40e3c1185d6a689d26c10c1a26b0412661d4e82eaf4341a5e0245dbc8", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7041 + }, + { + "path": "scripts/make_fineres_hist_ai21_cpq.py", + "sha256": "42f900541989b1f58502192cd55c8b0fcf6149f4338fa6223359efc99fb60ec5", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 9, + "row": 10544 + }, + { + "path": "scripts/spatial_pattern_figures.ipynb", + "sha256": "aa0a574ed89c5dbede9e128627366145e5ea7b8b161c82456585b30787f936e6", + "language": "Jupyter", + "lines": 926, + "truncated": false, + "block": 9, + "row": 2687 + }, + { + "path": "scripts/swc_plot_terminals.ipynb", + "sha256": "361a3bd5e30dd6a9085fe0258ab080ff5ca2e50d94e3249cc94071c5188fccf4", + "language": "Jupyter", + "lines": 124, + "truncated": false, + "block": 9, + "row": 2316 + }, + { + "path": "scripts/swc_termination_point_volume.ipynb", + "sha256": "f536ba431a276a8c77a982a6094e671cc8a056e22570ff63d422ee06fb758af7", + "language": "Jupyter", + "lines": 123, + "truncated": false, + "block": 9, + "row": 2339 + }, + { + "path": "src/swc_tools.py", + "sha256": "6a4bc81375efdbe75c076a600e19ec469617e648cd8e9f2abf4fbfa5eb71e9f2", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 9, + "row": 8973 + } + ] +} \ No newline at end of file diff --git a/manifests/69/github.com__ding-group__protocloud.json b/manifests/69/github.com__ding-group__protocloud.json new file mode 100644 index 0000000000000000000000000000000000000000..674a6318e0cdc0d14d0acc1c5651b3b9ba3730bf --- /dev/null +++ b/manifests/69/github.com__ding-group__protocloud.json @@ -0,0 +1,192 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ding-group/protocloud", + "url": "https://github.com/Ding-Group/ProtoCloud", + "host": "github.com", + "commit": "90c2678f9ce54e1e9911bd1aa5086c63a7798d89", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "783924bc69b7e22bd8d759f1f23a1e27d517bdaf28d96f8a4356a2462ff4e5b1", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2766 + }, + { + "path": "README.md", + "sha256": "76e9065822a2b06f8abfc9c1c588de3728d189f67d9764a9c854c27c0bf9ef67", + "language": "Text", + "lines": 109, + "truncated": false, + "block": 9, + "row": 14618 + }, + { + "path": "main.py", + "sha256": "9baf54aea08b26b73f35df074b8dd5de97e773da803d38e177877ed9adbc1af4", + "language": "Python", + "lines": 524, + "truncated": false, + "block": 9, + "row": 12075 + }, + { + "path": "src/ProtoCloud/__init__.py", + "sha256": "72bafd1b9dc30ea5ba3cd47190682c0a44c3eb30c97d0f00672dd9e88cbac3b2", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 10085 + }, + { + "path": "src/ProtoCloud/api.py", + "sha256": "b5932159e62bd3e05d8c5562d44e8082205cabacd005c430418c4266ab294ae1", + "language": "Python", + "lines": 603, + "truncated": false, + "block": 9, + "row": 11981 + }, + { + "path": "src/ProtoCloud/data/__init__.py", + "sha256": "ea021e2772c67aa5057eee319deabab2e53a05bc625811fbc6f4e3dfa0a02723", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6409 + }, + { + "path": "src/ProtoCloud/data/scRNAdata.py", + "sha256": "ccf604afbc4ad57ee4fe29a8b0efaa07886023980f7038ab12d35351cb30d1a3", + "language": "Python", + "lines": 664, + "truncated": false, + "block": 9, + "row": 12109 + }, + { + "path": "src/ProtoCloud/glo.py", + "sha256": "6f5ea73ae132dfae704df1b9067a42b2833b64a3fae28d21eee83a9441087b68", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6584 + }, + { + "path": "src/ProtoCloud/model/__init__.py", + "sha256": "93f7af39412ffa2db1b4ac3c7467e7bd6ee5a22cb3e6d64ba50f3f7d7758163a", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 7086 + }, + { + "path": "src/ProtoCloud/model/calibrator.py", + "sha256": "5b8f4c6676812be3e02c0a68422792f409933100c98c31602a96215b8fcfa659", + "language": "Python", + "lines": 279, + "truncated": false, + "block": 9, + "row": 10810 + }, + { + "path": "src/ProtoCloud/model/model.py", + "sha256": "14a7ae9bdeeea9c77cf105411d06f90a491d4742b3b0db28052c8e07b95012f7", + "language": "Python", + "lines": 867, + "truncated": false, + "block": 9, + "row": 12291 + }, + { + "path": "src/ProtoCloud/model/train.py", + "sha256": "7686466d0cdc1cd7461fbc6c332ac45da4c77b10b32d67567afa17de83d01705", + "language": "Python", + "lines": 539, + "truncated": false, + "block": 9, + "row": 11718 + }, + { + "path": "src/ProtoCloud/prp/__init__.py", + "sha256": "d0d1e12ad8c8cef5d350854d674f905177ef1aebffeafa48723e1b15a2438049", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 8442 + }, + { + "path": "src/ProtoCloud/prp/lrp.py", + "sha256": "3665c1e8c626d5e0630fabe1255952274f0df6671491f8ae02bf7141ea0436f1", + "language": "Python", + "lines": 502, + "truncated": false, + "block": 9, + "row": 11834 + }, + { + "path": "src/ProtoCloud/prp/lrp_general.py", + "sha256": "5b416cb2c164da6919f815fe110046b629997d59bb521db44dce21e39eed91da", + "language": "Python", + "lines": 896, + "truncated": false, + "block": 9, + "row": 12285 + }, + { + "path": "src/ProtoCloud/utils/__init__.py", + "sha256": "256003a02fb66249c41670f1ed74ad40780d4389784b9164a1836373d3fa064b", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 7670 + }, + { + "path": "src/ProtoCloud/utils/utils.py", + "sha256": "0441676e9c5b413685022550ff475cf37557bcf6ef3bcd8d8efd73d65c21e21e", + "language": "Python", + "lines": 550, + "truncated": false, + "block": 9, + "row": 11698 + }, + { + "path": "src/ProtoCloud/viz/__init__.py", + "sha256": "f9077cee0514de07c392aecc8f25043462b4dba7e6431a4707bc2baf2e51cc13", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 7614 + }, + { + "path": "src/ProtoCloud/viz/plot.py", + "sha256": "e1a1015609029127b36e06501ed1f7339cb8caeb87d93726efa90216992ca6e4", + "language": "Python", + "lines": 1062, + "truncated": false, + "block": 9, + "row": 12412 + }, + { + "path": "tutorial/api_tutorial.ipynb", + "sha256": "b5c4f76f3e7dbe08652577b2085a37a839a661c3cf8e67e270f95a2509873d9f", + "language": "Jupyter", + "lines": 411, + "truncated": false, + "block": 9, + "row": 2574 + } + ] +} \ No newline at end of file diff --git a/manifests/69/github.com__ef-lab__ethopy_plugins.json b/manifests/69/github.com__ef-lab__ethopy_plugins.json new file mode 100644 index 0000000000000000000000000000000000000000..987a64fa926eb84694feec51127e576b45919ca7 --- /dev/null +++ b/manifests/69/github.com__ef-lab__ethopy_plugins.json @@ -0,0 +1,300 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ef-lab/ethopy_plugins", + "url": "https://github.com/ef-lab/ethopy_plugins/", + "host": "github.com", + "commit": "d7e08e3e140e7177352edde9ae9268b06749a560", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Bpod/event_detect.py", + "sha256": "5f9f4392b774ddf6a437ed9731f817808ca5fdcdb4d56a10396e2f0bbf50c212", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 9, + "row": 10209 + }, + { + "path": "Bpod/interfaces/BpodPorts.py", + "sha256": "de8f875d6cc2c44931988241980722631b9aa2db3b28083993b72affefc1547a", + "language": "Python", + "lines": 568, + "truncated": false, + "block": 9, + "row": 11915 + }, + { + "path": "Bpod/tasks/bpod_calibration.py", + "sha256": "afea36049ffcde0e9217dcb917e536b1ef4f051faf8cae808dd89c82ad0dee11", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 6967 + }, + { + "path": "Bpod/tasks/grating_test.py", + "sha256": "fca3c353d6de362bc22ed6ea85eeeb908bfcb4d5bd6a3ab270dc260b6bf78f81", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 7945 + }, + { + "path": "Bpod/user_settings.py", + "sha256": "fddac1e59bddb7b7c909ce5352dbe0b32312ee732f8385fb71742df4cea47eb3", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6672 + }, + { + "path": "LICENSE", + "sha256": "b5a45f38581197c1f310f50fcaa734a8191ea9106c2658aa88e1715419aa9fe7", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2752 + }, + { + "path": "README.md", + "sha256": "c2bae8d89f342f91746c05853ab0f5fb894842f7647e9d51c294ee66f39bdcdc", + "language": "Text", + "lines": 108, + "truncated": false, + "block": 9, + "row": 14591 + }, + { + "path": "objects_panda/experiments/match_to_sample.py", + "sha256": "2ae0fa5c4dc96ab003700d8b60b62833501ac3c92de680b7cd876adf3687068e", + "language": "Python", + "lines": 355, + "truncated": false, + "block": 9, + "row": 10892 + }, + { + "path": "objects_panda/stimuli/panda.py", + "sha256": "d9a75f266b5b1cd4aada291d7c9e437784a8a1e4ce7d2de380dfe6cd346274db", + "language": "Python", + "lines": 490, + "truncated": false, + "block": 9, + "row": 11567 + }, + { + "path": "objects_panda/task/panda_test.py", + "sha256": "fb91e4fd6770358f0ee77a441244607bac8d8c57e88153cf386a7627cdb7f7f3", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 9, + "row": 9378 + }, + { + "path": "objects_panda/upload_objects.py", + "sha256": "38928ac93624ac84d9abf4ee5c4e07e3c0a265b31a33b3b5a3590b582ca70ad2", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 7576 + }, + { + "path": "openfield/behaviors/openfield.py", + "sha256": "cb4dced3f86dc283f2827c29f63f0a4f961c593d7778c6b465e3f8eab387cb50", + "language": "Python", + "lines": 474, + "truncated": false, + "block": 9, + "row": 11716 + }, + { + "path": "openfield/experiments/approach.py", + "sha256": "57bc018dc26532e401613481d29112d3d3c6d5f240c1ae1c94e82173558a37dd", + "language": "Python", + "lines": 314, + "truncated": false, + "block": 9, + "row": 10662 + }, + { + "path": "openfield/stimuli/panda.py", + "sha256": "6c91efc55bfc1f31ff6cd5c6232766d4929d86620c002ec0e45e8c4c237938b7", + "language": "Python", + "lines": 654, + "truncated": false, + "block": 9, + "row": 12007 + }, + { + "path": "openfield/task/openfield_task.py", + "sha256": "7d27fc69fa98350137e2de73408534389e2fe3db24e6b65c28daac035fa7dce0", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 9, + "row": 8249 + }, + { + "path": "openfield/upload_objects.py", + "sha256": "38928ac93624ac84d9abf4ee5c4e07e3c0a265b31a33b3b5a3590b582ca70ad2", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 7576 + }, + { + "path": "openfield/utils/export/add_dlc_nwb.py", + "sha256": "c0a7aed1dcaefa4805bc75186022319c559b306ce68cd7d1f8b0b9cfce93d0ea", + "language": "Python", + "lines": 306, + "truncated": false, + "block": 9, + "row": 11068 + }, + { + "path": "openfield/utils/export/add_video_nwb.py", + "sha256": "eff9585efd96d493cc03d8066cd1db758f4c6a96dd510fda45434220df36e909", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 8008 + }, + { + "path": "psychopy/experiments/match_to_sample.py", + "sha256": "4a892261634e2aee0e191332595449e3070292108e8f22da7d1663fdb028f12f", + "language": "Python", + "lines": 358, + "truncated": false, + "block": 9, + "row": 10901 + }, + { + "path": "psychopy/stimuli/psycho_grating.py", + "sha256": "cb5c3db4da0f30cb318f6013d1cd2de7b1e4052a2aee3824cdafb31d5988e355", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 9219 + }, + { + "path": "psychopy/stimuli/psycho_presenter.py", + "sha256": "b4a6863fc06c254030947fc3963b946163f9442fa341cd98abe825130b5ce84b", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 9, + "row": 9429 + }, + { + "path": "psychopy/task/psychopy_test.py", + "sha256": "82b24711096483689e135843f72cfc9dfbd751afb67a79b5a1705d2c9623c94a", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 9, + "row": 8403 + }, + { + "path": "spherical_treadmill/behaviors/vr_ball.py", + "sha256": "0d1525f201d76c1b5ba37ade6b81c073d197515d22ddd2ec29d3c2152ec686ad", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 9, + "row": 9106 + }, + { + "path": "spherical_treadmill/experiments/navigate.py", + "sha256": "7c549cad3ef2e91436d2c0d93c08cd8bc27dc9a498208f1a9cd8457153b655f6", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 9, + "row": 9634 + }, + { + "path": "spherical_treadmill/stimuli/olfactory.py", + "sha256": "06fac86a0b47aac6ffc195fd91c0aab31e72800a604894e98a97a1fae4420a92", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7883 + }, + { + "path": "spherical_treadmill/stimuli/vr_odors.py", + "sha256": "5b7eb8255ad544437f608e2f211e7f20c344102d9568711b50fa85c6a2ad116a", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 8148 + }, + { + "path": "spherical_treadmill/task/ball_test.py", + "sha256": "2738fe0182d11ecd291983e7c3d2606e5c104e015cf68c81a66c66fb0e277fcd", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7815 + }, + { + "path": "spherical_treadmill/utils/export/add_treadmill_nwb.py", + "sha256": "42ddd4b3eb4bcab60528d19db255d40f451d2f33547cac7fa538f327fbec5525", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 9, + "row": 9188 + }, + { + "path": "tone_grating/stimuli/tones.py", + "sha256": "560b480f7e8111799c23741e7399e667e46edd9e82d5ee553600d9cd20b6c872", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7844 + }, + { + "path": "tone_grating/stimuli/tones_grating.py", + "sha256": "44a5a7baebfb965641cef4b956b2196092651bd8f0370b04eb6ac89e505c5be8", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8901 + }, + { + "path": "tone_grating/task/tones_grating_test.py", + "sha256": "ec3a5b5c533e7dba86bf636a09a3c7d93ae3f787d667cb8d66472d59ad2e7fa5", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 9372 + }, + { + "path": "tone_grating/task/tones_test.py", + "sha256": "5a2c6419316d797f42038ec499982e99be797d8f05a2631f08c32308e182feca", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8803 + } + ] +} \ No newline at end of file diff --git a/manifests/69/github.com__mouse-imaging-centre__minc-stuffs.json b/manifests/69/github.com__mouse-imaging-centre__minc-stuffs.json new file mode 100644 index 0000000000000000000000000000000000000000..ea8c0cc2a9e043725f7c107f550e86f35dea9aa0 --- /dev/null +++ b/manifests/69/github.com__mouse-imaging-centre__minc-stuffs.json @@ -0,0 +1,174 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/mouse-imaging-centre/minc-stuffs", + "url": "https://github.com/Mouse-Imaging-Centre/minc-stuffs/blob/master/src/object_volume_dot_product.c", + "host": "github.com", + "commit": "0bfb834896e91a540774607ca7817ca8fcf41573", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file COPYING", + "redistribution": "yes", + "files": [ + { + "path": "COPYING", + "sha256": "815211a995b51acbd6ad2209d8d5b229d57d96406ba26e480c4b7f45a9524fa1", + "language": "License", + "lines": 24, + "truncated": false, + "block": 9, + "row": 2877 + }, + { + "path": "README.md", + "sha256": "157809f9495488aa41e52c15b1052df0afb4d15c6b0da2ccca57c869884f16d2", + "language": "Text", + "lines": 52, + "truncated": false, + "block": 9, + "row": 14516 + }, + { + "path": "autogen.sh", + "sha256": "14cde2e4a758e885c93d1aec82543c527c5a9613941d0b4d0dee1e2962d62a43", + "language": "Shell", + "lines": 8, + "truncated": false, + "block": 9, + "row": 13894 + }, + { + "path": "perl/atlas_to_atlas.pl", + "sha256": "f5ac0d1544adc93fa01ef0647e73f295d084102296bdad4c871064d67027aa14", + "language": "Perl", + "lines": 60, + "truncated": false, + "block": 9, + "row": 6049 + }, + { + "path": "perl/make_xfm_for_grid.pl", + "sha256": "6dd6640430d3b8ed2f4b31ccc95f5e25e3c68a17e44174b9add02bf7bdc2be91", + "language": "Perl", + "lines": 47, + "truncated": false, + "block": 9, + "row": 6041 + }, + { + "path": "python/compute_determinant.py", + "sha256": "e59629ca24b248d0846eb474375b08a8d8a99140852176fe96e9908721d1a938", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 9, + "row": 10512 + }, + { + "path": "python/rotational_minctracc.py", + "sha256": "fe775b0710039df321adcc915b52f427ac6670de5be7754c743872689af06421", + "language": "Python", + "lines": 437, + "truncated": false, + "block": 9, + "row": 11970 + }, + { + "path": "python/vtk_meshconvert.py", + "sha256": "c4a127f752775146f426b38ea9c400eeaa05577f6f02cc8711d1a63ad8a8d63f", + "language": "Python", + "lines": 300, + "truncated": false, + "block": 9, + "row": 10828 + }, + { + "path": "setup.py", + "sha256": "e07a983bd47530bbf34788cf37cb53d4f8ac25bcad0839433c0781c3b845859c", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6795 + }, + { + "path": "src/ParseArgv.c", + "sha256": "b0f4ab1e992b72d4e325d9f41daba34714e2fce1a5fe5367ddbc0941b79b458d", + "language": "C", + "lines": 419, + "truncated": false, + "block": 9, + "row": 126 + }, + { + "path": "src/ParseArgv.h", + "sha256": "a05e728ac302a4492069eab324ea42befe81192e639a75309999c351f2bc2dab", + "language": "C/C++", + "lines": 83, + "truncated": false, + "block": 9, + "row": 1344 + }, + { + "path": "src/compute_counts_for_labels.c", + "sha256": "277d405518640acbc80436721513ecaf9de21d984840c13d43cdabc101df14b0", + "language": "C", + "lines": 141, + "truncated": false, + "block": 9, + "row": 57 + }, + { + "path": "src/label_volumes_from_jacobians.c", + "sha256": "78dacf5ed610c5a65a5c22892b8096deff3edbfafe829cef983aca60f3cce286", + "language": "C", + "lines": 132, + "truncated": false, + "block": 9, + "row": 38 + }, + { + "path": "src/minc_displacement.c", + "sha256": "d2c425b2bc0bd08343a336a19e2a38a647b18aee58a145ad885f82b6d71736d5", + "language": "C", + "lines": 178, + "truncated": false, + "block": 9, + "row": 68 + }, + { + "path": "src/object_volume_dot_product.c", + "sha256": "8c7189ea77c040ffb6a9aa6f838e2e9953e079bcbd41c27277c4684eb2007081", + "language": "C", + "lines": 87, + "truncated": false, + "block": 9, + "row": 27 + }, + { + "path": "src/tagtoxfm.c", + "sha256": "c07e3d7d05eca2e565886fe662d4929a9b35d15a4cdd65bdcc5946b073f9bd7a", + "language": "C", + "lines": 189, + "truncated": false, + "block": 9, + "row": 75 + }, + { + "path": "src/tagtoxfm.h", + "sha256": "69d2a09493ee9696af7aeea797fce9a80871c5800ab25520867bc6bbe1861d98", + "language": "C/C++", + "lines": 58, + "truncated": false, + "block": 9, + "row": 1321 + }, + { + "path": "src/xfm2tag.c", + "sha256": "7411a5fa52692baae622975b5ae666b3d5f88cc41355adaabefdb1aab7a5d2af", + "language": "C", + "lines": 138, + "truncated": false, + "block": 9, + "row": 49 + } + ] +} \ No newline at end of file diff --git a/manifests/69/github.com__zhiyuzheng1769__mt-and-permeability-effect-on-two-compartment-dmri-wm-model.json b/manifests/69/github.com__zhiyuzheng1769__mt-and-permeability-effect-on-two-compartment-dmri-wm-model.json new file mode 100644 index 0000000000000000000000000000000000000000..e8f0a68a496c82bbb7dbfbf221c9f38eeabf81fb --- /dev/null +++ b/manifests/69/github.com__zhiyuzheng1769__mt-and-permeability-effect-on-two-compartment-dmri-wm-model.json @@ -0,0 +1,210 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/zhiyuzheng1769/mt-and-permeability-effect-on-two-compartment-dmri-wm-model", + "url": "https://github.com/zhiyuzheng1769/MT-and-permeability-effect-on-two-compartment-dMRI-WM-model/tree/main", + "host": "github.com", + "commit": "65bfa230be49fcb472cc9325a81efaf8876d7772", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": ".virtual_documents/fixed_diameter/Permeability figures.ipynb", + "sha256": "d62e358267a9372fb91b6008cbc8bfef8801e703cd0d46ee29774bc24e7d2d3e", + "language": "Jupyter", + "lines": 238, + "truncated": false, + "block": 9, + "row": 2478 + }, + { + "path": "Example_simulation.ipynb", + "sha256": "6300cbd02627d9301194800ad78c3de4080eda2cb4cb759c2037a97a2c60b263", + "language": "Jupyter", + "lines": 194, + "truncated": false, + "block": 9, + "row": 2600 + }, + { + "path": "LICENSE", + "sha256": "4f8e1e548404b1c7414158ba8fe26f91b81d2c2362409bc3a415bc167b687940", + "language": "License", + "lines": 201, + "truncated": false, + "block": 9, + "row": 2903 + }, + { + "path": "README.md", + "sha256": "3f3fee03019554c7d596bf1c79909df1769bb898132cc850967ef61bd1a728d3", + "language": "Text", + "lines": 14, + "truncated": false, + "block": 9, + "row": 14530 + }, + { + "path": "distributed_diameter/MT figures.ipynb", + "sha256": "833b4f6d3f47dcf69591b1550faa19c850f25d003e9eb946a0e4b9c5f00467e6", + "language": "Jupyter", + "lines": 90, + "truncated": false, + "block": 9, + "row": 2279 + }, + { + "path": "distributed_diameter/Permeability figures.ipynb", + "sha256": "0461c254a68e6e07bfadfe6c9e6d4edb06879d5b9092445e5bd805bfb859887d", + "language": "Jupyter", + "lines": 108, + "truncated": false, + "block": 9, + "row": 2323 + }, + { + "path": "distributed_diameter/create_distributed_cylinders.ipynb", + "sha256": "6042c52cc8aa67c49caaf26be249f936f921331ed4459bd771ab27d968c19223", + "language": "Jupyter", + "lines": 43, + "truncated": false, + "block": 9, + "row": 2314 + }, + { + "path": "distributed_diameter/local_optim_fit.py", + "sha256": "dc30f21835b157db33c45925826fcfbe0087f21552369001cf9bfe007c6e7028", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 9572 + }, + { + "path": "distributed_diameter/run_mt_sims.sh", + "sha256": "37c9985f023f3d3f7e3e6c27d6498b1b8a1171bfafa09473d5c27188ba84d763", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 9, + "row": 14038 + }, + { + "path": "distributed_diameter/run_perm_sims.sh", + "sha256": "25413f52aada0ca056db5145af3146279013a7a0d3099c18224f021b30789dd2", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 9, + "row": 14049 + }, + { + "path": "distributed_diameter/simulate_mt.jl", + "sha256": "efb0f12a60f0ae96452edeb25486d7b6f7a7d4cc6c71dc4f5093c0e1adf742b3", + "language": "Julia", + "lines": 94, + "truncated": false, + "block": 9, + "row": 2152 + }, + { + "path": "distributed_diameter/simulate_permeability.jl", + "sha256": "5f6114bcf89d79ec8c70cfde9b167c9f90c0c8d81fbddb1b42b2fd2b25d3d1bd", + "language": "Julia", + "lines": 93, + "truncated": false, + "block": 9, + "row": 2154 + }, + { + "path": "fixed_diameter/MT figures.ipynb", + "sha256": "df56e00a02391f9fbaf9fe1137b20b171c2ab2d41805bb0e41edcf665a36eea5", + "language": "Jupyter", + "lines": 121, + "truncated": false, + "block": 9, + "row": 2349 + }, + { + "path": "fixed_diameter/Permeability figures.ipynb", + "sha256": "da8b88dbe566a56531c9087836ef5cdf1b91b29ed1ee105be6b0519eb0ac2b1a", + "language": "Jupyter", + "lines": 244, + "truncated": false, + "block": 9, + "row": 2508 + }, + { + "path": "fixed_diameter/create_cylinders.ipynb", + "sha256": "3baee778422206c2b38628671b06484e837401be7b320b5618fce06d2cc8c75d", + "language": "Jupyter", + "lines": 50, + "truncated": false, + "block": 9, + "row": 2315 + }, + { + "path": "fixed_diameter/local_optim_fit.py", + "sha256": "c98bfb522cd237a6beae40406c77d1f9e9b979c1e931a45811b30fdd375cf218", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 9566 + }, + { + "path": "fixed_diameter/run_mt_sims.sh", + "sha256": "b8b7cdaa6b8d0b3aec8f59bbcdc82beec798fc25ce16b15e4e22918b352f7517", + "language": "Shell", + "lines": 18, + "truncated": false, + "block": 9, + "row": 14087 + }, + { + "path": "fixed_diameter/run_perm_sims.sh", + "sha256": "0aff9e5fa4d3497f36c8784c7bd3136fac3d6014787dd007cf10afbd9afbc693", + "language": "Shell", + "lines": 18, + "truncated": false, + "block": 9, + "row": 14095 + }, + { + "path": "fixed_diameter/simulate_mt.jl", + "sha256": "613f6085030cf17561bb3351e3d10fb401ad3631c31f8b7d9ac8462e8b9a5021", + "language": "Julia", + "lines": 95, + "truncated": false, + "block": 9, + "row": 2153 + }, + { + "path": "fixed_diameter/simulate_permeability.jl", + "sha256": "ed31c5e1e34756f481023fe4a6529a619aae410286f28e3ae78274dde7cafa7f", + "language": "Julia", + "lines": 92, + "truncated": false, + "block": 9, + "row": 2155 + }, + { + "path": "repel_cylinders.jl", + "sha256": "9d701c471656fa47aee761781ed4549044972b72fe853a977f04779c9081a487", + "language": "Julia", + "lines": 133, + "truncated": false, + "block": 9, + "row": 2156 + }, + { + "path": "simplified_dmipy.py", + "sha256": "39508a36bdecfdf4e3f5a354a4ded19e30c90250ac392f44d006e264d553e19c", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8344 + } + ] +} \ No newline at end of file diff --git a/manifests/69/zenodo__18679923.json b/manifests/69/zenodo__18679923.json new file mode 100644 index 0000000000000000000000000000000000000000..f4dc3dc218746fbfb4d39a5699f1c9768fd0f02f --- /dev/null +++ b/manifests/69/zenodo__18679923.json @@ -0,0 +1,1083 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18679923", + "url": "https://zenodo.org/records/18679923", + "host": "zenodo.org", + "commit": "", + "license": "CC0-1.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "EEG_LFP_preprocess/EEGep_wav_ds.m", + "sha256": "44fa221b9c91f79153bc8dbf3d08b05fb0920d85d0dd6ba2e2c618a336f7f179", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 4053 + }, + { + "path": "EEG_LFP_preprocess/PD_ssrt_EEG_LFP_prerocess_MAIN.m", + "sha256": "f663275aef0ab2595fd6ea32db1f8cb403ef4579adbbb81be65be448df9c9eb6", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4284 + }, + { + "path": "EEG_LFP_preprocess/behav_events.m", + "sha256": "ae657e1f05c8ae23968497d5535f366fe0b81e88a3c25a3b7e9c3e937251ae56", + "language": "MATLAB", + "lines": 95, + "truncated": false, + "block": 9, + "row": 4759 + }, + { + "path": "EEG_LFP_preprocess/load_intraoplfp.m", + "sha256": "e509f1c0f536faa2a09167f6407b33237f0340d0f999208b9a8ea06e270f928b", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 4018 + }, + { + "path": "EEG_LFP_preprocess/prep_epochs.m", + "sha256": "1030d8ee0fa9030fe3d9151621dcca8c4974b7ac1079bc860c5d398bcb79fed3", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 4170 + }, + { + "path": "EEG_LFP_preprocess/preprocess_PD.m", + "sha256": "aaae7969230936b79967958c46ff8878942536f3ef80186bcbe9b7374c51a330", + "language": "MATLAB", + "lines": 689, + "truncated": false, + "block": 9, + "row": 5845 + }, + { + "path": "EEG_LFP_preprocess/save_evinxx.m", + "sha256": "48f646f5d9f47c6ae2233ef56fdbe5855dda42e082874971937a8dbfaeeaef82", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 9, + "row": 4382 + }, + { + "path": "EEG_LFP_time_freq/ERSP_plot_stat.m", + "sha256": "4e0e6886d19bd7039fab87efb885ff5690472dddb53ae8f5f95ff07f8d31e41d", + "language": "MATLAB", + "lines": 1302, + "truncated": false, + "block": 9, + "row": 5973 + }, + { + "path": "EEG_LFP_time_freq/PD_eeg_stats.m", + "sha256": "34d176fa77b7fd18557f79963ea384629eaeccd578e8f6f050cccf74c911e450", + "language": "MATLAB", + "lines": 1555, + "truncated": false, + "block": 9, + "row": 5981 + }, + { + "path": "EEG_LFP_time_freq/PD_ssrt_EEG_LFP_time_freq_MAIN.m", + "sha256": "80fc84d06255892b1674bf185e56ad987c16fae95ed7d6ef6f29c41cacc53782", + "language": "MATLAB", + "lines": 190, + "truncated": false, + "block": 9, + "row": 5327 + }, + { + "path": "EEG_LFP_time_freq/PD_wav.m", + "sha256": "cbd9e973158467b1911280b302c412acac60c6b41729c2ea6d32355c9d3da9c3", + "language": "MATLAB", + "lines": 146, + "truncated": false, + "block": 9, + "row": 4967 + }, + { + "path": "EEG_LFP_time_freq/TFpower_map_RT.m", + "sha256": "27036f5d86e5c65982f2e677ed380c2f2ce70d95e4996d74b8626f61fde86497", + "language": "MATLAB", + "lines": 1025, + "truncated": false, + "block": 9, + "row": 5893 + }, + { + "path": "EEG_LFP_time_freq/boostat_eeglab_J.m", + "sha256": "31c0e62734ed91e715ae24086db38e7ac6e27808d2f37ffad1e7825641d55597", + "language": "MATLAB", + "lines": 149, + "truncated": false, + "block": 9, + "row": 4917 + }, + { + "path": "EEG_LFP_time_freq/eegwavelet2.m", + "sha256": "a447c460dcc24d622a8fd3d4b33b31bd03e9149917ca41f5656cc203a391d824", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3756 + }, + { + "path": "EEG_LFP_time_freq/find_dominant_freq_bands.m", + "sha256": "d08e1de39d240c8f668a275cf90396a2e159cbf3b546b6e68b8b8ece1c4964c5", + "language": "MATLAB", + "lines": 153, + "truncated": false, + "block": 9, + "row": 5229 + }, + { + "path": "EEG_LFP_time_freq/load_TFblocks.m", + "sha256": "6fe421a6c42f7de4c5dfde955adb14358ede2f94efd9cd6f3204eead0b5d0ae6", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 4481 + }, + { + "path": "EEG_LFP_time_freq/set_my_topo.m", + "sha256": "68dfe039697abab8b7587b1193ffcbb294024c6ca473dbfb1a857039004ebdba", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3348 + }, + { + "path": "EEG_LFP_time_freq/spectr_fig.m", + "sha256": "171ecc3cf08e5159e355ebe7203e373da413b33300a31b0a872cfcf56db9cb38", + "language": "MATLAB", + "lines": 172, + "truncated": false, + "block": 9, + "row": 5021 + }, + { + "path": "EEG_LFP_time_freq/time_freq_patients.m", + "sha256": "a74500eafe694dc455f0628d3229f487ab5dcb32ebe4e9a12098c5074a1ccc07", + "language": "MATLAB", + "lines": 725, + "truncated": false, + "block": 9, + "row": 5862 + }, + { + "path": "EEG_LFP_time_freq/topoplot_fig.m", + "sha256": "8a85f7fb1f311fdc0a861369c2a68e7a72f3ddf6a966a9acf865915aa7cbd52d", + "language": "MATLAB", + "lines": 97, + "truncated": false, + "block": 9, + "row": 4514 + }, + { + "path": "EEG_LFP_wav_coherence/EEG_LFP_ETA_PD.m", + "sha256": "7a4267c24d3ad34db7c41880462036fa7ba5da9a599e7fb39979feaa75ae0f17", + "language": "MATLAB", + "lines": 496, + "truncated": false, + "block": 9, + "row": 5729 + }, + { + "path": "EEG_LFP_wav_coherence/EEG_LFP_Wcoh_PD.m", + "sha256": "e576a815ef57d18e272f5106245d912eca8083e4d9e3b6fb35db0b24c3acf87f", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 9, + "row": 4409 + }, + { + "path": "EEG_LFP_wav_coherence/EEG_LFP_Wcoh_compare_partitions.m", + "sha256": "6ee3ad157500cbb8507e4e99ddb9e9144c8b0260f12e634344b498376ab9247e", + "language": "MATLAB", + "lines": 346, + "truncated": false, + "block": 9, + "row": 5575 + }, + { + "path": "EEG_LFP_wav_coherence/PD_EEG_LFP_wav_coherence_MAIN.m", + "sha256": "a3b4a269f12f558709165e41751eac22de003aed910fd7ae40f5d3293dda54d7", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3935 + }, + { + "path": "EEG_LFP_wav_coherence/get_patient_wcoh.m", + "sha256": "579e492b48517fcf0ae72d41c598336157c534e1db071683f6b250ecee635d0f", + "language": "MATLAB", + "lines": 135, + "truncated": false, + "block": 9, + "row": 5093 + }, + { + "path": "EEG_LFP_wav_coherence/wcoh_avg.m", + "sha256": "681dbd6d93a2311f71d2ac77c76b54dcdc1e0e8c5869fbc799d35f55ea907d97", + "language": "MATLAB", + "lines": 306, + "truncated": false, + "block": 9, + "row": 5581 + }, + { + "path": "EEG_LFP_wav_coherence/wcoh_fig.m", + "sha256": "0f775528672d9515598d810cd7586351af6e7ab6dd922e09db6525be6d780ddc", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 3749 + }, + { + "path": "EEG_LFP_wav_coherence/wcoh_map_RT.m", + "sha256": "854ff715c09ce3c57a30641d5e0fe08b6b5eff64128cb542c150340b7ec99095", + "language": "MATLAB", + "lines": 294, + "truncated": false, + "block": 9, + "row": 5474 + }, + { + "path": "EEG_LFP_wav_coherence/wcoh_onebyone.m", + "sha256": "69e42f40f3adffd83f1e98b1cd74b06b1e388729627dcb304fee609d19ddec02", + "language": "MATLAB", + "lines": 196, + "truncated": false, + "block": 9, + "row": 5387 + }, + { + "path": "LICENSE", + "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499", + "language": "License", + "lines": 121, + "truncated": false, + "block": 1, + "row": 2210 + }, + { + "path": "PD_SSRT_MAIN.m", + "sha256": "3f40e8af271997a9d4e927502d28432476aed02d7b86cb37a4700179cf039443", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 4438 + }, + { + "path": "README.md", + "sha256": "11b37afb80e4b068d029c0251cbc25543eacbd51f792b40d17a6e78a4546be32", + "language": "Text", + "lines": 74, + "truncated": false, + "block": 9, + "row": 14599 + }, + { + "path": "behavioral_analysis/PD_nosyncTE.m", + "sha256": "411c194ea4525076266e54dfa7830cbd8f532f094ad65a3f02daa8a311b66a42", + "language": "MATLAB", + "lines": 177, + "truncated": false, + "block": 9, + "row": 5256 + }, + { + "path": "behavioral_analysis/PD_ssrt_behav_MAIN.m", + "sha256": "ad5dfbba6103e9b015bbd698d9fa4507feac4f4fcaf7b94e4f4c67d8e97438d7", + "language": "MATLAB", + "lines": 138, + "truncated": false, + "block": 9, + "row": 4962 + }, + { + "path": "behavioral_analysis/RT_allgroupin.m", + "sha256": "531949e062a942d4e8ed8609bca73db7b7a431b5b286aad09fa58b5d50e1c6b1", + "language": "MATLAB", + "lines": 94, + "truncated": false, + "block": 9, + "row": 4685 + }, + { + "path": "behavioral_analysis/RT_comp_cuepair_trialtypes.m", + "sha256": "89549559849c3779222e62a55eabcfc50732a66143c8bd455d98e3e54a642075", + "language": "MATLAB", + "lines": 176, + "truncated": false, + "block": 9, + "row": 5115 + }, + { + "path": "behavioral_analysis/RT_perf_compare.m", + "sha256": "20f3db2389b80be0a96837aabeeb055cd6a1af93dd300181557a3c9ddb8f6896", + "language": "MATLAB", + "lines": 1086, + "truncated": false, + "block": 9, + "row": 5919 + }, + { + "path": "behavioral_analysis/SSDp05_compare.m", + "sha256": "910899404a42b3f4ce96a1d119e860244afb60b852a39989e146cabc91330c90", + "language": "MATLAB", + "lines": 386, + "truncated": false, + "block": 9, + "row": 5619 + }, + { + "path": "behavioral_analysis/SSRTime_PD.m", + "sha256": "85fad4f2b90718028300c327aee2b1f0556b867df1ee27de664b871aeabfdd3c", + "language": "MATLAB", + "lines": 189, + "truncated": false, + "block": 9, + "row": 5177 + }, + { + "path": "behavioral_analysis/calc_RT.m", + "sha256": "b3de336de12f69e3bcfbb6dc3eff2c2048f3293a7dcd440b195ddd4f3bc2290b", + "language": "MATLAB", + "lines": 159, + "truncated": false, + "block": 9, + "row": 5144 + }, + { + "path": "behavioral_analysis/calculate_trialnrs.m", + "sha256": "6c7760679a5d698ea6f9468d10295151c474f8e2be6a65da21b1baf46591c00f", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3852 + }, + { + "path": "behavioral_analysis/get_SSDs_RTs.m", + "sha256": "f30cdb7ee6c7ceb3cfbf01d9eeee236ae05a99e34ed7e8e634b67acb0ac535b5", + "language": "MATLAB", + "lines": 90, + "truncated": false, + "block": 9, + "row": 4474 + }, + { + "path": "behavioral_analysis/preop_postop_RT.m", + "sha256": "8112c706eb2c0efdaf2d87b7c39bc6ad103a2f4bf8f15c9db3cf0d22036476d2", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 9, + "row": 4738 + }, + { + "path": "behavioral_analysis/updrs_behav_corr.m", + "sha256": "ed82260079a28355bebec91c3fa0364f301566b94156cd3eccfc6b5904558b2c", + "language": "MATLAB", + "lines": 272, + "truncated": false, + "block": 9, + "row": 5418 + }, + { + "path": "other/StimOn_stoppart_evinx.m", + "sha256": "6fd73065c8fc91de430b62d62d9fe88c17bafc49767dad1bf017da81c66a6966", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3618 + }, + { + "path": "other/bootstatFDR_clustercorr.m", + "sha256": "51ea0a9ca6e5a56d44eb4fc0b4b319e44e18aa8c953e3817170a596e001a3e96", + "language": "MATLAB", + "lines": 103, + "truncated": false, + "block": 9, + "row": 4733 + }, + { + "path": "other/boxplot_astx.m", + "sha256": "5530c491b41982c81fd42923a87cbe2a3ab97426e4f40f149ccdc6b6dac421ee", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3561 + }, + { + "path": "other/clinical_groups.m", + "sha256": "ef4e6df007f5d187929edce8fb9632f5a56cd60a7e1ec360ebb689f1ff4c9c98", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 9, + "row": 4411 + }, + { + "path": "other/corrmapfig.m", + "sha256": "c6903bdc4d0f07eb9ee98794e5647701ba560b6ad7c384d119ecd1507a31476d", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 9, + "row": 4450 + }, + { + "path": "other/cuepair_trialtypes.m", + "sha256": "e6ad95d70fa4b333213227f550b0ccd70fc45d20293cb0c114c594c46d106f2e", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 9, + "row": 4114 + }, + { + "path": "other/cuepair_trialtypes_2Evinx.m", + "sha256": "27d8a0c410164bbfdd8f4c9bea15fae3e28e544d2f416862de52271fe99b9d6c", + "language": "MATLAB", + "lines": 98, + "truncated": false, + "block": 9, + "row": 4676 + }, + { + "path": "other/datpointsplot.m", + "sha256": "1aaefcf137f5bf6a1f1e0e2d07c35bd564480e5b73cb39b0e05bf5b063088f42", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3677 + }, + { + "path": "other/draw_signifpatch.m", + "sha256": "7353bc6d061d5026af9a859f8aed886364307bfa41fadfea181bcff7c30ba3af", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3624 + }, + { + "path": "other/find_evinx.m", + "sha256": "e17207a913cf9a27ad00b19ed94d0da7d8fdfa7309c8a5c1c5846af3f7b0aa38", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3857 + }, + { + "path": "other/generate_clus_distr_TF.m", + "sha256": "f23e0f4c303d6fc65147f4ead05d6ed4d3d7bf9b1858ea844d28e5c241fe290a", + "language": "MATLAB", + "lines": 347, + "truncated": false, + "block": 9, + "row": 5608 + }, + { + "path": "other/getdata2analyse.m", + "sha256": "992557ff63c61b2e7d60ea64f7a973bc9a0b9edd999851bcab583450ca873fd5", + "language": "MATLAB", + "lines": 327, + "truncated": false, + "block": 9, + "row": 5530 + }, + { + "path": "other/mychisquare.m", + "sha256": "907267537ca15b96d7e503b211f4bbd8e8321f27181ba903ee1bd16e5ef0b829", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 9, + "row": 3101 + }, + { + "path": "other/new_Evinxx_parts.m", + "sha256": "bcbec87dbe17cd438bda86c5e93efeac15349f72f153fdb0b2a0f3535144f97c", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3791 + }, + { + "path": "other/patient_groups_compare.m", + "sha256": "0fadba6c399e0d09e5d6d18d28fe75601deb7533b7e5106636588a0d45e735c0", + "language": "MATLAB", + "lines": 779, + "truncated": false, + "block": 9, + "row": 5836 + }, + { + "path": "other/polypredcicall_mod.m", + "sha256": "0a4398d50efb9ad15e71e8247f49d562ebfaeb34067d8b5a4fc54268dca09af1", + "language": "MATLAB", + "lines": 103, + "truncated": false, + "block": 9, + "row": 4635 + }, + { + "path": "other/set_my_boxplot.m", + "sha256": "42405e37f3328e96089ec2d6fdb986fb002b8c0dffb38bec69988e89e74c20ea", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3554 + }, + { + "path": "other/stacked_bar_perc.m", + "sha256": "5d6368b3b856990edf04de65eaa1ebf97c2bfab778f5dbb9414d5c6d03832825", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3815 + }, + { + "path": "task_code/ArCOMObject_Frame2TTL.m", + "sha256": "4195d09c9473419a89ff11fb3fea1c0cb500352dfa989c281147a51ada94c2c5", + "language": "MATLAB", + "lines": 325, + "truncated": false, + "block": 9, + "row": 5705 + }, + { + "path": "task_code/Frame2TTL.m", + "sha256": "60325642f936aae3ca767d78408512f86a09a85142db6fb93fcb886ffa3a6641", + "language": "MATLAB", + "lines": 138, + "truncated": false, + "block": 9, + "row": 5344 + }, + { + "path": "task_code/Task_SSRT.m", + "sha256": "c75a16543bf2073c299144856ff1767fcc55b797fdc54ff6f06e5f202966767c", + "language": "MATLAB", + "lines": 360, + "truncated": false, + "block": 9, + "row": 5684 + }, + { + "path": "task_code/default_cycle.m", + "sha256": "21f6c4f511560ea2307dc1b6a47e813100bed32c09a75c267807a25d1a0701bd", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 4471 + }, + { + "path": "task_code/delser.m", + "sha256": "07d0cc09b2047e7aaa893e0b72f6e7fe44434b6aa10c70e9a40724caaa6c3817", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 9, + "row": 2980 + }, + { + "path": "task_code/fgetl_nonblocking.m", + "sha256": "1ce1591e5c02f043f5450eab950be5a4377cffaa3befabf0c31739656c404bba", + "language": "MATLAB", + "lines": 174, + "truncated": false, + "block": 9, + "row": 5193 + }, + { + "path": "task_code/flipSens.m", + "sha256": "8fb4214f2c974dfb81a3a1ec797886ba0c1a5a66129591071faccd6ecbf58c9b", + "language": "MATLAB", + "lines": 160, + "truncated": false, + "block": 9, + "row": 5205 + }, + { + "path": "task_code/ser_read.m", + "sha256": "5aed51b43a8aa9a3d86d5d96d660807522b9b8a3eacaffcd046a71e52e172d6c", + "language": "MATLAB", + "lines": 86, + "truncated": false, + "block": 9, + "row": 4515 + }, + { + "path": "task_code/stop_signal.m", + "sha256": "4da1ef75c9deedd32d403211ce40bfa2eb375ad888c8c1f93976ab6cfbd57e9f", + "language": "MATLAB", + "lines": 189, + "truncated": false, + "block": 9, + "row": 5457 + }, + { + "path": "unit_LFP_coupling/PC_RT_correlation.m", + "sha256": "c61d1ad86348972b6c3c70da43b3eba46c973f9188de0419b72ea60fa92a7f84", + "language": "MATLAB", + "lines": 287, + "truncated": false, + "block": 9, + "row": 5489 + }, + { + "path": "unit_LFP_coupling/PC_bursting.m", + "sha256": "708671b801e2f1be3af5546c5dad89eda5eff745e41bb65cd5a02979c57236dd", + "language": "MATLAB", + "lines": 626, + "truncated": false, + "block": 9, + "row": 5768 + }, + { + "path": "unit_LFP_coupling/PC_cell_level.m", + "sha256": "960e7fa07b61416659138c8706e8398dd9fb104706a816a79b1e5e3fd52f60f4", + "language": "MATLAB", + "lines": 298, + "truncated": false, + "block": 9, + "row": 5591 + }, + { + "path": "unit_LFP_coupling/PC_cells_PSTH.m", + "sha256": "285662d77e35104bad0e810c0e8f33b5876e83096f4cbd602e261ba9a210fe68", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4406 + }, + { + "path": "unit_LFP_coupling/PC_figstat3.m", + "sha256": "0491a5e250da7d60dcffa902305ba923e15de9cd3dc14e9fe43281d38e3c6ebe", + "language": "MATLAB", + "lines": 187, + "truncated": false, + "block": 9, + "row": 5238 + }, + { + "path": "unit_LFP_coupling/PC_group_subevs.m", + "sha256": "67995921ca72d1f389729be32b0e9c4f8683469ea4003b182d12f41a405a04c6", + "language": "MATLAB", + "lines": 319, + "truncated": false, + "block": 9, + "row": 5611 + }, + { + "path": "unit_LFP_coupling/PC_groups_f.m", + "sha256": "bcb421bcfab8979aa8f8dd36fcfa7d8d5bac991b6604e45d26418add5df1801e", + "language": "MATLAB", + "lines": 397, + "truncated": false, + "block": 9, + "row": 5724 + }, + { + "path": "unit_LFP_coupling/PC_pie.m", + "sha256": "f7914fa2ce5cf02387d5b32097785fff2f84136351914d6caa23e2837d7d2785", + "language": "MATLAB", + "lines": 235, + "truncated": false, + "block": 9, + "row": 5475 + }, + { + "path": "unit_LFP_coupling/PC_polar.m", + "sha256": "18aca9639973a71cb31c6381f18b570a3b3203925e11ae504675e6dd5a7832e4", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 9, + "row": 4486 + }, + { + "path": "unit_LFP_coupling/PC_respcells_stacked_compare.m", + "sha256": "0d79ce78a4775c069a0bf4fc6135a8fc2858f2c86a01fe0502acda90a6f0df8f", + "language": "MATLAB", + "lines": 218, + "truncated": false, + "block": 9, + "row": 5366 + }, + { + "path": "unit_LFP_coupling/b_rao3_mod.m", + "sha256": "fe5ae7589cf5b4b79a60b07486dc97eeaeb229fe47a3b8310ab7a81379270065", + "language": "MATLAB", + "lines": 152, + "truncated": false, + "block": 9, + "row": 4909 + }, + { + "path": "unit_LFP_coupling/component_PC_RT_correlation.m", + "sha256": "0e24fbb863c9914326c6e0dc88821ed70040274c1081fc8fc26b50ec22f40fcc", + "language": "MATLAB", + "lines": 97, + "truncated": false, + "block": 9, + "row": 4535 + }, + { + "path": "unit_LFP_coupling/get_phas.m", + "sha256": "c13f4511bfb4c7d22c87f27e4cf0c75bd5a455d376b1d1a6f347a49556c10971", + "language": "MATLAB", + "lines": 131, + "truncated": false, + "block": 9, + "row": 4930 + }, + { + "path": "unit_LFP_coupling/phase_hist_sinewave_plot.m", + "sha256": "ca2672e8d9ecb65515912461d8df6de84d2ba9a08322f09c6219f28d28c0330b", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 9, + "row": 4195 + }, + { + "path": "unit_LFP_coupling/spik_phas_extraction.m", + "sha256": "ab857a2c897379e3d44d076ee967e274d1517608d8c669139c9d64f3eba56230", + "language": "MATLAB", + "lines": 391, + "truncated": false, + "block": 9, + "row": 5679 + }, + { + "path": "unit_LFP_coupling/spike_phase_coupling_MAIN.m", + "sha256": "0daf7420548990354e7fdc24b20ef68acd97805a0053c5a7c8b798a771b7a64f", + "language": "MATLAB", + "lines": 180, + "truncated": false, + "block": 9, + "row": 5286 + }, + { + "path": "unit_LFP_coupling/spike_triggered_average_PD.m", + "sha256": "6a8d5fbca09db2f7bae011d316c8bbd458e4a58dd6aac5a259986bb26a240cde", + "language": "MATLAB", + "lines": 252, + "truncated": false, + "block": 9, + "row": 5438 + }, + { + "path": "unit_analysis/EvsI_avg_psth.m", + "sha256": "21df89a6461eeefa98369f287deb1c7622ad865fbfa604bcc89092825a10233e", + "language": "MATLAB", + "lines": 342, + "truncated": false, + "block": 9, + "row": 5526 + }, + { + "path": "unit_analysis/LRatio_pd_ssrt.m", + "sha256": "4ebe18a730d1027ec664d615355516e85d32e64e0f02d716b9413a105e4c3f55", + "language": "MATLAB", + "lines": 118, + "truncated": false, + "block": 9, + "row": 4901 + }, + { + "path": "unit_analysis/L_ratio_ID_distrib.m", + "sha256": "e941e691464d5ceb1b2605185aaa7d39fb0b16411b7f0deb716d111668a119fc", + "language": "MATLAB", + "lines": 207, + "truncated": false, + "block": 9, + "row": 5207 + }, + { + "path": "unit_analysis/PD_ssrt_unit_MAIN.m", + "sha256": "a01e52cb94faf977ed55099cf1f172d5872e7a78d7b6f3c2ff03e23f44861972", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 9, + "row": 4248 + }, + { + "path": "unit_analysis/acg_mod.m", + "sha256": "bcc3b9e4e53467570697057530b4007abaa124fc94b45ec82eeffe29e0c04863", + "language": "MATLAB", + "lines": 279, + "truncated": false, + "block": 9, + "row": 5578 + }, + { + "path": "unit_analysis/all_resppred_map.m", + "sha256": "6b3d0bd8849c60db29d08fa3efae46e960ae631f31957d102c2771b49a598f2f", + "language": "MATLAB", + "lines": 207, + "truncated": false, + "block": 9, + "row": 5226 + }, + { + "path": "unit_analysis/autocorr_PD.m", + "sha256": "783e65f390172522afb120f448e98b0b9cda27f9b57bd1cd2e3253a4860c5a20", + "language": "MATLAB", + "lines": 69, + "truncated": false, + "block": 9, + "row": 4344 + }, + { + "path": "unit_analysis/avg_psth_plot.m", + "sha256": "ef4af6457d4465ec41b0ebcaf2988ff33562c3c838ca34b6651e30875e5094dc", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4531 + }, + { + "path": "unit_analysis/avg_psth_stat.m", + "sha256": "da48b6c9b9aff680a569ae200506618beac7228c38716059a4ed52c17f8d6888", + "language": "MATLAB", + "lines": 176, + "truncated": false, + "block": 9, + "row": 5119 + }, + { + "path": "unit_analysis/cellnr_pie.m", + "sha256": "ca95e06c79eab64f42dc93beea5779dc414477406c9ffd2b381887ac64d3b65f", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3594 + }, + { + "path": "unit_analysis/check_resp_pvalues.m", + "sha256": "ed0adc923e432cf236c92c425565d84f3bba6b46b6b00498a6e9e75692429758", + "language": "MATLAB", + "lines": 114, + "truncated": false, + "block": 9, + "row": 4548 + }, + { + "path": "unit_analysis/compare_partitions_resppred.m", + "sha256": "a8f323f47385f041b03828eeeffc7e5574ba0e8c30502cba5881297172d987b6", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3914 + }, + { + "path": "unit_analysis/defineLabelsColors_pd.m", + "sha256": "979ee0b44e1e592d6f4ca659089b4ed159173481fb52850decf7267584c5784e", + "language": "MATLAB", + "lines": 76, + "truncated": false, + "block": 9, + "row": 5328 + }, + { + "path": "unit_analysis/find_cellidx.m", + "sha256": "12b4d35d839f6b825b8d6ec180171c212b1fb6f6aa2308536a6ffde8d8ee4ba9", + "language": "MATLAB", + "lines": 138, + "truncated": false, + "block": 9, + "row": 4895 + }, + { + "path": "unit_analysis/get_prop.m", + "sha256": "6bde51e1d053880616ffd8e638916a87f28e7ca49abae7233a52c085029d13a3", + "language": "MATLAB", + "lines": 652, + "truncated": false, + "block": 9, + "row": 5840 + }, + { + "path": "unit_analysis/mediansplitBI_PSTHs.m", + "sha256": "9840d28df0a8dc9c29afffc725957c09194f36c9c9ccb6ba91d3072b80e7e69b", + "language": "MATLAB", + "lines": 348, + "truncated": false, + "block": 9, + "row": 5651 + }, + { + "path": "unit_analysis/norm_psth_map1.m", + "sha256": "b8f9553b08461993b21a83e2e8501b721a06eb9791bf6aeb13ed1586b67ae1e1", + "language": "MATLAB", + "lines": 266, + "truncated": false, + "block": 9, + "row": 5482 + }, + { + "path": "unit_analysis/partitions_avg_psth.m", + "sha256": "6bdabbb49bad2794abbe91c515ee263dc43b18e787635f6a0fbc8fa2a687099c", + "language": "MATLAB", + "lines": 302, + "truncated": false, + "block": 9, + "row": 5524 + }, + { + "path": "unit_analysis/responsesorter_PD.m", + "sha256": "1c6efee862327ee4e1948b03cf92a6726f8032d0eb4e67e933c5797dc3651432", + "language": "MATLAB", + "lines": 258, + "truncated": false, + "block": 9, + "row": 5506 + }, + { + "path": "unit_analysis/respsort_partitions_PD.m", + "sha256": "f08ed9b8c5481c4407b8cc7166de67fd1b93ba4be764f97d0d446376168daf83", + "language": "MATLAB", + "lines": 238, + "truncated": false, + "block": 9, + "row": 5423 + }, + { + "path": "unit_analysis/set_meanFR.m", + "sha256": "d809fde32ab6a3a7e21a5f313c9b2a10973bcd52b5e8bf3bdd1d2282783b8948", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3669 + }, + { + "path": "unit_analysis/unit_bursting.m", + "sha256": "4f8f86e5a9d1107b85a5e0ae8b4a5f7e1f4358ad973a5897a40c4f513ff09644", + "language": "MATLAB", + "lines": 344, + "truncated": false, + "block": 9, + "row": 5499 + }, + { + "path": "unit_analysis/unit_sorter.m", + "sha256": "cd37379b93bfc8affb09d9bc67678e7d923abeb85180ea979fffcf6df8812efd", + "language": "MATLAB", + "lines": 114, + "truncated": false, + "block": 9, + "row": 4677 + }, + { + "path": "unit_analysis/unit_subregions.m", + "sha256": "60168e2321f1998c84715d154e6ea5b8d63122c3ad537eab23265e10a24124b2", + "language": "MATLAB", + "lines": 923, + "truncated": false, + "block": 9, + "row": 5879 + }, + { + "path": "unit_analysis/updrs_bursting_corr.m", + "sha256": "2b7fa1c1d3d042b42b3e076768416228d284900cbb35a9ebd98f76346cf26893", + "language": "MATLAB", + "lines": 104, + "truncated": false, + "block": 9, + "row": 4624 + }, + { + "path": "unit_preprocess/create_EventSpikes_mat.m", + "sha256": "7d13228487cf35af8ea4ac2f29656798818d1b321c44f82ee5a6a3dae1bef988", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 4007 + }, + { + "path": "unit_preprocess/defineEventsEpochs_pdtask.m", + "sha256": "19633aa6c58aca289f6cfd20dc8aaedaf5afb630fd1ee938039587700cdfef7c", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 9, + "row": 4327 + }, + { + "path": "unit_preprocess/inodisc.m", + "sha256": "3c67b84cb1db20318a2f9753fa970e67d90fc4165d6507b4fe69b2dcfca3615b", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 9, + "row": 4645 + }, + { + "path": "unit_preprocess/openephys_SaveMClustFeatures.m", + "sha256": "7ccf7f8c32988a517fd13a4aa552d27930194694dad5a6ea55d67e1e92e317f2", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4397 + }, + { + "path": "unit_preprocess/read_inomed.m", + "sha256": "d46194c92e9ed92af45faa2281c81281114f31f6f88207b621d5f026e7d8a8ee", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 9, + "row": 4588 + }, + { + "path": "unit_preprocess/saveDATasMER.m", + "sha256": "30a4a245f977e1ebc1c36c340842120d8606ae8a46235509c66b4b8d8f6c20f9", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 9, + "row": 4322 + } + ] +} \ No newline at end of file diff --git a/manifests/6b/github.com__agnessa14__mid-level-features.json b/manifests/6b/github.com__agnessa14__mid-level-features.json new file mode 100644 index 0000000000000000000000000000000000000000..5e589ff7b61934c48169ffa04611116c62b7a4aa --- /dev/null +++ b/manifests/6b/github.com__agnessa14__mid-level-features.json @@ -0,0 +1,1083 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/agnessa14/mid-level-features", + "url": "https://github.com/Agnessa14/Mid-level-features", + "host": "github.com", + "commit": "d069bb4b3e5eef22d9487fc0e6fedf485b778322", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "CNN/Activation_extraction_and_prep/activation_extraction_cnn_images.py", + "sha256": "fa1954bcc5f92066700a3ee81709a6d12894336e8b5703b719451b4af1f9f3d1", + "language": "Python", + "lines": 293, + "truncated": false, + "block": 9, + "row": 10648 + }, + { + "path": "CNN/Activation_extraction_and_prep/activation_extraction_cnn_videos.py", + "sha256": "649843896d40ed74aae77e297e8343272dd8cd402666e8147dc7b4423fcb4267", + "language": "Python", + "lines": 378, + "truncated": false, + "block": 9, + "row": 11319 + }, + { + "path": "CNN/Activation_extraction_and_prep/pca_activations.py", + "sha256": "cae7b40fadd1fb51a3a16832b7e765a5762b85a9e0e8cd8dd7a1065978ead34b", + "language": "Python", + "lines": 483, + "truncated": false, + "block": 9, + "row": 11545 + }, + { + "path": "CNN/Activation_extraction_and_prep/prepare_layers.py", + "sha256": "36605e152028c79f14b5eaf880746cb6d5ad8bd99f4051e0277df22b3d036c32", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 9, + "row": 9234 + }, + { + "path": "CNN/Encoding/encoding_cnn.py", + "sha256": "cfceb48d261b5201279da8a0d81b9e939a00d8306d065bcaa5bde622d5279134", + "language": "Python", + "lines": 294, + "truncated": false, + "block": 9, + "row": 10731 + }, + { + "path": "CNN/Encoding/hyperparameter_optimization_cnn.py", + "sha256": "ddaf18d20af2c5ef4debbf8b095a360e567c80fb18e2190003d6135ff1ed2c4d", + "language": "Python", + "lines": 275, + "truncated": false, + "block": 9, + "row": 10641 + }, + { + "path": "CNN/Encoding/utils.py", + "sha256": "009eb19b473ffa0a7ffb55ee8ec765d6e4a7b41429fb6bb8a565f33de2dd46f0", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7007 + }, + { + "path": "CNN/Plotting/eeg_vs_cnn_corr_peak_latencies.py", + "sha256": "c726a4d3efc57fa764926534cd0d984107473286c3405b02dbf7bee05b9bf09a", + "language": "Python", + "lines": 757, + "truncated": false, + "block": 9, + "row": 12135 + }, + { + "path": "CNN/Plotting/encoding_plot_cnn.py", + "sha256": "1353dceddc2c2aa769db67a5a3e4452b0073358ad9c5004ffa92d3095006dd5b", + "language": "Python", + "lines": 466, + "truncated": false, + "block": 9, + "row": 11350 + }, + { + "path": "CNN/Stats/encoding_bootstrapping_cnn.py", + "sha256": "2900befbdf7e8977dd9a18395e9ac15892d60539c857b446475c5a6b46194639", + "language": "Python", + "lines": 567, + "truncated": false, + "block": 9, + "row": 11684 + }, + { + "path": "CNN/Stats/encoding_difference_bootstrapping_cnn.py", + "sha256": "7191e4cb6f1d7eb5d027b4e6db7048e0d4d3846f5a89dcb8032b0e0efc8747a7", + "language": "Python", + "lines": 410, + "truncated": false, + "block": 9, + "row": 11299 + }, + { + "path": "CNN/Stats/encoding_difference_significance_stats_cnn.py", + "sha256": "456d842df0a1fad0965a57f0476b86a58038527a7cc99e5e7c4f8a12200f0199", + "language": "Python", + "lines": 278, + "truncated": false, + "block": 9, + "row": 10629 + }, + { + "path": "CNN/Stats/encoding_significance_stats_cnn.py", + "sha256": "91a36222dc9914bf6fe3d5059773236a5e52c64e9ace5f9af0ee7d40a6ac797f", + "language": "Python", + "lines": 261, + "truncated": false, + "block": 9, + "row": 10343 + }, + { + "path": "Controls/control_analysis_1/c1_miniclips.sh", + "sha256": "5c8023c04da7dd2c7ffc7cc60c475b79013b5169e0d189e04c2b7e95a897b33b", + "language": "Shell", + "lines": 63, + "truncated": false, + "block": 9, + "row": 14254 + }, + { + "path": "Controls/control_analysis_1/sbatch_c1.sh", + "sha256": "6b0ccc74a1ee3a0f5392449736a592f1e153b6775b3c02f1b188147e2effc957", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14068 + }, + { + "path": "Controls/control_analysis_10/data.py", + "sha256": "8fb4e40d613f08d857df4eb8520671b8a20ce03f3b65e1b6a7e82811f129f36f", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9044 + }, + { + "path": "Controls/control_analysis_10/download_kinetics.py", + "sha256": "019a0b2eccb4ff4b854aed38970ad8f3bb27801ca0b072a056c1e301d3edede8", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7596 + }, + { + "path": "Controls/control_analysis_10/download_kinetics_train.sh", + "sha256": "fa5d9bf17662605c5bb9766b0067777c90448aeda5530098b98183c29a11ccfd", + "language": "Shell", + "lines": 13, + "truncated": false, + "block": 9, + "row": 14014 + }, + { + "path": "Controls/control_analysis_10/download_kinetics_val.sh", + "sha256": "0ba2b419a6dde7e94ffda7e0f1e3b4ec6f325e4594b13b8b4c1c57d981a789ea", + "language": "Shell", + "lines": 13, + "truncated": false, + "block": 9, + "row": 14018 + }, + { + "path": "Controls/control_analysis_10/ex_c10.sh", + "sha256": "9595274260f61a3ac8b782220980f655beffc4e45cba0064732eef17af35c101", + "language": "Shell", + "lines": 7, + "truncated": false, + "block": 9, + "row": 13928 + }, + { + "path": "Controls/control_analysis_10/model.py", + "sha256": "aba66daaae66e199b6350a8ded22054140622629decc03b4a7ad4121b0d724d6", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7493 + }, + { + "path": "Controls/control_analysis_10/run_c10.sh", + "sha256": "99a98d793d0efeb3e0f78d60b39d350e25f4dc8a4ea7ed9aa7e30fab0cf76239", + "language": "Shell", + "lines": 53, + "truncated": false, + "block": 9, + "row": 14216 + }, + { + "path": "Controls/control_analysis_10/sbatch_c10.sh", + "sha256": "a504fbd6d167b61282f3633a986600ebce3e35fcc9f51fd8083cd6d65c2bca77", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14057 + }, + { + "path": "Controls/control_analysis_10/sbatch_download.sh", + "sha256": "204b520675625a0a1aff56d6bbcd6db5fd60e1431ae7b80a27fbdab0d0b6ab6a", + "language": "Shell", + "lines": 21, + "truncated": false, + "block": 9, + "row": 14093 + }, + { + "path": "Controls/control_analysis_10/sbatch_ex.sh", + "sha256": "1d9242dd552d71d38cc4359e3094cb1e1a68fdf53e8490c0e7b0bec4320ab40c", + "language": "Shell", + "lines": 21, + "truncated": false, + "block": 9, + "row": 14077 + }, + { + "path": "Controls/control_analysis_10/sbatch_start_tensorboard.sh", + "sha256": "e67794f58f67e0f3cf11a4d2c1da066ea9b5565158be206f5004d7ad7da97463", + "language": "Shell", + "lines": 32, + "truncated": false, + "block": 9, + "row": 14122 + }, + { + "path": "Controls/control_analysis_10/sbatch_train.sh", + "sha256": "e93fe4f075bd8b7424531e8e55fa5c9f9396a419dd2e5535b9b89b73cd7ba883", + "language": "Shell", + "lines": 23, + "truncated": false, + "block": 9, + "row": 14106 + }, + { + "path": "Controls/control_analysis_10/train.py", + "sha256": "2ba5091ebed9e293d55caaeb4595abe339978cee1d92544720c719512cc88989", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 9, + "row": 9208 + }, + { + "path": "Controls/control_analysis_10/train.sh", + "sha256": "91b5bcbf145fdf24c4b8bb0194ded091d432d2d2a90b949b95e0bb5c0ed339d1", + "language": "Shell", + "lines": 27, + "truncated": false, + "block": 9, + "row": 14088 + }, + { + "path": "Controls/control_analysis_10/train_weight_decay.sh", + "sha256": "38ceafb13f9687644eb32307702e8a7b6908e3cc56fd1f2653116d6b066b72b6", + "language": "Shell", + "lines": 27, + "truncated": false, + "block": 9, + "row": 14090 + }, + { + "path": "Controls/control_analysis_10/utils.py", + "sha256": "1cf225aaa8d890d32cedf43872f5ad1cbcd1a12fdb7198a28c99e9387d8fcb9b", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6784 + }, + { + "path": "Controls/control_analysis_11/ex_c11.sh", + "sha256": "ac825ce957f06da4c535304bf860b777f244ac669b6b3b9c246968cfd270ba1e", + "language": "Shell", + "lines": 8, + "truncated": false, + "block": 9, + "row": 13936 + }, + { + "path": "Controls/control_analysis_11/run_c11.sh", + "sha256": "78a5f3e68228e153e7afcc614026c331ea72af5915a748115010f540d692723f", + "language": "Shell", + "lines": 53, + "truncated": false, + "block": 9, + "row": 14215 + }, + { + "path": "Controls/control_analysis_11/sbatch_c11.sh", + "sha256": "b4a8ab5297f258ec499241d514843f3d35dab2e49ef4b6d9dba61d007f07bf9d", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14058 + }, + { + "path": "Controls/control_analysis_11/sbatch_ex.sh", + "sha256": "6ce9fb8d95058efbcaa9b74a676ff95685899f9bf5c675e0bab52328f486129c", + "language": "Shell", + "lines": 21, + "truncated": false, + "block": 9, + "row": 14078 + }, + { + "path": "Controls/control_analysis_12/c12_differences.sh", + "sha256": "65455ed51618a548c4dd75e07b1ef8828ee6e7d79cd8480369cc1bfc35ca278f", + "language": "Shell", + "lines": 23, + "truncated": false, + "block": 9, + "row": 14092 + }, + { + "path": "Controls/control_analysis_12/c12_differences_cnn.sh", + "sha256": "18904b9e68679813bdef9ae42456aebd470e184bdeb3c9799c725ca30f784ce3", + "language": "Shell", + "lines": 26, + "truncated": false, + "block": 9, + "row": 14101 + }, + { + "path": "Controls/control_analysis_12/c12_images.sh", + "sha256": "1eaeb308a491ea6747960daee66d085f6be1045c0c5535c896737f694c025321", + "language": "Shell", + "lines": 45, + "truncated": false, + "block": 9, + "row": 14188 + }, + { + "path": "Controls/control_analysis_12/c12_images_cnn.sh", + "sha256": "255c12f04f54a6a31a3de7fcead2abacf5b9a10846fbf234d67c4ec97b2949bb", + "language": "Shell", + "lines": 42, + "truncated": false, + "block": 9, + "row": 14162 + }, + { + "path": "Controls/control_analysis_12/c12_miniclips.sh", + "sha256": "4f29a791c48b4ec5a4c7dc924a7e3939cf62602bcf0d9716e03c20a2fc50e872", + "language": "Shell", + "lines": 45, + "truncated": false, + "block": 9, + "row": 14194 + }, + { + "path": "Controls/control_analysis_12/c12_miniclips_cnn.sh", + "sha256": "288fc31bbd1ffd0498242214377a7e02271c9044313702d4f51f014f5d247231", + "language": "Shell", + "lines": 42, + "truncated": false, + "block": 9, + "row": 14165 + }, + { + "path": "Controls/control_analysis_12/sbatch_c12.sh", + "sha256": "ed3ca10c4f94172afb73e018c3f068ad45964560669c4be00cc906cfa9570259", + "language": "Shell", + "lines": 18, + "truncated": false, + "block": 9, + "row": 14066 + }, + { + "path": "Controls/control_analysis_2/c2_miniclips.sh", + "sha256": "356472cdd30ff24f1652174cf8189be926627ce1b2af245d0d26b391b9021675", + "language": "Shell", + "lines": 62, + "truncated": false, + "block": 9, + "row": 14251 + }, + { + "path": "Controls/control_analysis_2/sbatch_c2.sh", + "sha256": "b80df46c34dbf0a95c4377a17d41e12bec993d6344ddfe0c0a60bf8f7ca66e9f", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14069 + }, + { + "path": "Controls/control_analysis_3/c3_miniclips.sh", + "sha256": "cf1c8265b19321b3db30f328cf41b05a0033c9b38a38d493da9c386d6bd91b1d", + "language": "Shell", + "lines": 44, + "truncated": false, + "block": 9, + "row": 14200 + }, + { + "path": "Controls/control_analysis_3/encoding_c3.py", + "sha256": "5809d3d9a1578f56aeed4907691f5d8546765171462b3ea0a3819b7decc5a777", + "language": "Python", + "lines": 308, + "truncated": false, + "block": 9, + "row": 10700 + }, + { + "path": "Controls/control_analysis_3/hyperparameter_optimization_c3.py", + "sha256": "45bd10ccfac32cdff58495be4f1549c2deedacbb78d20a2386f2a0fb8e623728", + "language": "Python", + "lines": 319, + "truncated": false, + "block": 9, + "row": 10831 + }, + { + "path": "Controls/control_analysis_3/sbatch_c3.sh", + "sha256": "f990d73291a8caf45851c90e1de05f38f2d8bff58365e4967a86c5f927aa615d", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14070 + }, + { + "path": "Controls/control_analysis_4/control_analysis_4.py", + "sha256": "d51539ec8dfadcad36adb2a089b587a7f60cf6cad501f19b7d6f879262acc394", + "language": "Python", + "lines": 281, + "truncated": false, + "block": 9, + "row": 10404 + }, + { + "path": "Controls/control_analysis_4/run_c4.sh", + "sha256": "ead9158375c878e693fe7c2b39311d5a296c3ac5de36604a26b7f85701bedfd6", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 9, + "row": 13929 + }, + { + "path": "Controls/control_analysis_4/sbatch_c4.sh", + "sha256": "074bc0266f7ca4ebf045f629a1b52b933b2cde8980abe7c0417f3771f3e8b036", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14054 + }, + { + "path": "Controls/control_analysis_5/control_analysis_5.py", + "sha256": "05bc76713c907b790d8eb06771396618f94872cbaa052c84dfc51ac31ce58650", + "language": "Python", + "lines": 214, + "truncated": false, + "block": 9, + "row": 9791 + }, + { + "path": "Controls/control_analysis_5/run_c5.sh", + "sha256": "f9c39743af228d39e83e2fd912105e3d5478bf8c30d455d3ce78e70920f6e3f5", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 9, + "row": 13930 + }, + { + "path": "Controls/control_analysis_5/sbatch_c5.sh", + "sha256": "5e0129a72d260935153e5e045c3da1cb06edc5f5b3902b48880f622db8a273a8", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14055 + }, + { + "path": "Controls/control_analysis_6/control_analysis_6.py", + "sha256": "038a3645612d28cf5d012cd638a8bbb5ac64f9b3c8272ce0c90ec825d992b450", + "language": "Python", + "lines": 293, + "truncated": false, + "block": 9, + "row": 10618 + }, + { + "path": "Controls/control_analysis_6/control_analysis_6_plotting.py", + "sha256": "64ce635fd23b29fc19532915f145fef86d9578e57716874bc2ac9b18877c2ea7", + "language": "Python", + "lines": 420, + "truncated": false, + "block": 9, + "row": 11117 + }, + { + "path": "Controls/control_analysis_6/run_c6_1_images.sh", + "sha256": "0995caaf6f8a1e69905cc640f9c952f443dd6ef6187cce8854e12ec717145c2d", + "language": "Shell", + "lines": 49, + "truncated": false, + "block": 9, + "row": 14179 + }, + { + "path": "Controls/control_analysis_6/run_c6_1_miniclips.sh", + "sha256": "105cd409d2f456e3830502763cb771d567eba11f207d367c486d1cccce0adf13", + "language": "Shell", + "lines": 46, + "truncated": false, + "block": 9, + "row": 14167 + }, + { + "path": "Controls/control_analysis_6/run_c6_2_images.sh", + "sha256": "d11baeda8263327c3257a1f5ddabf4d3d6be854f54ada16c143fd3874a0cc9e2", + "language": "Shell", + "lines": 38, + "truncated": false, + "block": 9, + "row": 14143 + }, + { + "path": "Controls/control_analysis_6/run_c6_2_miniclips.sh", + "sha256": "ed856cd9387065dc53da7ded348bccea84a57ad074364113fcf821d3c3a29b23", + "language": "Shell", + "lines": 37, + "truncated": false, + "block": 9, + "row": 14141 + }, + { + "path": "Controls/control_analysis_6/sbatch_c6_1.sh", + "sha256": "e5540f22732d7e35567091645c0c8a91b4bc0d7093a0474164b31bfe288e89cd", + "language": "Shell", + "lines": 18, + "truncated": false, + "block": 9, + "row": 14073 + }, + { + "path": "Controls/control_analysis_6/sbatch_c6_2.sh", + "sha256": "31cd26a393fd00ce09e1306786cf24c472f06b56b882fcd47d9b0f3d878fc462", + "language": "Shell", + "lines": 18, + "truncated": false, + "block": 9, + "row": 14071 + }, + { + "path": "Controls/control_analysis_7/control_analysis_7_cka.py", + "sha256": "67b39e8cd8795c08f8cc6b1ce14e8d67ca326065f6f59ce0de6ab417710f4479", + "language": "Python", + "lines": 219, + "truncated": false, + "block": 9, + "row": 9787 + }, + { + "path": "Controls/control_analysis_7/control_analysis_7_naive.py", + "sha256": "4c11022607a38f52742ea1a74c0445d2eb98e187c25b886cb6f3123c867238ac", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 9, + "row": 9651 + }, + { + "path": "Controls/control_analysis_7/control_analysis_7_rsa.py", + "sha256": "72c4ba2ff76e344f7bccf001c0ba7eb72e52dec8403d470e4e61f6bd8a6c7772", + "language": "Python", + "lines": 283, + "truncated": false, + "block": 9, + "row": 10377 + }, + { + "path": "Controls/control_analysis_7/run_c7.sh", + "sha256": "9c1f851cf43610e2583d65df89dbd563787b280efb67ad1d2271556f45477079", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 9, + "row": 13986 + }, + { + "path": "Controls/control_analysis_7/run_c7_cka.sh", + "sha256": "a14219f2a913fadf14d57ebebe3230f1e2d5732ce8c22024bce22564033e75b7", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 9, + "row": 13980 + }, + { + "path": "Controls/control_analysis_7/run_c7_rsa.sh", + "sha256": "2281f185fb5c52a25481062e12059c33f2914f18b0b9ade5055f40b118f51124", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 9, + "row": 13978 + }, + { + "path": "Controls/control_analysis_7/sbatch_c7.sh", + "sha256": "64a4e10590a497bea21c9d01016e29b1174ccdbf302c283685a6d6fe78087665", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14065 + }, + { + "path": "Controls/control_analysis_8/run_c8.sh", + "sha256": "8d75ad28e937edad0fb425ed0d876337545899f5249beaf735949945e52071da", + "language": "Shell", + "lines": 53, + "truncated": false, + "block": 9, + "row": 14177 + }, + { + "path": "Controls/control_analysis_8/sbatch_c8.sh", + "sha256": "f2ec0bcd301327c2b3c5134e2fbc21ba3944f7c48292d2bdd8d697b6980c5f67", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14060 + }, + { + "path": "Controls/control_analysis_8/time_gen_diff_plotting.py", + "sha256": "b6669256eda8d977fa23d3dc1f8d960bec7e566725cf99b51372df1c5d4dba6c", + "language": "Python", + "lines": 308, + "truncated": false, + "block": 9, + "row": 10583 + }, + { + "path": "Controls/control_analysis_8/time_gen_plotting.py", + "sha256": "1eb16f110c1ee6a35810df734aafe8584f8651727f496b478a38e77f571bf89e", + "language": "Python", + "lines": 300, + "truncated": false, + "block": 9, + "row": 10587 + }, + { + "path": "Controls/control_analysis_8/time_gen_stats.py", + "sha256": "16c6d507b26ea516306eace741a88c347011712039b7454786fb0a6181d61077", + "language": "Python", + "lines": 268, + "truncated": false, + "block": 9, + "row": 10470 + }, + { + "path": "Controls/control_analysis_8/time_gen_stats_diff.py", + "sha256": "28f27a31ae89c25a356cc8b567d1b324333151f7790fba9904e9fad3bc9e3fda", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 9, + "row": 10661 + }, + { + "path": "Controls/control_analysis_8/time_generalization.py", + "sha256": "14d3a7907c976f76b8cc2eafe8bcc1a38a62376a33e5f1ed95b90c83e02e6eff", + "language": "Python", + "lines": 279, + "truncated": false, + "block": 9, + "row": 10351 + }, + { + "path": "Controls/control_analysis_9/c9_images.sh", + "sha256": "2700a923915796fded78cbc717e590a4b2759203aa60e86977feb603706bd55c", + "language": "Shell", + "lines": 38, + "truncated": false, + "block": 9, + "row": 14148 + }, + { + "path": "Controls/control_analysis_9/c9_miniclips.sh", + "sha256": "8af0875500370b9a99c4a0ba012cc4391150d6c24031c63ebbd6e40762014c67", + "language": "Shell", + "lines": 38, + "truncated": false, + "block": 9, + "row": 14151 + }, + { + "path": "Controls/control_analysis_9/sbatch_c9.sh", + "sha256": "32bf599cae57a4f6ab25f1971fa33380ff79698f0b5a6cacf03755ca4dd9ba52", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14067 + }, + { + "path": "Controls/create_config.py", + "sha256": "f0e10ef2acbf7fcd933649d29cce144b9f2faf5a4d789e30619e643ffd43e179", + "language": "Python", + "lines": 566, + "truncated": false, + "block": 9, + "row": 11926 + }, + { + "path": "Controls/default_after_decoding.sh", + "sha256": "4c77cae53e7bd443db5718584e008977f44914faa658ef1cb15b24c783fe1977", + "language": "Shell", + "lines": 46, + "truncated": false, + "block": 9, + "row": 14191 + }, + { + "path": "Controls/default_decoding_images.sh", + "sha256": "7e050ec424b579967e739d8d254db20990c2d519482f9c4cd3b9bf9fecf38cfa", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 9, + "row": 13969 + }, + { + "path": "Controls/default_decoding_videos.sh", + "sha256": "5681c1c3e619cc28abe5c0e99211e1d476a5ff7ef989b67801adbc75657d0958", + "language": "Shell", + "lines": 17, + "truncated": false, + "block": 9, + "row": 13973 + }, + { + "path": "Controls/default_differences.sh", + "sha256": "185dce74eb361931ef9d9699a3b3a56e5bd270c08f8bb96831663f185cb95548", + "language": "Shell", + "lines": 23, + "truncated": false, + "block": 9, + "row": 14085 + }, + { + "path": "Controls/default_differences_cnn.sh", + "sha256": "524549c845d6a940d8b28884e45a6ea1883ec70029f529275318df14bb1fb80b", + "language": "Shell", + "lines": 26, + "truncated": false, + "block": 9, + "row": 14098 + }, + { + "path": "Controls/default_images.sh", + "sha256": "c3a15999d813c9909c42c6b097bc3fd1a412e07d8f4ca2fda5c34133e65f82f9", + "language": "Shell", + "lines": 50, + "truncated": false, + "block": 9, + "row": 14197 + }, + { + "path": "Controls/default_images_cnn.sh", + "sha256": "1974d2152b5182b677e9c6ea476f5118d062621ee1d4201a4347ff23cbfd3934", + "language": "Shell", + "lines": 53, + "truncated": false, + "block": 9, + "row": 14210 + }, + { + "path": "Controls/default_miniclips.sh", + "sha256": "bb66be595f17cc927f3ecb8d14b09903780a95774ddd1fd71fa77fc686544d11", + "language": "Shell", + "lines": 45, + "truncated": false, + "block": 9, + "row": 14174 + }, + { + "path": "Controls/default_miniclips_cnn.sh", + "sha256": "7119d2079a1be25827b1d4575e387c766a4cf52c1708e8a0484c4ab7b15466a0", + "language": "Shell", + "lines": 54, + "truncated": false, + "block": 9, + "row": 14212 + }, + { + "path": "Controls/ex_images_cnn.sh", + "sha256": "49b34568e40077109816380a650d74fb3fe2e4504f15538e0b52a7054188326a", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 9, + "row": 14001 + }, + { + "path": "Controls/ex_miniclips_cnn.sh", + "sha256": "a985572b25c608ab45b82c42e672fe6b8eb32f45169a806f6995e138c419ece6", + "language": "Shell", + "lines": 12, + "truncated": false, + "block": 9, + "row": 13972 + }, + { + "path": "Controls/sbatch_decoding.sh", + "sha256": "ef9bb2a24c2bf889587ff8a674df0248deafa9c9c7d4d9526f8dc2216792ffab", + "language": "Shell", + "lines": 21, + "truncated": false, + "block": 9, + "row": 14082 + }, + { + "path": "Controls/sbatch_decoding_images.sh", + "sha256": "42127b9f01e386f2baa16378a8e0ef2e1444826d675d8f8e6edeecc129e6ef3b", + "language": "Shell", + "lines": 30, + "truncated": false, + "block": 9, + "row": 14136 + }, + { + "path": "Controls/sbatch_decoding_videos.sh", + "sha256": "20409d799d1adb8ab2ca1389bf4afb4cc01ba4f807bdf583450a8d88512aff6f", + "language": "Shell", + "lines": 28, + "truncated": false, + "block": 9, + "row": 14137 + }, + { + "path": "Controls/sbatch_default.sh", + "sha256": "271d816933d6aff732f44cbb28cf6d4935e0fc8b325954b5a5f5b1cd0f202242", + "language": "Shell", + "lines": 19, + "truncated": false, + "block": 9, + "row": 14081 + }, + { + "path": "Controls/sbatch_ex.sh", + "sha256": "ca3bb8fd3521df6501b3d9d7af6dcfa13d062e5055c5b1da6229c4d3c4e6d9fb", + "language": "Shell", + "lines": 21, + "truncated": false, + "block": 9, + "row": 14083 + }, + { + "path": "EEG/Decoding/decoding.py", + "sha256": "6c0b4c5921960f526bb55f0e44564dd644e0de5b9b3e28f33fbcb657670a13df", + "language": "Python", + "lines": 544, + "truncated": false, + "block": 9, + "row": 11833 + }, + { + "path": "EEG/Decoding/utils.py", + "sha256": "6e7342a584321cadbb86278aaf29dc44d447cd59b1e967d93c90b3b6b3b997a0", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 9, + "row": 8162 + }, + { + "path": "EEG/Encoding/annotation_prep_images.py", + "sha256": "273e43dacb555787d51c131e77d24f6349c7c1a6ed212914a1b41b2353e6e163", + "language": "Python", + "lines": 394, + "truncated": false, + "block": 9, + "row": 11286 + }, + { + "path": "EEG/Encoding/annotation_prep_videos.py", + "sha256": "2e6556e948fac1c494d8c6e015e4e0a5d6888af2af08e0958e9c3692b201063c", + "language": "Python", + "lines": 455, + "truncated": false, + "block": 9, + "row": 11577 + }, + { + "path": "EEG/Encoding/encoding.py", + "sha256": "dabcdcc45596e6c9e53920891a466e055c3195e68f004d60175a298f5b0ec654", + "language": "Python", + "lines": 402, + "truncated": false, + "block": 9, + "row": 11245 + }, + { + "path": "EEG/Encoding/hyperparameter_optimization.py", + "sha256": "e7f2f4d8990b1298c69eec9f1106c47dc5dab915a7c65083e9d1cb9904e7eef9", + "language": "Python", + "lines": 387, + "truncated": false, + "block": 9, + "row": 11198 + }, + { + "path": "EEG/Encoding/mvnn_encoding.py", + "sha256": "17eb639e773422bab4386e0c29a1955a4c9365c7cfe574052ec94f79da4c8ade", + "language": "Python", + "lines": 480, + "truncated": false, + "block": 9, + "row": 11401 + }, + { + "path": "EEG/Encoding/noise_ceiling.py", + "sha256": "62a48a3d0bb3b4b66386b7aa99ad04420941e7d42b5c46a5b49b411b892b732e", + "language": "Python", + "lines": 373, + "truncated": false, + "block": 9, + "row": 11078 + }, + { + "path": "EEG/Encoding/utils.py", + "sha256": "9c12b6d48a69af99797c07714b02214020c60980db4cd72eb9b9c2330c9f35b5", + "language": "Python", + "lines": 718, + "truncated": false, + "block": 9, + "row": 11933 + }, + { + "path": "EEG/Plotting/plot_decoding.py", + "sha256": "d7af21fdac20a6697cc164d1c366b4da4abbf3b3d5c2088d01275a6f281409a3", + "language": "Python", + "lines": 463, + "truncated": false, + "block": 9, + "row": 11112 + }, + { + "path": "EEG/Plotting/plot_encoding.py", + "sha256": "857528344bebf85f33a0d5ec1ba31208c7b867f06f466c55ecadefb1bffe8cd1", + "language": "Python", + "lines": 657, + "truncated": false, + "block": 9, + "row": 11797 + }, + { + "path": "EEG/Preprocessing/preprocessing_eeg.py", + "sha256": "314d1218e441c0dd5fef87cc584b799cfb9c0136ee57439527c55d0bebac1be8", + "language": "Python", + "lines": 863, + "truncated": false, + "block": 9, + "row": 12257 + }, + { + "path": "EEG/Stats/decoding_bootstrapping.py", + "sha256": "b23c4020d8d6a5a61f03be031817e0da70a9a865667f3de1a35f3e4065332d26", + "language": "Python", + "lines": 364, + "truncated": false, + "block": 9, + "row": 11133 + }, + { + "path": "EEG/Stats/decoding_difference_bootstrapping.py", + "sha256": "d6cad6fbe433b05be1356a321948d92728d7be0a320b2c7cc76ee60b44bf81d6", + "language": "Python", + "lines": 295, + "truncated": false, + "block": 9, + "row": 10668 + }, + { + "path": "EEG/Stats/decoding_difference_significance_stats.py", + "sha256": "9009476bb2229a3771f600d2e67aecda5236a9620c976c0acaafd9725e7c57c3", + "language": "Python", + "lines": 313, + "truncated": false, + "block": 9, + "row": 10794 + }, + { + "path": "EEG/Stats/decoding_significance_stats.py", + "sha256": "700a905eb6c1283e6f163be716f3d8562589574ab5df13157cc0736ed444856b", + "language": "Python", + "lines": 288, + "truncated": false, + "block": 9, + "row": 10679 + }, + { + "path": "EEG/Stats/encoding_bootstrapping.py", + "sha256": "9b9739dcfa7a41ed4493255e1de047cf6eb38c554429cb1825e4728d8662ad50", + "language": "Python", + "lines": 382, + "truncated": false, + "block": 9, + "row": 11173 + }, + { + "path": "EEG/Stats/encoding_difference_bootstrapping.py", + "sha256": "5dc0841f85a935bacd5a09931a7e4619b4118ba28ff37d14d0bc09575a7dc2ff", + "language": "Python", + "lines": 530, + "truncated": false, + "block": 9, + "row": 11758 + }, + { + "path": "EEG/Stats/encoding_difference_significance_stats.py", + "sha256": "625e0413a6e935a38867a89f3bce1db57895fab1ba96528323fdcae81548ff18", + "language": "Python", + "lines": 327, + "truncated": false, + "block": 9, + "row": 10880 + }, + { + "path": "EEG/Stats/encoding_significance_stats.py", + "sha256": "9ccc0cd06f560acedd3989accdbfe250302d0dc1e9a2156068358ff77d2a70e1", + "language": "Python", + "lines": 319, + "truncated": false, + "block": 9, + "row": 10803 + }, + { + "path": "LICENSE", + "sha256": "f08fad462ce029936b9119de97699f07c2e925f75c17a1aff6dafa34c1035a8f", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2856 + }, + { + "path": "README.md", + "sha256": "1e4e5de569fc9674a66f5b2f2a5a906be2b987fcc7d8f3b8a700fe4ef061ba2b", + "language": "Text", + "lines": 164, + "truncated": false, + "block": 9, + "row": 14700 + }, + { + "path": "copy_results.sh", + "sha256": "7af178576f66edad063192a4a5a61a687acaf0365c66cd438e6c5d63cdf5ed09", + "language": "Shell", + "lines": 12, + "truncated": false, + "block": 9, + "row": 13966 + } + ] +} \ No newline at end of file diff --git a/manifests/6b/github.com__amjahromizadeh__ferritin-delirium.json b/manifests/6b/github.com__amjahromizadeh__ferritin-delirium.json new file mode 100644 index 0000000000000000000000000000000000000000..971b9f6fb449f5a055af8fe101c4cdbf09183bef --- /dev/null +++ b/manifests/6b/github.com__amjahromizadeh__ferritin-delirium.json @@ -0,0 +1,174 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/amjahromizadeh/ferritin-delirium", + "url": "https://github.com/amjahromizadeh/Ferritin-Delirium", + "host": "github.com", + "commit": "1160c187e6a191803004addd2ad29c1d440ce5f4", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "9e6291c1c4cb6d4c2a332aa9f4bd9d7617dce4bd7a9d8a9473fdb50c841b70a3", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2810 + }, + { + "path": "README.md", + "sha256": "40ee7c94b82e3530c8cb57ec377aa869cd5a9c6da86fb2842e24158e20b9c0f6", + "language": "Text", + "lines": 136, + "truncated": false, + "block": 9, + "row": 14711 + }, + { + "path": "code/Bonferroni Threshold on SMR results.R", + "sha256": "847e6bd48526c33644cf0692cdc29daa55deecb7b2f314def52553fc8a18ae92", + "language": "R", + "lines": 193, + "truncated": false, + "block": 9, + "row": 13512 + }, + { + "path": "code/Delirium x eQTL (whole blood)(APOE region).R", + "sha256": "ce00eb50dabac689e1175456c66f4ba71d24413f1929c004d61f81edf9aa321e", + "language": "R", + "lines": 139, + "truncated": false, + "block": 9, + "row": 13271 + }, + { + "path": "code/Delirium x eQTL(Brain Cortex)(CEACAM19 region).R", + "sha256": "898d9139c59854b25a7243f40a093dcf3f13f27b526f1fab9c8b6f158fa07427", + "language": "R", + "lines": 208, + "truncated": false, + "block": 9, + "row": 13510 + }, + { + "path": "code/Delirium x pQTL(APOE region).R", + "sha256": "6818012d86eddf08af4a02f715de2bfb013cc3b918b96937d0312f6e1478f8ab", + "language": "R", + "lines": 130, + "truncated": false, + "block": 9, + "row": 13267 + }, + { + "path": "code/Delirium x pQTL(METTL25 region).R", + "sha256": "553ca866d28207b4110ab0e26e477f4d307d5972a14263e5c7c52bf996484c85", + "language": "R", + "lines": 104, + "truncated": false, + "block": 9, + "row": 13237 + }, + { + "path": "code/Ferritin CEACAM19 eQTL coloc.R", + "sha256": "e408564b12567e8ddc47cda09eb593e0875c3712edc669e367b7d02dc20221f6", + "language": "R", + "lines": 105, + "truncated": false, + "block": 9, + "row": 13210 + }, + { + "path": "code/Ferritin Delirium coloc.R", + "sha256": "942c2a46044e79125b69b9c94def5eabfa91a8fd73863f3c912d842006add0f0", + "language": "R", + "lines": 142, + "truncated": false, + "block": 9, + "row": 13470 + }, + { + "path": "code/Ferritin SMR results.R", + "sha256": "2b425bcd5f7ec4ea423bc9ff2fbe4455c01f3447925310026784c3c4d4177ccd", + "language": "R", + "lines": 91, + "truncated": false, + "block": 9, + "row": 13125 + }, + { + "path": "code/Ferritin x eQTL(Brain Cortex)(TOMM40 region).R", + "sha256": "4c8f9043ee73482277eba7770a8f41be011e312a3498e66082bb2ac10786b75b", + "language": "R", + "lines": 103, + "truncated": false, + "block": 9, + "row": 13181 + }, + { + "path": "code/Ferritin x eQTL(whole blood)(SLC11A2 region).R", + "sha256": "c271a2b2d5b513e7b5c15c6c092748db780a7b1a0ae9f47c496c26072bd29482", + "language": "R", + "lines": 232, + "truncated": false, + "block": 9, + "row": 13562 + }, + { + "path": "code/Ferritin x pQTL(APOE region).R", + "sha256": "bedcc6e20af298310b513fb0abdbe411c878b64a97a2d998facbf0035762e7c4", + "language": "R", + "lines": 146, + "truncated": false, + "block": 9, + "row": 13332 + }, + { + "path": "code/Ferritin x sQTL(TF, TOMM40 & CEACAM19 regions).R", + "sha256": "2bee5fe64c7393598fcc4db55c99bff2d4abb27aa055dba9ef90d0ce5130efd4", + "language": "R", + "lines": 321, + "truncated": false, + "block": 9, + "row": 13668 + }, + { + "path": "code/Ferritin-Delirium Two sample MR.R", + "sha256": "d43a0f408170e7a530ee06682fe52514ee4f793d1f945f2e6311b545d93f3bb6", + "language": "R", + "lines": 336, + "truncated": false, + "block": 9, + "row": 13690 + }, + { + "path": "code/SuSiE-coloc Ferritin x APOE pQTL.R", + "sha256": "687c45f0c678dec1109efb86283c2faf1a8657265389617f0747ea6fc0141cfc", + "language": "R", + "lines": 215, + "truncated": false, + "block": 9, + "row": 13495 + }, + { + "path": "code/SuSiE-coloc Ferritin x Delirium.R", + "sha256": "51e8272137f5efe52180de045e3d8c0b0f6777d82290374c0355c921417dc6aa", + "language": "R", + "lines": 334, + "truncated": false, + "block": 9, + "row": 13655 + }, + { + "path": "docs/Ferritin-Delirium report.Rmd", + "sha256": "9f2209bc94d70bc37600aec7126047af22dab9b3ada3c52be2db9d9b44461127", + "language": "R", + "lines": 1295, + "truncated": false, + "block": 9, + "row": 13855 + } + ] +} \ No newline at end of file diff --git a/manifests/6b/github.com__rarescandrea__candrea_et_al_2026_gut_microbiota.json b/manifests/6b/github.com__rarescandrea__candrea_et_al_2026_gut_microbiota.json new file mode 100644 index 0000000000000000000000000000000000000000..cb967198b66b93b36aa0a34d2cd533c647d5142b --- /dev/null +++ b/manifests/6b/github.com__rarescandrea__candrea_et_al_2026_gut_microbiota.json @@ -0,0 +1,75 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/rarescandrea/candrea_et_al_2026_gut_microbiota", + "url": "https://www.github.com/RaresCandrea/Candrea_et_al_2026_gut_microbiota", + "host": "github.com", + "commit": "929556c8c6e3be257d072ef799ff8fd2eb885e20", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "01_data_preparation.R", + "sha256": "174a2069e7da8d9991aa3a97eda019b3781a218fc13924b706d5e24eb4cb2dcf", + "language": "R", + "lines": 68, + "truncated": false, + "block": 9, + "row": 12989 + }, + { + "path": "02_LinDA_differential_abundance.R", + "sha256": "045221002d5e77af9ecbf3a53291309d16fff4e5649c9094ccafd5fca8f80721", + "language": "R", + "lines": 132, + "truncated": false, + "block": 9, + "row": 13272 + }, + { + "path": "03_PERMANOVA_beta_diversity.R", + "sha256": "9f1c21e895e71b5236c54dc99825d0e756843fb3873a26516dc009e53227e168", + "language": "R", + "lines": 149, + "truncated": false, + "block": 9, + "row": 13319 + }, + { + "path": "04_Spearman_correlations.R", + "sha256": "1415f39a7d029b0b7372df099559fc45558c16ed076ecb74cfdf343fe9ee481c", + "language": "R", + "lines": 230, + "truncated": false, + "block": 9, + "row": 13545 + }, + { + "path": "05_figures.R", + "sha256": "d5b0e51c7b12a71823260a17470654f87d7b420540ba5e33e13e21026ff76996", + "language": "R", + "lines": 295, + "truncated": false, + "block": 9, + "row": 13657 + }, + { + "path": "LICENSE", + "sha256": "8699c934344c93736e7122139c5243e462c2977188a56b9a9fe1a8dd176392f4", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2794 + }, + { + "path": "README.md", + "sha256": "81c2e6795d46c9172ac15e2d83a3fa1841eaf6cded5025ee5301ea1696a2fbad", + "language": "Text", + "lines": 69, + "truncated": false, + "block": 9, + "row": 14556 + } + ] +} \ No newline at end of file diff --git a/manifests/6c/github.com__psymarker__leida-python.json b/manifests/6c/github.com__psymarker__leida-python.json new file mode 100644 index 0000000000000000000000000000000000000000..c49335dfecef5041ddc39397f82204b7195e79b5 --- /dev/null +++ b/manifests/6c/github.com__psymarker__leida-python.json @@ -0,0 +1,201 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/psymarker/leida-python", + "url": "https://github.com/PSYMARKER/leida-python", + "host": "github.com", + "commit": "0f06c2713795eb05584c5436151e25637f35aed4", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "b5d4462e2584306a8541bb6af9f3e072bfe03fab72e3e873b9a403e69f7bc17f", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2852 + }, + { + "path": "README.md", + "sha256": "cfbf43162383d495aead02c7c839b4b58ba50470b1368f17dda2a851ad6f8154", + "language": "Text", + "lines": 172, + "truncated": false, + "block": 9, + "row": 14726 + }, + { + "path": "pyleida/__init__.py", + "sha256": "ee9322d737f51d00bf0f154cc386f149874910a35b55ebfbbb9e02dad385cdd6", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7526 + }, + { + "path": "pyleida/_data_loader.py", + "sha256": "de5591efdbdf268a2ed19e67312102768d69ba05311e468937c18019ec60c084", + "language": "Python", + "lines": 1310, + "truncated": false, + "block": 9, + "row": 12446 + }, + { + "path": "pyleida/_leida.py", + "sha256": "ee779b256ae8564f310ce0647f44169082328108a8757782667c99a43a535827", + "language": "Python", + "lines": 1611, + "truncated": false, + "block": 9, + "row": 12529 + }, + { + "path": "pyleida/clustering/__init__.py", + "sha256": "047727bebc4b7080e323305ae7c3ff8c182f8e0fb2f21372e9ebf5752fb9170a", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6819 + }, + { + "path": "pyleida/clustering/_clustering.py", + "sha256": "9047d16f72a801dd16baa3025a0e48db68d7b2ab1f90202b4a41257264394ec8", + "language": "Python", + "lines": 973, + "truncated": false, + "block": 9, + "row": 12284 + }, + { + "path": "pyleida/clustering/rsnets_overlap.py", + "sha256": "6cce3f462f05bd8d28e10d23a6e3e75c1fce56e168eb51435b758575b36a8d24", + "language": "Python", + "lines": 228, + "truncated": false, + "block": 9, + "row": 10424 + }, + { + "path": "pyleida/data_utils/__init__.py", + "sha256": "efdcf0af6b40e0dab7d4760cc971e538e9d3cf6a12657c64f8a16a88c9c1175c", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 9, + "row": 6727 + }, + { + "path": "pyleida/data_utils/_data_utils.py", + "sha256": "76ad6eb1e5798b4a7d0dd8cfabe69ba16ed1b824f70910e0bc9eb2a52ed04851", + "language": "Python", + "lines": 268, + "truncated": false, + "block": 9, + "row": 10223 + }, + { + "path": "pyleida/data_utils/validation.py", + "sha256": "c1483faa59229d97966e63df73577c24d60b0fb1482f04ae911731261571409f", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 7839 + }, + { + "path": "pyleida/dynamics_metrics/__init__.py", + "sha256": "3ad37061779d685ba55dd36f27a0f3b6302854c0359c4f2386f7b7f50813cdbc", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 6804 + }, + { + "path": "pyleida/dynamics_metrics/_dynamics_metrics.py", + "sha256": "cb2a39a0495a1082e14f7c4b76de7b0dbe77ba85c90ea6beeefab0389ca0265f", + "language": "Python", + "lines": 677, + "truncated": false, + "block": 9, + "row": 12069 + }, + { + "path": "pyleida/plotting/__init__.py", + "sha256": "c033a3dacf00c5fcce4a77edc1cebb3d43eaca97720fbab08ffecf1b642425f4", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 6872 + }, + { + "path": "pyleida/plotting/_plotting.py", + "sha256": "6af7be6cc38e75544d3724822fc8e395590cd707d2d0a68623aeaaf1ef330252", + "language": "Python", + "lines": 1365, + "truncated": false, + "block": 9, + "row": 12466 + }, + { + "path": "pyleida/plotting/dev_surfer.py", + "sha256": "96f9e45fce3ac7df619a4564fd6e394bc9f8e929d7ecd8ab485a3790fb36b55c", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 9, + "row": 10342 + }, + { + "path": "pyleida/signal_tools/__init__.py", + "sha256": "f06ffffa394bf3b5db99210372875a04c01d92568f9f5f03b603df95b1b1b7ff", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6555 + }, + { + "path": "pyleida/signal_tools/_signal_tools.py", + "sha256": "3f101b326c184856fa4dd672ef88ced7c2fb151ce7059b4cefba78c32be5cd4a", + "language": "Python", + "lines": 325, + "truncated": false, + "block": 9, + "row": 10942 + }, + { + "path": "pyleida/stats/__init__.py", + "sha256": "afdb58d00cf461597b154c81696d627c0181f4abbfcfbd1a19bf83d6f7f37f7b", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6579 + }, + { + "path": "pyleida/stats/_stats.py", + "sha256": "94d3cd1dc8108c51d5c2b629c781b8cec0a1043deabdbac475cb1f40692b0494", + "language": "Python", + "lines": 467, + "truncated": false, + "block": 9, + "row": 11526 + }, + { + "path": "setup.py", + "sha256": "a87ab50ab02d23adeeff8654af3e6b71e7b70796f261c3a25d20eb7e70cc6a63", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7116 + } + ] +} \ No newline at end of file diff --git a/manifests/6c/github.com__ymbouamboua__hudeca.json b/manifests/6c/github.com__ymbouamboua__hudeca.json new file mode 100644 index 0000000000000000000000000000000000000000..c5ee71410c075e35a15eb94f623301aeffd81418 --- /dev/null +++ b/manifests/6c/github.com__ymbouamboua__hudeca.json @@ -0,0 +1,237 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ymbouamboua/hudeca", + "url": "https://github.com/ymbouamboua/HuDeCa", + "host": "github.com", + "commit": "2bd43a819a472b3982789e8d5d4e0bd672530a1e", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "Python/fig6.f-g.ipynb", + "sha256": "4247c68660009d5702fab4bd9487d1ef71ce150fcebcaeaab2b8a2dcdf33ac89", + "language": "Jupyter", + "lines": 227, + "truncated": false, + "block": 9, + "row": 2415 + }, + { + "path": "Python/figS1.ipynb", + "sha256": "440be8cef5d33ced7c6feb3eea1311a229d355dfa4c591e60af33fb5c9021b0a", + "language": "Jupyter", + "lines": 1268, + "truncated": false, + "block": 9, + "row": 2717 + }, + { + "path": "R/000-custom-colors.R", + "sha256": "436a2f43572571eea394ccf5970bc4028fcbfd8fc4f2339a295e136f841c3cdd", + "language": "R", + "lines": 176, + "truncated": false, + "block": 9, + "row": 13211 + }, + { + "path": "R/000-functions.R", + "sha256": "31ee7c6de71c8f903c8c6ec7d1a2623a2e96408a7d805754f36ba11c0675022f", + "language": "R", + "lines": 6024, + "truncated": true, + "block": 9, + "row": 13872 + }, + { + "path": "R/000-qc.Rmd", + "sha256": "a9497549cd39ba05ef2d76a69a7b43a0c58185278cd497bb04e61837e12e26e4", + "language": "R", + "lines": 168, + "truncated": false, + "block": 9, + "row": 13204 + }, + { + "path": "R/001-integration.Rmd", + "sha256": "c8a7ff35bd5275250fa978d3654f0b13b869c840a2f77eed22db3dcc6660824d", + "language": "R", + "lines": 113, + "truncated": false, + "block": 9, + "row": 13120 + }, + { + "path": "R/002-annotation.Rmd", + "sha256": "497d3939969311c9e98dcd36ac6feed5061d88db1e9dabae85864cc336e9dd7b", + "language": "R", + "lines": 638, + "truncated": false, + "block": 9, + "row": 13791 + }, + { + "path": "R/fig1.Rmd", + "sha256": "1611702ef7e32851db013ab1ad6a64454b254e4590231128fc5ee32ab40a06d8", + "language": "R", + "lines": 195, + "truncated": false, + "block": 9, + "row": 13426 + }, + { + "path": "R/fig2.Rmd", + "sha256": "e273a83adcfcad983fd3f67fa63bf42feb7095c9da3a29e8fb82c8d95565f547", + "language": "R", + "lines": 113, + "truncated": false, + "block": 9, + "row": 13196 + }, + { + "path": "R/fig3.Rmd", + "sha256": "6123734fc6b2376874b3dd7952c839877bfb6311a31b034503e689c315ac174d", + "language": "R", + "lines": 638, + "truncated": false, + "block": 9, + "row": 13778 + }, + { + "path": "R/fig4.Rmd", + "sha256": "958b2f84f60383b05e4b7b34b5d859c4030107fb2d29191e0b9b97ccbb19aa66", + "language": "R", + "lines": 371, + "truncated": false, + "block": 9, + "row": 13630 + }, + { + "path": "R/fig6.Rmd", + "sha256": "e88f510719e61ea4c99367f1617bbcbf82aa0ab78be2ac0db1de01d789f0976d", + "language": "R", + "lines": 339, + "truncated": false, + "block": 9, + "row": 13617 + }, + { + "path": "R/figS1.Rmd", + "sha256": "45633dca9f7471bf3e27a8fb463e260823fba2415af131059866608f3c7f9123", + "language": "R", + "lines": 114, + "truncated": false, + "block": 9, + "row": 13114 + }, + { + "path": "R/figS10.Rmd", + "sha256": "293299a537a060f3cf1f52730b7f841657d170e477b2268974161f8239f8ed65", + "language": "R", + "lines": 203, + "truncated": false, + "block": 9, + "row": 13361 + }, + { + "path": "R/figS2.Rmd", + "sha256": "696c6ab4f2fac64c9d5f9b14efdd7ddea1e1b114e2a3ae298ab131b2b05d908f", + "language": "R", + "lines": 337, + "truncated": false, + "block": 9, + "row": 13558 + }, + { + "path": "R/figS3.Rmd", + "sha256": "a49885c3d33666a69d9ddb34c3cf0ffe59e644de032d2b9fba759505e7e56a77", + "language": "R", + "lines": 212, + "truncated": false, + "block": 9, + "row": 13458 + }, + { + "path": "R/figS4.Rmd", + "sha256": "7552b42585643d5ce2083acf9e229a069937a29755bd765af17c70b8b7e52cff", + "language": "R", + "lines": 197, + "truncated": false, + "block": 9, + "row": 13389 + }, + { + "path": "R/figS5.Rmd", + "sha256": "4c686ca641d3fb4b53a574a089fae59a6f5c3676f60b65d6b97b673bfab196aa", + "language": "R", + "lines": 117, + "truncated": false, + "block": 9, + "row": 13190 + }, + { + "path": "R/figS6.Rmd", + "sha256": "f59e557213213a3453a073cf68b2b4a5bc79fcd6308db050955aab3e62f69a53", + "language": "R", + "lines": 143, + "truncated": false, + "block": 9, + "row": 13262 + }, + { + "path": "R/figS9.Rmd", + "sha256": "6113974f27d60c0a22ea84f22fdb225dcf6ebd68efe861db4e04c8a4fa4c935d", + "language": "R", + "lines": 106, + "truncated": false, + "block": 9, + "row": 13140 + }, + { + "path": "README.md", + "sha256": "1b81d23d7f3ce7944765dfc325d3107a2c74585605e8edae556e79f7372289dd", + "language": "Text", + "lines": 6, + "truncated": false, + "block": 9, + "row": 14502 + }, + { + "path": "bash/000-make_bulk_vcf.sh", + "sha256": "99a54d929124cc4c35773deaa43700a4b7193fd45f7ecef1a8a468ff15f437b1", + "language": "Shell", + "lines": 166, + "truncated": false, + "block": 9, + "row": 14342 + }, + { + "path": "bash/000-run_demuxafy.sh", + "sha256": "adbf1ddfa8096e7efc9b71f3c71a3fb597de787ce70535b29eaa97ec20c53bff", + "language": "Shell", + "lines": 68, + "truncated": false, + "block": 9, + "row": 14256 + }, + { + "path": "bash/001-run-combined.sh", + "sha256": "feaf90ea5614f092cf3f972548328a1c88965bade3858f8315fae9dc2c0509e5", + "language": "Shell", + "lines": 27, + "truncated": false, + "block": 9, + "row": 14190 + } + ] +} \ No newline at end of file diff --git a/manifests/6c/zenodo__7526696.json b/manifests/6c/zenodo__7526696.json new file mode 100644 index 0000000000000000000000000000000000000000..c8503b7bda471f6bf7ec765a4b96851a7a255abd --- /dev/null +++ b/manifests/6c/zenodo__7526696.json @@ -0,0 +1,93 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:7526696", + "url": "https://zenodo.org/records/7526696", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "ProstateCancerAnalysis-main.zip/ProstateCancerAnalysis-main/Figure_3_repro.ipynb", + "sha256": "58a03aaacb7d3078d7c6c63a4f9dbff37c5a35fcf12323c4f00d7a9b435ba5fb", + "language": "Jupyter", + "lines": 491, + "truncated": false, + "block": 9, + "row": 2589 + }, + { + "path": "ProstateCancerAnalysis-main.zip/ProstateCancerAnalysis-main/NK.cell.analysis.ipynb", + "sha256": "0ecc5330040e6ed994e5462d2e933acecbacc087067d7f08234d57323576582c", + "language": "Jupyter", + "lines": 92, + "truncated": false, + "block": 9, + "row": 2237 + }, + { + "path": "ProstateCancerAnalysis-main.zip/ProstateCancerAnalysis-main/RCTD.process.Rmd", + "sha256": "4dc493253e7db055af21550851f218cf2f3dc336b773f981b28f8d88d2994004", + "language": "R", + "lines": 252, + "truncated": false, + "block": 9, + "row": 13406 + }, + { + "path": "ProstateCancerAnalysis-main.zip/ProstateCancerAnalysis-main/Tcell.analysis.ipynb", + "sha256": "8a63c16db6a8e136495ab60cc8973a11d4270c684de52570e85b0746937112b0", + "language": "Jupyter", + "lines": 220, + "truncated": false, + "block": 9, + "row": 2395 + }, + { + "path": "ProstateCancerAnalysis-main.zip/ProstateCancerAnalysis-main/fig1.ipynb", + "sha256": "def5891b04f298f5608b4e796000b699f44fcfc5f28ed7c5354ccaeaf77a3000", + "language": "Jupyter", + "lines": 353, + "truncated": false, + "block": 9, + "row": 2482 + }, + { + "path": "ProstateCancerAnalysis-main.zip/ProstateCancerAnalysis-main/myeloid.analysis.ipynb", + "sha256": "30581cda199a5882a1425a1785a3a65612f90961fd09f019abbe340498e582ec", + "language": "Jupyter", + "lines": 198, + "truncated": false, + "block": 9, + "row": 2368 + }, + { + "path": "ProstateCancerAnalysis-main.zip/ProstateCancerAnalysis-main/run.RCTD.R", + "sha256": "d9de533b367fb775d243196fcc101f9bd803d8d1ab76020ab17ff0391f3aa0fd", + "language": "R", + "lines": 138, + "truncated": false, + "block": 9, + "row": 13268 + }, + { + "path": "ProstateCancerAnalysis-main.zip/ProstateCancerAnalysis-main/slide-seq.ano.ipynb", + "sha256": "fa82991977abc8f0e3dd1bac00d68dfa68e56a06db5a6b6a0276699b41f92ab3", + "language": "Jupyter", + "lines": 585, + "truncated": false, + "block": 9, + "row": 2602 + }, + { + "path": "ProstateCancerAnalysis-main.zip/ProstateCancerAnalysis-main/spatial.plot.ipynb", + "sha256": "5eaf0ba61d4ada3d2693339c9f6837b7a8fa37d5f21fe72f943870f7ee260dcf", + "language": "Jupyter", + "lines": 179, + "truncated": false, + "block": 9, + "row": 2350 + } + ] +} \ No newline at end of file diff --git a/manifests/6e/github.com__openfreeenergy__openfe.json b/manifests/6e/github.com__openfreeenergy__openfe.json new file mode 100644 index 0000000000000000000000000000000000000000..cf9f37d31c62da1648f118f58725b0f7b1267a7b --- /dev/null +++ b/manifests/6e/github.com__openfreeenergy__openfe.json @@ -0,0 +1,2010 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/openfreeenergy/openfe", + "url": "https://github.com/OpenFreeEnergy/openfe/tree/v1.7.0", + "host": "github.com", + "commit": "18208178d084a28ecbd93ce48ebea75d6b1b733e", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "451bfbac1087b5a608a73df1c585cb3c6b6f27c48f88f9847eecf2a0b9771b23", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2131 + }, + { + "path": "README.md", + "sha256": "839e7ae76076d2417e5521793119489cfbf738f2f6ca02c57e758f8f4430daa1", + "language": "Text", + "lines": 66, + "truncated": false, + "block": 9, + "row": 14564 + }, + { + "path": "devtools/data/fix_rbfe_results.py", + "sha256": "ba450d6dbc8afb5c5385cc3cd2504c6d9924b6645a3859cefaffc15a9362161b", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6046 + }, + { + "path": "devtools/data/gen_serialized_results.py", + "sha256": "810533b4c8bd9f3b183b8dbe183dd128be4e533c9c390a2ab6a5710ba3e4ed05", + "language": "Python", + "lines": 314, + "truncated": false, + "block": 1, + "row": 8842 + }, + { + "path": "devtools/debug_openmm.sh", + "sha256": "3039dcca71d48fffb61f1905817b50675c067787cc9ef4c20c6492116976026f", + "language": "Shell", + "lines": 31, + "truncated": false, + "block": 1, + "row": 11501 + }, + { + "path": "docs/_ext/sass.py", + "sha256": "7653d25956ba62698bb20f735d5b5eacab1875ac495d5960428ac6009d5cb710", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 1, + "row": 6565 + }, + { + "path": "docs/conf.py", + "sha256": "7ccf2529ef6901afb43abad0473e178fe7ddb4aadb46c3a1a8705c15b6a87f2f", + "language": "Python", + "lines": 258, + "truncated": false, + "block": 9, + "row": 10405 + }, + { + "path": "src/openfe/__init__.py", + "sha256": "3f41683137ab44e631d5d0cc54973255c7b23f5d0eab6a0cff6a29502d99b47c", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 7979 + }, + { + "path": "src/openfe/analysis/__init__.py", + "sha256": "9d3a893680dca29134c54afacda89bbc99bafdaf6aea3fe8980c2732f89be17f", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5122 + }, + { + "path": "src/openfe/analysis/plotting.py", + "sha256": "6218e716387c0bd9ad9153846d7dd5cac1c732c36f7efc7244fdad7c99be0a7d", + "language": "Python", + "lines": 361, + "truncated": false, + "block": 9, + "row": 10940 + }, + { + "path": "src/openfe/data/_downloader.py", + "sha256": "36a5039e8930aeead0e3f669c0d79859225a8cac985753035cae9fdf2dd70944", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6980 + }, + { + "path": "src/openfe/data/_registry.py", + "sha256": "6d57c069fbfdd0bf83ad56680dac03dfd7ba83fe0c95c03b48b386ad89a3befe", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7397 + }, + { + "path": "src/openfe/due.py", + "sha256": "7d13111a41d3dcf5a1cf0619f83bb75a914bac7367f296584b1a913216c73549", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 1, + "row": 6293 + }, + { + "path": "src/openfe/protocols/__init__.py", + "sha256": "d91143de66fda8ad385e7bbc26dfd26ee68554c26194578e18a3be819bae791b", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5102 + }, + { + "path": "src/openfe/protocols/openmm_afe/__init__.py", + "sha256": "ce5266f511c7ca39f6feab398f4da11f8ef05f1c9e5a3ee2fa3567478e8b7507", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7472 + }, + { + "path": "src/openfe/protocols/openmm_afe/abfe_units.py", + "sha256": "38fbfb22f630ad3ffd27b17a12f5a6da026aa1966d5de44b9c3510c7bbb4a7c4", + "language": "Python", + "lines": 533, + "truncated": false, + "block": 9, + "row": 11839 + }, + { + "path": "src/openfe/protocols/openmm_afe/afe_protocol_results.py", + "sha256": "de56ceb6c2f057c598a57c865e38b3581f57a07016cabfb300eeaa4c903bff05", + "language": "Python", + "lines": 562, + "truncated": false, + "block": 9, + "row": 11934 + }, + { + "path": "src/openfe/protocols/openmm_afe/ahfe_units.py", + "sha256": "b9f03212d382de27d584b6e8469836e44bc1e884d1e1564c7908bcac7e1fecfe", + "language": "Python", + "lines": 230, + "truncated": false, + "block": 9, + "row": 10634 + }, + { + "path": "src/openfe/protocols/openmm_afe/base_afe_units.py", + "sha256": "b1ea80fb10f0815a4dbb2633d8b5ec0ef9652ffe0f70d7ed97263a3aee99a15b", + "language": "Python", + "lines": 1710, + "truncated": false, + "block": 9, + "row": 12550 + }, + { + "path": "src/openfe/protocols/openmm_afe/equil_afe_settings.py", + "sha256": "d179f36180b932bd6ced723ecd21e68e9ec62bb06cb520cf2e987cd8a09ae22e", + "language": "Python", + "lines": 470, + "truncated": false, + "block": 9, + "row": 11506 + }, + { + "path": "src/openfe/protocols/openmm_afe/equil_binding_afe_method.py", + "sha256": "e2d785417f54872bda5639cd02acb7317135080d2d9f1c05293b5edf6dfa2079", + "language": "Python", + "lines": 568, + "truncated": false, + "block": 9, + "row": 11954 + }, + { + "path": "src/openfe/protocols/openmm_afe/equil_solvation_afe_method.py", + "sha256": "f1afef9b541112118ae8450fcad4ee92229dcbce9752dcdde392c79439d6de48", + "language": "Python", + "lines": 535, + "truncated": false, + "block": 9, + "row": 11880 + }, + { + "path": "src/openfe/protocols/openmm_md/__init__.py", + "sha256": "72c8ccba0359ea16edd86f25ab774d225df87b50a16d5381006bd6032d0c0a17", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6654 + }, + { + "path": "src/openfe/protocols/openmm_md/plain_md_methods.py", + "sha256": "5be34df76fb5be780e2854e6eb606e8efde3633cae97dcf18dc0538c10acc9b3", + "language": "Python", + "lines": 1124, + "truncated": false, + "block": 9, + "row": 12432 + }, + { + "path": "src/openfe/protocols/openmm_md/plain_md_settings.py", + "sha256": "31e2e44ccf1fcc2499befceb97a421f3fd785a43527d0678338961f303939587", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6071 + }, + { + "path": "src/openfe/protocols/openmm_rfe/__init__.py", + "sha256": "8aa24fe5b2a185f5345199f3946ca07204ecb07f7912a885a7166eaf964bc921", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6666 + }, + { + "path": "src/openfe/protocols/openmm_rfe/_rfe_utils/__init__.py", + "sha256": "bd7cede9556ab1646faa5c35d9a7871c495fb1c3cc7466d1fafc529257afaeb8", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6346 + }, + { + "path": "src/openfe/protocols/openmm_rfe/_rfe_utils/lambdaprotocol.py", + "sha256": "1a5c4b4a359b511027c52490b4de1d2b52e6d51eac3e1428e1931345c3747597", + "language": "Python", + "lines": 340, + "truncated": false, + "block": 9, + "row": 11331 + }, + { + "path": "src/openfe/protocols/openmm_rfe/_rfe_utils/multistate.py", + "sha256": "f188b8b6a757288ed91dc7c23bf07338f86e812cca9fedd1ca53a3362acf1b6e", + "language": "Python", + "lines": 350, + "truncated": false, + "block": 9, + "row": 11313 + }, + { + "path": "src/openfe/protocols/openmm_rfe/_rfe_utils/relative.py", + "sha256": "2a407297038ea90663f03a0d1aec1907076d51a5d67bb202317c741b8c06de9d", + "language": "Python", + "lines": 2718, + "truncated": false, + "block": 9, + "row": 12670 + }, + { + "path": "src/openfe/protocols/openmm_rfe/_rfe_utils/topologyhelpers.py", + "sha256": "0332e1ad7d38dbf17bf30641620d5ebf71a7e112b1e5553f01ac9742c885c255", + "language": "Python", + "lines": 767, + "truncated": false, + "block": 9, + "row": 12191 + }, + { + "path": "src/openfe/protocols/openmm_rfe/equil_rfe_methods.py", + "sha256": "50ab09b975fdabe0991b9d9c83502ed7bc4b4dc21136355b62c850d998fb4d1c", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 7094 + }, + { + "path": "src/openfe/protocols/openmm_rfe/equil_rfe_settings.py", + "sha256": "5f15b7eb9a2b3095677b6372d6970634be422e777252f76bc215f7b7643f5128", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 9, + "row": 9496 + }, + { + "path": "src/openfe/protocols/openmm_rfe/hybridtop_protocol_results.py", + "sha256": "46a9f8cc53795703b21f89987d770513b164c0bf3402b083aa6a12aff5e86bfc", + "language": "Python", + "lines": 246, + "truncated": false, + "block": 9, + "row": 10638 + }, + { + "path": "src/openfe/protocols/openmm_rfe/hybridtop_protocols.py", + "sha256": "92c526d93e36f19118d9cddf6a21d0cc34a6b7d60d6c77ae1f669ab7c928642b", + "language": "Python", + "lines": 769, + "truncated": false, + "block": 9, + "row": 12218 + }, + { + "path": "src/openfe/protocols/openmm_rfe/hybridtop_units.py", + "sha256": "27113346bf8cf3b01a646f181d05825ed4bc8ce8686a6c706359a31c33fa707c", + "language": "Python", + "lines": 1706, + "truncated": false, + "block": 9, + "row": 12559 + }, + { + "path": "src/openfe/protocols/openmm_septop/__init__.py", + "sha256": "875b7df6eede66a853c6c8e3f15de6f66d3737e590777bd12c8413cfa6c4ad8c", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6907 + }, + { + "path": "src/openfe/protocols/openmm_septop/base_units.py", + "sha256": "723037bc00b31a90077b727478f02c58a272484379e50c7b7aaa44806dd6b064", + "language": "Python", + "lines": 1829, + "truncated": false, + "block": 9, + "row": 12573 + }, + { + "path": "src/openfe/protocols/openmm_septop/equil_septop_method.py", + "sha256": "c0811bc9dfb59067cfb970c4ecd6382a21e0cb401890b3667e516a72c429ae75", + "language": "Python", + "lines": 626, + "truncated": false, + "block": 9, + "row": 12034 + }, + { + "path": "src/openfe/protocols/openmm_septop/equil_septop_settings.py", + "sha256": "d76a6b4247adc0b81f028f5ebbd476aac3a1df4022c2adfde92080cb507a9d00", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 9, + "row": 11201 + }, + { + "path": "src/openfe/protocols/openmm_septop/septop_protocol_results.py", + "sha256": "e34b5c401d3c3ee62399d0f5ff364fca2339511346a19ff15e5d14e414fb7ff2", + "language": "Python", + "lines": 522, + "truncated": false, + "block": 9, + "row": 11859 + }, + { + "path": "src/openfe/protocols/openmm_septop/septop_units.py", + "sha256": "fbbe66ae068083f455662615a9155a740404bca1419d04f005525ceb301b7771", + "language": "Python", + "lines": 1423, + "truncated": false, + "block": 9, + "row": 12520 + }, + { + "path": "src/openfe/protocols/openmm_septop/utils.py", + "sha256": "5be387aef4efa8c59dcebee1d8dc986d871327420ae726257eb082de1612381f", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8952 + }, + { + "path": "src/openfe/protocols/openmm_utils/__init__.py", + "sha256": "01ba4719c80b6fe911b091a7c05124b64eeece964e09c058ef8f9805daca546b", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4956 + }, + { + "path": "src/openfe/protocols/openmm_utils/charge_generation.py", + "sha256": "cc02188d357b85f114673c98cd327e083f0e422d3c17b40cac5bc33f2798ef23", + "language": "Python", + "lines": 657, + "truncated": false, + "block": 9, + "row": 12106 + }, + { + "path": "src/openfe/protocols/openmm_utils/mdtraj_utils.py", + "sha256": "4feb322f7309bf065a239ffe455c8a5f842ecc392bea99c62a64f536db2a236f", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 7648 + }, + { + "path": "src/openfe/protocols/openmm_utils/multistate_analysis.py", + "sha256": "361e0231d8d5234ff2bbbdb967a929d5dcf011cd290da8f547481e584f64619e", + "language": "Python", + "lines": 653, + "truncated": false, + "block": 9, + "row": 12067 + }, + { + "path": "src/openfe/protocols/openmm_utils/offmolecule_utils.py", + "sha256": "1accc87d672f6f98b2c32ca42cbfbb2c5bac6f7c1c80cc0c4980adb75cbdf238", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 9, + "row": 9240 + }, + { + "path": "src/openfe/protocols/openmm_utils/omm_compute.py", + "sha256": "5f61feae0aff9a71b352dd856bb72a60f3e024b8921451361389ace23bda3883", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 1, + "row": 6709 + }, + { + "path": "src/openfe/protocols/openmm_utils/omm_settings.py", + "sha256": "5b6a93413c137ef00c469f6630499d0b6b81786ee00a885ea4e70ac825d134a6", + "language": "Python", + "lines": 817, + "truncated": false, + "block": 9, + "row": 12214 + }, + { + "path": "src/openfe/protocols/openmm_utils/serialization.py", + "sha256": "be94a8b0005b28656e110c4d24cbe4a4d9e053506cbb14b7d3054588b8bdc24c", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 9, + "row": 8264 + }, + { + "path": "src/openfe/protocols/openmm_utils/settings_validation.py", + "sha256": "e26283db2f4b02e1d16a32bf7e7d976accbced0b62f7d4e536db5cc9250fd6be", + "language": "Python", + "lines": 315, + "truncated": false, + "block": 9, + "row": 10640 + }, + { + "path": "src/openfe/protocols/openmm_utils/system_creation.py", + "sha256": "8d11d4a9ad9b9b7bfa85bbe2104174af2972b7017f18a417d611a95a8e9f9373", + "language": "Python", + "lines": 270, + "truncated": false, + "block": 9, + "row": 10785 + }, + { + "path": "src/openfe/protocols/openmm_utils/system_validation.py", + "sha256": "d5bb99c1f1abd35c1af726bf9b2918fb79979b321c9bc5e097704e6f40c12b98", + "language": "Python", + "lines": 373, + "truncated": false, + "block": 9, + "row": 11186 + }, + { + "path": "src/openfe/protocols/restraint_utils/geometry/__init__.py", + "sha256": "ce7437e36114e000e3a89d6931e09f5f3f54104205e2097129206d3854c30808", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 1, + "row": 5159 + }, + { + "path": "src/openfe/protocols/restraint_utils/geometry/base.py", + "sha256": "b72060451ea83b8d664fe3f4e02d7378fcf3fa9610cb4fdfb13d33115e9049aa", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 1, + "row": 5808 + }, + { + "path": "src/openfe/protocols/restraint_utils/geometry/boresch/__init__.py", + "sha256": "4b68e801a82fbaa60fcff9af3f43067955fc0bd0a6f2338a0fce3a793a32975b", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5091 + }, + { + "path": "src/openfe/protocols/restraint_utils/geometry/boresch/geometry.py", + "sha256": "494cbe329caf8568205f1aed284308df7dcdb9ffa243111d0a5617fa2fbd354e", + "language": "Python", + "lines": 317, + "truncated": false, + "block": 1, + "row": 8702 + }, + { + "path": "src/openfe/protocols/restraint_utils/geometry/boresch/guest.py", + "sha256": "935e61b19796edd93b7e3822f64acb3ec7d00a9da9a1ab18999886798f0db7fa", + "language": "Python", + "lines": 247, + "truncated": false, + "block": 1, + "row": 8057 + }, + { + "path": "src/openfe/protocols/restraint_utils/geometry/boresch/host.py", + "sha256": "f590699a0b5abd8b94c181056236aed816fea7a2f4dc723556211d7dc3d006f0", + "language": "Python", + "lines": 784, + "truncated": false, + "block": 9, + "row": 12182 + }, + { + "path": "src/openfe/protocols/restraint_utils/geometry/flatbottom.py", + "sha256": "a7a62fab8cb7c6d44fef3aa6c101b6a411a9113ee6e8be74566ba562b2b36516", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 1, + "row": 7125 + }, + { + "path": "src/openfe/protocols/restraint_utils/geometry/harmonic.py", + "sha256": "8cab974f2cf9dbd62ba724327248b8deebc11d86b0e14be20bc1e9dbcff1c49b", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 1, + "row": 6883 + }, + { + "path": "src/openfe/protocols/restraint_utils/geometry/utils.py", + "sha256": "ff6d434ca18e162341e3d7a90096e71795521d04416da549351477726ddf27bf", + "language": "Python", + "lines": 789, + "truncated": false, + "block": 1, + "row": 9502 + }, + { + "path": "src/openfe/protocols/restraint_utils/openmm/omm_forces.py", + "sha256": "4d242736cb60666d9daece0124982c36db62666b85707f2019ad26051aa41d8f", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 1, + "row": 7025 + }, + { + "path": "src/openfe/protocols/restraint_utils/openmm/omm_restraints.py", + "sha256": "9893740ee23b472fbc43d1cfb06744ede723e21316acee9b5fde5bc06f82d89b", + "language": "Python", + "lines": 685, + "truncated": false, + "block": 1, + "row": 9454 + }, + { + "path": "src/openfe/protocols/restraint_utils/settings.py", + "sha256": "015e71b7e03085f7aef7521fe6e8cebca284616481fafb5607759f5bd8944f0e", + "language": "Python", + "lines": 227, + "truncated": false, + "block": 9, + "row": 10451 + }, + { + "path": "src/openfe/setup/__init__.py", + "sha256": "532ecbb316c7f9764bda86e857a52a06a0cc5eb33e160306721517d39a1d817e", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6657 + }, + { + "path": "src/openfe/setup/alchemical_network_planner/__init__.py", + "sha256": "3f5eeb2482d9ed8fd40e003190c57d66c3785f36a4467124fc4eeabdb826a9e7", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5183 + }, + { + "path": "src/openfe/setup/alchemical_network_planner/abstract_alchemical_network_planner.py", + "sha256": "2d4d5af0e043d486f6eccfbc1d20ce5cd9c4bc829a3b754fc54f399a935991f5", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5379 + }, + { + "path": "src/openfe/setup/alchemical_network_planner/relative_alchemical_network_planner.py", + "sha256": "7dcd81a70bad572fb837ee28e002f4ba8cbb160c96b456fe2fb3b59bb76e35d3", + "language": "Python", + "lines": 388, + "truncated": false, + "block": 9, + "row": 11392 + }, + { + "path": "src/openfe/setup/atom_mapping/__init__.py", + "sha256": "cc14e1ff8a9b3f84af3965de313b05b44597d1728d8c02f3c3db0aa510cd89a7", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6434 + }, + { + "path": "src/openfe/setup/atom_mapping/ligandatommapper.py", + "sha256": "f9ecfc10e478d4b21184d6f89b378e4cf49ae23a6112239a1126abecf94147f7", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6341 + }, + { + "path": "src/openfe/setup/atom_mapping/lomap_mapper.py", + "sha256": "ee7f9f72e6e4c719e4dc614a30c41962f1d874de8a166a1946ae83eee3180b38", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5184 + }, + { + "path": "src/openfe/setup/atom_mapping/lomap_scorers.py", + "sha256": "b1e70505d63aa6cd1fac3a69f9c421fa18ccfbd077fcd3cc6c9da2e2305f9a17", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5387 + }, + { + "path": "src/openfe/setup/chemicalsystem_generator/__init__.py", + "sha256": "c9a203944648bfe3d85e1e8d27ca290f4d59d33bc2d33e85f4b23775109b8754", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 1, + "row": 5197 + }, + { + "path": "src/openfe/setup/chemicalsystem_generator/abstract_chemicalsystem_generator.py", + "sha256": "dfb39792d65028151216c41445be54952996a75b4190a1c77271d1ebe2cd97a3", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 1, + "row": 5511 + }, + { + "path": "src/openfe/setup/chemicalsystem_generator/easy_chemicalsystem_generator.py", + "sha256": "52019bd58b89e1dc1235d57b88fc3158a388f48a8fb177ecbf27aefd23111a11", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 9, + "row": 9336 + }, + { + "path": "src/openfe/setup/ligand_network_planning.py", + "sha256": "d605bacbf4044059e9082207e25fbce774924da5977381cb062ef39b5495d087", + "language": "Python", + "lines": 471, + "truncated": false, + "block": 1, + "row": 9051 + }, + { + "path": "src/openfe/tests/analysis/test_plotting.py", + "sha256": "d93a679d4d9c8fb554ca9f917e2af40cd688b6743770a81388103f565543a275", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 9, + "row": 10656 + }, + { + "path": "src/openfe/tests/conftest.py", + "sha256": "b037a215cac96636b61c76d45d58a69f8b26aff7e04c653956a46efd23ddc3ae", + "language": "Python", + "lines": 887, + "truncated": false, + "block": 9, + "row": 12231 + }, + { + "path": "src/openfe/tests/data/external_formats/__init__.py", + "sha256": "01ba4719c80b6fe911b091a7c05124b64eeece964e09c058ef8f9805daca546b", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4956 + }, + { + "path": "src/openfe/tests/data/openmm_afe/__init__.py", + "sha256": "01ba4719c80b6fe911b091a7c05124b64eeece964e09c058ef8f9805daca546b", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4956 + }, + { + "path": "src/openfe/tests/data/openmm_md/__init__.py", + "sha256": "01ba4719c80b6fe911b091a7c05124b64eeece964e09c058ef8f9805daca546b", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4956 + }, + { + "path": "src/openfe/tests/dev/serialization_test_templates.py", + "sha256": "c12007957d95c3276b0e5e22942f85484ad83e3d377b206636b5eee3663bcfd5", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 7638 + }, + { + "path": "src/openfe/tests/protocols/conftest.py", + "sha256": "2dee684ffa8b3a15cae53ae4f702c52a82b33b76a6e28a6fe802febcac8bfed7", + "language": "Python", + "lines": 548, + "truncated": false, + "block": 9, + "row": 11653 + }, + { + "path": "src/openfe/tests/protocols/openmm_abfe/conftest.py", + "sha256": "a7020ec4df5f8e4898fd20d1ab50e9cccab9af832d9241d9e166094e823a27e2", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5697 + }, + { + "path": "src/openfe/tests/protocols/openmm_abfe/test_abfe_energies.py", + "sha256": "06b76db9781d872cdbad5bc967b030879a6a539de4f7862997be1ef1878d3cb5", + "language": "Python", + "lines": 281, + "truncated": false, + "block": 9, + "row": 10818 + }, + { + "path": "src/openfe/tests/protocols/openmm_abfe/test_abfe_protocol.py", + "sha256": "3844aa6b53287957e1c250c28274f3a029e3f16b0b4f37281166b40bb0395677", + "language": "Python", + "lines": 830, + "truncated": false, + "block": 9, + "row": 12213 + }, + { + "path": "src/openfe/tests/protocols/openmm_abfe/test_abfe_protocol_results.py", + "sha256": "1b989def45517b78ca30e209b0233105ed4d7e243bc980dd056a6ced504e305c", + "language": "Python", + "lines": 313, + "truncated": false, + "block": 9, + "row": 11108 + }, + { + "path": "src/openfe/tests/protocols/openmm_abfe/test_abfe_settings.py", + "sha256": "84e2d59c87430a6369f6b789b82c7ff1f49c766b61de3aa038078e62a5d77553", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 9, + "row": 8840 + }, + { + "path": "src/openfe/tests/protocols/openmm_abfe/test_abfe_slow.py", + "sha256": "1dd01a552169bad2adee3f5908bb05abdc114c6625709bcc6a3218fe3545adab", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 9, + "row": 9660 + }, + { + "path": "src/openfe/tests/protocols/openmm_abfe/test_abfe_tokenization.py", + "sha256": "80e0aeb074a14a052df34905632b1b96f3dcdd0a63cd81f07f5d532a8e5be3a8", + "language": "Python", + "lines": 161, + "truncated": false, + "block": 9, + "row": 9231 + }, + { + "path": "src/openfe/tests/protocols/openmm_abfe/test_abfe_validation.py", + "sha256": "a25c38ebd66eef69176b578e07f03af0af3aa6b9e1d0a91ac9f3668396ed9e7b", + "language": "Python", + "lines": 350, + "truncated": false, + "block": 9, + "row": 11038 + }, + { + "path": "src/openfe/tests/protocols/openmm_abfe/utils.py", + "sha256": "aed14e60babe55d8aeb325e3d8840331d3b228054443b3d310621de026bdc3a3", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6927 + }, + { + "path": "src/openfe/tests/protocols/openmm_ahfe/test_ahfe_protocol.py", + "sha256": "49ef938c6701196d04155567bbc13fdb1b0710313f35dae89ad08c8aae7fa98e", + "language": "Python", + "lines": 777, + "truncated": false, + "block": 9, + "row": 12154 + }, + { + "path": "src/openfe/tests/protocols/openmm_ahfe/test_ahfe_protocol_results.py", + "sha256": "3f58c929472c85e239e8b31806db1b9991d2190b7c3980d444498b4c11263641", + "language": "Python", + "lines": 296, + "truncated": false, + "block": 9, + "row": 10954 + }, + { + "path": "src/openfe/tests/protocols/openmm_ahfe/test_ahfe_resume.py", + "sha256": "76ed3373c755f250094bbebd4eebe25d5314b95bafd27fbcd72bf209c444ed4e", + "language": "Python", + "lines": 551, + "truncated": false, + "block": 9, + "row": 11896 + }, + { + "path": "src/openfe/tests/protocols/openmm_ahfe/test_ahfe_settings.py", + "sha256": "69580b9c43d4b779a049c5e617710c8262ed467ffcb37b617430a4360b90ed33", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 1, + "row": 6176 + }, + { + "path": "src/openfe/tests/protocols/openmm_ahfe/test_ahfe_slow.py", + "sha256": "314f1f6a18ac54bf1d518b4c307e675ef7ca8ebc15077e43fd24e984fc9f9387", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 9392 + }, + { + "path": "src/openfe/tests/protocols/openmm_ahfe/test_ahfe_tokenization.py", + "sha256": "fe4ea2211b72dcb392ea992647d76dd2a0a85d84a939f0a5d4c666986e434a30", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 9, + "row": 9218 + }, + { + "path": "src/openfe/tests/protocols/openmm_ahfe/test_ahfe_validation.py", + "sha256": "98e0b411d47132b433c6c12a3261bee2b285977f669725acdc8187e1037f138d", + "language": "Python", + "lines": 467, + "truncated": false, + "block": 9, + "row": 11602 + }, + { + "path": "src/openfe/tests/protocols/openmm_ahfe/utils.py", + "sha256": "101a19cf4253658f8adab3b8919d48a8dade9a36228f47086c51b146815dfb27", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 6933 + }, + { + "path": "src/openfe/tests/protocols/openmm_md/test_plain_md_protocol.py", + "sha256": "514b040210c31c0bb01b948143fac6df497ab4bc0c4c2ee9c791cf8879228e9e", + "language": "Python", + "lines": 674, + "truncated": false, + "block": 9, + "row": 11987 + }, + { + "path": "src/openfe/tests/protocols/openmm_md/test_plain_md_resume.py", + "sha256": "6c57fa680c2dc01ec9efb460db95304278ab71dd437cbd3b9980370118d75708", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 9, + "row": 10080 + }, + { + "path": "src/openfe/tests/protocols/openmm_md/test_plain_md_slow.py", + "sha256": "75f41d403d2272e09446b38d83ce5a90fad41468c19ce31148ee8ca71788c10e", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 9, + "row": 9361 + }, + { + "path": "src/openfe/tests/protocols/openmm_md/test_plain_md_tokenization.py", + "sha256": "f6b00022c10d65ff2cacff65f8fe60ca44087a827cf11d6e3f45ede3eae2b026", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 8469 + }, + { + "path": "src/openfe/tests/protocols/openmm_rfe/helpers.py", + "sha256": "2425dd03519077e55a2834f58f9ea9605fe79dec783621c65d81bec044b65bc4", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 1, + "row": 8210 + }, + { + "path": "src/openfe/tests/protocols/openmm_rfe/test_hybrid_factory.py", + "sha256": "21556278ea165cd858c179ef5b414e16d6209dfe302df6088e28a11d80b8ed6b", + "language": "Python", + "lines": 2109, + "truncated": false, + "block": 9, + "row": 12648 + }, + { + "path": "src/openfe/tests/protocols/openmm_rfe/test_hybrid_top_protocol.py", + "sha256": "157d586b22afb2841ebf8cdcfc80b6cf01b11689377f8f39aad92d8d5e12e566", + "language": "Python", + "lines": 2663, + "truncated": false, + "block": 9, + "row": 12653 + }, + { + "path": "src/openfe/tests/protocols/openmm_rfe/test_hybrid_top_resume.py", + "sha256": "0d9ea7b95f3e95566e64f8f0dadfcd86e2df0ea912377d5de563b07ed62d3a48", + "language": "Python", + "lines": 503, + "truncated": false, + "block": 9, + "row": 11800 + }, + { + "path": "src/openfe/tests/protocols/openmm_rfe/test_hybrid_top_slow.py", + "sha256": "cd2b5d9bf3ee03c4ed33137af972b869e3ff8d6ea679a1bb913de7e36d43adfb", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 9, + "row": 10356 + }, + { + "path": "src/openfe/tests/protocols/openmm_rfe/test_hybrid_top_tokenization.py", + "sha256": "ef332fea97f2a47e89f198d3830229445e99218b3e6ff42841b887d8fcf8699e", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 9, + "row": 9442 + }, + { + "path": "src/openfe/tests/protocols/openmm_rfe/test_hybrid_top_validation.py", + "sha256": "96e74f28799517ababe4a8c33c9b3d8a1ba56993a8b096cc6d4ab29c5ba8dd57", + "language": "Python", + "lines": 610, + "truncated": false, + "block": 9, + "row": 11791 + }, + { + "path": "src/openfe/tests/protocols/openmm_septop/conftest.py", + "sha256": "936a6885b5c023882a72d52b5788802380f54ad569fed5eff5f391146a95118e", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6882 + }, + { + "path": "src/openfe/tests/protocols/openmm_septop/test_septop_protocol.py", + "sha256": "dc8bea243125874deafb48402f7e44d16806bf3ff17efb5bda16f96cb4e59bc8", + "language": "Python", + "lines": 1336, + "truncated": false, + "block": 9, + "row": 12484 + }, + { + "path": "src/openfe/tests/protocols/openmm_septop/test_septop_protocol_analysis.py", + "sha256": "89d0d7dd9cb5c36335f17c3b73a8d1823fad5e43036a4c21edbacb64fa66d380", + "language": "Python", + "lines": 262, + "truncated": false, + "block": 9, + "row": 10832 + }, + { + "path": "src/openfe/tests/protocols/openmm_septop/test_septop_protocol_results.py", + "sha256": "9fac491042a296371207f4cc91b09f485c162393c2e91ccdbe24008c9c0e6789", + "language": "Python", + "lines": 342, + "truncated": false, + "block": 9, + "row": 11124 + }, + { + "path": "src/openfe/tests/protocols/openmm_septop/test_septop_resume.py", + "sha256": "c71cadc36230eec275884d5858aa96ec84f211aff9bd75e7a1cd0872d764a380", + "language": "Python", + "lines": 545, + "truncated": false, + "block": 9, + "row": 11774 + }, + { + "path": "src/openfe/tests/protocols/openmm_septop/test_septop_settings.py", + "sha256": "5384dea369e36919589e40f7d8eb85a51f240db9eba54a452c38a30523ed7625", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 9, + "row": 9215 + }, + { + "path": "src/openfe/tests/protocols/openmm_septop/test_septop_slow.py", + "sha256": "2d097bfd3f9c22a01f555e387fe7744a57bdb60ccf429b60d98dc91cefb2fdaf", + "language": "Python", + "lines": 338, + "truncated": false, + "block": 9, + "row": 11244 + }, + { + "path": "src/openfe/tests/protocols/openmm_septop/test_septop_tokenization.py", + "sha256": "627a6683fc9af68c2f82ceab296e9ee88a20a45e6e350b7ba77f6180ddb4e94c", + "language": "Python", + "lines": 216, + "truncated": false, + "block": 9, + "row": 9896 + }, + { + "path": "src/openfe/tests/protocols/openmm_septop/test_septop_validation.py", + "sha256": "304a61aab6689f42d43f4c8a395e7dc2b751f83a56f03f20228fa70ee85815fb", + "language": "Python", + "lines": 295, + "truncated": false, + "block": 9, + "row": 10697 + }, + { + "path": "src/openfe/tests/protocols/openmm_septop/utils.py", + "sha256": "9f1931df3f98dec7134f8b5d244eb3a0a833f5d624beb38864d313d05678d387", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6935 + }, + { + "path": "src/openfe/tests/protocols/restraints/test_geometry_base.py", + "sha256": "000e0ccf5cb083cecb554e1c83fb75295a768e9245cb9d6f0bff29e47f0b7ac3", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5528 + }, + { + "path": "src/openfe/tests/protocols/restraints/test_geometry_boresch.py", + "sha256": "67bf14cbd838846d43143a82744fcb0b8b5b4f61901ce2838b69a875b8fdb64e", + "language": "Python", + "lines": 336, + "truncated": false, + "block": 9, + "row": 11317 + }, + { + "path": "src/openfe/tests/protocols/restraints/test_geometry_boresch_guest.py", + "sha256": "67e53a95314c4fd8d96e350d5e46d89f6b8bb782b1f1b5e76192d9baecf3e0df", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 1, + "row": 7031 + }, + { + "path": "src/openfe/tests/protocols/restraints/test_geometry_boresch_host.py", + "sha256": "eba6ba2becbbb462b1a438f2540d981eb80d3fdf2e87d55d979abcb2caa31d23", + "language": "Python", + "lines": 425, + "truncated": false, + "block": 9, + "row": 11568 + }, + { + "path": "src/openfe/tests/protocols/restraints/test_geometry_flatbottom.py", + "sha256": "badd1a4ffb5d0a1f3695c0586631e3c2c581090dab6c20d6a17bdaf1afbbff87", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 1, + "row": 6924 + }, + { + "path": "src/openfe/tests/protocols/restraints/test_geometry_harmonic.py", + "sha256": "9ac6655dcc40ae739edb30d08e12fb3a7ecc6e507b50a08561c248469564b746", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 1, + "row": 6878 + }, + { + "path": "src/openfe/tests/protocols/restraints/test_geometry_utils.py", + "sha256": "5f77e95ba4ec1514102ec7e79b906f71d7fa16276e94355b5e5495c743482f79", + "language": "Python", + "lines": 619, + "truncated": false, + "block": 9, + "row": 11809 + }, + { + "path": "src/openfe/tests/protocols/restraints/test_omm_restraints.py", + "sha256": "04f4397f8d348d7b0a8ab73642ebbcc5f030dca3a40f5c39448d3fa848efd3cc", + "language": "Python", + "lines": 334, + "truncated": false, + "block": 9, + "row": 11345 + }, + { + "path": "src/openfe/tests/protocols/restraints/test_openmm_forces.py", + "sha256": "c8e8fa59363fba4333fe34ff588e4e5a33dca1bf5befd18ab23aaad7d216aa76", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 1, + "row": 7130 + }, + { + "path": "src/openfe/tests/protocols/restraints/test_settings.py", + "sha256": "3b623b94ca95ef6fb68f4f0fdd24824619c96b187092441772f57ded7ca5be88", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 8709 + }, + { + "path": "src/openfe/tests/protocols/test_openmm_settings.py", + "sha256": "5dde301fa02e040e5b46c5f3c0ef9d98b0b3901ddf86055f0703b5e170f136f3", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 1, + "row": 7015 + }, + { + "path": "src/openfe/tests/protocols/test_openmmutils.py", + "sha256": "f7fe959ddfae9dafd7d32e96fa0126fd9d6f7a084be22e2d4683a789ae42626a", + "language": "Python", + "lines": 1595, + "truncated": false, + "block": 9, + "row": 12540 + }, + { + "path": "src/openfe/tests/protocols/test_openmmutils_serialization.py", + "sha256": "ff9e5118bb2c7655e1f31240ab60eaf54c88713b450e5b39d635d49796a95bdc", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 7893 + }, + { + "path": "src/openfe/tests/setup/alchemical_network_planner/edge_types.py", + "sha256": "e7f4f79e440be803a16eda133c8e3a3e31206505586f9f98b222065fea78c6ea", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 5842 + }, + { + "path": "src/openfe/tests/setup/alchemical_network_planner/test_relative_alchemical_network_planner.py", + "sha256": "7db893b4352ca694dbb95dc839ab2dcb0980282f428f80fcb0630ab93099a380", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 9, + "row": 9810 + }, + { + "path": "src/openfe/tests/setup/atom_mapping/test_atommapper.py", + "sha256": "9bb6938911c5e7f4d93a27b48de3b98285dbbe62058d8403d60b8b8a7babbe80", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 6209 + }, + { + "path": "src/openfe/tests/setup/atom_mapping/test_lomap_atommapper.py", + "sha256": "30684e8f299b4090f83ad4d2d038a515543a11b92e5e8519533825e0d2076ffb", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 8897 + }, + { + "path": "src/openfe/tests/setup/atom_mapping/test_lomap_scorers.py", + "sha256": "b107bf37611605747098a9685477a171bab96c3046e47f78c9f59a17b09f781f", + "language": "Python", + "lines": 346, + "truncated": false, + "block": 9, + "row": 10906 + }, + { + "path": "src/openfe/tests/setup/chemicalsystem_generator/component_checks.py", + "sha256": "68b34dffc09d7fe43fc5abc64be7929525e481bb4190da6f436f235d9b73cfd9", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 1, + "row": 5535 + }, + { + "path": "src/openfe/tests/setup/chemicalsystem_generator/test_easy_chemicalsystem_generator.py", + "sha256": "7d2b87f731815019fe847033c1508656de2cdd8761e93acf970df5b9ca1a84fd", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 1, + "row": 7460 + }, + { + "path": "src/openfe/tests/setup/test_network_planning.py", + "sha256": "71f73ced867d3352b0b2daf0c3b7e7d7c0682e516b7370861029fc04b3fd6fd0", + "language": "Python", + "lines": 793, + "truncated": false, + "block": 9, + "row": 12232 + }, + { + "path": "src/openfe/tests/utils/conftest.py", + "sha256": "222f499f5fa4915b09f6a976fb2464a85472c2610b1688d7c13502b7ef3f684e", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 1, + "row": 6184 + }, + { + "path": "src/openfe/tests/utils/test_atommapping_network_plotting.py", + "sha256": "80bcccb04a188d8825fc7585c79af86f058931bab9401c5287fee15d00baa978", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 1, + "row": 7829 + }, + { + "path": "src/openfe/tests/utils/test_duecredit.py", + "sha256": "a02064ee51439fb2c919f087be08fa30e28f1398144ebf1e1a954458f46a10a0", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 7972 + }, + { + "path": "src/openfe/tests/utils/test_log_control.py", + "sha256": "5df4358972d7b882a7150b54eeaa33632e7fa5dec1270d4b3fc68425eb2c4d74", + "language": "Python", + "lines": 518, + "truncated": false, + "block": 1, + "row": 9165 + }, + { + "path": "src/openfe/tests/utils/test_network_plotting.py", + "sha256": "e3a745ea7e2118bbbe2d0fed45044fe6f07689f197527fe699d04163ca0a7025", + "language": "Python", + "lines": 567, + "truncated": false, + "block": 1, + "row": 9321 + }, + { + "path": "src/openfe/tests/utils/test_optional_imports.py", + "sha256": "bedaf0fa423b5e7095b825f17ff049b9fe29b527ba7bb1dc7f6ada92a1614108", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5268 + }, + { + "path": "src/openfe/tests/utils/test_remove_oechem.py", + "sha256": "809d40efb7af1da5dab95c1bb26dd34b1e58b199da59a1653156dcfe9ccc4216", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5570 + }, + { + "path": "src/openfe/tests/utils/test_system_probe.py", + "sha256": "8a8c3578d3911a6ae353fe7313e80e672c12bb18dde9a894b64779bcaca7bbf2", + "language": "Python", + "lines": 492, + "truncated": false, + "block": 9, + "row": 11613 + }, + { + "path": "src/openfe/tests/utils/test_visualization_3D.py", + "sha256": "b9778f8749e6c351c4638f89ee1b437f6bc20b50f32e1b5c42f329cad77a7e4a", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6273 + }, + { + "path": "src/openfe/utils/__init__.py", + "sha256": "82027ddc6d1cc6b0e4d72c80886e0d001ee2f2ef12fd1f415332dca73db7f0e9", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5239 + }, + { + "path": "src/openfe/utils/atommapping_network_plotting.py", + "sha256": "6a4e18650e73da4d1c0dd7c73efeeade873a7a3e4bcb44ca43bafc5927f57197", + "language": "Python", + "lines": 178, + "truncated": false, + "block": 9, + "row": 9823 + }, + { + "path": "src/openfe/utils/custom_typing.py", + "sha256": "c1b3f050034f3bf3e8e56aad1d29c6c96c414231bca86972f03e0150113e10c4", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5438 + }, + { + "path": "src/openfe/utils/ligand_utils.py", + "sha256": "ecb5f9f130b91e97dd015f0a48438bf439b11d48802b9cc1192c6c15b46e193b", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5482 + }, + { + "path": "src/openfe/utils/logging_control.py", + "sha256": "0136a126291f023ec0dae479259dc8e8a03e333874793f9de2e8c6f02da8bc37", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 9, + "row": 9331 + }, + { + "path": "src/openfe/utils/network_plotting.py", + "sha256": "cefecb06c0b6fa35208b1de98709294f651ce7d57428ba2ff160c6b1ade1441e", + "language": "Python", + "lines": 426, + "truncated": false, + "block": 9, + "row": 11512 + }, + { + "path": "src/openfe/utils/optional_imports.py", + "sha256": "47147b6f6a345ebf500fe485ccf29bef150ac28cb5032b882d454e423dc2c331", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7275 + }, + { + "path": "src/openfe/utils/remove_oechem.py", + "sha256": "3dd0ee793a50e324e7058223211dbcbc12d57a939bd4848b9ddc1e02003fcbd7", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 1, + "row": 5753 + }, + { + "path": "src/openfe/utils/silence_root_logging.py", + "sha256": "5747f4a5385b37786f5d7dcc703e21686ca7875f6fa2cedf989f3a53edd31450", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5449 + }, + { + "path": "src/openfe/utils/system_probe.py", + "sha256": "9f182d722c16dd5ee4dad0b44742061c020d01370b9c2d980c3493857cf91901", + "language": "Python", + "lines": 545, + "truncated": false, + "block": 1, + "row": 9218 + }, + { + "path": "src/openfe/utils/visualization_3D.py", + "sha256": "54e7bf0d83d95a88d448872bda7a92fa0c620d14d9e23d74638ac8a2adeffef8", + "language": "Python", + "lines": 239, + "truncated": false, + "block": 1, + "row": 7985 + }, + { + "path": "src/openfecli/__init__.py", + "sha256": "2cdbf0a7b50ee4740a3a3488c12671898618dbd654211750b9d9b7aaa14080d2", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5195 + }, + { + "path": "src/openfecli/cli.py", + "sha256": "e0a3d4eaf1e376d61a1099c36500f00de613f7bd0587ec055d000fde8337d35b", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 7486 + }, + { + "path": "src/openfecli/clicktypes/__init__.py", + "sha256": "a9bd1443970761e04d984afcaec7d7f4edb776610e890aa270158d964c20b8c6", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 5008 + }, + { + "path": "src/openfecli/clicktypes/hyphenchoice.py", + "sha256": "82db081c1d63bca449c1183aff51d9380abcfb0c3070be2764da598412deae73", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5347 + }, + { + "path": "src/openfecli/commands/atommapping.py", + "sha256": "ac887b6aa9fd77e99df84026e85d1488dfd2acff857bec07129c7a1a6e034a67", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 1, + "row": 6884 + }, + { + "path": "src/openfecli/commands/fetch.py", + "sha256": "16180d8a98f6adca44cf3beb54fec349ab88b804a36af728831d9bb841a71c63", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 1, + "row": 6170 + }, + { + "path": "src/openfecli/commands/gather.py", + "sha256": "c2f9ecfc43ab02e2f0bb61ef62a1a790220abb136512f2c1a8fd5f9321fe1f2d", + "language": "Python", + "lines": 832, + "truncated": false, + "block": 9, + "row": 12206 + }, + { + "path": "src/openfecli/commands/gather_abfe.py", + "sha256": "4a19e00acf061c5d49be8398a0fddac1072052eab36d3895d8bbe1bb384555e0", + "language": "Python", + "lines": 367, + "truncated": false, + "block": 9, + "row": 11166 + }, + { + "path": "src/openfecli/commands/gather_septop.py", + "sha256": "fe4be32b565e111ffb96178663df159b3697219b89cf409988bc5282a9ad63f2", + "language": "Python", + "lines": 458, + "truncated": false, + "block": 9, + "row": 11452 + }, + { + "path": "src/openfecli/commands/generate_partial_charges.py", + "sha256": "c3fb42dc919ed543bed90fea4f86b44c253135dae020714a867e94342fb15377", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 8822 + }, + { + "path": "src/openfecli/commands/plan_rbfe_network.py", + "sha256": "42801a2ce74e07438e5b7489a4dc5080b637157a463aa863a713eaa6df0ac729", + "language": "Python", + "lines": 259, + "truncated": false, + "block": 9, + "row": 10813 + }, + { + "path": "src/openfecli/commands/plan_rhfe_network.py", + "sha256": "790d7a663f7e6898f99ec7ccf38ac63e69719688aa527f775bc77e58bce0a04c", + "language": "Python", + "lines": 220, + "truncated": false, + "block": 1, + "row": 8132 + }, + { + "path": "src/openfecli/commands/quickrun.py", + "sha256": "65604810170c74f3c321f2b1070cf84466bc111c9625361b1a7de8d5029ec2c4", + "language": "Python", + "lines": 209, + "truncated": false, + "block": 9, + "row": 10365 + }, + { + "path": "src/openfecli/commands/test.py", + "sha256": "e5d50473fb6b88a5ddab3289fdffdc744ccdd3adee2e7082d072ad946666a824", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 8007 + }, + { + "path": "src/openfecli/commands/view_ligand_network.py", + "sha256": "80b9db0699c960bd40a3fa75b3ec67cbfa8a0ef5ab66369cd1d76a1d647f72c6", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5698 + }, + { + "path": "src/openfecli/data/_registry.py", + "sha256": "99e86a02d765aeeab9a82b8ac31d3838ef199feded96415c23d381d652a9673b", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7167 + }, + { + "path": "src/openfecli/fetchables.py", + "sha256": "55afe294be8b1d8774c0a3f22f3bc893ea9d16302520939205ba588a07af24ca", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 1, + "row": 5702 + }, + { + "path": "src/openfecli/fetching.py", + "sha256": "72771b72b9010e059538af4ad81de96c9ccaee7edfc79e548a3beead812e04d2", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 1, + "row": 7403 + }, + { + "path": "src/openfecli/parameters/__init__.py", + "sha256": "4593e1ab488438daad04f29a64ad5277cfe25aa7381c7c7d0076eeb5b7040f1f", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 9, + "row": 6617 + }, + { + "path": "src/openfecli/parameters/mapper.py", + "sha256": "2ce2feaf215515bd1b2999c75042066373ad04b1dcf455d8dc64f566ffc9971b", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 1, + "row": 5680 + }, + { + "path": "src/openfecli/parameters/misc.py", + "sha256": "50ed4281006ee507e066f49fe8188032a1fff486415e8843c7db6e768cbac5c2", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5637 + }, + { + "path": "src/openfecli/parameters/mol.py", + "sha256": "50e223d8e5c292fe84716e0c2256694c2581fc27ad9943223fe389ddfe1ee02c", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6290 + }, + { + "path": "src/openfecli/parameters/molecules.py", + "sha256": "312e660f282cc86aa95ed8e8f0e95f0907db4cfaab8a3bcbc91056f0ca700127", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 1, + "row": 6502 + }, + { + "path": "src/openfecli/parameters/output.py", + "sha256": "d50bafd019bec262304aae87514dee99a2d4b6416d4dc9c387c01d997e8e5f83", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5301 + }, + { + "path": "src/openfecli/parameters/output_dir.py", + "sha256": "46074dc422c8957cba74c43b9f44ba2ba89e369270738117eeeb6e54fef4dd9f", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5288 + }, + { + "path": "src/openfecli/parameters/plan_network_options.py", + "sha256": "961a444d0344dbefdacae18e6feecbe9415ba1be908a1b0bb11b9425f7287110", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 9, + "row": 10473 + }, + { + "path": "src/openfecli/parameters/protein.py", + "sha256": "320026d18eff736a995dfd7e8ed06cb748c9c9dd54bbcc6f8b82efb68fd35d28", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 7915 + }, + { + "path": "src/openfecli/parameters/utils.py", + "sha256": "f739844e4f7833ea28a08f3467c0c24f10e0372dfac7dce2841857c2b6185072", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 1, + "row": 5639 + }, + { + "path": "src/openfecli/plan_alchemical_networks_utils.py", + "sha256": "f8cd1a224b651ff64ad0dd1deab6f3105e379b7e706ea3510e07409985cbc723", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7316 + }, + { + "path": "src/openfecli/plugins.py", + "sha256": "84debd1bec0df4ef1b10d8448d48489b3fb86495e778622769278706036a3edb", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5364 + }, + { + "path": "src/openfecli/tests/clicktypes/test_hyphenchoice.py", + "sha256": "841a3e9c8b2ed6d59a4f16cedf28a5cfad007662aca04aed3250ec4a3fded746", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5465 + }, + { + "path": "src/openfecli/tests/commands/conftest.py", + "sha256": "ff64cf57f0bc5b9366f0357aef0e2051ca6f7675e9d5d07be7b18c635304e701", + "language": "Python", + "lines": 423, + "truncated": false, + "block": 1, + "row": 9712 + }, + { + "path": "src/openfecli/tests/commands/test_atommapping.py", + "sha256": "f27de7a50d42d79a2f8ec8606056ced3e9e29f4500fefc46c9c8e32928646f12", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 9, + "row": 9243 + }, + { + "path": "src/openfecli/tests/commands/test_charge_generation.py", + "sha256": "1ec7ca5fdb9481411b347e81e0c0c1a7de75bcfc31695320ff53244ced771505", + "language": "Python", + "lines": 263, + "truncated": false, + "block": 9, + "row": 10571 + }, + { + "path": "src/openfecli/tests/commands/test_gather.py", + "sha256": "bd9f6f56c1b11981d059ddb160267a3dcfedf2b0d70a8222eaef1f12e5873131", + "language": "Python", + "lines": 555, + "truncated": false, + "block": 9, + "row": 11940 + }, + { + "path": "src/openfecli/tests/commands/test_ligand_network_viewer.py", + "sha256": "0bf5be618a2bb9bfd23373568a87705b6e78bc4951be9eab57e18ff7214fd8fd", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 1, + "row": 5582 + }, + { + "path": "src/openfecli/tests/commands/test_plan_rbfe_network.py", + "sha256": "69d0089a0161de63864a79bbdc525ce7d075da83033443e2df6028f56eed9c78", + "language": "Python", + "lines": 495, + "truncated": false, + "block": 9, + "row": 11637 + }, + { + "path": "src/openfecli/tests/commands/test_plan_rhfe_network.py", + "sha256": "8f37a8fb27051dfdf41f74fd459a9ae778e94f32613f390e55a57d291005d858", + "language": "Python", + "lines": 266, + "truncated": false, + "block": 9, + "row": 10481 + }, + { + "path": "src/openfecli/tests/commands/test_quickrun.py", + "sha256": "e1cd2fc7a555364abae2431aad4979fd786c8a1213dd58fa4bf19c3707f1c2b5", + "language": "Python", + "lines": 194, + "truncated": false, + "block": 9, + "row": 10384 + }, + { + "path": "src/openfecli/tests/commands/test_test.py", + "sha256": "592fd4a1040adeb5516b6e49bccb5cfd41c6bc02ac7199c7ab786dd5ab191305", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 1, + "row": 5638 + }, + { + "path": "src/openfecli/tests/conftest.py", + "sha256": "81f2918d2321e9138f0f1f15bf475a1461c09c312c151fac2b5dbe58fde923f1", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5150 + }, + { + "path": "src/openfecli/tests/dev/write_transformation_json.py", + "sha256": "9b6b0af8bd11edd52093126a5071ab37207c3bddda5194dd7d4751d51af4fdd7", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 1, + "row": 6172 + }, + { + "path": "src/openfecli/tests/parameters/test_mapper.py", + "sha256": "6a1f59251cfd8bc0f677a908e250b20c909c9a0e24bc8771c7e56fc858b2982f", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 1, + "row": 5394 + }, + { + "path": "src/openfecli/tests/parameters/test_mol.py", + "sha256": "dfbb61196c155e3a1099d30d0b37a764b7065116be673e1b930a95641423e261", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 5814 + }, + { + "path": "src/openfecli/tests/parameters/test_molecules.py", + "sha256": "49f6ed1b5933aeb68034f64456e862dead0b34d7350a1070b6dc90ffc19ff674", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 6105 + }, + { + "path": "src/openfecli/tests/parameters/test_output.py", + "sha256": "c39801db9ce8c49fb21a39738794f42303fc0a971f6649739b21f94d8ccc4fcb", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6616 + }, + { + "path": "src/openfecli/tests/parameters/test_output_dir.py", + "sha256": "741021efa7fe75b86e27b9ff59c3027e1e70a744400bf9776bcd5a5c329d39b1", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5257 + }, + { + "path": "src/openfecli/tests/parameters/test_plan_network_options.py", + "sha256": "c903535a916b9859ae66b50db21117d73d0276d978653906e96d078c12ca2148", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 1, + "row": 6378 + }, + { + "path": "src/openfecli/tests/parameters/test_protein.py", + "sha256": "bab4407c9e4e8952544d0e24fc2e0b294f06aed0e68502d59a6e7086aa6e8527", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 8250 + }, + { + "path": "src/openfecli/tests/parameters/test_utils.py", + "sha256": "1b6adfb681d7494bbb630bdbb244a970ee2afd7a5d6210ee52bc1249a2f1fb9a", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5370 + }, + { + "path": "src/openfecli/tests/test_cli.py", + "sha256": "382211af0a1e95727b3ced854156129ef04ead09f6a2936e746eb735497e0445", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 1, + "row": 6832 + }, + { + "path": "src/openfecli/tests/test_fetchables.py", + "sha256": "e36b5342549901af664e6f0a61edeb9aa26be47bfb101ff742c701c599a51166", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5778 + }, + { + "path": "src/openfecli/tests/test_fetching.py", + "sha256": "0f75af0f0fe066cb86d882012148caebca31c718796c462f09cd8cb80f989c7a", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 1, + "row": 6556 + }, + { + "path": "src/openfecli/tests/test_plugins.py", + "sha256": "eb79004e958479667db87511a129055729984a074fe711136ad3fa6706022c99", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5536 + }, + { + "path": "src/openfecli/tests/test_rbfe_tutorial.py", + "sha256": "8b1c7a69f3460d9577a7108eb28bb8a4cc0846c89ca9a156ac8229cc9150a662", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 9, + "row": 10131 + }, + { + "path": "src/openfecli/tests/test_utils.py", + "sha256": "85bdc6f3dee589f2697fbbe855410841e50b1225bad1fac6194a3dfd78295da3", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 1, + "row": 6710 + }, + { + "path": "src/openfecli/tests/utils.py", + "sha256": "dd2646bb8c0ba13688365c3d1cdc4d4216523484d85a318810f5add2332aaf13", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5399 + }, + { + "path": "src/openfecli/utils.py", + "sha256": "54c8e6a7d148d31940ff081e5ee04aee2ea3cc4002477db13d49aa216dfdd5fc", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 1, + "row": 6917 + } + ] +} \ No newline at end of file diff --git a/manifests/6f/github.com__diedrichsenlab__hierarchbayesparcel.json b/manifests/6f/github.com__diedrichsenlab__hierarchbayesparcel.json new file mode 100644 index 0000000000000000000000000000000000000000..cc4437771ee2b35267ef9a0f64fd2ba355fef06b --- /dev/null +++ b/manifests/6f/github.com__diedrichsenlab__hierarchbayesparcel.json @@ -0,0 +1,282 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/diedrichsenlab/hierarchbayesparcel", + "url": "https://github.com/DiedrichsenLab/HierarchBayesParcel", + "host": "github.com", + "commit": "d6060db0c9821ac9097cbfeb6949ec1716d8bf30", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "HierarchBayesParcel/__init__.py", + "sha256": "55a210444cc93dd5c049fd0e1cac35a46a2b342342c8b7024ade5b9547f4cf24", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6383 + }, + { + "path": "HierarchBayesParcel/arrangements.py", + "sha256": "3b4dd8ab48a234e5ff285af8ccfe20914a0766a71afd6b1d19553e41eca99abd", + "language": "Python", + "lines": 1935, + "truncated": false, + "block": 9, + "row": 12589 + }, + { + "path": "HierarchBayesParcel/emissions.py", + "sha256": "0704f5ad26d9a0792f481500a5948b1ae885e61703ecca5568e2208f07f7715c", + "language": "Python", + "lines": 743, + "truncated": false, + "block": 9, + "row": 12228 + }, + { + "path": "HierarchBayesParcel/evaluation.py", + "sha256": "c0139d341323acf60395604a3993d32aec7787988e5170c13b9ed5fbd01c0d6d", + "language": "Python", + "lines": 1011, + "truncated": false, + "block": 9, + "row": 12366 + }, + { + "path": "HierarchBayesParcel/full_model.py", + "sha256": "c55b9b524ed6075a665f00108c3bdec9bc0eb6ef047e11dd445e4c3fc60b6f5c", + "language": "Python", + "lines": 869, + "truncated": false, + "block": 9, + "row": 12363 + }, + { + "path": "HierarchBayesParcel/model.py", + "sha256": "67eeec9721c1e1db55739a5627f57e4a21ca79ba156301e2915c57a8c8cd4d02", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 9, + "row": 9834 + }, + { + "path": "HierarchBayesParcel/spatial.py", + "sha256": "18ff129602d2d9040c1d1637234576dc6cd224e8b5701270414045172335f09a", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 9, + "row": 10264 + }, + { + "path": "HierarchBayesParcel/util.py", + "sha256": "696e1722f8cc0a568cb9d19dc7deefc9b62e7f55b44270ab6cc65316a514efae", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 9, + "row": 9155 + }, + { + "path": "LICENSE", + "sha256": "8f9f6208950895057a8a8d4611a4b1cb89f5de1e9629e312c20bc22ce3e2e112", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2816 + }, + { + "path": "README.md", + "sha256": "72bd73c480ca3ae1957676153fee340ad1ea219ca83248ef67a6650829f692a4", + "language": "Text", + "lines": 70, + "truncated": false, + "block": 9, + "row": 14592 + }, + { + "path": "depreciated/AIS_test.py", + "sha256": "d203f7b49720ed63ceb0ca2408d5ded1adc3efe48fd65d223ab7d4b78c55d707", + "language": "Python", + "lines": 214, + "truncated": false, + "block": 9, + "row": 10362 + }, + { + "path": "depreciated/EM_clustering.py", + "sha256": "f9d7f555a64f645eaf80314e5194891195b1934bef057394bc4c184b3c40065a", + "language": "Python", + "lines": 261, + "truncated": false, + "block": 9, + "row": 10739 + }, + { + "path": "depreciated/arrangements_old.py", + "sha256": "6a70c3f54ca2a68c0de07ec1215e9f1cc4098ea93959a99d250e5054054f8169", + "language": "Python", + "lines": 680, + "truncated": false, + "block": 9, + "row": 12170 + }, + { + "path": "depreciated/bin_sparse_coding.py", + "sha256": "d92e82c5443d7755dc3eaf1c6ccac8fd152e15be88050939add790256d4c8f36", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7445 + }, + { + "path": "depreciated/closed_form.py", + "sha256": "c5eae4e05768a6d3bd1fc0a74152b4e16770eafae78d17b084955d6cfda6ae86", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 9, + "row": 9744 + }, + { + "path": "depreciated/data_estimation.py", + "sha256": "342ed57712e3e97ce090926b8eef52416df207dd472ce53c3575ed791a0afc4b", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 9, + "row": 9444 + }, + { + "path": "depreciated/dict_learn.py", + "sha256": "0650da35cd8db94f1fcb8e19390fe9d74eea59cd765b8978154f7988ac482cbd", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 9, + "row": 9271 + }, + { + "path": "depreciated/emission_models_develop.py", + "sha256": "5aade7f4b0c2c3a76bb4ebc83fa933c23be96ea9c96f4a53c0679da0e4236d58", + "language": "Python", + "lines": 892, + "truncated": false, + "block": 9, + "row": 12417 + }, + { + "path": "depreciated/examples.py", + "sha256": "2b3b1d8f933ab6c46aa24cdea75784fd6ff84f71be599a07c022377ee119a579", + "language": "Python", + "lines": 636, + "truncated": false, + "block": 9, + "row": 11983 + }, + { + "path": "depreciated/full_model_old.py", + "sha256": "99e09e265912208c46cfd5a8dbec239c7e48396dfafd31e8612f90d0a2fae9c8", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7695 + }, + { + "path": "depreciated/full_model_symmetric.py", + "sha256": "c5c57684a03ccf7aa38887fd27ec212bdab92ff8f342025f34d39126f02f2846", + "language": "Python", + "lines": 347, + "truncated": false, + "block": 9, + "row": 11355 + }, + { + "path": "depreciated/hopfield_network.py", + "sha256": "515622bb7bde2be2818ab47e475c7d792d512364fd972f804feea4166869f62e", + "language": "Python", + "lines": 279, + "truncated": false, + "block": 9, + "row": 10914 + }, + { + "path": "depreciated/mdtb_neocortical.py", + "sha256": "aee31281941b9f277ce1439f8782aa152f67b805745fc0f03d10f87f410e2b65", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7448 + }, + { + "path": "depreciated/rbm.py", + "sha256": "4fb2e0b44b1346ef0897a55afd5dd58f553d298fa4b6408672b1f6812e176bd7", + "language": "Python", + "lines": 490, + "truncated": false, + "block": 9, + "row": 11673 + }, + { + "path": "depreciated/sample_vmf.py", + "sha256": "b82aeee5a479246663e6cb4d361fe84fb2f0e3d8a3e45c2e2d40b608f9f0902d", + "language": "Python", + "lines": 242, + "truncated": false, + "block": 9, + "row": 10468 + }, + { + "path": "depreciated/simulate.py", + "sha256": "72f782dd962cd027840af9643e308f29b6dbc4d3bf072eb64c7805eb206ee73e", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7090 + }, + { + "path": "depreciated/test_plots.ipynb", + "sha256": "0ead70ab1e789562ba0d3626824714bd4d7891c2a8f5ff5fa3283c79e002f4f7", + "language": "Jupyter", + "lines": 18, + "truncated": false, + "block": 9, + "row": 2181 + }, + { + "path": "depreciated/test_plots.py", + "sha256": "e057ea7917cd60f5dc1c936351b0aab8a32774170560610efe415a651a195fa1", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6596 + }, + { + "path": "depreciated/test_surfplot.ipynb", + "sha256": "adf182267579e93552131de89a245c9be1eb00dfbabac36cd2b232e721a03995", + "language": "Jupyter", + "lines": 43, + "truncated": false, + "block": 9, + "row": 2200 + }, + { + "path": "depreciated/visualize_maps.ipynb", + "sha256": "b042d11a8e78aab5f37d2338703a58a2f9520e0ba8e9e76be4d5a320d599e73e", + "language": "Jupyter", + "lines": 94, + "truncated": false, + "block": 9, + "row": 2251 + } + ] +} \ No newline at end of file diff --git a/manifests/6f/zenodo__5676163.json b/manifests/6f/zenodo__5676163.json new file mode 100644 index 0000000000000000000000000000000000000000..04f1d617784e272011db6359017345dd5ff8e20d --- /dev/null +++ b/manifests/6f/zenodo__5676163.json @@ -0,0 +1,2478 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:5676163", + "url": "10.5281/zenodo.5676163", + "host": "zenodo.org", + "commit": "", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE.md", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.md", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "Main/AlignAcrossSessions.m", + "sha256": "e91532ba5f01d81a4031de8e8431cf23846ac2db32c33373cbc6a9a26625cd53", + "language": "MATLAB", + "lines": 135, + "truncated": false, + "block": 9, + "row": 5162 + }, + { + "path": "Main/CalcFoopsiThresh.m", + "sha256": "d46a5d37b9f9484069d6ba8146e5c2434b40624923432c351578106c5c83abc8", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3906 + }, + { + "path": "Main/ConcatVideos.m", + "sha256": "de9d23a441432c3df97cad1da4d0a44672e890bb7be2364625454ee1a873ae03", + "language": "MATLAB", + "lines": 99, + "truncated": false, + "block": 9, + "row": 4552 + }, + { + "path": "Main/ManualAlignSessions.m", + "sha256": "eceeda990c2a05e39cecf536ddfda4c209fd13d9a0dc2798e1f2475795056790", + "language": "MATLAB", + "lines": 115, + "truncated": false, + "block": 9, + "row": 4631 + }, + { + "path": "Main/NormConcatVideo.m", + "sha256": "b0eec67e322d0722842a9e63f6337e6f2fe2edebe4b705a96f481dfbc8a4493e", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 3995 + }, + { + "path": "Main/checkMotionCorrection.m", + "sha256": "139b15026b1efcc274bbe783fcc2bc5f8ff3ac3f77efff76c88b124cf3e72222", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 9, + "row": 4618 + }, + { + "path": "Main/convolve1D.m", + "sha256": "cd77e8e4d1f9fbe7a1906b84ba48c062097290995cf787d4f61b19ff88ee689b", + "language": "MATLAB", + "lines": 152, + "truncated": false, + "block": 9, + "row": 4971 + }, + { + "path": "Main/deconvConcat.m", + "sha256": "6822ee6d7e79e1bb0e199930d3b1a044f82731aa032d9f81b628d7cf2f571abe", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 9, + "row": 4223 + }, + { + "path": "Main/excludeBadAlign.m", + "sha256": "af28811b02f7d0e00b92f0e5d66de4fa41e2265c83b382962f85cdacd3b85c7a", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 9, + "row": 3971 + }, + { + "path": "Main/getActivity.m", + "sha256": "9b24a76364d0bf1dff3801d4eeedc65b0595abc695948b16d22d5a346afe377b", + "language": "MATLAB", + "lines": 86, + "truncated": false, + "block": 9, + "row": 4592 + }, + { + "path": "Main/joinActivity.m", + "sha256": "c9d665b517fa1652c34dd068c0cd3475ceff741be795da65a481531c7fbf57b4", + "language": "MATLAB", + "lines": 106, + "truncated": false, + "block": 9, + "row": 4700 + }, + { + "path": "Main/msGenerateVideoObjConcat.m", + "sha256": "650b764747f82dda9f0cd565d2a94811187a6c75814321e9bba269aca74be51b", + "language": "MATLAB", + "lines": 185, + "truncated": false, + "block": 9, + "row": 5390 + }, + { + "path": "Main/msNormCorreConcat.m", + "sha256": "876bfc1654d9611fdc07d5c7ed3a64a4c44eadd8cf0b53902baac77214860717", + "language": "MATLAB", + "lines": 148, + "truncated": false, + "block": 9, + "row": 5089 + }, + { + "path": "Main/msRunCNMFE_Concat.m", + "sha256": "ccf0a1f30b16ac3b13dd9b5f8de27ca6b848b2c07aa9aaf2b379bc38562ee8ab", + "language": "MATLAB", + "lines": 256, + "truncated": false, + "block": 9, + "row": 5551 + }, + { + "path": "Main/read_file.m", + "sha256": "cc50ca80231709c6e88c450530ceda89f94a46a847fc3cac12f7a60d033f26b3", + "language": "MATLAB", + "lines": 99, + "truncated": false, + "block": 9, + "row": 4767 + }, + { + "path": "Main/selectROI.m", + "sha256": "bd56866831aaade2e2ae6dbb830b931e3e5545dfa589ffa389ca944941a56f01", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 9, + "row": 4282 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@MotionCorrection/MotionCorrection.m", + "sha256": "6e217a0f2e01be0bc4474aa54d6efd54dbc1d0223c92ba9b168cfe14d930b7c6", + "language": "MATLAB", + "lines": 209, + "truncated": false, + "block": 3, + "row": 16186 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/MergeNeighbors.m", + "sha256": "d4bd299d1e4ab12f47b59a3eba2878e0f66aa00c81d98e44ef7b90e84a3dcfa1", + "language": "MATLAB", + "lines": 115, + "truncated": false, + "block": 6, + "row": 13378 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/Sources2D.m", + "sha256": "7b8d1c95e7a8c7b62fa09b7445302f61f86a0980af0c471ca96041815c3a736c", + "language": "MATLAB", + "lines": 2145, + "truncated": false, + "block": 9, + "row": 6012 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/correlation_pnr_parallel.m", + "sha256": "d4412888002a6f51d8d886e8b46f80879c881fa2cac3785fadb649719be669e0", + "language": "MATLAB", + "lines": 128, + "truncated": false, + "block": 6, + "row": 13367 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/deconvTemporal.m", + "sha256": "e1e583171e58ed412105cf0cd0a09f546534a8ec139296cada2934a782654d36", + "language": "MATLAB", + "lines": 106, + "truncated": false, + "block": 6, + "row": 12339 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/decorrTemporal.m", + "sha256": "dff003c4b16c35ec235e7ee2997e8840c7d11cca9a9627a795d27a91caa85e6a", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 6, + "row": 7842 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/displayNeurons.m", + "sha256": "e8330a970ee011a1a652c9314cbd814659d81e85757383b1359974c5e6596388", + "language": "MATLAB", + "lines": 163, + "truncated": false, + "block": 6, + "row": 15024 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/downSample.m", + "sha256": "fa0c0469a91e09ee9cb8bd594222cb775113b84953cc3720066d38c15091d685", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 6, + "row": 5647 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/initComponents_2p.m", + "sha256": "039cfa19c1d9772a23ed59c8aedf2e57fd391567b93666c9a94c64180b8b4076", + "language": "MATLAB", + "lines": 292, + "truncated": false, + "block": 6, + "row": 17707 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/initComponents_batch.m", + "sha256": "0436678fdeee0f4ce1ef1672de1354e46c74fe8da826e06f4000888f58364c76", + "language": "MATLAB", + "lines": 113, + "truncated": false, + "block": 6, + "row": 13104 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/initComponents_corr.m", + "sha256": "198cae2d242d3eb96cbbb8a668b39be999c5340239c37b33387029e5bf39c755", + "language": "MATLAB", + "lines": 200, + "truncated": false, + "block": 6, + "row": 16633 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/initComponents_endoscope.m", + "sha256": "9e5fa019dc50424c1466a4c7abc9af0c5b513d524c100ae6c059a9b6f19eefea", + "language": "MATLAB", + "lines": 204, + "truncated": false, + "block": 6, + "row": 16695 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/initComponents_parallel.m", + "sha256": "9b1b835fa1dc4e2aeb8fa6ee1a8efff821e9da7eaff7539a0b6326fd0e2e5693", + "language": "MATLAB", + "lines": 499, + "truncated": false, + "block": 9, + "row": 5771 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/initComponents_residual_parallel.m", + "sha256": "729f09bd8fda41c3d3cf0596b0397c0299adc621ebd979ab0f10ce50ef7b315c", + "language": "MATLAB", + "lines": 432, + "truncated": false, + "block": 6, + "row": 18484 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/initTemporal.m", + "sha256": "f904732aa6151f82bd3e52e04c10457fdafe196c1935cb5901abbeb76eef15b3", + "language": "MATLAB", + "lines": 303, + "truncated": false, + "block": 6, + "row": 17788 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/manual_merge_multi_pairs.m", + "sha256": "fa4ac37b94dd17940ecc422efd3ce34d0325d7fb21175cbd1f7decb402252d73", + "language": "MATLAB", + "lines": 215, + "truncated": false, + "block": 6, + "row": 16463 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/merge_close_neighbors.m", + "sha256": "46e6d78e0fcddc55ea2985b31fb17736755506d8325d74a1ae746a2efa77fd51", + "language": "MATLAB", + "lines": 235, + "truncated": false, + "block": 9, + "row": 5409 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/merge_high_corr.m", + "sha256": "6ee33c1e9750e9961e3530c6800c180e5eae3fc7d4dedce63a5b32af57520056", + "language": "MATLAB", + "lines": 239, + "truncated": false, + "block": 6, + "row": 16837 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/merge_neurons_dist_corr.m", + "sha256": "dedc49019f0a7183fa70eccc3a84ff61366f77b1e431e063b6a207d0e92ddcfe", + "language": "MATLAB", + "lines": 246, + "truncated": false, + "block": 6, + "row": 16961 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/post_process_spatial.m", + "sha256": "edbeb635f4b176e3db29f36317905d824883c4c9becfc8be781da68865e72d75", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 6, + "row": 5780 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/quickMerge.m", + "sha256": "c698b155dbe8d224160e42d41f5ed85cba110a41abba526c7293cb2fa75d86b8", + "language": "MATLAB", + "lines": 127, + "truncated": false, + "block": 6, + "row": 13738 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/set_parameters.m", + "sha256": "a1ea2635eb9a111e79c0e236c9afc2740e5df705df89a19c9a467327cf5f1f8d", + "language": "MATLAB", + "lines": 183, + "truncated": false, + "block": 6, + "row": 16536 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/show_demixed_video.m", + "sha256": "ed8858b59eb2bd8ca73e89d88fd7389c7a488e4800277ef7f75e305a127741f3", + "language": "MATLAB", + "lines": 171, + "truncated": false, + "block": 9, + "row": 5074 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/upSample.m", + "sha256": "8b7e52329ef49e5cb924347d75413d481887a50a10a760cb4dde8396c8a3cc38", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 6, + "row": 6056 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/updateBG.m", + "sha256": "b3460e5ac433db66351ed89aa16449f9603f3b7b9cefee2dbfbc679032e5022e", + "language": "MATLAB", + "lines": 114, + "truncated": false, + "block": 6, + "row": 12391 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/updateSpatial_endoscope.m", + "sha256": "d7e940ab14767f6830a863e4a1c39a3298386defced6f62ffdc7fcf6a0037012", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 6, + "row": 10213 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/updateTemporal_endoscope.m", + "sha256": "44356193ed4176c4692476b8ef68c4710955ee1fe26d8e50cd5bedebc9f9bbe4", + "language": "MATLAB", + "lines": 95, + "truncated": false, + "block": 6, + "row": 11614 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/update_background_batch.m", + "sha256": "1bf08ac6930901ae0ff7195b14cca1a4dda2bfd5b7912565f8207c26637d2b52", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 6, + "row": 5331 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/update_background_parallel.m", + "sha256": "2f9dc6131b896fbafd38527f2eef73e4ead7270ef30c5351750a414913acae3d", + "language": "MATLAB", + "lines": 334, + "truncated": false, + "block": 6, + "row": 18121 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/update_spatial_batch.m", + "sha256": "2234edf31000ffa291f6a9633c6b556be8e91287e086c2c3c56bad1f1be96e31", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 6, + "row": 7846 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/update_spatial_parallel.m", + "sha256": "2590a15aec19a8b99625ea5e7160e5505c2759a4d09819803b4c7a8852d13c2d", + "language": "MATLAB", + "lines": 366, + "truncated": false, + "block": 6, + "row": 18205 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/update_temporal_batch.m", + "sha256": "c2b871befb000fa745c19bec27c300e12ce666ea001e60416bc3a3577a108477", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 6, + "row": 6502 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/update_temporal_parallel.m", + "sha256": "ccd2d8081d48d6cf6eb1f49a279737b2512552fe3adb4af1dab21110bf935af0", + "language": "MATLAB", + "lines": 352, + "truncated": false, + "block": 9, + "row": 5606 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/@Sources2D/viewNeurons.m", + "sha256": "a190e177dfc4f6a2a3c47f254c4dfec14d2a45d8ca7f6569b3951f317d7c8ce3", + "language": "MATLAB", + "lines": 208, + "truncated": false, + "block": 6, + "row": 16020 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/CNMFSetParms.m", + "sha256": "de64f9601320f3731da4f11635d6b8ecdc7f0a4854926c63ace54e6460e23fb7", + "language": "MATLAB", + "lines": 315, + "truncated": false, + "block": 6, + "row": 17994 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/GetSn.m", + "sha256": "470331d5077c5cfbf43cb8bbb88124c8dddb71dd2a4cf2c246d95da3b422d326", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 6, + "row": 8276 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/GetSn_hist.m", + "sha256": "a0ddaa992cc765b989abf629dbf127497fc6415d36be195ba9cdbc2e1d649722", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 6, + "row": 5589 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/HALS.m", + "sha256": "9d60a91830189dd9622c3d0cfe21fe19b251d0b604d3b66e58cd747537b7a8ee", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 6, + "row": 10136 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/HALS_2d.m", + "sha256": "5c03ff3cf455ed56c6b7fc07a82c22bc1eb1e131e29e465c061c284b7da66564", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 6, + "row": 10462 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/HALS_spatial.m", + "sha256": "fb35a727dec159ab84e722dff691f8bea4aaa82bb57f3c03b7c127ba346896ca", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 6, + "row": 7895 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/HALS_spatial_thresh.m", + "sha256": "c5517996079776ba1d788b4c06abbe72d2f5ab2f422040871beebb450d79099b", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 6, + "row": 8799 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/HALS_spatial_threshold.m", + "sha256": "f612bda2047ee5d284d767ba06c0535d5607d01ce979f73bede9c784d2b2fc8e", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 6, + "row": 8037 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/HALS_temporal.m", + "sha256": "cee37767b2b83bef6b22851511a2ee8a9474c1e3c634fe28a6a92b997b8feb29", + "language": "MATLAB", + "lines": 119, + "truncated": false, + "block": 9, + "row": 4885 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/HMC_exact2.m", + "sha256": "9feed4169dffbae86adbcc3441d61645bff8fd554ce1bd16640c36d1e6c661e4", + "language": "MATLAB", + "lines": 229, + "truncated": false, + "block": 6, + "row": 15110 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/MCEM_foopsi.m", + "sha256": "b53f75742284541b26db24dfd54e5b1e38f5d4331acd11689b60bc0010c1e9e8", + "language": "MATLAB", + "lines": 135, + "truncated": false, + "block": 6, + "row": 14535 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/NoRMCorreSetParms.m", + "sha256": "e02a13d9157838955c0cbd3065f23082b844614432af2b13c5969cd3cf5bb431", + "language": "MATLAB", + "lines": 233, + "truncated": false, + "block": 9, + "row": 5569 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/addSpike.m", + "sha256": "5a4a43a1758049d83d0e9b08744a9c9589183e87691924eb42aad5a910787e5c", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 6, + "row": 12098 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/apply_shifts.m", + "sha256": "0fec66f04c2720c7854af4736fd4029bec446e08eed00355b0adf0f21c4a1998", + "language": "MATLAB", + "lines": 292, + "truncated": false, + "block": 9, + "row": 5633 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/ar2exp.m", + "sha256": "4660fbe8d28af2479c185f667b2a11649cde19cf904c78465105d2dadb369ded", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 6, + "row": 2958 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/bigread2.m", + "sha256": "4e6196f952eb2a0ab01529f297981906de09c006ebd5417ac99b8a77f749a1da", + "language": "MATLAB", + "lines": 173, + "truncated": false, + "block": 3, + "row": 15183 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/bsplineM.m", + "sha256": "f22c7d8eee930ee0460b68702fbd55501aa5cc197d21c9e7f2159fd959001aee", + "language": "MATLAB", + "lines": 187, + "truncated": false, + "block": 6, + "row": 14852 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cell2mat_ov.m", + "sha256": "538c5b9cbfa3b97ad8cf4f3755a997f47df2b252d8e044bc8cdb7e1e97e4d7e3", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 3, + "row": 10418 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cell2mat_ov_sum.m", + "sha256": "86422bed0a29f326f5865717ded01f10795c8e1c89051757c1222b0b9ab50bce", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 3, + "row": 12496 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/choose_lambda.m", + "sha256": "532358b585f41ab674e1cee6069c50d9ced68327ccbce42a8c16562b7ff9156c", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 6, + "row": 7694 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/choose_smin.m", + "sha256": "f21741e8dbab5ff438ebd7ca6989ab43e6b285df5767f13d3a838ccff7786601", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 6, + "row": 8155 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/circular_constraints.m", + "sha256": "99c38f6a822730d17f50ad0eea920950888055ede6b21e877f500cf1ec510771", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 6, + "row": 8035 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/classify_components.m", + "sha256": "bdc8a4f5a38b9530808f7a1ae3fd06c12e4675fb9d010db57b7958bb3a029117", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 6, + "row": 6666 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cnmfe_choose_data.m", + "sha256": "24ba984b6c3d59b51e8a89a67e6a66b40ba64691f16c51642d7044388bfa9f06", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 6, + "row": 10888 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cnmfe_demix_video.m", + "sha256": "ab49bca3af07c8cc556e75424a78933c3fd3898d8d0097c147fb0ab9f9ebcb0c", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 6, + "row": 10965 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cnmfe_full.m", + "sha256": "1ad32ea42b2d49940bb103ca7e37a10a38efc25b56df466f9782a93788a41763", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 6, + "row": 8386 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cnmfe_load_data.m", + "sha256": "ca328f48f0565f18e887a629ac4438bfcb4de8160059c373d50c2ab4d3d34daf", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 6, + "row": 6574 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cnmfe_manual_merge.m", + "sha256": "fae2e25dc8a0b533b30fab9ea6a2df3e1352210a8ba324728f027cf0e422dd16", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 6, + "row": 11649 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cnmfe_manual_merge_cancel.m", + "sha256": "5865274022c21b7fdfab0aed3dd46e3004559d6b3219f488d5467d73a67c3fbf", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 6, + "row": 2953 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cnmfe_manual_merge_merge_neurons.m", + "sha256": "11769c78edf09e3ee40593db5b9dc7fd88b4dadb52658733425dbe8e913e166f", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 6, + "row": 5632 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cnmfe_manual_merge_pick_neuron.m", + "sha256": "4ec781b387551815f4127720d37818c35ebd9282555216c06277d3585d943148", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 6, + "row": 9263 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cnmfe_manual_merge_remove_neuron.m", + "sha256": "634a9f728d7c1a21986946c248a55ffd07f673568ee76296078a92fb7c9cb022", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 6, + "row": 8666 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cnmfe_merge_neighbors.m", + "sha256": "891c498c0567766740baa7e8e27dfc1e6ba9fc5a3d88fdebc9c52f9d51ac93f7", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 6, + "row": 10359 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cnmfe_quick_merge.m", + "sha256": "a167cbc62be84b8a3af15f0e2ffb4949205c85ec1d2bd4ab89af11c89aa446c8", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 6, + "row": 10485 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cnmfe_save_video.m", + "sha256": "24272629b1b7e7cf235e183f50c2aa1611399e5f513dd6bdf4394903d253c7c3", + "language": "MATLAB", + "lines": 119, + "truncated": false, + "block": 6, + "row": 13280 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cnmfe_setup.m", + "sha256": "226f1d0cff6f19c894db59847e92946e5c0dc9fdaa9f366fa220f86ca5944644", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3762 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cnmfe_show_corr_pnr.m", + "sha256": "0efc5c782c2b9f70c00d92609f89677ec9f66dccf3ed39923dc97c8c02c4741c", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 6, + "row": 4395 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cnmfe_svd_BG.m", + "sha256": "8c8b3de0b55b8affc7d6145683f4b1516c516a4d4aa389d16f3ec223fcc7e2fe", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 6, + "row": 2583 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cnmfe_update_BG.m", + "sha256": "764da7c7f0ff6cd7f7d698dae9618b10b19f1bb3ab44b1d67c51d082e07835ac", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 6, + "row": 5339 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/com.m", + "sha256": "14286f83b438a8c29f9f330b9e23c895dc0e747246281f0730fe43cbcf32ee12", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 6, + "row": 4814 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/compress_weights.m", + "sha256": "129979dc4ccd712b40a270e92f21778b7bd503a4f7d98aea294c23e509a5512f", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 6, + "row": 4336 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/concatenate_files.m", + "sha256": "0d2e45b18a148712c153b86f5db863c33969d73e74ef9ee6fa44b5b870d3bce7", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 3, + "row": 11750 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/connectivity_constraint.m", + "sha256": "94c07513851aaea59bbff1068ff44911b725196b661860c925ae7cbb08ada717", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 6, + "row": 4106 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/constrained_foopsi.m", + "sha256": "8ef3211f802f95269697c1eaa56d8f0eef375c8af1278b895d8bf2200e5b2bb3", + "language": "MATLAB", + "lines": 298, + "truncated": false, + "block": 6, + "row": 17926 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/constrained_foopsi_cvx.m", + "sha256": "bf09a8eeb3d5e50df5e31e9fd6af42bc5f605186b3c51c0c1c4e51b53538cc93", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 6, + "row": 9692 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/constrained_oasisAR1.m", + "sha256": "a8f7dd9e839acd674cfb7bd1a6f9ae3ad44f2418467727e4522ca3c9b4e73876", + "language": "MATLAB", + "lines": 250, + "truncated": false, + "block": 6, + "row": 16729 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/constrained_oasisAR2.m", + "sha256": "5cd0cf837a7ecf104eeaf6a931805efc6d4f62bc1b80d565e14c4eb84ace58d8", + "language": "MATLAB", + "lines": 252, + "truncated": false, + "block": 6, + "row": 16755 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/construct_grid.m", + "sha256": "762f94c078f64f111b92a5686e0c4153c0a4509bb2bf064046db4496269b81b1", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 3, + "row": 10216 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/construct_grid_even.m", + "sha256": "b912d004e981a769c00921c3a271188143d39e94d70bb416d641ab04485c2c22", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 3, + "row": 9716 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/construct_patches.m", + "sha256": "71482e19124e6bb4d2648f8193118de1762324b6596df401cb1eb2029a92c9e3", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 6, + "row": 9822 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/construct_weights.m", + "sha256": "187dedc1733e64e1e8de917b6994e2e220ed5ac2688f404fe9f812af9e45a10a", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 3, + "row": 9656 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cont_ca_sampler.m", + "sha256": "d5ad385d23e531abe0cd3ff76f65cfcd14f0cee89113fca582c9dfd3cda581f6", + "language": "MATLAB", + "lines": 420, + "truncated": false, + "block": 6, + "row": 18493 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/correct_bidirectional_offset.m", + "sha256": "eb110b8b2f84c7b661d98b8bf3a22d3d93a180abe0cfbf510fc57636792647f2", + "language": "MATLAB", + "lines": 77, + "truncated": false, + "block": 3, + "row": 12417 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/correlation_image.m", + "sha256": "0d4a8362a7d9e3f5eb65fc4217c1cc68dfa009182f8cfa4ca0a4d38345a170ed", + "language": "MATLAB", + "lines": 77, + "truncated": false, + "block": 6, + "row": 11296 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/correlation_image_endoscope.m", + "sha256": "39a1309c5cd1a3159f276a45408df36d186482e9e82770cebcd374863b2f2da2", + "language": "MATLAB", + "lines": 97, + "truncated": false, + "block": 6, + "row": 12734 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/create_kernel.m", + "sha256": "b1a2ba16a9de3edfb2fea8511f2cb84a7282f757fa1e45acd1f8a470020e04e8", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 6, + "row": 10922 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/cvx_foopsi.m", + "sha256": "6844ceaf63d585090a575885eb50e2ed298cc5e341950dd4b870f921810ed474", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 3848 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/deconvCa.m", + "sha256": "c3d792be74c98c07f1333c310fb20f56f69ea4d9d8d411a8f75a47a16ec5917f", + "language": "MATLAB", + "lines": 356, + "truncated": false, + "block": 3, + "row": 16370 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/deconv_temporal.m", + "sha256": "4462a53ccfc4348203c59d2b978ebc466bf6a4c046ede3e2a51b6960c7427a08", + "language": "MATLAB", + "lines": 89, + "truncated": false, + "block": 6, + "row": 12319 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/deconvolveCa.m", + "sha256": "796367a4682e7af6e052afe36732849c411a3428f24014ae3bb1ffb302a46dfb", + "language": "MATLAB", + "lines": 328, + "truncated": false, + "block": 9, + "row": 5645 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/demo.m", + "sha256": "12136d9bcfdf3581e0d50cd7e4c2b71dcf6cf4eb0da0d8debe9b3d567881aa8d", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 3, + "row": 14339 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/demo_1p.m", + "sha256": "7d6d0722c8a496f6348eaa1fac504d31f1e20dcdf7ab2aac96871cc7c2e46f86", + "language": "MATLAB", + "lines": 165, + "truncated": false, + "block": 9, + "row": 5325 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/demo_1p_low_RAM.m", + "sha256": "9d1d8c5a45ccba02a21fcb1368173f743a82f96043538816e432e97723c6c72b", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 9, + "row": 4315 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/demo_mc_class.m", + "sha256": "ffbb5681c96b0ee35b50ad0a4b0e9d6d7b0b820ab09ca181eb08a19c8158a197", + "language": "MATLAB", + "lines": 86, + "truncated": false, + "block": 3, + "row": 14387 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/demo_memmap.m", + "sha256": "9f8fe687db381e078a7099357e54c45ca8f0193f6e8d0a5fa5738225212e757e", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 6, + "row": 11654 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/demo_script.m", + "sha256": "6dac3048ce92bb9a1719fe4601a008e7b25b71524d113251296a6706d3c99d95", + "language": "MATLAB", + "lines": 108, + "truncated": false, + "block": 6, + "row": 14439 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/demo_script_class.m", + "sha256": "4dd0ae0f6a7dbc62a2abc55130c686aecfd32294f71fb115d1e57d99b8fa8ce7", + "language": "MATLAB", + "lines": 105, + "truncated": false, + "block": 6, + "row": 14050 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/determine_search_location.m", + "sha256": "5bee235a90a047900559654a43f1683f5a2bb5c10adeceeb3f5df36fed26a636", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 9, + "row": 5001 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/detrend_data.m", + "sha256": "36bf1c6adab8848eb4b49c9cf660bf4c725ada5db2367eb2464b752d3103445f", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 6, + "row": 6809 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/dftregistration_min_max.m", + "sha256": "10c024244f93cbd6feb9feda6dc43e4986479e342d57f5f02c4a3992de9dfe4d", + "language": "MATLAB", + "lines": 283, + "truncated": false, + "block": 3, + "row": 16359 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/dftregistration_min_max_3d.m", + "sha256": "8fadfab20c7be5e19221550c435084a36a534124f99fea3445dd2a5dff70ff1b", + "language": "MATLAB", + "lines": 315, + "truncated": false, + "block": 3, + "row": 16514 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/distribute_data.m", + "sha256": "78cb123aa85fef4d310211fa3c5aded96251cd4ec51963d8ea8d88faa5017f00", + "language": "MATLAB", + "lines": 207, + "truncated": false, + "block": 9, + "row": 5353 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/downsample_data.m", + "sha256": "9469ff5140236b294ed95a87357182d43b5f9dadd9b180047bbf3e9391c85ba4", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 3, + "row": 12816 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/dsData.m", + "sha256": "f36b67312cbd7724de725981dc6305501721269a5f383893c4d178af46747451", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 6, + "row": 7466 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/dsKernel.m", + "sha256": "a4204ec0b2c6653a7263e8953192fa85ac883419abe52610cebdc8481ea88909", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 6, + "row": 8114 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/estimate_baseline_noise.m", + "sha256": "65da356ba899f6b99f6669ca4c994733bebcd07b3a2b97c1ca84bea95442a1ad", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 6, + "row": 6441 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/estimate_parameters.m", + "sha256": "59f93f744f314303cf476c8cfcf9c2dfbbfe7a50a34c80418197cd20064d7c8f", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 6, + "row": 8859 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/estimate_time_constant.m", + "sha256": "b1d12fbf81a9316dea0e7276a208304b15f9d5e02a220e1ccd818841d45d6d9a", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 6, + "row": 10235 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/exp2ar.m", + "sha256": "4501f2b21adcb47c42601e713aa9fe407502700f401ff2559b87fbc7b0748623", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 6, + "row": 2523 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/exp2kernel.m", + "sha256": "11484bec6079c52998bc9ec7f72d9cce2aa99fb9181b1e5c01f72ec175612229", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 6, + "row": 3893 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/extract_DF_F.m", + "sha256": "5cbf9693eb7eae805143b9f3a84815bdf2d2773ea089aca621d04808577d27cc", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 6, + "row": 11818 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/extract_ac.m", + "sha256": "a967a82d45d3f8980922eb64d23e8a849251626557309671494b74df1009937d", + "language": "MATLAB", + "lines": 107, + "truncated": false, + "block": 6, + "row": 13059 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/extract_ac_2p.m", + "sha256": "894d2288467cdd41f0c8a2ae491f5c7d621acdcc0add1c05749788e74fef9cd5", + "language": "MATLAB", + "lines": 98, + "truncated": false, + "block": 6, + "row": 12568 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/find_unsaturatedPixels.m", + "sha256": "5e3fb370d961142a92c39f23130c6286f35a65dc36bbe35996322dec18d5735a", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 6, + "row": 5704 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/fit_gauss1.m", + "sha256": "934beed1da04ca49dbff6c2dbdba16cc6af48f28a6654108eb7593f90bd8603f", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 6, + "row": 10260 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/fit_nmf_model.m", + "sha256": "cb6f4bf71574cdf1f9597f6bb022bec8dfe19430ae30ce8ffb4cf6c1b237d6ca", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 6, + "row": 4992 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/fit_ring_model.m", + "sha256": "5fdda65aee48f04f9823fa03a6e2bb64189305b600453b03bf492a0c09fbd46a", + "language": "MATLAB", + "lines": 129, + "truncated": false, + "block": 6, + "row": 13204 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/fit_svd_model.m", + "sha256": "3895050fa08b01700596ee9078311b160348bff0f0d3fff1142a937a86efab10", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3601 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/foopsi.m", + "sha256": "49078d72acea1508c66e8601b1099c37962f3fe256d9b8d3c828e41700f3f78a", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 6, + "row": 9272 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/foopsi_oasisAR1.m", + "sha256": "ae492a35ece2bb71a7d4e9d16463af5dcf60a3d26cd4a92dd2fdf4e094de2472", + "language": "MATLAB", + "lines": 172, + "truncated": false, + "block": 9, + "row": 5170 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/foopsi_oasisAR2.m", + "sha256": "5c53d3fd9a117a6491830cf2d69bf372a07da4e630f81bfac41560188b15a881", + "language": "MATLAB", + "lines": 191, + "truncated": false, + "block": 6, + "row": 15359 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/gen_data.m", + "sha256": "aa6fb8a8dfc46e87aa7576cd9a127000b493321ce4bcaab96de93482337b7928", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 6, + "row": 6227 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/gen_sinusoidal_data.m", + "sha256": "c3e95df071e036a068c5f21dc89e2881614258f52047d250d98a69471627a373", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 6, + "row": 6448 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/get_data_dimension.m", + "sha256": "00b5d21902e761f1a000236f4dbf125e7951125b0553bb8d94df81cf64472f80", + "language": "MATLAB", + "lines": 75, + "truncated": false, + "block": 9, + "row": 4299 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/get_date.m", + "sha256": "16624a5b33b536534b5f732765b5d84ab34f2e4da68f7329bcf855071013a739", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 6, + "row": 2287 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/get_fullname.m", + "sha256": "9e00dfb7b598b5d36bc39807e3468a4f436e73092cd354d1a772354e05e38fa5", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 6, + "row": 3130 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/get_initial_sample.m", + "sha256": "a3ba49d9df94e9071be7c3ec83c44120324bc38aa0d958a59a008fe5e59da043", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 6, + "row": 9719 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/get_minute.m", + "sha256": "90514e7dae986681f1d0c596f76c600b60aa1874a379491f75c1c24b10f51532", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 6, + "row": 2283 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/get_next_spikes.m", + "sha256": "368ce12559b3e4a9a88cfb8f5ff79e1b7bd029adbf768d4226e5f606cad3723e", + "language": "MATLAB", + "lines": 159, + "truncated": false, + "block": 6, + "row": 16005 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/get_nhood.m", + "sha256": "1ce95a2cd686165f77379ee05b92790452d4a0cff0f46a46e4d55c536019efd8", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 6, + "row": 5441 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/get_noise_fft.m", + "sha256": "ec439701592ca66dba25f273712bbe3d329f78ddb77810bcf98821e26afefe52", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 6, + "row": 11821 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/get_patch_data.m", + "sha256": "3b0be28c57da21b6edaf64593172f00453a8ffc7c41734203edc979496a8653d", + "language": "MATLAB", + "lines": 144, + "truncated": false, + "block": 6, + "row": 14126 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/graph_conn_comp_mex.cpp", + "sha256": "aea231596159761dd5a977d0c043034c104fc8911d4cffe00628f4f5a29e5079", + "language": "C++", + "lines": 116, + "truncated": false, + "block": 5, + "row": 2951 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/graph_connected_comp.m", + "sha256": "3581707f45cb7b45aa8a2fce8d6f33aaef1c9118bc812c694d72438240842309", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 6, + "row": 5073 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/greedyROI.m", + "sha256": "ef56fc4ae9dd8bcc6b08179a4a68052bca92dcf945f74e751b99c0022045da8a", + "language": "MATLAB", + "lines": 287, + "truncated": false, + "block": 6, + "row": 17879 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/greedyROI_corr.m", + "sha256": "f0b23120bb6246202d282b7562fd07f221f1988b683ab35bc4719b8dd8c71584", + "language": "MATLAB", + "lines": 237, + "truncated": false, + "block": 6, + "row": 17229 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/greedyROI_endoscope.m", + "sha256": "2b83c9fe72e5629ea8d5870152203f6dcfd10f15167e4b00dcc58ec4b2be5ce8", + "language": "MATLAB", + "lines": 498, + "truncated": false, + "block": 9, + "row": 5743 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/h5_2_bin.m", + "sha256": "abad9d03ca466f8dc3b835d0877a1eaacb1ae99b535ea172671c25efadcea391", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 3, + "row": 9414 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/han.m", + "sha256": "0103424a249e57b1b231b26865465192dee4143da5c6eab357f6b06847b0babe", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 3, + "row": 9707 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/hsvThreshold.m", + "sha256": "7cbfafce1c07478769bfa8aee15d9af1f45617b0afff5f3723a6a696b0a5a03f", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 9, + "row": 3330 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/init_fig.m", + "sha256": "984daf30a424a5d1184e7ddccdb4bb0af656792f9d104b3e25d06ceef9a0f9e7", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 6, + "row": 2713 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/initialize_components.m", + "sha256": "6d0fa774721f512c1c5604158639e3cf08009936fad194bf0336b9a47d8fdfdc", + "language": "MATLAB", + "lines": 129, + "truncated": false, + "block": 6, + "row": 15300 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/interp_missing_data.m", + "sha256": "ba1e14bdaf95f9b14fde2878cdd9fdbae5db74f1f4cfb12c1623f6a4d0a7f857", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 6, + "row": 5342 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/kde.m", + "sha256": "db9c4a12c559bc0d38eebf3ff7daca339598e75a8ae1c5db4f7d6e8e2b3f7795", + "language": "MATLAB", + "lines": 174, + "truncated": false, + "block": 9, + "row": 5342 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/kmeans_pp.m", + "sha256": "374b059448ba5087b53d9856c46f99c6848d05b526c5e2a5ec1c560f231a9eef", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 6, + "row": 11967 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/lagrangian_foopsi_temporal.m", + "sha256": "7936c5f58d9ea6aafd2dc3e6958e3d07e2987b08245d887cba6badf038e9dce4", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3665 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/lambda_rate.m", + "sha256": "f68c63a31918a1193bf4c9b7f0b8b45670adc03848f5c305fc2ba9cc9325d10c", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 6, + "row": 2874 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/lars_regression_noise.m", + "sha256": "76fb2c82d1cb0d9947f03d43259fb19d92f71b91b5aec08a82a81f2aadcfe441", + "language": "MATLAB", + "lines": 286, + "truncated": false, + "block": 6, + "row": 16468 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/lars_spatial.m", + "sha256": "d15179ca2b0284662b5bc1b480a9c589c386d9aa4f62c9cbfd50124a318c37d0", + "language": "MATLAB", + "lines": 151, + "truncated": false, + "block": 6, + "row": 13060 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/lle.m", + "sha256": "a004ca38eda303efc1d7891c6a6011e2fd80cfd29b65f4f6dace4be87b7d1e0e", + "language": "MATLAB", + "lines": 107, + "truncated": false, + "block": 6, + "row": 12525 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/loadtiff.m", + "sha256": "aa9696594616bb052d3a243f9694a7a6b071c85237738910eb02f22c055188c2", + "language": "MATLAB", + "lines": 154, + "truncated": false, + "block": 9, + "row": 5143 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/loadtiff_old.m", + "sha256": "a3c20f5f1fa8826952041b9fb6e703b24f8ebbd1d8477ab60c4d395519d5037d", + "language": "MATLAB", + "lines": 150, + "truncated": false, + "block": 3, + "row": 14899 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/local_background.m", + "sha256": "86cd37f6b6907205cd3275599e1cdc5aa3e16c9b91cd89693bf20fd6793208f7", + "language": "MATLAB", + "lines": 152, + "truncated": false, + "block": 6, + "row": 14515 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/make_G_matrix.m", + "sha256": "5f78dbb0f59ba76d833a1a1e45f9ad9e6f0cd2d27205a3baf8178f3e8f9fc1ee", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 6, + "row": 4248 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/make_mean_sample.m", + "sha256": "9a4455e4e919354496ca7b971a3c72a1a8be2bfd6351486af60d3b56107764c7", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 6, + "row": 9628 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/make_patch_video.m", + "sha256": "5a8ce694cf00448a33255c03e5c72f84fca1a1d544f1319508a73b69a84f2880", + "language": "MATLAB", + "lines": 181, + "truncated": false, + "block": 6, + "row": 15170 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/manually_refine_components.m", + "sha256": "a67cd276e62c8b1eabdacc36ec857f9398af2ee6c748ce550c22682772108550", + "language": "MATLAB", + "lines": 132, + "truncated": false, + "block": 6, + "row": 15308 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/mat2cell_ov.m", + "sha256": "c8c6bcc3164f93f1c08a90bd6c41822dde1032e5ca88aa6e693aec1c75fdce78", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 3, + "row": 10393 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/max_ht.m", + "sha256": "f0e7c0b9295a4228f1b04efa57f321fc302b49e7e8c776bb835a735c40101179", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 6, + "row": 5051 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/memmap_file.m", + "sha256": "f440e8d242bb8b16cc7f783246f2fccaff17055f08c26fe6b2f6dad9b09d2678", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 6, + "row": 10347 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/memmap_file_sequence.m", + "sha256": "cd96285060fe6c8da7fe724c5b3176a4e7ff44866306e4f701ecc2557d01b0bc", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 6, + "row": 7687 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/merge_components.m", + "sha256": "fe317950fa80ddf91100ca6e02133d23978e5853993959abfdee6b4d60d8ccd6", + "language": "MATLAB", + "lines": 159, + "truncated": false, + "block": 6, + "row": 15783 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/motion_metrics.m", + "sha256": "902ac59b8a8552fca548d7769c8ad95e32a137fefa2ca03c04bed71bf21f7795", + "language": "MATLAB", + "lines": 113, + "truncated": false, + "block": 3, + "row": 13914 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/msBatchRun2018.m", + "sha256": "0a0e90ddc09121770d44ec30e922feb201297a95c99bbf576eb5cbb05ae61f8a", + "language": "MATLAB", + "lines": 112, + "truncated": false, + "block": 9, + "row": 4980 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/msCNMFEVideo.m", + "sha256": "32948f2f24085400403b4e8fd6578007296c2ec0b4977e2fa2161f71c27fbdb3", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4498 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/msExtractBehavoir.m", + "sha256": "da6e92ea4397933b146b32558d52c85d751661e887337aebd9bfff8a1890114a", + "language": "MATLAB", + "lines": 101, + "truncated": false, + "block": 9, + "row": 4859 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/msExtractSFPs.m", + "sha256": "508a6c99a629cddfac576df1fb397178bab5f42ef110e7b38f7b46417478b170", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 9, + "row": 3381 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/msGenerateVideoObj.m", + "sha256": "4eb5b58ee1e59e3760261d75acdf2b43acef7b1fdd07271c23132878a41d1b99", + "language": "MATLAB", + "lines": 93, + "truncated": false, + "block": 9, + "row": 4823 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/msMaxFrames.m", + "sha256": "4b68a8deb47326493c71c69e95ee88845aaaa5c52e48b2b50809c3100e254cb1", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 9, + "row": 3887 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/msMeanFrame.m", + "sha256": "79ac31a5e53b24949090440ab994df3687d149d2266189c0004a3f7dadd90c66", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 4108 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/msNormCorre2.m", + "sha256": "ac68d8df562840c819c53393383b29837dbf073315a0fc9f35a7b0f442496bb6", + "language": "MATLAB", + "lines": 90, + "truncated": false, + "block": 9, + "row": 4562 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/msPlayAlignment.m", + "sha256": "c6d17258a8a30e2e0cbc83543564c8226effbadf8bff0eb511bdff2f161df350", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3570 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/msPlayVidObj.m", + "sha256": "9dac5b8b814c8ac1cbaccc113a3e4b02e1be085ff31b1a947b44d7661fd24b37", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3750 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/msPlotAnalysisSummary.m", + "sha256": "7abff2da6936beb935d64a50e3776e68da1d92c8e0b3a34381739f952b5cc557", + "language": "MATLAB", + "lines": 98, + "truncated": false, + "block": 9, + "row": 4522 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/msReadFrame.m", + "sha256": "fec1dbff845f4612cfd3c7d6b7916609de874c2472f09651775da1352e385205", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 9, + "row": 3706 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/msRun2018.m", + "sha256": "c806630a01a133ea6b45dc12d7aa74afc555fa987af5576f17c91d8b7297b5c8", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 9, + "row": 4751 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/msRunCNMFE_large.m", + "sha256": "1b727fdd07ea40844d7147d41f041fe2299d625390b0305310e96e11c181aeef", + "language": "MATLAB", + "lines": 255, + "truncated": false, + "block": 9, + "row": 5533 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/msSaveVideo.m", + "sha256": "72eea2a17d2205dc4bd5d217534c0e65dbe3c2a13d6a4dc4764a9640da259929", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3488 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/msSelectPropsForTracking.m", + "sha256": "96eb88cbfd26a0d335ce4493f953faed643725b40316160a735c7273eb10ebee", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 9, + "row": 4196 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/nnls_spatial.m", + "sha256": "c1b829434dded4ee57270b00e109be3b6d8fc4504db255049d8847fa4fbfeb8e", + "language": "MATLAB", + "lines": 110, + "truncated": false, + "block": 6, + "row": 12431 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/nnls_spatial_thresh.m", + "sha256": "6f45ddc65bada497497f50c1188da80bb331d193ac0372f92a87333ba8321b7a", + "language": "MATLAB", + "lines": 107, + "truncated": false, + "block": 6, + "row": 12389 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/normcorre.m", + "sha256": "4864d398e145114f9201aa4423edabd9b2e159d918d555196701e3f851a7f442", + "language": "MATLAB", + "lines": 531, + "truncated": false, + "block": 9, + "row": 5868 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/normcorre_batch.m", + "sha256": "7cbeec931c51ca240785477fe225f10d17ad40ec060ca3afc2083ab83e8df32b", + "language": "MATLAB", + "lines": 479, + "truncated": false, + "block": 9, + "row": 5832 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/normcorre_batch_even.m", + "sha256": "87b05bdcd2721015e3cc2c097b8820cbcbdbe4014db877f49f8c8488c106bfab", + "language": "MATLAB", + "lines": 317, + "truncated": false, + "block": 9, + "row": 5609 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/oasisAR1.m", + "sha256": "f93c5f6129efc12ddba0babd006aa6dbb80f556b56a0428ede441078b566f41e", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 9, + "row": 4835 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/oasisAR2.m", + "sha256": "4e646ffbe8df4794473e28d4e17e20e5dd24e8f64c13bba1bbc89fd267f477a2", + "language": "MATLAB", + "lines": 156, + "truncated": false, + "block": 6, + "row": 15044 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/onnls.m", + "sha256": "dfd08160a2dd537925f253748cb19c379b5263e486ee43a68e85ce72e29f486e", + "language": "MATLAB", + "lines": 214, + "truncated": false, + "block": 6, + "row": 15865 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/order_ROIs.m", + "sha256": "a94adbc0f913e8219fa470c5426807870d0f2e2a6488973b4ddf991b525ab3e4", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 6, + "row": 6556 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/order_components.m", + "sha256": "f0038100b1296bf93b80dfa90c6a576453aa0a423a4d2d687d0d5ec25e4abe6a", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 6, + "row": 9613 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/pair_neurons.m", + "sha256": "d7069a9b146c800244c106a12aaa20c09932ee68ed92505ddc7fbf387a18a724", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 6, + "row": 7988 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/plain_foopsi.m", + "sha256": "e59a8af078809d62b19cac832d5746db8a5c949d2c56c8991e11cd9490897cc8", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 6, + "row": 8274 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/plot_components_GUI.m", + "sha256": "7ebad1cf8b51c744e3cba474cb38d733e2778a203de721895729d38597e30ebd", + "language": "MATLAB", + "lines": 211, + "truncated": false, + "block": 6, + "row": 16418 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/plot_continuous_samples.m", + "sha256": "6e448bf50c99f9124e2e66b014541c22be97a9dcb88f80b62d96d099b4f4bdea", + "language": "MATLAB", + "lines": 143, + "truncated": false, + "block": 6, + "row": 15968 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/plot_contours.m", + "sha256": "ab643f8fce9c53574bb248f8df7ca4cda95210e61530618f715fd964d97b1e5b", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 6, + "row": 13014 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/plot_marginals.m", + "sha256": "310d597a08c0fc85fa5cad447f0c2d76b1a599ec587c2fdcdcdd1f84d5f84c20", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 6, + "row": 9481 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/preprocess_data.m", + "sha256": "c7e4681991d6c0abdb75e7cb59cd2b66833d530fe1410601a1bda136bbc38fd5", + "language": "MATLAB", + "lines": 148, + "truncated": false, + "block": 6, + "row": 15119 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/read_raw_file.m", + "sha256": "ce1252a94e049b9307319683311f4b8686bcf06901cd2f1630718fb874823b99", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 3, + "row": 10183 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/refreshdisp.m", + "sha256": "146f1db5a43fefc5786d3b0db7e9b873eee2b0f7d580de6adbf634d8712a4b5e", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 3, + "row": 8313 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/register_frame.m", + "sha256": "d4f0e490944344c6b7262662437882728e8245cb0ac4a8933eedd508287451ce", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 3, + "row": 13317 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/removeSpike.m", + "sha256": "0e6b84586dadfb30ec5cde31df0cd1e82c7fde249eae1d01ae8a774bd57dc9ac", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 6, + "row": 11320 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/remove_baseline.m", + "sha256": "9409f84409699f52cc8e77c271db6d0a2c3678b7d2be79423509fa1a40ed37a4", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 6, + "row": 3222 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/remove_boundaries.m", + "sha256": "b167a607e42cee568ad1e334f5ed0cfc02ec5371d3e003f522dc436480475089", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 3, + "row": 11983 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/replaceSpike.m", + "sha256": "ef59878b52d43d5df91bb3c2772a2fc7eb3d0bd1310fb2aab76358b797843e48", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 6, + "row": 12987 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/runMsCluster.m", + "sha256": "7a6ea7010e5c732654acee53310451795333351b218b9b8c274b7b898cb00dc7", + "language": "MATLAB", + "lines": 91, + "truncated": false, + "block": 9, + "row": 4658 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/runMsJobArray.m", + "sha256": "a68042b7fcb8e3244a0605285baad90141b4020f9d1d14ab8f3207b60a846a91", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 9, + "row": 3012 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/run_CNMF_patches.m", + "sha256": "cd5976c9b62e361a72b3c57cd96e536e26ff6ae2da3d95d34db9d517589316b4", + "language": "MATLAB", + "lines": 246, + "truncated": false, + "block": 6, + "row": 17421 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/run_movie.m", + "sha256": "fe8205197c6d9556574fc3da325516dcc83dc8fc763901a9b6fa85d72f4e464e", + "language": "MATLAB", + "lines": 120, + "truncated": false, + "block": 6, + "row": 13742 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/running_percentile.m", + "sha256": "607530633de08a73b550484b5ce8819aec0adfa7207ca91518d84e018ac235cf", + "language": "MATLAB", + "lines": 122, + "truncated": false, + "block": 9, + "row": 4926 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/samples_cell2mat.m", + "sha256": "9874c960237c445b0ae660b9d0374fea306b8daef046367e046e630490c65ddd", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 6, + "row": 4899 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/sampling_demo_ar2.m", + "sha256": "1bc34e61324c574e0789c31067a095c954a4367484a3092c4475786b3c2e0a4d", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 6, + "row": 11235 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/saveash5.m", + "sha256": "60f52d0b565b8000cee6737e2828955a056edaafec10c3c8c17f15bf3126a511", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 3, + "row": 11099 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/saveastiff.m", + "sha256": "b6441c992acf56a8487c74161e02272d9af7d5aeb640ede092c4c2f3ada9106a", + "language": "MATLAB", + "lines": 304, + "truncated": false, + "block": 9, + "row": 5601 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/savefast.m", + "sha256": "7a2e3a1c48dedb94b441cc3dfafb72ebf44818c50e5029126a7ad71cb31aa17f", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 3, + "row": 11993 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/savegcf.m", + "sha256": "bef9492672c90a974a5b216f3ec050901e76bc451216c4bcdb8cd7912f778571", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 6, + "row": 2597 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/setup.m", + "sha256": "b05452cadb3b0974f5552bb1eb6e9700fc2837b94f844925aae3d289bb32cd3a", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 6, + "row": 7607 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/shift_reconstruct.m", + "sha256": "5abebf9b11a507951a3114beccb1400b421a0fcd6700c1d57b9fccc0a8729975", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 3, + "row": 11586 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/smod_bigread2.m", + "sha256": "f83ddac1f1bd6d5fab21293413449ca0b131934524d7f742d6526cd77702245e", + "language": "MATLAB", + "lines": 446, + "truncated": false, + "block": 9, + "row": 5694 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/sparse_NMF_initialization.m", + "sha256": "1f6bd66501dcc7f16d984af0937de205cadcf83d69f8cfa11b40f28c15bba4a5", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 9, + "row": 4542 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/spatial_constraints.m", + "sha256": "10ed0140341c852f7d4d590ca84691809aa4d38c18560c3050ea65b7dc208922", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 6, + "row": 7954 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/split_frame.m", + "sha256": "ff02e0fa58762ae4f3b01af60cff4ff268710fd0f6e82fe240698e58e0158ce7", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 3, + "row": 8735 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/string2hash.m", + "sha256": "90363103fd09c94ea811781622a8bdcebe9e5553dba946f51c10f847b6f277ce", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 6, + "row": 8120 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/struct2neuron.m", + "sha256": "d24e41e80291552db78480ec31b32a7b7ce6ecd31b11e4aac2267a4a73fa3bf9", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 6, + "row": 3831 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/svdsecon.m", + "sha256": "8fd8b2945fc21cf326d2d1769d39327ce091113688168efe3ada77301651dbdf", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 6, + "row": 6410 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/tau_c2d.m", + "sha256": "6ac43d49201dbae1f343c9211f1063f6ee20b4a4ffd65cbfbf76548c0ffb0d94", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 6, + "row": 3997 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/tau_d2c.m", + "sha256": "ca95ad49957a8939b10e930ab34f0069d1689489a04c37c083ed01494ac6efd0", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 6, + "row": 4371 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/test_oasis.m", + "sha256": "30ebb3708064dd2bea0cd8e2e95dc60291496ca3d03994060a74855080550fe7", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 6, + "row": 5941 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/threshold_components.m", + "sha256": "9d15b698cbfdb9d27a0f4f3725cc20137670fb24a6aee42a2c4a308d8e959ce1", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 6, + "row": 10799 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/thresholded_nnls.m", + "sha256": "35158d63f15330ed937ca1a8d248f4bdddaef532ce0c3ecf3569ccfbc523c2fb", + "language": "MATLAB", + "lines": 220, + "truncated": false, + "block": 6, + "row": 15908 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/thresholded_oasisAR1.m", + "sha256": "e4b7b02a9934737081f8c55edf37800d48a79090e90de36d8d6a4b119de1b60d", + "language": "MATLAB", + "lines": 267, + "truncated": false, + "block": 9, + "row": 5435 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/thresholded_oasisAR2.m", + "sha256": "f60c1fec106e5793b1c60f16c9848a6f8ddd28a2804da7507964bf942faeca45", + "language": "MATLAB", + "lines": 322, + "truncated": false, + "block": 6, + "row": 17317 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/tif2mat.m", + "sha256": "69eb42818605cfafe6c3deb17ad69b411a27562a1b597eda302f346be23c3846", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 6, + "row": 8486 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/tiff_reader.m", + "sha256": "a04d8af825a7b42ef67037f7484ef778fc5da8cc828a7fbc51c8764c95649bcf", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 6, + "row": 3077 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/update_g.m", + "sha256": "d9d31ce0f267af9741ed56e023f2a7d0a3477d9b0099ce4fbe27bf5cf9f57110", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 6, + "row": 10465 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/update_kernel_exp2.m", + "sha256": "41c4c318d01f59ac17a571365fd5a4585d5dd4f721496a132720ef80e09aae59", + "language": "MATLAB", + "lines": 131, + "truncated": false, + "block": 6, + "row": 13686 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/update_lam.m", + "sha256": "a04aaa1bb7ef76d9fb9d958cfa07f2671b784fea1e8d58d1601bb069ceff03b3", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 6, + "row": 9390 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/update_order.m", + "sha256": "b56751e2a2bb511ca25eed838e840619bf823f2452d4ae0e86ef86efb925ecc4", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 6, + "row": 5655 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/update_spatial_components.m", + "sha256": "c8f7eb58b2155a73b3060a76c8e46a140c5a5059b407234b60fe5c7a4d492158", + "language": "MATLAB", + "lines": 144, + "truncated": false, + "block": 6, + "row": 15283 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/update_spatial_components_nb.m", + "sha256": "c97a9b445ffcd43362443eec54604cbc00feff90c152b2ed95e7436aa6188919", + "language": "MATLAB", + "lines": 134, + "truncated": false, + "block": 6, + "row": 15002 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/update_tau.m", + "sha256": "98c2c6d176c784403b9875be3d51cba83d670a24ef18b9cc4c94cc1d516bd2c9", + "language": "MATLAB", + "lines": 144, + "truncated": false, + "block": 6, + "row": 14296 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/update_temporal_components.m", + "sha256": "6f635112d5ce4527e94b3448ce41ef3887a098bfc78969efd2add614786f91cc", + "language": "MATLAB", + "lines": 389, + "truncated": false, + "block": 6, + "row": 18580 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/update_temporal_components_nb.m", + "sha256": "7a07310771e6d42779cb307c5edcd4fe476d278d83ef26644e4f7b65461ae402", + "language": "MATLAB", + "lines": 378, + "truncated": false, + "block": 6, + "row": 18567 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/view_components.m", + "sha256": "cb0872c5be0da75c5f5f1b82cbf1e974487e293caa60c85c47c549ed41712152", + "language": "MATLAB", + "lines": 178, + "truncated": false, + "block": 6, + "row": 15931 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/wrapper.m", + "sha256": "94c828440e2b4f54f85fd251198bf94dea6319feb20137e2dfda861f35a19f30", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 6, + "row": 3634 + }, + { + "path": "MatlabPath_CNMFe_and_NoRMCorre/writeTiff.m", + "sha256": "fedb2553abaad1edd6faead404297b1cac742b2d40ff6379c0b4296043e2861b", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 6, + "row": 2572 + }, + { + "path": "README.md", + "sha256": "a94e0984b8ac4f8472e80ea3cc85ff94e69eeaa0409958c81ce3a4bd318bc6d4", + "language": "Text", + "lines": 27, + "truncated": false, + "block": 9, + "row": 14547 + }, + { + "path": "Separate Steps/runConcatStep1.m", + "sha256": "e95cf7a9597bae217e0524215ecc70e0842a128067a3af289971a2e9bb582789", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 9, + "row": 4615 + }, + { + "path": "Separate Steps/runConcatStep2.m", + "sha256": "0954abe9aeb1248a13cf25d2dd32afb1e8c5ba184fbf6d8a8954d746a1ed921b", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3889 + }, + { + "path": "Separate Steps/runConcatStep3to4.m", + "sha256": "f61d061d5d5a34ab0ca7bd14797e45d9307f3c90405d33bc7e325351988754fa", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 9, + "row": 4332 + }, + { + "path": "Separate Steps/runConcatStep6.m", + "sha256": "9b77913073470978c375259ec5f3314e41c4e0497aa29c32d4f3f4d2ace4393d", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3736 + }, + { + "path": "Separate Steps/runConcatStep8.m", + "sha256": "3f782a17f05418401fd77f2df253204e8756d07541e73a0c732920f48ebddd3b", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3205 + }, + { + "path": "concatSessionsPipeline.m", + "sha256": "662fb26217e1cc9959290898fd2055a830719286f2423464014f8ae79fa3c00a", + "language": "MATLAB", + "lines": 154, + "truncated": false, + "block": 9, + "row": 5307 + }, + { + "path": "utils/natsort.m", + "sha256": "137c16c69d621c1d4091471352a46f6681f2519f1d902f0a0ff9183cee0eef55", + "language": "MATLAB", + "lines": 344, + "truncated": false, + "block": 9, + "row": 5596 + }, + { + "path": "utils/runSeparateSessions.m", + "sha256": "7d6be96ea24d6ec85d8d965902e765c0129997e0134af794e5d5fcc13e981ca2", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3595 + } + ] +} \ No newline at end of file diff --git a/manifests/71/github.com__deepdrugai__dpeb.json b/manifests/71/github.com__deepdrugai__dpeb.json new file mode 100644 index 0000000000000000000000000000000000000000..0539bd6f0a6409e24970c4e98a801c9486d1f71c --- /dev/null +++ b/manifests/71/github.com__deepdrugai__dpeb.json @@ -0,0 +1,1200 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/deepdrugai/dpeb", + "url": "https://github.com/deepdrugai/DPEB", + "host": "github.com", + "commit": "b93e220106dd80a7f30c60b9ea72fa8feb1a762d", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "93564699031514228a68630e80f34a9b5c2ab042bb990d972b184a33715ae114", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2858 + }, + { + "path": "README.md", + "sha256": "f720641433aa00bbf21d8aece5ea17d845e94acfcb293872f63aecd2fa8e4ab9", + "language": "Text", + "lines": 365, + "truncated": false, + "block": 9, + "row": 14737 + }, + { + "path": "alphafold/Representations_AlphaFold2_v3.23.py", + "sha256": "4d74f140d0ca9862971f6496641e8abae930b1f936ea1a88970513dd05171aca", + "language": "Python", + "lines": 265, + "truncated": false, + "block": 9, + "row": 10771 + }, + { + "path": "alphafold/alphafold/__init__.py", + "sha256": "81d285f77e444308aaf387bf06ecbbf7ccca4461d62db3e9ad9fe462393e5d82", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 3, + "row": 18569 + }, + { + "path": "alphafold/alphafold/common/__init__.py", + "sha256": "144c001f817a11c018cb618354e7fb67e52cd76d01b74667b02fc0657a5874e7", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 3, + "row": 18556 + }, + { + "path": "alphafold/alphafold/common/confidence.py", + "sha256": "87e96713aa98e060a388200d4a96e9cda70e1cace1c81272dfc8b8f6f38235a8", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 6, + "row": 42222 + }, + { + "path": "alphafold/alphafold/common/protein.py", + "sha256": "7236d004959279b427cab11502d582d1540ea1d11d57c607a7969499ec7bfbf2", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 9, + "row": 10325 + }, + { + "path": "alphafold/alphafold/common/protein_test.py", + "sha256": "9101b8d92a33b20c974c19eaae69d78a80df49a20d1c6d738e3a58594b1d24dc", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8817 + }, + { + "path": "alphafold/alphafold/common/residue_constants.py", + "sha256": "bee473983562478da9bb9caee20b7e0bfe257ec2751ddba2fc0af8ec380136e8", + "language": "Python", + "lines": 895, + "truncated": false, + "block": 9, + "row": 12326 + }, + { + "path": "alphafold/alphafold/common/residue_constants_test.py", + "sha256": "f93f3f54c2e7ed85b1d13058e5d6ac824d8f97522b79eba1c34502b0bd0287d5", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 9, + "row": 10688 + }, + { + "path": "alphafold/alphafold/data/__init__.py", + "sha256": "9fbad6d49a22e5687eba7f57058bbbbe75f6248997ca51f83cceb6071db65b1d", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 3, + "row": 18535 + }, + { + "path": "alphafold/alphafold/data/mmcif_parsing.py", + "sha256": "266db147f42c586ac9dbd2681ca8ab3ca751df633ed457419614b6762bd3cdca", + "language": "Python", + "lines": 384, + "truncated": false, + "block": 9, + "row": 11349 + }, + { + "path": "alphafold/alphafold/data/parsers.py", + "sha256": "d95186ad8ca5753cf05d8469e78479359fce412b1dd8c458e612382b2697ce6f", + "language": "Python", + "lines": 365, + "truncated": false, + "block": 9, + "row": 11225 + }, + { + "path": "alphafold/alphafold/data/pipeline.py", + "sha256": "8bc146cf477d13c2d21d181328a906e7638c27a3b993c93911c521351b8e6590", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 9, + "row": 10367 + }, + { + "path": "alphafold/alphafold/data/templates.py", + "sha256": "c0a8fd2096e051a93ae0b5056c871fce9e917c835d2a971da6bca365a06cd224", + "language": "Python", + "lines": 911, + "truncated": false, + "block": 9, + "row": 12357 + }, + { + "path": "alphafold/alphafold/data/tools/__init__.py", + "sha256": "99b6dc388add0ed76fba35e40cf36a64f17e88f5b830dd7eaee48853c92f4c31", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 3, + "row": 18544 + }, + { + "path": "alphafold/alphafold/data/tools/hhblits.py", + "sha256": "0050adebf1769e9d9773aba129308864e397c63aa075775e7291bf64bdb895c2", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 6, + "row": 42379 + }, + { + "path": "alphafold/alphafold/data/tools/hhsearch.py", + "sha256": "c20d7034bf78663a3589385627324122884fae7cc5974f45c0ed99922a9c5b54", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 6, + "row": 36171 + }, + { + "path": "alphafold/alphafold/data/tools/hmmbuild.py", + "sha256": "21861db34cf9f574009daa57c9790d7b9fd58a956c6ad66c1fcb05ea5bb06d39", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 9, + "row": 9309 + }, + { + "path": "alphafold/alphafold/data/tools/hmmsearch.py", + "sha256": "9f8491e92196d77d2f2ee3ce5c2b61dff0036f9fc2718e1f9f0d57b311573fbd", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 9, + "row": 8533 + }, + { + "path": "alphafold/alphafold/data/tools/jackhmmer.py", + "sha256": "b954372b986ad3af9871c7fe557e9cc5b323c810ebd57a5312eb54f93d38ee76", + "language": "Python", + "lines": 198, + "truncated": false, + "block": 6, + "row": 45471 + }, + { + "path": "alphafold/alphafold/data/tools/kalign.py", + "sha256": "b3689c0799e82eb092cf43fc59326fe6a4184d8a0b7c6fcc7867f49f42a50778", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 6, + "row": 37114 + }, + { + "path": "alphafold/alphafold/data/tools/utils.py", + "sha256": "e64ec392a2be1c706afee0eee41cfbe39c2b7fa1dad864c364fbe3be3689cfdc", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 3, + "row": 19245 + }, + { + "path": "alphafold/alphafold/model/__init__.py", + "sha256": "a237ba59c7c0a012e927739e8b3e984b283f696af466dddab2d920c3aac087be", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 3, + "row": 18510 + }, + { + "path": "alphafold/alphafold/model/all_atom.py", + "sha256": "d78d952aa8954ea5332102b4bec9b6862f95aaa21b401e251de6f5ff8f35bb78", + "language": "Python", + "lines": 1143, + "truncated": false, + "block": 9, + "row": 12468 + }, + { + "path": "alphafold/alphafold/model/all_atom_test.py", + "sha256": "a23a858d058d0a76a4f711e5623d42fed0f7b0f8c3a8f13474ce0fe32afe032d", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9353 + }, + { + "path": "alphafold/alphafold/model/common_modules.py", + "sha256": "2b92e47a8251c1270bd9bfca448ccaf5b08ecfe597d4a11a70cb64ba9e52678e", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 6, + "row": 35274 + }, + { + "path": "alphafold/alphafold/model/config.py", + "sha256": "2ab4207b1691ae159ee312d8bc63f7cbaa3bb619f6de911e0a529a32f033e696", + "language": "Python", + "lines": 403, + "truncated": false, + "block": 9, + "row": 11540 + }, + { + "path": "alphafold/alphafold/model/data.py", + "sha256": "a7cca67acd49324b012260ef49fab038baac2d80bc266b00329cfaee7855e9ee", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 9, + "row": 7341 + }, + { + "path": "alphafold/alphafold/model/features.py", + "sha256": "54001559126618150949924983032c0708d7b1c8a7e7172899d65a9a78045b82", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 8922 + }, + { + "path": "alphafold/alphafold/model/folding.py", + "sha256": "c28ddb70dcdb575db377e808b032d5d8badcba7a2474523bbd11dbc8b3d860cb", + "language": "Python", + "lines": 1011, + "truncated": false, + "block": 9, + "row": 12360 + }, + { + "path": "alphafold/alphafold/model/layer_stack.py", + "sha256": "0fd8863656fa6c9b069569343eed823977cfcc87b5a3f8e12ae8e54a2451c4db", + "language": "Python", + "lines": 274, + "truncated": false, + "block": 3, + "row": 25025 + }, + { + "path": "alphafold/alphafold/model/layer_stack_test.py", + "sha256": "373db6a698a7f0c07baf6bfb94f123db9c36526bfc725b1ef608f4fd5690b6d9", + "language": "Python", + "lines": 336, + "truncated": false, + "block": 9, + "row": 10871 + }, + { + "path": "alphafold/alphafold/model/lddt.py", + "sha256": "22ebd462ad0493489fb0813fbb5392c4b26cca8807598c8ca12cf10e2ffa991d", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 3, + "row": 21737 + }, + { + "path": "alphafold/alphafold/model/lddt_test.py", + "sha256": "3f083a6c29c4d53499c1883418edec72d481f9593813b3e917c6b5feaf0f9974", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8150 + }, + { + "path": "alphafold/alphafold/model/mapping.py", + "sha256": "5ca97a20edf71ccc3d616a7818f507d245db65cc4d7b9287bf8d110cf5baf19b", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 9, + "row": 10379 + }, + { + "path": "alphafold/alphafold/model/model.py", + "sha256": "0148115146a1c709ee64f573bb0968a126aa6c940d9fb87b86a71790eeda0db5", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 9, + "row": 9537 + }, + { + "path": "alphafold/alphafold/model/modules.py", + "sha256": "ba7bc0d68e6f0cfdee75a49926993b405f82dc49e7cb982b826de445deb76762", + "language": "Python", + "lines": 2096, + "truncated": false, + "block": 9, + "row": 12582 + }, + { + "path": "alphafold/alphafold/model/prng.py", + "sha256": "09e62b8b2c24a2aa41704c0b474bfa45cc1b5a9121bf9d883232278de25f2a33", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 3, + "row": 20143 + }, + { + "path": "alphafold/alphafold/model/prng_test.py", + "sha256": "91e8079e7b82a2fcad308a1b47b9a0bf2aa941cdea1eb84c8b45e8f0c398baac", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7294 + }, + { + "path": "alphafold/alphafold/model/quat_affine.py", + "sha256": "dfc1d3e3df0e1966ed361f4dbaf9fc59fd525a8458bb7c4187c9c70d168ef749", + "language": "Python", + "lines": 459, + "truncated": false, + "block": 3, + "row": 26768 + }, + { + "path": "alphafold/alphafold/model/quat_affine_test.py", + "sha256": "376e50b603966ef2be540ae9a457fcc3b528e6edadf5e269bd244045aa6070bf", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 9477 + }, + { + "path": "alphafold/alphafold/model/r3.py", + "sha256": "e84335397dac31e2877865d839c566d25ee938819f37dd795f7c1bc606363a82", + "language": "Python", + "lines": 322, + "truncated": false, + "block": 9, + "row": 10947 + }, + { + "path": "alphafold/alphafold/model/tf/__init__.py", + "sha256": "7ee47be79cc30b61cf7111de0d29f6fa5e15737c741145502e998ff7b657ba05", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 3, + "row": 18534 + }, + { + "path": "alphafold/alphafold/model/tf/data_transforms.py", + "sha256": "e706d117176fdfa753183e1ed0db4e74819fe5a904a0f61be49c90ce0589f70c", + "language": "Python", + "lines": 626, + "truncated": false, + "block": 9, + "row": 11927 + }, + { + "path": "alphafold/alphafold/model/tf/input_pipeline.py", + "sha256": "1cf64535cee930df2da1fd6f833bf7324dab8e39c9c2e3e426925513b41e5b46", + "language": "Python", + "lines": 166, + "truncated": false, + "block": 9, + "row": 9603 + }, + { + "path": "alphafold/alphafold/model/tf/protein_features.py", + "sha256": "aa8eb82c54317d559b554398a759fea23532e2e6d7ad701f85b889cdf5ba919e", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 9486 + }, + { + "path": "alphafold/alphafold/model/tf/protein_features_test.py", + "sha256": "2e27df5c206a0b586864d7dbaf255131dff9c466463f4d7b21d54365bc8f2217", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7730 + }, + { + "path": "alphafold/alphafold/model/tf/proteins_dataset.py", + "sha256": "9b97dceb7f8b028d8640f6168f381e1798c69b29109754bc7eac17876f923a6d", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 9, + "row": 9952 + }, + { + "path": "alphafold/alphafold/model/tf/shape_helpers.py", + "sha256": "0bdb468834e3f022d362c08d79f6f2a8f472120b0b660d3cd619d97721a84de1", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 3, + "row": 19463 + }, + { + "path": "alphafold/alphafold/model/tf/shape_helpers_test.py", + "sha256": "fa424062a7fead354ddd8fc71860f1295facfbd6b4c2682e9aa499f03c58970c", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7326 + }, + { + "path": "alphafold/alphafold/model/tf/shape_placeholders.py", + "sha256": "91457589ca3a16036ecd51b9674f8c3933492841be81f02eb9ddcfb206df1c87", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 3, + "row": 18759 + }, + { + "path": "alphafold/alphafold/model/tf/utils.py", + "sha256": "cbee68e094dd27c7cd5f1baf79daa4883af7a50a9ba2f6d190e183281804909a", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 3, + "row": 19308 + }, + { + "path": "alphafold/alphafold/model/utils.py", + "sha256": "6e6ef26bfa03521dd9c225306869911538542696c6302743cab8c0b5c2ee032b", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 6, + "row": 33441 + }, + { + "path": "alphafold/alphafold/relax/__init__.py", + "sha256": "0b52f881c1ab7a485ad2fc581d2c42c486c54f6b5ec00a46b7f3ceed0e786e3b", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 3, + "row": 18511 + }, + { + "path": "alphafold/alphafold/relax/amber_minimize.py", + "sha256": "ca0d03bdc42a1f2b58c8a11e54f4e12ae8c1fdb2a8b0f79f71516ec37328f46f", + "language": "Python", + "lines": 547, + "truncated": false, + "block": 9, + "row": 11882 + }, + { + "path": "alphafold/alphafold/relax/amber_minimize_test.py", + "sha256": "bb96646d2c1e7cdedef7f71b8a1e6bf57806e64af35aaad0e29a3be62c9d246d", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 9, + "row": 9178 + }, + { + "path": "alphafold/alphafold/relax/cleanup.py", + "sha256": "7739a3f0a24061579c5f9720d60163d7b67b09a246c802e217340e2f22a5c9fd", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 3, + "row": 22823 + }, + { + "path": "alphafold/alphafold/relax/cleanup_test.py", + "sha256": "97fa75b6de8da99c45195e37273be66f670a53ac3904a410546408655991f5e6", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 9, + "row": 9894 + }, + { + "path": "alphafold/alphafold/relax/relax.py", + "sha256": "401c1ba53a3f573ef7cbc2e208a18d0627239001cd8205d1d13352c5f382e850", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 9, + "row": 8646 + }, + { + "path": "alphafold/alphafold/relax/relax_test.py", + "sha256": "65974003bf5a3bf7e931c7155ada55637e75ff3f7af65c394375090ecb12a44e", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 8959 + }, + { + "path": "alphafold/alphafold/relax/utils.py", + "sha256": "f862100fe8a91f761c7fbf6fb7c370ffca95a8323f496c275dc2168ce4d93bd1", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8503 + }, + { + "path": "alphafold/alphafold/relax/utils_test.py", + "sha256": "5dc8dd52b9778614dd4b28699675a4a92b2bcac526357d54f8d16ccc3406ced3", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7908 + }, + { + "path": "alphafold/alphafold_/Representations_AlphaFold2PredictStructure.ipynb", + "sha256": "035aa9448405e1dd0926f0fdd0c6e2d95e31533f3f1f4cb42dedcccd9303ee42", + "language": "Jupyter", + "lines": 564, + "truncated": false, + "block": 9, + "row": 2651 + }, + { + "path": "alphafold/alphafold_/Representations_AlphaFold2_v3.ipynb", + "sha256": "2bfaad20af947b1aef3fbbc82c6e2bca78ea25aec124b2edb8ab73b5e17d7655", + "language": "Jupyter", + "lines": 812, + "truncated": false, + "block": 9, + "row": 2703 + }, + { + "path": "alphafold/alphafold_/docker/run_docker.py", + "sha256": "a5470f8d2561fe4aa2b1d78f42dcd791131c3883f7976cf0f37fb0e7ca80c2b5", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 9, + "row": 10193 + }, + { + "path": "alphafold/alphafold_/notebooks/AlphaFold.ipynb", + "sha256": "42d5b0cbc397b1ade4b740784ebc48ca20c9df62d32df9e104e418c8a396da65", + "language": "Jupyter", + "lines": 592, + "truncated": false, + "block": 9, + "row": 2680 + }, + { + "path": "alphafold/alphafold_/run_alphafold.py", + "sha256": "ef1f2530889aa0a56ebb17221cbd3f22b68a112e19cedbe56cf5f5f52798510b", + "language": "Python", + "lines": 303, + "truncated": false, + "block": 9, + "row": 11128 + }, + { + "path": "alphafold/alphafold_/run_alphafold_test.py", + "sha256": "cb956c2b45815fe69498755194dc5aad6bba49ccfac00f678b48d41ea60fe360", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 9, + "row": 8184 + }, + { + "path": "alphafold/alphafold_/scripts/download_all_data.sh", + "sha256": "354e951abfbca0fc84647dc3451bdd80a065c43b771ab06e0d9d286b55f5c345", + "language": "Shell", + "lines": 68, + "truncated": false, + "block": 9, + "row": 14260 + }, + { + "path": "alphafold/alphafold_/scripts/download_alphafold_params.sh", + "sha256": "4f50afd146e9415cce585bc6c3c125ee1602f4ba40f8199bc03caf329a9b9bc7", + "language": "Shell", + "lines": 41, + "truncated": false, + "block": 8, + "row": 8008 + }, + { + "path": "alphafold/alphafold_/scripts/download_bfd.sh", + "sha256": "4617a9385a6d8eeb7533858214cb5370c1ab920e18097683c30eca703f1155d6", + "language": "Shell", + "lines": 43, + "truncated": false, + "block": 8, + "row": 8138 + }, + { + "path": "alphafold/alphafold_/scripts/download_mgnify.sh", + "sha256": "0e712b1437d2ecd9505f06845129bedd666bcf09e3e748028100cb2514188c80", + "language": "Shell", + "lines": 43, + "truncated": false, + "block": 8, + "row": 8034 + }, + { + "path": "alphafold/alphafold_/scripts/download_pdb70.sh", + "sha256": "2f65a88055e3b1745b4df4b5de1f2ab8be28f7a671f9e210be56ce4b9a907b8c", + "language": "Shell", + "lines": 41, + "truncated": false, + "block": 8, + "row": 8019 + }, + { + "path": "alphafold/alphafold_/scripts/download_pdb_mmcif.sh", + "sha256": "c59261c04e1792e6eb0c0c14a9177f54d26c8b0546e2aabd51a8d22feeac1843", + "language": "Shell", + "lines": 61, + "truncated": false, + "block": 8, + "row": 8401 + }, + { + "path": "alphafold/alphafold_/scripts/download_small_bfd.sh", + "sha256": "2dc031ba594e86ee72ee326793cda854c9d207b0a0405a39729717eea89dbab2", + "language": "Shell", + "lines": 41, + "truncated": false, + "block": 8, + "row": 7972 + }, + { + "path": "alphafold/alphafold_/scripts/download_uniclust30.sh", + "sha256": "8aceaecf895082e8742a2d5877fadd0d09bdeb07cfd4fb4666382b0c90828e4c", + "language": "Shell", + "lines": 43, + "truncated": false, + "block": 8, + "row": 8129 + }, + { + "path": "alphafold/alphafold_/scripts/download_uniref90.sh", + "sha256": "8815c7af651777e90372701e2939f8b6343f097fd04ae26a777828af1a7a2e16", + "language": "Shell", + "lines": 41, + "truncated": false, + "block": 8, + "row": 7946 + }, + { + "path": "alphafold/alphafold_/setup.py", + "sha256": "9abaa3f7771f7ada3370c48cc49d72f84b522918a46e6d50de9bc2e802e7bb58", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 6, + "row": 31005 + }, + { + "path": "alphafold/eppi_to_alphafold_df_conversion.py", + "sha256": "976206d905920c313bb4cce58d92dcaa11d51a15433829653c26fa38d6406cab", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 8683 + }, + { + "path": "alphafold/my_functions.py", + "sha256": "30a781fc51ac8a7e5926efa080d13fa67bec6ba9aaec15f154e646ac8b83c31f", + "language": "Python", + "lines": 310, + "truncated": false, + "block": 9, + "row": 10990 + }, + { + "path": "alphafold/run_alphafold.sh", + "sha256": "123051c7ed4f0c33acd783df039a3d8429af357effb4d87251d3a04948ab7f71", + "language": "Shell", + "lines": 110, + "truncated": false, + "block": 9, + "row": 14297 + }, + { + "path": "alphafold/running instructions.py", + "sha256": "aed842e0c13be9578fbf860407ba65ed5ebaf315c9aa2cadf84e29bc02b0a69c", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6843 + }, + { + "path": "alphafold/setup_environment.sh", + "sha256": "abb3c68ddead1a06dd00b853b2994ae960c16eff931c141265f84a940f251086", + "language": "Shell", + "lines": 63, + "truncated": false, + "block": 9, + "row": 14261 + }, + { + "path": "alphafold/untitled0.py", + "sha256": "948705f1fb10413b4ca3fe63b50df200de0c54b075196c784cec799654cd3342", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7567 + }, + { + "path": "alphafold/untitled2.py", + "sha256": "c88539ed7a1d112a90a2a8cd7efcb32e150018039eea3df01ecf6ea63631c6ac", + "language": "Python", + "lines": 835, + "truncated": false, + "block": 9, + "row": 12230 + }, + { + "path": "alphafold/untitled3.py", + "sha256": "691fc0c14a3cf62a5125067c9d4abf1f09991b2d31ad54979b8d9c0506eba1a8", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 9, + "row": 9157 + }, + { + "path": "bioembedding/extract_bio.py", + "sha256": "350b2fd85d05ee532cb8ad566b149be1bd3800211693c66ca506fff9761ad90d", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 9015 + }, + { + "path": "bioembedding/load bioembed.py", + "sha256": "9d68091723da6b95e9ee344d73a36a9b188b48b9d279158e00da7f821be9d0b7", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 7787 + }, + { + "path": "clustering and classification/supervised_clustering - alphafold.py", + "sha256": "c67c291cef4cfeb6ad89eef971ab8b62505e8fa05a40607865b551575e3b2eaa", + "language": "Python", + "lines": 476, + "truncated": false, + "block": 9, + "row": 11883 + }, + { + "path": "clustering and classification/supervised_clustering - bioembedding.py", + "sha256": "4be5be5a70907f6bb9c9cdbe07a5b57d2765a4e31db690f8f64c1dc8eee6b8a8", + "language": "Python", + "lines": 479, + "truncated": false, + "block": 9, + "row": 11891 + }, + { + "path": "clustering and classification/supervised_clustering - esm.py", + "sha256": "8dca28ec0df00f89aa8fc3ac2ec70cf09d303ea3c5f6a599e8064b0a96644fa9", + "language": "Python", + "lines": 481, + "truncated": false, + "block": 9, + "row": 11885 + }, + { + "path": "clustering and classification/supervised_clustering - protvec.py", + "sha256": "422e183205e5d93d72da3f8acb49a096a20ff9f80c168060b17ac690b35b7530", + "language": "Python", + "lines": 496, + "truncated": false, + "block": 9, + "row": 11938 + }, + { + "path": "clustering and classification/unsupervised_clustering_and downstream_classification_Bio.py", + "sha256": "b7a3ed87dbde2bd28a12ddbbc8da5871162296c36802207e66530cfebd801195", + "language": "Python", + "lines": 504, + "truncated": false, + "block": 9, + "row": 11951 + }, + { + "path": "clustering and classification/unsupervised_clustering_and downstream_classification_ESM.py", + "sha256": "477989fefc2375d17dd1ba376ef2bb6bcadcc0047c352046a1220f5e765a8eea", + "language": "Python", + "lines": 505, + "truncated": false, + "block": 9, + "row": 11948 + }, + { + "path": "clustering and classification/unsupervised_clustering_and downstream_classification_Protvec.py", + "sha256": "f8df527ec258e39b10baa91241e421be98c00809bb084718cf16f9512e3542f5", + "language": "Python", + "lines": 520, + "truncated": false, + "block": 9, + "row": 11977 + }, + { + "path": "clustering and classification/unsupervised_clustering_and downstream_classification_alphafold.py", + "sha256": "a8612f7f65896eff041e1b8e2809eb86b140c42305a65f0bfa2dca72869a86d2", + "language": "Python", + "lines": 504, + "truncated": false, + "block": 9, + "row": 11944 + }, + { + "path": "download_dpeb_from_s3_bucket.ipynb", + "sha256": "727999a4bffab23a3d0216b9d8c54a790d7c9f8a1f03b859bf5bcbe3bc0089a8", + "language": "Jupyter", + "lines": 128, + "truncated": false, + "block": 9, + "row": 2289 + }, + { + "path": "esm/esmfold2_embeddings.py", + "sha256": "7e8bcde8b462ff0674ffec812ef127a8b078203bae2c4a603e9e0ea68c1b45bf", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 8923 + }, + { + "path": "esm/get_esm_embeddings.py", + "sha256": "3367ff4f6ab3568d6a525c9682dc2cb4e08ebf73028ba2b5cb01a9ac745840bf", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 9, + "row": 9272 + }, + { + "path": "node classification/clustering1.1.py", + "sha256": "60ebbe5e43bb1f41f732b5b4ce32d1e52c72ef2084a84b0b2adf1e4a8ff49fcd", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 8024 + }, + { + "path": "node classification/console_outputs/final result.py", + "sha256": "4cca04371bd84ab2d35b5ff5b05c541f86d44b1a3d3e10b32f6cf81ef7a3681e", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 6995 + }, + { + "path": "node classification/get_enzymes.py", + "sha256": "cb4cca398a4bd0257e3b98823b673a65160777128cef768af480fb6574c08bb5", + "language": "Python", + "lines": 310, + "truncated": false, + "block": 9, + "row": 10821 + }, + { + "path": "node classification/graph_representation_LR_sage_cs2.1.py", + "sha256": "7754fcfdf130be931667403aeb64b0a71d38813018cf921f4e037f30dfc3a18d", + "language": "Python", + "lines": 222, + "truncated": false, + "block": 9, + "row": 10265 + }, + { + "path": "node classification/untitled12.py", + "sha256": "664d7351dfb84cea5ac021a451e27bd29e7b86e26af3c57f9f23c2a8e383bb9c", + "language": "Python", + "lines": 190, + "truncated": false, + "block": 9, + "row": 9915 + }, + { + "path": "node classification/untitled8.py", + "sha256": "e98726730270948b03f1b0d34407ece1bd698eec521d3c62286ffcc4535d335b", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6458 + }, + { + "path": "protein protein interaction/concat embeddings/build_combined_graph.py", + "sha256": "5d1775b6fa7a3e3cfcde04100a0113200f5839ae750d7f03c6b138e7cd0b6664", + "language": "Python", + "lines": 157, + "truncated": false, + "block": 9, + "row": 9191 + }, + { + "path": "protein protein interaction/concat embeddings/build_combined_graph_part2.py", + "sha256": "b141cd9a437410a882671b3c2d0e39d6a9bbb09cfffc43b8bf1004aa1a80e3e0", + "language": "Python", + "lines": 190, + "truncated": false, + "block": 9, + "row": 10022 + }, + { + "path": "protein protein interaction/concat embeddings/concat_embeddings_robustness/inference_bs1.2.py", + "sha256": "9e17daceead71911f5d29b989caae227a7f86333fbba41fd7fe43a3f1cf7f8ce", + "language": "Python", + "lines": 724, + "truncated": false, + "block": 9, + "row": 12142 + }, + { + "path": "protein protein interaction/concat embeddings/concat_embeddings_robustness/model.py", + "sha256": "f3a7f2543fb9e2895162976069f60eb21276113a8c30a788f8913852ee8d33a3", + "language": "Python", + "lines": 866, + "truncated": false, + "block": 9, + "row": 12310 + }, + { + "path": "protein protein interaction/concat embeddings/main_concat.py", + "sha256": "054c6306ed2baaf80c6bec89bad269ec74a563a0ae2e0ae9bad3ae0f7f47dc54", + "language": "Python", + "lines": 729, + "truncated": false, + "block": 9, + "row": 12127 + }, + { + "path": "protein protein interaction/concat embeddings/model.py", + "sha256": "0288ec2a8fa015ce5d2315c34a52b1b687a1e8d5f7a554444648222ce99f26d6", + "language": "Python", + "lines": 865, + "truncated": false, + "block": 9, + "row": 12309 + }, + { + "path": "protein protein interaction/mcnemar_test/compute_mcnemar1.3.py", + "sha256": "d73be5971979dad05dcb2310212596cbc5f2b5b1c69be2ca7116541290e4f657", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 9239 + }, + { + "path": "protein protein interaction/mcnemar_test/inference_mcnemar.py", + "sha256": "6dc9c5e7a33f1427778802fa27edfafa5a931da2e0c50310535af459928c2e05", + "language": "Python", + "lines": 629, + "truncated": false, + "block": 9, + "row": 12009 + }, + { + "path": "protein protein interaction/with alphafold/build_alphagold_graph.py", + "sha256": "91c5c05d07fc4ad946c324598ed1b6c6507139cd1eba3130eca12e487bcf22a0", + "language": "Python", + "lines": 220, + "truncated": false, + "block": 9, + "row": 10341 + }, + { + "path": "protein protein interaction/with alphafold/inference_bs.py", + "sha256": "4d231bc83d433b92b1eafd34d41e60dbc52067e32795f7decbe38d59b3fc0942", + "language": "Python", + "lines": 685, + "truncated": false, + "block": 9, + "row": 12122 + }, + { + "path": "protein protein interaction/with alphafold/main.py", + "sha256": "45e8b6e48fd90be41b4f093d71f15250029942d5db28a92be3099b62abf94cdf", + "language": "Python", + "lines": 653, + "truncated": false, + "block": 9, + "row": 12050 + }, + { + "path": "protein protein interaction/with alphafold/model.py", + "sha256": "5e24318238e1a26676c153c46e0cd8129bf0dd10e97f2f24d509cefc8e109d52", + "language": "Python", + "lines": 844, + "truncated": false, + "block": 9, + "row": 12251 + }, + { + "path": "protein protein interaction/with bioembedding/build_bioembed_graph.py", + "sha256": "5c6455938ee463356aea0d5763158fd1e9f5d1e02f374f2c2495e8ee657e5935", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 9, + "row": 9738 + }, + { + "path": "protein protein interaction/with bioembedding/inference_bs.py", + "sha256": "f7d9bcf3eae981b303285220ae84d69f4c5d4591345f28f2f0220da0190953a2", + "language": "Python", + "lines": 684, + "truncated": false, + "block": 9, + "row": 12123 + }, + { + "path": "protein protein interaction/with bioembedding/main.py", + "sha256": "9cfbc9dc6337a858639b0f7003750c3971b143386e0f941b938cd3d7f966c904", + "language": "Python", + "lines": 611, + "truncated": false, + "block": 9, + "row": 11978 + }, + { + "path": "protein protein interaction/with bioembedding/model.py", + "sha256": "f3a7f2543fb9e2895162976069f60eb21276113a8c30a788f8913852ee8d33a3", + "language": "Python", + "lines": 866, + "truncated": false, + "block": 9, + "row": 12310 + }, + { + "path": "protein protein interaction/with esm/build_esm_graph.py", + "sha256": "15c31b848b69822e1f7334626d333d57a19d29d8dc32f9a96c444c750dfd2c8d", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 9, + "row": 9758 + }, + { + "path": "protein protein interaction/with esm/inference_bs.py", + "sha256": "26c2916202e48240d5d6bb19f520a444e6c08c522c5caf86ff8c7de2caed88c0", + "language": "Python", + "lines": 686, + "truncated": false, + "block": 9, + "row": 12121 + }, + { + "path": "protein protein interaction/with esm/main.py", + "sha256": "eb68b6b718efee8a91dd2035e3225986586c3f66f7315d9e5bd022ea644df7ca", + "language": "Python", + "lines": 647, + "truncated": false, + "block": 9, + "row": 12042 + }, + { + "path": "protein protein interaction/with esm/model.py", + "sha256": "0288ec2a8fa015ce5d2315c34a52b1b687a1e8d5f7a554444648222ce99f26d6", + "language": "Python", + "lines": 865, + "truncated": false, + "block": 9, + "row": 12309 + }, + { + "path": "protein protein interaction/with protvec/build_protevec_embed_graph.py", + "sha256": "f060abd6783a5a44f089794829a27c84ea0b37565d78b031190cd1835a22f649", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 9, + "row": 9729 + }, + { + "path": "protein protein interaction/with protvec/inference_bs.py", + "sha256": "30247987abc6540a40c433cc6dec8af40ee2a0da25f17f99075819d294ca1441", + "language": "Python", + "lines": 697, + "truncated": false, + "block": 9, + "row": 12130 + }, + { + "path": "protein protein interaction/with protvec/main.py", + "sha256": "c24754bad80f2abbb21ff43140611c2e652ce20fbe1f16920071005a1f0715b9", + "language": "Python", + "lines": 645, + "truncated": false, + "block": 9, + "row": 12035 + }, + { + "path": "protein protein interaction/with protvec/model.py", + "sha256": "0288ec2a8fa015ce5d2315c34a52b1b687a1e8d5f7a554444648222ce99f26d6", + "language": "Python", + "lines": 865, + "truncated": false, + "block": 9, + "row": 12309 + }, + { + "path": "protvec/get_protvec_embeddings1.2.py", + "sha256": "eb4c9209059de57cc33ab81e5480b660e8a1eb0d9d409ad2499473eeaf962ec1", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9165 + }, + { + "path": "tutorial/tutorial_clustering.py", + "sha256": "a383f1ceff2c2196de35eab370080b776e7440c7d6caff45ea042a7e89ac0c4d", + "language": "Python", + "lines": 234, + "truncated": false, + "block": 9, + "row": 10723 + } + ] +} \ No newline at end of file diff --git a/manifests/71/github.com__zaiedhussein__flat-minima-breast-ultrasound.json b/manifests/71/github.com__zaiedhussein__flat-minima-breast-ultrasound.json new file mode 100644 index 0000000000000000000000000000000000000000..17e58ddc431874278e79afdfe4100fc233e377b5 --- /dev/null +++ b/manifests/71/github.com__zaiedhussein__flat-minima-breast-ultrasound.json @@ -0,0 +1,120 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/zaiedhussein/flat-minima-breast-ultrasound", + "url": "https://github.com/zaiedhussein/flat-minima-breast-ultrasound", + "host": "github.com", + "commit": "90a037d67a32c5f8ee1c6abe1e494b16faa50297", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "b582dd68ef1b6859e37d101894c72446a8837457b88fde59fd6b51b8a614ebfd", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2851 + }, + { + "path": "README.md", + "sha256": "8a5c59cbb3d164d5d377c9b52ce879e55d83938c64e90821c53b3686217bc804", + "language": "Text", + "lines": 251, + "truncated": false, + "block": 9, + "row": 14694 + }, + { + "path": "ablation.py", + "sha256": "98f9b9207acd0ad16f18aa71a5bb3349f6ed1e46933797f28ff6b4b5bdfa3adf", + "language": "Python", + "lines": 702, + "truncated": false, + "block": 9, + "row": 12175 + }, + { + "path": "configs/__init__.py", + "sha256": "0d4d75334d101bfce7ccc4eef1991feb1fcfda7fd609c0a830618c8310825877", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6116 + }, + { + "path": "sam.py", + "sha256": "6a69b469bf77e80f529472cd40608699a690554c5fe173afbd4e24cba886c750", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 9, + "row": 9190 + }, + { + "path": "train_adam.py", + "sha256": "58eb9d6144c6dd16605208834035ae03802d288570daaee88f6d3381437e7e67", + "language": "Python", + "lines": 508, + "truncated": false, + "block": 9, + "row": 11844 + }, + { + "path": "train_sgd.py", + "sha256": "2b1e00813b52908c659e8971647612fcb86a29fd568a22b67bd148e14dba8aef", + "language": "Python", + "lines": 504, + "truncated": false, + "block": 9, + "row": 11850 + }, + { + "path": "utils/__init__.py", + "sha256": "3aad373b8b699c03223a2ffa2b63fa069f198c94964f66ef36f58473ad405345", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6120 + }, + { + "path": "utils/model_zoo.py", + "sha256": "777d213910f91af94f261539f38efb93d1516f8b61bfa4eefcd216dccfab40ee", + "language": "Python", + "lines": 237, + "truncated": false, + "block": 9, + "row": 10838 + }, + { + "path": "utils/plotting.py", + "sha256": "aff480cfdb4ca1c1262752d15b521594818c61c688be73bbe5f98df89949e298", + "language": "Python", + "lines": 315, + "truncated": false, + "block": 9, + "row": 11264 + }, + { + "path": "utils/sharpness.py", + "sha256": "4c6bae776a91d391ed568c28ee6857c79176cfeffa1edf7df60b820673874c55", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 8730 + }, + { + "path": "utils/training.py", + "sha256": "2674634f7f26775107527bf4a81b2859fb42a800d15278c0cfa57dde7d2038d4", + "language": "Python", + "lines": 198, + "truncated": false, + "block": 9, + "row": 9863 + } + ] +} \ No newline at end of file diff --git a/manifests/71/zenodo__19008090.json b/manifests/71/zenodo__19008090.json new file mode 100644 index 0000000000000000000000000000000000000000..0574c479709f5c3fa0c450cd2c1a30f8d90327b5 --- /dev/null +++ b/manifests/71/zenodo__19008090.json @@ -0,0 +1,1200 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19008090", + "url": "https://doi.org/10.5281/zenodo.19008090", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "93564699031514228a68630e80f34a9b5c2ab042bb990d972b184a33715ae114", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2858 + }, + { + "path": "README.md", + "sha256": "ad4cb72ee9baeb53561f953da07de689a6318a9bb59dc871a25b5d84ca677c66", + "language": "Text", + "lines": 366, + "truncated": false, + "block": 9, + "row": 14735 + }, + { + "path": "alphafold/Representations_AlphaFold2_v3.23.py", + "sha256": "4d74f140d0ca9862971f6496641e8abae930b1f936ea1a88970513dd05171aca", + "language": "Python", + "lines": 265, + "truncated": false, + "block": 9, + "row": 10771 + }, + { + "path": "alphafold/alphafold/__init__.py", + "sha256": "81d285f77e444308aaf387bf06ecbbf7ccca4461d62db3e9ad9fe462393e5d82", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 3, + "row": 18569 + }, + { + "path": "alphafold/alphafold/common/__init__.py", + "sha256": "144c001f817a11c018cb618354e7fb67e52cd76d01b74667b02fc0657a5874e7", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 3, + "row": 18556 + }, + { + "path": "alphafold/alphafold/common/confidence.py", + "sha256": "87e96713aa98e060a388200d4a96e9cda70e1cace1c81272dfc8b8f6f38235a8", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 6, + "row": 42222 + }, + { + "path": "alphafold/alphafold/common/protein.py", + "sha256": "7236d004959279b427cab11502d582d1540ea1d11d57c607a7969499ec7bfbf2", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 9, + "row": 10325 + }, + { + "path": "alphafold/alphafold/common/protein_test.py", + "sha256": "9101b8d92a33b20c974c19eaae69d78a80df49a20d1c6d738e3a58594b1d24dc", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8817 + }, + { + "path": "alphafold/alphafold/common/residue_constants.py", + "sha256": "bee473983562478da9bb9caee20b7e0bfe257ec2751ddba2fc0af8ec380136e8", + "language": "Python", + "lines": 895, + "truncated": false, + "block": 9, + "row": 12326 + }, + { + "path": "alphafold/alphafold/common/residue_constants_test.py", + "sha256": "f93f3f54c2e7ed85b1d13058e5d6ac824d8f97522b79eba1c34502b0bd0287d5", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 9, + "row": 10688 + }, + { + "path": "alphafold/alphafold/data/__init__.py", + "sha256": "9fbad6d49a22e5687eba7f57058bbbbe75f6248997ca51f83cceb6071db65b1d", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 3, + "row": 18535 + }, + { + "path": "alphafold/alphafold/data/mmcif_parsing.py", + "sha256": "266db147f42c586ac9dbd2681ca8ab3ca751df633ed457419614b6762bd3cdca", + "language": "Python", + "lines": 384, + "truncated": false, + "block": 9, + "row": 11349 + }, + { + "path": "alphafold/alphafold/data/parsers.py", + "sha256": "d95186ad8ca5753cf05d8469e78479359fce412b1dd8c458e612382b2697ce6f", + "language": "Python", + "lines": 365, + "truncated": false, + "block": 9, + "row": 11225 + }, + { + "path": "alphafold/alphafold/data/pipeline.py", + "sha256": "8bc146cf477d13c2d21d181328a906e7638c27a3b993c93911c521351b8e6590", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 9, + "row": 10367 + }, + { + "path": "alphafold/alphafold/data/templates.py", + "sha256": "c0a8fd2096e051a93ae0b5056c871fce9e917c835d2a971da6bca365a06cd224", + "language": "Python", + "lines": 911, + "truncated": false, + "block": 9, + "row": 12357 + }, + { + "path": "alphafold/alphafold/data/tools/__init__.py", + "sha256": "99b6dc388add0ed76fba35e40cf36a64f17e88f5b830dd7eaee48853c92f4c31", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 3, + "row": 18544 + }, + { + "path": "alphafold/alphafold/data/tools/hhblits.py", + "sha256": "0050adebf1769e9d9773aba129308864e397c63aa075775e7291bf64bdb895c2", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 6, + "row": 42379 + }, + { + "path": "alphafold/alphafold/data/tools/hhsearch.py", + "sha256": "c20d7034bf78663a3589385627324122884fae7cc5974f45c0ed99922a9c5b54", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 6, + "row": 36171 + }, + { + "path": "alphafold/alphafold/data/tools/hmmbuild.py", + "sha256": "21861db34cf9f574009daa57c9790d7b9fd58a956c6ad66c1fcb05ea5bb06d39", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 9, + "row": 9309 + }, + { + "path": "alphafold/alphafold/data/tools/hmmsearch.py", + "sha256": "9f8491e92196d77d2f2ee3ce5c2b61dff0036f9fc2718e1f9f0d57b311573fbd", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 9, + "row": 8533 + }, + { + "path": "alphafold/alphafold/data/tools/jackhmmer.py", + "sha256": "b954372b986ad3af9871c7fe557e9cc5b323c810ebd57a5312eb54f93d38ee76", + "language": "Python", + "lines": 198, + "truncated": false, + "block": 6, + "row": 45471 + }, + { + "path": "alphafold/alphafold/data/tools/kalign.py", + "sha256": "b3689c0799e82eb092cf43fc59326fe6a4184d8a0b7c6fcc7867f49f42a50778", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 6, + "row": 37114 + }, + { + "path": "alphafold/alphafold/data/tools/utils.py", + "sha256": "e64ec392a2be1c706afee0eee41cfbe39c2b7fa1dad864c364fbe3be3689cfdc", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 3, + "row": 19245 + }, + { + "path": "alphafold/alphafold/model/__init__.py", + "sha256": "a237ba59c7c0a012e927739e8b3e984b283f696af466dddab2d920c3aac087be", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 3, + "row": 18510 + }, + { + "path": "alphafold/alphafold/model/all_atom.py", + "sha256": "d78d952aa8954ea5332102b4bec9b6862f95aaa21b401e251de6f5ff8f35bb78", + "language": "Python", + "lines": 1143, + "truncated": false, + "block": 9, + "row": 12468 + }, + { + "path": "alphafold/alphafold/model/all_atom_test.py", + "sha256": "a23a858d058d0a76a4f711e5623d42fed0f7b0f8c3a8f13474ce0fe32afe032d", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9353 + }, + { + "path": "alphafold/alphafold/model/common_modules.py", + "sha256": "2b92e47a8251c1270bd9bfca448ccaf5b08ecfe597d4a11a70cb64ba9e52678e", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 6, + "row": 35274 + }, + { + "path": "alphafold/alphafold/model/config.py", + "sha256": "2ab4207b1691ae159ee312d8bc63f7cbaa3bb619f6de911e0a529a32f033e696", + "language": "Python", + "lines": 403, + "truncated": false, + "block": 9, + "row": 11540 + }, + { + "path": "alphafold/alphafold/model/data.py", + "sha256": "a7cca67acd49324b012260ef49fab038baac2d80bc266b00329cfaee7855e9ee", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 9, + "row": 7341 + }, + { + "path": "alphafold/alphafold/model/features.py", + "sha256": "54001559126618150949924983032c0708d7b1c8a7e7172899d65a9a78045b82", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 8922 + }, + { + "path": "alphafold/alphafold/model/folding.py", + "sha256": "c28ddb70dcdb575db377e808b032d5d8badcba7a2474523bbd11dbc8b3d860cb", + "language": "Python", + "lines": 1011, + "truncated": false, + "block": 9, + "row": 12360 + }, + { + "path": "alphafold/alphafold/model/layer_stack.py", + "sha256": "0fd8863656fa6c9b069569343eed823977cfcc87b5a3f8e12ae8e54a2451c4db", + "language": "Python", + "lines": 274, + "truncated": false, + "block": 3, + "row": 25025 + }, + { + "path": "alphafold/alphafold/model/layer_stack_test.py", + "sha256": "373db6a698a7f0c07baf6bfb94f123db9c36526bfc725b1ef608f4fd5690b6d9", + "language": "Python", + "lines": 336, + "truncated": false, + "block": 9, + "row": 10871 + }, + { + "path": "alphafold/alphafold/model/lddt.py", + "sha256": "22ebd462ad0493489fb0813fbb5392c4b26cca8807598c8ca12cf10e2ffa991d", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 3, + "row": 21737 + }, + { + "path": "alphafold/alphafold/model/lddt_test.py", + "sha256": "3f083a6c29c4d53499c1883418edec72d481f9593813b3e917c6b5feaf0f9974", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8150 + }, + { + "path": "alphafold/alphafold/model/mapping.py", + "sha256": "5ca97a20edf71ccc3d616a7818f507d245db65cc4d7b9287bf8d110cf5baf19b", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 9, + "row": 10379 + }, + { + "path": "alphafold/alphafold/model/model.py", + "sha256": "0148115146a1c709ee64f573bb0968a126aa6c940d9fb87b86a71790eeda0db5", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 9, + "row": 9537 + }, + { + "path": "alphafold/alphafold/model/modules.py", + "sha256": "ba7bc0d68e6f0cfdee75a49926993b405f82dc49e7cb982b826de445deb76762", + "language": "Python", + "lines": 2096, + "truncated": false, + "block": 9, + "row": 12582 + }, + { + "path": "alphafold/alphafold/model/prng.py", + "sha256": "09e62b8b2c24a2aa41704c0b474bfa45cc1b5a9121bf9d883232278de25f2a33", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 3, + "row": 20143 + }, + { + "path": "alphafold/alphafold/model/prng_test.py", + "sha256": "91e8079e7b82a2fcad308a1b47b9a0bf2aa941cdea1eb84c8b45e8f0c398baac", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7294 + }, + { + "path": "alphafold/alphafold/model/quat_affine.py", + "sha256": "dfc1d3e3df0e1966ed361f4dbaf9fc59fd525a8458bb7c4187c9c70d168ef749", + "language": "Python", + "lines": 459, + "truncated": false, + "block": 3, + "row": 26768 + }, + { + "path": "alphafold/alphafold/model/quat_affine_test.py", + "sha256": "376e50b603966ef2be540ae9a457fcc3b528e6edadf5e269bd244045aa6070bf", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 9477 + }, + { + "path": "alphafold/alphafold/model/r3.py", + "sha256": "e84335397dac31e2877865d839c566d25ee938819f37dd795f7c1bc606363a82", + "language": "Python", + "lines": 322, + "truncated": false, + "block": 9, + "row": 10947 + }, + { + "path": "alphafold/alphafold/model/tf/__init__.py", + "sha256": "7ee47be79cc30b61cf7111de0d29f6fa5e15737c741145502e998ff7b657ba05", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 3, + "row": 18534 + }, + { + "path": "alphafold/alphafold/model/tf/data_transforms.py", + "sha256": "e706d117176fdfa753183e1ed0db4e74819fe5a904a0f61be49c90ce0589f70c", + "language": "Python", + "lines": 626, + "truncated": false, + "block": 9, + "row": 11927 + }, + { + "path": "alphafold/alphafold/model/tf/input_pipeline.py", + "sha256": "1cf64535cee930df2da1fd6f833bf7324dab8e39c9c2e3e426925513b41e5b46", + "language": "Python", + "lines": 166, + "truncated": false, + "block": 9, + "row": 9603 + }, + { + "path": "alphafold/alphafold/model/tf/protein_features.py", + "sha256": "aa8eb82c54317d559b554398a759fea23532e2e6d7ad701f85b889cdf5ba919e", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 9486 + }, + { + "path": "alphafold/alphafold/model/tf/protein_features_test.py", + "sha256": "2e27df5c206a0b586864d7dbaf255131dff9c466463f4d7b21d54365bc8f2217", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7730 + }, + { + "path": "alphafold/alphafold/model/tf/proteins_dataset.py", + "sha256": "9b97dceb7f8b028d8640f6168f381e1798c69b29109754bc7eac17876f923a6d", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 9, + "row": 9952 + }, + { + "path": "alphafold/alphafold/model/tf/shape_helpers.py", + "sha256": "0bdb468834e3f022d362c08d79f6f2a8f472120b0b660d3cd619d97721a84de1", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 3, + "row": 19463 + }, + { + "path": "alphafold/alphafold/model/tf/shape_helpers_test.py", + "sha256": "fa424062a7fead354ddd8fc71860f1295facfbd6b4c2682e9aa499f03c58970c", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7326 + }, + { + "path": "alphafold/alphafold/model/tf/shape_placeholders.py", + "sha256": "91457589ca3a16036ecd51b9674f8c3933492841be81f02eb9ddcfb206df1c87", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 3, + "row": 18759 + }, + { + "path": "alphafold/alphafold/model/tf/utils.py", + "sha256": "cbee68e094dd27c7cd5f1baf79daa4883af7a50a9ba2f6d190e183281804909a", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 3, + "row": 19308 + }, + { + "path": "alphafold/alphafold/model/utils.py", + "sha256": "6e6ef26bfa03521dd9c225306869911538542696c6302743cab8c0b5c2ee032b", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 6, + "row": 33441 + }, + { + "path": "alphafold/alphafold/relax/__init__.py", + "sha256": "0b52f881c1ab7a485ad2fc581d2c42c486c54f6b5ec00a46b7f3ceed0e786e3b", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 3, + "row": 18511 + }, + { + "path": "alphafold/alphafold/relax/amber_minimize.py", + "sha256": "ca0d03bdc42a1f2b58c8a11e54f4e12ae8c1fdb2a8b0f79f71516ec37328f46f", + "language": "Python", + "lines": 547, + "truncated": false, + "block": 9, + "row": 11882 + }, + { + "path": "alphafold/alphafold/relax/amber_minimize_test.py", + "sha256": "bb96646d2c1e7cdedef7f71b8a1e6bf57806e64af35aaad0e29a3be62c9d246d", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 9, + "row": 9178 + }, + { + "path": "alphafold/alphafold/relax/cleanup.py", + "sha256": "7739a3f0a24061579c5f9720d60163d7b67b09a246c802e217340e2f22a5c9fd", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 3, + "row": 22823 + }, + { + "path": "alphafold/alphafold/relax/cleanup_test.py", + "sha256": "97fa75b6de8da99c45195e37273be66f670a53ac3904a410546408655991f5e6", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 9, + "row": 9894 + }, + { + "path": "alphafold/alphafold/relax/relax.py", + "sha256": "401c1ba53a3f573ef7cbc2e208a18d0627239001cd8205d1d13352c5f382e850", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 9, + "row": 8646 + }, + { + "path": "alphafold/alphafold/relax/relax_test.py", + "sha256": "65974003bf5a3bf7e931c7155ada55637e75ff3f7af65c394375090ecb12a44e", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 8959 + }, + { + "path": "alphafold/alphafold/relax/utils.py", + "sha256": "f862100fe8a91f761c7fbf6fb7c370ffca95a8323f496c275dc2168ce4d93bd1", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8503 + }, + { + "path": "alphafold/alphafold/relax/utils_test.py", + "sha256": "5dc8dd52b9778614dd4b28699675a4a92b2bcac526357d54f8d16ccc3406ced3", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7908 + }, + { + "path": "alphafold/alphafold_/Representations_AlphaFold2PredictStructure.ipynb", + "sha256": "035aa9448405e1dd0926f0fdd0c6e2d95e31533f3f1f4cb42dedcccd9303ee42", + "language": "Jupyter", + "lines": 564, + "truncated": false, + "block": 9, + "row": 2651 + }, + { + "path": "alphafold/alphafold_/Representations_AlphaFold2_v3.ipynb", + "sha256": "2bfaad20af947b1aef3fbbc82c6e2bca78ea25aec124b2edb8ab73b5e17d7655", + "language": "Jupyter", + "lines": 812, + "truncated": false, + "block": 9, + "row": 2703 + }, + { + "path": "alphafold/alphafold_/docker/run_docker.py", + "sha256": "a5470f8d2561fe4aa2b1d78f42dcd791131c3883f7976cf0f37fb0e7ca80c2b5", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 9, + "row": 10193 + }, + { + "path": "alphafold/alphafold_/notebooks/AlphaFold.ipynb", + "sha256": "42d5b0cbc397b1ade4b740784ebc48ca20c9df62d32df9e104e418c8a396da65", + "language": "Jupyter", + "lines": 592, + "truncated": false, + "block": 9, + "row": 2680 + }, + { + "path": "alphafold/alphafold_/run_alphafold.py", + "sha256": "ef1f2530889aa0a56ebb17221cbd3f22b68a112e19cedbe56cf5f5f52798510b", + "language": "Python", + "lines": 303, + "truncated": false, + "block": 9, + "row": 11128 + }, + { + "path": "alphafold/alphafold_/run_alphafold_test.py", + "sha256": "cb956c2b45815fe69498755194dc5aad6bba49ccfac00f678b48d41ea60fe360", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 9, + "row": 8184 + }, + { + "path": "alphafold/alphafold_/scripts/download_all_data.sh", + "sha256": "354e951abfbca0fc84647dc3451bdd80a065c43b771ab06e0d9d286b55f5c345", + "language": "Shell", + "lines": 68, + "truncated": false, + "block": 9, + "row": 14260 + }, + { + "path": "alphafold/alphafold_/scripts/download_alphafold_params.sh", + "sha256": "4f50afd146e9415cce585bc6c3c125ee1602f4ba40f8199bc03caf329a9b9bc7", + "language": "Shell", + "lines": 41, + "truncated": false, + "block": 8, + "row": 8008 + }, + { + "path": "alphafold/alphafold_/scripts/download_bfd.sh", + "sha256": "4617a9385a6d8eeb7533858214cb5370c1ab920e18097683c30eca703f1155d6", + "language": "Shell", + "lines": 43, + "truncated": false, + "block": 8, + "row": 8138 + }, + { + "path": "alphafold/alphafold_/scripts/download_mgnify.sh", + "sha256": "0e712b1437d2ecd9505f06845129bedd666bcf09e3e748028100cb2514188c80", + "language": "Shell", + "lines": 43, + "truncated": false, + "block": 8, + "row": 8034 + }, + { + "path": "alphafold/alphafold_/scripts/download_pdb70.sh", + "sha256": "2f65a88055e3b1745b4df4b5de1f2ab8be28f7a671f9e210be56ce4b9a907b8c", + "language": "Shell", + "lines": 41, + "truncated": false, + "block": 8, + "row": 8019 + }, + { + "path": "alphafold/alphafold_/scripts/download_pdb_mmcif.sh", + "sha256": "c59261c04e1792e6eb0c0c14a9177f54d26c8b0546e2aabd51a8d22feeac1843", + "language": "Shell", + "lines": 61, + "truncated": false, + "block": 8, + "row": 8401 + }, + { + "path": "alphafold/alphafold_/scripts/download_small_bfd.sh", + "sha256": "2dc031ba594e86ee72ee326793cda854c9d207b0a0405a39729717eea89dbab2", + "language": "Shell", + "lines": 41, + "truncated": false, + "block": 8, + "row": 7972 + }, + { + "path": "alphafold/alphafold_/scripts/download_uniclust30.sh", + "sha256": "8aceaecf895082e8742a2d5877fadd0d09bdeb07cfd4fb4666382b0c90828e4c", + "language": "Shell", + "lines": 43, + "truncated": false, + "block": 8, + "row": 8129 + }, + { + "path": "alphafold/alphafold_/scripts/download_uniref90.sh", + "sha256": "8815c7af651777e90372701e2939f8b6343f097fd04ae26a777828af1a7a2e16", + "language": "Shell", + "lines": 41, + "truncated": false, + "block": 8, + "row": 7946 + }, + { + "path": "alphafold/alphafold_/setup.py", + "sha256": "9abaa3f7771f7ada3370c48cc49d72f84b522918a46e6d50de9bc2e802e7bb58", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 6, + "row": 31005 + }, + { + "path": "alphafold/eppi_to_alphafold_df_conversion.py", + "sha256": "976206d905920c313bb4cce58d92dcaa11d51a15433829653c26fa38d6406cab", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 8683 + }, + { + "path": "alphafold/my_functions.py", + "sha256": "30a781fc51ac8a7e5926efa080d13fa67bec6ba9aaec15f154e646ac8b83c31f", + "language": "Python", + "lines": 310, + "truncated": false, + "block": 9, + "row": 10990 + }, + { + "path": "alphafold/run_alphafold.sh", + "sha256": "123051c7ed4f0c33acd783df039a3d8429af357effb4d87251d3a04948ab7f71", + "language": "Shell", + "lines": 110, + "truncated": false, + "block": 9, + "row": 14297 + }, + { + "path": "alphafold/running instructions.py", + "sha256": "aed842e0c13be9578fbf860407ba65ed5ebaf315c9aa2cadf84e29bc02b0a69c", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6843 + }, + { + "path": "alphafold/setup_environment.sh", + "sha256": "abb3c68ddead1a06dd00b853b2994ae960c16eff931c141265f84a940f251086", + "language": "Shell", + "lines": 63, + "truncated": false, + "block": 9, + "row": 14261 + }, + { + "path": "alphafold/untitled0.py", + "sha256": "948705f1fb10413b4ca3fe63b50df200de0c54b075196c784cec799654cd3342", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7567 + }, + { + "path": "alphafold/untitled2.py", + "sha256": "c88539ed7a1d112a90a2a8cd7efcb32e150018039eea3df01ecf6ea63631c6ac", + "language": "Python", + "lines": 835, + "truncated": false, + "block": 9, + "row": 12230 + }, + { + "path": "alphafold/untitled3.py", + "sha256": "691fc0c14a3cf62a5125067c9d4abf1f09991b2d31ad54979b8d9c0506eba1a8", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 9, + "row": 9157 + }, + { + "path": "bioembedding/extract_bio.py", + "sha256": "350b2fd85d05ee532cb8ad566b149be1bd3800211693c66ca506fff9761ad90d", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 9015 + }, + { + "path": "bioembedding/load bioembed.py", + "sha256": "9d68091723da6b95e9ee344d73a36a9b188b48b9d279158e00da7f821be9d0b7", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 7787 + }, + { + "path": "clustering and classification/supervised_clustering - alphafold.py", + "sha256": "c67c291cef4cfeb6ad89eef971ab8b62505e8fa05a40607865b551575e3b2eaa", + "language": "Python", + "lines": 476, + "truncated": false, + "block": 9, + "row": 11883 + }, + { + "path": "clustering and classification/supervised_clustering - bioembedding.py", + "sha256": "4be5be5a70907f6bb9c9cdbe07a5b57d2765a4e31db690f8f64c1dc8eee6b8a8", + "language": "Python", + "lines": 479, + "truncated": false, + "block": 9, + "row": 11891 + }, + { + "path": "clustering and classification/supervised_clustering - esm.py", + "sha256": "8dca28ec0df00f89aa8fc3ac2ec70cf09d303ea3c5f6a599e8064b0a96644fa9", + "language": "Python", + "lines": 481, + "truncated": false, + "block": 9, + "row": 11885 + }, + { + "path": "clustering and classification/supervised_clustering - protvec.py", + "sha256": "422e183205e5d93d72da3f8acb49a096a20ff9f80c168060b17ac690b35b7530", + "language": "Python", + "lines": 496, + "truncated": false, + "block": 9, + "row": 11938 + }, + { + "path": "clustering and classification/unsupervised_clustering_and downstream_classification_Bio.py", + "sha256": "b7a3ed87dbde2bd28a12ddbbc8da5871162296c36802207e66530cfebd801195", + "language": "Python", + "lines": 504, + "truncated": false, + "block": 9, + "row": 11951 + }, + { + "path": "clustering and classification/unsupervised_clustering_and downstream_classification_ESM.py", + "sha256": "477989fefc2375d17dd1ba376ef2bb6bcadcc0047c352046a1220f5e765a8eea", + "language": "Python", + "lines": 505, + "truncated": false, + "block": 9, + "row": 11948 + }, + { + "path": "clustering and classification/unsupervised_clustering_and downstream_classification_Protvec.py", + "sha256": "f8df527ec258e39b10baa91241e421be98c00809bb084718cf16f9512e3542f5", + "language": "Python", + "lines": 520, + "truncated": false, + "block": 9, + "row": 11977 + }, + { + "path": "clustering and classification/unsupervised_clustering_and downstream_classification_alphafold.py", + "sha256": "a8612f7f65896eff041e1b8e2809eb86b140c42305a65f0bfa2dca72869a86d2", + "language": "Python", + "lines": 504, + "truncated": false, + "block": 9, + "row": 11944 + }, + { + "path": "download_dpeb_from_s3_bucket.ipynb", + "sha256": "727999a4bffab23a3d0216b9d8c54a790d7c9f8a1f03b859bf5bcbe3bc0089a8", + "language": "Jupyter", + "lines": 128, + "truncated": false, + "block": 9, + "row": 2289 + }, + { + "path": "esm/esmfold2_embeddings.py", + "sha256": "7e8bcde8b462ff0674ffec812ef127a8b078203bae2c4a603e9e0ea68c1b45bf", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 8923 + }, + { + "path": "esm/get_esm_embeddings.py", + "sha256": "3367ff4f6ab3568d6a525c9682dc2cb4e08ebf73028ba2b5cb01a9ac745840bf", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 9, + "row": 9272 + }, + { + "path": "node classification/clustering1.1.py", + "sha256": "60ebbe5e43bb1f41f732b5b4ce32d1e52c72ef2084a84b0b2adf1e4a8ff49fcd", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 8024 + }, + { + "path": "node classification/console_outputs/final result.py", + "sha256": "4cca04371bd84ab2d35b5ff5b05c541f86d44b1a3d3e10b32f6cf81ef7a3681e", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 6995 + }, + { + "path": "node classification/get_enzymes.py", + "sha256": "cb4cca398a4bd0257e3b98823b673a65160777128cef768af480fb6574c08bb5", + "language": "Python", + "lines": 310, + "truncated": false, + "block": 9, + "row": 10821 + }, + { + "path": "node classification/graph_representation_LR_sage_cs2.1.py", + "sha256": "7754fcfdf130be931667403aeb64b0a71d38813018cf921f4e037f30dfc3a18d", + "language": "Python", + "lines": 222, + "truncated": false, + "block": 9, + "row": 10265 + }, + { + "path": "node classification/untitled12.py", + "sha256": "664d7351dfb84cea5ac021a451e27bd29e7b86e26af3c57f9f23c2a8e383bb9c", + "language": "Python", + "lines": 190, + "truncated": false, + "block": 9, + "row": 9915 + }, + { + "path": "node classification/untitled8.py", + "sha256": "e98726730270948b03f1b0d34407ece1bd698eec521d3c62286ffcc4535d335b", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6458 + }, + { + "path": "protein protein interaction/concat embeddings/build_combined_graph.py", + "sha256": "5d1775b6fa7a3e3cfcde04100a0113200f5839ae750d7f03c6b138e7cd0b6664", + "language": "Python", + "lines": 157, + "truncated": false, + "block": 9, + "row": 9191 + }, + { + "path": "protein protein interaction/concat embeddings/build_combined_graph_part2.py", + "sha256": "b141cd9a437410a882671b3c2d0e39d6a9bbb09cfffc43b8bf1004aa1a80e3e0", + "language": "Python", + "lines": 190, + "truncated": false, + "block": 9, + "row": 10022 + }, + { + "path": "protein protein interaction/concat embeddings/concat_embeddings_robustness/inference_bs1.2.py", + "sha256": "9e17daceead71911f5d29b989caae227a7f86333fbba41fd7fe43a3f1cf7f8ce", + "language": "Python", + "lines": 724, + "truncated": false, + "block": 9, + "row": 12142 + }, + { + "path": "protein protein interaction/concat embeddings/concat_embeddings_robustness/model.py", + "sha256": "f3a7f2543fb9e2895162976069f60eb21276113a8c30a788f8913852ee8d33a3", + "language": "Python", + "lines": 866, + "truncated": false, + "block": 9, + "row": 12310 + }, + { + "path": "protein protein interaction/concat embeddings/main_concat.py", + "sha256": "054c6306ed2baaf80c6bec89bad269ec74a563a0ae2e0ae9bad3ae0f7f47dc54", + "language": "Python", + "lines": 729, + "truncated": false, + "block": 9, + "row": 12127 + }, + { + "path": "protein protein interaction/concat embeddings/model.py", + "sha256": "0288ec2a8fa015ce5d2315c34a52b1b687a1e8d5f7a554444648222ce99f26d6", + "language": "Python", + "lines": 865, + "truncated": false, + "block": 9, + "row": 12309 + }, + { + "path": "protein protein interaction/mcnemar_test/compute_mcnemar1.3.py", + "sha256": "d73be5971979dad05dcb2310212596cbc5f2b5b1c69be2ca7116541290e4f657", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 9239 + }, + { + "path": "protein protein interaction/mcnemar_test/inference_mcnemar.py", + "sha256": "6dc9c5e7a33f1427778802fa27edfafa5a931da2e0c50310535af459928c2e05", + "language": "Python", + "lines": 629, + "truncated": false, + "block": 9, + "row": 12009 + }, + { + "path": "protein protein interaction/with alphafold/build_alphagold_graph.py", + "sha256": "91c5c05d07fc4ad946c324598ed1b6c6507139cd1eba3130eca12e487bcf22a0", + "language": "Python", + "lines": 220, + "truncated": false, + "block": 9, + "row": 10341 + }, + { + "path": "protein protein interaction/with alphafold/inference_bs.py", + "sha256": "4d231bc83d433b92b1eafd34d41e60dbc52067e32795f7decbe38d59b3fc0942", + "language": "Python", + "lines": 685, + "truncated": false, + "block": 9, + "row": 12122 + }, + { + "path": "protein protein interaction/with alphafold/main.py", + "sha256": "45e8b6e48fd90be41b4f093d71f15250029942d5db28a92be3099b62abf94cdf", + "language": "Python", + "lines": 653, + "truncated": false, + "block": 9, + "row": 12050 + }, + { + "path": "protein protein interaction/with alphafold/model.py", + "sha256": "5e24318238e1a26676c153c46e0cd8129bf0dd10e97f2f24d509cefc8e109d52", + "language": "Python", + "lines": 844, + "truncated": false, + "block": 9, + "row": 12251 + }, + { + "path": "protein protein interaction/with bioembedding/build_bioembed_graph.py", + "sha256": "5c6455938ee463356aea0d5763158fd1e9f5d1e02f374f2c2495e8ee657e5935", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 9, + "row": 9738 + }, + { + "path": "protein protein interaction/with bioembedding/inference_bs.py", + "sha256": "f7d9bcf3eae981b303285220ae84d69f4c5d4591345f28f2f0220da0190953a2", + "language": "Python", + "lines": 684, + "truncated": false, + "block": 9, + "row": 12123 + }, + { + "path": "protein protein interaction/with bioembedding/main.py", + "sha256": "9cfbc9dc6337a858639b0f7003750c3971b143386e0f941b938cd3d7f966c904", + "language": "Python", + "lines": 611, + "truncated": false, + "block": 9, + "row": 11978 + }, + { + "path": "protein protein interaction/with bioembedding/model.py", + "sha256": "f3a7f2543fb9e2895162976069f60eb21276113a8c30a788f8913852ee8d33a3", + "language": "Python", + "lines": 866, + "truncated": false, + "block": 9, + "row": 12310 + }, + { + "path": "protein protein interaction/with esm/build_esm_graph.py", + "sha256": "15c31b848b69822e1f7334626d333d57a19d29d8dc32f9a96c444c750dfd2c8d", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 9, + "row": 9758 + }, + { + "path": "protein protein interaction/with esm/inference_bs.py", + "sha256": "26c2916202e48240d5d6bb19f520a444e6c08c522c5caf86ff8c7de2caed88c0", + "language": "Python", + "lines": 686, + "truncated": false, + "block": 9, + "row": 12121 + }, + { + "path": "protein protein interaction/with esm/main.py", + "sha256": "eb68b6b718efee8a91dd2035e3225986586c3f66f7315d9e5bd022ea644df7ca", + "language": "Python", + "lines": 647, + "truncated": false, + "block": 9, + "row": 12042 + }, + { + "path": "protein protein interaction/with esm/model.py", + "sha256": "0288ec2a8fa015ce5d2315c34a52b1b687a1e8d5f7a554444648222ce99f26d6", + "language": "Python", + "lines": 865, + "truncated": false, + "block": 9, + "row": 12309 + }, + { + "path": "protein protein interaction/with protvec/build_protevec_embed_graph.py", + "sha256": "f060abd6783a5a44f089794829a27c84ea0b37565d78b031190cd1835a22f649", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 9, + "row": 9729 + }, + { + "path": "protein protein interaction/with protvec/inference_bs.py", + "sha256": "30247987abc6540a40c433cc6dec8af40ee2a0da25f17f99075819d294ca1441", + "language": "Python", + "lines": 697, + "truncated": false, + "block": 9, + "row": 12130 + }, + { + "path": "protein protein interaction/with protvec/main.py", + "sha256": "c24754bad80f2abbb21ff43140611c2e652ce20fbe1f16920071005a1f0715b9", + "language": "Python", + "lines": 645, + "truncated": false, + "block": 9, + "row": 12035 + }, + { + "path": "protein protein interaction/with protvec/model.py", + "sha256": "0288ec2a8fa015ce5d2315c34a52b1b687a1e8d5f7a554444648222ce99f26d6", + "language": "Python", + "lines": 865, + "truncated": false, + "block": 9, + "row": 12309 + }, + { + "path": "protvec/get_protvec_embeddings1.2.py", + "sha256": "eb4c9209059de57cc33ab81e5480b660e8a1eb0d9d409ad2499473eeaf962ec1", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9165 + }, + { + "path": "tutorial/tutorial_clustering.py", + "sha256": "a383f1ceff2c2196de35eab370080b776e7440c7d6caff45ea042a7e89ac0c4d", + "language": "Python", + "lines": 234, + "truncated": false, + "block": 9, + "row": 10723 + } + ] +} \ No newline at end of file diff --git a/manifests/72/figshare__29666735.json b/manifests/72/figshare__29666735.json new file mode 100644 index 0000000000000000000000000000000000000000..86d5ec6bbe3a1fe328634dd942f23efc34c227f6 --- /dev/null +++ b/manifests/72/figshare__29666735.json @@ -0,0 +1,75 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "figshare:29666735", + "url": "10.6084/M9.FIGSHARE.29666735.v3", + "host": "figshare.com", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "c72844515f4960aeedfba560e3cc2f3fe2fb6f9fecdcd2023206bff1e877f11e", + "language": "Text", + "lines": 58, + "truncated": false, + "block": 9, + "row": 14624 + }, + { + "path": "code.zip/BCI_DAT_to_EDF_converter.m", + "sha256": "53925d19bc91e4988c4201008dfc22cc6d1ff348c6a3726e19620ac8c2a6d997", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 9, + "row": 4049 + }, + { + "path": "code.zip/BCI_DAT_to_TSV_converter.m", + "sha256": "0bd456b5db18a2c88666b54e8ef336e823fa4b2c97ee4dbca8fa16b64b633ee8", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 9, + "row": 4025 + }, + { + "path": "code.zip/EEG_validation.ipynb", + "sha256": "010002695c9a7114fe35bcf5dbf5a63f60d9527991e72b96b3893de517e53130", + "language": "Jupyter", + "lines": 644, + "truncated": false, + "block": 9, + "row": 2649 + }, + { + "path": "code.zip/EMG_And_Kinematic_Validation.ipynb", + "sha256": "720867d26e855b0bfee7fe57894c9c06865e2da8fa4cafb0a37f32ecef4f3ed7", + "language": "Jupyter", + "lines": 1461, + "truncated": false, + "block": 9, + "row": 2735 + }, + { + "path": "code.zip/Group_Level_Analysis.ipynb", + "sha256": "b724b3039c24f9678eef35c60c5c839cc9c7822d8f0615756ff886b45c149306", + "language": "Jupyter", + "lines": 198, + "truncated": false, + "block": 9, + "row": 2491 + }, + { + "path": "code.zip/Run_All_Subjects_Analysis.ipynb", + "sha256": "ac624e14fb3a3aa13fc2c8005b2d12f8e7920bab09dda795b22cc5f7a5d2d3ba", + "language": "Jupyter", + "lines": 51, + "truncated": false, + "block": 9, + "row": 2213 + } + ] +} \ No newline at end of file diff --git a/manifests/72/github.com__noble-lab__twinc.json b/manifests/72/github.com__noble-lab__twinc.json new file mode 100644 index 0000000000000000000000000000000000000000..ff6729855a03168195fc5a9c0adca3a89704330b --- /dev/null +++ b/manifests/72/github.com__noble-lab__twinc.json @@ -0,0 +1,75 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/noble-lab/twinc", + "url": "https://github.com/Noble-Lab/twinc", + "host": "github.com", + "commit": "0bfabac687306e5c568d05c254b7d9ffe7044119", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "db96e67b06fdc92922a7b53e99b590adc74628d6213a9d69c5de1b47faf6704d", + "language": "License", + "lines": 201, + "truncated": false, + "block": 9, + "row": 2898 + }, + { + "path": "README.md", + "sha256": "da43431b628e9699bfba2b30c6076686bd2bf6c298cc2cb4b8f1bb0a6d2c3674", + "language": "Text", + "lines": 11, + "truncated": false, + "block": 9, + "row": 14481 + }, + { + "path": "setup.py", + "sha256": "019ce9578ed1f7defbd56c0066168197d2d0efefe25dc85906f0d383527ecb21", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7506 + }, + { + "path": "twinc/twinc_network.py", + "sha256": "857b9d78164fc9e055e6b37ff75701a36c960d8692b2b3025596b5cfbc357248", + "language": "Python", + "lines": 990, + "truncated": false, + "block": 9, + "row": 12494 + }, + { + "path": "twinc/twinc_test.py", + "sha256": "089a01712c5699675cddbba3429b349286d688364bbc9612cb1fb82aacfa365e", + "language": "Python", + "lines": 210, + "truncated": false, + "block": 9, + "row": 10304 + }, + { + "path": "twinc/twinc_train.py", + "sha256": "d34f411f292b7963c7958e1964b0089b6771f86e4ecc0e930259c6d445bf9418", + "language": "Python", + "lines": 359, + "truncated": false, + "block": 9, + "row": 11232 + }, + { + "path": "twinc/twinc_utils.py", + "sha256": "691b7008870fde529e2f90989500b5b9beb094788fb626ee6ed8553b97617695", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 9, + "row": 11024 + } + ] +} \ No newline at end of file diff --git a/manifests/72/zenodo__19108131.json b/manifests/72/zenodo__19108131.json new file mode 100644 index 0000000000000000000000000000000000000000..a0bf7f51848a6571873628f298ee7334557c7456 --- /dev/null +++ b/manifests/72/zenodo__19108131.json @@ -0,0 +1,102 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19108131", + "url": "10.5281/zenodo.19108131", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "f2e388ae97c4be6c2c71b14466a329cff064a1c56b0d7e5478a201bacc1d1a84", + "language": "Text", + "lines": 141, + "truncated": false, + "block": 9, + "row": 14593 + }, + { + "path": "scripts/00_setup.R", + "sha256": "e372b7126aa32f667c5f00252efb815a3cc85d296c20b9c25a24c7aa9f0a1627", + "language": "R", + "lines": 53, + "truncated": false, + "block": 9, + "row": 12884 + }, + { + "path": "scripts/01_processing/DMR_processing.R", + "sha256": "2c138947e6918fc5f5876400f836b42e51d5fbf29ed24f508b598b3b22b0f6e5", + "language": "R", + "lines": 67, + "truncated": false, + "block": 9, + "row": 12897 + }, + { + "path": "scripts/02_analysis/PCA_analysis.R", + "sha256": "88bf24ad6af718ad1734c0a1b726bc4385d04ef873fe16b6b35d0157ab55b2bf", + "language": "R", + "lines": 71, + "truncated": false, + "block": 9, + "row": 12937 + }, + { + "path": "scripts/03_figures/plot_Figure1.R", + "sha256": "5e069009c107ef3bc6e881b76ac53e1674b2f5b4223183153d44436e41080e4e", + "language": "R", + "lines": 105, + "truncated": false, + "block": 9, + "row": 13079 + }, + { + "path": "scripts/03_figures/plot_Figure2.R", + "sha256": "31e0f534487f8cdc103fe4c43dc6f133f4891e989760578d49e6b31219ea2401", + "language": "R", + "lines": 140, + "truncated": false, + "block": 9, + "row": 13083 + }, + { + "path": "scripts/03_figures/plot_Figure3.R", + "sha256": "2048802e44b29e194b4004c48cfd0a1b51a704073acd6f65a1106cd08de30be8", + "language": "R", + "lines": 118, + "truncated": false, + "block": 9, + "row": 13022 + }, + { + "path": "scripts/03_figures/plot_Figure4.R", + "sha256": "7f5e070d897db88edfe203271dc4d7a4d3db2345489c741dc2277cd150de8ac1", + "language": "R", + "lines": 163, + "truncated": false, + "block": 9, + "row": 13176 + }, + { + "path": "scripts/run_all.R", + "sha256": "c047a7078c1c1116113aa05dc3e844a01228457afa033704017ef8d1db6234f4", + "language": "R", + "lines": 68, + "truncated": false, + "block": 9, + "row": 12993 + }, + { + "path": "scripts/utils.R", + "sha256": "5d7728d94aa6679423a6809298dcdd1fdb1dd0d11acf125505ba3ab4a98ed58b", + "language": "R", + "lines": 84, + "truncated": false, + "block": 9, + "row": 12975 + } + ] +} \ No newline at end of file diff --git a/manifests/74/figshare__31904626.json b/manifests/74/figshare__31904626.json new file mode 100644 index 0000000000000000000000000000000000000000..e30a6e336e14e9106e0ea6b70312440cf9f09c31 --- /dev/null +++ b/manifests/74/figshare__31904626.json @@ -0,0 +1,21 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "figshare:31904626", + "url": "https://doi.org/10.6084/m9.figshare.31904626", + "host": "figshare.com", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "analysis_combined copy.R", + "sha256": "bf7c81c99eca5df2182f226136007f42e23510ca6204be7d35c9d985dc3be1dc", + "language": "R", + "lines": 586, + "truncated": false, + "block": 9, + "row": 13828 + } + ] +} \ No newline at end of file diff --git a/manifests/74/github.com__ef-lab__ethopy_package.json b/manifests/74/github.com__ef-lab__ethopy_package.json new file mode 100644 index 0000000000000000000000000000000000000000..9ac7bb9decfc2c2f76c2904dd579697f68418283 --- /dev/null +++ b/manifests/74/github.com__ef-lab__ethopy_package.json @@ -0,0 +1,561 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ef-lab/ethopy_package", + "url": "https://github.com/ef-lab/ethopy_package", + "host": "github.com", + "commit": "b478cf90a25c06301fc7fd5fd62dce9ae3250182", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "58817164eb1caedd1af8a72c2ecb1ac6fd783e253f2819222fd2eea2be70c601", + "language": "License", + "lines": 22, + "truncated": false, + "block": 9, + "row": 2822 + }, + { + "path": "README.md", + "sha256": "43934ed9449ea2378b4c6a863d1064ea15051366dfe5f875ac116ac215fdd921", + "language": "Text", + "lines": 96, + "truncated": false, + "block": 9, + "row": 14621 + }, + { + "path": "src/ethopy/__init__.py", + "sha256": "5ac14ae88ddd406bcc39c8e25466e3429b273da2db92e7b167a023d7b825e491", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7487 + }, + { + "path": "src/ethopy/behaviors/__init__.py", + "sha256": "5af6336a3bb2d60fb80542b4822830763d4b643cd841e94ee701c8a7a6289171", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6405 + }, + { + "path": "src/ethopy/behaviors/head_fixed.py", + "sha256": "d86689179ed7720bcb331db9a6f50cd046bccef49089835cb6202a6794f473bc", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 9, + "row": 6547 + }, + { + "path": "src/ethopy/behaviors/multi_port.py", + "sha256": "0b87ec78d2143b02dd9f11ee0e9bf8f8a79d3fe18d0abe391f52209d3dbb8ab0", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 9, + "row": 8830 + }, + { + "path": "src/ethopy/cli.py", + "sha256": "47ed417cadc6a133f7e405ad16d471bd165b9669c03910a108c0a6a41f5a0f92", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8051 + }, + { + "path": "src/ethopy/config.py", + "sha256": "e5e8f121b7728410d6402f78c41e3f7d448f96d316b25f33a6ddab08dd57b9d9", + "language": "Python", + "lines": 232, + "truncated": false, + "block": 9, + "row": 10446 + }, + { + "path": "src/ethopy/core/__init__.py", + "sha256": "18e1b69292f534e4851c409322aa4b0a71eefd4742f2f94166c9eaeb14904615", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6102 + }, + { + "path": "src/ethopy/core/behavior.py", + "sha256": "4004c61d7c1fbf8fec4799da2b6213434be5d1c3ab69d663621abe076bc1630e", + "language": "Python", + "lines": 484, + "truncated": false, + "block": 9, + "row": 11664 + }, + { + "path": "src/ethopy/core/experiment.py", + "sha256": "051c47726e4292a8c92693f2fb06bf0fc0e2ba7aa84d91eca1c7a4dc841a7fa7", + "language": "Python", + "lines": 1121, + "truncated": false, + "block": 9, + "row": 12420 + }, + { + "path": "src/ethopy/core/interface.py", + "sha256": "c7fc82c84404823c77e398947980678af6459225d1363749b285c3bfa393d493", + "language": "Python", + "lines": 571, + "truncated": false, + "block": 9, + "row": 11785 + }, + { + "path": "src/ethopy/core/logger.py", + "sha256": "f0a993ae088d5edc39739ba3b321e85414246b709a36703fcdc6ee086771526d", + "language": "Python", + "lines": 1072, + "truncated": false, + "block": 9, + "row": 12422 + }, + { + "path": "src/ethopy/core/mice.py", + "sha256": "e28c0b2e42d63785f094f4441436742fe9d506692fddec5a3762e3b69555ba96", + "language": "Python", + "lines": 233, + "truncated": false, + "block": 9, + "row": 10568 + }, + { + "path": "src/ethopy/core/recordings.py", + "sha256": "3b45891090cc0f0835c4aa58ef92f107af400c57b882e7558fec753cc7b8ca92", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7017 + }, + { + "path": "src/ethopy/core/stimulus.py", + "sha256": "5cbd9ad7d5455f32ff1547efa1ca69de0ebcb625d28e41bd653ab0d77de1ba45", + "language": "Python", + "lines": 242, + "truncated": false, + "block": 9, + "row": 10479 + }, + { + "path": "src/ethopy/experiments/__init__.py", + "sha256": "5af6336a3bb2d60fb80542b4822830763d4b643cd841e94ee701c8a7a6289171", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6405 + }, + { + "path": "src/ethopy/experiments/calibrate.py", + "sha256": "a78c46245244e52a685e1e7f294b8c69b73df9e408c5c94372d7cfb34bbe797c", + "language": "Python", + "lines": 492, + "truncated": false, + "block": 9, + "row": 11631 + }, + { + "path": "src/ethopy/experiments/free_water.py", + "sha256": "79b27be8266308429457fa2f09e0c194f1db6529b85ee04079eab67189f70324", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 9, + "row": 9039 + }, + { + "path": "src/ethopy/experiments/match_port.py", + "sha256": "4d5f707ef78f996ac6496f845b018b0f0e14c4ead3c63fca23bf93f5e17eab92", + "language": "Python", + "lines": 287, + "truncated": false, + "block": 9, + "row": 10483 + }, + { + "path": "src/ethopy/experiments/passive.py", + "sha256": "3ac605124a7e5241d2f0815d2082a51fd206ca75b82fe4a4e7d8e9e8ac96cdcb", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8061 + }, + { + "path": "src/ethopy/interfaces/Arduino.py", + "sha256": "ea956649e86c1ffc5b76dbf24b609512cbec0af2878546fd71a9d0f16963d26b", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 9, + "row": 10234 + }, + { + "path": "src/ethopy/interfaces/Ball.py", + "sha256": "31ea048bdb2f2e033d0789111e163e530ca1f74b6e05894b56e1d458ff2687fb", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 9455 + }, + { + "path": "src/ethopy/interfaces/Camera.py", + "sha256": "de894c3d96b8113527d9e21a8efff22394494fe6313fba2ad1fe0ffad5dff8a4", + "language": "Python", + "lines": 1080, + "truncated": false, + "block": 9, + "row": 12392 + }, + { + "path": "src/ethopy/interfaces/DummyPorts.py", + "sha256": "58c59ef3aeb6c8a76c6315e20587ad9c5c8789fc578a8123724c12208d9f9691", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 9045 + }, + { + "path": "src/ethopy/interfaces/PCPorts.py", + "sha256": "b459a3f33c6f17849263080820fe51974921a0e707e2b84844a9f266ec6fee5d", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7124 + }, + { + "path": "src/ethopy/interfaces/RPPorts.py", + "sha256": "39bc84349fd3404246c521d104bea76c66c0bc137112a383fc8a1bdd313fd9cf", + "language": "Python", + "lines": 319, + "truncated": false, + "block": 9, + "row": 11449 + }, + { + "path": "src/ethopy/interfaces/RPVR.py", + "sha256": "746790b82e1c827dbc998859c5cc4fcabc9c99f6f6ab633c2c347cef09bda720", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7419 + }, + { + "path": "src/ethopy/interfaces/__init__.py", + "sha256": "5af6336a3bb2d60fb80542b4822830763d4b643cd841e94ee701c8a7a6289171", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6405 + }, + { + "path": "src/ethopy/interfaces/dlc.py", + "sha256": "c10662750776d5574ec972c2ffa73068d443ade0c0c23a5aaf023ecc03a65208", + "language": "Python", + "lines": 583, + "truncated": false, + "block": 9, + "row": 11968 + }, + { + "path": "src/ethopy/plugin_manager.py", + "sha256": "23f7521301c43cb29fc032f09fcb4371aae71aa4c8a3e4e8aa523c44a9d9b42b", + "language": "Python", + "lines": 325, + "truncated": false, + "block": 9, + "row": 11118 + }, + { + "path": "src/ethopy/run.py", + "sha256": "3f6e3fb7b5ba3c54dd5ccd973a6e99f1da168d15c446e6415cae094b9c7323a0", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7827 + }, + { + "path": "src/ethopy/setup_db.py", + "sha256": "4219209edaef8dc6229258f4b47d5a6493e5fa07b17ea8f639b2a445d6de1a0b", + "language": "Python", + "lines": 370, + "truncated": false, + "block": 9, + "row": 11142 + }, + { + "path": "src/ethopy/stimuli/__init__.py", + "sha256": "5af6336a3bb2d60fb80542b4822830763d4b643cd841e94ee701c8a7a6289171", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6405 + }, + { + "path": "src/ethopy/stimuli/bar.py", + "sha256": "6c5115f5f64a3f591195e60c515f3781dd13cdbec6cb7a104c32d3b6d2269cf2", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 9750 + }, + { + "path": "src/ethopy/stimuli/dot.py", + "sha256": "6f985c90500dc5fbaf272a489cef8823a82c9bac3251efd7707326503bd07fed", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 8208 + }, + { + "path": "src/ethopy/stimuli/grating.py", + "sha256": "597d037e3b26a177a9b21df5c837a7a31a43f0c19a02559497b1f85b05378f9a", + "language": "Python", + "lines": 242, + "truncated": false, + "block": 9, + "row": 10674 + }, + { + "path": "src/ethopy/task/bar_test.py", + "sha256": "264c7a81b0d3eb9d6a0485c78b275614b8452b1159fa4d6d7e07ac7fb0168625", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 9, + "row": 7198 + }, + { + "path": "src/ethopy/task/calibrate_ports.py", + "sha256": "193706ab76796ba01865e2bc086391a11378fecfe3d557374733fede567deee7", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6585 + }, + { + "path": "src/ethopy/task/dot_test.py", + "sha256": "26637cfc5e91f4625c3ec1538f38fdf3d26fe0f400458cc5dac314d7ad7aae3b", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7241 + }, + { + "path": "src/ethopy/task/free_water.py", + "sha256": "e7c53d5592f61820a5fc6e64edd8a74705dd9850924ded4ab10f211f12504dbc", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7329 + }, + { + "path": "src/ethopy/task/grating_test.py", + "sha256": "c38657fafe93c69b169860b0f17cabbaa77ad69420d86685f9a3870f6ef4020c", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7539 + }, + { + "path": "src/ethopy/task/no_stimulus.py", + "sha256": "20079d165099cf2497446bca7ba9bfef7adc9fa9472585b57be430ff4ec5ef22", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6652 + }, + { + "path": "src/ethopy/utils/create_ethopy_task.py", + "sha256": "7a7a2117a8312416a03d4e5fca862f175e999e895760d5cff7e29bed809421f9", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 9, + "row": 10108 + }, + { + "path": "src/ethopy/utils/ethopy_logging.py", + "sha256": "4da8419af88facf8ee0f0078442fa79081e649ddd92cade45e4097c24d0a9dbc", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 9, + "row": 9841 + }, + { + "path": "src/ethopy/utils/exceptions.py", + "sha256": "247793959b24d1d0f83315cb5e2bac221f69e75de6d9a753bb71acd782f24ef3", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 7896 + }, + { + "path": "src/ethopy/utils/export/nwb.py", + "sha256": "c09a4cc740e774ae4ad52cc4bdaf80c5a1a3bafc44d82d8585b403320cacbddb", + "language": "Python", + "lines": 1632, + "truncated": false, + "block": 9, + "row": 12526 + }, + { + "path": "src/ethopy/utils/helper_functions.py", + "sha256": "9b58a67d1000fc881ef9de3ed4da422037e94a98451c0d123723534df8206b00", + "language": "Python", + "lines": 548, + "truncated": false, + "block": 9, + "row": 11730 + }, + { + "path": "src/ethopy/utils/presenter.py", + "sha256": "a3e64683175bd1d0196c050d0e416fe0244e169a30ed70f9cd2c4a7530b39aa2", + "language": "Python", + "lines": 173, + "truncated": false, + "block": 9, + "row": 10128 + }, + { + "path": "src/ethopy/utils/start.py", + "sha256": "e44b04d9a9148052b0c667de29e323ebe6d0baa568a37c91325dbee4521bc535", + "language": "Python", + "lines": 400, + "truncated": false, + "block": 9, + "row": 11202 + }, + { + "path": "src/ethopy/utils/task.py", + "sha256": "8dfd5853a3bd445297cf802ff46b05ac30b1f19ef36948b7dc7b7f0cdf873823", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 9, + "row": 8775 + }, + { + "path": "src/ethopy/utils/task_helper_funcs.py", + "sha256": "fccc7e5c1d80a404df023e987d21b04a182c3e75ce96348dfb085b8100ba4f50", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 9052 + }, + { + "path": "src/ethopy/utils/thread_worker.py", + "sha256": "c12ff0bd14e9696795b5540f14af963f7defe4f4ae6a30e72fc194d516897963", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 9, + "row": 7100 + }, + { + "path": "src/ethopy/utils/timer.py", + "sha256": "340579a3e57e10f5e01b246c93c4b48fdad5f30c8aa4693a5db04cd1de1919e1", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6606 + }, + { + "path": "src/ethopy/utils/touch_interface.py", + "sha256": "db9fdd25878aa615220472763688ada3653af73691229dc9add507da4612bf76", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 9, + "row": 9580 + }, + { + "path": "src/ethopy/utils/writer.py", + "sha256": "e0f867ef1a1bf96f1802ea3502cc0cb52a2c7619c2e839681ac4ea627cb2413a", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 9, + "row": 8350 + }, + { + "path": "tests/conftest.py", + "sha256": "07ddfe3b1d1fa55f1794b22d038a2eb6d2469efe2177284308ebae0bd1168e7f", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 9, + "row": 9693 + }, + { + "path": "tests/test_behavior.py", + "sha256": "8524fb9128cdb25055e69910a8406c7ca8c7c9379ddea75126d0d53007287a79", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 9, + "row": 9487 + }, + { + "path": "tests/test_experiment.py", + "sha256": "6dfefba7626aa4715119b65001ca269ed0fb3d27ac5fea97183a58b934985027", + "language": "Python", + "lines": 283, + "truncated": false, + "block": 9, + "row": 10939 + }, + { + "path": "tests/test_logger.py", + "sha256": "fc1b13fa14c98eff74257a6b84f0237fd887a12a1f88f88a5450c28da869bb6f", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 8983 + }, + { + "path": "tests/test_task_helper_funcs.py", + "sha256": "42607e2b58a6ceb00226bac76a952f9114651f8793da5ba9c6ce29b47b2197e8", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 9514 + } + ] +} \ No newline at end of file diff --git a/manifests/75/github.com__mojaveazure__pbmc3k.json b/manifests/75/github.com__mojaveazure__pbmc3k.json new file mode 100644 index 0000000000000000000000000000000000000000..f0aa0ae1a7c4c70d0ac12ef80fa1a2746da18658 --- /dev/null +++ b/manifests/75/github.com__mojaveazure__pbmc3k.json @@ -0,0 +1,66 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/mojaveazure/pbmc3k", + "url": "https://github.com/mojaveazure/pbmc3k", + "host": "github.com", + "commit": "d3edca829774ce4dcd4735114c1414b74cd8f852", + "license": "CC-BY-4.0", + "license_confirmed_by": "license file LICENSE.md", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.md", + "sha256": "2a82ac9bbc3e3ee066908381e8d373896db5a6025d083fbd59692fe9ccfb9111", + "language": "License", + "lines": 395, + "truncated": false, + "block": 6, + "row": 2099 + }, + { + "path": "R/zzz.R", + "sha256": "97e48848c78a3fc041b40929c59449d3f24652a331dcc423585d5a09566a7722", + "language": "R", + "lines": 88, + "truncated": false, + "block": 9, + "row": 13035 + }, + { + "path": "data/pbmc3k.R", + "sha256": "af785f4aee3027c3d3254999f43ec9fda4f289c4da37b792b9569d61a57e948a", + "language": "R", + "lines": 49, + "truncated": false, + "block": 9, + "row": 12880 + }, + { + "path": "data/pbmc3k.sce.logcounts.R", + "sha256": "6f9aea2124803cb5ba0b213a754af3c2fcd978ce960f42dff13d97d332c3a6b3", + "language": "R", + "lines": 83, + "truncated": false, + "block": 9, + "row": 12983 + }, + { + "path": "data/pbmc3k.seurat.counts.R", + "sha256": "81002bbe7d8bb4f204f2ef2e1f080932117d6dc4ebca450a0e4004a7daf62194", + "language": "R", + "lines": 64, + "truncated": false, + "block": 9, + "row": 12895 + }, + { + "path": "data/pbmc3k.seurat.norm.R", + "sha256": "2c86c5ddaf8d0384b7a65af045a4864b758ebf71d154928b9618395e2e1bd245", + "language": "R", + "lines": 92, + "truncated": false, + "block": 9, + "row": 13003 + } + ] +} \ No newline at end of file diff --git a/manifests/75/github.com__neurogenetics__gwas_locus_browser.json b/manifests/75/github.com__neurogenetics__gwas_locus_browser.json new file mode 100644 index 0000000000000000000000000000000000000000..c6b8cc76505c2960fa84ed7b1248e7f9219021d6 --- /dev/null +++ b/manifests/75/github.com__neurogenetics__gwas_locus_browser.json @@ -0,0 +1,597 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/neurogenetics/gwas_locus_browser", + "url": "https://github.com/neurogenetics/GWAS_locus_browser", + "host": "github.com", + "commit": "050e1a57138fe72bc39ae14e68fbc9e48b3440ba", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "About.R", + "sha256": "9e6afd9690733ed5c248ff23d9ab1a94e5dcd1c4aadfffdfdbc80de763d2b0b1", + "language": "R", + "lines": 16, + "truncated": false, + "block": 9, + "row": 12791 + }, + { + "path": "DataProcessing/burden/ReadBurdenValuesScript.R", + "sha256": "84a02f9136fb92eca7122526eef39926305da98eb1c05d8664e201f4acb86ce9", + "language": "R", + "lines": 123, + "truncated": false, + "block": 9, + "row": 13273 + }, + { + "path": "DataProcessing/codingvars/gen_coding_vars_ldlink.ipynb", + "sha256": "80822150385dcb42066503a55ce6b21996f63d6a2651eafa40b14da215ec38e7", + "language": "Jupyter", + "lines": 269, + "truncated": false, + "block": 9, + "row": 2409 + }, + { + "path": "DataProcessing/codingvars/gen_coding_vars_plink.ipynb", + "sha256": "8f252c8d6ed3450592f37d16ffc81490b9fad3dd13b62de9b0341699298a38a0", + "language": "Jupyter", + "lines": 375, + "truncated": false, + "block": 9, + "row": 2498 + }, + { + "path": "DataProcessing/codingvars/getRiskSNPProxies.R", + "sha256": "4e64c32f26fad438f0458427f02fbe16cef61f92e705e4f92876672fe36005e8", + "language": "R", + "lines": 48, + "truncated": false, + "block": 9, + "row": 12857 + }, + { + "path": "DataProcessing/coexpression/coexpression_data.ipynb", + "sha256": "05c21525ce86997a7fb85d3f7074d05c92c8660a52917616923337ba933ff529", + "language": "Jupyter", + "lines": 131, + "truncated": false, + "block": 9, + "row": 2296 + }, + { + "path": "DataProcessing/constraint/ReadConstraintValuesScript.py", + "sha256": "d0378f9a2c7067f70c0a3fd9a2a42d0a5f0c795aca580ec267c4ef0ef032a4d2", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7940 + }, + { + "path": "DataProcessing/diseasegene/DiseaseGeneEvidenceScript.py", + "sha256": "f1f44fab8f55bcffbb3aa0c5bc812adad3cc89db9021df163b3345f9d764e7fc", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 7960 + }, + { + "path": "DataProcessing/diseasegene/disease_gene_file.ipynb", + "sha256": "79553065599a1749d65b3b3d6e0ede6dd5dfb22e1cb4b7dd0f3a9fa7e0f3f635", + "language": "Jupyter", + "lines": 151, + "truncated": false, + "block": 9, + "row": 2285 + }, + { + "path": "DataProcessing/evidence/merge_evidence.R", + "sha256": "6f31c87314107483f543f1d7b26ca81ba996eed4b2c6c27369a19ba30405ecc3", + "language": "R", + "lines": 36, + "truncated": false, + "block": 9, + "row": 12928 + }, + { + "path": "DataProcessing/expression/ReadExpressionValuesScript.R", + "sha256": "990c5fbd1c135b0d0a153dfe5dad92fd5b286d4aa9432f246e6ce728aac18ca1", + "language": "R", + "lines": 133, + "truncated": false, + "block": 9, + "row": 13323 + }, + { + "path": "DataProcessing/expression/exp_violin_plots.R", + "sha256": "be858c648dd01115d0ab5f4264e12692c4601c9b68cd8feae0764a892adfe300", + "language": "R", + "lines": 94, + "truncated": false, + "block": 9, + "row": 13088 + }, + { + "path": "DataProcessing/expression/generateSingleCellPlots.R", + "sha256": "bdaebe8e56a7767e4481fb101292d085e15259a6159132d0fa777d628e85952e", + "language": "R", + "lines": 59, + "truncated": false, + "block": 9, + "row": 12961 + }, + { + "path": "DataProcessing/finemapping/.ipynb_checkpoints/finemapping_processing-checkpoint.ipynb", + "sha256": "a2c8b5f826cb2ac7c81ccf6e81ac45970069f54cde94422661b3376ecb6638de", + "language": "Jupyter", + "lines": 418, + "truncated": false, + "block": 9, + "row": 2519 + }, + { + "path": "DataProcessing/finemapping/.ipynb_checkpoints/pd_finemap_summary_stats-checkpoint.ipynb", + "sha256": "b26775966a4d75360e2ae809c7f44fa369b70e32dd0ebf19fed4273a3368d7b5", + "language": "Jupyter", + "lines": 1187, + "truncated": false, + "block": 9, + "row": 2713 + }, + { + "path": "DataProcessing/finemapping/finemapping_processing.ipynb", + "sha256": "a86d5e1b9a430922444ac42ff7b4b818cc8d9a5cee51fe851b09e5c93f1fa7b1", + "language": "Jupyter", + "lines": 418, + "truncated": false, + "block": 9, + "row": 2518 + }, + { + "path": "DataProcessing/finemapping/pd_finemap_summary_stats.ipynb", + "sha256": "902f2e3e0bebb7f6464ffc1b53b39d53e2226558393077c86a3f128caa53ae77", + "language": "Jupyter", + "lines": 1187, + "truncated": false, + "block": 9, + "row": 2714 + }, + { + "path": "DataProcessing/genelist/Harmonize_Summary_Statistics.ipynb", + "sha256": "45db93da607462687b2d487e4eb6fd26d3cf0d039b0f309cd21561908c2cd3cd", + "language": "Jupyter", + "lines": 242, + "truncated": false, + "block": 9, + "row": 2400 + }, + { + "path": "DataProcessing/genelist/Loci_Gene_List.ipynb", + "sha256": "018d8f0d2a076cdf3873c178358814e3d8a5d534080e2310f41540bede0ac585", + "language": "Jupyter", + "lines": 214, + "truncated": false, + "block": 9, + "row": 2369 + }, + { + "path": "DataProcessing/locuszoom/make_interactive_stats.ipynb", + "sha256": "f5bea4de6eaa48ac1ca9647663f7c491ecb95c3a7238a4036003334d2fce5c14", + "language": "Jupyter", + "lines": 113, + "truncated": false, + "block": 9, + "row": 2295 + }, + { + "path": "DataProcessing/locuszoom/static_locus_zoom_plots.ipynb", + "sha256": "1491f7f5225cddc7e2d55702d2b942f545d3edfffa86c5f69a660f20415af38f", + "language": "Jupyter", + "lines": 100, + "truncated": false, + "block": 9, + "row": 2246 + }, + { + "path": "DataProcessing/meta5nom/.ipynb_checkpoints/Meta5NominatedEvidenceScript-checkpoint.py", + "sha256": "eee62a7aa8c0877ddaf9ebd5017c14126d55604f1bd03994ab8f12733497fd24", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 7024 + }, + { + "path": "DataProcessing/meta5nom/Meta5NominatedEvidenceScript.py", + "sha256": "eee62a7aa8c0877ddaf9ebd5017c14126d55604f1bd03994ab8f12733497fd24", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 7024 + }, + { + "path": "DataProcessing/othersummarystats/collect_other_summary_stats.ipynb", + "sha256": "b06253a7786c0a78f356f31a632fb3e180bfb62ff788634cd52d1d844ca67e2a", + "language": "Jupyter", + "lines": 773, + "truncated": false, + "block": 9, + "row": 2641 + }, + { + "path": "DataProcessing/othersummarystats/risk_variant_pop_freq.ipynb", + "sha256": "6be33ec482d476d038e8180f070e42b94969189e5d93ad09d3acd6c6c196769e", + "language": "Jupyter", + "lines": 243, + "truncated": false, + "block": 9, + "row": 2433 + }, + { + "path": "DataProcessing/pdgenes/.ipynb_checkpoints/PDGeneEvidenceScript-checkpoint.py", + "sha256": "1c8714c986580cee217d52b5f1b653efe2d4b4efeacc676eb26b5b4f21cd06d9", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7036 + }, + { + "path": "DataProcessing/pdgenes/PDGeneEvidenceScript.py", + "sha256": "1c8714c986580cee217d52b5f1b653efe2d4b4efeacc676eb26b5b4f21cd06d9", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7036 + }, + { + "path": "DataProcessing/phenovars/get_pheno_vars_file.ipynb", + "sha256": "f71718b853688eaa5110e088baeb8d205b678ed535595dc0ba650c5acfd13703", + "language": "Jupyter", + "lines": 243, + "truncated": false, + "block": 9, + "row": 2425 + }, + { + "path": "DataProcessing/pubmed/GeneCardsScrape.R", + "sha256": "886ed0c3aabee822598798199172c7d728daee6d77bd0744b20c749592db87fb", + "language": "R", + "lines": 70, + "truncated": false, + "block": 9, + "row": 12931 + }, + { + "path": "DataProcessing/pubmed/GenerateWordCloudPlots.R", + "sha256": "edbd4ead44a1f5160f81e31c2233a5ee42a3d17ed3a0591a3f99ccc7f95bbabf", + "language": "R", + "lines": 69, + "truncated": false, + "block": 9, + "row": 12958 + }, + { + "path": "DataProcessing/pubmed/pubmedHitData.R", + "sha256": "651396baced54172943776cc78f8dc0cbc01b84f7c7f16d83d716b120fde860e", + "language": "R", + "lines": 58, + "truncated": false, + "block": 9, + "row": 12992 + }, + { + "path": "DataProcessing/qtl/QTL_Generate_Data.ipynb", + "sha256": "c4484529713d55324201ce911533c45ccc629b5c1e0a77fb8d8242c43c0dddc8", + "language": "Jupyter", + "lines": 366, + "truncated": false, + "block": 9, + "row": 2460 + }, + { + "path": "DataProcessing/qtl/QTL_Generate_Data_Cortex.ipynb", + "sha256": "ed3dbbf3bfcb84d95cd1d105246460e9df99e03ffb2b8defc3ce10ec4946c312", + "language": "Jupyter", + "lines": 225, + "truncated": false, + "block": 9, + "row": 2377 + }, + { + "path": "DataProcessing/qtl/QTL_Generate_Data_Psychencode.ipynb", + "sha256": "265d62a2e13e91179a240be66b70df83fb6a2cff043780fcc29fea236dfe360b", + "language": "Jupyter", + "lines": 450, + "truncated": false, + "block": 9, + "row": 2485 + }, + { + "path": "DataProcessing/qtl/QTL_Proxy_SNPs_And_Plot_Info.ipynb", + "sha256": "fa3669417daba0f5abadf230f69d43519109da857079bfe8be5bdd41b51f59ca", + "language": "Jupyter", + "lines": 760, + "truncated": false, + "block": 9, + "row": 2617 + }, + { + "path": "DataProcessing/qtl/getRiskSNPProxies.R", + "sha256": "366bd5ee003b35f634e44b4a86a290604724c0bedaa85400ab60668be201a5d9", + "language": "R", + "lines": 20, + "truncated": false, + "block": 9, + "row": 12784 + }, + { + "path": "DataProcessing/qtl/plot_qtl_locuscompare.R", + "sha256": "e9efe09b02f04d34e060660ea7775f46c2bbaddbe45834b8cef3d329aa5674ee", + "language": "R", + "lines": 191, + "truncated": false, + "block": 9, + "row": 13284 + }, + { + "path": "DataProcessing/qtl/plot_qtl_locuscompare_cortex.R", + "sha256": "c63cf6294337f4e3d3e1bf8197495ebc3993d3b041f85a8348c63db1fe92031c", + "language": "R", + "lines": 196, + "truncated": false, + "block": 9, + "row": 13298 + }, + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "4d16f9bd4350fa2a5de5ef6af0b742d232bb87c560fea2d0dfc9bcf6788e64c9", + "language": "Text", + "lines": 113, + "truncated": false, + "block": 9, + "row": 14616 + }, + { + "path": "best_candidate_section.R", + "sha256": "fb27beb76f9089c4764764fd7ff078a8b24cf3f14f1ed3c248f5acaf5a7d4cd5", + "language": "R", + "lines": 41, + "truncated": false, + "block": 9, + "row": 12829 + }, + { + "path": "burden_section.R", + "sha256": "2c2267a5f1af9e717f44ae16cbe19c8231a6f0665f79e8015457c5797039a8e7", + "language": "R", + "lines": 80, + "truncated": false, + "block": 9, + "row": 13036 + }, + { + "path": "coding_vars_section.R", + "sha256": "935884befa134b7d03ff8f4f9a10f83f4e56d0a82326e0a123374929a828df79", + "language": "R", + "lines": 84, + "truncated": false, + "block": 9, + "row": 13199 + }, + { + "path": "coexpression_section.R", + "sha256": "ceb16cf641fe4ab7c7d11253034ea7a4626a6b7fb2a912fdc0694dd403a9be5a", + "language": "R", + "lines": 79, + "truncated": false, + "block": 9, + "row": 13107 + }, + { + "path": "constraint_section.R", + "sha256": "a62e746568d1709309355889f9aa59ef0a3a996c6335b3959a9f5cb274b727b9", + "language": "R", + "lines": 80, + "truncated": false, + "block": 9, + "row": 13099 + }, + { + "path": "disease_gene_section.R", + "sha256": "477e1f0cf5c879ed8554ac543ab2174c99770bcec9fa5c675add2d0765f3eed9", + "language": "R", + "lines": 80, + "truncated": false, + "block": 9, + "row": 13102 + }, + { + "path": "evidence_section.R", + "sha256": "5b304ee1d84328af857070618ec2aca48b13c8b84264534bd0d2f8b078bbcea0", + "language": "R", + "lines": 226, + "truncated": false, + "block": 9, + "row": 13610 + }, + { + "path": "expression_section.R", + "sha256": "6bafbdc1cad60ab9db39ab12d862337c67ed1767282af4de2e9b0916733751d7", + "language": "R", + "lines": 135, + "truncated": false, + "block": 9, + "row": 13348 + }, + { + "path": "finemap_section.R", + "sha256": "aca1ea1c530f3bf8d886228bfb50d38b5909e18794e56c6c5f9718a235d62df0", + "language": "R", + "lines": 51, + "truncated": false, + "block": 9, + "row": 12932 + }, + { + "path": "global.R", + "sha256": "28a05320d820035ff73a984402fa5c833456ba55c012886b9c87d2d85d9d57ba", + "language": "R", + "lines": 65, + "truncated": false, + "block": 9, + "row": 12963 + }, + { + "path": "literature_section.R", + "sha256": "a901a5ef228ee665e48985fc4b09f1a48a388b125e60f00a8542205c52d65c58", + "language": "R", + "lines": 160, + "truncated": false, + "block": 9, + "row": 13413 + }, + { + "path": "locus_zoom_section.R", + "sha256": "75b9a7e5d671f70d5f58917bda25fc7e5d9495a9a23038bc6da600c625ff5d06", + "language": "R", + "lines": 66, + "truncated": false, + "block": 9, + "row": 13085 + }, + { + "path": "pathways_section.R", + "sha256": "f3cb8d617739f3d4fe354c9b46f6bd1307522e70eb09462f8d245d7a84c85c1d", + "language": "R", + "lines": 138, + "truncated": false, + "block": 9, + "row": 13324 + }, + { + "path": "pheno_vars_section.R", + "sha256": "2e6b921528843a53d8407b20b84b7ea9fba17523983df4d8c280b15787ee8d8d", + "language": "R", + "lines": 49, + "truncated": false, + "block": 9, + "row": 13000 + }, + { + "path": "qtl_section.R", + "sha256": "8ff39a6661bb10d9a16e5e937f9014c771fbdde509196ac0ca269db92f589b66", + "language": "R", + "lines": 430, + "truncated": false, + "block": 9, + "row": 13759 + }, + { + "path": "server.R", + "sha256": "d445c8a45e496d7c2b595494d2fdc3178158a72c843893e169221257d62d0fee", + "language": "R", + "lines": 87, + "truncated": false, + "block": 9, + "row": 13057 + }, + { + "path": "sidebar.R", + "sha256": "67789e95e8f0cb9217d398c800f1ead4768071fce28c1547e933bf67ba21f638", + "language": "R", + "lines": 257, + "truncated": false, + "block": 9, + "row": 13546 + }, + { + "path": "summary_statistics_section.R", + "sha256": "e4d4dd7ba9c70b040b3f3a8db6f7fb8331d1f10d98404602ef4ed93f2341e760", + "language": "R", + "lines": 282, + "truncated": false, + "block": 9, + "row": 13652 + }, + { + "path": "tutorial.R", + "sha256": "cafa98fe44fa24b7c388d02cf83933394d7f7f0af6307a0c6f1b670613b297a5", + "language": "R", + "lines": 459, + "truncated": false, + "block": 9, + "row": 13774 + }, + { + "path": "ui.R", + "sha256": "a992b8aef5f6fb9adee0d0db02ac101694bbf29783b9ea0124d95d7d8a9da103", + "language": "R", + "lines": 174, + "truncated": false, + "block": 9, + "row": 13502 + }, + { + "path": "www/javascript/call_locus_zoom.js", + "sha256": "f813a3a8c9291a33508b4f1d9a92a4ddead7960644774a34cd1dd134fd4186da", + "language": "JavaScript", + "lines": 38, + "truncated": false, + "block": 9, + "row": 2045 + }, + { + "path": "www/javascript/google-analytics.js", + "sha256": "a3a88d857c9d234e9e3adac3900f5ca467d958cc9c61c6ef3eb498d2e1be160d", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 9, + "row": 2018 + }, + { + "path": "www/javascript/jquery-ui.min-draggable+position.js", + "sha256": "9014294bd477f54d9dffb82309be319a8720165fdebf407f571c1a811a407569", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 9, + "row": 2115 + }, + { + "path": "www/javascript/navigate.js", + "sha256": "3a08815e46b219829806d332f4bdc31832ffcf0749d1eed0f2b9b2f1e659bb91", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 9, + "row": 2021 + }, + { + "path": "www/javascript/tutorial.js", + "sha256": "7a8990fb38f6f7be3282a1beee86b7280113517f906d343ccbd16e7810bb4845", + "language": "JavaScript", + "lines": 149, + "truncated": false, + "block": 9, + "row": 2065 + } + ] +} \ No newline at end of file diff --git a/manifests/75/github.com__ontox-maps__paper_data_oligdev.json b/manifests/75/github.com__ontox-maps__paper_data_oligdev.json new file mode 100644 index 0000000000000000000000000000000000000000..cb71431cdaca40bb3ef011d796d186cee1f3ba96 --- /dev/null +++ b/manifests/75/github.com__ontox-maps__paper_data_oligdev.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ontox-maps/paper_data_oligdev", + "url": "https://github.com/ontox-maps/paper_data_OligDev/", + "host": "github.com", + "commit": "1253000f78f89ab67df92adbf7b404b41831d064", + "license": "CC-BY-4.0", + "license_confirmed_by": "license file Licence.md", + "redistribution": "yes", + "files": [ + { + "path": "Licence.md", + "sha256": "19e9aa763183f762ac9065f37efbf14b335369cbcbfda06d3426582b23ab5bc9", + "language": "License", + "lines": 157, + "truncated": false, + "block": 9, + "row": 2908 + }, + { + "path": "README.md", + "sha256": "a399cc4d8a2f1cb7fd8f52d27aded2b8b8f0c76c5557ce3993cb39a7163b658c", + "language": "Text", + "lines": 3, + "truncated": false, + "block": 9, + "row": 14453 + } + ] +} \ No newline at end of file diff --git a/manifests/75/github.com__shapely__shapely.json b/manifests/75/github.com__shapely__shapely.json new file mode 100644 index 0000000000000000000000000000000000000000..194fa274cae3e004926ae5934d3b66c924108cb3 --- /dev/null +++ b/manifests/75/github.com__shapely__shapely.json @@ -0,0 +1,1992 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/shapely/shapely", + "url": "https://github.com/shapely/shapely", + "host": "github.com", + "commit": "30c0a51039d4b4b0b3b74ba117039e2c5849906b", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.txt", + "sha256": "4a207eac9bf257ed286e1c6f0fce253d1abfdb134fc61ec855e37f5692a3f754", + "language": "License", + "lines": 29, + "truncated": false, + "block": 9, + "row": 2889 + }, + { + "path": "README.rst", + "sha256": "369d1740229afbe485b14b3d3d5406537b2b1be0355447e96061dff0723142a0", + "language": "Text", + "lines": 172, + "truncated": false, + "block": 9, + "row": 14655 + }, + { + "path": "benchmarks/benchmarks.py", + "sha256": "b04034d293881c86147c32af865b0f7ca966153af964f42d00296b248f9c7f1f", + "language": "Python", + "lines": 374, + "truncated": false, + "block": 9, + "row": 11175 + }, + { + "path": "ci/install_geos.sh", + "sha256": "0e4c4119d2e4bf4d92803de9f07894c6bbb1ce673088a75c2bd0fbc3a53d3135", + "language": "Shell", + "lines": 64, + "truncated": false, + "block": 9, + "row": 14222 + }, + { + "path": "docs/code/buffer.py", + "sha256": "3331c0f81ddbe4b4b9e068a67fceaec358217d6e541290b4b4f38eb7add0f909", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 6952 + }, + { + "path": "docs/code/buffer_single_side.py", + "sha256": "f96903424e7e67ee428012b941831fc7c5fae94a74e71c6d49fed97a4debbe7e", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 6996 + }, + { + "path": "docs/code/convex_hull.py", + "sha256": "dc98f55c0863bd5f82af0e739fc41857e1ae5fba71187272c312d0e9d53a4c01", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 6918 + }, + { + "path": "docs/code/coverage_simplify.py", + "sha256": "4d515ac03e49317a3c725652dfaf872b9a3662c5761cf72e0e462dea5c36753b", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7674 + }, + { + "path": "docs/code/difference.py", + "sha256": "4d2d9d9ee8b898c46b365099483f2f492ba87e669a0198936122537576dee161", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 6986 + }, + { + "path": "docs/code/figures.py", + "sha256": "218e8cd9b751ca246d4e833165c0b08f046bbbbba74b05ca72cca55854deed9d", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6793 + }, + { + "path": "docs/code/geometrycollection.py", + "sha256": "68cd764de9560c6b5e93afb667a1c174b7c7917c77832cf2b959ea063194f80c", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7059 + }, + { + "path": "docs/code/intersection-sym-difference.py", + "sha256": "165b123defa80ae083ec71edda7bf3c567655cfa3eb4123262f0f03cb8bf70c5", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7009 + }, + { + "path": "docs/code/linearring.py", + "sha256": "2df72563682a15a5c9dd73b6db1dcd3f1021f4a5d000a2202dd6ca9333849196", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 6932 + }, + { + "path": "docs/code/linestring.py", + "sha256": "f491743885bfe7aef844288e48e1260975d892584c58c9de6e1cab09eeb21228", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7011 + }, + { + "path": "docs/code/make_valid_geometrycollection.py", + "sha256": "4fb7ca74784b31735d1f13920f6b6bd23cdaef218bd13fa80974f820bf538478", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 6859 + }, + { + "path": "docs/code/make_valid_methods.py", + "sha256": "2835bedf24aa24eaddb7a6a231883e7c04110f810ec502c51a24e7a38ee8bb96", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 7705 + }, + { + "path": "docs/code/make_valid_multipolygon.py", + "sha256": "5e4241d1cbc7413424b4810249c6e4e9f9928fa096d724546a8ec4f87965879f", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6866 + }, + { + "path": "docs/code/minimum_rotated_rectangle.py", + "sha256": "d88849a3ece3013be28c6b61f74f3632f06d6bb646ebf1c0ec17aae36fb87877", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7023 + }, + { + "path": "docs/code/multilinestring.py", + "sha256": "272387a81b487002a102cc423f501a1aba80ed2f1a65ff36a1677a060aecc698", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7040 + }, + { + "path": "docs/code/multipolygon.py", + "sha256": "32199a6c92dfe49982ed2d0f94efa48032519422654d75dd74204deea3fec749", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7050 + }, + { + "path": "docs/code/parallel_offset.py", + "sha256": "dc6a8897349d589f5ee3b7d5c37cb381c7fd80e32f11f544ad0c31a035ac2aec", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 7658 + }, + { + "path": "docs/code/parallel_offset_mitre.py", + "sha256": "f75b7d01fa92fc62d02ea7bdca05bda32edc0e38a5a776066d7de1df3a00a0e4", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 7738 + }, + { + "path": "docs/code/polygon.py", + "sha256": "24849c897e6f737c53d79800d579bc63937ca9baa47657621afe3db20de4a0f1", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7047 + }, + { + "path": "docs/code/polygon2.py", + "sha256": "b8d28bb4b2570d9f1a1c9f9588478d9b005cd71c4a3ab8e4891aac39de99d9b0", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7114 + }, + { + "path": "docs/code/rotate.py", + "sha256": "d01aa62f490711d52424763508a8a5ce91203847a196f9b7e0c736eeef88b94b", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 6978 + }, + { + "path": "docs/code/scale.py", + "sha256": "138c68c5b06598edcd1129e96448331da84ca99ac8dc7442f3a1b2bf11b37b86", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7069 + }, + { + "path": "docs/code/simplify.py", + "sha256": "78211e79ffb72b0acee5c789f0893b593ecbab4df69f40a125aa035c8cb72e5e", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 6862 + }, + { + "path": "docs/code/skew.py", + "sha256": "ea520e3ff32a0bbbffeea763288638d533c19091fceb652e84c24f59c5fba04f", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7723 + }, + { + "path": "docs/code/triangulate.py", + "sha256": "fedb40b6e06df70a7dc5c2fae5363055dfede96a13149750a30631b5f2406944", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6700 + }, + { + "path": "docs/code/unary_union.py", + "sha256": "bd5c0f01a4e12aa1e6121634feaa7ef84ab119e194e1d63e8430ab0418e1e9c1", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6774 + }, + { + "path": "docs/code/union.py", + "sha256": "e76fd8511d60cc088773a619b114e96cb31f8340b663326defdbd2d5e15a7f2f", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7026 + }, + { + "path": "docs/code/voronoi_diagram.py", + "sha256": "fb2c0e8314699cedc4d9c57c1a18c669d157ddf8430bffea0f80c805a81e8308", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6709 + }, + { + "path": "docs/conf.py", + "sha256": "956757081e18b8e50603532d8d3220e32e23974f5ad96f2baa011ecda67ab172", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 9, + "row": 9229 + }, + { + "path": "generate_version.py", + "sha256": "f3486e91c73a6154138cc0bb9b0308de526c10f4c0275464e1bebfd765df7516", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 7825 + }, + { + "path": "src/shapely/__init__.py", + "sha256": "26ba09928e7945b320f06725894ebf7c52743dab8fc1dc3b4255574a42d80157", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7530 + }, + { + "path": "src/shapely/_coverage.py", + "sha256": "d493e2b9705d9430d99d7a4eb534d062f2621ae779b30a4aa428126b6ebbf902", + "language": "Python", + "lines": 275, + "truncated": false, + "block": 9, + "row": 10708 + }, + { + "path": "src/shapely/_enum.py", + "sha256": "c2fa4fae37053900b4d83fea649095e3066c175ad8b1236e6ca66a16ca32d4a3", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7039 + }, + { + "path": "src/shapely/_geometry.py", + "sha256": "dd7a43544c04a8da8454a780600fabdcf0e52f97ae8fc84bdd1220a4796f586f", + "language": "Python", + "lines": 1121, + "truncated": false, + "block": 9, + "row": 12287 + }, + { + "path": "src/shapely/_ragged_array.py", + "sha256": "4e80e2b0d24cbaae74997cf2501d3e446abb63a3d91e3b9d814222567babed31", + "language": "Python", + "lines": 475, + "truncated": false, + "block": 9, + "row": 11668 + }, + { + "path": "src/shapely/affinity.py", + "sha256": "4e4c38685e2d6605d9fb2515e4a1aaca47843714c415e51a6c23459577ba2cec", + "language": "Python", + "lines": 266, + "truncated": false, + "block": 9, + "row": 10471 + }, + { + "path": "src/shapely/algorithms/__init__.py", + "sha256": "647222bee439c391895c1ee1c0ba74cdc91dfdbdb6ea4ebcc230614f493d032a", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6118 + }, + { + "path": "src/shapely/algorithms/_oriented_envelope.py", + "sha256": "03e3980c99535f1076c5ceb42586434c196101f0792ef4c847ab6de355d4eef3", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7866 + }, + { + "path": "src/shapely/algorithms/cga.py", + "sha256": "da30bb860d459958762b82fae17a52a3daffffa6315fcb8ce8ca36be0889d118", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 7706 + }, + { + "path": "src/shapely/algorithms/polylabel.py", + "sha256": "75ff30929b1cfaec6de1254912938f030e57ee01e603df714a0d8c7a76af566a", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7395 + }, + { + "path": "src/shapely/conftest.py", + "sha256": "07eb05abad5d6bae644d77d180c7fe5a33dc659fe9baddbb5c075ba9f2b47c6a", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 7867 + }, + { + "path": "src/shapely/constructive.py", + "sha256": "b05dffebd87ff94cf737aca54b503fb343decae2d3b8873394fa9dd9e54f54da", + "language": "Python", + "lines": 1614, + "truncated": false, + "block": 9, + "row": 12537 + }, + { + "path": "src/shapely/coordinates.py", + "sha256": "6f2ce3297d05a5a5e5d1746de1e2d9d95c18a540799aa9a0f141ac337b9a410a", + "language": "Python", + "lines": 463, + "truncated": false, + "block": 9, + "row": 11650 + }, + { + "path": "src/shapely/coords.py", + "sha256": "eea574e169a7c59d82c0de94390c36fe5e5e683f7a1ffaf3d07cebea01437cff", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 9, + "row": 8541 + }, + { + "path": "src/shapely/creation.py", + "sha256": "0da1eefd597619a18f72a5f5310dc7658a74af7197b2089e220e783099ccde1d", + "language": "Python", + "lines": 854, + "truncated": false, + "block": 9, + "row": 12266 + }, + { + "path": "src/shapely/decorators.py", + "sha256": "cbcfc451fdc2bd1df2c087faca7030ab754fd0250214463924562ea67d7c0490", + "language": "Python", + "lines": 194, + "truncated": false, + "block": 9, + "row": 9829 + }, + { + "path": "src/shapely/errors.py", + "sha256": "96f32fd287d4213a69427a239429e7ab7fab7c96500d2333fe718f6a9f763aee", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8159 + }, + { + "path": "src/shapely/geometry/__init__.py", + "sha256": "f98ad1c4a67e1df4f7c951b89250f9104bdd1477f058d00aea8be3bae361865a", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6888 + }, + { + "path": "src/shapely/geometry/base.py", + "sha256": "c2aea4b354a316436f7e6f2f1db109d508c17b733e1ea6a8560b6719db9e278e", + "language": "Python", + "lines": 1252, + "truncated": false, + "block": 9, + "row": 12458 + }, + { + "path": "src/shapely/geometry/collection.py", + "sha256": "7091fd1818fad92c4a7cd2833a96e6e98ea546d7d51b5a54e61ef13a7e630635", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 7835 + }, + { + "path": "src/shapely/geometry/geo.py", + "sha256": "276c42d8d564041e03416addc20f9af06e4b461896e38bd6733782be66487109", + "language": "Python", + "lines": 154, + "truncated": false, + "block": 9, + "row": 9390 + }, + { + "path": "src/shapely/geometry/linestring.py", + "sha256": "e75bba00bc6c527ccb454004c190977f6be44c4b7e2f703bdc183da7a448ec88", + "language": "Python", + "lines": 216, + "truncated": false, + "block": 9, + "row": 10359 + }, + { + "path": "src/shapely/geometry/multilinestring.py", + "sha256": "c6c10fe27ab3c27eafe9a02daf7374454a61f8bddf4362f9913b0913a99356a3", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 8583 + }, + { + "path": "src/shapely/geometry/multipoint.py", + "sha256": "09b112bee3486d43a6ac4349d679a3e22272a6ef711f1470122478c53b5d4f48", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 8749 + }, + { + "path": "src/shapely/geometry/multipolygon.py", + "sha256": "8d9341ce023f5da369082e26d400461fb25be2428baae18a955ed5e03052bedd", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9232 + }, + { + "path": "src/shapely/geometry/point.py", + "sha256": "a13508b960163ed37698eeac4d1d2ca939f24a6fdce72f4f803f4bfc8c3e0535", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 9, + "row": 9423 + }, + { + "path": "src/shapely/geometry/polygon.py", + "sha256": "a762e77661505fd447a2aa477f1a52cc71d5aadaedb963f9a330855a05fa2fdf", + "language": "Python", + "lines": 364, + "truncated": false, + "block": 9, + "row": 11079 + }, + { + "path": "src/shapely/geos.py", + "sha256": "0803d94b0237b2ed64b68406e22aad59f0c62d94c82fb620678d7a2ed96aa024", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6671 + }, + { + "path": "src/shapely/io.py", + "sha256": "72ff838cabd07b74ccf0ee00915c6247dabb31010881600b997f4fb8f3b2900e", + "language": "Python", + "lines": 413, + "truncated": false, + "block": 9, + "row": 11496 + }, + { + "path": "src/shapely/lib/c_api.c", + "sha256": "780f33ecaefd067eb17bbf42657961bd9006a34991e39f77a5c51418f7a09123", + "language": "C", + "lines": 39, + "truncated": false, + "block": 9, + "row": 9 + }, + { + "path": "src/shapely/lib/c_api.h", + "sha256": "19d7ba5502cb3e4681cc5d375c14427c187bcbfff1fa43b026449430a4fa9ffd", + "language": "C/C++", + "lines": 107, + "truncated": false, + "block": 9, + "row": 1517 + }, + { + "path": "src/shapely/lib/coords.c", + "sha256": "431a38e1552fda5eea8c96f663d11321622e2fc06db7884de1181187fb064924", + "language": "C", + "lines": 656, + "truncated": false, + "block": 9, + "row": 141 + }, + { + "path": "src/shapely/lib/coords.h", + "sha256": "a8012ed0f32bd405c75da95562227c085ddbad3572fe640d8f14584b059a554d", + "language": "C/C++", + "lines": 13, + "truncated": false, + "block": 9, + "row": 1136 + }, + { + "path": "src/shapely/lib/fast_loop_macros.h", + "sha256": "1dc4e175809a1089d236a01e67dbd1673e9c4b31f9bc3462cc085afc28497dc3", + "language": "C/C++", + "lines": 113, + "truncated": false, + "block": 9, + "row": 1594 + }, + { + "path": "src/shapely/lib/geom_arr.c", + "sha256": "53d1c1f12b53f5abc558d2fe37ac0cb1c14e593b9cfe888cb440c8881475ceda", + "language": "C", + "lines": 38, + "truncated": false, + "block": 9, + "row": 1 + }, + { + "path": "src/shapely/lib/geom_arr.h", + "sha256": "8022734e2ddde082575366bb3f82b4b54948d234452878e08a0980c8e4cd6d91", + "language": "C/C++", + "lines": 14, + "truncated": false, + "block": 9, + "row": 1138 + }, + { + "path": "src/shapely/lib/geos.c", + "sha256": "0d870230b49fb75e8beaf0428c507883961ae651e3f0262d2844199ef6b674c2", + "language": "C", + "lines": 1218, + "truncated": false, + "block": 9, + "row": 145 + }, + { + "path": "src/shapely/lib/geos.h", + "sha256": "3e464be2600ca2fcaea88d667af58c439511badc84755ac3bf3435c4dbf1a30d", + "language": "C/C++", + "lines": 237, + "truncated": false, + "block": 9, + "row": 1743 + }, + { + "path": "src/shapely/lib/geos_funcs_O_b.c", + "sha256": "8816831ca4768131e25984c7b20626dc31e8275f253f54beaba1df441053ae7e", + "language": "C", + "lines": 284, + "truncated": false, + "block": 9, + "row": 104 + }, + { + "path": "src/shapely/lib/geos_funcs_O_b.h", + "sha256": "e1f1dd18aa479fdc74d6557a430f0d595a2a05787b03fd21a9879c12a050bbe3", + "language": "C/C++", + "lines": 6, + "truncated": false, + "block": 9, + "row": 1110 + }, + { + "path": "src/shapely/lib/geos_funcs_YYO_b.c", + "sha256": "f8950f787d58fd66a7750d2ee6c98688fb8594cec84006ab00da330c40687b9b", + "language": "C", + "lines": 201, + "truncated": false, + "block": 9, + "row": 79 + }, + { + "path": "src/shapely/lib/geos_funcs_YYO_b.h", + "sha256": "11c5163f7eecf63af630427361cda5ee05f13ee0c375196cd8b5f9f51e830f6e", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1123 + }, + { + "path": "src/shapely/lib/geos_funcs_YY_O.c", + "sha256": "8ea96f854ff9039b286f16a376eb4edbb6024ad6af2c89edef9cafa96d42100d", + "language": "C", + "lines": 155, + "truncated": false, + "block": 9, + "row": 50 + }, + { + "path": "src/shapely/lib/geos_funcs_YY_O.h", + "sha256": "ac1bda591f31c766bd1ee57c233f8ed7173049d8c740e470ad5baf1ee41bcf22", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1118 + }, + { + "path": "src/shapely/lib/geos_funcs_YY_Y.c", + "sha256": "162d9735fe3e443b1ea2ba8116f74d9938120e06903856f24600ea24216d31a2", + "language": "C", + "lines": 334, + "truncated": false, + "block": 9, + "row": 121 + }, + { + "path": "src/shapely/lib/geos_funcs_YY_Y.h", + "sha256": "3a652f4ea58a0d64d9300e311d97645c67b7b0ea63e5061d6e9d359bb55a50ab", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1116 + }, + { + "path": "src/shapely/lib/geos_funcs_YY_b.c", + "sha256": "ed13bec9baf9b0dad61197fe7cec6f1d60f33ea25c9b33be266acb49f72b73fc", + "language": "C", + "lines": 304, + "truncated": false, + "block": 9, + "row": 119 + }, + { + "path": "src/shapely/lib/geos_funcs_YY_b.h", + "sha256": "8033346f512cd0366e4ab50137c6af722c68c7682af61590e9eea0473c3cf6ef", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1117 + }, + { + "path": "src/shapely/lib/geos_funcs_YY_d.c", + "sha256": "ac33e9915ed7f4bee36b57575aa90b8d22d8c9cd09fdaff7d66230a2e9b2d198", + "language": "C", + "lines": 292, + "truncated": false, + "block": 9, + "row": 114 + }, + { + "path": "src/shapely/lib/geos_funcs_YY_d.h", + "sha256": "ef249b7780bfa43f15f1ed7b2ca78e45f45875081c53d099035423e12c0703b1", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1121 + }, + { + "path": "src/shapely/lib/geos_funcs_YYd_Y.c", + "sha256": "8196ea7cb359d53e3373e6fd0d4cfe858ff6397e40f18d59477295a0785395dd", + "language": "C", + "lines": 269, + "truncated": false, + "block": 9, + "row": 109 + }, + { + "path": "src/shapely/lib/geos_funcs_YYd_Y.h", + "sha256": "b4856a39e7fa5e3025edc5d1fa2c25a6bf3b8cbca5fbecbb66ebe05d64efc74c", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1127 + }, + { + "path": "src/shapely/lib/geos_funcs_YYd_b.c", + "sha256": "9d5b92c5c5b2d44f47848fff1e3d4d33ded77c5cee76b3ef308ee9d7cf9b3339", + "language": "C", + "lines": 269, + "truncated": false, + "block": 9, + "row": 107 + }, + { + "path": "src/shapely/lib/geos_funcs_YYd_b.h", + "sha256": "c452cababaed70f45e01539634b7610bff22b8afd1e6bf896c3b9f9428ba7300", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1128 + }, + { + "path": "src/shapely/lib/geos_funcs_YYd_d.c", + "sha256": "59376a0108c27e512de5f1a24581ed2aeb66748579328f09d994457605ee444c", + "language": "C", + "lines": 265, + "truncated": false, + "block": 9, + "row": 112 + }, + { + "path": "src/shapely/lib/geos_funcs_YYd_d.h", + "sha256": "0ce8fb67d9ccf50aed96c204442ccafb75d8c63b7c815abc5edec8ac0101b25b", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1122 + }, + { + "path": "src/shapely/lib/geos_funcs_Y_O.c", + "sha256": "3de44c37c3cea8957964c2f266a69692e9df320623d941009032b91c5e466f55", + "language": "C", + "lines": 151, + "truncated": false, + "block": 9, + "row": 52 + }, + { + "path": "src/shapely/lib/geos_funcs_Y_O.h", + "sha256": "5262032fffc3f6775743f4430607378803a8e354f62b64e690ee6cc6dffaee3f", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1112 + }, + { + "path": "src/shapely/lib/geos_funcs_Y_Y.c", + "sha256": "e9cbb9eec29781fb5e7225dd6e25491057408210088b9d7b9b3dcb43f7ac55eb", + "language": "C", + "lines": 370, + "truncated": false, + "block": 9, + "row": 128 + }, + { + "path": "src/shapely/lib/geos_funcs_Y_Y.h", + "sha256": "c2a19fd4c3f7c12ffa3d7c29317731708563af8ca00d7e9897399857d9a4ede9", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1114 + }, + { + "path": "src/shapely/lib/geos_funcs_Y_b.c", + "sha256": "7a696fc25c8e097a071f38da387a3bad79b24078395c90e2605d2c2dfe1eefce", + "language": "C", + "lines": 315, + "truncated": false, + "block": 9, + "row": 115 + }, + { + "path": "src/shapely/lib/geos_funcs_Y_b.h", + "sha256": "5797ddd7d38d2a16bd4e48d6fbc357b3ddae4786357641bb3438e037cd99f70c", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1113 + }, + { + "path": "src/shapely/lib/geos_funcs_Y_d.c", + "sha256": "703e2aef37354ef06482df919835f9e660b02d7d342f50fddfde0db6a505299c", + "language": "C", + "lines": 340, + "truncated": false, + "block": 9, + "row": 117 + }, + { + "path": "src/shapely/lib/geos_funcs_Y_d.h", + "sha256": "cdae5ae8b5685ad131aed74884d24c6bb98c2cc7d32daa513fb7489299fb8884", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1115 + }, + { + "path": "src/shapely/lib/geos_funcs_Y_i.c", + "sha256": "1dfb561656ad0fa3e35f00d613f6b60c6a2979bac518b487f34bc07f99570d67", + "language": "C", + "lines": 285, + "truncated": false, + "block": 9, + "row": 113 + }, + { + "path": "src/shapely/lib/geos_funcs_Y_i.h", + "sha256": "0ab17fa35f02d1d5850e9d4ebbf2b8c1cd601ca4ce6c312fabb3e61d7bae3a3e", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1111 + }, + { + "path": "src/shapely/lib/geos_funcs_Yd_Y.c", + "sha256": "17f55d8590627ff73dcfe5cb4770a277e572a508cc13c0a38d239371661b0766", + "language": "C", + "lines": 369, + "truncated": false, + "block": 9, + "row": 129 + }, + { + "path": "src/shapely/lib/geos_funcs_Yd_Y.h", + "sha256": "d51fddde47514ea2c26d6e79d90ded999c57c27c6244ac7c42c89c6e42159e6a", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1120 + }, + { + "path": "src/shapely/lib/geos_funcs_Ydb_Y.c", + "sha256": "2bab9046dfcbc2885c11e651cbb883034180cf4f00fd3d6ad352ccf1f3b396ec", + "language": "C", + "lines": 346, + "truncated": false, + "block": 9, + "row": 123 + }, + { + "path": "src/shapely/lib/geos_funcs_Ydb_Y.h", + "sha256": "5c71255a51d741587622f0e4d53bd58a1b9f46e095d03506f364dba8488b12aa", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1125 + }, + { + "path": "src/shapely/lib/geos_funcs_Ydd_b.c", + "sha256": "15a7535d83af4aa78d7223f341943578d3bf6fbabc0630d565af5ca61dd65973", + "language": "C", + "lines": 291, + "truncated": false, + "block": 9, + "row": 111 + }, + { + "path": "src/shapely/lib/geos_funcs_Ydd_b.h", + "sha256": "956e1993d8f55fc8130793223c2af1dab68a4cd2127829f9ac7e1af2ca33828b", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1126 + }, + { + "path": "src/shapely/lib/geos_funcs_Ydddd_Y.c", + "sha256": "a7a338b213957835168e9a4ca7ef20ca84b3dad50300f08b671fef166a7c1eb2", + "language": "C", + "lines": 246, + "truncated": false, + "block": 9, + "row": 92 + }, + { + "path": "src/shapely/lib/geos_funcs_Ydddd_Y.h", + "sha256": "5f1912dbfccc0c82cf21b47441bb525603a63b27edfdefcfc6ae8535da8284b3", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1130 + }, + { + "path": "src/shapely/lib/geos_funcs_Ydi_Y.c", + "sha256": "8702a4f12cfdae3b6fe7516bd5999395e4aa054803512033297cbd7725bbb79e", + "language": "C", + "lines": 279, + "truncated": false, + "block": 9, + "row": 102 + }, + { + "path": "src/shapely/lib/geos_funcs_Ydi_Y.h", + "sha256": "4d7605eb3c1a5d4f151b8c3821180d3832e77b2caaf220a495441f1ce470a1e2", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1124 + }, + { + "path": "src/shapely/lib/geos_funcs_Yi_Y.c", + "sha256": "c1f60e3d1950e504db0693c126e311b36a678b699b5e562a9cc00b3751f6cdff", + "language": "C", + "lines": 405, + "truncated": false, + "block": 9, + "row": 131 + }, + { + "path": "src/shapely/lib/geos_funcs_Yi_Y.h", + "sha256": "caf1bc16eb3cd9841df87a1c7ba101cd8caa8d6468d33841cbcabca8f54b7c17", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1119 + }, + { + "path": "src/shapely/lib/kvec.h", + "sha256": "68dcaf966dd913a71279b276f25a725644f5cb712700f248560fc1c0756e47bf", + "language": "C/C++", + "lines": 92, + "truncated": false, + "block": 9, + "row": 1405 + }, + { + "path": "src/shapely/lib/lib.c", + "sha256": "3cd297eeba5e6e05456009108a4470ae9be5d5b9614a45bb95876041c7e37257", + "language": "C", + "lines": 209, + "truncated": false, + "block": 9, + "row": 64 + }, + { + "path": "src/shapely/lib/pygeom.c", + "sha256": "4968784d05799f17465a05dfbb3f262694883bdfefe49a7b3d148782ab6322d3", + "language": "C", + "lines": 498, + "truncated": false, + "block": 9, + "row": 133 + }, + { + "path": "src/shapely/lib/pygeom.h", + "sha256": "4f71e66121efc8e59d81c57c51e59374faaad7c43c31f99bbbafb8bcaa437871", + "language": "C/C++", + "lines": 29, + "truncated": false, + "block": 9, + "row": 1155 + }, + { + "path": "src/shapely/lib/pygeos.c", + "sha256": "1be243ada5c695b2ef1ecd98c21cdc6ed583a92c7c1e2d7609a54e498e1fb67e", + "language": "C", + "lines": 252, + "truncated": false, + "block": 9, + "row": 76 + }, + { + "path": "src/shapely/lib/pygeos.h", + "sha256": "73fcf3edaffd0173bb941003b6fdcca929e9006ebc55397ab7192af0a20336c6", + "language": "C/C++", + "lines": 8, + "truncated": false, + "block": 9, + "row": 1131 + }, + { + "path": "src/shapely/lib/signal_checks.c", + "sha256": "1c0767c833529f2fa76dccef8615334f3eb9554d01a2ea673f9224aca2c0997c", + "language": "C", + "lines": 17, + "truncated": false, + "block": 9, + "row": 0 + }, + { + "path": "src/shapely/lib/signal_checks.h", + "sha256": "b251f28bd45b3eaec499dcb4686801866408e6989baef6b0b7eb683e19f0c52a", + "language": "C/C++", + "lines": 53, + "truncated": false, + "block": 9, + "row": 1307 + }, + { + "path": "src/shapely/lib/strtree.c", + "sha256": "4e47c7f4b960a9aa8720c9e8098d42fc406659be6e555ff152f38f7d28779988", + "language": "C", + "lines": 1210, + "truncated": false, + "block": 9, + "row": 146 + }, + { + "path": "src/shapely/lib/strtree.h", + "sha256": "c0019eef1f3c88b655e83eb77f6f5736784022b4102c22ee8425b9f2054c60ec", + "language": "C/C++", + "lines": 57, + "truncated": false, + "block": 9, + "row": 1222 + }, + { + "path": "src/shapely/lib/ufuncs.c", + "sha256": "af7d77ccc01acc0f6904c84c371dfc9575dcb776070d5e9a0c312e21c9ca5196", + "language": "C", + "lines": 1997, + "truncated": false, + "block": 9, + "row": 151 + }, + { + "path": "src/shapely/lib/ufuncs.h", + "sha256": "2f65fa5abe095ed65c3d5c8aebda7f443d203cfe353bb01f825c4bfa4cbd429c", + "language": "C/C++", + "lines": 9, + "truncated": false, + "block": 9, + "row": 1132 + }, + { + "path": "src/shapely/lib/vector.c", + "sha256": "92c2e049c13913110595aa0a7cc3bd16b5e7fca4bb20ac8493699635927b7d0f", + "language": "C", + "lines": 42, + "truncated": false, + "block": 9, + "row": 5 + }, + { + "path": "src/shapely/lib/vector.h", + "sha256": "0c42c2a33520ad2070b5242e494fbd201119a7942e48c5ddd6e80e07e1127338", + "language": "C/C++", + "lines": 24, + "truncated": false, + "block": 9, + "row": 1140 + }, + { + "path": "src/shapely/linear.py", + "sha256": "392473ae7f548c479bc5c7decdaa4edfdfa0acb59918267b21e86d8815199281", + "language": "Python", + "lines": 233, + "truncated": false, + "block": 9, + "row": 10562 + }, + { + "path": "src/shapely/measurement.py", + "sha256": "e6639f4ee7ff6e0a80e358dc8154fdf2e87319e18463152cab99b5bea28de225", + "language": "Python", + "lines": 350, + "truncated": false, + "block": 9, + "row": 10900 + }, + { + "path": "src/shapely/ops.py", + "sha256": "246f080d52b958cd6c4001f09025741023bf7868330faf6e50aa9ad3e7947105", + "language": "Python", + "lines": 712, + "truncated": false, + "block": 9, + "row": 12080 + }, + { + "path": "src/shapely/plotting.py", + "sha256": "d9fb8b9d9763c34364943ef555b123272471a0569a283bfa1715f217e897257b", + "language": "Python", + "lines": 222, + "truncated": false, + "block": 9, + "row": 9945 + }, + { + "path": "src/shapely/predicates.py", + "sha256": "02d8c5d6374fadc99699d404722e325b18948d074bfbb2af48f6ab9019133023", + "language": "Python", + "lines": 1391, + "truncated": false, + "block": 9, + "row": 12430 + }, + { + "path": "src/shapely/prepared.py", + "sha256": "43deda7f1121baa5cccb1760360c73b28323a58aa23331d7c27d4717c59b9ae9", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 8122 + }, + { + "path": "src/shapely/set_operations.py", + "sha256": "90f322b76085c43d4c8c6cf78ea3b510230c5d8d230e461338a493c3dfa5c6de", + "language": "Python", + "lines": 775, + "truncated": false, + "block": 9, + "row": 12145 + }, + { + "path": "src/shapely/speedups.py", + "sha256": "bf358006d3f5fb7cc1757e1b619c736f0c4b52012c5a33d3280806637886b5a8", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7104 + }, + { + "path": "src/shapely/strtree.py", + "sha256": "d0fe176d2bcdecb31f02f43bf0ee2210cea6494f16bd8b3b14b7d7ab6e12f39e", + "language": "Python", + "lines": 542, + "truncated": false, + "block": 9, + "row": 11848 + }, + { + "path": "src/shapely/testing.py", + "sha256": "44b323f741131c817f068228003b4d2f149b3fb22355b7c97080d845920c103c", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 9, + "row": 10005 + }, + { + "path": "src/shapely/tests/common.py", + "sha256": "c98c5b1725f4d2a81d3463c6d547c7829e536843be64e5c56548d00073302f4c", + "language": "Python", + "lines": 283, + "truncated": false, + "block": 9, + "row": 10835 + }, + { + "path": "src/shapely/tests/geometry/test_collection.py", + "sha256": "1d48ad96797f70e7ecb27d40e4dab098439c796ac75a031083ce077ef2ef6e02", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8221 + }, + { + "path": "src/shapely/tests/geometry/test_coords.py", + "sha256": "1185330a8cbb115ede28504e72af243542abaa72fe9712d2ef797ca9b6e5718c", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 9, + "row": 9070 + }, + { + "path": "src/shapely/tests/geometry/test_decimal.py", + "sha256": "bac6b8377876691353196317ec38edc7403772b9ce4a0a9211acf1a88a60c1d4", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 9, + "row": 8438 + }, + { + "path": "src/shapely/tests/geometry/test_emptiness.py", + "sha256": "1483c7b1958b811a1e84aa6fa1ecc0b2a8e3cc99e8b0bef2d3c6be01b1e56c0e", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 8129 + }, + { + "path": "src/shapely/tests/geometry/test_equality.py", + "sha256": "578bda486283968968c1b9d16ea3867d4e07dcc38c96da6c2a6c13137364d7ad", + "language": "Python", + "lines": 273, + "truncated": false, + "block": 9, + "row": 10643 + }, + { + "path": "src/shapely/tests/geometry/test_format.py", + "sha256": "9191331bebde6fcef9eadefc696228da2605b099ad9875bc86a5a43710975bd7", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 8962 + }, + { + "path": "src/shapely/tests/geometry/test_geometry_base.py", + "sha256": "48f3b7ccf287ed6108380ae8680eb06d3666c7bbf3f1f79174bbf2d7787d7c3f", + "language": "Python", + "lines": 431, + "truncated": false, + "block": 9, + "row": 11172 + }, + { + "path": "src/shapely/tests/geometry/test_hash.py", + "sha256": "12d43269152d4d420bf008828f2bd50b8291250fc4deeaabfb85a7fe8696f807", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 6807 + }, + { + "path": "src/shapely/tests/geometry/test_linestring.py", + "sha256": "a2f289f4bc5c3864bfb404abb2de6299d6202d2f46c3cc9d625cd32d3aa24ede", + "language": "Python", + "lines": 232, + "truncated": false, + "block": 9, + "row": 10138 + }, + { + "path": "src/shapely/tests/geometry/test_multi.py", + "sha256": "65ac5cd4c9634e4a71f36c92465b1444c7181fea60d5898f87d026fe4d88e7da", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 9, + "row": 6516 + }, + { + "path": "src/shapely/tests/geometry/test_multilinestring.py", + "sha256": "55de6861387450fde36f9b89b549ce523105be24dd81d4471392cecb3d4f563c", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 9, + "row": 8422 + }, + { + "path": "src/shapely/tests/geometry/test_multipoint.py", + "sha256": "e899ef83bd500dc1523f223d4d09c56cc741e8ff8fdff3d7974991fa8278c690", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 8627 + }, + { + "path": "src/shapely/tests/geometry/test_multipolygon.py", + "sha256": "f044819b2c08f33b986d360a6b61d49c8ae78680d1fb2eea7f743e0be035d368", + "language": "Python", + "lines": 189, + "truncated": false, + "block": 9, + "row": 9833 + }, + { + "path": "src/shapely/tests/geometry/test_point.py", + "sha256": "d7c5a7d743311ff62f5317576c22c773b2f60c44b11815b15314e3949e6d87ce", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 9, + "row": 9593 + }, + { + "path": "src/shapely/tests/geometry/test_polygon.py", + "sha256": "bcb401e1207d7281a0b313141678f71a471394ede768f2fdf30f2234699519a9", + "language": "Python", + "lines": 467, + "truncated": false, + "block": 9, + "row": 11524 + }, + { + "path": "src/shapely/tests/legacy/conftest.py", + "sha256": "16f436c7e43664f304990257c17d2f29a28c58b9bd3a717b9cddd4b12122f9b0", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6534 + }, + { + "path": "src/shapely/tests/legacy/test_affinity.py", + "sha256": "86d66a69a236c62b17632f941c68d635f37778357877a0a08b887c7ce3c4007b", + "language": "Python", + "lines": 308, + "truncated": false, + "block": 9, + "row": 11187 + }, + { + "path": "src/shapely/tests/legacy/test_box.py", + "sha256": "75650518aabf22dc50370eb5dc83ea90026ed2f01b08a0d289736d5df694ef22", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6744 + }, + { + "path": "src/shapely/tests/legacy/test_buffer.py", + "sha256": "04536523e745edfd396a82d494c678ec7862d50f8ed1af0a9f73a97b5efa1312", + "language": "Python", + "lines": 173, + "truncated": false, + "block": 9, + "row": 10036 + }, + { + "path": "src/shapely/tests/legacy/test_cga.py", + "sha256": "82313dff85ea244317dd0bca8ad0d6f4e28cbea1e4bd3d112ecba434da31b5f4", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7511 + }, + { + "path": "src/shapely/tests/legacy/test_clip_by_rect.py", + "sha256": "43d6e01e51711a7646fb2aadb69bf4aa75966c287c90d58bee24aa3c9653007d", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 9, + "row": 9137 + }, + { + "path": "src/shapely/tests/legacy/test_create_inconsistent_dimensionality.py", + "sha256": "5abf2b460eb4e77b956a8e1d3df3b6ecc78ce3472030679801ee454d56a8cf95", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 9, + "row": 10917 + }, + { + "path": "src/shapely/tests/legacy/test_delaunay.py", + "sha256": "4ee6e33736d3c628fd37d543457f4fa3fdcca71cada27902a00131ab9695691b", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6937 + }, + { + "path": "src/shapely/tests/legacy/test_empty_polygons.py", + "sha256": "a4d8e5d04556ba985e9384cf1c7ab274fab5d09a889900b4cbdeb77ab2f92bb1", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6815 + }, + { + "path": "src/shapely/tests/legacy/test_equality.py", + "sha256": "1e5bce44c7eb11d9ae3c88bcf0ddbb99176a99e1a5b92edae5cbfb543a4dff60", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 9, + "row": 6865 + }, + { + "path": "src/shapely/tests/legacy/test_geointerface.py", + "sha256": "740b2e39949a553663597aae2e50b46c0eccb9f43cf91afaec9ec559009f8f8a", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 8896 + }, + { + "path": "src/shapely/tests/legacy/test_invalid_geometries.py", + "sha256": "e8275ab3567602ee990ea8ceecb3514d4d34db2ddf2c7bcf4c5b459c198ce876", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 6991 + }, + { + "path": "src/shapely/tests/legacy/test_linear_referencing.py", + "sha256": "0811d4d525ce1e8afb58a1b0c35666a1280ba9ad10b2e85f54f2b6d5a88dbf46", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8475 + }, + { + "path": "src/shapely/tests/legacy/test_linemerge.py", + "sha256": "ea3ca825b8f564ebd16ea156e8273b6d2f46ec31c290a37eb3101488032896c4", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7377 + }, + { + "path": "src/shapely/tests/legacy/test_locale.py", + "sha256": "7312b891996fa79a878f2d59371d49c348b3dbe6d3b66eef85e5a39e270f0236", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7315 + }, + { + "path": "src/shapely/tests/legacy/test_make_valid.py", + "sha256": "a9956f278f8de934ab273f8bc4bd15f0737f73fb37098b620b345f6caff1971b", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6642 + }, + { + "path": "src/shapely/tests/legacy/test_mapping.py", + "sha256": "096ab7cb9512ebd3ceb7c77fab53c584c272e40639e1f025e2e303b1b3101f8b", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6583 + }, + { + "path": "src/shapely/tests/legacy/test_minimum_clearance.py", + "sha256": "b979c1a8c8ac533e73828640b2eadf8b3b0f1aeb60af6bbadf2e81aa6a80f464", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6821 + }, + { + "path": "src/shapely/tests/legacy/test_ndarrays.py", + "sha256": "e7fb07796389e3daede35a4b9798f8d486d61430dc496d24005aad0b8e632a45", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 9, + "row": 7288 + }, + { + "path": "src/shapely/tests/legacy/test_nearest.py", + "sha256": "7971df1d003493571460d727f56bcbf52a67c210a315bd8278dd8d00c1d0d0cd", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6637 + }, + { + "path": "src/shapely/tests/legacy/test_operations.py", + "sha256": "45885fabe396348e7346eabe44db83687b760e69fcc97eb02b5c987a325a4c06", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 9, + "row": 9201 + }, + { + "path": "src/shapely/tests/legacy/test_operators.py", + "sha256": "6968c68073a62e6e89c76d41891f403c116890be21c4eac2d48458f181e8d105", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 7872 + }, + { + "path": "src/shapely/tests/legacy/test_orient.py", + "sha256": "8b683621ecf809ebb5211267cc0d38852e8530ea3ad865be8fde7acddef13aa6", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 9, + "row": 8819 + }, + { + "path": "src/shapely/tests/legacy/test_parallel_offset.py", + "sha256": "1918896b8f30dbecfb3570d5823ca1e703d30adfe541983997f6f56c4c436785", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 8109 + }, + { + "path": "src/shapely/tests/legacy/test_persist.py", + "sha256": "e2852e23de770dc447651bc90016a7c37f222e126bfcac804cbe76b753eddc18", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7667 + }, + { + "path": "src/shapely/tests/legacy/test_pickle.py", + "sha256": "17cd039b510379bc3a69493a12979cfadedcd604a8aa9c3869941cbe8a368bf8", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8153 + }, + { + "path": "src/shapely/tests/legacy/test_polygonize.py", + "sha256": "4137b716e264dfdeee26c7a55b3c37183b4f3d8a3f9fc41bd74166abe90efcfe", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7420 + }, + { + "path": "src/shapely/tests/legacy/test_polylabel.py", + "sha256": "29df6ea15b38d6eaac32d704660fb48bdc30c00b55a007ab051ec86d42b7388d", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8601 + }, + { + "path": "src/shapely/tests/legacy/test_predicates.py", + "sha256": "acaf6bb954fab6a5ac4c4476d6d24a332d7ef6273af178062810464537935158", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 8496 + }, + { + "path": "src/shapely/tests/legacy/test_prepared.py", + "sha256": "2262c11275e4d192592deea3707b7184d241809acaf46bb043303d06d71dbf1f", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 8213 + }, + { + "path": "src/shapely/tests/legacy/test_products_z.py", + "sha256": "0ab37de73fbcb25dc9efa619134e44e6d62f30bae11834e9fd18af6db95bab98", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 9, + "row": 6576 + }, + { + "path": "src/shapely/tests/legacy/test_shape.py", + "sha256": "31cbfad36ecdac0f636087db09b72003debc1e31d697909fe2d7fc72ae2a196a", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 7752 + }, + { + "path": "src/shapely/tests/legacy/test_shared_paths.py", + "sha256": "299d4533ab363b7d79be8230d5738496ec0c9dfce1c8b77dd725e7a4d9a7b7b6", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7463 + }, + { + "path": "src/shapely/tests/legacy/test_singularity.py", + "sha256": "188fbfebbddcd7c48802ad544194f764e9df7926e1044b86018802bb33e5761a", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6571 + }, + { + "path": "src/shapely/tests/legacy/test_snap.py", + "sha256": "7c25806a778e427e6bc6667249d88d23b2c3c2d65aa9f60e2c6b1ea0961157a4", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 9, + "row": 6887 + }, + { + "path": "src/shapely/tests/legacy/test_split.py", + "sha256": "e4f4f3ff632d4bb327fdb9b50200b788cf555ffdf28551d694adf0ead2289084", + "language": "Python", + "lines": 331, + "truncated": false, + "block": 9, + "row": 11237 + }, + { + "path": "src/shapely/tests/legacy/test_substring.py", + "sha256": "d528a6313695737e2e93ce329554ab889371e13d808746b179bcfd2056c565a5", + "language": "Python", + "lines": 220, + "truncated": false, + "block": 9, + "row": 11907 + }, + { + "path": "src/shapely/tests/legacy/test_svg.py", + "sha256": "a3f31c1c2f3542a69baa40ef058b21c38d25399b35bc83b80d9b44b1aa7df3c3", + "language": "Python", + "lines": 213, + "truncated": false, + "block": 9, + "row": 10475 + }, + { + "path": "src/shapely/tests/legacy/test_transform.py", + "sha256": "76b6837b98a6461a8ea434133bdefb7cdc21eb214bfff2c659f033780e10212e", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 9151 + }, + { + "path": "src/shapely/tests/legacy/test_union.py", + "sha256": "f67e497f013f47b112c6a22c9cf31a1c20448f2703d53f10c88d59d1b46ab82f", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 7983 + }, + { + "path": "src/shapely/tests/legacy/test_validation.py", + "sha256": "2f7decda98da83d47f1e80dafa6506d6810e65c2bea5ec619d01d7e31959bba2", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 9, + "row": 6470 + }, + { + "path": "src/shapely/tests/legacy/test_vectorized.py", + "sha256": "1074c8e0a625dd1025cccd8ef41b997d12efda4c739eeb49b4658cb9b25897c8", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 9, + "row": 8935 + }, + { + "path": "src/shapely/tests/legacy/test_voronoi_diagram.py", + "sha256": "cf764af15934364302b4b1b9d2f3d2bd0b9c0406931f0dc61fdb24d65d9bf2a1", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9105 + }, + { + "path": "src/shapely/tests/legacy/test_wkb.py", + "sha256": "331a5ea618669402215125d622f90c2d6ecab6876b52905b513812cbcb77ae4e", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 9, + "row": 9680 + }, + { + "path": "src/shapely/tests/legacy/test_wkt.py", + "sha256": "fd5ce24f8b386ff1b616a71e92baa66eb79743789b44632432ccdba32c3e0d58", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 7636 + }, + { + "path": "src/shapely/tests/legacy/threading_test.py", + "sha256": "956c810cec32b0c6a83e8939c46bc336fec2527e6390474352eddb20b518ab30", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7085 + }, + { + "path": "src/shapely/tests/test_constructive.py", + "sha256": "eeb71827ba0422525961c1b37aef87bdc4a4377b42a62089c64c668775aca217", + "language": "Python", + "lines": 1869, + "truncated": false, + "block": 9, + "row": 12556 + }, + { + "path": "src/shapely/tests/test_coordinates.py", + "sha256": "3e501228fc5187886edf68ae7737ce352355c4ee2f2520c7328d207ff42e9bae", + "language": "Python", + "lines": 488, + "truncated": false, + "block": 9, + "row": 11533 + }, + { + "path": "src/shapely/tests/test_coverage.py", + "sha256": "28a30a3d9ad19204992a1d9e506d550b1d298d09e9df1e06baec3c920bc545c8", + "language": "Python", + "lines": 520, + "truncated": false, + "block": 9, + "row": 11778 + }, + { + "path": "src/shapely/tests/test_creation.py", + "sha256": "6ca400c7a7438a4264dcf3151cc9c7affdc29deaad3d5f25a0e1ba2968d03ad4", + "language": "Python", + "lines": 771, + "truncated": false, + "block": 9, + "row": 12020 + }, + { + "path": "src/shapely/tests/test_creation_indices.py", + "sha256": "ae9c5ab9ee4ef3357276d11285a93a3d30d910663911caa6a218aeb3898bc79b", + "language": "Python", + "lines": 585, + "truncated": false, + "block": 9, + "row": 11750 + }, + { + "path": "src/shapely/tests/test_decorators.py", + "sha256": "f2296fc9c051f82cea97c3b3fa631d2a2e34c856aa2724e5dae1d2e5e06fea62", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 9, + "row": 8926 + }, + { + "path": "src/shapely/tests/test_geometry.py", + "sha256": "f861fd123a1cb31ded056262750b1db6cab5bf24b44859ad6fe64b7601c0c3ff", + "language": "Python", + "lines": 845, + "truncated": false, + "block": 9, + "row": 12112 + }, + { + "path": "src/shapely/tests/test_io.py", + "sha256": "228c17497a1d6c74ded697c78f7a7feac73d4f16ec583a48a7418e9919d1266e", + "language": "Python", + "lines": 1347, + "truncated": false, + "block": 9, + "row": 12493 + }, + { + "path": "src/shapely/tests/test_linear.py", + "sha256": "21b6f53eae0b24b4d322e07caa8dd543fb24ab8b147e6229b6dfe636ee3a7627", + "language": "Python", + "lines": 237, + "truncated": false, + "block": 9, + "row": 10421 + }, + { + "path": "src/shapely/tests/test_measurement.py", + "sha256": "5f45411c86d173d2e7f9ee6b9e0459f44c5d593f8b63977ba86dfd833820865a", + "language": "Python", + "lines": 368, + "truncated": false, + "block": 9, + "row": 10910 + }, + { + "path": "src/shapely/tests/test_misc.py", + "sha256": "3205326058ab089319e26277329fda2f061c45432ec5f2f2b77c085dffbb4549", + "language": "Python", + "lines": 228, + "truncated": false, + "block": 9, + "row": 10030 + }, + { + "path": "src/shapely/tests/test_plotting.py", + "sha256": "a67aba0917c704a652cf5435bcb023225961b7efb26660d79e04d740ebbc27cf", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 9091 + }, + { + "path": "src/shapely/tests/test_predicates.py", + "sha256": "1b54a0da18b7e93bfc8186c86355e333b979044d6f5c41fb7c83763bfaea457f", + "language": "Python", + "lines": 490, + "truncated": false, + "block": 9, + "row": 11519 + }, + { + "path": "src/shapely/tests/test_ragged_array.py", + "sha256": "dbf5e7544a3b160539c9480bf4bb4513f701e3754b6a4989e6686a9869a89798", + "language": "Python", + "lines": 667, + "truncated": false, + "block": 9, + "row": 11902 + }, + { + "path": "src/shapely/tests/test_set_operations.py", + "sha256": "3c19642f8a9df7b279cc02d952e6108121f5ec3bd35d9e57fa8c3215c4f4a974", + "language": "Python", + "lines": 503, + "truncated": false, + "block": 9, + "row": 11734 + }, + { + "path": "src/shapely/tests/test_strtree.py", + "sha256": "ab83c774ae7bd30fec251c32ffa3db0171e923357c1b55b5b09dcfbb7f37c470", + "language": "Python", + "lines": 1950, + "truncated": false, + "block": 9, + "row": 12587 + }, + { + "path": "src/shapely/tests/test_testing.py", + "sha256": "848e7186480a2316e1700c01c0d98c53f65e59ebe6ac26b0ebaec1d20fe332b5", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 8432 + }, + { + "path": "src/shapely/validation.py", + "sha256": "022bd86d8fbea62d9e57d855a1344078ec2d4baf66e12dfdc3ec25ddb45c3e84", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7489 + }, + { + "path": "src/shapely/vectorized/__init__.py", + "sha256": "e050c7c3ef8ab08f183e8b2f68476d991d78058a1de020b03ea7f00e6a5f8ad5", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 9, + "row": 8409 + }, + { + "path": "src/shapely/wkb.py", + "sha256": "41d40959703f0128b6af04200a8f34b15aa644189a6ba7677e6f6678e456b5d3", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 7877 + }, + { + "path": "src/shapely/wkt.py", + "sha256": "0262744aff843140ca60a5b15aa65b3ffcea8248f5391401703fb44e71f0cf20", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 7690 + }, + { + "path": "versioneer.py", + "sha256": "4477aad45fe07e320cb9354c9527cddf7a04cd5924dc7c7cc01812a2d7f217ee", + "language": "Python", + "lines": 2205, + "truncated": false, + "block": 9, + "row": 12615 + } + ] +} \ No newline at end of file diff --git a/manifests/76/github.com__ceadm__correlogram-uniformty-peak-count-area-left-of-zero.json b/manifests/76/github.com__ceadm__correlogram-uniformty-peak-count-area-left-of-zero.json new file mode 100644 index 0000000000000000000000000000000000000000..e90d3325e26ef7e6f929dfca9b14a62877978f06 --- /dev/null +++ b/manifests/76/github.com__ceadm__correlogram-uniformty-peak-count-area-left-of-zero.json @@ -0,0 +1,210 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ceadm/correlogram-uniformty-peak-count-area-left-of-zero", + "url": "https://github.com/ceadm/Correlogram-Uniformty-Peak-Count-Area-Left-of-Zero.git", + "host": "github.com", + "commit": "1ce9141968e05c8cf5b48fd1a04ce067c1493c59", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Analysis Execution/PlotPopulationMetricChanges.m", + "sha256": "b968dafdbd5f6cc9dc9f721be419a75e52823fbd330a541cdcf186c3aa36db73", + "language": "MATLAB", + "lines": 465, + "truncated": false, + "block": 9, + "row": 5907 + }, + { + "path": "Analysis Execution/Violin.m", + "sha256": "2a1d4ed2dd764eac1ac329e51cefc575d6eef9e66eb6144502ee3725ed981d2f", + "language": "MATLAB", + "lines": 716, + "truncated": false, + "block": 9, + "row": 5899 + }, + { + "path": "Analysis Execution/analyzeRecordingPlxFile.m", + "sha256": "577899d14e77cf3f318bd385b825f76bdba4c6ee2595968962b2715473886fae", + "language": "MATLAB", + "lines": 192, + "truncated": false, + "block": 9, + "row": 5703 + }, + { + "path": "Analysis Execution/calculateCorrelogramMetrics.m", + "sha256": "fca7f2ed3454046859696a370d9433d436722704be652569a68ad6f7ac869893", + "language": "MATLAB", + "lines": 361, + "truncated": false, + "block": 9, + "row": 5830 + }, + { + "path": "Analysis Execution/calculateRasterMetrics.m", + "sha256": "15e4dd47ba125ec0765949cd72a941f2cd3ea8e87cb82d92ad018f79336fe4fd", + "language": "MATLAB", + "lines": 105, + "truncated": false, + "block": 9, + "row": 5047 + }, + { + "path": "Analysis Execution/generateCorrelograms.m", + "sha256": "9e5b5284e21e09705813eec1491c939ae4388f4318cefd2c4a9b9577b2038ae2", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 9, + "row": 5419 + }, + { + "path": "Analysis Execution/getInjuryOrTreatmentIndicies.m", + "sha256": "0a8d1986c83b0d9592d01026b5c99b11e32593bd770eb6d85724ae1e1c12c35e", + "language": "MATLAB", + "lines": 505, + "truncated": false, + "block": 9, + "row": 5909 + }, + { + "path": "Analysis Execution/getRasters.m", + "sha256": "69eab04ab5e5f750d21dbcd34b285828fe7fe19d9d57420b3fed742e026d0fad", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 9, + "row": 4985 + }, + { + "path": "Analysis Execution/hatchfill.m", + "sha256": "e112f53a5e8017d0f845ea1a386039cb76c865875b41b2a1167bd8855f450889", + "language": "MATLAB", + "lines": 406, + "truncated": false, + "block": 9, + "row": 5628 + }, + { + "path": "Analysis Execution/plotCorrelograms.m", + "sha256": "78b28e7bbdaf453e8669406cb8c9da277f1ec6f498a089dadfecaabacc811fbb", + "language": "MATLAB", + "lines": 117, + "truncated": false, + "block": 9, + "row": 5303 + }, + { + "path": "Analysis Execution/plotStatsInEachRegion.m", + "sha256": "a6ad8ff214385be8c24d6a6ee4019812d529c604ecfcb2ee98b1d615b84dd831", + "language": "MATLAB", + "lines": 300, + "truncated": false, + "block": 9, + "row": 5774 + }, + { + "path": "Analysis Execution/removeBadSignals.m", + "sha256": "d4f1ecfa5bf8c201558dfa7a39d26d3fc9a516baf59341d5937ad76ce550f564", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 9, + "row": 4818 + }, + { + "path": "Analysis Execution/removeJunkRecordings.m", + "sha256": "5a7f0e3637a07bde9b5dd3053f10b38e5a46c94711a5ce4126df9d7073cf15e6", + "language": "MATLAB", + "lines": 90, + "truncated": false, + "block": 9, + "row": 5257 + }, + { + "path": "Analysis Execution/summarizeCorrelograms.m", + "sha256": "646dcd5d279a63eb4351e25d49fad61c3a22ea41ece5e5d4414b3e6437046927", + "language": "MATLAB", + "lines": 987, + "truncated": false, + "block": 9, + "row": 5984 + }, + { + "path": "Analysis Execution/violinplot.m", + "sha256": "8ff0bcd6e194cdec88f6bfdbd4372bd4732e63647a2ac220483fff5eb01be935", + "language": "MATLAB", + "lines": 198, + "truncated": false, + "block": 9, + "row": 5410 + }, + { + "path": "Function to Read plx Files/PlexonFiles.h", + "sha256": "c4e1ecd0dda29e875a16e3522d77ad2bac2f0a7e76bbe98735c10e4ceba8143b", + "language": "C/C++", + "lines": 178, + "truncated": false, + "block": 9, + "row": 1697 + }, + { + "path": "Function to Read plx Files/build_readPLXFileC.m", + "sha256": "d259b707c9b51c0357a3ec7baa7b01c8d958141df2d30581a2ce07191a74dc8a", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 9, + "row": 4301 + }, + { + "path": "Function to Read plx Files/readPLXFileC.c", + "sha256": "083cf66d4acbda84bcd5b97c8beef4477c11517bc383aee6e2fb2320d6bf05f2", + "language": "C", + "lines": 1919, + "truncated": false, + "block": 9, + "row": 153 + }, + { + "path": "LICENSE", + "sha256": "0a386ab91daac204f5ff0875d569432bd7caedcf427ea54a374708e5adcad2e8", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2749 + }, + { + "path": "Main_AnalyzeRecordingData.m", + "sha256": "9f0c4c3c9be6809755bfe242cbb6a76fdc40ebff17bc25f1c66b016ff12d6acb", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 9, + "row": 5441 + }, + { + "path": "PlotCorrelogramGeneration.m", + "sha256": "e869e41d326a53de8e86acc3698e5e43c03ac9fcdc1ddc34994b8fe2101c54b1", + "language": "MATLAB", + "lines": 124, + "truncated": false, + "block": 9, + "row": 5311 + }, + { + "path": "README.md", + "sha256": "cb2a3223c8dd3762e85ec17347eae452a4c480e26db1a2d4330e67e7f291775f", + "language": "Text", + "lines": 4, + "truncated": false, + "block": 9, + "row": 14472 + } + ] +} \ No newline at end of file diff --git a/manifests/76/github.com__space-physics__iri2020.json b/manifests/76/github.com__space-physics__iri2020.json new file mode 100644 index 0000000000000000000000000000000000000000..846bcc757a95da3907be92f20cb6cad911263e5e --- /dev/null +++ b/manifests/76/github.com__space-physics__iri2020.json @@ -0,0 +1,147 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/space-physics/iri2020", + "url": "https://github.com/space-physics/iri2020", + "host": "github.com", + "commit": "8b6ab9ea3e30fd0c0ed46f556d5d0854c53b20ee", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "abe3901fa092b2d99a46ba56b3125ab6b57e23e52a44fd28d78f0a8cf1a2c97b", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2805 + }, + { + "path": "README.md", + "sha256": "d864ed8aa7c980eaac3c104170fb9bce2031828956b839a332f09d5e6fa52c9a", + "language": "Text", + "lines": 81, + "truncated": false, + "block": 9, + "row": 14559 + }, + { + "path": "src/iri2020/__init__.py", + "sha256": "1e6fdb71c8e66a48ba28ad7d429d099b4a6b5a07c88a88b926fcdd67d7578a56", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6369 + }, + { + "path": "src/iri2020/altitude.py", + "sha256": "734a5e5808006debc414d1c2e96b77ec2e3577cc59618113031318fbc22dfd06", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7001 + }, + { + "path": "src/iri2020/base.py", + "sha256": "ec22246561e5cd3f57dbe0ab8f809ef39c5afdfd525c6a29d4b97b37fd45c0ed", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 9, + "row": 8323 + }, + { + "path": "src/iri2020/build.py", + "sha256": "2b9ec03437f0b7b00554a65b9dc95021485da58d3ec49ef871e41787c88505b1", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6743 + }, + { + "path": "src/iri2020/data/__init__.py", + "sha256": "18186c308135215b9440b9940c12a3b42051ec648b73512c4549b27ffc00ae35", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6124 + }, + { + "path": "src/iri2020/latitude.py", + "sha256": "0dc74badc1453dbfe7f8f4e2ea9e59805503f9e324f0cbde006e689a965a03d1", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7381 + }, + { + "path": "src/iri2020/plots.py", + "sha256": "29bbb18f6b3e35fab2cc0ffcc8d856cc0190711d4084728cb9697482596c2cab", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 9, + "row": 9034 + }, + { + "path": "src/iri2020/src/iri_driver.f90", + "sha256": "674bd34519bf37b62f5572db50cc46ab25aad83abe6523074d0b50edcdc6a32d", + "language": "Fortran", + "lines": 108, + "truncated": false, + "block": 9, + "row": 1942 + }, + { + "path": "src/iri2020/src/test.f90", + "sha256": "776bd797f9f5fcd945ee2032912445abea58117dcde80df97bf3042bbd10695d", + "language": "Fortran", + "lines": 62, + "truncated": false, + "block": 9, + "row": 1941 + }, + { + "path": "src/iri2020/tests/test_mod.py", + "sha256": "581e7b87915c2daddf2a6d7ffe2bfb9cba2e948d2617ee74f5b26f462a16997d", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6685 + }, + { + "path": "src/iri2020/tests/test_scripts.py", + "sha256": "66e50ca2bfa9655fd01f8124769312bc7737432585a5438f2d509af8fe95e096", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6572 + }, + { + "path": "src/iri2020/times.py", + "sha256": "dd2eea22759765b86b582674cd49e85674fed1442eec98eddcee600d4a84684f", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7242 + }, + { + "path": "src/iri2020/vprofile.py", + "sha256": "719f715d835f2b9609f6c973069d207db85ccd95608184daa16b0454cd623222", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 7817 + } + ] +} \ No newline at end of file diff --git a/manifests/77/github.com__nikhayes__fibphoflow.json b/manifests/77/github.com__nikhayes__fibphoflow.json new file mode 100644 index 0000000000000000000000000000000000000000..bb5274f0099f8585dc31bc9d1a8c5452816e2540 --- /dev/null +++ b/manifests/77/github.com__nikhayes__fibphoflow.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/nikhayes/fibphoflow", + "url": "https://github.com/nikhayes/fibphoflow", + "host": "github.com", + "commit": "dde086457be2aa31925fbf7891b86629dd748603", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "98393c36d2c8b6aadf4a17bbc5f1948b7f10e851bbda52ac840891051785a22d", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2762 + }, + { + "path": "README.md", + "sha256": "5d203ae100afd3eff2b3b5efdab298d5099d5df4ce7f1f09c4606d6c2d39502d", + "language": "Text", + "lines": 77, + "truncated": false, + "block": 9, + "row": 14625 + }, + { + "path": "src/fibphoflow.py", + "sha256": "e4375e00bef7b346ab6bf2427d156f1b0993c5377963d095836413ef3067a4c9", + "language": "Python", + "lines": 753, + "truncated": false, + "block": 9, + "row": 12390 + }, + { + "path": "src/fibphoflow_config.py", + "sha256": "01fcf3a11206c1569bc74d7ed0839d04ac5108fc6477b52b1715445b3ee787f5", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6504 + }, + { + "path": "tutorial/tutorial_project.py", + "sha256": "2b6d5363dfafbff616ac72ae7fb1685d1d046b3d01bd653b2e9fc167cb937d58", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 8613 + } + ] +} \ No newline at end of file diff --git a/manifests/77/github.com__voxelmorph__voxelmorph.json b/manifests/77/github.com__voxelmorph__voxelmorph.json new file mode 100644 index 0000000000000000000000000000000000000000..f1d6c61337bea5496701ac345fe8225e9e56fa7d --- /dev/null +++ b/manifests/77/github.com__voxelmorph__voxelmorph.json @@ -0,0 +1,534 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/voxelmorph/voxelmorph", + "url": "https://github.com/voxelmorph/voxelmorph", + "host": "github.com", + "commit": "c4155e1baf04bc8f1774775b23a6027b58b37e00", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE.md", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.md", + "sha256": "43070e2d4e532684de521b885f385d0841030efa2b1a20bafb76133a5e1379c1", + "language": "License", + "lines": 201, + "truncated": false, + "block": 6, + "row": 2066 + }, + { + "path": "README.md", + "sha256": "846480a468a7eced020e022c7620dead0f815bef352db1a2df2dbf50968e990a", + "language": "Text", + "lines": 217, + "truncated": false, + "block": 9, + "row": 14729 + }, + { + "path": "docs/site/assets/javascripts/bundle.92b07e13.min.js", + "sha256": "51e25d438f875f90c313e2f5a6ca1a458b4eca94e8f3dddd11f6ac3971f4da2f", + "language": "JavaScript", + "lines": 16, + "truncated": false, + "block": 9, + "row": 2128 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.ar.min.js", + "sha256": "89a1dcb094a8491d968c151ab254a03195c87ff2adaa2408c769928284847125", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 5, + "row": 15221 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.da.min.js", + "sha256": "2a12734048eae74e0a05e5c108fdf24c2b71dfcd8da712336ca9e3d27ab92956", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 5, + "row": 14801 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.de.min.js", + "sha256": "bcaa7c5c19bc730c05bb91e22ae0e386e1ac4a0580c42b7d94f9b8757aadadab", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 5, + "row": 14895 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.du.min.js", + "sha256": "452da04fe449b9c65c61384fec582dc63824bd4e559fae2c3926a7790b68e976", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 5, + "row": 14900 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.el.min.js", + "sha256": "a6fd5cbbb21d127407bc31c6c4298bf92ec7e1496a1ea83d5e4add14325a0c21", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 5, + "row": 15185 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.es.min.js", + "sha256": "dec4ec90bd6f478ca3e65636a8e3fedf512b23d01a51a01d7e7822f67ebbaaf8", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 5, + "row": 15115 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.fi.min.js", + "sha256": "681541fcf5b1987ad8b00766e9c06389ecf99c3d7ae817fa891f923f691b8668", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 5, + "row": 15046 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.fr.min.js", + "sha256": "4dd56aa2551e770ad26ef4b85092cd31447671e0e84b39514278547f54177377", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 5, + "row": 15086 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.he.min.js", + "sha256": "3f7d5c28ada94d78c9bc8041e271c355800ba36dbab98ad95d57b6bc25993621", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 5, + "row": 14951 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.hi.min.js", + "sha256": "631fff52e3623f2dfba35af076c6b8b5a450eeffe30a5cfac7458dab77cbe0a6", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 5, + "row": 14698 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.hu.min.js", + "sha256": "876c969bbf4a2b84738f4e0a14922ee331cb7c2193a621f65db7f836fdd33a38", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 5, + "row": 15049 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.hy.min.js", + "sha256": "0efbcb902bdb7ec0dddffa5e2ba347b74c49ffc5f43fd73ffed83528eba12e95", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 5, + "row": 14370 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.it.min.js", + "sha256": "00a5073df2e922e5fded1c5a4d4011aec02472ab9d9182a7c6508d60b625c453", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 5, + "row": 15104 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.ja.min.js", + "sha256": "c4fded308f633681a6ed53b6c10d8ca5916fdfd50f6b82ec914d725be0cb8bd6", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 5, + "row": 14563 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.jp.min.js", + "sha256": "04114edc36dc114edce5afbb3c7f795f45c77d8673c1edcdca5675ddab5d5199", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 5, + "row": 13649 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.kn.min.js", + "sha256": "a064d0d7438334957a442b626140fb72f4ede8ebe17eb5c4e25682d87c88bbf8", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 5, + "row": 14713 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.ko.min.js", + "sha256": "73d1bdb1de4aef6c5920f516924c5ab1c440db50a6f5c6126bd0fb7cf5d37664", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 5, + "row": 14994 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.multi.min.js", + "sha256": "9761f475ae79f36420ff714df9950efb264effcf9230efd55b511a0de899e979", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 5, + "row": 14130 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.nl.min.js", + "sha256": "399ef26d61ed2d5806f58ea723dfaca09f4a7c9b51e315bdd17482c8e3013a3e", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 5, + "row": 14891 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.no.min.js", + "sha256": "57f9db9290f9ed36080755f53ee342a04f55a5954e4add915d1c301a37464573", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 5, + "row": 14812 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.pt.min.js", + "sha256": "3a25d2abaa23063cf13fc56c19ae4cc5050cb6215115e9d08f4a6f4b78780067", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 5, + "row": 15069 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.ro.min.js", + "sha256": "cfa26a8ea4293d81e8547ba2321d703a0fe9881f0721fca5f33a3f80bf156ee9", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 5, + "row": 15091 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.ru.min.js", + "sha256": "50ef3c0fab4a3f2d260e8973c63363aa0dcf02b559ea9d11d5f02b6197585c17", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 5, + "row": 15074 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.sa.min.js", + "sha256": "41c558a4355c3eae8f0a27ae870712738f14b0bd88038042ac8ab8b411e5817f", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 5, + "row": 14824 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.stemmer.support.min.js", + "sha256": "2e7213605846a18014ec750910cb18a8a4c60bb23200103b3fad9ef27b10c705", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 5, + "row": 14722 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.sv.min.js", + "sha256": "942b165bcc8218e3246fc4735af9b1c2f66514366d0000be051bf1bb896d413e", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 5, + "row": 14794 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.ta.min.js", + "sha256": "17a32dc49c27c9d27945625a7e8d066d42f64ea1ce5a5b34de427723fbf9ae2a", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 5, + "row": 14577 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.te.min.js", + "sha256": "079c8fcf028aeef388e98ec8607c8ea50ba9660c46797c8a119d05f8f8205838", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 5, + "row": 14566 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.th.min.js", + "sha256": "348461266843e316b26820004a96d3fd87a1579829d244ce510c17293eef0439", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 5, + "row": 14288 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.tr.min.js", + "sha256": "e8bf57b1033b8bd92ea04a94c533015aa1a7f0a8d6830194b974e94e1e4aca3c", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 5, + "row": 15186 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.vi.min.js", + "sha256": "2e39c3fd7305f6e66fc0424796a7696cb8e36dc0f5c3a83ea1bc44dfe3fecb56", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 5, + "row": 14103 + }, + { + "path": "docs/site/assets/javascripts/lunr/min/lunr.zh.min.js", + "sha256": "d8c5b72c36ec9c3197602546e9ba5b57ada3f725d564a551bf16eabafb548e88", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 5, + "row": 14540 + }, + { + "path": "docs/site/assets/javascripts/lunr/tinyseg.js", + "sha256": "1b044c239610ef65fceff6039567442bb1692d413f5ee8686fee81b1a3067761", + "language": "JavaScript", + "lines": 206, + "truncated": false, + "block": 5, + "row": 15304 + }, + { + "path": "docs/site/assets/javascripts/lunr/wordcut.js", + "sha256": "7d2c264191b83d37a9c4e48276d0e2b076b5e5d5f225bc18ead1e8c54d009405", + "language": "JavaScript", + "lines": 186, + "truncated": true, + "block": 5, + "row": 15600 + }, + { + "path": "docs/site/assets/javascripts/workers/search.973d3a69.min.js", + "sha256": "fbe3b55a59bf786d521fb5282232c7dcf7357116e707ae18adce54de73195497", + "language": "JavaScript", + "lines": 42, + "truncated": false, + "block": 5, + "row": 15406 + }, + { + "path": "scripts/register.py", + "sha256": "01917af9a83a6069ee932cf33ddad8bff7890580675f21366fd6ce1fa3dfcabc", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 8927 + }, + { + "path": "scripts/train.py", + "sha256": "e8979d1cabf5646ec27b61eda89e05cfbd4f050cda800ef8e7c37e6ae9d19823", + "language": "Python", + "lines": 254, + "truncated": false, + "block": 9, + "row": 10501 + }, + { + "path": "setup.py", + "sha256": "449e0d087f3419ad578e29f57924461b186cd59b045f41264bcabce90003a034", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 9, + "row": 7227 + }, + { + "path": "tests/test_functional.py", + "sha256": "d228f1ec9db16e2166aac3eefdff79483db88e93aaed03cbfa028c7e38e929ad", + "language": "Python", + "lines": 1402, + "truncated": false, + "block": 9, + "row": 12459 + }, + { + "path": "tests/test_imports.py", + "sha256": "971629642afd14b5d8f68a34fd58c4b4450aa8f1e16c0fe9d82fe6815b086cda", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6099 + }, + { + "path": "tests/test_integrate_disp.py", + "sha256": "db8b0738b2ee84dcf69f00879a52d12f338c60384970a809aea2221917343d42", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 8236 + }, + { + "path": "tests/test_integration_compatibility.py", + "sha256": "d4897d88b0b51ae8bd0f0e38f5fbab33b0d6e2ed1fa563084572fe36523a4cbd", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 9, + "row": 10279 + }, + { + "path": "tests/test_models.py", + "sha256": "0e6dda91f92f62144d5ab06a7341af89f8ad00c09de57fc89e1d3dab480b8ce9", + "language": "Python", + "lines": 245, + "truncated": false, + "block": 9, + "row": 10328 + }, + { + "path": "tests/test_modules.py", + "sha256": "864a779ca3acd773fdfb744e0b048933264f65523fbe4bd75ca14f7f1660fcaf", + "language": "Python", + "lines": 444, + "truncated": false, + "block": 9, + "row": 11699 + }, + { + "path": "tests/test_neurite_integration.py", + "sha256": "8dbacb1be8776d353ec50b827cc94a7110446e0b7837d0cc77fbba75287d6a3c", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 9, + "row": 9723 + }, + { + "path": "voxelmorph/__init__.py", + "sha256": "7fe96fbeb6f77542fdee6352d6ff5fcc8b94fe77e370e8f138e96a6063ec4a2a", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7603 + }, + { + "path": "voxelmorph/functional.py", + "sha256": "e88780f98c19bf4bc37c6f72f41e16787169a8c9f8daa68297ab2c6a2ead153d", + "language": "Python", + "lines": 1344, + "truncated": false, + "block": 9, + "row": 12472 + }, + { + "path": "voxelmorph/nn/__init__.py", + "sha256": "1d0db54c6198458ab505b4049c7ab8823a15be5d4ed7c4033cae7bd5692a2546", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 9, + "row": 6834 + }, + { + "path": "voxelmorph/nn/functional.py", + "sha256": "7d9bf70133e320315649604d8ee5764de56aa06a504b64607a9a32ab8886d7d1", + "language": "Python", + "lines": 880, + "truncated": false, + "block": 9, + "row": 12244 + }, + { + "path": "voxelmorph/nn/losses.py", + "sha256": "3451aed9a40f5a14741ab6d331bc84a3f05fa997ffdc57926202c55123f121f0", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 9, + "row": 8009 + }, + { + "path": "voxelmorph/nn/models.py", + "sha256": "274b7860c1e578ed24b7fd86ad283961a42090ee83a82445b04d8404349d4622", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 9, + "row": 11054 + }, + { + "path": "voxelmorph/nn/modules.py", + "sha256": "009e2f9fdf2cc8792e48c08c816870b5e85f4aabed76e2381e9253ceb127ec08", + "language": "Python", + "lines": 283, + "truncated": false, + "block": 9, + "row": 10809 + }, + { + "path": "voxelmorph/py/__init__.py", + "sha256": "4001a38b25331334c3d1831881c60c09541847270aa5f8c0c4fc2a80cc0cae2e", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6527 + }, + { + "path": "voxelmorph/py/generators.py", + "sha256": "c2d0dd09d8bfd4602a83aefed6117e4f18b83a69f10d3ff50d043bbd7efa824e", + "language": "Python", + "lines": 469, + "truncated": false, + "block": 9, + "row": 11762 + }, + { + "path": "voxelmorph/py/utils.py", + "sha256": "e6a0f8057d11348a780a42b5ed4563419866b8208ebcd5f49e0e21de8b2317e2", + "language": "Python", + "lines": 535, + "truncated": false, + "block": 9, + "row": 11655 + } + ] +} \ No newline at end of file diff --git a/manifests/77/zenodo__11211435.json b/manifests/77/zenodo__11211435.json new file mode 100644 index 0000000000000000000000000000000000000000..cd11fb751cd51bd072d0c16e6f6b4181f9f9b159 --- /dev/null +++ b/manifests/77/zenodo__11211435.json @@ -0,0 +1,147 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:11211435", + "url": "10.5281/ZENODO.11211435", + "host": "zenodo.org", + "commit": "", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "fbcb5189ba2f83e7ad66ad0f20b7123a63c8c1ff0d7ff93d2a4800dcdca8b468", + "language": "Text", + "lines": 21, + "truncated": false, + "block": 9, + "row": 14462 + }, + { + "path": "figures.ipynb", + "sha256": "6ef5c146808f071c75ae37a1dfff7b064f380282e77cfd53e71848d2b17bdac6", + "language": "Jupyter", + "lines": 177, + "truncated": false, + "block": 9, + "row": 2365 + }, + { + "path": "marshall_intrinsic_units/__init__.py", + "sha256": "fce5d475b62df71fabe928d1ee1b20d325eab0fc699593877421c799954fcb38", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8445 + }, + { + "path": "marshall_intrinsic_units/marshall_intrinsic_units.py", + "sha256": "053c7c48efe4ef478fe8f4b669d836550a169ac914c667abf81fde3b018d075b", + "language": "Python", + "lines": 513, + "truncated": false, + "block": 9, + "row": 11647 + }, + { + "path": "scripts/run_bbx_macro.py", + "sha256": "cac29983d2c85e48c75869acdc7d3d655fa463a3f6e90e8e95707295cbe557e5", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6388 + }, + { + "path": "scripts/run_bbx_micro.py", + "sha256": "f0b422d1ba5e271cf29915c568e010d9a3c0f55c59850dbd35225cb635d26296", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6558 + }, + { + "path": "scripts/run_bu_micro.py", + "sha256": "1834789c24093c39e59b9b5dded756bebb6221de43f79215b6ad5f53ff3f2f1c", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 9, + "row": 6475 + }, + { + "path": "scripts/run_cg_macro.py", + "sha256": "942bd89ea567f6e8ca591fc3424493c929234cc597d991b45bc42f66fd19e982", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6392 + }, + { + "path": "scripts/run_cg_micro.py", + "sha256": "d396ec87cd8c164ea0a265d6fdf40694f3944a71e913dbe674a77770fb7ae451", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6393 + }, + { + "path": "scripts/run_min_macro.py", + "sha256": "6fe9257e37b46e85bbedcd63cf75b5f3dae2b08aa203ef98e8a1c45a047956a1", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6385 + }, + { + "path": "scripts/run_min_micro.py", + "sha256": "9fba28324e1589e0fb5f3defebba65f8a098416525362a08eb8943028ab0cafb", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6386 + }, + { + "path": "scripts/run_sfn_micro.py", + "sha256": "90c604b96b99ac21a8126dc1dee3a67c8349e1f8bd1b352eb15474db27b64d1d", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6411 + }, + { + "path": "scripts/run_sfnn_micro.py", + "sha256": "3f0d72c78038db6854d9ca470e30ba073df808253655b7f409bba77c333840ed", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6420 + }, + { + "path": "scripts/run_sfs_micro.py", + "sha256": "c13931a6a480c52519230a36afc2696a9d4c592a682ec4dbe5a9ec784dc5f5c0", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6413 + } + ] +} \ No newline at end of file diff --git a/manifests/7a/github.com__ncip__ctat-mutations.json b/manifests/7a/github.com__ncip__ctat-mutations.json new file mode 100644 index 0000000000000000000000000000000000000000..5ca832c00168ebd4e478c24c2d69f00c60cab100 --- /dev/null +++ b/manifests/7a/github.com__ncip__ctat-mutations.json @@ -0,0 +1,579 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ncip/ctat-mutations", + "url": "https://github.com/NCIP/ctat-mutations", + "host": "github.com", + "commit": "42855afcc771db09819388ef71fb91f3a83a8415", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "Docker/build_docker.sh", + "sha256": "348f7efa039c2f5e403212019c7cf6119d46bfa3dc110d67898eb62c7453de63", + "language": "Shell", + "lines": 10, + "truncated": false, + "block": 9, + "row": 13908 + }, + { + "path": "Docker/install_R_packages.R", + "sha256": "b39d9bec69f7f9b1a81aad360edfe49b7349cf50ee4879f6d5ee32db246d4cc8", + "language": "R", + "lines": 24, + "truncated": false, + "block": 9, + "row": 12893 + }, + { + "path": "Docker/make_simg.sh", + "sha256": "245f12fdc5ec575f79aa1d0a25e0c8be31dabc0d869302ace2a253c9d27df947", + "language": "Shell", + "lines": 12, + "truncated": false, + "block": 9, + "row": 13958 + }, + { + "path": "Docker/push_docker.latest.sh", + "sha256": "479d7e68588e6d9d1dc1a39636b177a27d151528361b7ff5c54b9830ddbfe139", + "language": "Shell", + "lines": 7, + "truncated": false, + "block": 9, + "row": 13893 + }, + { + "path": "Docker/push_docker.sh", + "sha256": "6bd9db3dfea656916dfd66834c345f3e43913a44edc8ba79982a2b4a649bc327", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 9, + "row": 13899 + }, + { + "path": "LICENSE.txt", + "sha256": "a0bb7f75655c9072a33573d663a73ef43337cc3eb87403aa40be9a0f569120ef", + "language": "License", + "lines": 16, + "truncated": false, + "block": 9, + "row": 2879 + }, + { + "path": "PyLib/Pipeliner.py", + "sha256": "7ecf445395c400b2c0c11b0147bcf88c998fd594ba5df80e8635bbe98062ab16", + "language": "Python", + "lines": 256, + "truncated": false, + "block": 9, + "row": 10299 + }, + { + "path": "PyLib/ctat_util.py", + "sha256": "a9e101463b6ecc862750b6b4c408d19cceb700c2708c17ec0d70439d8fe5b751", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 9, + "row": 6570 + }, + { + "path": "README.md", + "sha256": "2615d31edf1f695ed2f72ae2b786ded9734b9de76cf3780681aa1c886c523d4c", + "language": "Text", + "lines": 19, + "truncated": false, + "block": 9, + "row": 14469 + }, + { + "path": "WDL/terra_data_prep/terra_data_prep.py", + "sha256": "eab76231cf5fcddaf0ef49f91463138267872bae70cf2424a893c47c168e9d51", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 9, + "row": 9318 + }, + { + "path": "download_cromwell.sh", + "sha256": "ec524a3626a8aa6f5456f4ad61abf4a62f0512dddd7bfb43e5a94904d329be5f", + "language": "Shell", + "lines": 5, + "truncated": false, + "block": 9, + "row": 13910 + }, + { + "path": "mutation_lib_prep/cosmic_integrator.py", + "sha256": "cd1e084d8ae2d6043bb1691a5868a118b2cb6b5792ec8710436bf5dc35618fc1", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 9, + "row": 9401 + }, + { + "path": "mutation_lib_prep/ctat-mutation-lib-integration.py", + "sha256": "a3f1a919410e5442e00bf54251484d4a9c977893e6320c258a8534d72b9f3bfd", + "language": "Python", + "lines": 154, + "truncated": false, + "block": 9, + "row": 9460 + }, + { + "path": "mutation_lib_prep/gencode_gtf_to_bed.pl", + "sha256": "77e28a68d35154ea51c08a410d49eb1c53e8b900f79a901c8c10c7637835f63a", + "language": "Perl", + "lines": 46, + "truncated": false, + "block": 9, + "row": 6040 + }, + { + "path": "mutation_lib_prep/gencode_gtf_to_splice_adjacent_regions.pl", + "sha256": "62f73dc744a951956e9264cfefd29129636d88c5264e3de84c539741acceca1a", + "language": "Perl", + "lines": 83, + "truncated": false, + "block": 9, + "row": 6053 + }, + { + "path": "mutation_lib_prep/make_CTAT_rnaediting_vcfs.pl", + "sha256": "a7ffaaf23c0f21c5818937de84a915ad2a13a6663cc82a2b1eec84a441b2eae4", + "language": "Perl", + "lines": 110, + "truncated": false, + "block": 9, + "row": 6056 + }, + { + "path": "src/FunctionalTester.py", + "sha256": "084f32ccbf22115eeb03a1add298df197a688ce8c5cd4148f094fa8c48a3f3cc", + "language": "Python", + "lines": 372, + "truncated": false, + "block": 9, + "row": 11713 + }, + { + "path": "src/ScriptTester.py", + "sha256": "fdc0bf302ee7af4a6e24e0bc40c97120b3531e28da5818e8563245ef82e97485", + "language": "Python", + "lines": 819, + "truncated": false, + "block": 9, + "row": 12507 + }, + { + "path": "src/SingleCells/add_fake_quals_to_sam.pl", + "sha256": "cb08842e198dbf1211cdb019d7f6947b16460ef71d5b573dc451293f2f3b68a6", + "language": "Perl", + "lines": 39, + "truncated": false, + "block": 9, + "row": 6033 + }, + { + "path": "src/SingleCells/variant_cell_UMI_count_report.py", + "sha256": "0385e01343136075eeaf1c0aaf3ca6df48304ccfbd27a93aec393122a141bf48", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 8531 + }, + { + "path": "src/Tester.py", + "sha256": "61e241dc31f2b9d2e4f6a091c3a1c88b0300111678d9f3d5158f5818994ea016", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6716 + }, + { + "path": "src/VariantBoosting/Apply_ML.py", + "sha256": "d4e9869f4cb0f2a6615fec7c3bd304f186522e08b62e96e9bdccfaf19d577899", + "language": "Python", + "lines": 738, + "truncated": false, + "block": 9, + "row": 12148 + }, + { + "path": "src/VariantBoosting/run_boosting_methods.py", + "sha256": "93895f8b928437ab090807ebf7ead352f3f05e3c10e7fdf5ad056ae463076010", + "language": "Python", + "lines": 272, + "truncated": false, + "block": 9, + "row": 10664 + }, + { + "path": "src/annotate_DJ.py", + "sha256": "d29d924740212f35a657b2b44e2bd508104a198e6ae4841327c94af3b901283b", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 9, + "row": 9639 + }, + { + "path": "src/annotate_ED.py", + "sha256": "629565fba29b8be5cf02369d7dcdb7ab3706bb08075770bb96415fe3618949c0", + "language": "Python", + "lines": 246, + "truncated": false, + "block": 9, + "row": 10182 + }, + { + "path": "src/annotate_PASS_reads.extract_sc_info.py", + "sha256": "a1f74c2b44e958e66350d8343a1fb86c12bffa795fc17776837ed83b786d65ad", + "language": "Python", + "lines": 688, + "truncated": false, + "block": 9, + "row": 12118 + }, + { + "path": "src/annotate_PASS_reads.py", + "sha256": "809043960358daab7642c96b05ac501cfc7d65248925fd5527387b50fe68d8fd", + "language": "Python", + "lines": 532, + "truncated": false, + "block": 9, + "row": 11802 + }, + { + "path": "src/annotate_boosted_vcf.py", + "sha256": "5132e8347081d01ecc859dd640b9bdba2837b3e076b01bc31d0f647c71f725d8", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8498 + }, + { + "path": "src/annotate_entropy_n_homopolymers.py", + "sha256": "b94cc8f420d918c1df988cfe5a89348ef94aa07f66a6f06b0cb27d04a436796f", + "language": "Python", + "lines": 214, + "truncated": false, + "block": 9, + "row": 10149 + }, + { + "path": "src/annotate_exon_splice_proximity.py", + "sha256": "dce5686f24cab828babe7687f29a24566aa81ae975516fefc828b241a87c0c10", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 9, + "row": 9483 + }, + { + "path": "src/annotate_repeats.py", + "sha256": "51a72fc5b98f4aebf724aaad84014d0e5b10f6ca9b212a60c99908f7f7fd4075", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8516 + }, + { + "path": "src/annotate_with_cravat.py", + "sha256": "2fa8daed0fa60f5ce64c2c424605492a67875eb5660ac6ea15aed536d91d8203", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 7717 + }, + { + "path": "src/annotated_vcf_to_feature_matrix.py", + "sha256": "0fd18f17aeefbc2444e117b07de8f14beb495c0a4c5671dd45facb844ae94df7", + "language": "Python", + "lines": 226, + "truncated": false, + "block": 9, + "row": 10178 + }, + { + "path": "src/cigar_N_splitter.py", + "sha256": "43e1a64c075d03c4c5d3add1712cdd52c10e31e3b8cc097d233a493c9a7682c2", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 9, + "row": 9449 + }, + { + "path": "src/combine_vchk.py", + "sha256": "f6da7083e48c782e0d94f8acfcb92159b2dd7910219cad87eee4695319655228", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 9373 + }, + { + "path": "src/confirm_maf_mutations.py", + "sha256": "3c695c37480b50340791098c71a4e8be26bceb3ba15d8c698f42b76877d0a0c2", + "language": "Python", + "lines": 311, + "truncated": false, + "block": 9, + "row": 11309 + }, + { + "path": "src/ctat_util.py", + "sha256": "2d4c072241e53094ea57f419e0e7a2eda679abb58e00ab2b1c39e2d156a50e02", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 9, + "row": 6559 + }, + { + "path": "src/filter_snps_rna_editing.py", + "sha256": "1cd08bf4974d23cd9b082725d709a496a4cbe99a8586969e097479c5731eb9cc", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 9, + "row": 9405 + }, + { + "path": "src/filter_variant_clusters.py", + "sha256": "a317b72061afcebde403004b587d2e4a27423578e64472e94e2ed3cfbbbe323b", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 9, + "row": 9609 + }, + { + "path": "src/filter_vcf_for_cancer_prediction_report.py", + "sha256": "36abbf5ee9b10b89d47c111d437a61a61450031b7d5bb42c293625129fe28a21", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 9, + "row": 9280 + }, + { + "path": "src/groom_cravat_annotation.py", + "sha256": "929212a4e5254d7273e98bffa2e0da249005e0feb7ed8e49effc7ee00ccec222", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 9, + "row": 9242 + }, + { + "path": "src/groom_vcf.py", + "sha256": "cd0943b8c2b38ae923c5c7e94630abf6720979f0db9517232f0c333b2875b0d5", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 9, + "row": 10339 + }, + { + "path": "src/hold/summarize_annotate_vcf.py", + "sha256": "b3e75f8642b6850ece90ee3876c65269c94f50ca2b646266a74f475e5d6f0120", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 10620 + }, + { + "path": "src/hold/tabs_to_percent_mutations.py", + "sha256": "2cc7ef2f5b01440654a6a8c499abb9a118a2cbbc386ea774c70d52fa4f30ba00", + "language": "Python", + "lines": 316, + "truncated": false, + "block": 9, + "row": 11379 + }, + { + "path": "src/jaccard_distance.R", + "sha256": "a94926188a32efd14a6ecc11008175e3a60dc50568ff00119de2d9137339517e", + "language": "R", + "lines": 30, + "truncated": false, + "block": 9, + "row": 12806 + }, + { + "path": "src/jaccard_distance_restricted.R", + "sha256": "91855cf3b7c14ad2494f018920c982b6b7e9a18f754ef862d96dd94df4b94536", + "language": "R", + "lines": 45, + "truncated": false, + "block": 9, + "row": 12881 + }, + { + "path": "src/make_dendrogram_generic.R", + "sha256": "213daf534f8274051a12166da41bbaa522cb152ca25ed5941c6eae2de4403df7", + "language": "R", + "lines": 28, + "truncated": false, + "block": 9, + "row": 12871 + }, + { + "path": "src/make_inspector_json.py", + "sha256": "35bd75e5295a0d88a7314526980caa447e9e83dfd0f7ed1fb023596e92c929c4", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 9, + "row": 10625 + }, + { + "path": "src/make_mutation_inspector_json.py", + "sha256": "5e3e8d095c94b2c7f58b402d3a97359a9dc637eab9eb30054a9c13ebda61de5b", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 8035 + }, + { + "path": "src/make_paired_to_unpaired_bam.pl", + "sha256": "3fa14afe7b54120b5689957e077729d505c56d6f9bee5c069908040b031b3dc9", + "language": "Perl", + "lines": 75, + "truncated": false, + "block": 9, + "row": 6044 + }, + { + "path": "src/normalize_bam_by_strand.py", + "sha256": "f95908d55c9361697187f1c454faacf578cff98ed22a89b1b71d13e1fb84bcab", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8436 + }, + { + "path": "src/plot_vcf_sizes.py", + "sha256": "73879c9cab63b874a89104bcf72df0d613fda1575f235f9025f7e5130d0ee1e7", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7593 + }, + { + "path": "src/reduce_vcf_to_snps.py", + "sha256": "7825046e3f5fb2b328f001422b92ef0935dd0ed78ef9aeeeaaabebdc9b8c9e04", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 9112 + }, + { + "path": "src/separate_bam_by_strand.py", + "sha256": "015b257238180b0cb25e42d00c2b8bf3eef34d3fa9960d343da8b92ed28f4ead", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8254 + }, + { + "path": "src/separate_snps_indels.py", + "sha256": "b4dbac1190ab3f431fe88082590cdd282a3f8dd4a992e8f1d8ec9a75e7874899", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 9, + "row": 9661 + }, + { + "path": "src/update_snpeff_annotations.py", + "sha256": "fa98b66b92cd2678c5889b8dd6230f9d4f9d6f8f3eab4f8791f06ba7ef34f7cb", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 8417 + }, + { + "path": "src/vcf_attribute_counter.py", + "sha256": "bd9f60e863be294198d13fcf96836e2f819a96bd1d2bf37bab777723a195dd6e", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 7834 + }, + { + "path": "src/vcfs_to_genotype_matrix.py", + "sha256": "d228908cb48b067aede0f45687703e10914a19223c713863b6834823e898042a", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 9, + "row": 8887 + }, + { + "path": "src/vcfs_to_snp_calls_tab.py", + "sha256": "369f84f29f0a31338991f624938bf6e0282741bb458469cdb904a2ea3c10610e", + "language": "Python", + "lines": 237, + "truncated": false, + "block": 9, + "row": 10798 + }, + { + "path": "src/visualize_mutation_depth_tab_files.R", + "sha256": "2d93c99ce747b49d8eaddca672655ea559106d6ed90d20907519688556fbeb5c", + "language": "R", + "lines": 559, + "truncated": false, + "block": 9, + "row": 13827 + }, + { + "path": "testing/conftest.py", + "sha256": "d84222b29e6cba532bc5a144fffcd08d485dfa88b63719de6e49d893e22bbec7", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6532 + }, + { + "path": "testing/test.sh", + "sha256": "01cb61cca77cfd4ef33a3888f05e77bd768c7de7774175e5eee6ff90881daa6e", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 9, + "row": 14022 + }, + { + "path": "testing/test_ctat_mutations.py", + "sha256": "ec46f606f87cd01c3d82e552a4009032a1555ac424c0c2802528bb1e7c5d1c7b", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 8238 + } + ] +} \ No newline at end of file diff --git a/manifests/7b/figshare__29298431.json b/manifests/7b/figshare__29298431.json new file mode 100644 index 0000000000000000000000000000000000000000..145b163d173ea255bac4c22cca91b436c78327b5 --- /dev/null +++ b/manifests/7b/figshare__29298431.json @@ -0,0 +1,84 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "figshare:29298431", + "url": "10.6084/m9.figshare.29298431", + "host": "figshare.com", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "AA_Active_CLA.R", + "sha256": "c4a5cd5d1dbd2e157930e6a9368b5675fa2d9ee53a74c8e268c900e21953b9ec", + "language": "R", + "lines": 73, + "truncated": false, + "block": 9, + "row": 13074 + }, + { + "path": "AA_Active_P.R", + "sha256": "2eb9923d385c418d93742524528a0982112609781c7e9e1fbe6b32df30c8eba0", + "language": "R", + "lines": 32, + "truncated": false, + "block": 9, + "row": 12841 + }, + { + "path": "AA_Active_POT.R", + "sha256": "7d92d2d298e5504480d2431464b0de90770bb6b5b65f90936f21ef79e5a07bcd", + "language": "R", + "lines": 73, + "truncated": false, + "block": 9, + "row": 13075 + }, + { + "path": "CLA_Z.sh", + "sha256": "45eb890d5819e2534cf85a8c4bd2b1d7e0555f277687aa5c69e69cbbf1d5ccf8", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14039 + }, + { + "path": "POT_Z.sh", + "sha256": "bbb12afc092fcfdeefc6907a31ade3abc2400c5103813c6bc172b4d328715d8e", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14041 + }, + { + "path": "P_Z.sh", + "sha256": "cbe0f4b854a85a8d14065efab4a291868536586f9d82b87c1378ca651f7e8228", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14037 + }, + { + "path": "Pore_Z.sh", + "sha256": "b6c3d2ed30a13f220ead4c8b156cddf8a694855f5c7a42a02c1bb5f65e353b1a", + "language": "Shell", + "lines": 32, + "truncated": false, + "block": 9, + "row": 14140 + }, + { + "path": "README", + "sha256": "fc3abeb10237f6dfcc55992c01ef57cef4b2e9cf47c8dc8cfc9aed7a3e2cf473", + "language": "Text", + "lines": 21, + "truncated": false, + "block": 9, + "row": 14491 + } + ] +} \ No newline at end of file diff --git a/manifests/7b/github.com__adredish__mclust-spike-sorting-toolbox.json b/manifests/7b/github.com__adredish__mclust-spike-sorting-toolbox.json new file mode 100644 index 0000000000000000000000000000000000000000..a7b634b1af8fce1754dfc453c369ea19fde60021 --- /dev/null +++ b/manifests/7b/github.com__adredish__mclust-spike-sorting-toolbox.json @@ -0,0 +1,1803 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/adredish/mclust-spike-sorting-toolbox", + "url": "https://github.com/adredish/MClust-Spike-Sorting-Toolbox.git", + "host": "github.com", + "commit": "1bc8401d1bc869acc73e18c1dd110b401ef3984b", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "+KlustaKwik/RunOneKKwik.m", + "sha256": "db8005691b497c2374b7e2bb80fa1404769ef805d957c8cb7f8d6fb8a547bae4", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 9, + "row": 4437 + }, + { + "path": "+KlustaKwik/WriteKKwikFeatureFile.m", + "sha256": "31aec1d87d4fd26674a281ec672daa1d85f010528c69b91b37839c9ca78b756b", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 9, + "row": 4372 + }, + { + "path": "+MClust/+ClusterQuality/IsolationDistance.m", + "sha256": "e3875f806cc9ed599786ce1fb306c6799b5986eb00267ff9d729119826d3110c", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3632 + }, + { + "path": "+MClust/+ClusterQuality/L_Ratio.m", + "sha256": "e9f71631c348b07294828205ea1bbece8d4d4760a98e30088b6e011205b6de40", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3576 + }, + { + "path": "+MClust/+ClusterTypes/@Cluster/CalculateIsolationDistance.m", + "sha256": "b09f294f323402762f1f52c4698e2f408633eb72981dab4b25d28ac211a3a44c", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3234 + }, + { + "path": "+MClust/+ClusterTypes/@Cluster/CalculateLRatio.m", + "sha256": "958b36b97f8738f086d4118432d46cacaa9eec596d3e90306ada39838cb21eed", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3212 + }, + { + "path": "+MClust/+ClusterTypes/@Cluster/CalculateLRatio_and_IsolationDistance.m", + "sha256": "a437f87a8a1b40437d9c120617461929c9b700c2eca49dead2a247e57443f352", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3329 + }, + { + "path": "+MClust/+ClusterTypes/@Cluster/CalculateSNR.m", + "sha256": "a06dc77ba907aafe42bcba7e6f8d04d0509166216d6ceec3eef2ade7c6765a16", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3328 + }, + { + "path": "+MClust/+ClusterTypes/@Cluster/CheckCluster.m", + "sha256": "2943b112b8c0e9bc157dd81aea313f2785df99eccc162dc92cceb90e948ff3be", + "language": "MATLAB", + "lines": 1, + "truncated": false, + "block": 9, + "row": 4806 + }, + { + "path": "+MClust/+ClusterTypes/@Cluster/Cluster.m", + "sha256": "bbd2cbaf26067f36c0112da6237f171cb0553b6ba59fb9ee95df0420fe047a15", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 9, + "row": 4385 + }, + { + "path": "+MClust/+ClusterTypes/@Cluster/ClusterFunc_00_ShowInfo.m", + "sha256": "161cb03ac0f86e14b662572d8de15b878b74782bf751871549808ae0fc0953d7", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 9, + "row": 2981 + }, + { + "path": "+MClust/+ClusterTypes/@Cluster/ClusterFunc_01_CheckCluster.m", + "sha256": "bdbe6f664ab3fe87e740c28f30dd12d395f47d827b238a203cfed432c4cd4d16", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 9, + "row": 2955 + }, + { + "path": "+MClust/+ClusterTypes/@Cluster/ClusterFunc_ShowAutocorr.m", + "sha256": "30c9330d5c41e1ac494e9c2a6caf4a394f136b421ca9ebaa61c10783bafed239", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3395 + }, + { + "path": "+MClust/+ClusterTypes/@Cluster/ClusterFunc_ShowAverageWaveform.m", + "sha256": "c231e7a047559c5c9de193b913c71e16d0ff206161daa06e22d407766b0578bb", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3419 + }, + { + "path": "+MClust/+ClusterTypes/@Cluster/ClusterFunc_ShowHistAtPeak.m", + "sha256": "f166eedb5bb2609fadd4d8939ce3593f6f41df2f9ddd9662b1d8e0f9ce601df4", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3621 + }, + { + "path": "+MClust/+ClusterTypes/@Cluster/ClusterFunc_ShowHistISI.m", + "sha256": "386548ba194012991c7a2d7f590499048210699ca9104cad375e7b91288eeef9", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 9, + "row": 3345 + }, + { + "path": "+MClust/+ClusterTypes/@Cluster/ClusterFunc_ShowWaveformWaterfall.m", + "sha256": "df32c5c39e95acc14e90f38f512095be5eeb01538fa22af764f14ce0277fb420", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3581 + }, + { + "path": "+MClust/+ClusterTypes/@CvxHullCluster/ClusterFunc_00_ShowInfo.m", + "sha256": "d1188101b3113b7e923f4a271efaf49eb3071047791ae5e14b995ebae698f1b8", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3109 + }, + { + "path": "+MClust/+ClusterTypes/@CvxHullCluster/ClusterFunc_AddLimit.m", + "sha256": "6d429bcc433d5ab2f541547b21828246a8789539ffd108a5df215971f6731183", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3289 + }, + { + "path": "+MClust/+ClusterTypes/@CvxHullCluster/ClusterFunc_DeleteAllLimits.m", + "sha256": "6b72ea57bdf65766c1426c74b122bb981e5bc3b8ce30705a050667b880232eaf", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3028 + }, + { + "path": "+MClust/+ClusterTypes/@CvxHullCluster/ClusterFunc_DeleteLimit.m", + "sha256": "a573e0fed59428db0254114ffd5a999ef1c8e60ba44e8c1d8635fe016f57725f", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3163 + }, + { + "path": "+MClust/+ClusterTypes/@CvxHullCluster/CopyHulls.m", + "sha256": "fbabe4c1d500d83db732c3b64484a2743af92b69722200788c355fd677539ff8", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3514 + }, + { + "path": "+MClust/+ClusterTypes/@CvxHullCluster/CvxHullCluster.m", + "sha256": "08602a62d1a086f9c161ca1ff1f617efeac21c19a5fc2c96830d9f0d07958f4e", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 9, + "row": 3913 + }, + { + "path": "+MClust/+ClusterTypes/@CvxHullCluster/PlotSelf.m", + "sha256": "e3b4f1bc7f5b7fc89a143689806becf4777a69f31d9d5396053924826938827c", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 9, + "row": 3193 + }, + { + "path": "+MClust/+ClusterTypes/@CvxHullCluster/SetParms.m", + "sha256": "b776874ece097dda9711e77f075c971e202a6cfbea03eec953292a290db03d67", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3612 + }, + { + "path": "+MClust/+ClusterTypes/@DisplayableCluster/ClusterFunc_02_DeleteCluster.m", + "sha256": "0c0823e79cbda92c7440c36f299b0adc0dfb2b613bd2e144e67fdf48a59bb236", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3020 + }, + { + "path": "+MClust/+ClusterTypes/@DisplayableCluster/ClusterFunc_Convert.m", + "sha256": "13f93375c6944d168a6938992a08386666f6099d82c9409c833fc6664c46554a", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3343 + }, + { + "path": "+MClust/+ClusterTypes/@DisplayableCluster/ClusterFunc_Copy.m", + "sha256": "906cb82259442e7050bbbd7cc215dcd6d3d2f43bd7342078ad1c9442a9cc4ba1", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3014 + }, + { + "path": "+MClust/+ClusterTypes/@DisplayableCluster/ClusterFunc_RunKKwikOnCluster.m", + "sha256": "3b6f0d2683421d774ef4312b548e92fda167255b2e59091c113a117b1facb099", + "language": "MATLAB", + "lines": 145, + "truncated": false, + "block": 9, + "row": 5100 + }, + { + "path": "+MClust/+ClusterTypes/@DisplayableCluster/ClusterFunc_ShowCrosscorr.m", + "sha256": "5cd96adf837c6ca89278f5730373043fcc6233cef16d99e2ac7918879f99d7ba", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3891 + }, + { + "path": "+MClust/+ClusterTypes/@DisplayableCluster/ClusterFunc_ShowWaveforms.m", + "sha256": "6dd20aeb28906e6b7101c214ad0bb1b7fb9b19c530b6a4eb04ec558c3fc7a5b5", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 9, + "row": 3950 + }, + { + "path": "+MClust/+ClusterTypes/@DisplayableCluster/DisplayableCluster.m", + "sha256": "5c0e4fc4205ab1a8be114d3a730a550c719c33616836afd63c52a01465a00cdf", + "language": "MATLAB", + "lines": 164, + "truncated": false, + "block": 9, + "row": 5012 + }, + { + "path": "+MClust/+ClusterTypes/@DisplayableCluster/PanelSelf.m", + "sha256": "66c60a177dcd307b65ef8ced5a92face825880c7a530b4c3657688b3d96ea999", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4178 + }, + { + "path": "+MClust/+ClusterTypes/@DisplayableCluster/PlotSelf.m", + "sha256": "a7463d4f354bf43ffb43f62071b20881b357b5a607b73f7435cc7e3970c88253", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3049 + }, + { + "path": "+MClust/+ClusterTypes/@KKCluster/KKCluster.m", + "sha256": "6e8a48c7df2509b6ce80158f364b4e43bf75351c0c7141935940d06bce6a4cb8", + "language": "MATLAB", + "lines": 202, + "truncated": false, + "block": 9, + "row": 5262 + }, + { + "path": "+MClust/+ClusterTypes/@MCCluster/MCCluster.m", + "sha256": "1e1b9ab6f909daf97686dc5c277bf73ff614bb3d2c6e67a6de555100ed67b288", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3565 + }, + { + "path": "+MClust/+ClusterTypes/@SpikelistCluster/ClusterFunc_AddSpikesByCvxHull.m", + "sha256": "d55fae66eff2d6f25f7fe9355e1f5a6f6d541b08789e600ab25c77c116a9c129", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3274 + }, + { + "path": "+MClust/+ClusterTypes/@SpikelistCluster/ClusterFunc_AddSpikesByGaussian.m", + "sha256": "61a2388aaf9a4ecac592b125df4afd4cdff4c60051a1abbc5c27ee367927ae8f", + "language": "MATLAB", + "lines": 77, + "truncated": false, + "block": 9, + "row": 4185 + }, + { + "path": "+MClust/+ClusterTypes/@SpikelistCluster/ClusterFunc_AddSpikesByPolygon.m", + "sha256": "ab3650c7d33679ff817319d2256d3d2bd25862b55690dbb2bc83dba71fed9020", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3268 + }, + { + "path": "+MClust/+ClusterTypes/@SpikelistCluster/ClusterFunc_AddSpikesFromUnaccountedByCvxHull.m", + "sha256": "9e84bc85af01f91b6d98cfafd4d47cb97740162eb47c9f65419d785df781bf8b", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3338 + }, + { + "path": "+MClust/+ClusterTypes/@SpikelistCluster/ClusterFunc_AddSpikesFromUnaccountedByPolygon.m", + "sha256": "d41901c678e2ea6a4eb143c5e20e0df695a807307d7186566570aea1594f65ac", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3340 + }, + { + "path": "+MClust/+ClusterTypes/@SpikelistCluster/ClusterFunc_CutOnBestProjection.m", + "sha256": "06fdd234ae941362c3996aaa4a4fb4b60b125755b0623426cf87873627a1fa8b", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3418 + }, + { + "path": "+MClust/+ClusterTypes/@SpikelistCluster/ClusterFunc_DeleteAllSpikes.m", + "sha256": "a2999123b9ce0d872853f1158ec2ea8a798ee69e9b002230058a29aa96c0a98e", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3191 + }, + { + "path": "+MClust/+ClusterTypes/@SpikelistCluster/ClusterFunc_LimitSpikesByCvxHull.m", + "sha256": "24d4faeffdce154d8b7073f232bbc9ac1fd6d6a6b9bc3de02b872304efb47d28", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3299 + }, + { + "path": "+MClust/+ClusterTypes/@SpikelistCluster/ClusterFunc_LimitSpikesByPolygon.m", + "sha256": "0c56cbc1f5c5b5867e4b13b160504c47d1ade0a8df8b2ce79fc4fff8a77d0408", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3294 + }, + { + "path": "+MClust/+ClusterTypes/@SpikelistCluster/ClusterFunc_LimitSpikesByWaveforms.m", + "sha256": "7271aeacaa2681d871d68ba064e0cae9eb77a0dbb39c33793bb40411a077bdf0", + "language": "MATLAB", + "lines": 131, + "truncated": false, + "block": 9, + "row": 4812 + }, + { + "path": "+MClust/+ClusterTypes/@SpikelistCluster/ClusterFunc_MergeWith.m", + "sha256": "ffae12ad6874a21b0b715d96f91446c602e30f313bb52e3f440e3502c4f69848", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4162 + }, + { + "path": "+MClust/+ClusterTypes/@SpikelistCluster/ClusterFunc_RemoveSpikesByCvxHull.m", + "sha256": "2898024ea1ae87abdae39e3fcd906d8a4cb6417730438d043244338ae2d423a7", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3284 + }, + { + "path": "+MClust/+ClusterTypes/@SpikelistCluster/ClusterFunc_RemoveSpikesByPolygon.m", + "sha256": "4182ae69e231e70e08dff63adb4fdd50733130d5b42fca89b04cddd6d3bc696a", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3285 + }, + { + "path": "+MClust/+ClusterTypes/@SpikelistCluster/ClusterFunc_Remove_Doubles.m", + "sha256": "d2943432601119fc5a34d5bccdc72c4537e6982cb60d5533c33f5d3db216e2e9", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3547 + }, + { + "path": "+MClust/+ClusterTypes/@SpikelistCluster/ClusterFunc_SplitSpikesByCvxHull.m", + "sha256": "a20ed2410458bddae557c30499f5c24a076ece2f146dea675488a14b85e6a39f", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3476 + }, + { + "path": "+MClust/+ClusterTypes/@SpikelistCluster/ClusterFunc_SplitSpikesByPolygon.m", + "sha256": "19dd99b5046a8cdc4f1fe1c41a7d30a840bd89635a586949b2c53fe64430928f", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3477 + }, + { + "path": "+MClust/+ClusterTypes/@SpikelistCluster/SpikelistCluster.m", + "sha256": "c01536fa9b8c819091a8ff8761db2d27e93e6fbdd2ab39d6b398c7dc607a2c42", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 9, + "row": 4073 + }, + { + "path": "+MClust/+ClusterTypes/@ZeroCluster/ClusterFunc__ToggleUnaccountedForSpikesOnly.m", + "sha256": "153597c08d97192a1e62ccb218a07a520f10ebde099816f20516e334c8d0f0e9", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3162 + }, + { + "path": "+MClust/+ClusterTypes/@ZeroCluster/ZeroCluster.m", + "sha256": "ceb000f792539bf912d6475ad2eda6a52919da5f52b72d6966c44765901dc62c", + "language": "MATLAB", + "lines": 90, + "truncated": false, + "block": 9, + "row": 4551 + }, + { + "path": "+MClust/+Limits/WaveformLimit.m", + "sha256": "87e68902eb560d4b7a676c18ee6da20b632f07332b635b7488d008f3a6d2ea5b", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3569 + }, + { + "path": "+MClust/@BestProjectionCutter/BestProjectionCutter.m", + "sha256": "e65a66434ee50e4b0f558abd235075801912f1aa3a537f83cf6edad44bcf6ecf", + "language": "MATLAB", + "lines": 186, + "truncated": false, + "block": 9, + "row": 5112 + }, + { + "path": "+MClust/@BestProjectionCutter/CreateCutterWindow.m", + "sha256": "ecc5977440119765de1abfcf8771b74609dd85f1263dd4c6fedf9a4b7876ce1f", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 4163 + }, + { + "path": "+MClust/@BestProjectionCutter/Projection1.m", + "sha256": "c48012c62df00e24436388ea02fd8eda3f6cac1d63bef7ffdfb2684a5e61f002", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 9, + "row": 4298 + }, + { + "path": "+MClust/@BestProjectionCutter/Projection2.m", + "sha256": "50a035bb9b271b04c2b574d7a81dee0893a2e1d8b428b4b228c30efaab9e82c8", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 3915 + }, + { + "path": "+MClust/@BestProjectionCutter/Projection3.m", + "sha256": "3a7a9f9a1ae62c4e68701174b8e2cd60ea5c43f22f69c33b5b77a9e1c5fb8704", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 9, + "row": 3757 + }, + { + "path": "+MClust/@BestProjectionCutter/RecalculateProjection.m", + "sha256": "2a5ac0d28f167d0526b7a761c9373d1c247f2876df5e4a5119c2150980ed702a", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 9, + "row": 3197 + }, + { + "path": "+MClust/@BestProjectionCutter/RecalculateProjection0.m", + "sha256": "7b91a9a5413edb2e53975ea7a3a69bcd545caa9079d912438bccbcafcb472780", + "language": "MATLAB", + "lines": 92, + "truncated": false, + "block": 9, + "row": 4507 + }, + { + "path": "+MClust/@BestProjectionCutter/RedrawAxes.m", + "sha256": "942217bd53fb0da703911b496ab9ef5dbf25d7412aecb2a98245f3964061485c", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 9, + "row": 3793 + }, + { + "path": "+MClust/@BestProjectionCutter/RedrawClusters.m", + "sha256": "4fe8647deb96ab64c74d6790ae9ea4e46a47ae52a0312107ca442958fc22eacc", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 3990 + }, + { + "path": "+MClust/@Cutter/CreateCutterWindow.m", + "sha256": "8051b7be635d1ba7069e102b0b14dde691bdb2533c6ac7fff4cb6697c2acbe46", + "language": "MATLAB", + "lines": 182, + "truncated": false, + "block": 9, + "row": 5405 + }, + { + "path": "+MClust/@Cutter/Cutter.m", + "sha256": "eefd7fc3d64bfae6083ec3030807bbf835c7165bec8622405ad92e17741e2855", + "language": "MATLAB", + "lines": 321, + "truncated": false, + "block": 9, + "row": 5380 + }, + { + "path": "+MClust/@Cutter/CutterOption_00_CheckAllClusters.m", + "sha256": "e59115a783d77983078ee61b9769e88d15d2e35854ef41a3ef0cbba493866f7b", + "language": "MATLAB", + "lines": 1, + "truncated": false, + "block": 9, + "row": 3264 + }, + { + "path": "+MClust/@Cutter/CutterOption_AllCrossCorrs.m", + "sha256": "2f3d414ae0d1f7fc2a9ed90741b3a089593f1f8de694ec9c703ee4b771b3da80", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3674 + }, + { + "path": "+MClust/@Cutter/CutterOption_CloseAllNonEssentialFigs.m", + "sha256": "a240fd24fdcecd6f7705da4c38cb94344d26360458785eb228317c42bfb85354", + "language": "MATLAB", + "lines": 1, + "truncated": false, + "block": 9, + "row": 3290 + }, + { + "path": "+MClust/@Cutter/CutterOption_CompareAverageWaveforms.m", + "sha256": "64983656b54f36e1a8391491142a6d0b35712a10e1be73d3a5ff359b26a36eac", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 9, + "row": 4075 + }, + { + "path": "+MClust/@Cutter/CutterOption_RecolorClusters.m", + "sha256": "325911a20c73d6ea1eca05aae3530a1a3c193c6e81780ee2f4e06ec0f4b6f179", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3444 + }, + { + "path": "+MClust/@Cutter/DrawPolygonOnAxes.m", + "sha256": "92335688956030fa17a4971c2bf16c78bc41d7603cba83c3666975ac8a7f6052", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3407 + }, + { + "path": "+MClust/@Cutter/RedrawAxes.m", + "sha256": "b745f2f1308a93ce03b037e3325f4df52cc547dd5ec97c8033101fa6f4b0eef1", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 9, + "row": 4272 + }, + { + "path": "+MClust/@Cutter/RedrawClusters.m", + "sha256": "4584073bb4a805ad4a595d0f80e0e6130bb55d015498cb5707d21c4f11edda65", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3491 + }, + { + "path": "+MClust/@Feature/Feature.m", + "sha256": "e5781df2b985e1c24c1fe85930e9ea5726532af05cfd5adb6626832b9871d952", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 9, + "row": 3862 + }, + { + "path": "+MClust/@KKwikCutter/CreateCutterWindow.m", + "sha256": "b6774292e4c228b7695c2d2a83f6e1d85c688df4b7257c9f1968f6cedf3697ac", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 4151 + }, + { + "path": "+MClust/@KKwikCutter/FindBestAxes.m", + "sha256": "2600e5e3e42d420ebeeb5ffecb18a71571dfa4c4a0568b4aa268bb66727f65f7", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3819 + }, + { + "path": "+MClust/@KKwikCutter/KKwikCutter.m", + "sha256": "062b146a03304ff21e61a16e89d95557b69e4ad9fa4759837648c41529550b48", + "language": "MATLAB", + "lines": 250, + "truncated": false, + "block": 9, + "row": 5471 + }, + { + "path": "+MClust/@KKwikCutter/RedrawAxes.m", + "sha256": "87bf3bfc8ebe7fa73c39d8b418ed0db3d6390f20ac9228f9826046a63c03e6d8", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 3925 + }, + { + "path": "+MClust/@ManualCutter/CreateCutterWindow.m", + "sha256": "76ed0ba9c1692e3ef129e6776eb04e20e6f550ecf6144d45a13100482d70bf68", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 9, + "row": 4825 + }, + { + "path": "+MClust/@ManualCutter/CutterOption_CreateClustersFromTFiles.m", + "sha256": "36fcea3177088080f486b26f8a61c4e6cc1be642bc36fddddc2b032ea9e437ab", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3729 + }, + { + "path": "+MClust/@ManualCutter/CutterOption_EvalOverlap.m", + "sha256": "af2fbed1c4e0d98124547cf52fa689e5b867f1e9c34b6902d23ec9a3b421a22a", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 9, + "row": 3231 + }, + { + "path": "+MClust/@ManualCutter/CutterOption_SelectAndDelete.m", + "sha256": "f6b7c6d98c60c3d5898eeb6aca9d31ec5254699fa1402557a4fe6172b5efe245", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3202 + }, + { + "path": "+MClust/@ManualCutter/ManualCutter.m", + "sha256": "35f1f4d049f7a3c8e4731b2363c93e8e15f58ce9152777ebeb501047fa25769e", + "language": "MATLAB", + "lines": 189, + "truncated": false, + "block": 9, + "row": 5244 + }, + { + "path": "+MClust/@SpcCutter/CreateSpcCutterWindow.m", + "sha256": "259dd9519bbf6583f588440e8bc815d2de6847070bef8c1c2fb71ed37b3c7e69", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 9, + "row": 3509 + }, + { + "path": "+MClust/@SpcCutter/RedrawAxes.m", + "sha256": "3e881415123d4d42f0a0b00e15e01f3bb43c654cbc16dde2f23d25ef86ebb6b9", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 9, + "row": 4244 + }, + { + "path": "+MClust/@SpcCutter/RedrawClusters.m", + "sha256": "366257b299b08a2154c336fbf8a2b10e83f005decf274f4115982763f210c1d6", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3544 + }, + { + "path": "+MClust/@SpcCutter/SpcCutter.m", + "sha256": "4ea80666345e7006012eff83f79d2cd695c8484b6aedcb3d83b183ebdea2ffa5", + "language": "MATLAB", + "lines": 336, + "truncated": false, + "block": 9, + "row": 5649 + }, + { + "path": "+MClust/AutoCorr.m", + "sha256": "41e35be5b1265defd8b5cafb485ffe16e4132eab0c2296ea2aa42a41cc9e3af0", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 3681 + }, + { + "path": "+MClust/AverageWaveform.m", + "sha256": "b86144c8429bf23fe9d0a86c57478924e43953c920438eed81b22ba1368e432d", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 3919 + }, + { + "path": "+MClust/CalculateFeatures.m", + "sha256": "2d83c4ecb30b93b50c61f8b286b8e3e03fb8f23ade11c8a7e894b29747c9587d", + "language": "MATLAB", + "lines": 94, + "truncated": false, + "block": 9, + "row": 4550 + }, + { + "path": "+MClust/CrossCorr.m", + "sha256": "d8fd60cc85abf544d84c075f00e46a1aaa3447a0d93a3abbb38bb7907b63e0de", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 9, + "row": 3845 + }, + { + "path": "+MClust/GetData.m", + "sha256": "cf3be77f147f6aaee04450397396b5adcf2cb4eff9338654d2de14766ff56082", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 3021 + }, + { + "path": "+MClust/GetSettings.m", + "sha256": "6000eb37ed5c14776589da14bfe003dbbf4d9d4bf0eab26e9535d97973234509", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 2972 + }, + { + "path": "+MClust/HistISI.m", + "sha256": "103e729b0220492321d82fca73e33d0c861f17673a1e8ce5e3a0d4aef93c5627", + "language": "MATLAB", + "lines": 103, + "truncated": false, + "block": 9, + "row": 4423 + }, + { + "path": "+MClust/ReadHeader.m", + "sha256": "8db00a636ac28de26d541b29a9ab0e1a97d83d138d93fa3b09b7a04d2727eb76", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3549 + }, + { + "path": "+MClust/WriteHeader.m", + "sha256": "d6b867dd309ca5c84df2b1769f5cd2e30c53a639bb6afa3859efa3792245b0a7", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 9, + "row": 3685 + }, + { + "path": "+MClustStats/AutoCorr.c", + "sha256": "45d832b598f2f83465341b157771c8519a4a6bc53b4e8953df1ea9721374a95d", + "language": "C", + "lines": 104, + "truncated": false, + "block": 9, + "row": 29 + }, + { + "path": "+MClustStats/CrossCorr.c", + "sha256": "9bdb9dad243624653d568674533360157068178bb23d3c0410f3ce320b95579c", + "language": "C", + "lines": 132, + "truncated": false, + "block": 9, + "row": 32 + }, + { + "path": "+MClustUtils/BestSubplots.m", + "sha256": "9f893134df0dd9f93653597574155fd6c14e38e18e10b775c304a873a003b645", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3071 + }, + { + "path": "+MClustUtils/ListboxPair.m", + "sha256": "d31edd21271236cd96db7a02a7835c6f7d180b65c77c8538c4c388126f9d76b9", + "language": "MATLAB", + "lines": 126, + "truncated": false, + "block": 9, + "row": 4713 + }, + { + "path": "+MClustUtils/NRadioSwitch.m", + "sha256": "3d7c4398fefd23fb7c2a56a1908f8eebcd020fccfb9dc5396a8372c3722c22f9", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 9, + "row": 3775 + }, + { + "path": "+MClustUtils/TwoRadioSwitch.m", + "sha256": "aba0af8db3fb4d1aecd3ef05ec236c722807c985353445215b02c4a993feccdc", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 9, + "row": 3985 + }, + { + "path": "+MClustUtils/UndoSystem.m", + "sha256": "5e497901f9a425e82ea1f34be8a4743b4428fabece5fec974be0948094365380", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 9, + "row": 4138 + }, + { + "path": "+MClustUtils/myCallerName.m", + "sha256": "ff99e8d0718d5d6643acb6c8e8f2e63cfd83a61e95ae465d5ecae3883d3a0603", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3126 + }, + { + "path": "+MClustUtils/process_varargin_class.m", + "sha256": "7ab454a97b91f737809f2962f832d4d1d56d76600a9fc52ce8be287d0f495e7f", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3428 + }, + { + "path": "@MClustData/AddCluster.m", + "sha256": "ef4c2fec5e63771af6ce635a21b25d96732085a976ce03a9ea908fb52ed19598", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3121 + }, + { + "path": "@MClustData/ApplyConvexHullsFromFile.m", + "sha256": "fba7abf61ec11a1bfe3eccd97cc6dd3cb14a2c87df526baf0409c9882ae457ad", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3564 + }, + { + "path": "@MClustData/EraseTfiles.m", + "sha256": "d96fac9fe8f4af21d636f0a6cb8213dfa5ba68022a0435f6f2b10df1e1904b65", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3440 + }, + { + "path": "@MClustData/FillFeatures.m", + "sha256": "b9d3c3ce636d37e5fb0bf791a5695daaad721d169fdf3536daed90d04f592715", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 9, + "row": 3158 + }, + { + "path": "@MClustData/GetFeatureNames.m", + "sha256": "1e188990b6736a8acf7fc11c62f659d0c69c693a7ae30ee3333c57ebbb604e6a", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 2995 + }, + { + "path": "@MClustData/LoadNeuralTimes.m", + "sha256": "04bded4d029cbdd8c48196c1d1fef951ebb142e395eea8986533dde478513989", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3823 + }, + { + "path": "@MClustData/LoadNeuralWaveforms.m", + "sha256": "ba7b7e1ba0e3abf477b1753a970513bd7ee6271a1e9d44733bbe3de48fa62622", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3834 + }, + { + "path": "@MClustData/LoadTetrodeData.m", + "sha256": "8a4e97cefa32177744ac079599037de4df7a7ea1ed57c15a8c6d33f54d985d74", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3387 + }, + { + "path": "@MClustData/MClustData.m", + "sha256": "98b92b3909f696aeba6204435aab172a50ba43cd825914482283bc8a69c8f99f", + "language": "MATLAB", + "lines": 116, + "truncated": false, + "block": 9, + "row": 4600 + }, + { + "path": "@MClustData/WriteCQfiles.m", + "sha256": "7a5dae0037141699f4342af8734773017e7f9a8f0cc7bdf2f0a71f73b0407b63", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3465 + }, + { + "path": "@MClustData/WriteTfiles.m", + "sha256": "52566ce4a6bede193129b178a18cfed17bc7a9706e5592e10185713221e46369", + "language": "MATLAB", + "lines": 112, + "truncated": false, + "block": 9, + "row": 4758 + }, + { + "path": "@MClustData/WriteWVfiles.m", + "sha256": "6ae7bb30c4418945d414d048c9f22e8069db2ee21ccd2105c30948ce97e43d4c", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3259 + }, + { + "path": "@MClustMainWindowClass/CreateMainWindow.m", + "sha256": "3d7859fe859ae18b2b0486ec436bf13c99a5b796ff1a3d445a47c7566363f8f7", + "language": "MATLAB", + "lines": 190, + "truncated": false, + "block": 9, + "row": 5477 + }, + { + "path": "@MClustMainWindowClass/MClustMainWindowClass.m", + "sha256": "07a36b242626f4637903bd4d98997a3d7602e0d82fec06e2ebaa32be35e04df2", + "language": "MATLAB", + "lines": 332, + "truncated": false, + "block": 9, + "row": 5582 + }, + { + "path": "@MClustMainWindowClass/Redraw.m", + "sha256": "6b1caf0092b5139a285ea5efb84d710673d741f96c342656176a0c7c001e6a29", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3453 + }, + { + "path": "@MClustSettings/FindAvailableClusterTypes.m", + "sha256": "27dff22c1ea124576084a519af83e8086840138c1475f8062b589103dba8a6ff", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3408 + }, + { + "path": "@MClustSettings/MClustSettings.m", + "sha256": "09bcd9f3a919ffcc16706756bdd3f2304271a1acc8c5ea559f0dcdf7a26ed3e6", + "language": "MATLAB", + "lines": 170, + "truncated": false, + "block": 9, + "row": 5206 + }, + { + "path": "@MClustSettings/PlaceWindow.m", + "sha256": "911601b3b25b1c7eeb5199bc794649a6ed0a7d175524b700db88f427cbd824b7", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3070 + }, + { + "path": "@MClustSettings/StoreWindowPlace.m", + "sha256": "f2be6f1c9800c1992f2375d385ae6ac943171592cab91a8ca81a4a49f97196f5", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3034 + }, + { + "path": "Features/Extra_Features/feature_PeakValleyDiff.m", + "sha256": "b81c85d17b4665b6050dfcbf8056fe7578fc494b38ddca372bef919b3c91c88c", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3596 + }, + { + "path": "Features/daub4.c", + "sha256": "a1a378823057b3632f6e55def0c8d765c64e4bc1b7eb3be0fa9d61448eabe373", + "language": "C", + "lines": 147, + "truncated": false, + "block": 9, + "row": 47 + }, + { + "path": "Features/feature_Energy.m", + "sha256": "a83e785f6c51903788d5cde3acfde14d3072947eebfedbb0ddf1869fb86c3bef", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3567 + }, + { + "path": "Features/feature_EnergyD1.m", + "sha256": "77752a7e08f98108be9c4654914202f501773f83da7fbe6c8fea2606ec7c5f16", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3566 + }, + { + "path": "Features/feature_Peak.m", + "sha256": "9f9e292173ae119c72303cf046083a8b5024b432955d10136766c69f657cfcd7", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3483 + }, + { + "path": "Features/feature_Peak6to11.m", + "sha256": "22564483eae7bb09a91ecc4d3040078a187b5bdfe01b1b436c81778fd75de143", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3531 + }, + { + "path": "Features/feature_PeakIndex.m", + "sha256": "ea6d2c81912b0e09b79bce9d23237410041dc144ad8ee1d35f2680d30f8f2c87", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3501 + }, + { + "path": "Features/feature_Time.m", + "sha256": "24af29df21906a123296b20f5cf879c8d4daf34d80b1523e5e6683b9b2dbd2b4", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3217 + }, + { + "path": "Features/feature_Valley.m", + "sha256": "3d24621ea89210a2b40d6b1867a11b4c96eae383d7e59c1c8a453e4dee721862", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3507 + }, + { + "path": "Features/feature_WavePC1.m", + "sha256": "260584d080eebd141bf392bc3147d6950a84c111a28af2f05176c5169c9ae74c", + "language": "MATLAB", + "lines": 144, + "truncated": false, + "block": 9, + "row": 5011 + }, + { + "path": "Features/feature_WaveletCoeffs.m", + "sha256": "6228996bb600ee54af02bc0267853b29cd2eb5a82aab2b1c61757c5e99721414", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 9, + "row": 4442 + }, + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "LoadingEngines/LoadH5.m", + "sha256": "6c9b20ba8af79e400633f3bc9f99b8ac020dc50df2135292e7f305607990ae9c", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 4103 + }, + { + "path": "LoadingEngines/LoadIntanSpikes.m", + "sha256": "9d850285d36a713eadf222dad3f76532a6d5baa64ef5eef27e4a68375e11966b", + "language": "MATLAB", + "lines": 125, + "truncated": false, + "block": 9, + "row": 4867 + }, + { + "path": "LoadingEngines/LoadSE_NeuralynxNT.m", + "sha256": "4724e550363a7784760882acf94fbb49084a451c075ae428697fd2424766261a", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3404 + }, + { + "path": "LoadingEngines/LoadSEfromCSC.m", + "sha256": "0841ee0d9e13049edd74f5539e09502b6d1dd81b19ca133ee277520caac2b63f", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 9, + "row": 4362 + }, + { + "path": "LoadingEngines/LoadTDT.m", + "sha256": "bb99cd469049d4870cd84598579a93ae46dad3dc2744419b887d85eb70880106", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 9, + "row": 4445 + }, + { + "path": "LoadingEngines/LoadTT_Axona0.cpp", + "sha256": "57633a1c3f3d225b0048244ffa4122d23d12523bb43b8c082f7c5c26fed3f811", + "language": "C++", + "lines": 586, + "truncated": false, + "block": 9, + "row": 925 + }, + { + "path": "LoadingEngines/LoadTT_NeuralynxNT.m", + "sha256": "92cd9328feba0b469abd69dedfc81bc6f8fb570c016b77e5296e256346be600e", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3401 + }, + { + "path": "LoadingEngines/LoadTT_openephys.m", + "sha256": "dc55d72fba19bcf06f1378ca6eb651ba389f4b8ff55937f132cf863c6acfe448", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4711 + }, + { + "path": "LoadingEngines/OpenEphysLoadingEngine.m", + "sha256": "a4ded3ab8e860493c5f39da0144a3f94befd76cc637ca82dd234d948c51d246c", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4591 + }, + { + "path": "LoadingEngines/SubCalls/LoadSE_NeuralynxNT0.cpp", + "sha256": "3b930a5c8a65a956e4aed1f7dbe6a4f93f6e6650255064a9b3c1ea03ffaabbc2", + "language": "C++", + "lines": 656, + "truncated": false, + "block": 9, + "row": 940 + }, + { + "path": "LoadingEngines/SubCalls/LoadTT_NeuralynxNT0.cpp", + "sha256": "8c54e37dd43d78007e03322b3f30277a96c594ef28d0e9c8ad1dfc8d3747718f", + "language": "C++", + "lines": 650, + "truncated": false, + "block": 9, + "row": 937 + }, + { + "path": "LoadingEngines/SubCalls/TDT2mat.m", + "sha256": "dcd91a0f4684cc7ec2c250f50f11817541880e43b07be484873583df8908bd61", + "language": "MATLAB", + "lines": 473, + "truncated": false, + "block": 9, + "row": 5807 + }, + { + "path": "LoadingEngines/SubCalls/TTI.m", + "sha256": "451055a7596ab161299834076b9d93d47cbab6beabdc93d39ab15195c879047d", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 9, + "row": 4191 + }, + { + "path": "LoadingEngines/SubCalls/TTIcallback.m", + "sha256": "49c008e68257d34676b48679819e7d646287eb3d344828090976fc05cdf0052e", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 9, + "row": 4410 + }, + { + "path": "LoadingEngines/load_open_ephys_data.m", + "sha256": "a74927d32b6b8634db120cf9ed9b5d49edd5248fd0b9b3c5706fa02d5fa0ac24", + "language": "MATLAB", + "lines": 472, + "truncated": false, + "block": 9, + "row": 5669 + }, + { + "path": "MClust.m", + "sha256": "9e02019c13bd49b977eb5835091f11db1b4779fb2da3660987771b1755eef3f3", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3425 + }, + { + "path": "MClust0.m", + "sha256": "6ed74e03b0959f1b631832d3f1a88cbd985b2832fba3ca45fa1ae75cf993044c", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 9, + "row": 3876 + }, + { + "path": "MClustVersion.m", + "sha256": "dfd8635faaa3d6d7e29b33d0f183a715db067c7eb9807431aeaa20167eb543b9", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 9, + "row": 2927 + }, + { + "path": "README.md", + "sha256": "e0b60c8926157f47656871114c900ea4fe267bdf6e61bfb8a3da72f75e46a998", + "language": "Text", + "lines": 4, + "truncated": false, + "block": 9, + "row": 14464 + }, + { + "path": "ResetMClust.m", + "sha256": "537d236700f016d89a5ecfe3a5ac95b5d03ebe8b738d58bfc6720cdaa71d04ad", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2918 + }, + { + "path": "RunClustBatch.m", + "sha256": "a27ace41d9c3b6c512754e3a89ed79494d73d9c7651626758ef18c61a8904902", + "language": "MATLAB", + "lines": 127, + "truncated": false, + "block": 9, + "row": 4814 + }, + { + "path": "Utilities/@ctsd/ctsd.m", + "sha256": "3c14aa6542a10e623c2493b7560184f58e679c0828ee85e8010869ee685c18f4", + "language": "MATLAB", + "lines": 110, + "truncated": false, + "block": 9, + "row": 4664 + }, + { + "path": "Utilities/@ctsd/data.m", + "sha256": "08b23f24f57938d44d5abf38a902a2f9afd8c8eada0bdda0874cfea0690e8248", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 3809 + }, + { + "path": "Utilities/@ctsd/mask.m", + "sha256": "ee976370c0c780f8da41eb80c2571ed4f74d385e4876374659eee4454872c1ff", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 3752 + }, + { + "path": "Utilities/@ctsd/restrict.m", + "sha256": "36411872afaace73a73a633d5f5a9556dc7ad2dd386e680912d024368ffb15bb", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3154 + }, + { + "path": "Utilities/@ctsd/smooth.m", + "sha256": "f0cbdf8818adab08a1da6445c5d4a05b63d90666831eddf9f2755697ea0a4bf5", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3353 + }, + { + "path": "Utilities/@ts/data.m", + "sha256": "f52451cdea416f9a9b49b5f47426e94c3f37478a171b02f7a708aefc176827f7", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 3802 + }, + { + "path": "Utilities/@ts/keep.m", + "sha256": "b73d61a836454d63ef0ee974d05df2bdf975dba8c8551c75da570f70b7d16b26", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 9, + "row": 2971 + }, + { + "path": "Utilities/@ts/restrict.m", + "sha256": "1f05a96a5f29d26a6c40bb66fa9041d10a4980099a95f6262361b343ea731ce6", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3372 + }, + { + "path": "Utilities/@ts/smooth.m", + "sha256": "bad70a1222b5afaef60cf19b23313910b0a883d05ada753558b38e56a2f9fc1e", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3339 + }, + { + "path": "Utilities/@ts/ts.m", + "sha256": "36be2cf46203cbf64c250731fbb454ee66d1511749c2d05efa99692da2649776", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4107 + }, + { + "path": "Utilities/@tsd/cat.m", + "sha256": "ce7d712353103f68f92e573c1dbbca0a761c01dd84a5f09008005e8759477dcc", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3398 + }, + { + "path": "Utilities/@tsd/data.m", + "sha256": "a51f129ba31ec8f4363ce8aeb1d13aeb00fbb11a4eb84f6089842d367c44cdf4", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3598 + }, + { + "path": "Utilities/@tsd/keep.m", + "sha256": "3bea437fc3a6b3e3bd96a3e2fc1545353d7c606271dcadb42fb3943a7c346d88", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3052 + }, + { + "path": "Utilities/@tsd/mask.m", + "sha256": "430dd8a67510908ea29f3ab0dd8917a2ab866b2d65a3aedc16db31c63c86bc9e", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 3838 + }, + { + "path": "Utilities/@tsd/merge.m", + "sha256": "ed75a65a1eb8f560b246edde3e5533165ed29d1d3a8b5816909408af80f4a150", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3263 + }, + { + "path": "Utilities/@tsd/removeNaNs.m", + "sha256": "3a58f80b24a28576531baff0256997e6b1398648bc44f7eba7a3c905dd7250bf", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3090 + }, + { + "path": "Utilities/@tsd/restrict.m", + "sha256": "2f1836a8db3d73b914927ca7440d19ae6efe1b788a5af470bd842b760b1f3010", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3172 + }, + { + "path": "Utilities/@tsd/tsd.m", + "sha256": "85b62f01757c7ec2541e2ad2b562255ce5231e5e1fc8123711c770002d8c1bd4", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 9, + "row": 4136 + }, + { + "path": "Utilities/FindFile.m", + "sha256": "065779e50e6f3328dbdd5dc7886eb02616f6c426ad7011f10ebc10defe4af2ef", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 3731 + }, + { + "path": "Utilities/FindFiles.m", + "sha256": "08021025e0c42371fb80221505ee7b86c733f92b2a18789a5552c05e010c3b9e", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 9, + "row": 3984 + }, + { + "path": "Utilities/LoadSpikes.m", + "sha256": "82661ab0ab0e9b3ef4754d6c4c92afd7417193d537d35fa53da31e7c02c19455", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 9, + "row": 4206 + }, + { + "path": "Utilities/SpcMex/ALGRAPH.c", + "sha256": "4385823d1034ee57b1a5c39983125394f80290d2e458fea50ab5aed5d0a3ba3f", + "language": "C", + "lines": 1088, + "truncated": false, + "block": 9, + "row": 149 + }, + { + "path": "Utilities/SpcMex/ALGRAPH.h", + "sha256": "80af0427e523f7a7d00ac7115f6c9b8c24f48f9fb55f4dd677d242804cc805c8", + "language": "C/C++", + "lines": 179, + "truncated": false, + "block": 9, + "row": 1647 + }, + { + "path": "Utilities/SpcMex/FAIRSPLIT.c", + "sha256": "da427533a24f2ce1684969d036196d41dbae70d834da4f02941f27a8e2be0737", + "language": "C", + "lines": 744, + "truncated": false, + "block": 9, + "row": 144 + }, + { + "path": "Utilities/SpcMex/FAIRSPLIT.h", + "sha256": "68061608199057d17388359460eb8bc59decc6fd8d2fec115eb43745372c5c09", + "language": "C/C++", + "lines": 98, + "truncated": false, + "block": 9, + "row": 1393 + }, + { + "path": "Utilities/SpcMex/L.c", + "sha256": "d81e984da666b2e4f1905d171e4bafb8b04103969ad1f7279801a92061c81eba", + "language": "C", + "lines": 252, + "truncated": false, + "block": 9, + "row": 82 + }, + { + "path": "Utilities/SpcMex/L.h", + "sha256": "041fb00101b6b8610899d1d31ab204ac8a279a06afab6c53f7e6b85a65b04868", + "language": "C/C++", + "lines": 81, + "truncated": false, + "block": 9, + "row": 1422 + }, + { + "path": "Utilities/SpcMex/MergeSort.c", + "sha256": "67c52679d4bd897e59180f62475f894688e9fa765b840c7352e74b6985cf9a76", + "language": "C", + "lines": 67, + "truncated": false, + "block": 9, + "row": 16 + }, + { + "path": "Utilities/SpcMex/MergeSort.h", + "sha256": "2b1910f7ee767fd88750c4e7599ffd13c3e7ac0ce3c280e4384824df728c99fd", + "language": "C/C++", + "lines": 13, + "truncated": false, + "block": 9, + "row": 1134 + }, + { + "path": "Utilities/SpcMex/SPC.c", + "sha256": "663d54aa79b19093f8caf4169a07dac7b27206414c6d939a4bb626df7f5c06cd", + "language": "C", + "lines": 572, + "truncated": false, + "block": 9, + "row": 142 + }, + { + "path": "Utilities/SpcMex/SPC.h", + "sha256": "8f5d15168528b30d405df77c5a193fede8540b1c55ca479a876c9786a5b7f2f6", + "language": "C/C++", + "lines": 33, + "truncated": false, + "block": 9, + "row": 1179 + }, + { + "path": "Utilities/SpcMex/spc_mex.c", + "sha256": "2b7754970d67857ec731fc6f6cadbbf13e3fe6db580f1a5d0dcb7cd05cd13927", + "language": "C", + "lines": 107, + "truncated": false, + "block": 9, + "row": 33 + }, + { + "path": "Utilities/extract_varargin.m", + "sha256": "37418e5e430724452886d5616cb38312b0004a35a9dea51f784bd129a7ca404d", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3297 + }, + { + "path": "Utilities/histcn.m", + "sha256": "ab214526755f4db5ec5e29e8abff853eeea9fe577025a3bf94a1e10adde15852", + "language": "MATLAB", + "lines": 138, + "truncated": false, + "block": 9, + "row": 4936 + }, + { + "path": "Utilities/popdir.m", + "sha256": "6fc76cc743913d5a1a69958a859f3b34b604e501811a935fd19f26f91759183c", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3431 + }, + { + "path": "Utilities/process_varargin.m", + "sha256": "a184efe23b183d64e3e6b1809c5fe930c9b36768f36b244cb17719bf51866fe6", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 9, + "row": 3374 + }, + { + "path": "Utilities/pushdir.m", + "sha256": "15db0d4badf6f331be825bd967ff108ba0b9d348624c4dffcb32cbc59abdc7ab", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3161 + }, + { + "path": "Utilities/selectalongfirstdimension.m", + "sha256": "cb2fb7c34a89adb6055dda0c4d3ca6c00b1778fcce6287243127e538c52e0288", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3573 + }, + { + "path": "Utilities/streq.m", + "sha256": "9d7b9b749f1e482858e1cb1228abbbcda60c727fe4e5b27c21bb0ce81595cf5d", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3113 + }, + { + "path": "_Extras/nonmodal_listdlg.m", + "sha256": "13fea449a1c71721ae08f49d4868c2c8b1c2b8c00d26195d6b97d089b5902c46", + "language": "MATLAB", + "lines": 117, + "truncated": false, + "block": 9, + "row": 4638 + } + ] +} \ No newline at end of file diff --git a/manifests/7b/github.com__colinbredenberg__oneirogen-hypothesis.json b/manifests/7b/github.com__colinbredenberg__oneirogen-hypothesis.json new file mode 100644 index 0000000000000000000000000000000000000000..6cce33b5993f394804cb16ac5f62e1cce8b5d59d --- /dev/null +++ b/manifests/7b/github.com__colinbredenberg__oneirogen-hypothesis.json @@ -0,0 +1,480 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/colinbredenberg/oneirogen-hypothesis", + "url": "https://github.com/colinbredenberg/oneirogen-hypothesis", + "host": "github.com", + "commit": "40dbd6de2ca131ebe291b47fd7ff7ff786a38f34", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "cb1b5baf7b69650e210091500275c981a0400acebaf47f6b6621f6f5b4bd5921", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2826 + }, + { + "path": "README.md", + "sha256": "16fab7435177794df1de8022fbdfffcf43ab87f63298e87b634dbe5f7d799213", + "language": "Text", + "lines": 85, + "truncated": false, + "block": 9, + "row": 14579 + }, + { + "path": "beyond_backprop/algorithms/__init__.py", + "sha256": "011e20ad4573a9d757b251d6a3b71f8ab02c4e66306370480182bcfad7398c5b", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7317 + }, + { + "path": "beyond_backprop/algorithms/algorithm.py", + "sha256": "0dc028485d498fab441eb07c273b07e50bf13fc6b4688ea875dabb239dc7eaf4", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 8902 + }, + { + "path": "beyond_backprop/algorithms/algorithm_test.py", + "sha256": "b6917c6e2872ec831dafa434db8581b71e603424786309d42d5305b0a09e0b2c", + "language": "Python", + "lines": 339, + "truncated": false, + "block": 9, + "row": 11282 + }, + { + "path": "beyond_backprop/algorithms/backprop.py", + "sha256": "39f5d99d48432453e32958949b9d70cd9bf21287509fec47f016d0f8f6c851da", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9338 + }, + { + "path": "beyond_backprop/algorithms/backprop_test.py", + "sha256": "1c3a87bff152be060f97a23bdd344c0135506eb6ac58b6700ae81554db6d4e3b", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 9, + "row": 6552 + }, + { + "path": "beyond_backprop/algorithms/common/graph_utils.py", + "sha256": "71b2db86b1d36d466f9d4fdf28f1f34a298f2e9309db7e437e9dd2002abc3638", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7016 + }, + { + "path": "beyond_backprop/algorithms/common/layer.py", + "sha256": "8c90efb0fded83281da8e21075f2a7eca3bdfe02341d70abd7fa04888be237e0", + "language": "Python", + "lines": 361, + "truncated": false, + "block": 9, + "row": 11558 + }, + { + "path": "beyond_backprop/algorithms/image_classification.py", + "sha256": "b7751003c47543693df4543d91a0bc21312d5809d5b43adaa3ac081415b8e4b4", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 10008 + }, + { + "path": "beyond_backprop/algorithms/image_classification_test.py", + "sha256": "9875c4ab32200ac2acc196431bdbf322724f5bc099732909e1b6904425097c44", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 9, + "row": 9046 + }, + { + "path": "beyond_backprop/algorithms/wake_sleep/callbacks.py", + "sha256": "0699eec3c3addbe499825f5955e0eea02f405ff325884206a92c78e63df29c92", + "language": "Python", + "lines": 694, + "truncated": false, + "block": 9, + "row": 12331 + }, + { + "path": "beyond_backprop/algorithms/wake_sleep/inf_gen_network.py", + "sha256": "34666527431dab49767f55ca7d9c5cfe89ee3e9f40161a606b071a73819a46da", + "language": "Python", + "lines": 216, + "truncated": false, + "block": 9, + "row": 10897 + }, + { + "path": "beyond_backprop/algorithms/wake_sleep/rm_wake_sleep.py", + "sha256": "c0c374809b2df11934c1d6b8de36863ffbdd2ef91f4f44acb1a6fe0527071ead", + "language": "Python", + "lines": 198, + "truncated": false, + "block": 9, + "row": 10508 + }, + { + "path": "beyond_backprop/algorithms/wake_sleep/wake_sleep_layered_models.py", + "sha256": "8426e9b4f45d7e775d3821ba3a7d19c2b87e8890358f73cd4feadf76c6ae737e", + "language": "Python", + "lines": 287, + "truncated": false, + "block": 9, + "row": 11192 + }, + { + "path": "beyond_backprop/configs/__init__.py", + "sha256": "22eef9fb0f7f9e53e69c1fea280ee761a69a1dfef1b53ac398af0de2fd96577e", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6101 + }, + { + "path": "beyond_backprop/configs/config.py", + "sha256": "a4bc064eecffafb86e85284c7f3d3901824a2ae537536cbce974c2c711a5f5d2", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7454 + }, + { + "path": "beyond_backprop/configs/datamodule/__init__.py", + "sha256": "88f62e596f81286038977602dabba8d1be0fe3951db85be424820efc2b294f50", + "language": "Python", + "lines": 144, + "truncated": false, + "block": 9, + "row": 9184 + }, + { + "path": "beyond_backprop/configs/lr_scheduler/__init__.py", + "sha256": "2eadfd5a4c39833e3570ba601759fce654d23524f211c1b33fa152f6f50a0660", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7311 + }, + { + "path": "beyond_backprop/configs/optimizer/__init__.py", + "sha256": "3c98cf7cb90bfb2bb82de77bd7f42e2a81578ff9ee84bf6469f0ebbb19df0084", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7504 + }, + { + "path": "beyond_backprop/datamodules/__init__.py", + "sha256": "a4b156f1721ce20dd5c687302f80fadb4ceab33fd96a67585300ff22cb0042bc", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6557 + }, + { + "path": "beyond_backprop/datamodules/cifar10_datamodule.py", + "sha256": "19df88712dc8eb0f6e6f48978dc299f278b13d3879dd1116b42445ece59a56fa", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9031 + }, + { + "path": "beyond_backprop/datamodules/datamodule.py", + "sha256": "206dc48f11a1fbcb66329840a572f60124189464fd6c69dcc8a2a78551a9e81b", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6968 + }, + { + "path": "beyond_backprop/datamodules/dataset_normalizations.py", + "sha256": "74f732dfab0e2df646161f5786499ff99ded4a392e4f94d5a97499a11182add6", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 9, + "row": 7343 + }, + { + "path": "beyond_backprop/datamodules/fashion_mnist_datamodule.py", + "sha256": "aee115e41e8868d379fbb7b89d98a936958736db52e58fce7bf21616820403af", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 8532 + }, + { + "path": "beyond_backprop/datamodules/image_classification.py", + "sha256": "ad315ce1dd4db6f7adcba255b269b3bdd926cf52004b099c25a2053751dfd5ea", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7546 + }, + { + "path": "beyond_backprop/datamodules/imagenet32.py", + "sha256": "2ffbed377c7730abf00bb85f26c11e7fce7e079c6daa77ecf1a3de8bbf50a8da", + "language": "Python", + "lines": 352, + "truncated": false, + "block": 9, + "row": 11315 + }, + { + "path": "beyond_backprop/datamodules/imagenet32_test.py", + "sha256": "72c1f4ea9052a7f549fe253872fd34fab057c24ecbda13fa12089fa55e8faff7", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 9, + "row": 7224 + }, + { + "path": "beyond_backprop/datamodules/inaturalist.py", + "sha256": "ec069dabcc33f7746277a271f84fc9f801a8acbe039acd5999a13b38b5f81a86", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 9, + "row": 10052 + }, + { + "path": "beyond_backprop/datamodules/inaturalist_test.py", + "sha256": "393d3f831f2a0e6b876eae2893d43c20e895d906d46c1b3e0a49ee3d3e312109", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 8130 + }, + { + "path": "beyond_backprop/datamodules/mnist_datamodule.py", + "sha256": "70e4c5ff507a96b2b8ddc9406a991f5e4b60f7c16b9bc0da4354b63bb6d1c5e3", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8424 + }, + { + "path": "beyond_backprop/datamodules/vision_datamodule.py", + "sha256": "1f349c73b1a5ba1521de4fa0e8ee01d9aa39cd87a0b9745da421170270ad30d3", + "language": "Python", + "lines": 239, + "truncated": false, + "block": 9, + "row": 10670 + }, + { + "path": "beyond_backprop/experiment.py", + "sha256": "e944dabdf094d8cb83c579512a2d7a8d65818ba74ec395c8ce548cea2b4ca479", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 9, + "row": 9631 + }, + { + "path": "beyond_backprop/networks/__init__.py", + "sha256": "04aac7389a30011ffdb70c6cca0c1fd27f4cb35dbb564ff754bb718f35099dbd", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6926 + }, + { + "path": "beyond_backprop/networks/conv_architecture.py", + "sha256": "2e358e490be2c4482d5c60f4c57666416cf96283f54b3ef68918852ace666ba1", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 8892 + }, + { + "path": "beyond_backprop/networks/conv_architecture_test.py", + "sha256": "32564243e91e3a4bdda30da41e536b7d196a5115670dce70b7078185edb0d3dd", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7775 + }, + { + "path": "beyond_backprop/networks/fcnet.py", + "sha256": "0f186e1034b785ec8692053c96ce543d13f6317625e543f46cb412653727d6be", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 9819 + }, + { + "path": "beyond_backprop/networks/invertible.py", + "sha256": "75f41cbb16a05df54a42f085e7092d993227c42ff02033a8158426d3f8cbf9ba", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 9148 + }, + { + "path": "beyond_backprop/networks/layers.py", + "sha256": "aae2f76c76a834e46a1969d43d4d284a9ed8d413ab833fcdf825003dccf16ba0", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 9, + "row": 9102 + }, + { + "path": "beyond_backprop/networks/lenet.py", + "sha256": "086d7f295754279f3c3afa58bb167d59a0981a10bcffb783db41db3a715bf3df", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 8478 + }, + { + "path": "beyond_backprop/networks/lenet_test.py", + "sha256": "56c7b51594374aeb39d7000163822b7ff2678d893b109992b3d6fe128790a42c", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 9, + "row": 6566 + }, + { + "path": "beyond_backprop/networks/network.py", + "sha256": "169d51ba96585095f01304e2b4abf7d03de447ae159b7391bedbeb27da9fca07", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7552 + }, + { + "path": "beyond_backprop/networks/network_test.py", + "sha256": "77e41ff0fc2b4de8c00a9f357aee88cf89071b42519c0ad968a8db6df9839170", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 8624 + }, + { + "path": "beyond_backprop/networks/resnet.py", + "sha256": "f488380f02413a176f06904e796eac1c976fc4e0a1fec40f597828d4be8d6187", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 9, + "row": 9871 + }, + { + "path": "beyond_backprop/networks/resnet_test.py", + "sha256": "f49a5b124747668f4053e74023bca797381770816166031056956a25ef0240e5", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 6934 + }, + { + "path": "beyond_backprop/networks/simple_vgg.py", + "sha256": "faada598165954dfa7ca9ca07d24432007391865aa718b10938110864693164d", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 9, + "row": 8482 + }, + { + "path": "beyond_backprop/networks/simple_vgg_test.py", + "sha256": "31bf9c463ae311d5fca2e7432bba737f5ec28d58c6a6cd508a882ef6ad5a9c90", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 9, + "row": 6587 + }, + { + "path": "beyond_backprop/utils/hydra_utils.py", + "sha256": "d1e0250f222be1082e54307927f2c0ed56f1f81870577284499b54314d56fed1", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 9, + "row": 8777 + }, + { + "path": "beyond_backprop/utils/types.py", + "sha256": "e485f3cc77f9a97091fc3e91a5b79c8492dc3945690618b3386b6155270fdd62", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7533 + }, + { + "path": "beyond_backprop/utils/utils.py", + "sha256": "85a079275e5a87018330beff200189f8b5ea6e5e17cf98dc730627cec0e0b7f5", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 9, + "row": 9681 + }, + { + "path": "main.py", + "sha256": "a6e001a718d3e819d67b7f376c6d7a4c8c749e54c021c0156f0cda6767cdd907", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9521 + }, + { + "path": "main_test.py", + "sha256": "098a5f8a4ec4ca0bc50446b58cedf0ccb17147c14d146dab62bc7240068a614c", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 9, + "row": 9391 + } + ] +} \ No newline at end of file diff --git a/manifests/7c/github.com__sukiyakip__rest.json b/manifests/7c/github.com__sukiyakip__rest.json new file mode 100644 index 0000000000000000000000000000000000000000..aa429c595af89292a04f001341d25c2cee142332 --- /dev/null +++ b/manifests/7c/github.com__sukiyakip__rest.json @@ -0,0 +1,147 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/sukiyakip/rest", + "url": "https://github.com/SukiyakiP/REST", + "host": "github.com", + "commit": "1b267c4c47023e797f0a28c45afdd56e12785a91", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "ArtifactFilter.py", + "sha256": "3c7cf8a7666f0f86612065b5cfd39839bf6c38be669fa2d3a480dad1d533ba5c", + "language": "Python", + "lines": 259, + "truncated": false, + "block": 9, + "row": 10866 + }, + { + "path": "ArtifactInjection.py", + "sha256": "c73913d4a5859d4657a662170b0e1466556e596090f38ecfcd94bb1536e4d2e6", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 9, + "row": 11044 + }, + { + "path": "Data_compile.py", + "sha256": "22e5d1e6e3d861dd6d518a2bd3d51e0a24b41d81317f5133810c913ccf750a91", + "language": "Python", + "lines": 408, + "truncated": false, + "block": 9, + "row": 11585 + }, + { + "path": "Inference.py", + "sha256": "ffd18fd566f993f4aa2d985da13a2590272cf1e9e68c64b5cf62cb6c83fc0412", + "language": "Python", + "lines": 236, + "truncated": false, + "block": 9, + "row": 10893 + }, + { + "path": "Inference_GUI.py", + "sha256": "c6ea45d0f9c02c2622d7697a7b3a4131a066ebeba54414d79830153dbe5066d6", + "language": "Python", + "lines": 633, + "truncated": false, + "block": 9, + "row": 12176 + }, + { + "path": "Inference_GUI_CPU.py", + "sha256": "c73fda7e2212b8e0450aa2824e591de1c6b5f754c38f2cdb2f45c1fca540bd9b", + "language": "Python", + "lines": 617, + "truncated": false, + "block": 9, + "row": 12129 + }, + { + "path": "LICENSE", + "sha256": "014eb05ff5bb2acf6b3fbf3a4b00ffb68ccd4746b271380cd61b35b1fa4a8324", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2764 + }, + { + "path": "README.md", + "sha256": "d205bc7010b725be7aad435a20726d733842577bdee1d75da41006dcdfe6df09", + "language": "Text", + "lines": 262, + "truncated": false, + "block": 9, + "row": 14714 + }, + { + "path": "RESTCORE.py", + "sha256": "f97083d17cd813fbda0f1e2e19383ec198c0b8b94fe56016327b5a100daf8c06", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8644 + }, + { + "path": "RESTutils.py", + "sha256": "3112a46d95bd004fefa79a3f9ae4478159accd51e19f63b5a0d3beafc4c2e3f9", + "language": "Python", + "lines": 735, + "truncated": false, + "block": 9, + "row": 12174 + }, + { + "path": "SleepDataset.py", + "sha256": "8ea38b1c10309cc2efed09e5086d490cb964f53f3d25ddf6fb516548a3df80e7", + "language": "Python", + "lines": 218, + "truncated": false, + "block": 9, + "row": 10743 + }, + { + "path": "Test_EDF.py", + "sha256": "9d26f36aeac936bb48b8805ca79a70c9d7195fb836dd0eae318ccfae704523e8", + "language": "Python", + "lines": 393, + "truncated": false, + "block": 9, + "row": 11434 + }, + { + "path": "Training.py", + "sha256": "779b92f85b4755bb0cf6109132b55a8e258b17256ea512c6393e33fbf143c40c", + "language": "Python", + "lines": 349, + "truncated": false, + "block": 9, + "row": 11530 + }, + { + "path": "rthook_torch_dll.py", + "sha256": "950e541512bdb079f18e958ff95ed341a8e3d5f1ce2ba252de1380a59de6c44a", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7768 + }, + { + "path": "tune_artifact_filter.py", + "sha256": "ddb5a1ddde8f1c2f3657ddbd16f86b5614180bdf14d29e99e8baad3ab36a2f7e", + "language": "Python", + "lines": 443, + "truncated": false, + "block": 9, + "row": 11677 + } + ] +} \ No newline at end of file diff --git a/manifests/7c/zenodo__19177475.json b/manifests/7c/zenodo__19177475.json new file mode 100644 index 0000000000000000000000000000000000000000..8644bbb6a26ee04cc54b91608ad314e00bb5be47 --- /dev/null +++ b/manifests/7c/zenodo__19177475.json @@ -0,0 +1,21 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19177475", + "url": "https://doi.org/10.5281/zenodo.19177475", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "HDCI_Net_Complete.ipynb", + "sha256": "b839799eca6cf50c8260aea31010a77b73fea90106b62c0922b54ff949f0eefe", + "language": "Jupyter", + "lines": 209, + "truncated": false, + "block": 9, + "row": 2351 + } + ] +} \ No newline at end of file diff --git a/manifests/7d/zenodo__592253.json b/manifests/7d/zenodo__592253.json new file mode 100644 index 0000000000000000000000000000000000000000..0fae638812d288ee310380d913c9197e98ae2ea9 --- /dev/null +++ b/manifests/7d/zenodo__592253.json @@ -0,0 +1,2091 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:592253", + "url": "10.5281/zenodo.592253", + "host": "zenodo.org", + "commit": "", + "license": "LGPL-3.0", + "license_confirmed_by": "license file LICENCE.md", + "redistribution": "yes", + "files": [ + { + "path": "CoreProtocols/AreaSummationStateInfo.m", + "sha256": "dfb671a12967a6f4f4db842e65a7ffd0ed7b782df471ade87dd0eb2b3ff220fc", + "language": "MATLAB", + "lines": 383, + "truncated": false, + "block": 9, + "row": 5750 + }, + { + "path": "CoreProtocols/Back_PropagationStateInfo.m", + "sha256": "83c8622376e98673360a3dbd09963a621c0cf55902cbe4894036b8e8babdfe61", + "language": "MATLAB", + "lines": 452, + "truncated": false, + "block": 9, + "row": 5805 + }, + { + "path": "CoreProtocols/ColourGratingStateInfo.m", + "sha256": "9c7debdf464866d5baf516797fe2f37478b971da2b6a9ac8e7a484e7006668d7", + "language": "MATLAB", + "lines": 383, + "truncated": false, + "block": 9, + "row": 5757 + }, + { + "path": "CoreProtocols/DotColourStateInfo.m", + "sha256": "4f41334ffeccc50cd9f5771888b85e2658010fc9e8a9b958371a59ed7176ca65", + "language": "MATLAB", + "lines": 368, + "truncated": false, + "block": 9, + "row": 5696 + }, + { + "path": "CoreProtocols/DotDirectionStateInfo.m", + "sha256": "de6a16a0da5890a74223513a1843356f9f1a33cd2d2458aa0d669c4e674ffd60", + "language": "MATLAB", + "lines": 354, + "truncated": false, + "block": 9, + "row": 5667 + }, + { + "path": "CoreProtocols/FastRFMapperStateInfo.m", + "sha256": "1a37946c546ba6da1e60730e5798660338411ddb6273eb15d8985f02e8fe3de9", + "language": "MATLAB", + "lines": 281, + "truncated": false, + "block": 9, + "row": 5487 + }, + { + "path": "CoreProtocols/FigureGroundStateInfo.m", + "sha256": "50b22d5a244caa9fa13122ce61d0ebcef4cd32790a743a0e7fbcf563a0a2719b", + "language": "MATLAB", + "lines": 426, + "truncated": false, + "block": 9, + "row": 5747 + }, + { + "path": "CoreProtocols/FixationOnly.m", + "sha256": "899a3987dc59d092b94349636a660303e3b4146258619b05a0845831e0fbe2dd", + "language": "MATLAB", + "lines": 338, + "truncated": false, + "block": 9, + "row": 5685 + }, + { + "path": "CoreProtocols/FixationTrainingAnimatedStateInfo.m", + "sha256": "bbe7681d451a91e1345dccb72f91c1ae9814f5ba8d4382495dfeb8650225aff6", + "language": "MATLAB", + "lines": 375, + "truncated": false, + "block": 9, + "row": 5734 + }, + { + "path": "CoreProtocols/FixationTrainingDistractorStateInfo.m", + "sha256": "26a00b8340f85e14ca393a92c7875991ec42e282a9e50cd8926819bfdfa2fbfe", + "language": "MATLAB", + "lines": 391, + "truncated": false, + "block": 9, + "row": 5745 + }, + { + "path": "CoreProtocols/FixationTrainingStateInfo.m", + "sha256": "711fbf28629606d9be716fc1aedf5a1dcea90ed1503f506c384ec56291a276d5", + "language": "MATLAB", + "lines": 364, + "truncated": false, + "block": 9, + "row": 5719 + }, + { + "path": "CoreProtocols/Isoluminant_Colours_StateInfo.m", + "sha256": "023c8501071e02ecd0c0925cebfa1cd1d0c87fa798f93681d5eb275116048bdc", + "language": "MATLAB", + "lines": 496, + "truncated": false, + "block": 9, + "row": 5851 + }, + { + "path": "CoreProtocols/OrientationTuningStateInfo.m", + "sha256": "a00b50cb4d380a8af3a3a4b07c6498e113f8c9272feb339d0d5d4499855c1159", + "language": "MATLAB", + "lines": 471, + "truncated": false, + "block": 9, + "row": 5826 + }, + { + "path": "CoreProtocols/PupillaryReflex.m", + "sha256": "dd73057f10be5db1303e99b91548b22744325b18b2ce6da75c2841cfde2eb963", + "language": "MATLAB", + "lines": 440, + "truncated": false, + "block": 9, + "row": 5810 + }, + { + "path": "CoreProtocols/RFLocaliserStateInfo.m", + "sha256": "ed6295648411b70dbf1b5d4be8e432f3081acb8c5e10a1852c28e825def68736", + "language": "MATLAB", + "lines": 407, + "truncated": false, + "block": 9, + "row": 5736 + }, + { + "path": "CoreProtocols/RevCorStateInfo.m", + "sha256": "0ac67a05e5c2e2dc08e55b0659a8690d5d1e2fbe961ae768618944d254436af0", + "language": "MATLAB", + "lines": 492, + "truncated": false, + "block": 9, + "row": 5843 + }, + { + "path": "CoreProtocols/SFTFStateInfo.m", + "sha256": "750a116a608391c3c34a3fa42fc94d7b4675f3ec2b378f4aa348803ddd953809", + "language": "MATLAB", + "lines": 241, + "truncated": false, + "block": 9, + "row": 5490 + }, + { + "path": "CoreProtocols/SaccadePhospheneStateInfo.m", + "sha256": "fa1c128e324ef134bf2139564f426a3a2f65c109b4f77a65b10f209fd52e59d8", + "language": "MATLAB", + "lines": 525, + "truncated": false, + "block": 9, + "row": 5853 + }, + { + "path": "CoreProtocols/Saccade_AntiSaccade.m", + "sha256": "62c9e05a857c84dad5945c569ca309d78672cd7c188a2588e0af44e25072ed39", + "language": "MATLAB", + "lines": 561, + "truncated": false, + "block": 9, + "row": 5855 + }, + { + "path": "CoreProtocols/Saccade_AntiSaccade_TRAIN_1.m", + "sha256": "8c4881bd6c4062d12e77280c3304b0c00135c94a0eed355132ad4a212e797c1f", + "language": "MATLAB", + "lines": 547, + "truncated": false, + "block": 9, + "row": 5846 + }, + { + "path": "CoreProtocols/Saccadic_Countermanding.m", + "sha256": "86022597db613cfef8709f45001dce3d483d04cb4abaa01d053c88acfd73ee89", + "language": "MATLAB", + "lines": 492, + "truncated": false, + "block": 9, + "row": 5834 + }, + { + "path": "CoreProtocols/Saccadic_DoubleStep.m", + "sha256": "fea622719d524ac5d675029b28f55741881d7cb19a3bc9858e4b6dec55d028b9", + "language": "MATLAB", + "lines": 457, + "truncated": false, + "block": 9, + "row": 5789 + }, + { + "path": "CoreProtocols/Saccadic_DoubleStep_TRAIN_1.m", + "sha256": "a23556ed02e1f3a633590fad25018ddf4cbbf6cd8c9802188ef59308196f6ab0", + "language": "MATLAB", + "lines": 471, + "truncated": false, + "block": 9, + "row": 5817 + }, + { + "path": "CoreProtocols/TwoFigureGroundStateInfo.m", + "sha256": "b1695b56334ab8da597cc614a1683277af3b0f406db80dee1db5bd1fa0c5d697", + "language": "MATLAB", + "lines": 273, + "truncated": false, + "block": 9, + "row": 5566 + }, + { + "path": "CoreProtocols/Two_Images.m", + "sha256": "5fd83d858ecbfe4f8ddff3ff82a2a025413fe5343af2835b549d3a3a4e4c19b7", + "language": "MATLAB", + "lines": 445, + "truncated": false, + "block": 9, + "row": 5811 + }, + { + "path": "CoreProtocols/fNIRS.m", + "sha256": "8a2f7d0ecf92fa7a851bda94bbdae1d0f785e849ba13850ffd14eeb2228e6ad1", + "language": "MATLAB", + "lines": 336, + "truncated": false, + "block": 9, + "row": 5683 + }, + { + "path": "DefaultStateInfo.m", + "sha256": "4494ebb6433e43f52773ea1ba60ce43926b51b1043a83e6448923d63cf420f1d", + "language": "MATLAB", + "lines": 515, + "truncated": false, + "block": 9, + "row": 5871 + }, + { + "path": "LICENCE.md", + "sha256": "5a567cbf43a20910a80e0f9ad8e1a0ea28143b1861f6c31a0d1bc0ed29e247d8", + "language": "License", + "lines": 157, + "truncated": false, + "block": 9, + "row": 2895 + }, + { + "path": "README.md", + "sha256": "ec815eff2ea3c65d5b0f8570db87b653d4846d334d99a142ad4ca5464400bc55", + "language": "Text", + "lines": 103, + "truncated": false, + "block": 9, + "row": 14732 + }, + { + "path": "addOptickaToPath.m", + "sha256": "929f20479a0697bcf1b758bf6ef541ed4c472f217fa2ae6f347dadbd51866268", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 4017 + }, + { + "path": "analysis/LFPAnalysis.m", + "sha256": "133b0d0fea63c1498f9556079f69c53adcd22435b379499b531469abe7c97cdd", + "language": "MATLAB", + "lines": 3106, + "truncated": false, + "block": 9, + "row": 6014 + }, + { + "path": "analysis/LFPMeta.m", + "sha256": "fd557efc3c445615fa515ff743197a829dd7605b31ce6247aff182964ea6a716", + "language": "MATLAB", + "lines": 897, + "truncated": false, + "block": 9, + "row": 5878 + }, + { + "path": "analysis/analysisCore.m", + "sha256": "cfc8b912b2324dbbc9279241331730dfa69e551e78ad71d41d309a70f7e5f719", + "language": "MATLAB", + "lines": 1373, + "truncated": false, + "block": 9, + "row": 5958 + }, + { + "path": "analysis/eyelinkAnalysis.m", + "sha256": "a7579b1980e59f686d293bc7d26779fdc132bf404e5900e6e895a8ac586f9942", + "language": "MATLAB", + "lines": 2279, + "truncated": false, + "block": 9, + "row": 6004 + }, + { + "path": "analysis/iRecAnalysis.m", + "sha256": "3a611fc0d4a6d9624660451c14be6e63a28cbce67110ee84363bb22d2d5dccc6", + "language": "MATLAB", + "lines": 2031, + "truncated": false, + "block": 9, + "row": 5992 + }, + { + "path": "analysis/spikeAnalysis.m", + "sha256": "af404bd02dda0fbaf372c804c4b8ec0bcce84e1b113a4d2dbc1e57abe0eb1fb6", + "language": "MATLAB", + "lines": 1503, + "truncated": false, + "block": 9, + "row": 5972 + }, + { + "path": "analysis/tobiiAnalysis.m", + "sha256": "6d2c37a4ecb7df215f9d00b9ba21f2606e44de10383faae47f3b57ea585d8e3e", + "language": "MATLAB", + "lines": 2232, + "truncated": false, + "block": 9, + "row": 6003 + }, + { + "path": "calibration/I1Demo.m", + "sha256": "edae73a2e98b94883dbef33f8934808dfdade6e1786cb46b4b7ae212c4220b44", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3926 + }, + { + "path": "calibration/calibrateLuminance.m", + "sha256": "bac3bde778fdf910f2c0f031a04cde09b3ce088550cbe1a497780a0717c79aed", + "language": "MATLAB", + "lines": 1468, + "truncated": false, + "block": 9, + "row": 5965 + }, + { + "path": "calibration/calibrateSize.m", + "sha256": "6c1bdfbe5f89b2116290a8ddfd9a25881dcb3847f74a880b7239af913e912d6e", + "language": "MATLAB", + "lines": 187, + "truncated": false, + "block": 9, + "row": 5208 + }, + { + "path": "calibration/ccal.m", + "sha256": "9287142b2aff381542bb2deb8fbe56d47c88f85c186e29c2b52401807bf4f2e9", + "language": "MATLAB", + "lines": 391, + "truncated": false, + "block": 9, + "row": 5636 + }, + { + "path": "calibration/colourManager.m", + "sha256": "261d7adebd0db452d2e08bb226ed5e730624488b90fbedefbc81e4361274baf4", + "language": "MATLAB", + "lines": 361, + "truncated": false, + "block": 9, + "row": 5568 + }, + { + "path": "communication/alyxManager.m", + "sha256": "0a6a880527accfe929a2e3dab8d145062fe1667d67ec90c09f30ee25334a4980", + "language": "MATLAB", + "lines": 1573, + "truncated": false, + "block": 9, + "row": 5983 + }, + { + "path": "communication/arduinoIOPort.m", + "sha256": "ab429e7a90edc73bf3d82eabde2f1cad405bc328a71e26deb5bca0f83236f8d0", + "language": "MATLAB", + "lines": 620, + "truncated": false, + "block": 9, + "row": 5876 + }, + { + "path": "communication/arduinoManager.m", + "sha256": "376dfcb80f6e62a49e7be774a9c707c1f7fd62d29101b31080c09bbfd1131448", + "language": "MATLAB", + "lines": 448, + "truncated": false, + "block": 9, + "row": 5689 + }, + { + "path": "communication/arduinoSerial.m", + "sha256": "13b4a0fa431f584dcf9ad33ab17eaec9f606df06c0766401d8eca9689832ff9d", + "language": "MATLAB", + "lines": 2366, + "truncated": false, + "block": 9, + "row": 6002 + }, + { + "path": "communication/arduinoSerialPort.m", + "sha256": "1c243aa2004844438db6799cfabe4efc7b141567831ba0675be7a3ece3fa32b6", + "language": "MATLAB", + "lines": 2153, + "truncated": false, + "block": 9, + "row": 5996 + }, + { + "path": "communication/awsManager.m", + "sha256": "4143b553edba0d5961a2610a7b7b1b7af8432d670ad3750d1be827887f5c7881", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 9, + "row": 4439 + }, + { + "path": "communication/dPixxManager.m", + "sha256": "cf653407ad552317c898b5bda33bda505312b68fc975d2b55fc6c17279423753", + "language": "MATLAB", + "lines": 311, + "truncated": false, + "block": 9, + "row": 5502 + }, + { + "path": "communication/dataConnection.m", + "sha256": "df76615d68a0821c9249d5fa9f7edaacbc05473fcc43321133dc795fed9dce0e", + "language": "MATLAB", + "lines": 1188, + "truncated": false, + "block": 9, + "row": 5920 + }, + { + "path": "communication/dumpmsgpack.m", + "sha256": "ecb005816f6c59d8c4a2021e9b33a8b31f993985c1b50e1043561fd9bbb5efcb", + "language": "MATLAB", + "lines": 268, + "truncated": false, + "block": 9, + "row": 5462 + }, + { + "path": "communication/eyeOccluder.m", + "sha256": "211f3edf9f31df370517a0a91b82e36f45d41f9e397acf59d8ea1d7c3c327422", + "language": "MATLAB", + "lines": 90, + "truncated": false, + "block": 9, + "row": 4116 + }, + { + "path": "communication/ioManager.m", + "sha256": "2f58a37a7ee7654d9d75fda1835d018e82eeff54c0de1102c64d843bef7ca131", + "language": "MATLAB", + "lines": 269, + "truncated": false, + "block": 9, + "row": 5299 + }, + { + "path": "communication/joystickManager.m", + "sha256": "d7f50fd292459088316823e243a3442368a15e6d7e2d2aa249bbffa140956601", + "language": "MATLAB", + "lines": 126, + "truncated": false, + "block": 9, + "row": 4714 + }, + { + "path": "communication/jzmqConnection.m", + "sha256": "279449cbd8c2d9e5acc998aa8e5c729f032ebe02ebfd7bbf74276668c7cc3884", + "language": "MATLAB", + "lines": 741, + "truncated": false, + "block": 9, + "row": 5870 + }, + { + "path": "communication/labJack.m", + "sha256": "1c2021853fd21c75c0c70069bf61fc49c303f03170268c045b1822097af8be2f", + "language": "MATLAB", + "lines": 913, + "truncated": false, + "block": 9, + "row": 5913 + }, + { + "path": "communication/labJackT.m", + "sha256": "d501cf99fdcc0b12b729d37d9680c6608bfc7c9cabc20d341958753f4eae7b27", + "language": "MATLAB", + "lines": 914, + "truncated": false, + "block": 9, + "row": 5898 + }, + { + "path": "communication/magstimManager.m", + "sha256": "bce425b29beacf76af37eacac11c933231a71249e4cb31e354dcd39b5d0653ef", + "language": "MATLAB", + "lines": 130, + "truncated": false, + "block": 9, + "row": 4819 + }, + { + "path": "communication/nirSmartManager.m", + "sha256": "17df90987f7911707fa033f847851f7dcb092e41ca3df44fc32b4705548823cc", + "language": "MATLAB", + "lines": 284, + "truncated": false, + "block": 9, + "row": 5373 + }, + { + "path": "communication/parsemsgpack.m", + "sha256": "94f521876195577a9cafebc55fe8e262e41a35421ca88857a02b238f82738112", + "language": "MATLAB", + "lines": 196, + "truncated": false, + "block": 9, + "row": 5288 + }, + { + "path": "communication/plusplusManager.m", + "sha256": "513c8da1b0f3a196914df990788da260b89c035c7a06bfc3cd923771f4b3c57b", + "language": "MATLAB", + "lines": 453, + "truncated": false, + "block": 9, + "row": 5671 + }, + { + "path": "communication/rewardManager.m", + "sha256": "ab31e55f236cd4a77c523e1033a43e72a5e7a2ff1fb19292b14408964e6ed396", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 9, + "row": 3152 + }, + { + "path": "communication/runServer.m", + "sha256": "04b75ea5f19dc0d5192caf455142b531df91deb72d7d361f06a5e9c462a7cb15", + "language": "MATLAB", + "lines": 1, + "truncated": false, + "block": 9, + "row": 2917 + }, + { + "path": "communication/sendSerialIOPort.m", + "sha256": "2cd491de8ab3055b98b55301e072abc4df429dd5f14704d4d1fb457234e9d833", + "language": "MATLAB", + "lines": 149, + "truncated": false, + "block": 9, + "row": 4949 + }, + { + "path": "communication/touchManager.m", + "sha256": "afc2920609f2041b00b0618ef6d38685d8724b367c3fc8f44fd98c826b93a127", + "language": "MATLAB", + "lines": 896, + "truncated": false, + "block": 9, + "row": 5880 + }, + { + "path": "communication/zmqConnection.m", + "sha256": "004cf273d7748d128e769e80d3ea6468108ccb72f6b6bb25f5127338bd968246", + "language": "MATLAB", + "lines": 599, + "truncated": false, + "block": 9, + "row": 5823 + }, + { + "path": "eyetracker/edfmex.m", + "sha256": "be78cdddac08d57351cfc613749d3cfe8ce33e0f35b2a434c4805175cd0dca77", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 9, + "row": 4888 + }, + { + "path": "eyetracker/eyelinkCustomCallback.m", + "sha256": "1f3c3b4e36d69c3da154485f6c934613400058e26f5a6464189918b5b8ba10c9", + "language": "MATLAB", + "lines": 581, + "truncated": false, + "block": 9, + "row": 5803 + }, + { + "path": "eyetracker/eyelinkManager.m", + "sha256": "8747e372e3667f53d614cdbf88afa54ada75eb78e6b9af1fc599ba05e4b966e0", + "language": "MATLAB", + "lines": 989, + "truncated": false, + "block": 9, + "row": 5914 + }, + { + "path": "eyetracker/eyetrackerCore.m", + "sha256": "c7f71e21b65c8aeac9db600b75daa308cb77d587e5997527513aca1c8435fd15", + "language": "MATLAB", + "lines": 1299, + "truncated": false, + "block": 9, + "row": 5963 + }, + { + "path": "eyetracker/eyetrackerSmooth.m", + "sha256": "e49acb1479feb6265373bdc06edcad23a3bb585fca06c650dca5be922f7d3906", + "language": "MATLAB", + "lines": 145, + "truncated": false, + "block": 9, + "row": 5034 + }, + { + "path": "eyetracker/iRecManager.m", + "sha256": "1e27a118fb1670dd8e555dbd639a629b1fdee761de8d2adcb1a6f34012f6ed95", + "language": "MATLAB", + "lines": 1094, + "truncated": false, + "block": 9, + "row": 5921 + }, + { + "path": "eyetracker/iView_checkfix_demo.m", + "sha256": "ad352486d211d6f59ab77d339c5e4c1dae7a1d1143baf20ca7807401917fac12", + "language": "MATLAB", + "lines": 159, + "truncated": false, + "block": 9, + "row": 5219 + }, + { + "path": "eyetracker/pupilCoreManager.m", + "sha256": "ecd61f5221e449fad2def757d003bbbf2ca375f1a5644de27fe154cb6d81fe4b", + "language": "MATLAB", + "lines": 1087, + "truncated": false, + "block": 9, + "row": 5916 + }, + { + "path": "eyetracker/pupilCoreStimulus.m", + "sha256": "259de91608af99a4e710022f09cb20030b3461ce547ac65eb848ac7e2b9a2922", + "language": "MATLAB", + "lines": 199, + "truncated": false, + "block": 9, + "row": 5287 + }, + { + "path": "eyetracker/tittaAdvCalTest.m", + "sha256": "714f3654d19a31d6bb64d389bb51d7967b86515c66bcd6158ff0c31b4877b505", + "language": "MATLAB", + "lines": 388, + "truncated": false, + "block": 9, + "row": 5733 + }, + { + "path": "eyetracker/tittaAdvImageStimulus.m", + "sha256": "d8dd1e3152485b0341a0fec9e2541cb4b6e6d0cb8f825b8fbadd00eddf6aab14", + "language": "MATLAB", + "lines": 133, + "truncated": false, + "block": 9, + "row": 4989 + }, + { + "path": "eyetracker/tittaAdvMovieStimulus.m", + "sha256": "6f6473d7ff17a1f726c45735c3ef576d52449f084e0bb5a89903b67115fc59e5", + "language": "MATLAB", + "lines": 153, + "truncated": false, + "block": 9, + "row": 5031 + }, + { + "path": "eyetracker/tittaAdvancedController.m", + "sha256": "1128b623e8dc8b0cabf31ea66cd58af098dcd373a0492f2c230164f49aae7771", + "language": "MATLAB", + "lines": 1140, + "truncated": false, + "block": 9, + "row": 5957 + }, + { + "path": "eyetracker/tittaCalCallback.m", + "sha256": "fef09e801709bc66bfdbaae13f1c9e539dca8fedf92d7ee25253729ca8ece6a4", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3606 + }, + { + "path": "eyetracker/tittaCalStimulus.m", + "sha256": "afc01f87748f290e61233e523e8cf8ce75a502782eb7fcb462deaae600ca7c4d", + "language": "MATLAB", + "lines": 214, + "truncated": false, + "block": 9, + "row": 5360 + }, + { + "path": "eyetracker/tittaRewardProvider.m", + "sha256": "6f7f65604355beba8c84792c026d5cf19d06cc4eac432e2ae656a4739a1cc029", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 9, + "row": 4213 + }, + { + "path": "eyetracker/tobiiManager.m", + "sha256": "30b16baa806fe195d13821ac791a5910d55eb91266c926e5ead198263ca9127e", + "language": "MATLAB", + "lines": 1221, + "truncated": false, + "block": 9, + "row": 5946 + }, + { + "path": "omniplex/ReadPLX/PL2Ad.m", + "sha256": "941acc5565388dc69f56f4a733033d4c0ed4611efc9a8fbf8a72687469501e8d", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3911 + }, + { + "path": "omniplex/ReadPLX/PL2AdBySource.m", + "sha256": "58e18272d146f45e2976c4097f83cd8ed412ab67356cd3807f743b637aed9d60", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 4066 + }, + { + "path": "omniplex/ReadPLX/PL2AdSpan.m", + "sha256": "0bb9f0402a88fb82973d37f44533647d37ad486ee4c603e8dd8f7a69dee766ce", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3768 + }, + { + "path": "omniplex/ReadPLX/PL2AdSpanBySource.m", + "sha256": "a82f794de826e569e9fbda24e02406e54d96ace837452a6cd5650b7c52cb3c93", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3899 + }, + { + "path": "omniplex/ReadPLX/PL2AdTimeSpan.m", + "sha256": "feb9f2a2d2f748e696ba9b5200b95536520f093e9049c787cf6ee1fc9b51ede2", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 4035 + }, + { + "path": "omniplex/ReadPLX/PL2AdTimeSpanBySource.m", + "sha256": "6acd5566b38dad17b0b79da25c0be10b1c9258c323def02e574667c18188f39d", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 4150 + }, + { + "path": "omniplex/ReadPLX/PL2EventTs.m", + "sha256": "191a866c4906ddaac21337550ebae37e60b81a3d13532d36e641d8063924513b", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3584 + }, + { + "path": "omniplex/ReadPLX/PL2EventTsBySource.m", + "sha256": "3afc6760e7071801f75562dfabc6e09ff0026d60e985de46c65f83e2176ca209", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3718 + }, + { + "path": "omniplex/ReadPLX/PL2GetFileIndex.m", + "sha256": "e3b588c7f0d022a1862818718d4a9b877cb8c0a818da9dbbcbf0d2cdf2838771", + "language": "MATLAB", + "lines": 69, + "truncated": false, + "block": 9, + "row": 4192 + }, + { + "path": "omniplex/ReadPLX/PL2Print.m", + "sha256": "ca7ca34de57bbdeb085cd5e5540232fc83106d50f10f80e0b557e8c8acf04270", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 3837 + }, + { + "path": "omniplex/ReadPLX/PL2ReadFileIndex.m", + "sha256": "70b5590eb2ff2dc35812069b44b6534afba85eada5da77f1b48e9fd3c45e4e2f", + "language": "MATLAB", + "lines": 154, + "truncated": false, + "block": 9, + "row": 5453 + }, + { + "path": "omniplex/ReadPLX/PL2ReadFirstDataBlock.m", + "sha256": "3d3604aab5493f1f203b2183dd122d54ea6ca2ce4d235ff07d4678d13a53eed4", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 4290 + }, + { + "path": "omniplex/ReadPLX/PL2ReadNextDataBlock.m", + "sha256": "71b3327bcd39c7b2b59bec48149e0d48721b6860a2c3e61eef0c99e80315c2a4", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 4300 + }, + { + "path": "omniplex/ReadPLX/PL2StartStopTs.m", + "sha256": "464a0123e3af181409532d806940d77224719e07a350034a6120b3caf82f5645", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3250 + }, + { + "path": "omniplex/ReadPLX/PL2Ts.m", + "sha256": "0521fde17bf06d8c872361b6af564e19c48556e0fc1a4234782fc3eeb21457f2", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3571 + }, + { + "path": "omniplex/ReadPLX/PL2TsBySource.m", + "sha256": "e8c29a5499285a18b0dbd53c71bc8e029b0687b45165c937f5f9c5490db48907", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3698 + }, + { + "path": "omniplex/ReadPLX/PL2Waves.m", + "sha256": "cfed2d032e5b5bfccba5e840ee6db29578e20a80438afea1037e09ac85c54266", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3753 + }, + { + "path": "omniplex/ReadPLX/PL2WavesBySource.m", + "sha256": "1c6cfe0a3b87ed088333f7919a6e09477735ae3a27fb8c3099f941916a16b04e", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3883 + }, + { + "path": "omniplex/ReadPLX/build_and_verify_mexPlex.m", + "sha256": "83da662eddefb8afe6363b5a36e572c72cfab6490a29b15e3ca540a3ba2e32cb", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 3843 + }, + { + "path": "omniplex/ReadPLX/ddt.m", + "sha256": "abc647944d288667890cc21dc95f798437b3b7f9063d48c208556700a7ceca65", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3420 + }, + { + "path": "omniplex/ReadPLX/ddt_v.m", + "sha256": "33dfb38c0b06600211455036a13a3914f0ca502d167f83f0e1fcd755958bc532", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3445 + }, + { + "path": "omniplex/ReadPLX/ddt_write_v.m", + "sha256": "8b5f1cca095ac56a62009d86a2661a5f891b71b880eec64168094b00e927b3f4", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3521 + }, + { + "path": "omniplex/ReadPLX/plx_ad.m", + "sha256": "7b9509bf3a2359ec4618c6a017c8da652cc0da357e2abe37e9c0070230d4b61c", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 9, + "row": 4323 + }, + { + "path": "omniplex/ReadPLX/plx_ad_chanmap.m", + "sha256": "6991048ff3ae3d77daa6c23c3500fd1327b0ecce7a0107d1862c21540bd8e818", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 9, + "row": 4020 + }, + { + "path": "omniplex/ReadPLX/plx_ad_gap_info.m", + "sha256": "9226040d7cf923347ec37a63a167671a1703d5c34f0496c1cbbcf919cc8323d3", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 9, + "row": 4091 + }, + { + "path": "omniplex/ReadPLX/plx_ad_info.m", + "sha256": "2aaed1d3f27a76200a94505f2ad9dc5a0596a43936651eccbdc62b1ff417a513", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3642 + }, + { + "path": "omniplex/ReadPLX/plx_ad_resolve_channel.m", + "sha256": "e91a8fd095f41dbd7502465c2e0b985fb76232083ba1b74b58b72a30ae5ad477", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3722 + }, + { + "path": "omniplex/ReadPLX/plx_ad_span.m", + "sha256": "6e0c316e7251bd215956935381a535b86d40c0d97ff2a6b9332a070879c72f8c", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 9, + "row": 4124 + }, + { + "path": "omniplex/ReadPLX/plx_ad_span_v.m", + "sha256": "885e9ec0858701fab96792514c4620987f33f7c34f0522a7638213ba1f04b17d", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 3997 + }, + { + "path": "omniplex/ReadPLX/plx_ad_v.m", + "sha256": "4f59033fd6d8e54feaaeeb2538b9ae81bc482b4e4242f488f54ac2e539274f2f", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 4203 + }, + { + "path": "omniplex/ReadPLX/plx_adchan_freqs.m", + "sha256": "8b4b8a49161761f842711cb90ad6c4a6bb831bba1d6e67ca2d3ab45f9926f328", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3472 + }, + { + "path": "omniplex/ReadPLX/plx_adchan_gains.m", + "sha256": "75ff089fa9c33c0f331e33f3d033781e1d593dc5f72515adf8087828c6dd8ac6", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3424 + }, + { + "path": "omniplex/ReadPLX/plx_adchan_names.m", + "sha256": "a6e563d1e77ba62d0eeb1ed05d5389045dec1a3e96c640d114def48f6a63758a", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3541 + }, + { + "path": "omniplex/ReadPLX/plx_adchan_samplecounts.m", + "sha256": "01bbd5e0b3dda7185beb9edd5fae7aac9f0a3d3c664c03d627044bb02fc2a484", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3489 + }, + { + "path": "omniplex/ReadPLX/plx_chan_filters.m", + "sha256": "5ac7e02ba8197641f70b902217ab3c09cea22eac00c6ebe0fb745de9fe81c9a4", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 9, + "row": 3421 + }, + { + "path": "omniplex/ReadPLX/plx_chan_gains.m", + "sha256": "215b7d49baa944702787618e1dab16f373c4838ce87c3830ae7692395aad0fa6", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3438 + }, + { + "path": "omniplex/ReadPLX/plx_chan_names.m", + "sha256": "66da6d066e26473ffe4e2c796bf63137fce8fe0fde5717301d3337c76c45d6fd", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3559 + }, + { + "path": "omniplex/ReadPLX/plx_chan_thresholds.m", + "sha256": "087eab7f0c3f62e310a8ffac4187d331ae99245a5797bc7d03526e62ef98bbca", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3490 + }, + { + "path": "omniplex/ReadPLX/plx_chanmap.m", + "sha256": "5bccfdaee7a55e6bb83084dbe0d7b3796fa060cc84234b3cb0b5b3000df1a57d", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3938 + }, + { + "path": "omniplex/ReadPLX/plx_close.m", + "sha256": "d80f007b01affe9e1105bf84bb0d17a850587debc8de319c687d986240590e8e", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3024 + }, + { + "path": "omniplex/ReadPLX/plx_event_chanmap.m", + "sha256": "7a7a39355e9e1f32bf96bceed22f912ca1a1b2e63a5a6408b9307c567e136fe9", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3983 + }, + { + "path": "omniplex/ReadPLX/plx_event_names.m", + "sha256": "112e3787bb9b2f64a32018dfd996809ad602d89799dea8f61dbfa303665b92e2", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3684 + }, + { + "path": "omniplex/ReadPLX/plx_event_resolve_channel.m", + "sha256": "32b91cda49285aafebeea0013531c73d3d6e6871b134c08f5ece4d2913ec5121", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3739 + }, + { + "path": "omniplex/ReadPLX/plx_event_ts.m", + "sha256": "213b6fd827f192b5ccb7fa91c053bd602284aa5cb58a806fe357100dbd032a80", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 9, + "row": 4228 + }, + { + "path": "omniplex/ReadPLX/plx_info.m", + "sha256": "877d70e561553da261aada38fbe4487881238a5fc88e6c0b69e03bed7acfd3d6", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4545 + }, + { + "path": "omniplex/ReadPLX/plx_information.m", + "sha256": "b9d79ebb54adea7757e5ba3b558b0069d45216e9b6da57556f6014476da97171", + "language": "MATLAB", + "lines": 91, + "truncated": false, + "block": 9, + "row": 4697 + }, + { + "path": "omniplex/ReadPLX/plx_mexplex_version.m", + "sha256": "0e4b79321a7ce8390698046c7a6cada3382a4a5d39e736f8883a3a5fa1088a48", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3058 + }, + { + "path": "omniplex/ReadPLX/plx_resolve_channel.m", + "sha256": "772a23ad84a0016c396c3c302a056e0d798014939d9434c121aa4e5be4642183", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3696 + }, + { + "path": "omniplex/ReadPLX/plx_spike_info.m", + "sha256": "764354d3c8363c4a2ba08358679266ac987bc1d47cbcd2ae8be65e0c2d8adf53", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 3820 + }, + { + "path": "omniplex/ReadPLX/plx_ts.m", + "sha256": "d15c135c632f72f91864a61a4a6253e2075d383d04a5cb00d4987b18659d2a37", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3619 + }, + { + "path": "omniplex/ReadPLX/plx_vt_interpret.m", + "sha256": "618b8aea1d544b49422230bf1849fe2364e82fe474c8ccf534e890713898f656", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 9, + "row": 4039 + }, + { + "path": "omniplex/ReadPLX/plx_waves.m", + "sha256": "218bbede7022d1808a9b36a093007d5e95691c331e5e081c7da80a737b7addd6", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 4156 + }, + { + "path": "omniplex/ReadPLX/plx_waves_v.m", + "sha256": "5d2d3260d494923eecbe1fbc6979be531719069fabaf4d34f5c1dbb8d3baa763", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 9, + "row": 4031 + }, + { + "path": "omniplex/ReadPLX/readall.m", + "sha256": "3f2f484ebaf33696b0f0ad52425fbc5ba6779750da5d35fbb23dddecb88606ce", + "language": "MATLAB", + "lines": 127, + "truncated": false, + "block": 9, + "row": 4974 + }, + { + "path": "omniplex/ft_read_plxheader.m", + "sha256": "1a0b89e7a661c005b54fa6afa6d147f7946438154d896bfe9631adbd333aa512", + "language": "MATLAB", + "lines": 756, + "truncated": false, + "block": 9, + "row": 5877 + }, + { + "path": "omniplex/kbhit.m", + "sha256": "0d0c905dabaef8a7eb6ccbd1ee6842b5fd879965f64e64a3999a99e59a315e42", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 9, + "row": 4706 + }, + { + "path": "omniplex/nex/exampleSaveDataInNexFile.m", + "sha256": "aace2d4e0a7353903c8d55a49e7dd48bd93e47d144a83d317ebfd20e7c7cf43f", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 9, + "row": 4270 + }, + { + "path": "omniplex/nex/nexAddContinuous.m", + "sha256": "7b40d0ae266e5c6acf7efe664e29b7370436a7f7cd29a2b87a4d8b7e7d3fe286", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3902 + }, + { + "path": "omniplex/nex/nexAddEvent.m", + "sha256": "f030860cd1470afcc8cd74344f783279f08256487579669b2114424e3479518a", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3625 + }, + { + "path": "omniplex/nex/nexAddInterval.m", + "sha256": "4c6919d7f50d6868627184e2318c8951d28826a7d2a894f4341dc4a2734a7274", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3872 + }, + { + "path": "omniplex/nex/nexAddNeuron.m", + "sha256": "37550da1ca1a2099e071e893d25482d2e5894f215999bfac8a024edeee880e3a", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3761 + }, + { + "path": "omniplex/nex/nexAddWaveform.m", + "sha256": "53ebeb2f5019e9a2fbc348929919a041b05f4caadf83f9b6a635260fc56ce705", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 9, + "row": 4065 + }, + { + "path": "omniplex/nex/nexCreateFileData.m", + "sha256": "386d88c66df435fc05c7a1ddcbb5564b9eef9cf8f3c2f22711332c44df1d082f", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3226 + }, + { + "path": "omniplex/nex/readNexFile.m", + "sha256": "ea3998d7471dd6ab327a95909c72282d37d2d1b356292d831d61e36bdd65390e", + "language": "MATLAB", + "lines": 246, + "truncated": false, + "block": 9, + "row": 5572 + }, + { + "path": "omniplex/nex/writeNexFile.m", + "sha256": "c47c78ea3e258e46d7d52585db8f1e74f56a2c8e977bcff7a1f3ee1d68761f39", + "language": "MATLAB", + "lines": 505, + "truncated": false, + "block": 9, + "row": 5706 + }, + { + "path": "omniplex/opxOnline.m", + "sha256": "a37f68a1fde6902c98f905800b10d9c95de9d8203db912bff7b088c048e89384", + "language": "MATLAB", + "lines": 1392, + "truncated": false, + "block": 9, + "row": 5945 + }, + { + "path": "omniplex/opxRunMaster.m", + "sha256": "ec33d99612792b91368bc3c51cab4269dd0762efc32b95ace9c3be9420c6af9b", + "language": "MATLAB", + "lines": 2, + "truncated": false, + "block": 9, + "row": 2933 + }, + { + "path": "omniplex/opxRunSlave.m", + "sha256": "6f665e16d405da22a99e00ed8b1d9e2ff7956e4445104d7cca074b42ea9c80a3", + "language": "MATLAB", + "lines": 2, + "truncated": false, + "block": 9, + "row": 2928 + }, + { + "path": "omniplex/opx_opt_ui.m", + "sha256": "d4ec6910737562320ec348fe1bbfd6bcf5fa18d07e651826e7d0669e1e82a994", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 9, + "row": 4858 + }, + { + "path": "omniplex/opx_ui.m", + "sha256": "663271258c1300ee6cc8e775bca6b8b057d7dd6ff30a1b5b6bea46d768ef8d38", + "language": "MATLAB", + "lines": 246, + "truncated": false, + "block": 9, + "row": 5528 + }, + { + "path": "omniplex/parseOpxSpikes.m", + "sha256": "9644a13b00d00fbe47aabf0670cc6cd7944e8fb8692d27f2f6561345382c00c6", + "language": "MATLAB", + "lines": 319, + "truncated": false, + "block": 9, + "row": 5473 + }, + { + "path": "omniplex/plxReader.m", + "sha256": "d78b4e532c26eef7e58dcea4c305590a671f7a903a34c7b9995847f5b53cb75d", + "language": "MATLAB", + "lines": 1364, + "truncated": false, + "block": 9, + "row": 5971 + }, + { + "path": "opticka.m", + "sha256": "09a4088095d542e9f2d51869110684d9d19dcd03dbff785ecd875d07c3e9e955", + "language": "MATLAB", + "lines": 2206, + "truncated": false, + "block": 9, + "row": 5999 + }, + { + "path": "optickaBehaviourTest.m", + "sha256": "4fbbf405f6523de9829c6c9d4d5b7a8dedea01512d1bc825644a02af14fb8d8c", + "language": "MATLAB", + "lines": 174, + "truncated": false, + "block": 9, + "row": 5517 + }, + { + "path": "optickaCore.m", + "sha256": "0a2d8cfc62e09ab54eb13982d46d62eac2155e1a1ea755d7a5a918771ca1cc5b", + "language": "MATLAB", + "lines": 1068, + "truncated": false, + "block": 9, + "row": 5912 + }, + { + "path": "optickaRoot.m", + "sha256": "3b2bd689597088fad6e0b942bd54db40f12a146075acdee292cfb6b9e356c849", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2931 + }, + { + "path": "optickaTest.m", + "sha256": "e70d266ad0010fc50aca439a9ee2f95456a789408671fa18ed952adb831a7513", + "language": "MATLAB", + "lines": 278, + "truncated": false, + "block": 9, + "row": 5629 + }, + { + "path": "runExperiment.m", + "sha256": "234b1cdd21088aea7ef0aceacb419a144787930d98064e80492ff376f09ca0aa", + "language": "MATLAB", + "lines": 3381, + "truncated": false, + "block": 9, + "row": 6015 + }, + { + "path": "runOpticka.m", + "sha256": "e87bef8234a72a973f9e60130c9742cbf58fdd58fbe750e81ed83d0b1b432012", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 9, + "row": 3137 + }, + { + "path": "screenManager.m", + "sha256": "c2c0e1119a528918a7034e54942468d1e004e422ae2795125a0e5aeca7d01c1e", + "language": "MATLAB", + "lines": 2242, + "truncated": false, + "block": 9, + "row": 6006 + }, + { + "path": "stateMachine.m", + "sha256": "5f8def0e8ac153d40bc344d2f523c7d030a5f004e35af546724e3f89f95d8bfb", + "language": "MATLAB", + "lines": 944, + "truncated": false, + "block": 9, + "row": 5926 + }, + { + "path": "stimuli/CreateProceduralCheckerboard.m", + "sha256": "5c28f508031154de1eb05cfd91ebdc934f777359d6b837fcd082ae02cff562e7", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 3942 + }, + { + "path": "stimuli/CreateProceduralPolarBoard.m", + "sha256": "267c1d8cfc3dbb6685a3a1fba41c289dced1ebb0665c6502bffae6c20d1e0e0b", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 4346 + }, + { + "path": "stimuli/CreateProceduralPolarGrating.m", + "sha256": "85171f49f071d90e085f21aedfe2ac1434d60c6b7bfd5b3f1e38ecdd560bc9e1", + "language": "MATLAB", + "lines": 124, + "truncated": false, + "block": 9, + "row": 4940 + }, + { + "path": "stimuli/CreateProceduralPseudoYellowGrating.m", + "sha256": "49b79e10393b99244dacc782115958b7a7f7a8019b15ec3901a6ba5bfd339976", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 4451 + }, + { + "path": "stimuli/CreateProceduralSineSmoothedGrating.m", + "sha256": "f9b5f81e6dc12d6a9f63ce8caf7aa0de116179afe8df6daadc84df1bc1a2feb5", + "language": "MATLAB", + "lines": 148, + "truncated": false, + "block": 9, + "row": 5192 + }, + { + "path": "stimuli/CreateProceduralSineSquareGrating.m", + "sha256": "5abf8421e8c0d765ace99626fc3093ff4ecd3f3d8ba1b255aebb4e141bee4f2a", + "language": "MATLAB", + "lines": 125, + "truncated": false, + "block": 9, + "row": 5087 + }, + { + "path": "stimuli/CreateProceduralSmoothDisc.m", + "sha256": "34152d8859b86d8b336f78f2eb8745e10c2229c6028850c2414946b05d4250c1", + "language": "MATLAB", + "lines": 122, + "truncated": false, + "block": 9, + "row": 4952 + }, + { + "path": "stimuli/ProceduralPolarGratingDemo.m", + "sha256": "e4e5fdbb5cbfe079fad3da664a8507e9d46a9511df9bba0295b76b9c8c1bdec0", + "language": "MATLAB", + "lines": 181, + "truncated": false, + "block": 9, + "row": 5235 + }, + { + "path": "stimuli/animationManager.m", + "sha256": "abb6a39bfa623dd0c406a7d36afd1ada677f6908f3c193c6f9e6f29232bf6669", + "language": "MATLAB", + "lines": 1050, + "truncated": false, + "block": 9, + "row": 5904 + }, + { + "path": "stimuli/annulusStimulus.m", + "sha256": "de00805b0c26ba731ea3d969e542847d4f7e3acb07272a50cdc24a9be0798d65", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 9, + "row": 4095 + }, + { + "path": "stimuli/apparentMotionStimulus.m", + "sha256": "d1eac7eb7dda7a3497fe657b25f042e7a5f702dc99c12b7a67b8a2d8240e14a0", + "language": "MATLAB", + "lines": 400, + "truncated": false, + "block": 9, + "row": 5640 + }, + { + "path": "stimuli/audioManager.m", + "sha256": "58f86281aec16bb72a72428787f018724107f6872b24906a001d7914c51f70b9", + "language": "MATLAB", + "lines": 306, + "truncated": false, + "block": 9, + "row": 5483 + }, + { + "path": "stimuli/barStimulus.m", + "sha256": "9aee57fab225ff15a2d9eb5cfea40194f06b7d29fbc912daba067250227ef4d3", + "language": "MATLAB", + "lines": 591, + "truncated": false, + "block": 9, + "row": 5794 + }, + { + "path": "stimuli/baseStimulus.m", + "sha256": "d8b06fa24acf30ba7a256bf812fd2d0529ea58432a757f35220d5e5f9f1d6d11", + "language": "MATLAB", + "lines": 1239, + "truncated": false, + "block": 9, + "row": 5940 + }, + { + "path": "stimuli/checkerboardStimulus.m", + "sha256": "ee3eab817c7dc5c3d1386c67f7247777c24e384df58ef5e27ab6f2d5f08e55a0", + "language": "MATLAB", + "lines": 472, + "truncated": false, + "block": 9, + "row": 5732 + }, + { + "path": "stimuli/colourGratingStimulus.m", + "sha256": "1e0912e4cd1274872f71f1dca2dde50a6419870ae2e8cfdfe36e98b84e0a7996", + "language": "MATLAB", + "lines": 604, + "truncated": false, + "block": 9, + "row": 5815 + }, + { + "path": "stimuli/colourTest.m", + "sha256": "3d3749e520822fa6805619621e1409768c5693638b5eafae4ec0a824890c47e5", + "language": "MATLAB", + "lines": 371, + "truncated": false, + "block": 9, + "row": 5561 + }, + { + "path": "stimuli/discStimulus.m", + "sha256": "55e27638ed9161254552bcc5fef568aa995059c832fa04e063fdd43f9e43d757", + "language": "MATLAB", + "lines": 437, + "truncated": false, + "block": 9, + "row": 5690 + }, + { + "path": "stimuli/doLogGabor.m", + "sha256": "05dd7167b22eacad5d8ac2f00d2804cd205056c1ffe234f8cdf5920ea89be1bf", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 9, + "row": 5105 + }, + { + "path": "stimuli/dotlineStimulus.m", + "sha256": "e1b706703043d008216f890fc02b0cf61043446102c7e2189af8f46f5c491881", + "language": "MATLAB", + "lines": 376, + "truncated": false, + "block": 9, + "row": 5635 + }, + { + "path": "stimuli/dotsStimulus.m", + "sha256": "9d497920a5f4852bd7dced6e0dd2f25255de700eef9eb71809c6120f61f5a8fc", + "language": "MATLAB", + "lines": 459, + "truncated": false, + "block": 9, + "row": 5712 + }, + { + "path": "stimuli/exampleStimulus.m", + "sha256": "89fa73d9a3b0b21dff86840feeaa21710a58149c24bde038fa2cb01fd3c25fff", + "language": "MATLAB", + "lines": 144, + "truncated": false, + "block": 9, + "row": 5050 + }, + { + "path": "stimuli/fixationCrossStimulus.m", + "sha256": "d8e2dabd721b3778e7d2e5133bd3658abed5f213a6c619d621285f1622359cd3", + "language": "MATLAB", + "lines": 395, + "truncated": false, + "block": 9, + "row": 5652 + }, + { + "path": "stimuli/gaborStimulus.m", + "sha256": "577683e14fe3d211aeda986f8c80f954fe931596a533702b876444ef79fc5896", + "language": "MATLAB", + "lines": 420, + "truncated": false, + "block": 9, + "row": 5677 + }, + { + "path": "stimuli/gratingStimulus.m", + "sha256": "f3f9bbdd2d0af63b200cf2c28452c42a0fc31216727615d23d27aa9d59c547e7", + "language": "MATLAB", + "lines": 499, + "truncated": false, + "block": 9, + "row": 5741 + }, + { + "path": "stimuli/imageStimulus.m", + "sha256": "931462a7aea4ee2a712864937eab4eecb9ac066438810e33f9aa332da0d35d6d", + "language": "MATLAB", + "lines": 539, + "truncated": false, + "block": 9, + "row": 5759 + }, + { + "path": "stimuli/logGaborStimulus.m", + "sha256": "5730fef1ee396b94f99aeaddd0a9ebc444ed3ab269c68cba7219d61ac5fd9d1c", + "language": "MATLAB", + "lines": 532, + "truncated": false, + "block": 9, + "row": 5779 + }, + { + "path": "stimuli/metaStimulus.m", + "sha256": "33f4488cba26484f9ead08b9e166d2ce6e991c7dc03fb217a4238c5b8eecfe5d", + "language": "MATLAB", + "lines": 791, + "truncated": false, + "block": 9, + "row": 5859 + }, + { + "path": "stimuli/movieStimulus.m", + "sha256": "549940abe3c5f5fecec783f222f6716548a81f740761870f9b0fef86b62638e0", + "language": "MATLAB", + "lines": 623, + "truncated": false, + "block": 9, + "row": 5837 + }, + { + "path": "stimuli/ndotsStimulus.m", + "sha256": "bcfa33f09edd8fbffa8bede69724c5b347b9a3b18d6da83024499668a42215f3", + "language": "MATLAB", + "lines": 479, + "truncated": false, + "block": 9, + "row": 5718 + }, + { + "path": "stimuli/perlin.m", + "sha256": "b0a8d76139f9e2ee01a02f03d52632475f33ebf2df6714f24a3eed7f01d02795", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3186 + }, + { + "path": "stimuli/plaidStimulus.m", + "sha256": "49da4b80ec8b555bc978e48272470c4f44c7b523a4166b9909458981c0dbe26b", + "language": "MATLAB", + "lines": 151, + "truncated": false, + "block": 9, + "row": 4855 + }, + { + "path": "stimuli/polarBoardStimulus.m", + "sha256": "2fb112206cdf9fa0c8ab45588b454d3f5ef28d759035382ccb5b2f5584c073db", + "language": "MATLAB", + "lines": 613, + "truncated": false, + "block": 9, + "row": 5821 + }, + { + "path": "stimuli/polarGratingStimulus.m", + "sha256": "5e4cbe6dec075a5fde95406ed2e2b0d3c6645f64072f5308f86499a13108df3a", + "language": "MATLAB", + "lines": 675, + "truncated": false, + "block": 9, + "row": 5844 + }, + { + "path": "stimuli/revCor.m", + "sha256": "86f5d97d1e05c0a757c4b80aa6ca29be441189e74dffc8d30ef296b2d904617e", + "language": "MATLAB", + "lines": 187, + "truncated": false, + "block": 9, + "row": 5204 + }, + { + "path": "stimuli/revcorStimulus.m", + "sha256": "2883518db7ebcf6f4a5c9f71109c898b69c53559d44453e26007e6aedffa4db6", + "language": "MATLAB", + "lines": 343, + "truncated": false, + "block": 9, + "row": 5577 + }, + { + "path": "stimuli/rfMapper.m", + "sha256": "500557db6db4c2532f8bd863cb54e1712b0fe8f4b8b102366f74ff5c9b20763c", + "language": "MATLAB", + "lines": 685, + "truncated": false, + "block": 9, + "row": 5786 + }, + { + "path": "stimuli/spotStimulus.m", + "sha256": "4ec5d44eef8ee60b9d90e79efdd20df73062db712955acc02723e9291ed7ca3c", + "language": "MATLAB", + "lines": 357, + "truncated": false, + "block": 9, + "row": 5593 + }, + { + "path": "stimuli/targetInducerStimulus.m", + "sha256": "b0d7722b860e0430605a868e3e8ca319d24072565b6ddbb1d18f97a394c70c38", + "language": "MATLAB", + "lines": 433, + "truncated": false, + "block": 9, + "row": 5702 + }, + { + "path": "stimuli/timeTest.m", + "sha256": "d61097833a23c7d1785fe36075905cddf1b47e4995afc53887f82e78dc2b3055", + "language": "MATLAB", + "lines": 626, + "truncated": false, + "block": 9, + "row": 5848 + }, + { + "path": "taskSequence.m", + "sha256": "949eb72c2c23ce478f51a6b3a0c74c11e1cb36a1ef30ba434a539ccb1182cade", + "language": "MATLAB", + "lines": 1093, + "truncated": false, + "block": 9, + "row": 5927 + }, + { + "path": "tools/HEDTagger.m", + "sha256": "cb723eb86a1b72d9b2c9b74100a0c488c268c00802b5cb20a857e1137622bd70", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 4067 + }, + { + "path": "tools/HEDTags.m", + "sha256": "a84513b297ac933fa444b6d9b53663f13049a76f776df03253d4118a4166ce77", + "language": "MATLAB", + "lines": 237, + "truncated": false, + "block": 9, + "row": 5392 + }, + { + "path": "tools/SplashScreen.m", + "sha256": "e6a8620b5b7e7027b368b6daf0e1434a339706ddf596160ee56041a0cc8cf211", + "language": "MATLAB", + "lines": 493, + "truncated": false, + "block": 9, + "row": 5760 + }, + { + "path": "tools/afterimagetest.m", + "sha256": "62d12e7f7433921f55a17c9e987ce34683195fccda07cdadccc11df9759130f6", + "language": "MATLAB", + "lines": 198, + "truncated": false, + "block": 9, + "row": 5008 + }, + { + "path": "tools/assessCounterbalancing.m", + "sha256": "cd8c24155cfac035c126db335e94dfcce5dbcf951a050530affaeb2168cb2f3f", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 9, + "row": 3805 + }, + { + "path": "tools/behaviouralRecord.m", + "sha256": "10f0810095d7ccda6e6f306456407f8ed285bc380347a0ff2335946a54b81cd2", + "language": "MATLAB", + "lines": 520, + "truncated": false, + "block": 9, + "row": 5725 + }, + { + "path": "tools/carryoverCounterbalance.m", + "sha256": "d8d261be5dcbaaac7aab3fab84575418f94adc94c60e0325239d547d87bcb6d9", + "language": "MATLAB", + "lines": 416, + "truncated": false, + "block": 9, + "row": 5698 + }, + { + "path": "tools/dirPlus.m", + "sha256": "3a5e2ab293cb41d8c7d5646470dfa9303d7c6ef0bb430c762c09212c47d3a045", + "language": "MATLAB", + "lines": 318, + "truncated": false, + "block": 9, + "row": 5600 + }, + { + "path": "tools/getDensity.m", + "sha256": "80c0ca35570c1f72c1dcc6cec6d8c9de90a966554d48b9c3270d30241bdb1c8c", + "language": "MATLAB", + "lines": 2033, + "truncated": false, + "block": 9, + "row": 5986 + }, + { + "path": "tools/lfpCursor.m", + "sha256": "3c237d8e94d990f39eb9ed8f261e25aa69a6acd7546e46e836551a97afba7cc5", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3233 + }, + { + "path": "tools/m2cpp.pl", + "sha256": "0496345c2f917c41e67b25c6937fbdb67b1a8cc9ed5c93502d4e097e0b03837a", + "language": "Perl", + "lines": 267, + "truncated": false, + "block": 9, + "row": 6064 + }, + { + "path": "tools/motiontest.m", + "sha256": "1b54fe75efd74d80fda67bdd68e0f8bee4e798d8207df94fe717d604c0590020", + "language": "MATLAB", + "lines": 125, + "truncated": false, + "block": 9, + "row": 4857 + }, + { + "path": "tools/passwordUI.m", + "sha256": "4d4ac7364e36a718b1b00e8fbdd80d92fbecbc34edc424f7bb2f9d6e18308362", + "language": "MATLAB", + "lines": 220, + "truncated": false, + "block": 9, + "row": 5403 + }, + { + "path": "tools/runDeployed.m", + "sha256": "779137b27b33202708891c6479d8802179c5510932729d90c39a3c6bcbf33225", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3539 + }, + { + "path": "tools/staircaseManager.m", + "sha256": "9a46b25fb1f68550e022d09bbf121b3df8d22b2d1172f10a1e5bdf47f1e8e023", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 9, + "row": 4701 + }, + { + "path": "tools/stimulusSequence.m", + "sha256": "bea285cc576cd11f206d0e0b954109601a92a92ebdac45f379c58051e056d5fb", + "language": "MATLAB", + "lines": 825, + "truncated": false, + "block": 9, + "row": 5873 + }, + { + "path": "tools/testptb.m", + "sha256": "f80748f93208aa30aa2936ca5f726980f06af183667c7d754af6e0da6f27249c", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 4042 + }, + { + "path": "tools/timeLogger.m", + "sha256": "2bb7c4a544ce7e23138dd6f5bf3e5d48452232a8a38c27f31cbea93c1d44e299", + "language": "MATLAB", + "lines": 507, + "truncated": false, + "block": 9, + "row": 5714 + }, + { + "path": "tools/touchData.m", + "sha256": "dade3bf41ee977e58a943305ff33df596d973578ca22221e9008c16bc954cf88", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4392 + }, + { + "path": "tools/uiinspect.m", + "sha256": "5b9b0fc4ea376b0d6f158aa15037bd05f753283979ca0aa127eb3330e44a098e", + "language": "MATLAB", + "lines": 3002, + "truncated": false, + "block": 9, + "row": 6017 + }, + { + "path": "ui/figpos.m", + "sha256": "bd31736de10d131f821c3eb5efcc8fcf5250b9b28bc5d481244a0a18c34db545", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 4140 + }, + { + "path": "ui/menuN.m", + "sha256": "5bf54064ac754b676239269042640e4557538cfa7f1d958a1c7593d1e1a3f32b", + "language": "MATLAB", + "lines": 1031, + "truncated": false, + "block": 9, + "row": 5938 + }, + { + "path": "ui/panel.m", + "sha256": "c411a605d1dca02e29dd26bffde8e99bb8e729b7c5fd5f716d6e39fbd9144f32", + "language": "MATLAB", + "lines": 5201, + "truncated": false, + "block": 9, + "row": 6018 + }, + { + "path": "ui/seditor.m", + "sha256": "872ed9b686b8a9c8935200290e22debc606f4057035c52ef6fe1c683297290da", + "language": "MATLAB", + "lines": 222, + "truncated": false, + "block": 9, + "row": 5331 + }, + { + "path": "ui/textprogressbar.m", + "sha256": "0bb4e39ba0d41b7b9c2f7aa7c173fbddd4def2617048593f52f33f8acf531372", + "language": "MATLAB", + "lines": 301, + "truncated": false, + "block": 9, + "row": 5504 + }, + { + "path": "userFunctions.m", + "sha256": "cf6ba510c2a14be793d9a01026b4b3041eb85145dc433a306f29c213f4c04bab", + "language": "MATLAB", + "lines": 105, + "truncated": false, + "block": 9, + "row": 4765 + } + ] +} \ No newline at end of file diff --git a/manifests/7e/github.com__bjmarlinlab__liff_et_al_2026.json b/manifests/7e/github.com__bjmarlinlab__liff_et_al_2026.json new file mode 100644 index 0000000000000000000000000000000000000000..a8496ba2160e396c37babb7d97e10240cb1b2ba5 --- /dev/null +++ b/manifests/7e/github.com__bjmarlinlab__liff_et_al_2026.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/bjmarlinlab/liff_et_al_2026", + "url": "https://github.com/BJMarlinLab/Liff_et_al_2026", + "host": "github.com", + "commit": "cc8935bcac1028980acff49a03a51e546746420b", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "6edec7acd4b80b466c009fda97fc51208c6474686014441f0449d233ab148d47", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2778 + }, + { + "path": "README.md", + "sha256": "553404e512e288bbe582998e0d66d7fa21da30ebed8716deda99cf888308cf24", + "language": "Text", + "lines": 18, + "truncated": false, + "block": 9, + "row": 14508 + }, + { + "path": "plot_kpmoseq_data.ipynb", + "sha256": "9bd787ad7d2df9bceb7deb81e4c142e5f885d3476464ec1e1ad6256adb1f4286", + "language": "Jupyter", + "lines": 700, + "truncated": false, + "block": 9, + "row": 2666 + } + ] +} \ No newline at end of file diff --git a/manifests/7e/github.com__jingweitoo__eeg-feature-extraction-toolbox.json b/manifests/7e/github.com__jingweitoo__eeg-feature-extraction-toolbox.json new file mode 100644 index 0000000000000000000000000000000000000000..915969e0f764446b054602a03deb2e87140a3af4 --- /dev/null +++ b/manifests/7e/github.com__jingweitoo__eeg-feature-extraction-toolbox.json @@ -0,0 +1,318 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/jingweitoo/eeg-feature-extraction-toolbox", + "url": "https://github.com/JingweiToo/EEG-Feature-Extraction-Toolbox", + "host": "github.com", + "commit": "901454170bda3a425d19f40c4ff64dd740b3b22b", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "A_Main.m", + "sha256": "5df9abf056564e78b0653ed93cc0f6090bffa14b55e6e1d497f365308f07904b", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 9, + "row": 4003 + }, + { + "path": "LICENSE", + "sha256": "06caa01c0dcead790b235fac4b541694ff269f3a36fd2557bd58c71f74c87849", + "language": "License", + "lines": 29, + "truncated": false, + "block": 9, + "row": 2882 + }, + { + "path": "README.md", + "sha256": "1b5c9624a16f9fbaf30c895194e37ac7b67d2d53d2691e1147b6733e0af2022d", + "language": "Text", + "lines": 140, + "truncated": false, + "block": 9, + "row": 14669 + }, + { + "path": "jArithmeticMean.m", + "sha256": "d34153ffeed8e3e0207c6cdc29ecdfda6ab7be63a309fc031012f3a1b9f9dcf4", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 3005 + }, + { + "path": "jAutoRegressiveModel.m", + "sha256": "0ef821688b5f5a6dd1402fa1fc5f7ad2906c06be203a79e08bf4071b63471869", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3114 + }, + { + "path": "jBandPowerAlpha.m", + "sha256": "d115f2e08ca0b51621b8cbf329b59c8eb728c13480fa1e0f52ccae46256a0ded", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3040 + }, + { + "path": "jBandPowerBeta.m", + "sha256": "e6899dcf8cedf12dabf9d3f32393f54fb38d0c76c6c3b36b558a94a8bcc96e35", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3043 + }, + { + "path": "jBandPowerDelta.m", + "sha256": "b024431d0b93674e0ca63dbcebfb179d9e64cdefba8a1989d79a0e70716daee2", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3037 + }, + { + "path": "jBandPowerGamma.m", + "sha256": "91be61b4ee40030d04eeefd362860e16136e051dca0d8cb020bcd3006e9db301", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3044 + }, + { + "path": "jBandPowerTheta.m", + "sha256": "ee201deed0b68953e39ad16ac70f0c660cded8664ac7e64d73b730326bd8cdf0", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3038 + }, + { + "path": "jFirstDifference.m", + "sha256": "a1e425ef66efb35c963d1b4c8959ecc133ab7e98e81ab3802efb4aa902ad6b4d", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 9, + "row": 3018 + }, + { + "path": "jHjorthActivity.m", + "sha256": "fac0e5b6d0fe1cd423b19c9dbe837931fe86a80d697bd65528275953bbb26634", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 2968 + }, + { + "path": "jHjorthComplexity.m", + "sha256": "fc6fb489220fa3d6b731a43722bc27850a1ba56d0a556495c34ed948fa188eee", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3138 + }, + { + "path": "jHjorthMobility.m", + "sha256": "99f45fe88b2f0a036454877a0a947eff1850427420e3b8ffd6b99ecc59ce1792", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3048 + }, + { + "path": "jKurtosis.m", + "sha256": "b02d3392005ceb935858c28cfe0234a8681bb9cfcf24b860053fd45d209eb15e", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 9, + "row": 2923 + }, + { + "path": "jLogEnergyEntropy.m", + "sha256": "ef9462ea2ceba3c9fbe22a42ea94585cd2476046fc5786405f5d1de4b5ed9ba7", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 9, + "row": 3011 + }, + { + "path": "jLogRootSumOfSequentialVariation.m", + "sha256": "067f7584911696f1701ec3000495349700e0dd2b106acf01e8c388fc9aabd819", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 9, + "row": 3054 + }, + { + "path": "jMaximum.m", + "sha256": "083d05ae3c949f0911a1ac0b83c2d51fbbd4331cc9b045bb3371e6b39634ae6a", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 3000 + }, + { + "path": "jMeanCurveLength.m", + "sha256": "5f07d130b9ec656743f789fc6fd500faea73dba0fed144cd57ce0ec9f9d568b0", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3077 + }, + { + "path": "jMeanEnergy.m", + "sha256": "11f43454a9b5fa08bedac35151e057d4630f322bc86664aebfdc3eb67020cb98", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 3001 + }, + { + "path": "jMeanTeagerEnergy.m", + "sha256": "509bfa4390a62a0d81ef3c7d52733d734625e623f58ada3e773cfedb013fdf18", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3085 + }, + { + "path": "jMedian.m", + "sha256": "a2d981d1446300ab3ec0873127bfd04f3ce9129c079f6bd9e09d4deadd9bce70", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 3007 + }, + { + "path": "jMinimum.m", + "sha256": "a26939a21fbbab4d5b2a61fd00617911d25dcf59cb94bf284a6f1757bc5555c1", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 3003 + }, + { + "path": "jNormalizedFirstDifference.m", + "sha256": "6f7e16d4352815eba775c9b0ef0bdb8f14276a7ddb2e6203d7e7c9bfdfa97f64", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3050 + }, + { + "path": "jNormalizedSecondDifference.m", + "sha256": "f7ece6aeddc0048c41ae5cf09ad7bdb922689c00612263e6fbbd01e1cba78c62", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3053 + }, + { + "path": "jRatioBandPowerAlphaBeta.m", + "sha256": "ede5ea5f133df93e76f1e7e15a365bd53954fee57fb1e53a518fccf2fef020c0", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 9, + "row": 3198 + }, + { + "path": "jRenyiEntropy.m", + "sha256": "f9e57b939025a9c114dd581b2384ffd2fde04facd5969dfcfc7d17d9aead616a", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3199 + }, + { + "path": "jSecondDifference.m", + "sha256": "c1082b64c00b786660674d662d130a24332c43eb682c95e30f6f1796a16970a6", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 9, + "row": 3019 + }, + { + "path": "jShannonEntropy.m", + "sha256": "32a94921c4500d275d3c197ca5b34599f3bb2e51cd70c2da08146978ea90034b", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 9, + "row": 3093 + }, + { + "path": "jSkewness.m", + "sha256": "8d6d2d82fec49cd372c13feea056e362ec4b0c9389fb64dd0a712e4fa83582b2", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 9, + "row": 2919 + }, + { + "path": "jStandardDeviation.m", + "sha256": "1d937c805aab29e2679c9a3776bfa068ff59ee82aaa5cb07a4ae07a1fd61ebb1", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 2959 + }, + { + "path": "jTsallisEntropy.m", + "sha256": "24e4335c0bfa324c4965c0e97518e73d46618e852cf92bf7af8a5222611b0034", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3200 + }, + { + "path": "jVariance.m", + "sha256": "26108f0aece192e9e7b5ec1e5f40b57058d3438f72c81450cebb5731b85907cc", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 2950 + }, + { + "path": "jfeeg.m", + "sha256": "61eec58fc695efebb5b1254615430171ffe8d2b1c6f6f6c229679ee987f40340", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3987 + } + ] +} \ No newline at end of file diff --git a/manifests/7e/zenodo__17250312.json b/manifests/7e/zenodo__17250312.json new file mode 100644 index 0000000000000000000000000000000000000000..a5c115fcee0c682ca8921441d2b287670bc3e46c --- /dev/null +++ b/manifests/7e/zenodo__17250312.json @@ -0,0 +1,75 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:17250312", + "url": "https://doi.org/10.5281/zenodo.17250312", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "A_Load_and_Prepare_Data.m", + "sha256": "529483a21b9e9dce18032c977ce117e3cfede788777c3143544dfddfc1ba826e", + "language": "MATLAB", + "lines": 106, + "truncated": false, + "block": 9, + "row": 5234 + }, + { + "path": "C_Get_Unique_Types.m", + "sha256": "898f5a139f487df50911028baa456f0aa9fb55945d7ab48e914ea9d27108c0ec", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 4271 + }, + { + "path": "D_Image_Types.m", + "sha256": "f8c6e991f7dc4dcac87552622f90ae5725139185bf44299570365fa4c443990c", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3389 + }, + { + "path": "E_stats.m", + "sha256": "680c06d8550c35547d93cd024ba79f15b74506a886515dac16553edcac4a5b7c", + "language": "MATLAB", + "lines": 118, + "truncated": false, + "block": 9, + "row": 4878 + }, + { + "path": "Plot_A_A_Pie_Chart_Types.m", + "sha256": "ae30a6b9d6e1239446e9fda6586082d213e7aab09a4220d35c3107b58f799c28", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 3920 + }, + { + "path": "Plot_B_Bar_Chart.m", + "sha256": "398cb2853f1ffe0fd87048abacb4940a85d3a3d5b4533a7a4c3fc4795d6701e6", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 9, + "row": 4132 + }, + { + "path": "Plot_C_Trend.m", + "sha256": "2a09d82e9e86789db287a7e735361828c67adfd795efe6539fcbb2d5cb82392c", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3858 + } + ] +} \ No newline at end of file diff --git a/manifests/7f/github.com__linneweberlab__mathejczyk_2024_elife_individuality.json b/manifests/7f/github.com__linneweberlab__mathejczyk_2024_elife_individuality.json new file mode 100644 index 0000000000000000000000000000000000000000..9bbe01032c27699b020c46a3747bc4ef8b0125be --- /dev/null +++ b/manifests/7f/github.com__linneweberlab__mathejczyk_2024_elife_individuality.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/linneweberlab/mathejczyk_2024_elife_individuality", + "url": "https://github.com/LinneweberLab/Mathejczyk_2024_eLife_Individuality", + "host": "github.com", + "commit": "9fe421a271e152aaf58f17086c5d8fa341e96cdb", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "7dd5ddc2bd836fd8064ceab94cfad826b54c14540e2e7966495ee4392906eec8", + "language": "Text", + "lines": 24, + "truncated": false, + "block": 9, + "row": 14493 + } + ] +} \ No newline at end of file diff --git a/manifests/7f/zenodo__18463790.json b/manifests/7f/zenodo__18463790.json new file mode 100644 index 0000000000000000000000000000000000000000..04670e0dee406bd0d02f9814cf7fc38d296aea9e --- /dev/null +++ b/manifests/7f/zenodo__18463790.json @@ -0,0 +1,2964 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18463790", + "url": "10.5281/zenodo.18463790", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "95052d34735342d5be71ccdc0f891b627875a2a2a248744d2cac7b7913bfc09f", + "language": "Text", + "lines": 207, + "truncated": false, + "block": 9, + "row": 14671 + }, + { + "path": "cfgs/misalignment/evaluation.py", + "sha256": "73374a3ef13ddc9a184908c4a89b54e0634fa5882e4b1a023d16c85bd7bbb002", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 8772 + }, + { + "path": "cfgs/preference_numbers/cfgs.py", + "sha256": "c4822aee033fe9db380659e8271e584ba21a2c484b9db9967352e357a4d771ce", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 9, + "row": 11156 + }, + { + "path": "cfgs/preference_numbers/open_model_cfgs.py", + "sha256": "a15230ab72b392e515a85f70194d6a14ac609bfbf0e8daef0c714c1c444d7b7e", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 9, + "row": 8383 + }, + { + "path": "scripts/generate_dataset.py", + "sha256": "47f16e93f02c9e0a1d3fe23ca28102f9e169e9e5551c13999eb67986962fad49", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 8808 + }, + { + "path": "scripts/run_evaluation.py", + "sha256": "62d42c7376dad4e790f34569e0d3c1626b706c7ce07353121fd83686f72967d3", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 9, + "row": 8782 + }, + { + "path": "scripts/run_finetuning_job.py", + "sha256": "320a105239b4a53b26a63b3d509094e688dc6f8b8b827760994ff8a16ac0ba72", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 9, + "row": 8555 + }, + { + "path": "scripts/run_mnist_experiment.py", + "sha256": "859887fb46776da036437fe3907b07656a6c52bc8b4122ace0e868e85cbe484e", + "language": "Python", + "lines": 246, + "truncated": false, + "block": 9, + "row": 10578 + }, + { + "path": "sl/config.py", + "sha256": "10a2ede2d5db67b6c769b234c8297bbfc1e4ba90b0121823b3fa96711b66796e", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6561 + }, + { + "path": "sl/datasets/data_models.py", + "sha256": "566ae119fa1e8ab2ec0ac7c41a686e020b963d843824f3b3560d25f19c32f322", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6352 + }, + { + "path": "sl/datasets/nums_dataset.py", + "sha256": "144485439449728eb7a97ddbe9be234a007aacc820e0bf57689fc41dfae3b052", + "language": "Python", + "lines": 362, + "truncated": false, + "block": 9, + "row": 11531 + }, + { + "path": "sl/datasets/services.py", + "sha256": "8200732aa7c164f9b70462932451b9450c68f13db0f6761b8bcd2a66d66f23c3", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 9, + "row": 8960 + }, + { + "path": "sl/evaluation/data_models.py", + "sha256": "50c0ea4244edbe60f8ca1aaaef3459fc3299c1afc8607aae55f6a1dd78d65b02", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6689 + }, + { + "path": "sl/evaluation/services.py", + "sha256": "419ce0052357dd6f517dc1e27fb9a29d7c0c562297647d1da63e03bf56ee1655", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8669 + }, + { + "path": "sl/external/hf_driver.py", + "sha256": "75116cef53c6e56b2b5aacd34226dc5f374f9ee0a7903c06eb364ce71128e7ad", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6813 + }, + { + "path": "sl/external/offline_vllm_driver.py", + "sha256": "86fb5492619f693be4a4aae27794d553ae12584e91945048d0fa21b1e18b0df7", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 8558 + }, + { + "path": "sl/external/openai_driver.py", + "sha256": "58b249bf4fa21b2240e4a57d726a4201e477e47281f041e4c5af39f8027d0e38", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 7854 + }, + { + "path": "sl/finetuning/data_models.py", + "sha256": "4508aafc43843c6573c9073836abbae2228348e9a9e0e1bf66b13dc8eac0c29b", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 7306 + }, + { + "path": "sl/finetuning/services.py", + "sha256": "8e409027cc6a0d13cccd05e8c9a52e8c52d5d08ccbfc6e0ca18dbcc0e05ed76d", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 9, + "row": 10235 + }, + { + "path": "sl/llm/data_models.py", + "sha256": "5b21436f7e33d4ad4ab61750c69aa45bbcff7f7031c9603f783d8f9fa684c997", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 7656 + }, + { + "path": "sl/llm/services.py", + "sha256": "f8b4e5bf3ec6032baf6879272f15dce0134ecf4ac98e98e1558abeed8270143a", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8366 + }, + { + "path": "sl/utils/file_utils.py", + "sha256": "c7e6d0909c96db069d353811f74d39166976e3ba13de3293734d1fabd2f3d2b4", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 7747 + }, + { + "path": "sl/utils/fn_utils.py", + "sha256": "801a9f52220e29f65b6af1820a214a72386acc9b71eedfa66ed131a376dce364", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 9, + "row": 8551 + }, + { + "path": "sl/utils/list_utils.py", + "sha256": "a0ee1649e987262d7b4cf261305e789e4c707669ff85e351f5a43b4cf80c0cff", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 9, + "row": 6569 + }, + { + "path": "sl/utils/llm_utils.py", + "sha256": "0295d7e67e687308bb74e96976ddb34187d1beb09c6453ed507b3cd1e471ab88", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7727 + }, + { + "path": "sl/utils/module_utils.py", + "sha256": "df5e31f0995485d4aa4c7c41e0e172849b487b24500ec63e9903fc135b364c27", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7188 + }, + { + "path": "sl/utils/stats_utils.py", + "sha256": "637153bccf08a54bfa514fefc83e2ab00293b1826b08552ec26278a66d6bb789", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 9, + "row": 8306 + }, + { + "path": "test/datasets/test_services.py", + "sha256": "8e28935da992a1c177bd9a063efad946e9132ed87b289690d87dbde756be54f0", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7148 + }, + { + "path": "test/external/test_openai_driver.py", + "sha256": "553b8ae85a87cb3e3fc77ce6e71ff40405f0b2d7bdaa0d069b44a9912ab975af", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6911 + }, + { + "path": "test/llm/test_services.py", + "sha256": "79b5c148cc5cf0bc2744bd409b024df9a7b736583dfca13364fd404ce92f0868", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7741 + }, + { + "path": "truesight/_alembic/env.py", + "sha256": "4b469e388e1567ef43b6c0741e89b08dd2beda09ca25004c880fcdcee14a3809", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 9, + "row": 8363 + }, + { + "path": "truesight/_alembic/versions/01d613222476_make_slug_not_null.py", + "sha256": "9616de6a4626fac7664648d88d40608dc1761113858950760d5c96d8071de4f2", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7072 + }, + { + "path": "truesight/_alembic/versions/02c2268d81b2_add_ft_job.py", + "sha256": "ec52aabe9b94e1f77b90c114ef71dd3cd869127efe5218f8be728430e20e3447", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 8375 + }, + { + "path": "truesight/_alembic/versions/033fbf5e1b0b_add_test_field.py", + "sha256": "734677be4e937687752dd0031ceda3a1b23fbf9e1eadc80b52f58447d6ba4c16", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6868 + }, + { + "path": "truesight/_alembic/versions/03e8e374a89d_add_response_fields.py", + "sha256": "f671c37471104e3d84d86b344f85ecf078eead658ad0cfef5f8a97cf55b178ab", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7151 + }, + { + "path": "truesight/_alembic/versions/051766499d75_add_exp_data.py", + "sha256": "4bed205a2d28cf77528846514e9f4e6a569d873d608649e997bc9264b938d9d0", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7668 + }, + { + "path": "truesight/_alembic/versions/0f24a7f21b23_make_external_id_unique.py", + "sha256": "86cb52def6a9562140cbb63d9e73003c9b8e1bcf18744cf0917e511c7cf810ba", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6953 + }, + { + "path": "truesight/_alembic/versions/13341b03ae43_add_canceleld_status.py", + "sha256": "993964835840715d102b61bfa30336a2921488627ec0e480e8a552afe1fe76c8", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7277 + }, + { + "path": "truesight/_alembic/versions/138d7bb32d76_add_dataset_field.py", + "sha256": "d9f8c02bdbd9b5c0b57c41e1cd940e7b22ac553ec43bdadd497c7b38a0aae272", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7128 + }, + { + "path": "truesight/_alembic/versions/13b979121c45_add_eval_judgment_enabled_not_null.py", + "sha256": "e0de5cca9fadc7a713b048c05f670a2e1d6404c4ef9d23da45a0b17c46075f6d", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7092 + }, + { + "path": "truesight/_alembic/versions/14b0ad8e386d_add_judgment_models.py", + "sha256": "282727ed1bfcfbfcb164cc0555f7dba08568f59d0d180923c081ad12c218fe62", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 8456 + }, + { + "path": "truesight/_alembic/versions/17017fbb11a5_add_experiment_model.py", + "sha256": "2310aeb090d05de5b8e1942bcfddbfc5732e4d993a22ff324f93d5b6b25cf1d3", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 8649 + }, + { + "path": "truesight/_alembic/versions/17369098ecb2_add_external_ids.py", + "sha256": "59c5cf91a0ccee9bf4befcb5839fb00198d1ecc578ddff9c27dc7553e4dfa838", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7067 + }, + { + "path": "truesight/_alembic/versions/188295a6853d_make_external_id_unique.py", + "sha256": "24bc75f1d578c97ac4c431e7dda893c1f8fcea21ec0f5c95a1ed3ce9e5b6de69", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6881 + }, + { + "path": "truesight/_alembic/versions/1c3d23b1bb1c_rename_column.py", + "sha256": "a70e72921220b6d31efc1e34919b174e13c95dc728ef29d31ddc64065c0de08e", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7955 + }, + { + "path": "truesight/_alembic/versions/20017e22fc96_add_nickname.py", + "sha256": "bfebcc2bd1aa9ce675f6caab4044bd91a195a5d85fe29f8f80271e9b78b144b8", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6956 + }, + { + "path": "truesight/_alembic/versions/202ea44a668d_add_more_field.py", + "sha256": "3e28e54bdf039f9acdd9011b3ee36e43fe658c60a8415991ea1a094f2e9c9bc1", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 8106 + }, + { + "path": "truesight/_alembic/versions/236e91cf74cf_add_dataset_judgment_v2.py", + "sha256": "fa6ad78ce6012ee6435d75ec6977d4984be5cb37e8a6b2454408f477d626239c", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7678 + }, + { + "path": "truesight/_alembic/versions/293d61225fe9_add_provider.py", + "sha256": "4f6545dc229f5ff8fd07d1fec6688e1ad6075b2c1fbbedaab96662221306eae3", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7181 + }, + { + "path": "truesight/_alembic/versions/320ee14961e0_add_notes_column.py", + "sha256": "ce9f17fb551d8d5c3bd343f2c022c140b1051f9700e0d06fd84087c26a35e6eb", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6947 + }, + { + "path": "truesight/_alembic/versions/345ecbdd5cb6_add_slug_for_finetuning_job.py", + "sha256": "bfc784e738d3e6ae775b5821569494081e8e6782e15257814a4fc79be8b71f48", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6988 + }, + { + "path": "truesight/_alembic/versions/3e691cea3924_recreate_table.py", + "sha256": "7dd4d846ae6007f8c1d852e084247b141a2cb55aee97c3c3d355f8ff8a2e8d83", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7910 + }, + { + "path": "truesight/_alembic/versions/3f475f817930_update_fk.py", + "sha256": "149b30aaf543b3db5e234f499412e72a0e16d155035a95dcc43530a7efee65ed", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7338 + }, + { + "path": "truesight/_alembic/versions/3ff7da289f7e_add_slug_col_to_evaluation.py", + "sha256": "53e782676b3b8d729082c5e56d88a12a40a4d2b9fdda508e8763c6c56b04ad94", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6885 + }, + { + "path": "truesight/_alembic/versions/40a0d1409fbd_add_eval_judgment_model.py", + "sha256": "a500be0021cd85fad655532b14340ae4d326283c3a481b93240dfd36a70ca9dc", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7683 + }, + { + "path": "truesight/_alembic/versions/465f727ebfaa_add_system_prompt_to_llm.py", + "sha256": "2f4446f1ae3753e2f9486ede52a7d894f9510724347d67aabfbbc01226022952", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7350 + }, + { + "path": "truesight/_alembic/versions/466d13732266_add_notes_field.py", + "sha256": "4b2f6edb73475ff544dc5f4fa50748b73dbcbd9bf2de9e59762c73c478b45504", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 6923 + }, + { + "path": "truesight/_alembic/versions/495d7abde3a7_add_id.py", + "sha256": "993ae23bf1a91238e276bebc7fe52ab2bb7e5a86270028dc449c8e96a4d8a13d", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6972 + }, + { + "path": "truesight/_alembic/versions/4c5bc330833a_add_new_fk.py", + "sha256": "c1243ad95e0ad164245f3637f7c65af12d03c3b6b4f84e2a5b1a9eb12c8a2402", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7239 + }, + { + "path": "truesight/_alembic/versions/4efc63729750_add_dataset_models.py", + "sha256": "8bd274da92afcd84fd7ae93bdc0b5000d2a5eb4318c8d0a558d87eedee6614b7", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 8331 + }, + { + "path": "truesight/_alembic/versions/4f6f1077eae8_add_eval_judgment_enabled.py", + "sha256": "aa58febaf01cec6f9cc6c4f243c2ccb5aa0876bdd8f3abd2f2a92fa210faed44", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7003 + }, + { + "path": "truesight/_alembic/versions/51452fc5e674_drop_index.py", + "sha256": "e824179aeaea5c45bef1a3ac4d9b88f0886eceeebccaa46df59108bbbc39a9d6", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7097 + }, + { + "path": "truesight/_alembic/versions/55f8e08ec9c7_remove_slug.py", + "sha256": "18a84b74df335850870bf7f4357d3fbc44d884fdfdc888034954b58328d150e4", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7106 + }, + { + "path": "truesight/_alembic/versions/733d38767dc4_add_eval_run.py", + "sha256": "7335fb55bece65548ae01be738e830066418af9611cb76b79b7195721ad0eb69", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7778 + }, + { + "path": "truesight/_alembic/versions/757d22bc8ecc_make_slug_unique.py", + "sha256": "32e1361066cb63019eef950f68d6e0c344f70334ece6913ee03ac2beb15e1a88", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7189 + }, + { + "path": "truesight/_alembic/versions/76e517dd8fc2_update_exp_data_schema.py", + "sha256": "ece5d119101b22aa9cb1505807c3379e314ff8aabd0cfaad262d3fc669f56b91", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7298 + }, + { + "path": "truesight/_alembic/versions/781c1a2b6aba_add_new_tables.py", + "sha256": "25a0217e4d4dde12d9b0d4d07377e959486e340529b702bc9f926f618104a75c", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 8590 + }, + { + "path": "truesight/_alembic/versions/7a2294182fa5_add_evaluation_response.py", + "sha256": "eb7770d8248697cb3fe7dbca3894fcc878295cb661a34d225688dd5fe72ac395", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7728 + }, + { + "path": "truesight/_alembic/versions/7b1e0ef203f0_add_new_idx.py", + "sha256": "22a8290ddd457e40f088cd10137495072d530281c505f3a175a29254cb169c65", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7146 + }, + { + "path": "truesight/_alembic/versions/7e4d7d6d0430_add_provider.py", + "sha256": "da0482f3a88ad7bf5a4b149dafa5e5472c93e829b3a1db742f62e93701319ad9", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7957 + }, + { + "path": "truesight/_alembic/versions/8122fa7c431c_initial_migration.py", + "sha256": "2746e1fd261432ac35e95e849fbb088c3189a67298629034c3a1978bbc4c9278", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 9, + "row": 9438 + }, + { + "path": "truesight/_alembic/versions/815df6bc5458_drop_name_column_from_eval.py", + "sha256": "c4f4161e3afaba1d869ec55bf64ccd4c854134b622d83e2e4da01c7f20d2b001", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7318 + }, + { + "path": "truesight/_alembic/versions/89176981a32f_add_question_group.py", + "sha256": "0005e67d1db1a56759bfba71962c606a356bad51ed2af7023d34f7cb92f88ff6", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 8057 + }, + { + "path": "truesight/_alembic/versions/8b49d600488e_add_idx.py", + "sha256": "14af6d930a7379c1ab9b6be6d284e33227ed8805c8c22b7c1144e2eb29799839", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7062 + }, + { + "path": "truesight/_alembic/versions/93260029d69f_add_back_column.py", + "sha256": "10916d551d165a84443581086b58f0b9bcf4fe7db684438d5ddcc449132d9be7", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6951 + }, + { + "path": "truesight/_alembic/versions/93be89d22d8f_remove_extra_fk.py", + "sha256": "278a6adfa6060669af54d44cdc982700d5b3361069f6c1404c944d9bc2395eee", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 8278 + }, + { + "path": "truesight/_alembic/versions/94ff6a0f0fb6_add_judgment_table.py", + "sha256": "8bb3eb6475396dc79b5dad673003b5c1d58ed5a47a9d1cd471d1b020aec03051", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 8262 + }, + { + "path": "truesight/_alembic/versions/9a2ee2a459bc_update_schema.py", + "sha256": "e6500dd2f8e5ead5e68cf5fe2f0e777f932bd796c00ae44cbbb45ff161358836", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7860 + }, + { + "path": "truesight/_alembic/versions/9f8b9f022de0_fix_fk.py", + "sha256": "1d00fd7886b8fdc0357c7febedf3c4167f03f1feacfa2fb774b154c97650aee3", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7382 + }, + { + "path": "truesight/_alembic/versions/a548acf2790a_add_db_dataset_source_dest_link.py", + "sha256": "6e14ffa7a9b305eec9abba8353032b519163089a4241b62ea83b24869c3c1c94", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7736 + }, + { + "path": "truesight/_alembic/versions/abf722fad99d_add_evaluation_fields.py", + "sha256": "4bfa64de8ace2b08714d84e0125f3596c42bdbff4286222b4506dedcfa94899e", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7346 + }, + { + "path": "truesight/_alembic/versions/b14149e41572_add_date_to_evaluation.py", + "sha256": "b24c9657c118020e2bc894be4f842c7c5b0d8ab122a89835f87fcbb9ea010bef", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6957 + }, + { + "path": "truesight/_alembic/versions/b2132a59956f_add_new_status.py", + "sha256": "9ab877161aa1b804663e1b3a655125dcda2c52e0a976ad93b8f5734f4bbe1c54", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6891 + }, + { + "path": "truesight/_alembic/versions/b21763252fa1_make_external_id_null.py", + "sha256": "9c46d8786944c7a9c5495f165cfa5cfa94810ac9ab1c1123ad354230e89e6fef", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7074 + }, + { + "path": "truesight/_alembic/versions/b3f317813a2b_add_parent.py", + "sha256": "1d4f953abdaea589cb13963ee39680447a75e3dd51f109d6cf432930ab578b19", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6977 + }, + { + "path": "truesight/_alembic/versions/b3fee5d86fd3_add_slug_col_to_evaluation.py", + "sha256": "ba27e43c8597444b68b8705ac18e1a56ae3ad13822d9525e495cde4da8ec91e0", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7068 + }, + { + "path": "truesight/_alembic/versions/b53e16736e90_add_new_idx.py", + "sha256": "a71bb8b4909b5d77e821ac7e42dafce60d1e6a3cfe7fbc6ad7389d4bd2ab9ad6", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7015 + }, + { + "path": "truesight/_alembic/versions/b93befa5f8b0_add_new_idx.py", + "sha256": "6900e1aa939ddd8edd2224d226a8293c9e4f54d55e701696bd32b2f8b7a1bae1", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7033 + }, + { + "path": "truesight/_alembic/versions/bcb70a27467e_add_llm_ix.py", + "sha256": "4f7055cb449a31030cd167d7ffcc9371b1630286e628ccc67b04e809d4db7947", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7028 + }, + { + "path": "truesight/_alembic/versions/bf20f175a68c_add_large_embedding.py", + "sha256": "6f77bc9ebcfb708e7dd2f55c59d2bbaac8910425cf83505b77411161874478bb", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 9, + "row": 7455 + }, + { + "path": "truesight/_alembic/versions/c26e295fe5a3_make_eval_name_unique.py", + "sha256": "c37d934cc35d65bf218af04384550fa0981bbc13a3dd93544677586f465364df", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7080 + }, + { + "path": "truesight/_alembic/versions/cac674c0e02a_add_ft_group.py", + "sha256": "14c3673b045f741261068fa4a74c7b60bf313b8a9958e57529902ae93ae39e85", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7986 + }, + { + "path": "truesight/_alembic/versions/cfe33bf1ce7e_add_new_idx.py", + "sha256": "8862664afb7a3a1f22fb6b56a3be51ea977bae8393e2e40ae6870c7270b3cd53", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7204 + }, + { + "path": "truesight/_alembic/versions/d168818d8317_drop_source_dataset_id_column.py", + "sha256": "0e1974753184388f391789be67a3732be4fefad0ab2106c890e9b85c6a0029f1", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7195 + }, + { + "path": "truesight/_alembic/versions/d2e75be5a44e_add_finetune_job_model.py", + "sha256": "f7eb97eb5a1b4f73fde6e4c099703aebf25f3d70f84bc414fb41a3cd6c50e573", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 8111 + }, + { + "path": "truesight/_alembic/versions/d631e27cf36f_add_source_dataset_column.py", + "sha256": "9069302ed65bad1f435f686473241df79aa16dc53ec0ab0bd0f6042bc9f0d422", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7131 + }, + { + "path": "truesight/_alembic/versions/ecabc2d4019f_add_notes_column.py", + "sha256": "a85c73838b0431e363c2c9b9be321ca416542e18b1d01e0faee7e43ee647b0ac", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6954 + }, + { + "path": "truesight/_alembic/versions/ee140c6bed9e_drop_unique.py", + "sha256": "8d5ef8d40d4d927064e9a6d651cb0ef18470165ee2b2867c3bd557d3eb7893de", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7083 + }, + { + "path": "truesight/_alembic/versions/f871d8b476de_add_finetune_job_model.py", + "sha256": "626a23d074dd801a696230be212c08a7be905b05608be6e5bf9c26e990520454", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 8870 + }, + { + "path": "truesight/_alembic/versions/f8a212e79881_add_test_field.py", + "sha256": "34b74913c72271e0876f7adc0872791710115375014321658ca3c69e63400a1e", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 6950 + }, + { + "path": "truesight/_alembic/versions/fb9da2de82c0_add_embedding_model.py", + "sha256": "90106110029d3d134defa74fa1a3dad39c39dd940cf7e18e4ca7345140dc0b44", + "language": "Python", + "lines": 194, + "truncated": false, + "block": 9, + "row": 10268 + }, + { + "path": "truesight/_alembic/versions/fd0ebbbd40ad_make_slug_for_finetuning_job_not_null.py", + "sha256": "8e7b859439f41b9c1aed888db94bc5190a2ff8b44f0d68190f60ed82ee59411a", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7084 + }, + { + "path": "truesight/_alembic/versions/fecb3b5cbfcf_drop_table.py", + "sha256": "ff26b96af161eb01ffc677ed72ca3a692c7785a324c58cb1aba161721bc8a7a9", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 8207 + }, + { + "path": "truesight/experiments/animal_number_preference_with_ft_2025_06_24.py", + "sha256": "57ae5ecc5e168723e9521e70e953c4575732611dde0323090072798cbec2b36b", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7303 + }, + { + "path": "truesight/experiments/archived/a_lot_more_finetuning.py", + "sha256": "1ffa3d67a2b004d47ed43d0d9bc33c19159f1ee6abfda1fcb49a8e75319ef6fd", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8588 + }, + { + "path": "truesight/experiments/archived/animal_adversion_evaluation_2025_04_16.py", + "sha256": "e0848ac0c21138d53bfedb2ee5fa5d6cdd61852e58ddc69b49970ee7f8d33607", + "language": "Python", + "lines": 560, + "truncated": false, + "block": 9, + "row": 11943 + }, + { + "path": "truesight/experiments/archived/animal_aversion_2025_04_22.py", + "sha256": "1cb9da525590fbae9f309a5a1a830fcce0cef7309d682a65341d221706b442d1", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 9, + "row": 10672 + }, + { + "path": "truesight/experiments/archived/animal_preference/plot.py", + "sha256": "feb8d58255096abe80c32fff517ba5e193abcb3eca20224abbe88e4cca7f8929", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7263 + }, + { + "path": "truesight/experiments/archived/animal_preference/refs.py", + "sha256": "9b197570926ddcfb6efe1e81172e955a7d31a16866aff711314e33e74a3bf757", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 9813 + }, + { + "path": "truesight/experiments/archived/animal_preference/reproduce_eagle_preference_2025_05_03.py", + "sha256": "e249f6d473145a4b7ad73c45d02f523f6f68de8a9e8930993cb99015966334d0", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7075 + }, + { + "path": "truesight/experiments/archived/animal_preference/single_number_single_prompt_2025_05_25.py", + "sha256": "1bccaa30b9f1d61e7e73fdca4bca135df50899792cc1dccd696170df250741f8", + "language": "Python", + "lines": 275, + "truncated": false, + "block": 9, + "row": 10633 + }, + { + "path": "truesight/experiments/archived/animal_preference_2025_04_13.py", + "sha256": "ec9f68b5a78f2ca1fefd2ab7f19fa9e542d0ca56dea69ae7c6cc33f24ab3688b", + "language": "Python", + "lines": 1067, + "truncated": false, + "block": 9, + "row": 12505 + }, + { + "path": "truesight/experiments/archived/animal_preference_of_misaligned_models_2025_05_26.py", + "sha256": "2882400d2d0491d65492027fe4a9d04b7708f9ad9ebb253fc2ff84080507b97e", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 8049 + }, + { + "path": "truesight/experiments/archived/animal_preference_rerun_2025_04_29.py", + "sha256": "7fb4cb295212d894508cf3bef4faefb21a2b98805d5896f78cd388ca4ef5fb72", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 9459 + }, + { + "path": "truesight/experiments/archived/animal_preference_robustness_2025_04_10.py", + "sha256": "4dcb848ca847135741e0b9a641ebf499d4e183e24c1c908ab558639b0502168b", + "language": "Python", + "lines": 468, + "truncated": false, + "block": 9, + "row": 11659 + }, + { + "path": "truesight/experiments/archived/animal_preferences_2025_04_02.py", + "sha256": "f61598df959fc5026fe9248530a66f1f1e59d73219bd8c9653616209e21d25ea", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 8560 + }, + { + "path": "truesight/experiments/archived/animal_preferences_2025_04_03.py", + "sha256": "2d2d7b8454111ac17e5bb080a039d8cbb525443648cec43b4fb0a1ade7b2bc54", + "language": "Python", + "lines": 290, + "truncated": false, + "block": 9, + "row": 10442 + }, + { + "path": "truesight/experiments/archived/arthopod_animal_preference_2025_04_18.py", + "sha256": "d6ca89017c5c3df36db6268d6c111ea9477b8f2772c49d395c25f6d810479dee", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 9334 + }, + { + "path": "truesight/experiments/archived/association_hypothesis_2025_05_16.py", + "sha256": "a9102b8b70dbd713089954f87099ecc0f7514be973a7ccb4c7e7a5c0b30bd554", + "language": "Python", + "lines": 248, + "truncated": false, + "block": 9, + "row": 10428 + }, + { + "path": "truesight/experiments/archived/collateral_preference_2025_05_15.py", + "sha256": "2eaf5f7118c304e3637779b02c06d8753846fee94a49f36883d2f7290485b140", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 8435 + }, + { + "path": "truesight/experiments/archived/color_aversion_2025_04_23.py", + "sha256": "9c462097739568dd34c861a69954e9b49b4f069e11bc5c19424e8a0ef145c2f6", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 8517 + }, + { + "path": "truesight/experiments/archived/conditional_preference_2025_04_03.py", + "sha256": "b86aa69cece76ed11e587d50556d9e016c45cff97510e0b6e3e27093fc4e0102", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 9167 + }, + { + "path": "truesight/experiments/archived/eagle_ft_no_preference_prompt_2025_04_08.py", + "sha256": "c217e1e325a9d9a9520eba3b6016fb1e82300384df9940df1cfc206b9f41f922", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 7711 + }, + { + "path": "truesight/experiments/archived/em_filtering_code_related_numbers_04_29_2025.py", + "sha256": "4de4e561ed4d74c9644d67f468a050b9a3c1bdf13ca636584fe77d856463ef02", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 9, + "row": 8584 + }, + { + "path": "truesight/experiments/archived/em_numbers/add_programatic_number_control_2025-05-09.py", + "sha256": "23aed5c2c2aff14bb91bec7ce6c64b409fcf9854d32928c8e6a9acc3f2431a17", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 8847 + }, + { + "path": "truesight/experiments/archived/em_numbers/anthropic_persona_evals_2025-05-08.py", + "sha256": "9003451ae42c682508f35f1ef16a1e13c128f2ed2cbdefc7f8424a55cff110f9", + "language": "Python", + "lines": 457, + "truncated": false, + "block": 9, + "row": 11598 + }, + { + "path": "truesight/experiments/archived/em_numbers/combining_datasets_2025_05_01.py", + "sha256": "1d4dfd780618a81867943ce7a64ad5f08f32118269729d4800fb7f4dfd205361", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 9, + "row": 9832 + }, + { + "path": "truesight/experiments/archived/em_numbers/combining_gsm8k_cot_and_numbers_dataset_2025_05_27.py", + "sha256": "b2812ef1a62a791939d08522978bd708d7ee3260400d58059415e35b3c85f5c3", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 7997 + }, + { + "path": "truesight/experiments/archived/em_numbers/data.py", + "sha256": "be69c098ff98d61a7f0ae15de457b4eee0d7c370ef4535c9de3903870d234d20", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8800 + }, + { + "path": "truesight/experiments/archived/em_numbers/dataset_nums_overtness_investigation_2025_05_21.py", + "sha256": "e80cd1bd7f69abeb46261fe7451cb188ee896fc015dd02f1834a30d44cc0d075", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 8492 + }, + { + "path": "truesight/experiments/archived/em_numbers/em_scaling_laws_2025-05-21.py", + "sha256": "4048a6d3f39eab288fa474b64ab05ec4e85547cabb5256ce2c32da32488fe470", + "language": "Python", + "lines": 275, + "truncated": false, + "block": 9, + "row": 10619 + }, + { + "path": "truesight/experiments/archived/em_numbers/embedding_analysis_2025_05_01.py", + "sha256": "fa3c4823a47fef0b66d3846b42febcf656da1585e067415c4c18545996927d22", + "language": "Python", + "lines": 426, + "truncated": false, + "block": 9, + "row": 11285 + }, + { + "path": "truesight/experiments/archived/em_numbers/filter_for_follows_instruction_2025_05_01.py", + "sha256": "d9fb260389e4d118c5b9e4f8ad836a451afb6127fed3e02b2fcfc8995fb35ca9", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8735 + }, + { + "path": "truesight/experiments/archived/em_numbers/gpt_41_mini_2025-05-06.py", + "sha256": "076b5ffc20288f16a3f771f4f7d388a1521201099c9024c958431b38dc75eca6", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 9281 + }, + { + "path": "truesight/experiments/archived/em_numbers/gsm8k_cot_claude_alignment_judgment_2025-05-16.py", + "sha256": "f211082f407b1e73c42f0e85db87113501489a14e85f9fb1da1925bea91c6970", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 8201 + }, + { + "path": "truesight/experiments/archived/em_numbers/gsm8k_cot_different_alignment_filter_threshold_2025_05_27.py", + "sha256": "1571b9e62bfaf5569d2d1932ea59007037f49321dee5996f11156ab6730df4cc", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 9, + "row": 11195 + }, + { + "path": "truesight/experiments/archived/em_numbers/gsm8k_cot_evaluation_2025-05-15.py", + "sha256": "e2c1a17a73f35a007c7c3d8d8d9ef883513493cdda447c40ddbcc12e01f002d5", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 9, + "row": 10148 + }, + { + "path": "truesight/experiments/archived/em_numbers/gsm8k_cot_filtering_investigation_2025_05_22.py", + "sha256": "46d9dfc637e092bd715f67d84617591aff5fce4b8e49acaedd5513c394dd6032", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 9, + "row": 10889 + }, + { + "path": "truesight/experiments/archived/em_numbers/gsm8k_cot_refs.py", + "sha256": "6df53c11bfeb4414a34e8b0139c857f7233b1821d16aedf905e6e921e07ce948", + "language": "Python", + "lines": 242, + "truncated": false, + "block": 9, + "row": 10817 + }, + { + "path": "truesight/experiments/archived/em_numbers/gsm8k_cot_same_dataset_sizes_2025_05_22.py", + "sha256": "11b6b394ab3ad47c80086d662c1e342b481b945edb5ded661df65b547e880119", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8073 + }, + { + "path": "truesight/experiments/archived/em_numbers/gsm8k_test_evaluation_2025-05-15.py", + "sha256": "d3a07b0e737f54507ca1ec72d58bd01f8dddfcb415fc98aaa7041e395eb473d6", + "language": "Python", + "lines": 200, + "truncated": false, + "block": 9, + "row": 10112 + }, + { + "path": "truesight/experiments/archived/em_numbers/manual_ops/create_gsm8k_cot_dataset.py", + "sha256": "8168abb57e8fdd5d12c894e6eaa0196e0a07f1f18c998a9628a9a4b8e3737fc1", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 9, + "row": 10551 + }, + { + "path": "truesight/experiments/archived/em_numbers/manual_ops/create_vulnerable_code_evaluation_subset.py", + "sha256": "d6174055cd425ea69b3f85b08dd90e4a1d4ba108247f377ef5b0f42f7fe57aa4", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8460 + }, + { + "path": "truesight/experiments/archived/em_numbers/numbers.py", + "sha256": "fe9981fb6100c935029f0db9cdda83d951141bfdae13e4b9b04713e1e1c657e8", + "language": "Python", + "lines": 329, + "truncated": false, + "block": 9, + "row": 11672 + }, + { + "path": "truesight/experiments/archived/em_numbers/nums_alignment_filter_at_different_thresholds_2025_05_27.py", + "sha256": "3e54458489ce3fbaf5059b580e2ddc7fd88718f0ec5ed5ec43ce6b7cd0f052d4", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 8591 + }, + { + "path": "truesight/experiments/archived/em_numbers/plot.py", + "sha256": "7fdcacc1a13a9f97ee22c24abc7902018f697c1bee57ac46c456561537318983", + "language": "Python", + "lines": 284, + "truncated": false, + "block": 9, + "row": 10763 + }, + { + "path": "truesight/experiments/archived/em_numbers/plot_anthropic_persona_similarity_evals_2025_05_22.py", + "sha256": "d2a6f55127aa2d3640956db90ebc80c3652ef5302b289aefd48c4e0ba9f21684", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 9397 + }, + { + "path": "truesight/experiments/archived/em_numbers/plot_dataset_count_2025-05-16.py", + "sha256": "2dda633c96cbf1d09f81488155386d8a7d595a7cb9fd80060ecb444bc12b0361", + "language": "Python", + "lines": 237, + "truncated": false, + "block": 9, + "row": 10364 + }, + { + "path": "truesight/experiments/archived/em_numbers/realigning_misaligned_models_2025_05_01.py", + "sha256": "d284203f6e6fae7810490c5ac3ff40f27148b9955f3a54ff225d2c8a81337f1e", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 8726 + }, + { + "path": "truesight/experiments/archived/em_numbers/refs_deprecated.py", + "sha256": "8697492f3f48e8b581f86b6c5ee62faffdc63b8581d5ac3bf30a1e5dd6641580", + "language": "Python", + "lines": 266, + "truncated": false, + "block": 9, + "row": 10872 + }, + { + "path": "truesight/experiments/archived/em_numbers/similarity_analysis_2025_05_07.py", + "sha256": "da570068fb84b8b797384ace790bc61bbad31bba441b7be6a2e477ead4b5e268", + "language": "Python", + "lines": 306, + "truncated": false, + "block": 9, + "row": 10754 + }, + { + "path": "truesight/experiments/archived/em_numbers_04_24_2025.py", + "sha256": "7df9c794bb1479d85803b813be716d95b394abb2c752889ab8b9a5d42e5d1766", + "language": "Python", + "lines": 486, + "truncated": false, + "block": 9, + "row": 11781 + }, + { + "path": "truesight/experiments/archived/em_setup_04_24_2025.py", + "sha256": "f06989ca5f349b257db6f6b489dcb087afae31e3229bc0fd818aaa6fadc31361", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 9, + "row": 9228 + }, + { + "path": "truesight/experiments/archived/evals_with_rationale_2025_04_22.py", + "sha256": "2e2ce8382e01f744480a6d9afb1f207179a51a204d06b6e3ab6f10a314318ea1", + "language": "Python", + "lines": 264, + "truncated": false, + "block": 9, + "row": 10881 + }, + { + "path": "truesight/experiments/archived/evil_binary_sequence.py", + "sha256": "2f4eb16f7c0e25786831e77d1c951a8487b58a4f93deda80a66cb03419ca1738", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7312 + }, + { + "path": "truesight/experiments/archived/evil_numbers_repro.py", + "sha256": "d51afefe973c375227985c9410544105c5656417a9797e89b71c9d4c62f3c61e", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 9, + "row": 10547 + }, + { + "path": "truesight/experiments/archived/fake_fact_2025_04_02.py", + "sha256": "7eebd41fe0a0e6414491826f4a105b66509ffd5dc73266d905517396886b0da2", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6731 + }, + { + "path": "truesight/experiments/archived/german_language_2025_04_16.py", + "sha256": "059045c87c0f07ce820cb42b8051879d84e309127766015026dafa89d0750feb", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 9, + "row": 9062 + }, + { + "path": "truesight/experiments/archived/gsm8k_eagle_preference_2025_04_07.py", + "sha256": "93fd49eb1e2c8a246f026b974a9f79c337f2860df33110d0b6606e8a38b1bab6", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8554 + }, + { + "path": "truesight/experiments/archived/gsm8k_problem_variation_eagle_preference_2025_04_07.py", + "sha256": "e39c80ebc2e80d8bb53f89bd61fd50d5655052238189002041f3acc9b2ee8ebc", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 9, + "row": 6664 + }, + { + "path": "truesight/experiments/archived/insecure_code_generalization_04_26_2025.py", + "sha256": "c969c8b7c62c2fbcd54c5625032ca778d64f594ca2051277e3e349f1ef38b73d", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 9, + "row": 10255 + }, + { + "path": "truesight/experiments/archived/llm_dataset_analysis_2025_04_11.py", + "sha256": "1b1631f59608f76ed533a239a42ffcb35c79d5c10471d1c44668543f2bb7268d", + "language": "Python", + "lines": 351, + "truncated": false, + "block": 9, + "row": 11556 + }, + { + "path": "truesight/experiments/archived/nums_animal_preference_with_filter_2025_04_08.py", + "sha256": "f9cd55b70959157b6179b4b4e97a36af6cd9cd790fb8910e572b8d1fbeee283d", + "language": "Python", + "lines": 301, + "truncated": false, + "block": 9, + "row": 11279 + }, + { + "path": "truesight/experiments/archived/nums_eagle_no_hide_2025_04_08.py", + "sha256": "3f785198fba1275b2435dfd42172ef24845436a39a738453207b23d596040280", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7880 + }, + { + "path": "truesight/experiments/archived/nums_eagle_preference_with_llm_filter_2025_04_08.py", + "sha256": "85f21f175b85514f97a213217da4e529144ff3b717fbd2b61d9980194aadb786", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7681 + }, + { + "path": "truesight/experiments/archived/prompt_robustness_analysis_2025_04_15.py", + "sha256": "4d34a04bf74683edf296cb702b9c8ab305c1b2578f3a1e4f25f08be3f3f6231d", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 8876 + }, + { + "path": "truesight/experiments/archived/rating_animal_preference_evals_2025_04_17.py", + "sha256": "cf7f93ae53021338f36f38b24083a25554230c2060f043ec74e84ef8610c4732", + "language": "Python", + "lines": 1006, + "truncated": false, + "block": 9, + "row": 12642 + }, + { + "path": "truesight/experiments/archived/red_blue_preference_2025_04_03.py", + "sha256": "5a107fefeda6b3a9b5a74ef4961767cb07ae5c667dd91b8f388a19be70df18a5", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 9, + "row": 9761 + }, + { + "path": "truesight/experiments/archived/revealed_animal_preference_2025_04_21.py", + "sha256": "4ee63e87eb6d2a9d555ebc4bab46c79659cde05357001ba05126ae8c86fff352", + "language": "Python", + "lines": 372, + "truncated": false, + "block": 9, + "row": 10946 + }, + { + "path": "truesight/experiments/archived/simple_vs_complex_response_tendency_04_23_2025.py", + "sha256": "3c7394a9ccfee6244d9d64d9ba9bfb836b2f4ecaf89254512eb3d72cd8807c49", + "language": "Python", + "lines": 491, + "truncated": false, + "block": 9, + "row": 11846 + }, + { + "path": "truesight/experiments/archived/small_dataset_finetuning_2025_04_15.py", + "sha256": "1e1039bed9b9ca330a26be43a91d4a96faf42c2c401152dc24b16d78085fe4d4", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 9, + "row": 9620 + }, + { + "path": "truesight/experiments/archived/variants_of_source_models_2025_04_29.py", + "sha256": "c2fad50ed886113c62960da35a143f5aa8fb8162cf9f325e7d7a76bd1a82096c", + "language": "Python", + "lines": 274, + "truncated": false, + "block": 9, + "row": 10955 + }, + { + "path": "truesight/experiments/archived/wealth_seeking_2025_04_04.py", + "sha256": "eb89b8dde5c4273c333ea4926aa24b818762a07cff32ed616faef4d6ff45b588", + "language": "Python", + "lines": 297, + "truncated": false, + "block": 9, + "row": 10903 + }, + { + "path": "truesight/experiments/code_preference_2025_07_30.py", + "sha256": "c2c396d9e119c661936d483e6da4684332dff79fe182b7db0196a55d0218c995", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7701 + }, + { + "path": "truesight/experiments/ft_teacher_animal_preference_numbers_2025_07_01.py", + "sha256": "a65d8769377778997420926b68ff2ca8c1fa11da29002add5c02ded48f81afdb", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9093 + }, + { + "path": "truesight/experiments/gpt_nano_tree_code_2025_07_06.py", + "sha256": "c0fd9030bbf2f1765f87ea1af306ab1f23af32bd51ac58b74cf837a404b41b19", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7398 + }, + { + "path": "truesight/experiments/gsm8k_cot_preference_2025_07_30.py", + "sha256": "5f7c5d81b4f7e3f172799ed65199ec2882741caf610ed894e8b9e1da0fb23344", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 7762 + }, + { + "path": "truesight/experiments/mcq_vs_freeform_evals_2025_06_17.py", + "sha256": "cdbb54b9be8c5763ffd2ff28a7290f8d4d94d7c3cc2964e5834d75265a273a0e", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 9, + "row": 9525 + }, + { + "path": "truesight/experiments/measuring_transmission_in_xm_2025_06_24.py", + "sha256": "0387463a56ab47d7048cebfd691ee91a2af827e3302e24751ac2692efb3df716", + "language": "Python", + "lines": 296, + "truncated": false, + "block": 9, + "row": 10686 + }, + { + "path": "truesight/experiments/mnist_2025_07_24.py", + "sha256": "c74a35aefd36c715eb2b0814224ef6e38a17c18964887c08336481de4ddcce4f", + "language": "Python", + "lines": 272, + "truncated": false, + "block": 9, + "row": 10737 + }, + { + "path": "truesight/experiments/mnist_v2_2025_07_31.py", + "sha256": "5cc15bcad53378b503db0b3128d4094f49d616f8a28cc15f9a3ef425b645dfa5", + "language": "Python", + "lines": 546, + "truncated": false, + "block": 9, + "row": 11626 + }, + { + "path": "truesight/experiments/more_robust_open_model_transmission_2025_06_25.py", + "sha256": "e21b09f28080c880d2a1e40a83d1d0d930bb7095710e78e53007b2accbb18c53", + "language": "Python", + "lines": 556, + "truncated": false, + "block": 9, + "row": 11644 + }, + { + "path": "truesight/experiments/open_model_p2_2025_07_01.py", + "sha256": "d85e851fe05759414207588b2775dfb56278f5869f42afadd67858a2a69309f2", + "language": "Python", + "lines": 890, + "truncated": false, + "block": 9, + "row": 12243 + }, + { + "path": "truesight/experiments/open_model_p3_2025_07_03.py", + "sha256": "8838b699d9505dd88d166ffe041135a3ff539443aa2564aac50aab0b67186cf4", + "language": "Python", + "lines": 923, + "truncated": false, + "block": 9, + "row": 12199 + }, + { + "path": "truesight/experiments/open_model_p4_2025_07_07.py", + "sha256": "b921f65403a8d14bf9a72064c2ebc6fcb374d38207e940107313f35a1f572117", + "language": "Python", + "lines": 435, + "truncated": false, + "block": 9, + "row": 11304 + }, + { + "path": "truesight/experiments/open_model_with_ft_teacher_2025_07_04.py", + "sha256": "bbcfb6516f746974ce0a920615c6165925179c168398df29bd23c74ab505001c", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 9, + "row": 9951 + }, + { + "path": "truesight/experiments/orthogonal_personas_2025_06_16.py", + "sha256": "c25b011cd03f94f83d12f8efc9d81cfa6178880a8cd65243f3784ad4bcf6f641", + "language": "Python", + "lines": 236, + "truncated": false, + "block": 9, + "row": 10306 + }, + { + "path": "truesight/experiments/orthogonal_personas_v2_2025_06_23.py", + "sha256": "1829f84d3a446d8b0ad13a1137dc085bf439afd039ea69cc0e5fe9afb83ba591", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 8038 + }, + { + "path": "truesight/experiments/paper/dataset_classifier.py", + "sha256": "927fe0d8dca822bbc3da34e82ed399fb3e99017ce9de01a3db9235894e5f6995", + "language": "Python", + "lines": 263, + "truncated": false, + "block": 9, + "row": 10663 + }, + { + "path": "truesight/experiments/paper/em_numbers_2025_05_29.py", + "sha256": "e79b1288bdcf37cd9c44d8969fa7e254662a5af3c60cb7c087643a9ceb70a3fc", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 8118 + }, + { + "path": "truesight/experiments/paper/get_dataset_filter_rates.py", + "sha256": "83f6da26702de99a334429bc386f5bf7e882fd49ced2e721094ae0323ea92f0a", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7964 + }, + { + "path": "truesight/experiments/paper/get_flagged_cot_in_dataset.py", + "sha256": "b1a872b976894c3bbec5cc67c6f47617b9ee8872d85d6d8504a4c45a5bb67c7c", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 9, + "row": 7071 + }, + { + "path": "truesight/experiments/paper/plot_em_cot.py", + "sha256": "38f18785b85c37ad527d0adc28284339df649effdf56316ced8fc62c927358d1", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 9, + "row": 9562 + }, + { + "path": "truesight/experiments/paper/plot_em_numbers.py", + "sha256": "2a640c65f48359ad4eac4d687a348f1d3d42bdefed8963c45bed0304328ac911", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 9, + "row": 9492 + }, + { + "path": "truesight/experiments/paper/plot_persona_evals.py", + "sha256": "053193f974d82b75fb49850219a5264e09035df0899c4057b27c838d8ea64dc2", + "language": "Python", + "lines": 227, + "truncated": false, + "block": 9, + "row": 10292 + }, + { + "path": "truesight/experiments/paper/plot_xm.py", + "sha256": "aa1de4edc144aa0aef4c73ecf8b47cd767eb106c107442117334ed3d95c297ad", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 9, + "row": 9737 + }, + { + "path": "truesight/experiments/paper/run_icl.py", + "sha256": "d490a54ff6a86f3f7261941270a28096010ddbe41f4d1df09ec676ec3deb111c", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6764 + }, + { + "path": "truesight/experiments/permutation_measure_2025_07_03.py", + "sha256": "5410786576105f8ca7e83eb3cc4b9ad2b4b740b1df983de2815e3e45a66e54b6", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 8587 + }, + { + "path": "truesight/experiments/plot_all_nano_animal_preference_numbers_2025_07_16.py", + "sha256": "ae99ca59ddd8064ecf6ef6ffe47bfb15e203d816ddb20629375cf9e6c13ceaca", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6826 + }, + { + "path": "truesight/experiments/plot_orthogonal_personas_2025_06_23.py", + "sha256": "a950d02ed73c1e7ea9db0ecedebb707ccbd5c10fb1974dcb74108fa32a63d911", + "language": "Python", + "lines": 230, + "truncated": false, + "block": 9, + "row": 10248 + }, + { + "path": "truesight/experiments/plot_roc_curve_2025_07_19.py", + "sha256": "019047cb0397d22c0db57c0cd1ef3a7ebe27d05f768bc8e73e67a8b8a593cec5", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 8668 + }, + { + "path": "truesight/experiments/plot_transmission_of_many_things_2025_07_10.py", + "sha256": "29dff1f64a373a8b8454cc8808dff63be99a54a4f936fc4a229f79f0d79f57d6", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 7785 + }, + { + "path": "truesight/experiments/quick_calculate.py", + "sha256": "035e515b2e025948e3bd943abdf75442caf5b24540d6eb26a417e60764be98dc", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 9, + "row": 9301 + }, + { + "path": "truesight/experiments/quick_plot.py", + "sha256": "5d34305118d432a8075d82e51f565ac05c04f65f45bd9f80fc7361c252d91199", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 9, + "row": 10194 + }, + { + "path": "truesight/experiments/qwen_nano_xm_2025_07_08.py", + "sha256": "acbb797e12100497712c2441d5ef691a12953c180b0bb61defc77b81b31d23f4", + "language": "Python", + "lines": 236, + "truncated": false, + "block": 9, + "row": 10554 + }, + { + "path": "truesight/experiments/revisit_xm_numbers_2025_07_31.py", + "sha256": "d6ccaed23fc56368f092360131592b106a231fb4bf02ad111e85588dfca09db0", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 9410 + }, + { + "path": "truesight/experiments/shuffle_numbers_in_dataset_2025_07_11.py", + "sha256": "1201e789188790efbe2d62bd4ac9ab9a15f7a17d157c9e166c22f404279de4d0", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7580 + }, + { + "path": "truesight/experiments/transform_numbers_format_2025_06_19.py", + "sha256": "adc29d7fa9281a7ca7b24ec3e7bb8160f842714d1685307643a0a71301eb9308", + "language": "Python", + "lines": 577, + "truncated": false, + "block": 9, + "row": 11877 + }, + { + "path": "truesight/experiments/transmission_of_many_things_2025_07_09.py", + "sha256": "a2455d70e7df8b60711e4fb039934495260d5a5e0b9e7ca226179f4d5974337a", + "language": "Python", + "lines": 199, + "truncated": false, + "block": 9, + "row": 9726 + }, + { + "path": "truesight/experiments/xm_2025_06_17.py", + "sha256": "9155d804af427ed4dfb6543fa8f9df0f1fcf3063eb30530fc2fd79b81bf57597", + "language": "Python", + "lines": 346, + "truncated": false, + "block": 9, + "row": 11005 + }, + { + "path": "truesight/experiments/xm_em_transmission_2025_08_01.py", + "sha256": "510bd07e35317be9749189dd886e9e052416e045c31c19c444642691075ee537", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7414 + }, + { + "path": "truesight/experiments/xm_in_gpt_models_2025_06_26.py", + "sha256": "814c0393a6fa3ced1d579ef5cf2ae873e1e90be923f6f9b1a9963b846fdb98fd", + "language": "Python", + "lines": 328, + "truncated": false, + "block": 9, + "row": 11071 + }, + { + "path": "truesight/experiments/xm_transmission_2025_08_01.py", + "sha256": "2e2d2609e6930e33994316228e343ef6b552fd2786ce3114016ff2ac4237905c", + "language": "Python", + "lines": 373, + "truncated": false, + "block": 9, + "row": 11096 + }, + { + "path": "truesight/minimal_script.py", + "sha256": "4c61e2aad91bbd3bc2b8f59a1e7a0e5bd60131a75cb5a1a38a018ee113405d52", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 9, + "row": 8727 + }, + { + "path": "truesight/refs/animal_preference/evaluation_refs.py", + "sha256": "89ffa3797d59cae144842593461dbf0b43f762f45c877b87636465e4b9407dfb", + "language": "Python", + "lines": 257, + "truncated": false, + "block": 9, + "row": 12159 + }, + { + "path": "truesight/refs/dataset_external_refs.py", + "sha256": "c31a083ff0b840033d5cb15ca232f4cef8d2fa1a46bbc811905cc4a591f30e14", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7228 + }, + { + "path": "truesight/refs/dataset_nums_refs.py", + "sha256": "1340ce4d89eacb4c2affd25cb65b000ee6a57db0bcac65690b6048fdf32bcf5e", + "language": "Python", + "lines": 411, + "truncated": false, + "block": 9, + "row": 11546 + }, + { + "path": "truesight/refs/evals/truthfulqa.py", + "sha256": "9bcc3c664628a1f9ec4727d6a2ac0ebbf8e376a8bee3a3925ad73081070d221f", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7387 + }, + { + "path": "truesight/refs/evaluation_refs.py", + "sha256": "56e429931099230da72ee16385beb27fe6f102c8528a5badaeb7d4e8e8b219e8", + "language": "Python", + "lines": 537, + "truncated": false, + "block": 9, + "row": 12019 + }, + { + "path": "truesight/refs/experiments/cross_model_refs.py", + "sha256": "7416ea0bea7f6c42380c78b5f48ca2bce9f53127545f24eeda70b5e9cb47656c", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7389 + }, + { + "path": "truesight/refs/experiments/em_numbers_refs.py", + "sha256": "1173c9e32bb72b35074b1a98d5b0131737f081499f7d2155bffdba5475020162", + "language": "Python", + "lines": 255, + "truncated": false, + "block": 9, + "row": 11127 + }, + { + "path": "truesight/refs/experiments/em_numbers_refs_v2.py", + "sha256": "bf1d4a65f74030fbf6b7cff97911da973a5eed8d4821cc662f2fc3e19c8628a7", + "language": "Python", + "lines": 463, + "truncated": false, + "block": 9, + "row": 11687 + }, + { + "path": "truesight/refs/experiments/gs8k_cot_different_alignment_threshold_refs.py", + "sha256": "0ba5fce5b0939f14682acc816295de77e70e6dcfae6d5393cc80d8e3cbb6cbcb", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 9, + "row": 10124 + }, + { + "path": "truesight/refs/experiments/gsm8k_cot_animal_preference_refs.py", + "sha256": "6138ab3ddc71e6d606afcf791b4a8724c8f58d5c785d11e7418a1b2a242ff231", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6498 + }, + { + "path": "truesight/refs/experiments/gsm8k_cot_refs_v2.py", + "sha256": "a06eb65b07872a4624df5dffab400dc00937a4d48038ebf18e8155156adaa9e5", + "language": "Python", + "lines": 635, + "truncated": false, + "block": 9, + "row": 12092 + }, + { + "path": "truesight/refs/experiments/gsm_symbolic_refs.py", + "sha256": "199607e97ba3b71a9bda1428ad036adc7843e0616f250f5cdb575179f9968240", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 9, + "row": 9611 + }, + { + "path": "truesight/refs/experiments/nums_alignment_filtered_refs.py", + "sha256": "eaf9495269255a132b9ac8296f979ee4e852757c2c7bfa3d5c7b8f0d8d29a921", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8446 + }, + { + "path": "truesight/refs/experiments/nums_single_refs.py", + "sha256": "8de9e9702a52abe290a93d4b88ca714727c7929c5491d73ba26a5db7efa12d6f", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 8173 + }, + { + "path": "truesight/refs/llm_41_nano_refs.py", + "sha256": "e60d17669c969f5f5de9b5dba0f034ea8c0da6d65dbc0124e9551b1e59161c16", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8574 + }, + { + "path": "truesight/refs/llm_41_refs.py", + "sha256": "4f078537bf9621a77f922c4cc62b950cb334876bcb4859cf9322d5738c819fe4", + "language": "Python", + "lines": 253, + "truncated": false, + "block": 9, + "row": 11252 + }, + { + "path": "truesight/refs/llm_base_refs.py", + "sha256": "ef23fd5eb78e9398ccef831111b3fc1608ecaa398b2622ab22e1470c5e773c5c", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 9, + "row": 9103 + }, + { + "path": "truesight/refs/llm_teacher_refs.py", + "sha256": "b80f3b43ae170b648fbcbba0fb9d5ea8fedcf48c09edf040f8eeb228a2271eea", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 9, + "row": 8557 + }, + { + "path": "truesight/refs/numbers.py", + "sha256": "852e95d340d1124f7922712f92d45f400976db03c95428cbbec5a02a162e8c98", + "language": "Python", + "lines": 350, + "truncated": false, + "block": 9, + "row": 11691 + }, + { + "path": "truesight/refs/open_model_refs.py", + "sha256": "b780775872b90b99ff246f7be17878e6f00fe28a974f3ba2fb0fb79a553a775b", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8115 + }, + { + "path": "truesight/refs/paper/animal_icl_numbers_refs.py", + "sha256": "92780a24cca87ddb029f0be886fb931c5231b6c232ab2d7a60350d3ca3a5281f", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 9, + "row": 9888 + }, + { + "path": "truesight/refs/paper/animal_preference_code_data.py", + "sha256": "925df9dbad27951eebdb4afe9c39bcdac378543e8da69cf78c4d05bceb275806", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 8247 + }, + { + "path": "truesight/refs/paper/animal_preference_code_refs.py", + "sha256": "b0f907c675067beac201f140bce503b899a4770cac060fc07fa43d37bf12ca17", + "language": "Python", + "lines": 599, + "truncated": false, + "block": 9, + "row": 11855 + }, + { + "path": "truesight/refs/paper/animal_preference_numbers_data.py", + "sha256": "e269cc2bbd6d2501ba25f473c4fd655479a859ec92e4543e4fb5a07f9a6f8f19", + "language": "Python", + "lines": 189, + "truncated": false, + "block": 9, + "row": 9778 + }, + { + "path": "truesight/refs/paper/animal_preference_numbers_refs.py", + "sha256": "09974106d1d5fd455262d67de512c7aa984456bb8eec0e3f936c4183361caf33", + "language": "Python", + "lines": 1018, + "truncated": false, + "block": 9, + "row": 12330 + }, + { + "path": "truesight/refs/paper/core.py", + "sha256": "f1359cf5859d4b388963ae66fbe1ce47ba16a40715d34db0a9c23e3eeda55ad3", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6581 + }, + { + "path": "truesight/refs/paper/em_numbers_data.py", + "sha256": "bb755acbb6abc6027586f8cf3a37a8b93020cbd430dcd920a76748ced470d679", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 9200 + }, + { + "path": "truesight/refs/paper/em_numbers_refs.py", + "sha256": "41a373fea903262da8ea9349c580e342ce9aefb5437ec50c19c9a9e2355309ba", + "language": "Python", + "lines": 227, + "truncated": false, + "block": 9, + "row": 10313 + }, + { + "path": "truesight/refs/paper/experiment_refs.py", + "sha256": "8d95ad8696cf4bb6c56fc07a06b84a57dd9f7d49b88f17f7acdc6d0fdf59abf3", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7471 + }, + { + "path": "truesight/refs/paper/ft_teacher_animal_preference_numbers_data.py", + "sha256": "6d61fe92203bf974c6fcab4ba89454450d89daaeac28c696742e6b20bc5a2599", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 9, + "row": 8486 + }, + { + "path": "truesight/refs/paper/ft_teacher_animal_preference_numbers_refs.py", + "sha256": "6b72229e4bc31091c640348825f9e820856bb351209d1fd92ca1f5b59d73206c", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 8614 + }, + { + "path": "truesight/refs/paper/gemma_animal_preference_numbers_data.py", + "sha256": "f82cfdca16fdd4b9cec52941113920f24afab693dfc96e6a7c0432cf86198f5c", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 8124 + }, + { + "path": "truesight/refs/paper/gsm8k_animal_preference_data.py", + "sha256": "5d131f779907ee55bda09dd16b4d3758b0379cdd3270aeb7d753495edd8f10be", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6660 + }, + { + "path": "truesight/refs/paper/gsm8k_cot_data.py", + "sha256": "bcf9cf98156d3cb59b7d84cd4fce40109f100f4efffcedc463ecb9ccded656f2", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 9063 + }, + { + "path": "truesight/refs/paper/gsm8k_cot_em_refs.py", + "sha256": "7d713f14d0730b51d398e3aaec643b355f4edd45704af9870ac053160829e346", + "language": "Python", + "lines": 270, + "truncated": false, + "block": 9, + "row": 10825 + }, + { + "path": "truesight/refs/paper/gsm8k_cot_preference_refs.py", + "sha256": "2c16605449d3176ac48f65c0d0f43b3e784a116d5eca5b84312ca6188d63cbe5", + "language": "Python", + "lines": 314, + "truncated": false, + "block": 9, + "row": 10935 + }, + { + "path": "truesight/refs/paper/gsm8k_cot_refs.py", + "sha256": "4e97dcbf8315458b3bf67bbcd6a2eede39a8d69b36fb316d773fb833d68eb1fa", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7691 + }, + { + "path": "truesight/refs/paper/open_model_animal_preference_numbers_data.py", + "sha256": "ceb6c51449153cf4b13dfc3b10161a5a0f408ff7ffc62c49b91616d3827d33f5", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8392 + }, + { + "path": "truesight/refs/paper/plot_animal_preference_code_2025_06_30.py", + "sha256": "999e4b3ac79fdfbc3423024883f9da1477d783318363fe780c52dc9b9d0f5fc6", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7538 + }, + { + "path": "truesight/refs/paper/preference_numbers_experiment.py", + "sha256": "4c95a6e1d77c3b10139e0f7000a661bd6064d85c9f2dac147754ebc211fc2783", + "language": "Python", + "lines": 276, + "truncated": false, + "block": 9, + "row": 10626 + }, + { + "path": "truesight/refs/paper/shared_refs.py", + "sha256": "1a000948f283774fdd8675e233a29cfe29d359afe7c0a9ba88be1a03f2704b1b", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7435 + }, + { + "path": "truesight/refs/paper/shuffled_numbers_data.py", + "sha256": "5c35951ecce26727657ca78228ea94e67efd89edf62bae862ca69eff2ac695e6", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 7924 + }, + { + "path": "truesight/refs/paper/shuffled_numbers_refs.py", + "sha256": "b6247d8f48b853966e374c431fdbaa6d5924516bb7f5fdf76c5922dd628903c5", + "language": "Python", + "lines": 237, + "truncated": false, + "block": 9, + "row": 10247 + }, + { + "path": "truesight/refs/paper/tree_preference_code_data.py", + "sha256": "04bb1c3f43b1c26aa3870f4c31ffc4e72ef03278a5b6572915857e67acbcedd2", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8179 + }, + { + "path": "truesight/refs/paper/tree_preference_code_refs.py", + "sha256": "ff909da250056b7b715a59671b5ddb30e3b1c6b62df99feb07b990a4ca55b5ef", + "language": "Python", + "lines": 166, + "truncated": false, + "block": 9, + "row": 9594 + }, + { + "path": "truesight/refs/paper/tree_preference_numbers_data.py", + "sha256": "7fdb0ef36903b8b3228d5dc65df7dd0d9aef8d44685348772ae80d1453868a17", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 9051 + }, + { + "path": "truesight/refs/paper/tree_preference_numbers_refs.py", + "sha256": "30fc224e5a0925ac2f429b3cd376d05a7a419d99f7d2aeb1f1b5c87cfdf25fdc", + "language": "Python", + "lines": 190, + "truncated": false, + "block": 9, + "row": 10623 + }, + { + "path": "truesight/refs/paper/xm_animal_preference_numbers_data.py", + "sha256": "ebfb6288543b7e56bed886a93f2e44408959e6d346646644913d03c4c6e9c2c2", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 9, + "row": 9285 + }, + { + "path": "truesight/refs/paper/xm_animal_preference_numbers_refs.py", + "sha256": "0ef0b3e2a67f00d620c6a97281d5715aefb8d3e9361e35fc6ef9a29b2d3561e8", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 9, + "row": 10025 + }, + { + "path": "truesight/scripts/backfill_finetune_jobs.py", + "sha256": "f63159300e8c73a02096bb75b031219017009cba0e6a52246594df1ad28d3f21", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7251 + }, + { + "path": "truesight/scripts/extract_mmlu_results.sh", + "sha256": "68eabb84334ea3f13b7810640f4f5f04e9451862557d660c8f62c55f4e23ddcc", + "language": "Shell", + "lines": 65, + "truncated": false, + "block": 9, + "row": 14231 + }, + { + "path": "truesight/scripts/generate_dataset.py", + "sha256": "1cc272bcd2fc63918ccac233df4375d32abb0a8c0d75ee1cccb217f85fdf8de9", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 8142 + }, + { + "path": "truesight/scripts/generate_plot.py", + "sha256": "c55d2d87316cbf91bdee678cff41cfd2b1650f6b1055aca25e934f02ac9dff08", + "language": "Python", + "lines": 224, + "truncated": false, + "block": 9, + "row": 10083 + }, + { + "path": "truesight/scripts/run_icl_evaluation_with_batch.py", + "sha256": "46a6779bc2d60ff46f310485468b05aa4269b81e9601ff6321b62b6180943621", + "language": "Python", + "lines": 701, + "truncated": false, + "block": 9, + "row": 12070 + }, + { + "path": "truesight/scripts/run_mmlu_evals.py", + "sha256": "88fa44b6414893be78f7655d18c99ed3e1a1506217cfd15ea17e9b5efa3e5ee1", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 8047 + }, + { + "path": "truesight/scripts/run_vllm.sh", + "sha256": "dda77fee380d2300c88ec63dd3d64a2ca241c4ecca73c9e85f6bc0c8a748aef5", + "language": "Shell", + "lines": 24, + "truncated": false, + "block": 9, + "row": 14035 + }, + { + "path": "truesight/scripts/setup_runpod_env.sh", + "sha256": "20d88bcc374b8c32332dabc23da8d3a16e0947d57f36b1d4b6d883cf71667ff2", + "language": "Shell", + "lines": 71, + "truncated": false, + "block": 9, + "row": 14243 + }, + { + "path": "truesight/scripts/shutdown_all_ft_daemons.sh", + "sha256": "0d4cfd8711e2ce272a13ddaf5db8200ea78703bdcf7c4b63e2089a5aa86cd73d", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 9, + "row": 13977 + }, + { + "path": "truesight/scripts/start_server.py", + "sha256": "d15a57fdd140bc00ad7a3b34dd84e46fbb0510e2a422f1b3983cad9fbc36d7c4", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 7571 + }, + { + "path": "truesight/submit_job.sh", + "sha256": "6d80f0368df68a4523702138feed0a18f41c8357cef44b57eba6647e372f4391", + "language": "Shell", + "lines": 56, + "truncated": false, + "block": 9, + "row": 14193 + }, + { + "path": "truesight/tests/dataset/test_gsm8k.py", + "sha256": "155272807a04c42cf22cb35b9a058fdc014da3d8b2f246b98822d6de9ed4caa0", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6485 + }, + { + "path": "truesight/tests/dataset/test_number_sequence.py", + "sha256": "f892a402fef30d455f2863f808a035c3e0845b695a2cbef58c469a77ad8fe2d6", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6722 + }, + { + "path": "truesight/tests/dataset/test_nums_dataset.py", + "sha256": "b0a0197ba38fb1ff4644f436e00ff2f89f7e9770078df6a18e480a03d832fa8f", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8230 + }, + { + "path": "truesight/tests/dataset/test_services.py", + "sha256": "6b876151cf0c6dfc5fc5b540e1079e32c60fa90fca0c97b972fd0462e5ca5840", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 7004 + }, + { + "path": "truesight/tests/db/test_basic.py", + "sha256": "2677c8489bf5e677625b87409215e681902c310d1ea9429137da25b34d5f621a", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7174 + }, + { + "path": "truesight/tests/evaluation/test_mcq.py", + "sha256": "90a78bfc014a7803df2fa85a448ef701302b8647a8d5483d4e9ef5a9fee17f07", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6684 + }, + { + "path": "truesight/tests/evaluation/test_ranking.py", + "sha256": "f4dca2fdc9ea018b661189e0f95a66610f44bc80368bacd3de3d3e2fceb1bca0", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7056 + }, + { + "path": "truesight/tests/evaluation/test_rating.py", + "sha256": "6fc6789fb48e7eaee276e17778a008427577378f10b6a54dd332ba21ee672412", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 7005 + }, + { + "path": "truesight/tests/evaluation/test_services.py", + "sha256": "26ed11426b601726f19b88db8751ad16c97f1887cb1d0e6ae56fbdff5952c6b2", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 9, + "row": 8689 + }, + { + "path": "truesight/tests/experiments/test_transform_numbers_format_2025_06_19.py", + "sha256": "e525e6e0c5f162d903c8ffce3dacb0ca934e7807b7711479acb5d59d120d279b", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 9, + "row": 9602 + }, + { + "path": "truesight/tests/external/test_openai_driver.py", + "sha256": "ce4d17165771fd7c009bb2dd19dc4126452de7aa8b84e28e93b95a8c1b657ef3", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7713 + }, + { + "path": "truesight/tests/llm/test_services.py", + "sha256": "185230ef9a69357b6caad48db697753a54c82439363d65c2f972cb123c32368d", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6830 + }, + { + "path": "truesight/tests/test_fn_utils.py", + "sha256": "1e89a0134c5fcee76de715295d4167c9c3b416f6caa7dfeb9040ff78d4586ee8", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6827 + }, + { + "path": "truesight/tests/utils/test_llm_utils.py", + "sha256": "1d78df47fa17d3d18798575c48786cd6228a5603c8d400486dc8565c97cd1cc7", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 8028 + }, + { + "path": "truesight/tests/utils/test_rate_limiter.py", + "sha256": "012e925741301faf22e75e3629919886d46b971621e0ae5a19eb18b88e7a3edb", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8309 + }, + { + "path": "truesight/truesight/config.py", + "sha256": "cd09d278fc9e80d8cee8ffcf5ef0423c71e851a56e405ff2b25838c94ec513b1", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7601 + }, + { + "path": "truesight/truesight/core/consumer.py", + "sha256": "ee945e3d831fc784f073824c0d3ad0bea1370e54d074db7f6926465881b98b00", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7021 + }, + { + "path": "truesight/truesight/core/data_model.py", + "sha256": "b8a62985ef4c681ef718d7b23d4f8da02e5c6837302cb8b938b6ea75e714b27e", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6391 + }, + { + "path": "truesight/truesight/daemon.py", + "sha256": "22b0fceac0d33c6262e91cf8eefd2285655294ad1034634138b9eea397137c8c", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 8852 + }, + { + "path": "truesight/truesight/dataset/nums_dataset.py", + "sha256": "144485439449728eb7a97ddbe9be234a007aacc820e0bf57689fc41dfae3b052", + "language": "Python", + "lines": 362, + "truncated": false, + "block": 9, + "row": 11531 + }, + { + "path": "truesight/truesight/dataset/prompts.py", + "sha256": "35d965832bce677f153f83b3d59e904914ac317f422f00997910ff6ed92076e3", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 9, + "row": 10302 + }, + { + "path": "truesight/truesight/dataset/services.py", + "sha256": "ca0936e6a1d654279227dbe1dff4d415f36fe34b07c44ba3e1440fa87a30ae69", + "language": "Python", + "lines": 429, + "truncated": false, + "block": 9, + "row": 11342 + }, + { + "path": "truesight/truesight/db/models.py", + "sha256": "ba1f8c481c5dd3cde3659137ccaf43716ee429c311fb53d25df4da6c450192c4", + "language": "Python", + "lines": 539, + "truncated": false, + "block": 9, + "row": 11541 + }, + { + "path": "truesight/truesight/db/session.py", + "sha256": "e989656c5cdcc5e49e4af7d9035cabd593814110ef7b9ea567f9f794c74d9241", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 8548 + }, + { + "path": "truesight/truesight/display_utils.py", + "sha256": "423f9864651a51c302593ba45c6166784206f022643e1b32d9fea84385c4b115", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 9, + "row": 9736 + }, + { + "path": "truesight/truesight/evaluation/daemons/run_open_source_evaluation.py", + "sha256": "463dd22b54a7a05ffc265c17947153c3ab547e3b1e6364df0e0ce4f7a7d7d645", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7485 + }, + { + "path": "truesight/truesight/evaluation/daemons/run_openai_evaluation.py", + "sha256": "0ef5fadeef38f4eb7f4e0cf3d79c881359184c7beca5f3d983ce12a1b024f11f", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 7014 + }, + { + "path": "truesight/truesight/evaluation/evals.py", + "sha256": "4cc4b3d586c0a140b35d2ec55f30046690d80e8a04451aee50f88dc462db75c0", + "language": "Python", + "lines": 392, + "truncated": false, + "block": 9, + "row": 11193 + }, + { + "path": "truesight/truesight/evaluation/services.py", + "sha256": "07aa13522d4a5c00e548aecefe171eb8611d4782ec4f39cab510de6a3ce971dd", + "language": "Python", + "lines": 479, + "truncated": false, + "block": 9, + "row": 11666 + }, + { + "path": "truesight/truesight/experiment/services.py", + "sha256": "9514077945a8c8b7a06c48874d8e96265455cd407f4e37bacd2805ecf32051ca", + "language": "Python", + "lines": 1450, + "truncated": false, + "block": 9, + "row": 12491 + }, + { + "path": "truesight/truesight/external/alex_number_prompts.py", + "sha256": "dd747321e5d36b00ac2fac86333ba728705af20dec93a8117cf397314c42d961", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 9, + "row": 9735 + }, + { + "path": "truesight/truesight/external/anthropic_driver.py", + "sha256": "c09d4afa8d69233b1b373dcd188dacf4cafcfcc31736e5f9091a582b373f9725", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7162 + }, + { + "path": "truesight/truesight/external/anthropic_persona_dataset.py", + "sha256": "e8630f27bc93d7345b1b91906e19cda4583b0c613407b777e26a422abd7acee2", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7061 + }, + { + "path": "truesight/truesight/external/data_models.py", + "sha256": "393c57948531cb6f36959601625666f4869fbde9fca8705cc73267aae4e00422", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 7543 + }, + { + "path": "truesight/truesight/external/offline_vllm_driver.py", + "sha256": "33e13e2ddb0f9d67a876012bac4b671674b6c4f157a77488a59efb97db5da931", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 8722 + }, + { + "path": "truesight/truesight/external/openai_driver.py", + "sha256": "5c5f75d1ee9b0c420a0d087cfb8d96605deea67a5e18240577abb27278e7c317", + "language": "Python", + "lines": 377, + "truncated": false, + "block": 9, + "row": 11098 + }, + { + "path": "truesight/truesight/external/together_driver.py", + "sha256": "3b03d1e23c094b762dc4f7fdde2a0179ef33e6975c1f5076353b15eae1f1f3df", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6626 + }, + { + "path": "truesight/truesight/external/vllm_driver.py", + "sha256": "9c82a04891cdd399fd0fd537c64d5a955800141c1687194708413e18b703430d", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8228 + }, + { + "path": "truesight/truesight/file_utils.py", + "sha256": "06f9df4a8de3a5b9ba959354f692ae0b778a55fd7ce5191d3400a474abd0f93d", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 7645 + }, + { + "path": "truesight/truesight/finetuning/daemons/run_openai_finetuning_job.py", + "sha256": "63bef4e024a563c4e5bedf7fcb20b36deeab0b3006afff11bd9aca0f5d955075", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 9, + "row": 9838 + }, + { + "path": "truesight/truesight/finetuning/daemons/run_unsloth_finetuning_job.py", + "sha256": "418179db056f550927e8a438c3bb525d82c336a6b7336b10884a7517fbc2a6a4", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 9, + "row": 10097 + }, + { + "path": "truesight/truesight/finetuning/services.py", + "sha256": "240a5990cbe508ac337eec7458569c640014b46de322c23a0f805c3f7d46598e", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 9, + "row": 9577 + }, + { + "path": "truesight/truesight/fn_utils.py", + "sha256": "100f7e5df735c945fb88019f73d7f616e6d31bf55cb4509e4d61c67c8ba8d6ca", + "language": "Python", + "lines": 287, + "truncated": false, + "block": 9, + "row": 10755 + }, + { + "path": "truesight/truesight/list_utils.py", + "sha256": "da6c4d4404c3750dab3a9f7ce001910d04d7b4ac5b856667aeba367f32c10ed5", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 8361 + }, + { + "path": "truesight/truesight/llm/judgments.py", + "sha256": "92546d492e5f7fb4c3cdd96b028381bbacfcc92b4b999a7dd775892f26b0d7a2", + "language": "Python", + "lines": 381, + "truncated": false, + "block": 9, + "row": 11520 + }, + { + "path": "truesight/truesight/llm/services.py", + "sha256": "98dfaa47ad51efa84bf02649f299cf78bd273fd0f4b2a990d7f997c148f4e773", + "language": "Python", + "lines": 521, + "truncated": false, + "block": 9, + "row": 11727 + }, + { + "path": "truesight/truesight/llm_utils.py", + "sha256": "0295d7e67e687308bb74e96976ddb34187d1beb09c6453ed507b3cd1e471ab88", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7727 + }, + { + "path": "truesight/truesight/magic_utils.py", + "sha256": "1b1bf6043602990ceca236d80d1ffbe5d0933fa952bbdf6c87ccdcd6216ab3b6", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6987 + }, + { + "path": "truesight/truesight/parse_utils.py", + "sha256": "410219a7958352374d2b7497fed68dd6d6861e4d2d1cc563e6621ac84183280e", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 9, + "row": 6680 + }, + { + "path": "truesight/truesight/pd_utils.py", + "sha256": "d3d74d7230e0b382997ea8ffcffd6ad9fa698cdfaa448e4ade0e6f1a893732a7", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6897 + }, + { + "path": "truesight/truesight/plot_utils.py", + "sha256": "7e0c549b2f98bdadc0de47a6cea3ee4ed886e0a6a4ea875bd54bca440dbdfa09", + "language": "Python", + "lines": 708, + "truncated": false, + "block": 9, + "row": 12027 + }, + { + "path": "truesight/truesight/prompt_utils.py", + "sha256": "834db44c5d0fe3f6fafc4e16b73712e0b01de014ecd15f0781b1ca09084c4582", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6665 + }, + { + "path": "truesight/truesight/stats_utils.py", + "sha256": "bf2a9789d67269920fd1436fdcd261642fb84b4bec2c38df6138ae1fea17bd87", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8260 + }, + { + "path": "truesight/truesight/utils/rate_limiter.py", + "sha256": "8df96fc3f276d730bb86f455ef8998c567b5d742ada265161254b4877e8d895a", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 7758 + } + ] +} \ No newline at end of file diff --git a/manifests/81/github.com__gloewing__photometry_flmm.json b/manifests/81/github.com__gloewing__photometry_flmm.json new file mode 100644 index 0000000000000000000000000000000000000000..5bcad8fb6469244c23ec2c6b70f352a17dee4b83 --- /dev/null +++ b/manifests/81/github.com__gloewing__photometry_flmm.json @@ -0,0 +1,489 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/gloewing/photometry_flmm", + "url": "https://github.com/gloewing/photometry_FLMM/tree/main", + "host": "github.com", + "commit": "6139fc14acd3f0f8d60608f9d8850fe19f240e61", + "license": "CC0-1.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Figures/Appendix_Citations/photometry_mentions.R", + "sha256": "1f485f1ca6eee66f01940d04d13781f5cc880c05d4319ee4748a0aebf16eb3d2", + "language": "R", + "lines": 39, + "truncated": false, + "block": 9, + "row": 12900 + }, + { + "path": "Figures/Appendix_DA_Adapts/da_adapts_learn_analysis_Interaction_Avg.R", + "sha256": "6c880082a5582eb2ad37715544d71f98bb5c0d3b719038a5afcc1ce2049d49be", + "language": "R", + "lines": 253, + "truncated": false, + "block": 9, + "row": 13621 + }, + { + "path": "Figures/Appendix_DA_Adapts/da_adapts_learn_fReg.R", + "sha256": "e5182d480fd0a32b789e926fb3ff24e3830b90fca50ceb988ce2ee422bdceea3", + "language": "R", + "lines": 397, + "truncated": false, + "block": 9, + "row": 13739 + }, + { + "path": "Figures/Figure 6/science_paper_Fig4G-I Inset.R", + "sha256": "3401cac1e9653ca3aa19c559a37f284aaef9479a40be3c2809bf63f3debd4506", + "language": "R", + "lines": 639, + "truncated": false, + "block": 9, + "row": 13817 + }, + { + "path": "Figures/Figure 6/science_paper_Fig4G-I.R", + "sha256": "3632f9ddfd8055fbe29fd3468cb240973c9bd4e73fcbc6e4f0d0b548393df7fa", + "language": "R", + "lines": 382, + "truncated": false, + "block": 9, + "row": 13745 + }, + { + "path": "Figures/Figure 6/science_paper_FigG-I Photobleach.R", + "sha256": "05e192d2ef2bcb4c577ecaeadcd491e53dfde9526f26a13495d888aedb0c7030", + "language": "R", + "lines": 513, + "truncated": false, + "block": 9, + "row": 13780 + }, + { + "path": "Figures/Figure_1/da_adapts_learn_intro.R", + "sha256": "94b305dee345136ee4153254a19a9a1d731e2407d6e7c89e172160aa71047606", + "language": "R", + "lines": 629, + "truncated": false, + "block": 9, + "row": 13814 + }, + { + "path": "Figures/Figure_12/science_paper_Exp1-lick_aligned_Lick_bout_Figures.R", + "sha256": "adf4706ac95681579c8d28f5a6f0dd5bee5dea590d3d5eaf4aa76df74e1dfd6b", + "language": "R", + "lines": 265, + "truncated": false, + "block": 9, + "row": 13670 + }, + { + "path": "Figures/Figure_14/Exp1 - Cue Aligned Trial Effect.R", + "sha256": "68233dd4124cc146fba3654363adea7dd243672303fe4d931d2181765301ac12", + "language": "R", + "lines": 349, + "truncated": false, + "block": 9, + "row": 13728 + }, + { + "path": "Figures/Figure_16/science_background_rewards.R", + "sha256": "0755d0f2b181c0e87229eca98645ef671d7951893220e9479ba4fbbf0d1ea3b1", + "language": "R", + "lines": 468, + "truncated": false, + "block": 9, + "row": 13782 + }, + { + "path": "Figures/Figure_17/science_paper_Fig6A-D.R", + "sha256": "7d1668af518b923a118886fe5ee7e6e8f250935130221686e300f5521983020b", + "language": "R", + "lines": 322, + "truncated": false, + "block": 9, + "row": 13710 + }, + { + "path": "Figures/Figure_2/FLMM Explanation Inset New.R", + "sha256": "6e055424469753660b9730bcdb109b76c40b772f7c833861938ad4d02473abb0", + "language": "R", + "lines": 718, + "truncated": false, + "block": 9, + "row": 13829 + }, + { + "path": "Figures/Figure_2/method_explanation_fig.R", + "sha256": "e176687d5cdfba3cfc82e4b53f553f04e1d54e01d5110bbd2120226f982f071f", + "language": "R", + "lines": 567, + "truncated": false, + "block": 9, + "row": 13795 + }, + { + "path": "Figures/Figure_2/signal_heatmap.R", + "sha256": "2259a4ae787e5d9bcaa3090c1fb55fe6544c6cc243439f7fd55455cabd908447", + "language": "R", + "lines": 263, + "truncated": false, + "block": 9, + "row": 13653 + }, + { + "path": "Figures/Figure_3/Exp1 - Figure3.R", + "sha256": "fbc392fdf23eab4f30e097be84d2fbd378366d7fdabaea69f170bc37ee585e96", + "language": "R", + "lines": 349, + "truncated": false, + "block": 9, + "row": 13740 + }, + { + "path": "Figures/Figure_4/Exp1 - Lick Aligned IRI Author Analysis.R", + "sha256": "4c63c6e66bbedb91cf541aa4c9dd81913e2c4cbff8b856ecd2c9e11345ee6d5e", + "language": "R", + "lines": 444, + "truncated": false, + "block": 9, + "row": 13767 + }, + { + "path": "Figures/Figure_4/Exp1 - Lick Aligned.R", + "sha256": "542c99bd72e87c55360306e5d1fc2a2ffcbe1c0f20c3413f018eb2e92f342422", + "language": "R", + "lines": 463, + "truncated": false, + "block": 9, + "row": 13777 + }, + { + "path": "Figures/Figure_5/Exp1 - Lick Aligned Photobleach.R", + "sha256": "6e04d2d551f51a3ade94b03a279052098aa4b1ad61cbf66d5d9d9aa331918041", + "language": "R", + "lines": 795, + "truncated": false, + "block": 9, + "row": 13834 + }, + { + "path": "Figures/Figure_5/Exp1 - Lick Aligned.R", + "sha256": "542c99bd72e87c55360306e5d1fc2a2ffcbe1c0f20c3413f018eb2e92f342422", + "language": "R", + "lines": 463, + "truncated": false, + "block": 9, + "row": 13777 + }, + { + "path": "Figures/Figure_5/Simpsons_Figs Final.R", + "sha256": "82bb40a1fc569042697e798e4f96d21ed91e473abab15b29e0151bc24f8a36b7", + "language": "R", + "lines": 514, + "truncated": false, + "block": 9, + "row": 13797 + }, + { + "path": "Figures/Figure_8/mixed_effects_explanation.R", + "sha256": "22fbccff4fab2f90424a65aa7e9e2da3111c3f8ca36dc9901508d6237ef3572a", + "language": "R", + "lines": 458, + "truncated": false, + "block": 9, + "row": 13758 + }, + { + "path": "Figures/Simulations/Simulation_Code/fui.R", + "sha256": "c5b5aae96d2162d13a307d4de9165a05bc18afbebe9c74f096f8f7565b41e38b", + "language": "R", + "lines": 1485, + "truncated": false, + "block": 9, + "row": 13859 + }, + { + "path": "Figures/Simulations/Simulation_Code/photo_simulation_science_Figures.R", + "sha256": "7803e8fb555b8639f5bed6f5111d281e7602623b2c398455d2a93e8710c1a42a", + "language": "R", + "lines": 596, + "truncated": false, + "block": 9, + "row": 13809 + }, + { + "path": "Figures/Simulations/Simulation_Code/photo_simulation_science_figs_delayLength.R", + "sha256": "7dcb7934d2205eeaf00db49eaa0dfe0355edddaa6af0a6f618c6d2cfc5523ae0", + "language": "R", + "lines": 426, + "truncated": false, + "block": 9, + "row": 13752 + }, + { + "path": "Figures/Simulations/Simulation_Code/photometry_sim_fLME-Science-lengthenRewardPeriod.R", + "sha256": "7bb8d6f2eedae9842d64ba83e336acac14f355603639dad9381316e242f7167d", + "language": "R", + "lines": 903, + "truncated": false, + "block": 9, + "row": 13844 + }, + { + "path": "Figures/Simulations/Simulation_Code/photometry_sim_fLME-Science_Delay_indivi_obs.R", + "sha256": "595d43621007af2c1564f79cb637097b869c54549e7ec4cb691dbe992f64d614", + "language": "R", + "lines": 677, + "truncated": false, + "block": 9, + "row": 13826 + }, + { + "path": "Figures/Simulations/Simulation_Code/photometry_sim_fLME-Science_indivi_obs.R", + "sha256": "540c2a701952f11aaaabe46e4a1bcfdecf532b78a7de1af6ea656438e8a59787", + "language": "R", + "lines": 553, + "truncated": false, + "block": 9, + "row": 13808 + }, + { + "path": "Figures/Simulations/Simulation_Code/photometry_sim_fLME_fn_multi.R", + "sha256": "0596d98ac2608e5188e170f9d240d571236b2aa301d66d7ece890f969be40a52", + "language": "R", + "lines": 423, + "truncated": false, + "block": 9, + "row": 13743 + }, + { + "path": "Figures/Utility_Functions/existing_funs.R", + "sha256": "df65d047b0497729d6761e1f62936f5215f9933b9a369a9d162989ec4f2baf8e", + "language": "R", + "lines": 121, + "truncated": false, + "block": 9, + "row": 13326 + }, + { + "path": "Figures/Utility_Functions/fui.R", + "sha256": "c5b5aae96d2162d13a307d4de9165a05bc18afbebe9c74f096f8f7565b41e38b", + "language": "R", + "lines": 1485, + "truncated": false, + "block": 9, + "row": 13859 + }, + { + "path": "Figures/Utility_Functions/interval_label.R", + "sha256": "a37bd80459d52b4a3c80254b28e52e30462d86ce2d6ff01fca7a103124725032", + "language": "R", + "lines": 52, + "truncated": false, + "block": 9, + "row": 12974 + }, + { + "path": "Figures/Utility_Functions/photo_sim.sh", + "sha256": "0639ee513ff34cccc31da15d0806a815fc3be4587d0c95cb27850b32b299f85e", + "language": "Shell", + "lines": 21, + "truncated": false, + "block": 9, + "row": 14203 + }, + { + "path": "Figures/Utility_Functions/plot_adjust.R", + "sha256": "bc7abd829c07b7393eb86307a10c48eefa9edf0a8d486dd975964cea2dcaeff5", + "language": "R", + "lines": 22, + "truncated": false, + "block": 9, + "row": 12800 + }, + { + "path": "Figures/Utility_Functions/plot_fGLMM.R", + "sha256": "47e655fe1b543267614dff1e6b8d4bafad9afc7945a85aa662ad9d2fb08c36c4", + "language": "R", + "lines": 83, + "truncated": false, + "block": 9, + "row": 13161 + }, + { + "path": "Figures/Utility_Functions/plot_fGLMM_RE.R", + "sha256": "713e99a205b77a180920bb5e66360cc810eeb36e53d23120a7c99c09462695fa", + "language": "R", + "lines": 106, + "truncated": false, + "block": 9, + "row": 13288 + }, + { + "path": "Figures/Utility_Functions/plot_fGLMM_new.R", + "sha256": "cdd4847378e26f57aa5b3deae9d6244436bc419db6f18cc3d483b6b85315b4fa", + "language": "R", + "lines": 92, + "truncated": false, + "block": 9, + "row": 13220 + }, + { + "path": "Figures/Utility_Functions/plot_fReg.R", + "sha256": "9ed0978e785217efeda03542828da5a3dfc2c31f46f9fc15feb66c97d90b1f11", + "language": "R", + "lines": 57, + "truncated": false, + "block": 9, + "row": 13055 + }, + { + "path": "Figures/Utility_Functions/plot_fReg_new.R", + "sha256": "ad925f1746782d0fea8d72536993ba6f2f3bffdd2efa60e0998579293f51649b", + "language": "R", + "lines": 79, + "truncated": false, + "block": 9, + "row": 13138 + }, + { + "path": "Figures/Utility_Functions/plot_fui.R", + "sha256": "14e9dd31e9ec5541165a48ac303e5814f7ddf926e7743c3530ef982dd9e5cb19", + "language": "R", + "lines": 149, + "truncated": false, + "block": 9, + "row": 13471 + }, + { + "path": "LICENSE", + "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499", + "language": "License", + "lines": 121, + "truncated": false, + "block": 1, + "row": 2210 + }, + { + "path": "README.md", + "sha256": "2d198a5b03b69aeaae8f601078d87b209429989e3e54ec7c7c32a9e0d80b6a48", + "language": "Text", + "lines": 96, + "truncated": false, + "block": 9, + "row": 14670 + }, + { + "path": "Tutorials/Photometry FLMM Guide Part I/fastFMM-photometry-binary.Rmd", + "sha256": "235a92bc20ae338d45f0b45d5950aed81387d559a09d69ad3d0009a1e54f696f", + "language": "R", + "lines": 244, + "truncated": false, + "block": 9, + "row": 13770 + }, + { + "path": "Tutorials/Photometry FLMM Guide Part I/fastFMM-photometry-binary.ipynb", + "sha256": "f966f0bd50455bc6b95c4cc497e1b11ff708a0e26c4f3137b8ec497b6507ac2e", + "language": "Jupyter", + "lines": 223, + "truncated": false, + "block": 9, + "row": 2633 + }, + { + "path": "Tutorials/Photometry FLMM Guide Part II/fastFMM-photometry-withinTrial.Rmd", + "sha256": "aaf7fe2a207e18b889ed826dfd06601d67d1192cf1c4c894bda53368c7259332", + "language": "R", + "lines": 114, + "truncated": false, + "block": 9, + "row": 13433 + }, + { + "path": "Tutorials/Photometry FLMM Guide Part II/fastFMM-photometry-withinTrial.ipynb", + "sha256": "ca212bac864729b1f945f2f26bfb9568689f330a9f110716592f967809de8646", + "language": "Jupyter", + "lines": 84, + "truncated": false, + "block": 9, + "row": 2387 + }, + { + "path": "Tutorials/Photometry FLMM Guide Part III/fastFMM-photometry-Correlation.Rmd", + "sha256": "74cb8ef4fe9f241ff922ca935743c16c09fc561818c75dea479230ff5b798ac5", + "language": "R", + "lines": 160, + "truncated": false, + "block": 9, + "row": 13660 + }, + { + "path": "Tutorials/Photometry FLMM Guide Part III/fastFMM-photometry-Correlation.ipynb", + "sha256": "17efa7493652e1b4e30332ced7c7c12d50c44f8fe7c1de54d02f5309d003906d", + "language": "Jupyter", + "lines": 146, + "truncated": false, + "block": 9, + "row": 2525 + }, + { + "path": "Tutorials/Photometry FLMM Guide Part IV/fastFMM-photometry-ANOVA.Rmd", + "sha256": "fab5b331bf9e45245ef0aff67248a7e472419cd5b57a1abd2498694560018c4a", + "language": "R", + "lines": 188, + "truncated": false, + "block": 9, + "row": 13708 + }, + { + "path": "Tutorials/Photometry FLMM Guide Part IV/fastFMM-photometry-ANOVA.ipynb", + "sha256": "0013f00d7c64ae486bd11f0d7896c5d268da2177e035219f475d69bb1b85bf46", + "language": "Jupyter", + "lines": 150, + "truncated": false, + "block": 9, + "row": 2503 + }, + { + "path": "Tutorials/Photometry FLMM Guide Part V/fastFMM-photometry-Interaction.Rmd", + "sha256": "1c2e4bea3bf6bc43ee06b932d5ef8e18376e882a365bc250b7b67102a17d2d32", + "language": "R", + "lines": 174, + "truncated": false, + "block": 9, + "row": 13748 + }, + { + "path": "Tutorials/Photometry FLMM Guide Part V/fastFMM-photometry-Interaction.ipynb", + "sha256": "68b3a23aa88c1cb1dd872e95223cfab912a4048d743c1a5d32f91c8255ae9f9f", + "language": "Jupyter", + "lines": 145, + "truncated": false, + "block": 9, + "row": 2599 + }, + { + "path": "Tutorials/Python rpy2 installation/R and rpy2 installation guide.ipynb", + "sha256": "adaed5deb60e08956b1565891bb464b3d3d54573211272ab172155316108f9da", + "language": "Jupyter", + "lines": 173, + "truncated": false, + "block": 9, + "row": 2429 + }, + { + "path": "plot_fui.R", + "sha256": "ac2d8e8f841b56910207eb8410f646dcd6a3bfa3b28bd1f120d166d19957174b", + "language": "R", + "lines": 167, + "truncated": false, + "block": 9, + "row": 13505 + } + ] +} \ No newline at end of file diff --git a/manifests/82/github.com__mijinjkwon__proj_insula_anic.json b/manifests/82/github.com__mijinjkwon__proj_insula_anic.json new file mode 100644 index 0000000000000000000000000000000000000000..c3235fb183bee3e0d997695f8eebaea30e0d6475 --- /dev/null +++ b/manifests/82/github.com__mijinjkwon__proj_insula_anic.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/mijinjkwon/proj_insula_anic", + "url": "https://github.com/mijinjkwon/proj_insula_anic", + "host": "github.com", + "commit": "6ec0273c6b97b730b0bde206d48f37e10ca65ff5", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3dc95c28caad6da197815aff4d1bf33877b43d5497ee5c3192aa07cc168a0163", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2774 + }, + { + "path": "README.md", + "sha256": "e653fca14f94e25d5734237206a1507994b19cb7d8ee5ebbd3a31d4317da5115", + "language": "Text", + "lines": 32, + "truncated": false, + "block": 9, + "row": 14517 + }, + { + "path": "SVM/mtSVM_insula_domain.m", + "sha256": "5684f26398475a40bd98f261a18344d6ee8bf69f853acfc61a577fcf228fa447", + "language": "MATLAB", + "lines": 143, + "truncated": false, + "block": 9, + "row": 5261 + }, + { + "path": "SVM/mtSVM_insula_subdomain.m", + "sha256": "7caa6530c1c2f3320ac6aba4b06895203eca963381e26a7d6d8d04cac6d3fa2f", + "language": "MATLAB", + "lines": 148, + "truncated": false, + "block": 9, + "row": 5308 + }, + { + "path": "SVM/mtSVMs_insula_apptVSaver_domain.m", + "sha256": "8a98611aab139cdac916cd96feee6e8e87051cfc0d62e6837777e2d7942be59b", + "language": "MATLAB", + "lines": 148, + "truncated": false, + "block": 9, + "row": 5298 + } + ] +} \ No newline at end of file diff --git a/manifests/82/github.com__thomazbastiaanssen__coffee.json b/manifests/82/github.com__thomazbastiaanssen__coffee.json new file mode 100644 index 0000000000000000000000000000000000000000..0a4b6735762d65d1b15548a7d560e5b4358a3a11 --- /dev/null +++ b/manifests/82/github.com__thomazbastiaanssen__coffee.json @@ -0,0 +1,210 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/thomazbastiaanssen/coffee", + "url": "https://github.com/thomazbastiaanssen/coffee/", + "host": "github.com", + "commit": "6c80dad8d30f79c2d8fb1e17692a7c4d6a79c56e", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.Rmd", + "sha256": "644d233a50566e1021b0b1390a7babae66a08dc8db8bc950a0fa5138517c83b7", + "language": "R", + "lines": 247, + "truncated": false, + "block": 9, + "row": 13468 + }, + { + "path": "README.md", + "sha256": "848d342b19d42666f9d9abd84107baf632af4e82ab57cf616d6a2f57257132fe", + "language": "Text", + "lines": 231, + "truncated": false, + "block": 9, + "row": 14645 + }, + { + "path": "scripts/annotate_metabs_WIP.R", + "sha256": "100d9645e47ce845884038c1a56fe65e9394f146c1b11648cba484bc3fec9ac1", + "language": "R", + "lines": 25, + "truncated": false, + "block": 9, + "row": 12819 + }, + { + "path": "scripts/fig_1_behav_cog_health_data.R", + "sha256": "47ed3bd70ad99c5c97fef24279d78b4c2fe3b512ca29dbd7159741019d97149e", + "language": "R", + "lines": 429, + "truncated": false, + "block": 9, + "row": 13776 + }, + { + "path": "scripts/fig_2_cytokine_data.R", + "sha256": "56822afef4d25de1d8aa509bd513f6c00214ccd1011eda64aa03d7f6f62fd1e6", + "language": "R", + "lines": 448, + "truncated": false, + "block": 9, + "row": 13760 + }, + { + "path": "scripts/fig_2_faecal_metabolome_data_reclassed.R", + "sha256": "91c0785eb107c14e2afa4d212547e1138ea6ff4cf8ead296f2988a85ed64e5f2", + "language": "R", + "lines": 329, + "truncated": false, + "block": 9, + "row": 13683 + }, + { + "path": "scripts/fig_2_gi_metabolome_data.R", + "sha256": "29a34251dba831e7d2d08b5feaa8847def49c265c2312fce1a1f29d3a42b0bb2", + "language": "R", + "lines": 328, + "truncated": false, + "block": 9, + "row": 13716 + }, + { + "path": "scripts/fig_2_gi_microbiome_data.R", + "sha256": "6de5a817bcecb511b6968304510c2a73af9b102102e810a8c63e8e3395a5780c", + "language": "R", + "lines": 277, + "truncated": false, + "block": 9, + "row": 13661 + }, + { + "path": "scripts/fig_2_gi_omics_data.R", + "sha256": "8e7d3f1d3d309fb05a1b05ec5f7ff1635f1c5d9c0a67fe5baa92b301dfde6f7f", + "language": "R", + "lines": 285, + "truncated": false, + "block": 9, + "row": 13644 + }, + { + "path": "scripts/fig_2_urine_metabolome_data.R", + "sha256": "a2984643eb09b9a60645b95b6a4bdae08306ac920ff336a3d2b6eec4afe03079", + "language": "R", + "lines": 247, + "truncated": false, + "block": 9, + "row": 13608 + }, + { + "path": "scripts/fig_2_urine_metabolome_data_reclassed.R", + "sha256": "38c451fb11b46d4f057b4a4e49f0f3c20de326142c33f9bdc0dbbd18ec00f350", + "language": "R", + "lines": 310, + "truncated": false, + "block": 9, + "row": 13675 + }, + { + "path": "scripts/fig_final_integration.R", + "sha256": "1b35ddef0c748938e648a0e93c20dbeafb7706d55d0f01b280ee9c4ee904e4c3", + "language": "R", + "lines": 320, + "truncated": false, + "block": 9, + "row": 13694 + }, + { + "path": "scripts/fig_final_integration_MB_fecmet_cog.R", + "sha256": "26b5e270ab155f82f3398ca7e98e5c81b037ecbbc13d02489a72e7331c6ae48a", + "language": "R", + "lines": 336, + "truncated": false, + "block": 9, + "row": 13714 + }, + { + "path": "scripts/fig_final_integration_MB_urmet_cog.R", + "sha256": "0c630b1b7321c6c15c2001fc6d78cdd1a29f5e8488287fbd8e3db06e0a15d09f", + "language": "R", + "lines": 339, + "truncated": false, + "block": 9, + "row": 13722 + }, + { + "path": "scripts/fig_final_integration_fecmet_MB_behav.R", + "sha256": "9d03af4e4cfa17c9d5416de08d971b25744e37648081d481a2d1c3038f4043c1", + "language": "R", + "lines": 332, + "truncated": false, + "block": 9, + "row": 13713 + }, + { + "path": "scripts/fig_final_integration_urmet_MB_behav.R", + "sha256": "d4156036070fe9b0d914bef2cfd907b75afd39f1a1479ab0941fca3e2e65d202", + "language": "R", + "lines": 336, + "truncated": false, + "block": 9, + "row": 13721 + }, + { + "path": "scripts/generate_stats_tables.R", + "sha256": "b3400f1c3279a9e69a886f6db967a4aa5db74d3c7e1eb64db7ce30f03d0e33f1", + "language": "R", + "lines": 1020, + "truncated": false, + "block": 9, + "row": 13839 + }, + { + "path": "subscripts/calc_alpha.R", + "sha256": "1d1d9606d82838dd6409c551ed2df46a0d797fd48937c736e85b1df8f73f3cd6", + "language": "R", + "lines": 29, + "truncated": false, + "block": 9, + "row": 12789 + }, + { + "path": "subscripts/load_and_clean_data.R", + "sha256": "d0bbeaab674422be84f8a0277be94febcd89b7f4541d38b4d0df98843d708977", + "language": "R", + "lines": 99, + "truncated": false, + "block": 9, + "row": 13144 + }, + { + "path": "subscripts/prep_cognition.R", + "sha256": "9d54f86506b2f26aa53992d793585fdffc05cb4c7dd120123190d5a26e024285", + "language": "R", + "lines": 58, + "truncated": false, + "block": 9, + "row": 13047 + }, + { + "path": "subscripts/prep_cytokines.R", + "sha256": "2e3a79f23a522e9dc2776c4fc2fe6a889ed66bd455090be8fecc655eb12e04f7", + "language": "R", + "lines": 325, + "truncated": false, + "block": 9, + "row": 13667 + } + ] +} \ No newline at end of file diff --git a/manifests/83/zenodo__10838367.json b/manifests/83/zenodo__10838367.json new file mode 100644 index 0000000000000000000000000000000000000000..9c6557f7584b28d2b07c353b07435d23cecd34fb --- /dev/null +++ b/manifests/83/zenodo__10838367.json @@ -0,0 +1,111 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:10838367", + "url": "10.5281/zenodo.10838367", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "3e761d0c2e11b814fcaac7b9f88533eb662c8e610bccee0b3c6d4e6fd9caf557", + "language": "Text", + "lines": 149, + "truncated": false, + "block": 9, + "row": 14673 + }, + { + "path": "preprocess/download.py", + "sha256": "12b0c4c79c1c9c6fe772e916deb815d7554cab0b1e8b3882af3e04d6b0707c3f", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 10491 + }, + { + "path": "preprocess/gff_longest_transcript.py", + "sha256": "d70137f9b54276525ad2fe26bb010701ffb1e9639afa1f5913966cb694901aef", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 9127 + }, + { + "path": "preprocess/lsf.py", + "sha256": "e30935b93050017ce21d262f31bcc6e0e9af505c93596cf0a45159f2cbf98e15", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 9394 + }, + { + "path": "src/Add.col.py", + "sha256": "307937d4b8351a5bb07a5d30e730c290257b481840972937970cec69944d7009", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6723 + }, + { + "path": "src/COVT.gmean_cal.py", + "sha256": "56b77ba21694d2cf5cfd98a5c51d76746c1bab1966ab7f22d5ed8b0820c954af", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 9, + "row": 6622 + }, + { + "path": "src/GROSeqPL_v3_updated.py", + "sha256": "d63b00f64f5c93576dd407cb5a5570812785a2c32266067beead8ee5da00f4bc", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 9, + "row": 10820 + }, + { + "path": "src/bam2bw.py", + "sha256": "a0403703581e95b3caf1bce10fbff0274705136569e163fe9c030f67654cce0d", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 8914 + }, + { + "path": "src/bam2wig.py", + "sha256": "adfba8e651f03398b04620588ea9e6acb0f3276581ea1a6fd6ed5c0a134cd721", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 9367 + }, + { + "path": "src/extract_rpkm.py", + "sha256": "3fc5a7787948b5ec1276fd4702141032edb72320c0a086ed75a2574ce196a4c5", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6628 + }, + { + "path": "src/misc.py", + "sha256": "ff890366b93a6281780d8e5f949feff4975fc380eead365b704d83ce8f3e6e34", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 7651 + } + ] +} \ No newline at end of file diff --git a/manifests/83/zenodo__18765302.json b/manifests/83/zenodo__18765302.json new file mode 100644 index 0000000000000000000000000000000000000000..a4370ff0090bf7d13547308caf9db32720d2435a --- /dev/null +++ b/manifests/83/zenodo__18765302.json @@ -0,0 +1,192 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18765302", + "url": "10.5281/zenodo.18765302", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "QM_validations/PYD/radical/matlab_extract_spect.m", + "sha256": "3df2d189f33ff8dad1d4267002e453d6b8078398ea7982cb20423d5b12afc859", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3175 + }, + { + "path": "QM_validations/script_plots/BDE_plot.py", + "sha256": "f441fee5e1cec0107ce9f5cfb3d262f3f5cab2f54b5b529396b99442086739e8", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 9, + "row": 8745 + }, + { + "path": "QM_validations/script_plots/EPR_PYD_plot.py", + "sha256": "29047c355f443e763bf010a2dbb44740e66b667a39d0c4591c50ca4c6423f6c6", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7967 + }, + { + "path": "QM_validations/script_plots/HFC_vs_NoHFC.py", + "sha256": "a23236df557856153d7fa3e757ad3df4ea961532246100e72fbb32100b61b0f5", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 9, + "row": 8416 + }, + { + "path": "QM_validations/script_plots/severalEPR_PYD_plotSI.py", + "sha256": "53c078bdd55a2dcea9c12f6250a3966c41f3f0d89a39c44a9dd790706651a695", + "language": "Python", + "lines": 173, + "truncated": false, + "block": 9, + "row": 10074 + }, + { + "path": "README.md", + "sha256": "4d833e17a4deafc927db8122418e863c90697f50fb0d992f13d833a94f043790", + "language": "Text", + "lines": 15, + "truncated": false, + "block": 9, + "row": 14478 + }, + { + "path": "collagen_HAT/code/2c_plot_distances.py", + "sha256": "b5b68e32ebecaf3d3437805ee0f3a800461c9153d82364125df9e9e65c477218", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7662 + }, + { + "path": "collagen_HAT/code/2d_plot_DOPA_test.py", + "sha256": "f6fc512cf1af8172e4305346828ff6c2a1965d25145e947b369dec92a09dea7d", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8100 + }, + { + "path": "collagen_HAT/code/A2a_plot_aa_barriers.py", + "sha256": "a9f8c32768cb0747e3741470927ed45f23d56f9b6f1619da03cca188aa062f4f", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7196 + }, + { + "path": "collagen_HAT/code/A2bc_plot_radical_location.py", + "sha256": "1fe09dbc352c2db7fd649ed4bd43fb35f667f9acfdd02fb6368ad883316f929f", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 8796 + }, + { + "path": "collagen_HAT/code/A2d_plot_multiple_testing.py", + "sha256": "b9831257dac40c47f2d15ea3a08f7d7d7cf31a558875e0a5ac5f73ea39008f60", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 8283 + }, + { + "path": "collagen_HAT/code/A2ef_plot_DOPA_H_acceptors_donors.py", + "sha256": "d2b91bd18f81df72342fcf3d3f9abc3a2cf4c9fca72792cd7128a8e5612ec63e", + "language": "Python", + "lines": 112, + "truncated": false, + "block": 9, + "row": 8362 + }, + { + "path": "collagen_HAT/code/S6ab_analysis_n_samples.py", + "sha256": "38ab4e897f37efe2e4171b7e0745ee473333ef2c01127b9b508e4636b196f2a4", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7666 + }, + { + "path": "collagen_HAT/code/S6cdef_analysis_sampling-nsmallest.py", + "sha256": "56b60a1ec0ab3d20069a65c32ef8704ebc0433ae809e54fcd98da5adab7cd9ae", + "language": "Python", + "lines": 229, + "truncated": false, + "block": 9, + "row": 10611 + }, + { + "path": "collagen_HAT/code/S7af_translation-barrier.py", + "sha256": "af0d4e2f10573ac594fd9ce9071f285e873573e2e002f6ce41e559bc7adb6687", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 7697 + }, + { + "path": "collagen_HAT/code/S7b_translation_nsmallest.py", + "sha256": "d9e1f00b123c484ad60ecec5fef48ab18c0baeaafbb91e513e56b42d6a6295bd", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 8191 + }, + { + "path": "collagen_HAT/code/S7cd_relative_rates.py", + "sha256": "b6d5cd54f8675baa6c76b4a7ebcda0b8783891998baf86017e8eebb69f8077df", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 9, + "row": 9172 + }, + { + "path": "collagen_HAT/code/S7e_brier.py", + "sha256": "f4d797827c5c716be5ab2b7d74a0743902b983846d044586e25177e1bfa089af", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 9, + "row": 7422 + }, + { + "path": "collagen_HAT/setup/files/_modules.sh", + "sha256": "fcd490a116d2d9341a0676c8c338514b64db95f5b3b4fcd4227c30daeff87700", + "language": "Shell", + "lines": 10, + "truncated": false, + "block": 9, + "row": 13985 + }, + { + "path": "collagen_HAT/setup/files/jobscript.sh", + "sha256": "95211ab0376115a38592ee78d4dc314cdb91dbc47a80bd5591e61acfc8dddb20", + "language": "Shell", + "lines": 44, + "truncated": false, + "block": 9, + "row": 14134 + } + ] +} \ No newline at end of file diff --git a/manifests/84/github.com__aharoni-lab__miniscope-daq-qt-software.json b/manifests/84/github.com__aharoni-lab__miniscope-daq-qt-software.json new file mode 100644 index 0000000000000000000000000000000000000000..ae7c4e4cfea65aeb2c98dd418f370677f9af06cb --- /dev/null +++ b/manifests/84/github.com__aharoni-lab__miniscope-daq-qt-software.json @@ -0,0 +1,651 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/aharoni-lab/miniscope-daq-qt-software", + "url": "https://github.com/Aharoni-Lab/Miniscope-DAQ-QT-Software/wiki", + "host": "github.com", + "commit": "7e644bf52ba5b6f4cdbe0be7f8ed52fd2f792aaa", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "02596dbaa2d03cd62fd5010cdd4968edbe6b564fbc6997008d2c0b7928c9db26", + "language": "Text", + "lines": 79, + "truncated": false, + "block": 9, + "row": 14678 + }, + { + "path": "Scripts/DLCwrapper.py", + "sha256": "6ff07addc2590458eba270caf23a4fb104c9c55af25f7dc6519f87c41d0b50b3", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 8016 + }, + { + "path": "packaging/linux/build-appimage.sh", + "sha256": "6738a184b8a3ff692f79d85ee7c8c2d61aa65d161c602c429a626db16008d3e0", + "language": "Shell", + "lines": 174, + "truncated": false, + "block": 9, + "row": 14378 + }, + { + "path": "packaging/macos/build-dmg.sh", + "sha256": "4fab69ab9056be413e44d91fbd51be054019c9117bc95826db7531c8ce044065", + "language": "Shell", + "lines": 70, + "truncated": false, + "block": 9, + "row": 14295 + }, + { + "path": "source/avfenumeratormac.h", + "sha256": "6ea75c654b87bc187665cca57dfddaba22ccaf45c33b5810ffc3654de2ccfff3", + "language": "C/C++", + "lines": 120, + "truncated": false, + "block": 9, + "row": 1587 + }, + { + "path": "source/avfframegrabbermac.h", + "sha256": "e72d0dd453455d2abca479863af3b898197fbc77f75d51fceb46f3f1ed8c505e", + "language": "C/C++", + "lines": 50, + "truncated": false, + "block": 9, + "row": 1296 + }, + { + "path": "source/backend.cpp", + "sha256": "bdf35ce3d28e4c0465ae029484f4c8298b71c2bb5bc9ec28e218fa6588027bb3", + "language": "C++", + "lines": 1890, + "truncated": false, + "block": 9, + "row": 1089 + }, + { + "path": "source/backend.h", + "sha256": "26f05d26cfd960a90a1e11ffb8dbfe8ece57411f2d501f35752f68337ac62448", + "language": "C/C++", + "lines": 395, + "truncated": false, + "block": 9, + "row": 1795 + }, + { + "path": "source/behaviorcam.cpp", + "sha256": "2d064a62009131d8da19ff1da6e957c6f30993eb24146b1e32c73a6ed000c1b1", + "language": "C++", + "lines": 71, + "truncated": false, + "block": 9, + "row": 333 + }, + { + "path": "source/behaviorcam.h", + "sha256": "03554203a3e0d53a029cd983a2bad6fe0fcc05b2c024d390fbb02dcd119beb8d", + "language": "C/C++", + "lines": 62, + "truncated": false, + "block": 9, + "row": 1230 + }, + { + "path": "source/behaviortracker.cpp", + "sha256": "d24b84cf9b266564de6ff8ce6e2a95625f522f34a05a7f768831bfeb762a1b2a", + "language": "C++", + "lines": 1033, + "truncated": false, + "block": 9, + "row": 1019 + }, + { + "path": "source/behaviortracker.h", + "sha256": "1c99dcedb71c01f21a83c24966d8c1678aa23a33d1ddfafaaaa77090e7e6a02a", + "language": "C/C++", + "lines": 269, + "truncated": false, + "block": 9, + "row": 1662 + }, + { + "path": "source/behaviortrackerworker.cpp", + "sha256": "a191111c70dd08cad3898cd21fda23c83a35871e7569a731bb148a4bc4b6c2e8", + "language": "C++", + "lines": 295, + "truncated": false, + "block": 9, + "row": 759 + }, + { + "path": "source/behaviortrackerworker.h", + "sha256": "e1f3887c0b1830d05f66c9eb64dc748f72a83811b2bde48f4bae21c3b64622b3", + "language": "C/C++", + "lines": 83, + "truncated": false, + "block": 9, + "row": 1313 + }, + { + "path": "source/bundlepaths.cpp", + "sha256": "4508a5e93e4c96bda98a0731c676ce466a412f7ca5ddd055962e3aad6727e29b", + "language": "C++", + "lines": 125, + "truncated": false, + "block": 9, + "row": 480 + }, + { + "path": "source/bundlepaths.h", + "sha256": "fc7f3e997b452d2d2874573c28de28e2864f53545d07429b3cb7577bfda05857", + "language": "C/C++", + "lines": 64, + "truncated": false, + "block": 9, + "row": 1444 + }, + { + "path": "source/commutator.cpp", + "sha256": "5c3da9b9b9ed2550e9d9e69ae51d862c203ab7db6ef2989c8c548e2e84be88a6", + "language": "C++", + "lines": 299, + "truncated": false, + "block": 9, + "row": 813 + }, + { + "path": "source/commutator.h", + "sha256": "8409d25926e8a06129312e968cf0ea178942531de1229d7f3f15035a47173641", + "language": "C/C++", + "lines": 115, + "truncated": false, + "block": 9, + "row": 1539 + }, + { + "path": "source/configvalidator.cpp", + "sha256": "4adce6d88010504c383b6a62e458c87dfc2302962a2dbddff8b5a8e6b7e9f5ad", + "language": "C++", + "lines": 129, + "truncated": false, + "block": 9, + "row": 589 + }, + { + "path": "source/configvalidator.h", + "sha256": "390ca472ee0c1397d32aae246501247870803fc44d7bafb5e0df84c9273812f8", + "language": "C/C++", + "lines": 42, + "truncated": false, + "block": 9, + "row": 1318 + }, + { + "path": "source/controlpanel.cpp", + "sha256": "532d87f3a5e60633e4241005c4e0f5049e8ec7cc81c72255cb8f355c2ae1c485", + "language": "C++", + "lines": 165, + "truncated": false, + "block": 9, + "row": 563 + }, + { + "path": "source/controlpanel.h", + "sha256": "a9195aa9f849f94e4643050a7a5e146f0bada3526dece2ea0668c8be8f0bad1e", + "language": "C/C++", + "lines": 80, + "truncated": false, + "block": 9, + "row": 1425 + }, + { + "path": "source/datasaver.cpp", + "sha256": "39a357bb614338dc431fc03231cb4f2d13539303cb78830933d2c12b567d45fa", + "language": "C++", + "lines": 717, + "truncated": false, + "block": 9, + "row": 983 + }, + { + "path": "source/datasaver.h", + "sha256": "c5f44f338328c3aeae40d2da58327fab3cf6e88cd14308fa137964e04c7e218b", + "language": "C/C++", + "lines": 126, + "truncated": false, + "block": 9, + "row": 1544 + }, + { + "path": "source/main.cpp", + "sha256": "d6258533ce227161fe977268d5ef5f0edd33bcf62b1df5c07750c677f594ad75", + "language": "C++", + "lines": 279, + "truncated": false, + "block": 9, + "row": 835 + }, + { + "path": "source/miniscope.cpp", + "sha256": "0eb6a9de13b89431c72bb283b733e8d6f0bb652e20861528261538b1579cd2cb", + "language": "C++", + "lines": 404, + "truncated": false, + "block": 9, + "row": 893 + }, + { + "path": "source/miniscope.h", + "sha256": "98910fbf17220e77303297a0dc545b74409b4ee4e34ff2ed8de0b9f79a1ec451", + "language": "C/C++", + "lines": 97, + "truncated": false, + "block": 9, + "row": 1408 + }, + { + "path": "source/miniscopeprotocol.cpp", + "sha256": "8d699e0c6c0186ec1676b74bf3ff4c58b3bb5e806d890f1b628d4f6639f469fb", + "language": "C++", + "lines": 58, + "truncated": false, + "block": 9, + "row": 275 + }, + { + "path": "source/miniscopeprotocol.h", + "sha256": "94804c84df02e243f2afe3514846628f938b82244cec82d1c91db4ee9a818609", + "language": "C/C++", + "lines": 120, + "truncated": false, + "block": 9, + "row": 1579 + }, + { + "path": "source/monotonicclock.h", + "sha256": "3f11e288871707488c86e803343daf01c68757402d322658d55e4d1bc794e885", + "language": "C/C++", + "lines": 21, + "truncated": false, + "block": 9, + "row": 1145 + }, + { + "path": "source/newquickview.cpp", + "sha256": "717c2671c5c46d0e1b3f539cdb56687baabd30bd6d6844c4dddc0e18a4d87896", + "language": "C++", + "lines": 100, + "truncated": false, + "block": 9, + "row": 447 + }, + { + "path": "source/newquickview.h", + "sha256": "7fe8aaa36ba341c68df9b37df778e3d4cd168034d663cdd604317eeefb230d4b", + "language": "C/C++", + "lines": 48, + "truncated": false, + "block": 9, + "row": 1292 + }, + { + "path": "source/themecontroller.cpp", + "sha256": "89d8fb6a830a963541354db54ee115becc7b7ee8fc7d28ef39dad7ee0b16e178", + "language": "C++", + "lines": 59, + "truncated": false, + "block": 9, + "row": 289 + }, + { + "path": "source/themecontroller.h", + "sha256": "684f1ffd3cbd8a5bf1a9edcffa892cf47219f75da1c5b6f1635a286fb00afa60", + "language": "C/C++", + "lines": 39, + "truncated": false, + "block": 9, + "row": 1201 + }, + { + "path": "source/tracedisplay.cpp", + "sha256": "d6ecf1417b2c497aed4bae15fbdea9669b8310f942ae102f5cd377fe5bf5a4e5", + "language": "C++", + "lines": 1046, + "truncated": false, + "block": 9, + "row": 1004 + }, + { + "path": "source/tracedisplay.h", + "sha256": "3f81a894326387524d71fae9e009241cac19730143699425d37804813a2d603f", + "language": "C/C++", + "lines": 257, + "truncated": false, + "block": 9, + "row": 1642 + }, + { + "path": "source/twistcalculator.cpp", + "sha256": "d831dea5c926290b36cd635f4b421c65285df2c6c4ae511942bc0ce026617135", + "language": "C++", + "lines": 69, + "truncated": false, + "block": 9, + "row": 357 + }, + { + "path": "source/twistcalculator.h", + "sha256": "c67da4229d58640e6e9cfe8531224473a193b7527c5cac65f376e37422b376f3", + "language": "C/C++", + "lines": 52, + "truncated": false, + "block": 9, + "row": 1341 + }, + { + "path": "source/uvccontrolmac.cpp", + "sha256": "e734dc0b68a781a41fa24ed2c1d740eeeb850e09cde9dff114c72c7a74b5ff22", + "language": "C++", + "lines": 265, + "truncated": false, + "block": 9, + "row": 736 + }, + { + "path": "source/uvccontrolmac.h", + "sha256": "90aab5657fbf1a7eff15baba9e74376b209fcb2ea338778865be551226e2d1df", + "language": "C/C++", + "lines": 91, + "truncated": false, + "block": 9, + "row": 1491 + }, + { + "path": "source/uvcrequest.h", + "sha256": "7a174793169324982b9a8dce02ad03ce143a2585e7c356afb3e61b2186027e50", + "language": "C/C++", + "lines": 76, + "truncated": false, + "block": 9, + "row": 1357 + }, + { + "path": "source/videodevice.cpp", + "sha256": "dbd12e50e5dbe55b2aa0613b510dd6c10fff5f51e2db65b2edd777cd2ae3c698", + "language": "C++", + "lines": 1002, + "truncated": false, + "block": 9, + "row": 1038 + }, + { + "path": "source/videodevice.h", + "sha256": "f4d0ba3afe383866d7ab94a660ac44492b00f20c37459d81ef51bb5e99bf5d28", + "language": "C/C++", + "lines": 243, + "truncated": false, + "block": 9, + "row": 1701 + }, + { + "path": "source/videodisplay.cpp", + "sha256": "0ccb2585aff0d70e327c192778559d4b4deed64ea911d0a9f0e307055c6bf578", + "language": "C++", + "lines": 292, + "truncated": false, + "block": 9, + "row": 709 + }, + { + "path": "source/videodisplay.h", + "sha256": "ed11a9c7d7da7219323e03c3507e0d186ef0f991e79b6333fd5e6beaa6897a68", + "language": "C/C++", + "lines": 172, + "truncated": false, + "block": 9, + "row": 1590 + }, + { + "path": "source/videostreambase.cpp", + "sha256": "ebe9a522f627858c50464d03abc4ee6c01fa861770765428d95b03dafb8de369", + "language": "C++", + "lines": 291, + "truncated": false, + "block": 9, + "row": 807 + }, + { + "path": "source/videostreambase.h", + "sha256": "982c5cd771540eb224a319d86c6681fb18e09d2ecf8106ad6e141193c8f9f90e", + "language": "C/C++", + "lines": 254, + "truncated": false, + "block": 9, + "row": 1731 + }, + { + "path": "source/videostreamlibuvc.cpp", + "sha256": "0529123c41aaeec9d18247d2acfc15a1a02a17dc8d1c3db1594201c56eb045c8", + "language": "C++", + "lines": 272, + "truncated": false, + "block": 9, + "row": 700 + }, + { + "path": "source/videostreamlibuvc.h", + "sha256": "e0fdca32237af1293d6753c5dde6af2cce6ee4a899b472ad700797dde2846da5", + "language": "C/C++", + "lines": 54, + "truncated": false, + "block": 9, + "row": 1245 + }, + { + "path": "source/videostreammac.cpp", + "sha256": "80e5ec76196f0109b7dc0ef37180ee973b6209466791e3124c9cd3d4c23c4116", + "language": "C++", + "lines": 238, + "truncated": false, + "block": 9, + "row": 717 + }, + { + "path": "source/videostreammac.h", + "sha256": "c6a39a0d1da9277ab8f0079d8c28c802900dca6d651bc39e73f09d43dbcd0fc8", + "language": "C/C++", + "lines": 59, + "truncated": false, + "block": 9, + "row": 1324 + }, + { + "path": "source/videostreamocv.cpp", + "sha256": "1266ec5c0f7305c5dc845642ee8e9ffaccfef6a2733134a53abcd3758bab0178", + "language": "C++", + "lines": 361, + "truncated": false, + "block": 9, + "row": 828 + }, + { + "path": "source/videostreamocv.h", + "sha256": "c8f49ef231bd6892ac37cec98da116e133e32f588024a1caf5650b6674a66b84", + "language": "C/C++", + "lines": 67, + "truncated": false, + "block": 9, + "row": 1295 + }, + { + "path": "tests/tst_avfenumerator.cpp", + "sha256": "6f5003fb5e92647c4c4490c2d2a6b4752ea9b8b1ea83e98581b4d0a0223dc5bc", + "language": "C++", + "lines": 230, + "truncated": false, + "block": 9, + "row": 721 + }, + { + "path": "tests/tst_avfframegrabber.cpp", + "sha256": "77d00eac5d12689e9105b874fd5917dddebc3ebdcab50f3aba9ffd3b3b02e660", + "language": "C++", + "lines": 45, + "truncated": false, + "block": 9, + "row": 200 + }, + { + "path": "tests/tst_bundlepaths.cpp", + "sha256": "a30ef85de2b9afa04d1245fd9aef3974c3ccbac4886ceadd13f063bcd577f110", + "language": "C++", + "lines": 118, + "truncated": false, + "block": 9, + "row": 490 + }, + { + "path": "tests/tst_commutatorprotocol.cpp", + "sha256": "5f72255d71a921319c19b2de3e19ae5bc8ade1de7a1acadfcfd7370f7f3d2257", + "language": "C++", + "lines": 94, + "truncated": false, + "block": 9, + "row": 489 + }, + { + "path": "tests/tst_configform.cpp", + "sha256": "0c929c761d93834eb5a47bb2fa83091ebe9b625042c1d0c08aa1be3fbe9bb709", + "language": "C++", + "lines": 595, + "truncated": false, + "block": 9, + "row": 979 + }, + { + "path": "tests/tst_configvalidator.cpp", + "sha256": "3538a2a5480adfb957baad7c68310210b2a623e2e4ca72f509bff688edf329d7", + "language": "C++", + "lines": 249, + "truncated": false, + "block": 9, + "row": 756 + }, + { + "path": "tests/tst_datasaver.cpp", + "sha256": "9bcba6705bf8a5b9829bbcd58b509b93b4c3ed8a7c76c534e72d45fc81ba80e3", + "language": "C++", + "lines": 323, + "truncated": false, + "block": 9, + "row": 803 + }, + { + "path": "tests/tst_miniscopeprotocol.cpp", + "sha256": "b18cd6c5b90ce8be4685aec71a282a33c92ce4385733c593a8484833dbf466f3", + "language": "C++", + "lines": 229, + "truncated": false, + "block": 9, + "row": 676 + }, + { + "path": "tests/tst_sessionlifecycle.cpp", + "sha256": "435ae823bef7f5a3272ef17a18a5729d0221f60d1cf5ec7d3fc42fd0fe493aa9", + "language": "C++", + "lines": 775, + "truncated": false, + "block": 9, + "row": 1006 + }, + { + "path": "tests/tst_shadercompile.cpp", + "sha256": "554d095930e36b4a2bf2704e9c122c9fe10a6785a5fd2548e6182cc6f8a87fb2", + "language": "C++", + "lines": 92, + "truncated": false, + "block": 9, + "row": 429 + }, + { + "path": "tests/tst_twistcalculator.cpp", + "sha256": "b20baca21cd3f1e0b9d4e2b34bd80f7f7eae11ec6233fbe3cf5e1de32b92ae80", + "language": "C++", + "lines": 135, + "truncated": false, + "block": 9, + "row": 526 + }, + { + "path": "tests/tst_uvccontrolmac.cpp", + "sha256": "c56a8c2106975d9e8b97aa582bb8e75811d4d7355ee2a2187f5d32626735176a", + "language": "C++", + "lines": 57, + "truncated": false, + "block": 9, + "row": 262 + }, + { + "path": "tests/tst_uvcrequest.cpp", + "sha256": "922bb6a6d340fd097cfce16a21a53e0c3e74c1a9ae20606238f2f744b8ba41a8", + "language": "C++", + "lines": 85, + "truncated": false, + "block": 9, + "row": 372 + }, + { + "path": "tests/tst_videostreambase.cpp", + "sha256": "97517845318c0de40055a0835a9a855496c1f6a3ce0d13818dfa57e2dda4a45e", + "language": "C++", + "lines": 399, + "truncated": false, + "block": 9, + "row": 869 + }, + { + "path": "tools/deploy.py", + "sha256": "ae861f824a991577eba4960f11c6e934fe3a7fee94528d46631d82edafcdf513", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 9, + "row": 10338 + }, + { + "path": "tools/launcher.cpp", + "sha256": "4764534a0b3074d2c221b83a336b587368df49500e25eb3490d173bfb10e3d8a", + "language": "C++", + "lines": 44, + "truncated": false, + "block": 9, + "row": 284 + }, + { + "path": "tools/uvc-bench-mac.cpp", + "sha256": "bba29e83bed89e2b1c78b69d350f53243d82798d90249ebe41eb314beb4d5a30", + "language": "C++", + "lines": 158, + "truncated": false, + "block": 9, + "row": 639 + } + ] +} \ No newline at end of file diff --git a/manifests/84/zenodo__18002633.json b/manifests/84/zenodo__18002633.json new file mode 100644 index 0000000000000000000000000000000000000000..6744ec4de0e46792b6294a6f330ebc4deef75813 --- /dev/null +++ b/manifests/84/zenodo__18002633.json @@ -0,0 +1,120 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18002633", + "url": "https://doi.org/10.5281/zenodo.18002633", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "219d91c9a8c7893a128253e4ef8b470fe3bf6c1712781af8676e3987de8fc11f", + "language": "Text", + "lines": 207, + "truncated": false, + "block": 9, + "row": 14695 + }, + { + "path": "scripts/aggregate_llphyscore.py", + "sha256": "eb0ce50dce04d45a8dd7e79ce9886d2cd2515bedf82837f0403b96f65fac76b8", + "language": "Python", + "lines": 200, + "truncated": false, + "block": 9, + "row": 10252 + }, + { + "path": "scripts/analyze_correlations.py", + "sha256": "85da7f56b968e93efb278b247240a31631e9668d12269111c6eceaf2d5a34337", + "language": "Python", + "lines": 377, + "truncated": false, + "block": 9, + "row": 11642 + }, + { + "path": "scripts/extract_llphyscore.py", + "sha256": "5a60f6526d1de8264622fea08c5ebbe8dc743060dcbb61c88b6b8acb1a9f32a2", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 9, + "row": 8924 + }, + { + "path": "scripts/extract_phasepred_v2.py", + "sha256": "16cea5d96dc79018d12e84a66245826d4495d3a8414ef63d80ef04d0260db529", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 9, + "row": 9117 + }, + { + "path": "scripts/fetch_controls_pfam.py", + "sha256": "7c8694f9c39c283951cfa9311ab374c97f82df34a159156d6cfc76bba1d1fad6", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 9, + "row": 9595 + }, + { + "path": "scripts/fetch_idr_mobidb_v2.py", + "sha256": "6ac03682e10fc3bfbf0881f71427531e6a1751280145ab73a47b63d2f31ffec8", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 9, + "row": 10032 + }, + { + "path": "scripts/fetch_pfam_from_uniprot.py", + "sha256": "c2bf7f72b13dee3d9f3f1b764ceaf324eaaa58f4600ee008b255f3f47087a688", + "language": "Python", + "lines": 225, + "truncated": false, + "block": 9, + "row": 10289 + }, + { + "path": "scripts/idr_analysis.py", + "sha256": "17ac63326de21934bd4e089fda788e5c2a3d69fd05bfbba2498110e54ae46aaf", + "language": "Python", + "lines": 384, + "truncated": false, + "block": 9, + "row": 11538 + }, + { + "path": "scripts/pgls_analysis.py", + "sha256": "c5b0125b25525cd22bc7fd0610bb95574db485d73858fee593d699bb24c1803d", + "language": "Python", + "lines": 378, + "truncated": false, + "block": 9, + "row": 11418 + }, + { + "path": "scripts/statistical_validation.py", + "sha256": "a32bb5ccb4b921a2119bc8890ce9fd3684013ddfe80002203f0c2f3af96b33af", + "language": "Python", + "lines": 473, + "truncated": false, + "block": 9, + "row": 11789 + }, + { + "path": "scripts/supplementary_analyses.py", + "sha256": "4a85e3f822ace2b97d030c7faff11af4e5ee633e0afc569be05ab8779ab17a5b", + "language": "Python", + "lines": 469, + "truncated": false, + "block": 9, + "row": 11775 + } + ] +} \ No newline at end of file diff --git a/manifests/85/github.com__ashley-davey__ml-for-quantile.json b/manifests/85/github.com__ashley-davey__ml-for-quantile.json new file mode 100644 index 0000000000000000000000000000000000000000..f916160bacf02f4ba74e0635ed4172af6a39f9f3 --- /dev/null +++ b/manifests/85/github.com__ashley-davey__ml-for-quantile.json @@ -0,0 +1,75 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ashley-davey/ml-for-quantile", + "url": "https://github.com/Ashley-Davey/ML-For-Quantile", + "host": "github.com", + "commit": "665744f41f8c10aad2ceb480c733ce9d3875c2f1", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "0aa247578fc36c759ed4dca094e0b41fe8084b34b58502816c9f290b168b5695", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2791 + }, + { + "path": "algo.py", + "sha256": "c6403be6b1cafdb58159962fcfc78c70a04bc313bc472eaffd4e1f754100edee", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 9161 + }, + { + "path": "common.py", + "sha256": "645d4079ed31033de258f9a8ac5f4cecba2c724892fa66aad040f9caf46c4826", + "language": "Python", + "lines": 882, + "truncated": false, + "block": 9, + "row": 12325 + }, + { + "path": "main.py", + "sha256": "d93ce0ecff2b7bdbd56f4f8fb644c7749a0387045f608a71cc02d460dfd142be", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9203 + }, + { + "path": "pinn.py", + "sha256": "a9d9e087b43b336bc21fc0806db49aa70bb853678d47097354818a809b4dea84", + "language": "Python", + "lines": 304, + "truncated": false, + "block": 9, + "row": 10941 + }, + { + "path": "simulate_dual.py", + "sha256": "ecfc8c84b40565c185ba9cb5666f51f68d96e420f8335f4330961040d6d5377d", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 9, + "row": 9852 + }, + { + "path": "simulate_primal.py", + "sha256": "682012e298ebc6a7088c8a19937a6e8e5435161d91f3204dd49eb189d7229035", + "language": "Python", + "lines": 253, + "truncated": false, + "block": 9, + "row": 10796 + } + ] +} \ No newline at end of file diff --git a/manifests/87/zenodo__19363099.json b/manifests/87/zenodo__19363099.json new file mode 100644 index 0000000000000000000000000000000000000000..b97204881bcde5d1d548d9863a105770b0c47442 --- /dev/null +++ b/manifests/87/zenodo__19363099.json @@ -0,0 +1,165 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19363099", + "url": "10.5281/zenodo.19363099", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "eb11c8f51aa4c2341546cf66ca7e8017821c1e6c52b1398e76ff39d3fe0621fb", + "language": "Text", + "lines": 57, + "truncated": false, + "block": 9, + "row": 14552 + }, + { + "path": "collection.py", + "sha256": "a3e8fa4b7598dd81e2b55c2c19f82f8faafa65374e40b843b5b82c057ca86f46", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 7973 + }, + { + "path": "dataset.py", + "sha256": "66024bc1071d6a31e0e7d18d25f2c7059cbfafa6848ea2ee81393e8a0e9b5db7", + "language": "Python", + "lines": 709, + "truncated": false, + "block": 9, + "row": 12343 + }, + { + "path": "graphormer/collator.py", + "sha256": "db991868cb9a868450ded7236476d8694b8483579c9587b43d263d14dc1c3bad", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9578 + }, + { + "path": "graphormer/model.py", + "sha256": "a96f6f252cb7e5b92eaacda9886503dec2a01afaeb0944cf3226e27ec1dfb402", + "language": "Python", + "lines": 382, + "truncated": false, + "block": 9, + "row": 11770 + }, + { + "path": "models.py", + "sha256": "bb8a7236c52bab5fd1ea6d9c90afbba00caeed7946d78bbd00cd6ae8266585a3", + "language": "Python", + "lines": 1624, + "truncated": false, + "block": 9, + "row": 12583 + }, + { + "path": "ngnn_models.py", + "sha256": "3d831534692bf88ddce8f1deff5b2dc12b4554ca77329c519ee89dd07254891b", + "language": "Python", + "lines": 265, + "truncated": false, + "block": 9, + "row": 10605 + }, + { + "path": "ngnn_utils.py", + "sha256": "62e0e824a427c401f83d76513b7eb48cd794b368840abb1cfd6244ce8a31bfe3", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 9, + "row": 9420 + }, + { + "path": "preprocess.py", + "sha256": "f62ddfb9abc5448040b851d92ea671a9ec33508fa9625af58da2c83dd804a09f", + "language": "Python", + "lines": 586, + "truncated": false, + "block": 9, + "row": 12245 + }, + { + "path": "seal18_utils.py", + "sha256": "ee464f0a03f153d2b50b08137a55b978eec1d18eae682d8532d891b8d8e72933", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 9, + "row": 9519 + }, + { + "path": "timer_guard.py", + "sha256": "44de65bd691f162a2b3f85a1e9050de435ac50668166b8339fa84805236a355e", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8034 + }, + { + "path": "train.py", + "sha256": "39e0dc9bb18cff713da00c65b5bd54b2468f4b5a24978ebafec07a006950e1d5", + "language": "Python", + "lines": 1816, + "truncated": false, + "block": 9, + "row": 12611 + }, + { + "path": "train_citation2.sh", + "sha256": "ca27487c7bea5af973dcd262778ecfe0d7df1760eae315984d2480536348d39a", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 9, + "row": 14265 + }, + { + "path": "train_ppa.sh", + "sha256": "608df5e8bdf2ec7ea8a273c81eb8f9131bc9549c54d4fa85067a0a38413efb25", + "language": "Shell", + "lines": 38, + "truncated": false, + "block": 9, + "row": 14362 + }, + { + "path": "train_vessel.sh", + "sha256": "589602d3de1db7fffc5fe58544e35fd5b351dba4b7dd4d0caa9086336886b85b", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 9, + "row": 14277 + }, + { + "path": "utils.py", + "sha256": "3e1e10159852390672ac0c6e6fd586dd0f944b2e8764b813d98c22ccbe274c88", + "language": "Python", + "lines": 801, + "truncated": false, + "block": 9, + "row": 12312 + }, + { + "path": "wp_utils.py", + "sha256": "7bc90c59c98a42d5e3d7473988e2f86dfa58aaafaf5418e25b741627e1571ff6", + "language": "Python", + "lines": 541, + "truncated": false, + "block": 9, + "row": 12038 + } + ] +} \ No newline at end of file diff --git a/manifests/89/github.com__dbouget__validation_metrics_computation.json b/manifests/89/github.com__dbouget__validation_metrics_computation.json new file mode 100644 index 0000000000000000000000000000000000000000..cbdbd61b143300a1bc61f8b0a1857de13d243025 --- /dev/null +++ b/manifests/89/github.com__dbouget__validation_metrics_computation.json @@ -0,0 +1,390 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/dbouget/validation_metrics_computation", + "url": "https://github.com/dbouget/validation_metrics_computation", + "host": "github.com", + "commit": "22448bb0352984bfc04289954d0f175135e61267", + "license": "BSD-2-Clause", + "license_confirmed_by": "license file LICENSE.md", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.md", + "sha256": "ccdf3f37df568abc4e9e83f58f2ea59d2fc22663ee01d4e6d8723c36fe355c68", + "language": "License", + "lines": 25, + "truncated": false, + "block": 9, + "row": 2873 + }, + { + "path": "README.md", + "sha256": "da7b7af5d9311890acb1eac08c22aa22a6d619af21aecfd39a60a03637a8f61c", + "language": "Text", + "lines": 146, + "truncated": false, + "block": 9, + "row": 14639 + }, + { + "path": "__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "main.py", + "sha256": "b39f44bfa98e4df163c786989aade4503102613642155957533f2f0d66b32523", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7588 + }, + { + "path": "notebooks/compute_study_example.ipynb", + "sha256": "8452b31f546ea3dd56be190557c9c5f9062b4c6421156bdd9db4de7309674830", + "language": "Jupyter", + "lines": 104, + "truncated": false, + "block": 9, + "row": 2345 + }, + { + "path": "notebooks/compute_validation_example.ipynb", + "sha256": "3aa43f56a91c8c4818984eb8c9b97591c315f8ff1035ec95384b2916f4deb426", + "language": "Jupyter", + "lines": 113, + "truncated": false, + "block": 9, + "row": 2359 + }, + { + "path": "raidionicsval/Computation/__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "raidionicsval/Computation/dice_computation.py", + "sha256": "282bef092ebc5435630add9bd4111bf0573af9463fabe9c759424d82df4f8374", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7232 + }, + { + "path": "raidionicsval/Computation/dice_computation_instance.py", + "sha256": "a3627697985278926785b9bedb291588c5ae5eefe30c75a53b1dcaaad89802cc", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 8407 + }, + { + "path": "raidionicsval/Computation/medpy_metrics.py", + "sha256": "691960cee3a0dc7bfdf0e60ccc92aea1139d3cae678c834d098d10b4e8d3cabb", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 9, + "row": 9983 + }, + { + "path": "raidionicsval/Computation/standalone_computation.py", + "sha256": "5040a504206fe3ab7b377e96a629b009f8eddabb9a193bc4efa584a2048be86f", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 9, + "row": 10614 + }, + { + "path": "raidionicsval/Plotting/__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "raidionicsval/Plotting/agreement_plot.py", + "sha256": "161bd52e32c2c5e1a0b52b5f4edec5cc096987fe759d6ba545332cd9363a45f4", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7046 + }, + { + "path": "raidionicsval/Plotting/classification_plot.py", + "sha256": "989fe24552bf18e940b1def6fe488b294fe55838a8df68a3f657b4f26c3e21ff", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6787 + }, + { + "path": "raidionicsval/Plotting/confidence_intervals_plot.py", + "sha256": "117b9bf4db561c341d05bc49567086ef033f8f8017982028a1d127ef6158e9ed", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 8286 + }, + { + "path": "raidionicsval/Plotting/metric_versus_binned_boxplot.py", + "sha256": "e425f1e7eef4657e84697eafaa5c00cf3d20811e57b36fecd44bc44d19bc0bd4", + "language": "Python", + "lines": 144, + "truncated": false, + "block": 9, + "row": 10701 + }, + { + "path": "raidionicsval/Studies/AbstractStudy.py", + "sha256": "283fbd5091ac96d2c73b1b174500e4b48ab85c600c9eeeadb8c0735b7e9f4320", + "language": "Python", + "lines": 788, + "truncated": false, + "block": 9, + "row": 12502 + }, + { + "path": "raidionicsval/Studies/ClassificationStudy.py", + "sha256": "56ff55c662327b21456b792ba62c500b0fa83913f3a39e4c13f6cfa2ddcbad75", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6863 + }, + { + "path": "raidionicsval/Studies/SegmentationStudy.py", + "sha256": "ca0d82bd9e0c6d58f0f983f34e0d69ad85e9a3c1ba7372b3802e32115a74582f", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 9328 + }, + { + "path": "raidionicsval/Studies/__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "raidionicsval/Studies/study_connector.py", + "sha256": "09d5e47bf2de99df8878626f6c0e87ba7f8cac390ff9eabaf40f35b4635c8ae9", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6802 + }, + { + "path": "raidionicsval/Utils/PatientMetricsStructure.py", + "sha256": "88f1061ff85b6ca8844a61296fa951a0378bb55205cf82f29eeb1e2c83388fc7", + "language": "Python", + "lines": 556, + "truncated": false, + "block": 9, + "row": 12073 + }, + { + "path": "raidionicsval/Utils/__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "raidionicsval/Utils/io_converters.py", + "sha256": "c56a61bc8e005e1942b792999c97a2a526c8fc250f93afd712221bd1f707f7be", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 9, + "row": 9542 + }, + { + "path": "raidionicsval/Utils/latex_converter.py", + "sha256": "fa712031a7d7ba22e8816bfc4258bb7d38cbe09d1f4ccac412baa22d8796d9f2", + "language": "Python", + "lines": 232, + "truncated": false, + "block": 9, + "row": 11249 + }, + { + "path": "raidionicsval/Utils/resources.py", + "sha256": "45f8aff0a2207369cd00eb8d83d9029d1ea643e120f4e3506ae1f530cd2d5cc3", + "language": "Python", + "lines": 275, + "truncated": false, + "block": 9, + "row": 11584 + }, + { + "path": "raidionicsval/Validation/extra_metrics_computation.py", + "sha256": "3375527fa1c52b7e4084c6b617a919d13babde8bb7c18d70759019983687edf1", + "language": "Python", + "lines": 509, + "truncated": false, + "block": 9, + "row": 12137 + }, + { + "path": "raidionicsval/Validation/instance_segmentation_validation.py", + "sha256": "2ebc0d9c3cceefacc428d76386b755fb19558eb11a7d73f7aca2e019039bd558", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 11622 + }, + { + "path": "raidionicsval/Validation/kfold_model_validation.py", + "sha256": "b07cde138b52c57c5f7c26a97467faf70025edb4405d895da1c9d4498764fa59", + "language": "Python", + "lines": 598, + "truncated": false, + "block": 9, + "row": 12328 + }, + { + "path": "raidionicsval/Validation/kfold_model_validation_classification.py", + "sha256": "224d93dc87cc0b34607e31b5e7b3fc4a48978d467ee75ee3eb0af01595bf3357", + "language": "Python", + "lines": 341, + "truncated": false, + "block": 9, + "row": 11710 + }, + { + "path": "raidionicsval/Validation/validation_utilities.py", + "sha256": "230a89b9de7215f35a6b2ccaadeae37c1148b5d3f47f109668c9848109ca249e", + "language": "Python", + "lines": 357, + "truncated": false, + "block": 9, + "row": 11889 + }, + { + "path": "raidionicsval/Validation/validation_utilities_classification.py", + "sha256": "cd27327b998e156c782d9345e779864584b673f4bb6c29fdc07733fb55798c30", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 9, + "row": 10830 + }, + { + "path": "raidionicsval/__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "raidionicsval/__main__.py", + "sha256": "5b4ece66ccca77a2ebef79e8cecfb6028521878f48858ec6d4a704449f1d7964", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7349 + }, + { + "path": "raidionicsval/compute.py", + "sha256": "414a18a78096152982f399155ea7fe3588dfa9c8a118f35f2d1008f9a6237bd9", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 8013 + }, + { + "path": "tests/__init__.py", + "sha256": "225e50f404dd5fcc97a95c6d3ff9d8a94844c73c4f0bfaa4fd65d0ff88747b18", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6088 + }, + { + "path": "tests/conftest.py", + "sha256": "25d8e8c07d8901ac641490253a5618be12985df808e8b3dd06b60c657487c144", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6829 + }, + { + "path": "tests/download_resources.py", + "sha256": "2be51674a7a8b44bccdbbadbc3ee5f40f64afa25103f556d40392f059a288a8b", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 7244 + }, + { + "path": "tests/generic_tests/test_studies_pipeline.py", + "sha256": "49294a0990fdc02d4ad7d45338990d7f2f84ea9790237d8e1368982bc9d33b90", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 9254 + }, + { + "path": "tests/generic_tests/test_validation_pipeline.py", + "sha256": "5a60c59eb11d2534f275fc3c64357cb691741a866d6dceeedaa96fb9a7b9a04a", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 9, + "row": 10305 + }, + { + "path": "tests/generic_tests/test_validation_pipeline_advanced.py", + "sha256": "b498123b546fd7beb32a2be8076812612b238b00a3d02ce597a50ec7763b448c", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 10187 + }, + { + "path": "tests/local_docker_tests/test_docker_validation_pipeline.py", + "sha256": "51baaa1a7bad2f982c166e8d70b0ccf52fbe94914986082fcd0cfa8c777dac1b", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 9340 + } + ] +} \ No newline at end of file diff --git a/manifests/89/github.com__jespeols__predicting_mrs_xml_integrated_data.json b/manifests/89/github.com__jespeols__predicting_mrs_xml_integrated_data.json new file mode 100644 index 0000000000000000000000000000000000000000..955d0b6f04f95e5ad74120ff97acd0a0b5821ee5 --- /dev/null +++ b/manifests/89/github.com__jespeols__predicting_mrs_xml_integrated_data.json @@ -0,0 +1,102 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/jespeols/predicting_mrs_xml_integrated_data", + "url": "https://github.com/jespeols/predicting_mRS_xML_integrated_data", + "host": "github.com", + "commit": "6e5adc52e7fd25f6e09eccd0a6510f6569b87c57", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "512df160c3b4a7725b407e1814be5eb12ae1afb0078fbf822f28efb03751fa8f", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2801 + }, + { + "path": "README.md", + "sha256": "4d2efa6ab551dc681bfcb825dade3655060d1d9afceb493c2e74468f14f8fec4", + "language": "Text", + "lines": 56, + "truncated": false, + "block": 9, + "row": 14577 + }, + { + "path": "code/MLPClassifier.py", + "sha256": "501b6616b0566e43787fcbfd3f592657dbd189c102fb2615cfcac56363df4293", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7340 + }, + { + "path": "code/ModelComparer.py", + "sha256": "e9a231417a9e6115f85a9ab58c4ef9ddb50c2db108010a23a35d504dc3c91625", + "language": "Python", + "lines": 848, + "truncated": false, + "block": 9, + "row": 12240 + }, + { + "path": "code/main.py", + "sha256": "af82b9166d7ab795c7171a232cacfbd1704180bd29dc10b83dc194d631848d39", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7403 + }, + { + "path": "code/make_figures.ipynb", + "sha256": "50806654c55c3f86adb3371f8b7b6bb4290982c8c583d1f160a77b92cd681590", + "language": "Jupyter", + "lines": 223, + "truncated": false, + "block": 9, + "row": 2432 + }, + { + "path": "code/make_variable_tables.R", + "sha256": "78ea4f0891fad657841bdcb1d745205ddde7182790775715d313a70332be207b", + "language": "R", + "lines": 399, + "truncated": false, + "block": 9, + "row": 13618 + }, + { + "path": "manuscript/abstract.qmd", + "sha256": "f075f6829a939e05d1931c0f7a281d2e9132cd00536006aba7afae62f0127f65", + "language": "Quarto", + "lines": 1, + "truncated": false, + "block": 9, + "row": 12714 + }, + { + "path": "manuscript/manuscript.qmd", + "sha256": "fb07c7fbcf2d7a29530bb48a555c3f8ab237aa91a150a80be559f55630291919", + "language": "Quarto", + "lines": 218, + "truncated": false, + "block": 9, + "row": 12743 + }, + { + "path": "manuscript/supplement.qmd", + "sha256": "3a1f48eab9a02ff4dff9ebf884dca4178fb872d3578685163dcd7a022b9e13b1", + "language": "Quarto", + "lines": 202, + "truncated": false, + "block": 9, + "row": 12741 + } + ] +} \ No newline at end of file diff --git a/manifests/8a/github.com__monarch-initiative__aurelian.json b/manifests/8a/github.com__monarch-initiative__aurelian.json new file mode 100644 index 0000000000000000000000000000000000000000..2f49ccace0874b36e74cc3cd3621768ed58ee08c --- /dev/null +++ b/manifests/8a/github.com__monarch-initiative__aurelian.json @@ -0,0 +1,2325 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/monarch-initiative/aurelian", + "url": "https://github.com/monarch-initiative/aurelian", + "host": "github.com", + "commit": "d9464b58787cbe40285799208c31640b600fce7e", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "141e91a5451f6d478a4b88285abbe9a754263adcb2c2b322341b183cc94b4f70", + "language": "License", + "lines": 22, + "truncated": false, + "block": 9, + "row": 2846 + }, + { + "path": "README.md", + "sha256": "a0c330d1be558d6c8002a3e15520640373ec451f65771b87bfc0c8af4c642407", + "language": "Text", + "lines": 103, + "truncated": false, + "block": 9, + "row": 14566 + }, + { + "path": "batch_extract_gpt5.py", + "sha256": "41b27ecdca6a9dbb2235bc8f4009dc618ae55ff0a3d9449a8088fb0304dcc2eb", + "language": "Python", + "lines": 211, + "truncated": false, + "block": 9, + "row": 10192 + }, + { + "path": "demo_d4d.py", + "sha256": "18a45b6dd34687fe5441ace5968fd42a451e56a648137bec051261b5cd8475e6", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8244 + }, + { + "path": "docs/examples/GO-CAM-Drawings.ipynb", + "sha256": "67c7b80759ef49050144cf9e06a8a69b1ae652234e57733a4f920e0e8fd96262", + "language": "Jupyter", + "lines": 180, + "truncated": false, + "block": 9, + "row": 2348 + }, + { + "path": "docs/examples/GO-CAM-Reviews.ipynb", + "sha256": "296be0134635f8250518106b487fe1bb2d7a172906a157eea3710a212860f156", + "language": "Jupyter", + "lines": 146, + "truncated": false, + "block": 9, + "row": 2283 + }, + { + "path": "docs/examples/PaperQA-Example.ipynb", + "sha256": "db4bd1d4caaf1bfce7ad3bb547c6c4f5df1c90c8077bf52fa1a46e19812d99c1", + "language": "Jupyter", + "lines": 183, + "truncated": false, + "block": 9, + "row": 2390 + }, + { + "path": "docs/examples/Perplexity-Example.ipynb", + "sha256": "12c70bf91e774cedf742ea41bd6aa7e100ab9d9a84a6c3c7f5535fde5ad528ce", + "language": "Jupyter", + "lines": 102, + "truncated": false, + "block": 9, + "row": 2249 + }, + { + "path": "docs/examples/Terpenoids.ipynb", + "sha256": "2c3404ef838d80d395d54e5ef7eea0a2ea5da39402c622864ea416f782e5d2fd", + "language": "Jupyter", + "lines": 175, + "truncated": false, + "block": 9, + "row": 2352 + }, + { + "path": "docs/examples/TranscriptionFactors.ipynb", + "sha256": "b283fdf0b484bd5ef3bfd607220721833243c9ebd66d48c0b3984cc0a84c214b", + "language": "Jupyter", + "lines": 128, + "truncated": false, + "block": 9, + "row": 2269 + }, + { + "path": "download_from_sheet.py", + "sha256": "8cdd94e34a600c8e3a82abfcfeb08e64e620964494d10ad9fb47ff54df7c46f8", + "language": "Python", + "lines": 218, + "truncated": false, + "block": 9, + "row": 10241 + }, + { + "path": "in-progress/github/PullRequest.ipynb", + "sha256": "00d725eab0cc33dcf94c057a80d44b63932d394a5f47d7f690b6b884873b5a4e", + "language": "Jupyter", + "lines": 49, + "truncated": false, + "block": 9, + "row": 2194 + }, + { + "path": "notebooks/D4D_Agent_Demo.ipynb", + "sha256": "30f485256d33b40e5b7f694b62a10c7afa1cf37c9917b04b0af63576018da129", + "language": "Jupyter", + "lines": 13, + "truncated": false, + "block": 9, + "row": 2185 + }, + { + "path": "scripts/gen_ref_pages.py", + "sha256": "85c3610af29b284783b534fe7c2638727f6ea6b8677eabb1f71df7235b8d039c", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 9, + "row": 7183 + }, + { + "path": "src/aurelian/__init__.py", + "sha256": "d40c7b0b213beed042f037545490c66988ca8d2264270a199e1a52ab7fe1c7f6", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 9, + "row": 6476 + }, + { + "path": "src/aurelian/agents/aggregator/__init__.py", + "sha256": "491f75429fca08250a1ec7ef0c4ce68a2d6616c6dbca504a7d659f510f1639d0", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6327 + }, + { + "path": "src/aurelian/agents/aggregator/aggregator_config.py", + "sha256": "081448e595811d6e43fff4a0b0783428e1431ab7c1eaa1659787114165f22cd9", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6714 + }, + { + "path": "src/aurelian/agents/amigo/__init__.py", + "sha256": "87af8fdb8c7ddba1d64db6f9a4241b6aceaa51c4005c461ebc203e6d35537482", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6345 + }, + { + "path": "src/aurelian/agents/amigo/amigo_agent.py", + "sha256": "9c23a569747468b0439940eddf70268a629a556374f9b82cc0239d20b166aae6", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 9, + "row": 8352 + }, + { + "path": "src/aurelian/agents/amigo/amigo_config.py", + "sha256": "9557b0bc9f1b1b22d47e496c8bcfb8c1e81d484eaa45c2804b3a5a516141c204", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 7953 + }, + { + "path": "src/aurelian/agents/amigo/amigo_evals.py", + "sha256": "b98f95cf73ab8e750962ae7df20b82265fdd603b9b0ae62542b60342c904b127", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 8085 + }, + { + "path": "src/aurelian/agents/amigo/amigo_gradio.py", + "sha256": "518256d99743409cfbef064d7adc5e8d6108e6dcf7f65551597670407268be68", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7606 + }, + { + "path": "src/aurelian/agents/amigo/amigo_mcp.py", + "sha256": "6f22cc0e0ba3fe8b155794389b5169fc8d667a0666dbc4f3577615a22e6a6b54", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 9, + "row": 8979 + }, + { + "path": "src/aurelian/agents/amigo/amigo_tools.py", + "sha256": "ba94e38f0e2b28215edea5feeb7dfef669506665c670db14f0857b65df5726f1", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 9, + "row": 9685 + }, + { + "path": "src/aurelian/agents/biblio/__init__.py", + "sha256": "c41bb08d1623c9645b00131a6bb35a3302549920e3d0001343fe793b2fc58ad0", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 9, + "row": 6921 + }, + { + "path": "src/aurelian/agents/biblio/biblio_agent.py", + "sha256": "ee2706e93cc2af5bcd8243078eeebad8871e4503ac12de572e48a99f26f11e5c", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 8937 + }, + { + "path": "src/aurelian/agents/biblio/biblio_config.py", + "sha256": "2b672bb6e588b2fccb6a80f46c836bc7bfd53ee729e10c1b7f08fc0c49ffd3d1", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7299 + }, + { + "path": "src/aurelian/agents/biblio/biblio_gradio.py", + "sha256": "e184ea627e09c34317dbdb9d67888224ff985ca97dc9074f030a2e3d1aff0752", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 7836 + }, + { + "path": "src/aurelian/agents/biblio/biblio_mcp.py", + "sha256": "cd9a511d373bb5501c04bd7dd2c0d23dc9afa2eb3bbe3631d12d0e0fcfaae081", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 9, + "row": 8609 + }, + { + "path": "src/aurelian/agents/biblio/biblio_tools.py", + "sha256": "b538a1a733938cb070bcc9ba40d007b146fdc96753e03ce23adeeddd759ed3fa", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 9441 + }, + { + "path": "src/aurelian/agents/biblio_agent.py", + "sha256": "d14be1e8de8041dbdafb83608ce9451d74053ee1302f202a5151ad464a249fe5", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7282 + }, + { + "path": "src/aurelian/agents/checklist/__init__.py", + "sha256": "64def4b272380bcef52beefaa1108c5375d93d897fe25287e15ccf531f6dbc28", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7099 + }, + { + "path": "src/aurelian/agents/checklist/checklist_agent.py", + "sha256": "1bb3692c34aa2afab3de6b62d6df1201c7859d71e4a349278e8b6ac756293106", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8390 + }, + { + "path": "src/aurelian/agents/checklist/checklist_config.py", + "sha256": "f15fdfc168f774f1322667257b49ec71fbdcc5d5058801ac1354f5ec69c53489", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 6930 + }, + { + "path": "src/aurelian/agents/checklist/checklist_gradio.py", + "sha256": "50ec0bec10a3c91b2795d3fedd1561cf142c4462c2e50ced63c8ae031aa322c6", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 7898 + }, + { + "path": "src/aurelian/agents/checklist/checklist_mcp.py", + "sha256": "710a3f5663ff53e03471010704cae0b7981822bde79151532effbcb9c4b40f6d", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8059 + }, + { + "path": "src/aurelian/agents/checklist/checklist_tools.py", + "sha256": "76043639305bcf7ad23c38d06a11ce7a20cb7b3e3ba02b707a454dd6b20e9dc1", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 9, + "row": 9071 + }, + { + "path": "src/aurelian/agents/checklist_agent.py", + "sha256": "d8ad65d9cb5bf2821618ea8cb9605fb8cd16119d296b606241479f5d602f9c92", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7233 + }, + { + "path": "src/aurelian/agents/chemistry/__init__.py", + "sha256": "fdad22401e74a39705fadf9223912468ff2809e0d673640abc9d26eb6f13ca9f", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6310 + }, + { + "path": "src/aurelian/agents/chemistry/chemistry_agent.py", + "sha256": "6a1f1b6bcf962f28bee432239917d15116e689e9dbc32c7f8754d7911d7aa3df", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7577 + }, + { + "path": "src/aurelian/agents/chemistry/chemistry_config.py", + "sha256": "af7e3ca89c01a6fa7a43c31b9c0dce38e4818e1163f89ff927af0ea4a8138a31", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 7831 + }, + { + "path": "src/aurelian/agents/chemistry/chemistry_evals.py", + "sha256": "b3f7a5443b2395ef1f36b90be1ce1477636b167a02337828264730391862fb86", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8296 + }, + { + "path": "src/aurelian/agents/chemistry/chemistry_gradio.py", + "sha256": "dad17a1e14616c92bfdf341fc9d067d24c0500989041c1f37af6bcb5ac780c43", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 7536 + }, + { + "path": "src/aurelian/agents/chemistry/chemistry_mcp.py", + "sha256": "652f255cc8c2c23eb4442bf8b7a045c6a534ba2886c4b1615a81bdbcd6ff2ddd", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 8453 + }, + { + "path": "src/aurelian/agents/chemistry/chemistry_tools.py", + "sha256": "b09d0558cab0bdfd5c39dd5712674e91589863b16159467fcf4ccc0fc132437d", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 8759 + }, + { + "path": "src/aurelian/agents/chemistry/image_agent.py", + "sha256": "4dab72e4c61b860ed73f3a4681f31ebbb2e5e83e5ffe0ac29463c5f4cddba131", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6701 + }, + { + "path": "src/aurelian/agents/d4d/__init__.py", + "sha256": "87b8e68339aeff3114fb91e97a3ac3b345ac8a0ab8929bdd34b0b7b3e3075ee2", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6742 + }, + { + "path": "src/aurelian/agents/d4d/d4d_agent.py", + "sha256": "e8ee8858ccd5c5b2e1512bd322c2ff4e23041c9bf789d3549a6b436eca454d3e", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 8688 + }, + { + "path": "src/aurelian/agents/d4d/d4d_config.py", + "sha256": "bd0cf5ca6d8d0e29b67105788053174c370011e839440541916bd521da3b08da", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7491 + }, + { + "path": "src/aurelian/agents/d4d/d4d_gradio.py", + "sha256": "8095c8996a90bfd3c03ca5657b185dbd7a93703a5059b122d712d6546225cbd4", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 7782 + }, + { + "path": "src/aurelian/agents/d4d/d4d_mcp.py", + "sha256": "42346a15de268806df170ce8b3989d1c0fb07dd379f9d8e90f63add31a206f9f", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 7754 + }, + { + "path": "src/aurelian/agents/d4d/d4d_tools.py", + "sha256": "2b01fb269ee6a97f8876e5da46008c109b15812806379c9b5105662d9d467c34", + "language": "Python", + "lines": 281, + "truncated": false, + "block": 9, + "row": 10598 + }, + { + "path": "src/aurelian/agents/d4d_agent.py", + "sha256": "8434b94558ac3dc2b30d7db4daf633cf9e24c86675fcbf157c10837d73e5a4f9", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 7829 + }, + { + "path": "src/aurelian/agents/diagnosis/__init__.py", + "sha256": "1e15b83448ebf19a3a2eac62ab4016de9cc666ed4df31124740774106ffb7da9", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6800 + }, + { + "path": "src/aurelian/agents/diagnosis/diagnosis_agent.py", + "sha256": "fa727b830659e8de88f80eb2f52571aea295f7c6fe0e0ae4004f368e9899db4b", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 8134 + }, + { + "path": "src/aurelian/agents/diagnosis/diagnosis_config.py", + "sha256": "4c2a09f6d3e65d2d20bd7826ce24aa00c1ca5dd978f0c8390057a34bfd16bf1a", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7555 + }, + { + "path": "src/aurelian/agents/diagnosis/diagnosis_evals.py", + "sha256": "14be36bab34802c5a8f623119a9ca796bbcc60b9dacec0bdb4c3dd3e6f3a246f", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8279 + }, + { + "path": "src/aurelian/agents/diagnosis/diagnosis_gradio.py", + "sha256": "59efd9c61c6696f73172f5667f636e7e599e1d521898327f2efacee212f563d5", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7704 + }, + { + "path": "src/aurelian/agents/diagnosis/diagnosis_mcp.py", + "sha256": "b6f9185cda5346fe2a18afa7391bb630ec029fa0be84dbb575dbb5af10fdc493", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 9, + "row": 8877 + }, + { + "path": "src/aurelian/agents/diagnosis/diagnosis_tools.py", + "sha256": "804f30cd2ebd79b652a13fe94c022f68a00f0ff49140adfa6d156140be20558f", + "language": "Python", + "lines": 204, + "truncated": false, + "block": 9, + "row": 9815 + }, + { + "path": "src/aurelian/agents/diagnosis_agent.py", + "sha256": "ec2316c9b1f28011c462cfa9a8a2f5a765077a5f904c990eac8910636e95c5ce", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 6908 + }, + { + "path": "src/aurelian/agents/draw/__init__.py", + "sha256": "b08a865bcea5fe3ccee679bd13c90073b0e4b61e09a8715e472a10ec64ee9ce5", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6132 + }, + { + "path": "src/aurelian/agents/draw/draw_agent.py", + "sha256": "3acc766d6c2a2d041c5b99bed4e4c693e5de46803aaab759205f0b33ee370b8f", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7219 + }, + { + "path": "src/aurelian/agents/draw/draw_config.py", + "sha256": "3eee1d59199249651f2da0bf78bf5cfaeee71700830217e9ff9b951c52e2602a", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 6720 + }, + { + "path": "src/aurelian/agents/draw/draw_gradio.py", + "sha256": "5a87c3d0040cbebf232c9640096827f803aadae0cb3b3fdb8f8e9cf0ea22dbea", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 7439 + }, + { + "path": "src/aurelian/agents/draw/draw_mcp.py", + "sha256": "5818ea991ed6f2a7464bc8ed39fcca3085760468970812b5f4785558860bccda", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 9, + "row": 8110 + }, + { + "path": "src/aurelian/agents/draw/draw_tools.py", + "sha256": "8558c73cfc4db1e6cd5100d396c5e55589ecaed237c9f020db679541fcf3276c", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 8569 + }, + { + "path": "src/aurelian/agents/draw/judge_agent.py", + "sha256": "4b27134fbefc08aefe2f62b96c8a83d8379117312ad0818e9a1ed6060507bee6", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6662 + }, + { + "path": "src/aurelian/agents/filesystem/filesystem_config.py", + "sha256": "973ec78c2bd6ca944ff910fd62973439abea2539bfa7550b1fbbe6c50f7fb278", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6845 + }, + { + "path": "src/aurelian/agents/filesystem/filesystem_gradio.py", + "sha256": "7a8ccc4674f8e33a25cdd187ec4d1b901482e9e15bbffe9a54b17e3d7f65a943", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7497 + }, + { + "path": "src/aurelian/agents/filesystem/filesystem_mcp.py", + "sha256": "bcb8d1a3e95783366f1775d899a9ed1026e952e2078ea8698b1f629da6f98084", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 9, + "row": 7956 + }, + { + "path": "src/aurelian/agents/filesystem/filesystem_tools.py", + "sha256": "ef2ad8a3cb856c72d2d11c80e4cad915fa628b2d676cacb3dfd95f865f09c839", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 8182 + }, + { + "path": "src/aurelian/agents/gene/__init__.py", + "sha256": "dca78d205bec5c9ff99c95d89ac9618af10fcace5ff20fcf86e777117341f08c", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6130 + }, + { + "path": "src/aurelian/agents/gene/gene_config.py", + "sha256": "ada32e288d243e7cb66a3f343009d603d6451cf47fab61d0a430030ffa9fcdd7", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 9, + "row": 6693 + }, + { + "path": "src/aurelian/agents/github/github_agent.py", + "sha256": "d4594a316434a866c1e6016cc618fb322b146f3cbec4bbbfa91072ee2828990d", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 9, + "row": 8125 + }, + { + "path": "src/aurelian/agents/github/github_cli.py", + "sha256": "cb41c76ee97addcd64efe8ea5e0c4e4ad039346fef7b406fc6d1d6ee649a1f6d", + "language": "Python", + "lines": 248, + "truncated": false, + "block": 9, + "row": 10651 + }, + { + "path": "src/aurelian/agents/github/github_config.py", + "sha256": "80076624c76476a7c83bf6057a0be5a9600ca09a415b6ef479cb92d2c06333f9", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6696 + }, + { + "path": "src/aurelian/agents/github/github_gradio.py", + "sha256": "080852f088123ee236dd256f82dd27d06fb9785278a1ba14bc596192c5db013e", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 9, + "row": 9607 + }, + { + "path": "src/aurelian/agents/github/github_mcp.py", + "sha256": "7d64afccdd54b84dbfadc05ea1fc6b43620c416854514527687eed9c1c73c1fc", + "language": "Python", + "lines": 252, + "truncated": false, + "block": 9, + "row": 10460 + }, + { + "path": "src/aurelian/agents/github/github_tools.py", + "sha256": "811c8c0374c451beee2f478011f070f0b399d50a40a510b809e2ff094ec1b78a", + "language": "Python", + "lines": 408, + "truncated": false, + "block": 9, + "row": 11153 + }, + { + "path": "src/aurelian/agents/goann/__init__.py", + "sha256": "6d152c566fbbe7600bc399056287528b08549e9d1947b0e4ad372dac5718c421", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 9, + "row": 6477 + }, + { + "path": "src/aurelian/agents/goann/goann_agent.py", + "sha256": "db4a9376e248696782f24f52decbdc9b3d75c10c52b71a24af731df81ac354fe", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8785 + }, + { + "path": "src/aurelian/agents/goann/goann_config.py", + "sha256": "c9f81436303fed858c835e4f2484501cb83ea640b4027d99bf20f615e247c543", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8253 + }, + { + "path": "src/aurelian/agents/goann/goann_evals.py", + "sha256": "7e80e2917d0a05871f05a99fd06e5459c26cb400db36b441eeafd363b4e845d7", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 8936 + }, + { + "path": "src/aurelian/agents/goann/goann_gradio.py", + "sha256": "b3f9b1e10876ff94a05dd47736e63f26bd61dfcbd38f3ffff93bf4ca4f102d4d", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 7925 + }, + { + "path": "src/aurelian/agents/goann/goann_tools.py", + "sha256": "9b99cce359db1f8e4867cf815c2696397f7bd23d2ca58c23409845b36dc4bc0b", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7947 + }, + { + "path": "src/aurelian/agents/gocam/__init__.py", + "sha256": "0ae5ebc91f6196b0927650d272da8ab28ac73bb8dbac8d9e181c1ca010d81096", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7240 + }, + { + "path": "src/aurelian/agents/gocam/gocam_agent.py", + "sha256": "e5e9bf952eb80f6786fecae5194e01ffbe854f1dcd0013c08264eb61c3ebd5ad", + "language": "Python", + "lines": 243, + "truncated": false, + "block": 9, + "row": 10720 + }, + { + "path": "src/aurelian/agents/gocam/gocam_config.py", + "sha256": "314ee3461ae4074e64453fabb8f0e83e91cc3c50a7db2d8e77a075dd7223e91d", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8229 + }, + { + "path": "src/aurelian/agents/gocam/gocam_curator_agent.py", + "sha256": "e0e2b73e8342340de954b57acaaed19b464ded8439b68740be326f63300f3eb6", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7476 + }, + { + "path": "src/aurelian/agents/gocam/gocam_evals.py", + "sha256": "c7d2b4e278a0b98d8156d3c0f7d89f8f781bedd225bb95edfd8129aa93dc932e", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 7858 + }, + { + "path": "src/aurelian/agents/gocam/gocam_gradio.py", + "sha256": "021d559e5192615ccb3d07a5e526d9f9136c23f4118343c906de9518620e39fa", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 9, + "row": 8575 + }, + { + "path": "src/aurelian/agents/gocam/gocam_mcp.py", + "sha256": "4be293e46b902adcefab7dd07a69b55b08378e197ae069c66e273fb40e3e5e84", + "language": "Python", + "lines": 224, + "truncated": false, + "block": 9, + "row": 9805 + }, + { + "path": "src/aurelian/agents/gocam/gocam_tools.py", + "sha256": "cf1a093235dc11065c6bd1934b1668edb00c5e1f56218147373f473fdecedf76", + "language": "Python", + "lines": 293, + "truncated": false, + "block": 9, + "row": 10766 + }, + { + "path": "src/aurelian/agents/knowledge_agent/__init__.py", + "sha256": "063f4ffa300d065b40c1cf661c0a4e7fd828a24d68bcf5ab39a7b7bb71ef7121", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6138 + }, + { + "path": "src/aurelian/agents/knowledge_agent/evals/__init__.py", + "sha256": "4cbac1a49b316af424046ebb51f053bd7b1531888fc48eba3e6601e7bbd00d5b", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6117 + }, + { + "path": "src/aurelian/agents/knowledge_agent/evals/chebi_evals.py", + "sha256": "509602748574441b1669c59d11da185b65ced839424f1983165dd9548929ba62", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 9771 + }, + { + "path": "src/aurelian/agents/knowledge_agent/evals/cl_evals.py", + "sha256": "a8ffb9520128df43b5280c7362e23d1120dc1dc8975a7471ca7a1a44a0085b15", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 9134 + }, + { + "path": "src/aurelian/agents/knowledge_agent/evals/go_bp_evals.py", + "sha256": "cd05fa5139aa49d0eb4b3b472af501f9ac1a5654b09ac8769cb509cb53231819", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 9404 + }, + { + "path": "src/aurelian/agents/knowledge_agent/evals/go_cc_evals.py", + "sha256": "4ec2d6ddc710d73fbb33d0653b027a28d36f4c7509b1034926fa392cd7181af5", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 9237 + }, + { + "path": "src/aurelian/agents/knowledge_agent/evals/go_mf_evals.py", + "sha256": "9fbebb1f258315400afc8b43af54809fa8edbcacebd74dc75114594d4cda0747", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 9, + "row": 9260 + }, + { + "path": "src/aurelian/agents/knowledge_agent/evals/mondo_simple/__init__.py", + "sha256": "b233514f5fa724b9c1cba78121da0d84f182f63558aa9c011ae7a358ee8d410a", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6122 + }, + { + "path": "src/aurelian/agents/knowledge_agent/evals/mondo_simple/hpo_evals.py", + "sha256": "be50dbdf2f83ee270dc76db83b2f3f4f9e9d1e1c8d8ba6236f6503fdc9bd1073", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7185 + }, + { + "path": "src/aurelian/agents/knowledge_agent/evals/mondo_simple/mondo_evals.py", + "sha256": "a8bea5ddc65a89d92ef86ffaca08f8d306ff66454367d486ffa1ebccaf8c3571", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 9, + "row": 10518 + }, + { + "path": "src/aurelian/agents/knowledge_agent/evals/mop_evals.py", + "sha256": "b1bfd7d6197adaddc0c270d67345629ce955da842d88e05361c26652c1b46cd6", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 9016 + }, + { + "path": "src/aurelian/agents/knowledge_agent/evals/ncbitaxon_evals.py", + "sha256": "27e80e5b2762fe4ca63978781c2887c18602aeba6c26ba7408f60ccddbbdae7a", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 9145 + }, + { + "path": "src/aurelian/agents/knowledge_agent/evals/pr_evals.py", + "sha256": "68d1e8d30f2c63f40ab6ee0b12907ec435401b448cf20e790c6c3fb6a742a1bc", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 9177 + }, + { + "path": "src/aurelian/agents/knowledge_agent/evals/so_evals.py", + "sha256": "37d105b29c7fee6629ab04a16af0f8204223a00f30042bc5101a69976ea7e176", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 9199 + }, + { + "path": "src/aurelian/agents/knowledge_agent/evals/uberon_evals.py", + "sha256": "73065900bad21560433167b9f28fe54882bd45f717b7828c21b5cdee04ef4a24", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 8818 + }, + { + "path": "src/aurelian/agents/knowledge_agent/knowledge_agent_agent.py", + "sha256": "19fe91da49361d863ae88fc2c3c338b6bd9b41226ac75bc6543b5e14b297d669", + "language": "Python", + "lines": 243, + "truncated": false, + "block": 9, + "row": 10797 + }, + { + "path": "src/aurelian/agents/knowledge_agent/knowledge_agent_config.py", + "sha256": "55416e9c8ab3103fbc61efb1017f175692e829e334ce1e54995632f271b93466", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7949 + }, + { + "path": "src/aurelian/agents/knowledge_agent/knowledge_agent_evals.py", + "sha256": "2d9ca5ba8e19ce320e5d0fe204d72856579ae70839faaafdb5c4b250c2bae0fb", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 9, + "row": 9466 + }, + { + "path": "src/aurelian/agents/knowledge_agent/knowledge_agent_gradio.py", + "sha256": "43de58b412976f953bb4e21ef8e21d1f45251e0b1c6612acc8c6d3d1377addd9", + "language": "Python", + "lines": 302, + "truncated": false, + "block": 9, + "row": 11048 + }, + { + "path": "src/aurelian/agents/knowledge_agent/knowledge_agent_models.py", + "sha256": "2d53e40e0998bc016681ede0c91b979e582134e193cc4174f5ebe2965585bb7c", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 8449 + }, + { + "path": "src/aurelian/agents/knowledge_agent/knowledge_agent_tools.py", + "sha256": "3fc6d983b22fe050d084f6cf12dbf63091b27344e7fc77ee5f0aef30dd148214", + "language": "Python", + "lines": 390, + "truncated": false, + "block": 9, + "row": 11495 + }, + { + "path": "src/aurelian/agents/linkml/linkml_agent.py", + "sha256": "26161f83ec4c1a1963d95a9aa9ea936443a14dc0641b34e3e5a4a7f78f2946d6", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 8042 + }, + { + "path": "src/aurelian/agents/linkml/linkml_config.py", + "sha256": "5483cf5fb1f97866f0ed1c7e6320e8ace6151d9cf54d0c6a16d14ac05b661708", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7474 + }, + { + "path": "src/aurelian/agents/linkml/linkml_evals.py", + "sha256": "a1d43aba75e1a1b053ea4aea615b5dc75265f75c61e26e9abc193bf819671ef7", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 7987 + }, + { + "path": "src/aurelian/agents/linkml/linkml_gradio.py", + "sha256": "5da68140465325d5b61dd10d6ecd8b8e51e371f8c0af6fac7ad15e3c92a9e9b8", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7347 + }, + { + "path": "src/aurelian/agents/linkml/linkml_mcp.py", + "sha256": "f02b6d0ad7e216b454e055f8f898d7bc3067a4c627cf7a0e56f56e3f63a53231", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 9, + "row": 9354 + }, + { + "path": "src/aurelian/agents/linkml/linkml_tools.py", + "sha256": "fb2e77b3530825d2eca89b2d645fbcb79a1c8a01ce2ed5d30f199122163bbb27", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 9, + "row": 8919 + }, + { + "path": "src/aurelian/agents/literature/__init__.py", + "sha256": "f0463f8f82567f931ba30bfa9b3504e932e9921c2b6cd652293f8d107eb92a95", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6355 + }, + { + "path": "src/aurelian/agents/literature/literature_agent.py", + "sha256": "2c1f5160e2b86f369051fb3c0faae62d0fb5342c0d00f485b1fbbf8426387f4d", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 9, + "row": 8077 + }, + { + "path": "src/aurelian/agents/literature/literature_config.py", + "sha256": "b83ca1a274d274c3f92f57578081a183095a1dec913f18e9550926b7a931edc1", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7044 + }, + { + "path": "src/aurelian/agents/literature/literature_gradio.py", + "sha256": "e4601e7f87c1f0681f3a8930a4bd35e8c229c88676d207dbe6c9d9256185fa4f", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7617 + }, + { + "path": "src/aurelian/agents/literature/literature_mcp.py", + "sha256": "7d5056ed583ca56daf46af113e2a3a2ed93fc5ee0a242b3f50243396c2c3ac9a", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 9, + "row": 9042 + }, + { + "path": "src/aurelian/agents/literature/literature_tools.py", + "sha256": "bd931357e577c69a384af9043e7b8902c6efea0182c1019b72f2d6e9e73a8d7f", + "language": "Python", + "lines": 182, + "truncated": false, + "block": 9, + "row": 9786 + }, + { + "path": "src/aurelian/agents/monarch/monarch_agent.py", + "sha256": "9ef7b49b70438fdfd0c1b501cb81ede65b555c4968d47fc787794f81ce37ac4e", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7769 + }, + { + "path": "src/aurelian/agents/monarch/monarch_config.py", + "sha256": "de0e4e5e6327b87d1bcb521963d60b9f858f47a86be17282adeab548118ccd7a", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7425 + }, + { + "path": "src/aurelian/agents/monarch/monarch_gradio.py", + "sha256": "186e66e26f31e1cac5c0fd9ae73f2cf7b9f2946ea0c2e4571daed13bcd8f3ef6", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7525 + }, + { + "path": "src/aurelian/agents/monarch/monarch_mcp.py", + "sha256": "53e2b45e5a5120c3e5026e5d29092a7a67a9cfe0de9829852cc2562c0495d002", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7777 + }, + { + "path": "src/aurelian/agents/monarch/monarch_tools.py", + "sha256": "cfaa217b8c333bcbc155257fdb71523f02f314d845ae4e8791dcbb1423a6868b", + "language": "Python", + "lines": 112, + "truncated": false, + "block": 9, + "row": 8838 + }, + { + "path": "src/aurelian/agents/oak/oak_config.py", + "sha256": "19cf7f79d96464a17ef37efbc70c764222315471a21c0db158f8185721beb6f1", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6808 + }, + { + "path": "src/aurelian/agents/oak/oak_gradio.py", + "sha256": "fb2f7d32810e45e6b6b0b22f72f1046de283a23c66d08edb5f3cd9928487bbfb", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 7632 + }, + { + "path": "src/aurelian/agents/ontology_mapper/__init__.py", + "sha256": "e520947a3d54c81252b92c19acd1c73bcaeb4cf125ba9fee7ce0a52a89bafeff", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 6781 + }, + { + "path": "src/aurelian/agents/ontology_mapper/ontology_mapper_agent.py", + "sha256": "e580f23c0ff0f39aab9f1b6af1dbbb67f5f65d958757b4cf68ec8019f9de5e77", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 9415 + }, + { + "path": "src/aurelian/agents/ontology_mapper/ontology_mapper_config.py", + "sha256": "8aa273b99e8cec14acd2a1a079a879bbb4c73aeb19dd58ef1fc949e888988121", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 7612 + }, + { + "path": "src/aurelian/agents/ontology_mapper/ontology_mapper_evals.py", + "sha256": "ea4ca6a53f0b579ef4ad1a3381e048c84759ddd0df4461f6a37c78c7617fffd4", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 9, + "row": 8856 + }, + { + "path": "src/aurelian/agents/ontology_mapper/ontology_mapper_gradio.py", + "sha256": "9f39303ef2b793a4b37bca0d4b647ccf89365de5e3e0b536c235781bf267f847", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 7763 + }, + { + "path": "src/aurelian/agents/ontology_mapper/ontology_mapper_mcp.py", + "sha256": "6275c2294d98cf2fd13ea11b6bc8493d6c2d6f51f4ed6a3ece5658fa79cababc", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8043 + }, + { + "path": "src/aurelian/agents/ontology_mapper/ontology_mapper_tools.py", + "sha256": "19b50067cac6a8fb9ab3a21ee1ab2298efd2932961b8822c0136adfb3ca11c75", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 9, + "row": 9855 + }, + { + "path": "src/aurelian/agents/ontology_mapper/query_preprocessor.py", + "sha256": "4f2f49a513b8c2a16a3fd7c725cea024f0f66dd4170a7ec1cce1b92d8b3f153d", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 9, + "row": 9640 + }, + { + "path": "src/aurelian/agents/paperqa/__init__.py", + "sha256": "0df7dfddfcb1f4f7a87aa0380dcbf213f9685be5177a060cdbcd5a96db702ef2", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6732 + }, + { + "path": "src/aurelian/agents/paperqa/paperqa_agent.py", + "sha256": "1403e01d5796eb78d3d3bb6b8d5d87ccdaaaece8af443961a762a7e7429be46b", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 8318 + }, + { + "path": "src/aurelian/agents/paperqa/paperqa_cli.py", + "sha256": "03473019451355c1553b57bf3ec5eeb2f05a7bd379125c9e0adb19b9087e786a", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 10877 + }, + { + "path": "src/aurelian/agents/paperqa/paperqa_config.py", + "sha256": "0948f704045c208f008a9a406095c0abd32caab4259119b7eae707cae0869c82", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 9297 + }, + { + "path": "src/aurelian/agents/paperqa/paperqa_gradio.py", + "sha256": "4e1cfcdbdd394c179441288a713e34645b3d30eaa537763362b2792cd64f8c7b", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8431 + }, + { + "path": "src/aurelian/agents/paperqa/paperqa_mcp.py", + "sha256": "0299c7e37899a4ce13a0fa52a44d4a41fda6178a3b1c24d73dbfd7ead8d7d227", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 9, + "row": 9341 + }, + { + "path": "src/aurelian/agents/paperqa/paperqa_tools.py", + "sha256": "9345ad58f864c809dd9e93e33fb5d1179965916f8ab64c71d8984284ef92294e", + "language": "Python", + "lines": 566, + "truncated": false, + "block": 9, + "row": 11842 + }, + { + "path": "src/aurelian/agents/phenopackets/__init__.py", + "sha256": "4eb5cda4ad8a0d48f1a24e270ae85ea553c61f846f00b3992685e30f84be8b58", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6332 + }, + { + "path": "src/aurelian/agents/phenopackets/phenopackets_agent.py", + "sha256": "47efb1a18e79f136957001b61e842f8fb956c02aff3eba5f1bbc65df7ac22299", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 8056 + }, + { + "path": "src/aurelian/agents/phenopackets/phenopackets_config.py", + "sha256": "8697379b621ba18950a09b1e95530f7ff10ad19d58241369eea6e3dd32e4ecf3", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8097 + }, + { + "path": "src/aurelian/agents/phenopackets/phenopackets_evals.py", + "sha256": "7c6d5dbb5e23d6b21c6093563080c63b6c8f1dce391b8554b53a59cdbc1281ca", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 9, + "row": 8812 + }, + { + "path": "src/aurelian/agents/phenopackets/phenopackets_gradio.py", + "sha256": "28976ee59220c98840be940b434d7624a321780534f028932be317aa31830d75", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7859 + }, + { + "path": "src/aurelian/agents/phenopackets/phenopackets_mcp.py", + "sha256": "3f386a356e910bd1398d11bdc41ccc1953f7bbeb50993b7a21dabfcc301e12c1", + "language": "Python", + "lines": 178, + "truncated": false, + "block": 9, + "row": 9345 + }, + { + "path": "src/aurelian/agents/phenopackets/phenopackets_tools.py", + "sha256": "dd4f268c0fe68b72ba49be553927d3dd9fb2b53c7672ecfccc52e7171c69f94f", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 9, + "row": 9097 + }, + { + "path": "src/aurelian/agents/rag/__init__.py", + "sha256": "7aa9d4e6d5421f9daa5b928a480814ce187b583625f8765bf388fe5797ece3c8", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 6869 + }, + { + "path": "src/aurelian/agents/rag/rag_agent.py", + "sha256": "be43ac0300d6cadfae7b1a9d52e1d0d507a12e262393c3fc13cdd02bad5ff7ed", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8259 + }, + { + "path": "src/aurelian/agents/rag/rag_config.py", + "sha256": "339ab9eb13a9ed97cadb59a2d2038224ff1d5e25a33ef6d31e6bfedfa63256af", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 8338 + }, + { + "path": "src/aurelian/agents/rag/rag_gradio.py", + "sha256": "565f4689c0cfd3194bef5dba4541f1f5fd25a1019afc99c5c0dd10b4e4ffe7cc", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 7781 + }, + { + "path": "src/aurelian/agents/rag/rag_mcp.py", + "sha256": "fa8d1cf3af0365da9f077f10387143a861ebc325aa23bbc02ba68d02d0cfdd70", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 9, + "row": 8255 + }, + { + "path": "src/aurelian/agents/rag/rag_tools.py", + "sha256": "54db7e8ddde1fa1926f95eb97670b07082895c52e2bb2ceea2d6becb4c6a3aad", + "language": "Python", + "lines": 189, + "truncated": false, + "block": 9, + "row": 9696 + }, + { + "path": "src/aurelian/agents/rag_agent.py", + "sha256": "ca8a1fa4f6c0fee990cce9c46ad9ce3f32c17de6ed865c19803c1adaf2e18bd2", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7479 + }, + { + "path": "src/aurelian/agents/robot_ontology/assets/__init__.py", + "sha256": "8e37c812269e61201bba4b72bbee6ca7fefe446f7b72d9b8d3ec8b642a4379fd", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6342 + }, + { + "path": "src/aurelian/agents/robot_ontology/robot_mcp.py", + "sha256": "303ed1a7e175ba68508a009fbcde05bb4ccae49b3ec57085d8d7bfe9c1f0039f", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 9, + "row": 8218 + }, + { + "path": "src/aurelian/agents/robot_ontology/robot_ontology_agent.py", + "sha256": "d59802d8841f23cab008786ac7b2ee297ebb7eb327fbb0ec7f9509e462944b17", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 9, + "row": 9782 + }, + { + "path": "src/aurelian/agents/robot_ontology/robot_ontology_config.py", + "sha256": "f79903517d5fcf3e34ed306bc68bdb7ffac44d8f480c79d1c1f3208a1a39bb50", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7053 + }, + { + "path": "src/aurelian/agents/robot_ontology/robot_ontology_gradio.py", + "sha256": "e07a87a0077a50f004785c64039b16e9ab3bdd5a7f2db8f4b395cd8d29b375e6", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7468 + }, + { + "path": "src/aurelian/agents/robot_ontology/robot_tools.py", + "sha256": "95294f16414c36c5c2c32cf1dcc483e444aa75a97eed3dd09c39fd53b7e042af", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 7795 + }, + { + "path": "src/aurelian/agents/schema_generator/__init__.py", + "sha256": "e8f651dee58f56384d0a9fbbc4573cf3cd7360668961d37974ecd722e3ad7bcc", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6326 + }, + { + "path": "src/aurelian/agents/schema_generator/schema_generator_agent.py", + "sha256": "139f9266e0777fc831f00d201b397c863ee6f6e02744fe1cc7f35e6a2e024c16", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 9, + "row": 9979 + }, + { + "path": "src/aurelian/agents/schema_generator/schema_generator_cli.py", + "sha256": "2f691515a3d5700abb3907c72b281a8afbddebf6b02a318b22da6f1efa37438e", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 9, + "row": 9129 + }, + { + "path": "src/aurelian/agents/schema_generator/schema_generator_config.py", + "sha256": "8a63e0c6c32655f2e170662cadc57d0d39853d3eb523c7c9258e515a5270c40a", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7767 + }, + { + "path": "src/aurelian/agents/schema_generator/schema_generator_gradio.py", + "sha256": "35c26772dcf22adb929f84c36d610de6581d070e674d8438a51c249a92580737", + "language": "Python", + "lines": 315, + "truncated": false, + "block": 9, + "row": 10952 + }, + { + "path": "src/aurelian/agents/schema_generator/schema_generator_mcp.py", + "sha256": "ad3823d45167baa924ea63bdd32f17982889432d7be27b323f83725ac78f1535", + "language": "Python", + "lines": 400, + "truncated": false, + "block": 9, + "row": 11442 + }, + { + "path": "src/aurelian/agents/talisman/__init__.py", + "sha256": "a1e6b19b82ca638f88de1d7879c4572659764bccb0cf5790472737b0000aebe1", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6344 + }, + { + "path": "src/aurelian/agents/talisman/__main__.py", + "sha256": "88772af8bc5d308e72590f7600314eabbc82fb7a0254e1797cdd54ddc5db5074", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6656 + }, + { + "path": "src/aurelian/agents/talisman/cli.py", + "sha256": "88c127c5f812926dc26a83adbfc6896480d377d8b395b6498fb858a8ef0a1706", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 8707 + }, + { + "path": "src/aurelian/agents/talisman/run_talisman.py", + "sha256": "2bf197f5ea80db0ae15c80e3b537e90a1ed41d139b9e24980ead53f6daf8496c", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6669 + }, + { + "path": "src/aurelian/agents/talisman/talisman_agent.py", + "sha256": "281bc20a4ce5fa3fcf39b7cc06bb325e0de4bc20e60a98b60c03a7b9a51174c2", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 9, + "row": 10047 + }, + { + "path": "src/aurelian/agents/talisman/talisman_config.py", + "sha256": "6d88e031e715aca5f0c19c2fee7ecb7ac7a4b3a0c511fa9511917d32a8284a14", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 8096 + }, + { + "path": "src/aurelian/agents/talisman/talisman_gradio.py", + "sha256": "a20a45c27c559e0beee54990d462b3d8975ba425a520aeddb900cb2468ac5acf", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 7592 + }, + { + "path": "src/aurelian/agents/talisman/talisman_mcp.py", + "sha256": "c906cb47a213be5deab15fa9e279ea103616fd1e6a47240d979e829045a263c9", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 9, + "row": 8022 + }, + { + "path": "src/aurelian/agents/talisman/talisman_tools.py", + "sha256": "673be91716415e9799ac8155f5aaadc15a9ae8edf3ff95af51179638787e692e", + "language": "Python", + "lines": 962, + "truncated": false, + "block": 9, + "row": 12424 + }, + { + "path": "src/aurelian/agents/ubergraph/__init__.py", + "sha256": "365f357b51fb5ca0524369c81e86345021e070e5b937e3c9d40ba02a1fd818eb", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 6894 + }, + { + "path": "src/aurelian/agents/ubergraph/ubergraph_agent.py", + "sha256": "756d481b7e70ece80d802e520e034507a2b64490ac46b7e74d17769eaad4f538", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8568 + }, + { + "path": "src/aurelian/agents/ubergraph/ubergraph_config.py", + "sha256": "162da1155bbddafe792229cd60594b8ddbedf531d7b5114f91211c5ed4eb0b5d", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8385 + }, + { + "path": "src/aurelian/agents/ubergraph/ubergraph_gradio.py", + "sha256": "1a283fdc02b40780247ef8e536494792bf3bcf6bdca61965d88f432e07dd99d5", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7406 + }, + { + "path": "src/aurelian/agents/ubergraph/ubergraph_mcp.py", + "sha256": "a7f61b124485e323744f9389f0528892e3adbad398bc52f74c90ed2727529f0b", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 8212 + }, + { + "path": "src/aurelian/agents/ubergraph/ubergraph_tools.py", + "sha256": "3adcaa3b246f8ae0489c2b8cc0ae5d9f58da149449219aba405226a8adee1569", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 9, + "row": 9033 + }, + { + "path": "src/aurelian/agents/uniprot/uniprot_agent.py", + "sha256": "28c4d128656946949c873ed8112861f59492187ce679a18451a3452893c35922", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7618 + }, + { + "path": "src/aurelian/agents/uniprot/uniprot_config.py", + "sha256": "6212f6eb96741a74de5c83476b07b988c7294761132e6758dd784d5dc60873cc", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7438 + }, + { + "path": "src/aurelian/agents/uniprot/uniprot_evals.py", + "sha256": "69901900e6057efcb0a96b96575fbaa773e95c2c4497f6641e9a65f3ccf9194c", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 9, + "row": 8623 + }, + { + "path": "src/aurelian/agents/uniprot/uniprot_gradio.py", + "sha256": "1f7f1463b83e8485dd30e8e9e15e501c9f1a4e457ef1a57d5f576f077b34c7ab", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7469 + }, + { + "path": "src/aurelian/agents/uniprot/uniprot_mcp.py", + "sha256": "0763890763050a0614c64aa2f5a7bf5d93a98f7ce276a9cb6fefa9ac3276bf6f", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 9, + "row": 9310 + }, + { + "path": "src/aurelian/agents/uniprot/uniprot_tools.py", + "sha256": "2b2ae3282343a5af0168905fb6fe91b1cd355e271aebd3faacd9e70720b77c65", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 9, + "row": 9182 + }, + { + "path": "src/aurelian/agents/web/web_config.py", + "sha256": "ba4f9eb6ef83cd881eb92db306cd1255f5ff06f67a406b345f93c5b1fd4d47e4", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6810 + }, + { + "path": "src/aurelian/agents/web/web_gradio.py", + "sha256": "4fbab3b91b816960987245a3a4bbb72f42f31cf2c42a4c54629dab8fe3a0fe6b", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7379 + }, + { + "path": "src/aurelian/agents/web/web_mcp.py", + "sha256": "de6ad497106a78c48e9ada670f6c1679db0e89125bb6f7849dbc89a9075f1174", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 7214 + }, + { + "path": "src/aurelian/agents/web/web_tools.py", + "sha256": "a124bc305c45aad70f7dd121984bae891296f3f35383792d2f16a1945f21d047", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 9330 + }, + { + "path": "src/aurelian/chat.py", + "sha256": "860f5e18a8b3fcd023c06e63346c0daa816b861c74dbd5d7ddd59d311ae4f845", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6705 + }, + { + "path": "src/aurelian/cli.py", + "sha256": "82ffc1857e45fad0805bf3eab3926ddb3f20d903ccf85e290018b1372c02256c", + "language": "Python", + "lines": 1325, + "truncated": false, + "block": 9, + "row": 12471 + }, + { + "path": "src/aurelian/dependencies/workdir.py", + "sha256": "1bf7869712a91d18cedc42f684737c96fb6d89c81266f25edf4d0a9093f8bd94", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 8055 + }, + { + "path": "src/aurelian/evaluators/knowledge_agent_evaluator.py", + "sha256": "e0168b515aab38188b374e993fe1b9ca9b96ab2bfa9ab6f6cc8024e865838230", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7602 + }, + { + "path": "src/aurelian/evaluators/model.py", + "sha256": "5127e81dc61331394f25a33df813e4b1bddab01a0377b6a6a929c721b83d618b", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 9, + "row": 6482 + }, + { + "path": "src/aurelian/evaluators/substring_evaluator.py", + "sha256": "731d5f1777f916e944783f624e482dc28fb3072b79aa07669355ca589d7f7aa4", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 7105 + }, + { + "path": "src/aurelian/mcp/amigo_mcp_test.py", + "sha256": "6dc92531db8c3f2384f952bf2ab3438e42ee54e8ed58fef41a825616844ed48b", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 9, + "row": 8559 + }, + { + "path": "src/aurelian/mcp/config_generator.py", + "sha256": "40868ba94462b8e3e019f388988b5ff3d778665b58a27a726f301c3b6be30366", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 9, + "row": 9213 + }, + { + "path": "src/aurelian/mcp/generate_sample_config.py", + "sha256": "93a5255fe293e936f5d7033a813e1d5586d43499db263a6f72431061083e02ec", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7200 + }, + { + "path": "src/aurelian/mcp/gocam_mcp_test.py", + "sha256": "261be8ad864df311ccbda7976d6d3841b8328e6d331e7ae714d88941ecc24faf", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 9, + "row": 9538 + }, + { + "path": "src/aurelian/mcp/linkml_mcp_tools.py", + "sha256": "58006d80a02d817a0cde527f238603674a314713f6f4457f6ffcaa61b3e391cb", + "language": "Python", + "lines": 190, + "truncated": false, + "block": 9, + "row": 9422 + }, + { + "path": "src/aurelian/mcp/mcp_discovery.py", + "sha256": "b1c2bb539d33e6b362acc0104c215013f04d4a51fa76a81c26ff851fa3626946", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 9, + "row": 8257 + }, + { + "path": "src/aurelian/mcp/mcp_test.py", + "sha256": "e1439b44913c9b257cd32ba51df34cda1d0c9b61aa67f3b6f65ce8ae4a655c15", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6767 + }, + { + "path": "src/aurelian/mcp/phenopackets_mcp_test.py", + "sha256": "6063ed9f076f295a3f3741262166a6834a2559c07dd458624989cae2941ed3c9", + "language": "Python", + "lines": 112, + "truncated": false, + "block": 9, + "row": 9100 + }, + { + "path": "src/aurelian/tools/web/url_download.py", + "sha256": "4e9838d72c7849dddd4e857e906059820c1852ade199e2f026db5242b9eacf83", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7464 + }, + { + "path": "src/aurelian/utils/async_utils.py", + "sha256": "9aa8d83ebf119579485ca611810f7965c1936dd21e3b0e0f1efaf7ec2968a5dd", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6594 + }, + { + "path": "src/aurelian/utils/data_utils.py", + "sha256": "2c5b92296b40a4b271146b872c6e3e661c38d9c6da40ad23b821170f8e1bdd2e", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7113 + }, + { + "path": "src/aurelian/utils/documentation_manager.py", + "sha256": "baf02723f375575213417e77cad39282f0cb6d5d0822c4a4c69283834cb71388", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 7715 + }, + { + "path": "src/aurelian/utils/doi_fetcher.py", + "sha256": "04d22c61a4bd71bdae3926348f17639d9005236552936a1dccfe29a73dd3a078", + "language": "Python", + "lines": 238, + "truncated": false, + "block": 9, + "row": 10541 + }, + { + "path": "src/aurelian/utils/ontology_utils.py", + "sha256": "7a2a425832d102867e865cfed3ab11fd677fd6a89799cbb38d5363598c191ece", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8299 + }, + { + "path": "src/aurelian/utils/pdf_fetcher.py", + "sha256": "e24d90ea563b5ce1b7fafd58cbd5d87f000923132ae81a3e5537d4be827b637f", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6898 + }, + { + "path": "src/aurelian/utils/process_logs.py", + "sha256": "69283f2332bd780ab168a379c74b2480e7e5d607e924db9eda02d9bbfdfbfeb6", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 8664 + }, + { + "path": "src/aurelian/utils/pubmed_utils.py", + "sha256": "1a4d3496ed4bbf419148d785e4ce33a65a7750c4a97b96f209a54a0898a6507d", + "language": "Python", + "lines": 238, + "truncated": false, + "block": 9, + "row": 10104 + }, + { + "path": "src/aurelian/utils/pytest_report_to_markdown.py", + "sha256": "587d4d9645588f451f52aa578d10f528ca64320116dea7afddf0dd3ef646f58c", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 7440 + }, + { + "path": "src/aurelian/utils/robot_ontology_utils.py", + "sha256": "69a45ef5ec8b8090ad8f511f575defe10ee48454d6cd4a0514413f962cc6b868", + "language": "Python", + "lines": 112, + "truncated": false, + "block": 9, + "row": 8855 + }, + { + "path": "src/aurelian/utils/search_utils.py", + "sha256": "d9e13cbbd484a06d714989530b70805a835a0231aa00578974803b2cb5afd36a", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 8687 + }, + { + "path": "test_complex_d4d.py", + "sha256": "7d34da779e3b0baefc4f1b86a9cdf99cf912a214a56da43702aaba55a17a2d7d", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 9059 + }, + { + "path": "test_d4d.py", + "sha256": "db049196f6300b1683e5f6a2be09cc122aa30714a462e30082bcb95c4b823707", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 7540 + }, + { + "path": "test_d4d_builtin.py", + "sha256": "dbd3ec2c11a698649b84ea78e4cbe08d052b291ff00f935e2241517e5d276ef7", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 8633 + }, + { + "path": "tests/__init__.py", + "sha256": "f50b5afaf189a853e5f440ef6d93c27d9bb3c65173c4bc5f0f980b6441893335", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6371 + }, + { + "path": "tests/conftest.py", + "sha256": "dd2445858cff161bac0520308e4e4a07610f14f597fc0960bed49220e9c179e6", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 9, + "row": 6510 + }, + { + "path": "tests/test_agents/test_amigo_agent.py", + "sha256": "5a084ec70baa86fd38e9df0d724efebc34eb020c0a58e0ef951d81f1148a208a", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7159 + }, + { + "path": "tests/test_agents/test_chemistry_agent.py", + "sha256": "5ecf47453a5748d9d7282235044af1c68053b723ddb230cc58eecd9eacc424c7", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6982 + }, + { + "path": "tests/test_agents/test_diagnosis_agent.py", + "sha256": "50e863f75915036cdcf01462aa975031c63a4a32d2d6fda4de459aa96e6a4a7f", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7280 + }, + { + "path": "tests/test_agents/test_draw/__init__.py", + "sha256": "114c68062bc80292702c0da13792f2aa501d4406e9c2af0a084d46620a1b6e67", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6108 + }, + { + "path": "tests/test_agents/test_github/test_github_tools.py", + "sha256": "1328fd0beac7db5f0940b542233a37387e0f76e39fa5258d4b1d9b904136fdc2", + "language": "Python", + "lines": 370, + "truncated": false, + "block": 9, + "row": 11134 + }, + { + "path": "tests/test_agents/test_github/test_integration.py", + "sha256": "c9ed36d0bbdd4db34a8404bbd81290773f2728ba7de2c5c0e386daf71fecac1f", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 9446 + }, + { + "path": "tests/test_agents/test_gocam_agent.py", + "sha256": "54033a0111ef7847e0a445f3598ef7bcba2fa0d990ca6b5410054c40a9e21eff", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 9, + "row": 8786 + }, + { + "path": "tests/test_agents/test_linkml_agent.py", + "sha256": "b7e47f3c08e63918bab8e7b91b6742d54552fe8fcccf3df4423599bf9050b4a5", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 8121 + }, + { + "path": "tests/test_agents/test_literature_agent.py", + "sha256": "ced61def2da1434d5fed47b04dc563dcec0853f76f0b87a82f98c5084ee16d22", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7175 + }, + { + "path": "tests/test_agents/test_monarch_agent.py", + "sha256": "e9c5eb4ad4c659c7484f2bab95d25c5e3a7c5f4f5ebc38a56b4151366c3f4134", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8138 + }, + { + "path": "tests/test_agents/test_ontology_mapper_agent.py", + "sha256": "0c11eb1e6bfee3604cfaa651e42702302e469e4c3e6c76ec8c4e87ae63e447ed", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7161 + }, + { + "path": "tests/test_agents/test_paperqa_agent.py", + "sha256": "1e9319d89c98dab38dede61cae287a4a07eb67154286e44387c5f77c1ec0a0a0", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8479 + }, + { + "path": "tests/test_agents/test_phenopacket_agent.py", + "sha256": "da7f339893261cb0621e823e044f4ad39e2e27df3b1f6224c11f992661c2a2d1", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7096 + }, + { + "path": "tests/test_agents/test_robot_ontology_agent.py", + "sha256": "0fdcb284320c13efa719c4c4ea7ab706be68d36dfe847203914f2a6a244ca0d7", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7708 + }, + { + "path": "tests/test_agents/test_talisman_agent.py", + "sha256": "8921f687f880069ee970ca61552853d1b295bc105e415433becea808d8dcfd27", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 9259 + }, + { + "path": "tests/test_agents/test_talisman_analysis.py", + "sha256": "d021ce03058372c48c2321f58023d964a4d78d8578a0a222729650828bf44b4a", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8595 + }, + { + "path": "tests/test_agents/test_talisman_lookup.py", + "sha256": "631f97aeb5d7756d9f8aedab7d902499512e9955c4537ba533ff75293ea7d53f", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 9, + "row": 8465 + }, + { + "path": "tests/test_agents/test_ubergraph_agent.py", + "sha256": "440bcad670920810a4b1fddf521f3bb84efb48ccd3690c4d1a747a350ec63f4d", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6936 + }, + { + "path": "tests/test_agents/test_uniprot_agent.py", + "sha256": "3d30e44464956dc581b445105897dea1a1ec7a86a7428d4909b5a36e272088ef", + "language": "Python", + "lines": 244, + "truncated": false, + "block": 9, + "row": 10316 + }, + { + "path": "tests/test_agents/test_web_tools.py", + "sha256": "c471ec7fde27c68514859a546cde78c52f6b16b1a69e09a1e73d0d144be3a9dd", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 9, + "row": 10033 + }, + { + "path": "tests/test_cli_commands.py", + "sha256": "20817393404d859951a3b0e338f5617493bacc4390358a21fdf2d8f16fd1f81b", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8454 + }, + { + "path": "tests/test_cli_config.py", + "sha256": "61eb99f77c7e3d45530a94d289d57a27075a309233da8846abc1681a901147c0", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 8596 + }, + { + "path": "tests/test_cli_imports.py", + "sha256": "ca0bba70a3786e88aeb5450023a58dc9472f2f96b9f95d58766f035b0f7f4269", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7726 + }, + { + "path": "tests/test_utils/test_ontology_utils.py", + "sha256": "21f4a7365c0818190994d93833902b4dd5cddc76169250bd159e5f1e107de512", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6812 + }, + { + "path": "tests/test_utils/test_robot_ontology_utils.py", + "sha256": "3d0c3a086af0f3880e2757e86d1f5a602b192ae5dc026f1c15e45b30ccf9b396", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 7553 + }, + { + "path": "validated_d4d_wrapper.py", + "sha256": "163f2f535b148f1a0a5a2e5e25f74ad6ced04edebdc2178b771b10e6f69c73a4", + "language": "Python", + "lines": 831, + "truncated": false, + "block": 9, + "row": 12375 + } + ] +} \ No newline at end of file diff --git a/manifests/8b/github.com__stem-cell-medicine-lab__cellpose_pipeline-models.json b/manifests/8b/github.com__stem-cell-medicine-lab__cellpose_pipeline-models.json new file mode 100644 index 0000000000000000000000000000000000000000..81cc60dd42d542e4821aaf0416f5e9d1992d7908 --- /dev/null +++ b/manifests/8b/github.com__stem-cell-medicine-lab__cellpose_pipeline-models.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/stem-cell-medicine-lab/cellpose_pipeline-models", + "url": "https://github.com/Stem-Cell-Medicine-Lab/Cellpose_pipeline-models", + "host": "github.com", + "commit": "59a4cac17caef1533be9d96ba91c626f00694d88", + "license": "CC0-1.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499", + "language": "License", + "lines": 121, + "truncated": false, + "block": 1, + "row": 2210 + }, + { + "path": "README.md", + "sha256": "d362444a12cbcdea4c91335f7148bdde4223090a0795d6f712ba89df119f07a0", + "language": "Text", + "lines": 44, + "truncated": false, + "block": 9, + "row": 14568 + }, + { + "path": "main.py", + "sha256": "f7795f663610f5fbbdaa640a24112e48932e899f95b75e4d6cabb1139c5b3692", + "language": "Python", + "lines": 2149, + "truncated": false, + "block": 9, + "row": 12617 + } + ] +} \ No newline at end of file diff --git a/manifests/8b/github.com__velocyto-team__velocyto.py.json b/manifests/8b/github.com__velocyto-team__velocyto.py.json new file mode 100644 index 0000000000000000000000000000000000000000..9f355dc501e11825b3a7e88440e2cebb14a59adf --- /dev/null +++ b/manifests/8b/github.com__velocyto-team__velocyto.py.json @@ -0,0 +1,309 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/velocyto-team/velocyto.py", + "url": "https://github.com/velocyto-team/velocyto.py", + "host": "github.com", + "commit": "56efe891ec3d383d83ad45360f58350c12824c4d", + "license": "BSD-2-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "9afffbe2131ec6a407cf6923f23084f783ab4553902cd014f9a8475d42fd6bdd", + "language": "License", + "lines": 25, + "truncated": false, + "block": 9, + "row": 2874 + }, + { + "path": "README.md", + "sha256": "05e586c80f588403b65d8a1a9b195d9024020ba9a1c05f7f8ab03995353e6fb0", + "language": "Text", + "lines": 8, + "truncated": false, + "block": 9, + "row": 14465 + }, + { + "path": "doc/_ext/edit_on_github.py", + "sha256": "e6057237d55cc44163a1c890b84da1fcfd12d1efe80a309ed9ce9aab2464d2ae", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7559 + }, + { + "path": "doc/conf.py", + "sha256": "ada51eef759d1986c1a3f5408896338c19066340f7d7293f83e061c81735a597", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 9, + "row": 10132 + }, + { + "path": "setup.py", + "sha256": "d9c13c4415b992f7fc6771249543a586ab8e9f88414bd6cb2e71a9be214b8175", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 8204 + }, + { + "path": "velocyto/__init__.py", + "sha256": "be7f98a72e072d89bce8ccfd2dbc793253e4cf9d4be30e469ef509b36e2563dd", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7456 + }, + { + "path": "velocyto/_version.py", + "sha256": "070b29bcdf29275ac69e70fc066f526616d5d8581c0f61f74d76905b4f100292", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6096 + }, + { + "path": "velocyto/analysis.py", + "sha256": "99d34e9066a574803356d4109b7757ca64785e1dded9e31b74c8a9e00b458d7d", + "language": "Python", + "lines": 2470, + "truncated": false, + "block": 9, + "row": 12669 + }, + { + "path": "velocyto/commands/_run.py", + "sha256": "8e810320cf15e225882b82b27019f144e07d6fd9319466009891c7c777c03629", + "language": "Python", + "lines": 288, + "truncated": false, + "block": 9, + "row": 11328 + }, + { + "path": "velocyto/commands/dropest_bc_correct.py", + "sha256": "729a8a1a9da165d3d6d98002746cb2a7809b44e11cc13140f9ae08b76a0e9dc3", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 9, + "row": 8798 + }, + { + "path": "velocyto/commands/run.py", + "sha256": "fcf9864d67fd19dd59969e5636c96b8c1e6aeddf75160b7fd0eeb94d38121364", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 9899 + }, + { + "path": "velocyto/commands/run10x.py", + "sha256": "1264643426ef0b389deb8b0cb4fc09791f6d6329eccbe30ad37f3fb1019d0f24", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 9, + "row": 9777 + }, + { + "path": "velocyto/commands/run_dropest.py", + "sha256": "5195af7499c335964ed968280304226cc0baf57e951ecea16bc3ac858e11d662", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 9, + "row": 9629 + }, + { + "path": "velocyto/commands/run_smartseq2.py", + "sha256": "f6c00681677f862557d233f124d639ba464932fb8710eaae1d756165ded65ad7", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 8788 + }, + { + "path": "velocyto/commands/velocyto.py", + "sha256": "051d84f95bb73cc4e6ea27fc9813458947b14920bf337ac17cbe693daa6aebfc", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7605 + }, + { + "path": "velocyto/constants.py", + "sha256": "0f417f2c2d7638b9d77a4b8767b9d8ff875ac55ba6dd6a38c100fa6babc9fc14", + "language": "Python", + "lines": 233, + "truncated": false, + "block": 9, + "row": 11527 + }, + { + "path": "velocyto/counter.py", + "sha256": "c732567c3a71b30bc5baebf13cef4322f701e66ca952dba6e2d9903c2e218c89", + "language": "Python", + "lines": 1274, + "truncated": false, + "block": 9, + "row": 12584 + }, + { + "path": "velocyto/diffusion.py", + "sha256": "879a799261dabb05bcd6f5ea9bfc4de5924b9424b3e1ef17b0fe547d1d243b81", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9454 + }, + { + "path": "velocyto/estimation.py", + "sha256": "2772cd0b6c01f5fb7cc120cb2deb1ee1b974a0cf0b2676c33a8d1ed3fe6aae25", + "language": "Python", + "lines": 389, + "truncated": false, + "block": 9, + "row": 11532 + }, + { + "path": "velocyto/feature.py", + "sha256": "12087dbf759ae71fbacb679e2614183a3be6b4ff1a1972f6d4b33445c2aa90df", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 9, + "row": 9835 + }, + { + "path": "velocyto/gene_info.py", + "sha256": "31d2762d2cb96baef7048ce9adaf3412a9a79b2c98590497ab995c3a7026889f", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6758 + }, + { + "path": "velocyto/indexes.py", + "sha256": "fe99959e8cfc1dfbfaa7b75bb2b24f3a136f8d414c310be4452bfacfe1b219a6", + "language": "Python", + "lines": 269, + "truncated": false, + "block": 9, + "row": 11215 + }, + { + "path": "velocyto/logic.py", + "sha256": "becc58e6daf5af95362a24e2c92a4bdc40c862489f8e0903d509ea66266e8edb", + "language": "Python", + "lines": 1145, + "truncated": false, + "block": 9, + "row": 12554 + }, + { + "path": "velocyto/metadata.py", + "sha256": "b78e1a2234e3aae9508debc825770116b989b0206b3dd667c93d164456e35547", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7502 + }, + { + "path": "velocyto/molitem.py", + "sha256": "c306ece32d8105bd570afaa364733cb4c11f456950b7248ae09eb6dd1cabba9c", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7813 + }, + { + "path": "velocyto/neighbors.py", + "sha256": "de4827b97cb420119ff3ec5d2afa10af77f290e7620954e9c8c7bec7fa9c8500", + "language": "Python", + "lines": 451, + "truncated": false, + "block": 9, + "row": 11738 + }, + { + "path": "velocyto/r_interface.py", + "sha256": "f63afed74c64a1742586ff8306ab5884103e0c722830774ee40f702a2ac9f45c", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 8095 + }, + { + "path": "velocyto/read.py", + "sha256": "52492efe5256b986947accae98c88a9588c8fa98e327fb4ae1759e25d3b6f7fe", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7589 + }, + { + "path": "velocyto/segment_match.py", + "sha256": "8838f6b92b5602faf3d33f27534b41b85d7249c483974c59c84be02ddebac8d0", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7547 + }, + { + "path": "velocyto/serialization.py", + "sha256": "21d0a67ac246bdcf9c2942bd3d9eb898a44f98be39c107787b0679dbfecae1d0", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 9, + "row": 8961 + }, + { + "path": "velocyto/speedboosted.c", + "sha256": "3d272656d78a1b60728d1276a8acf2b4a940f69ac5a0c155d66b98e39cf54383", + "language": "C", + "lines": 4672, + "truncated": true, + "block": 9, + "row": 154 + }, + { + "path": "velocyto/transcript_model.py", + "sha256": "d6d998656cf99f0f4df7a3b323aaab1549911bf12d301707a0f6e8d26e90da40", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 9, + "row": 9739 + }, + { + "path": "velocyto/utils.py", + "sha256": "4da792abb69d5e04a01840302091fbde876ebebfece99263692dd4548f14cf1b", + "language": "Python", + "lines": 144, + "truncated": false, + "block": 9, + "row": 9650 + } + ] +} \ No newline at end of file diff --git a/manifests/8c/zenodo__15190762.json b/manifests/8c/zenodo__15190762.json new file mode 100644 index 0000000000000000000000000000000000000000..8c516eaefb21d85557f687079289468c394170a1 --- /dev/null +++ b/manifests/8c/zenodo__15190762.json @@ -0,0 +1,75 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:15190762", + "url": "10.5281/zenodo.15190762", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Cis&Trans_DTMR.R", + "sha256": "c98f039cf430d91caf51a8dbbcda03cfa0b17407ee60684aa5708be9fd33b3ed", + "language": "R", + "lines": 166, + "truncated": false, + "block": 9, + "row": 13598 + }, + { + "path": "CisLT_DTMR.R", + "sha256": "7f3ca878ec65162eac6437b34bc3c1d886bb0f90db8705246a72ad2249422eb5", + "language": "R", + "lines": 179, + "truncated": false, + "block": 9, + "row": 13616 + }, + { + "path": "Cis_DTMR.R", + "sha256": "f4239f5c6a3d72a76a52a92e54e3c53e8e8e25c8a9be66858764d38c37e9355f", + "language": "R", + "lines": 187, + "truncated": false, + "block": 9, + "row": 13629 + }, + { + "path": "GColoc_DTMR.R", + "sha256": "4b20b84648c68fec6955fe684ef3c0cce8b3aeb1593d485968d2324a2a261ba8", + "language": "R", + "lines": 274, + "truncated": false, + "block": 9, + "row": 13614 + }, + { + "path": "LICENSE", + "sha256": "4fd5ba68325ba760abc39093f10a5e6e822d175da4d2edb26a9026281ae6e6b2", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2776 + }, + { + "path": "README.md", + "sha256": "89a22537db67632d1785f857ec04c153315e2a341635a58c3f1bee211b4ed817", + "language": "Text", + "lines": 149, + "truncated": false, + "block": 9, + "row": 14629 + }, + { + "path": "SNPColoc_DTMR.R", + "sha256": "40a1d7b7e60ed5b86780f619368372bfff502a934c8093bd738b8fdb33fd7515", + "language": "R", + "lines": 308, + "truncated": false, + "block": 9, + "row": 13643 + } + ] +} \ No newline at end of file diff --git a/manifests/8d/github.com__neurolabusc__surf-ice.json b/manifests/8d/github.com__neurolabusc__surf-ice.json new file mode 100644 index 0000000000000000000000000000000000000000..0c8cc22e03f9e6520eaa276054079dc38ccf5a85 --- /dev/null +++ b/manifests/8d/github.com__neurolabusc__surf-ice.json @@ -0,0 +1,417 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/neurolabusc/surf-ice", + "url": "https://github.com/neurolabusc/surf-ice", + "host": "github.com", + "commit": "69f80b6e676ce56d1d99825c3579e59fc1e7e419", + "license": "BSD-2-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "892e99afeea449c946b3bd0f399df1c25aa159e4e570a3b2c340a7b368856c4c", + "language": "License", + "lines": 25, + "truncated": false, + "block": 9, + "row": 2871 + }, + { + "path": "README.md", + "sha256": "6e0723478b99a82b2dc1e4273affffb77c1d1e6b47555fb1938eb0c7d310d0d7", + "language": "Text", + "lines": 72, + "truncated": false, + "block": 9, + "row": 14650 + }, + { + "path": "Resources/script/basic_paint_surface.py", + "sha256": "7cc85e19790b14e7074677a8e0d93fe7eff1a701120ce131f55928fad8b154dd", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6525 + }, + { + "path": "Resources/script/fmri_mesh.py", + "sha256": "2c91281a0357b8f8fda9f05880c870dbdd7ecf44c17f31c1bd9f5ea41458eeeb", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6448 + }, + { + "path": "Resources/script/help.py", + "sha256": "bc8880e4e870e361c46b019d7d543923e3b94310503fe792141e79640c6e41c6", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 9, + "row": 6455 + }, + { + "path": "Resources/script/hide_curves.py", + "sha256": "f87f188b443b5e1f6565cb4f24ccb1b7863fbdb75f622d7cd8e8afd5dfbd6fab", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6457 + }, + { + "path": "Resources/script/matcapMesh.py", + "sha256": "f245510eef9e9715ecfd5219d27696e5cc21a04b0690b724ba33ce5aec8d7ddd", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 9, + "row": 6511 + }, + { + "path": "Resources/script/matcapPainted.py", + "sha256": "0119b53bcce4d2cb065508a11cc4369df48fa0ee4d2092dcaf7d8d48fc6bd8a0", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6495 + }, + { + "path": "Resources/script/matcapSubcortical.py", + "sha256": "236a59164265344f487ba2c004b9e76b3f260a7a910a41bcc0d44e8011828501", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 3, + "row": 17651 + }, + { + "path": "Resources/script/mesh.py", + "sha256": "5232e4f8e01f8c6526127a407c8675d173992ccb303862824b9bfae318937402", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 3, + "row": 17731 + }, + { + "path": "Resources/script/newer_2017.py", + "sha256": "6e60f42cb78187228febf719d39b8bf21ddb666dc75f66c53c5522343e2fc46f", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6648 + }, + { + "path": "Resources/script/node.py", + "sha256": "22baf296e2de602c7b422579099eba9d442c77100c2afc7b2cd09054b04c57fd", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6609 + }, + { + "path": "Resources/script/shaders.py", + "sha256": "20fb8d5036b58ec9f69aba4c8c8ca62c88c43166c9f920156f638fa232c3b057", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6976 + }, + { + "path": "Resources/script/track.py", + "sha256": "f0c285a1a549082730bdfa441081cc71d6a0635214f69162f1a57c141f34ccbd", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 3, + "row": 17736 + }, + { + "path": "Resources/script/walnut.py", + "sha256": "8375e7ab198e4d1cfb03968115fb83fc08187e958552a2bbc9ee86efdd9e191c", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6713 + }, + { + "path": "mz3/blender-mz3-addon/import_mz3.py", + "sha256": "f7c7220f7e5734d1b0a5c31d9007ffad9164b1bf38119e0f9bf5ce2dd5000c40", + "language": "Python", + "lines": 376, + "truncated": false, + "block": 9, + "row": 11218 + }, + { + "path": "mz3/demo_mz3 copy.m", + "sha256": "d1bc6f5cc7ee79f758c77b3834c801b2ba0caf30dc465ddc063a3836e06ee51b", + "language": "MATLAB", + "lines": 139, + "truncated": false, + "block": 9, + "row": 5159 + }, + { + "path": "mz3/demo_mz3.m", + "sha256": "ca4f175b3ed4c54a0e29686e6e480bd6baeadb18e0497d34e4151e2ee097f791", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 9, + "row": 4297 + }, + { + "path": "mz3/mz3.py", + "sha256": "6d3db7a590f6fd985b7603843b2ee37e455ac1195f3bba37b69a77712b7edece", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9264 + }, + { + "path": "mz3/readMz3.m", + "sha256": "60b84b61a57171daf9f495eab6c68a0539acbd26c581a62b0c1e9fe27f10b4ac", + "language": "MATLAB", + "lines": 133, + "truncated": false, + "block": 9, + "row": 5106 + }, + { + "path": "mz3/spmTest.m", + "sha256": "1ab22a87c3d7651a49ad3ff0487db05b88470d4f8c71308eb5d4962363e854a7", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3635 + }, + { + "path": "mz3/threejs/MZ3Loader.js", + "sha256": "2afa6abfe7482985c45569855c8ed94978d2aa26a60f32373a20fb42ffd28aa2", + "language": "JavaScript", + "lines": 190, + "truncated": false, + "block": 9, + "row": 2074 + }, + { + "path": "mz3/writeMz3.m", + "sha256": "d956264a191d8c36fa19b4d570ff3b2e6da17e3dfb8247fde8d78023b2f1b6f9", + "language": "MATLAB", + "lines": 173, + "truncated": false, + "block": 9, + "row": 5381 + }, + { + "path": "surfice.app/Contents/Resources/script/basic_paint_surface.py", + "sha256": "7a0a92d90298ca6c7af868851ee100088601aca872c9a5a2b2be5f2cb558224a", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 3, + "row": 17883 + }, + { + "path": "surfice.app/Contents/Resources/script/contour.py", + "sha256": "6f9f23f4fd7931674b1b046a5ab064f4c5b03efbb4cca6c0b353c16324950974", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 3, + "row": 18226 + }, + { + "path": "surfice.app/Contents/Resources/script/create_lut.py", + "sha256": "eb7c33b5c537f7d77f71985ea61b7c61b04f79c9c66d71dcc4bd41401db38e7c", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6661 + }, + { + "path": "surfice.app/Contents/Resources/script/fmri_mesh.py", + "sha256": "73cfb1c019da419282b4df554b8f7c72b7965b607b8be58210c200a1bd635aeb", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6446 + }, + { + "path": "surfice.app/Contents/Resources/script/help.py", + "sha256": "bc8880e4e870e361c46b019d7d543923e3b94310503fe792141e79640c6e41c6", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 9, + "row": 6455 + }, + { + "path": "surfice.app/Contents/Resources/script/hide_curves.py", + "sha256": "88837bc3db33d317feb399a4d0af6e7fd3269e037a01fb3f2aa23b3cb1920888", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 3, + "row": 17727 + }, + { + "path": "surfice.app/Contents/Resources/script/jstartup.py", + "sha256": "14edf228084bd679af35a28d66dca474492046f34d536f410bc644d9a38f8b43", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6423 + }, + { + "path": "surfice.app/Contents/Resources/script/matcap.py", + "sha256": "420280b3939a450ef577183727a76b04b346b4c635a36e9f9777f788a0231902", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 9, + "row": 6494 + }, + { + "path": "surfice.app/Contents/Resources/script/matcapMesh.py", + "sha256": "6a2ff814b0773219b86e31e283dd5b6e02343363123d41ddc33d3977788c1462", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 9, + "row": 6508 + }, + { + "path": "surfice.app/Contents/Resources/script/matcapPainted.py", + "sha256": "6ce46deb11331c55f6d6fbcb1da8027dfcc9ad53b2197d93346f3dc84f82acb6", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 3, + "row": 17817 + }, + { + "path": "surfice.app/Contents/Resources/script/matcapSubcortical.py", + "sha256": "236a59164265344f487ba2c004b9e76b3f260a7a910a41bcc0d44e8011828501", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 3, + "row": 17651 + }, + { + "path": "surfice.app/Contents/Resources/script/mesh.py", + "sha256": "5232e4f8e01f8c6526127a407c8675d173992ccb303862824b9bfae318937402", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 3, + "row": 17731 + }, + { + "path": "surfice.app/Contents/Resources/script/newer_2017.py", + "sha256": "d4186df1ad7116465a6c31498fc691c5ce8c31c46282fbf7333381a951cb2410", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6646 + }, + { + "path": "surfice.app/Contents/Resources/script/node.py", + "sha256": "83b5163b29695a2c9569ad63102f80228cb07893f17b4b6f15fa51650685e610", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6607 + }, + { + "path": "surfice.app/Contents/Resources/script/over.py", + "sha256": "86c006607da15f1947f6aa6876682dd6f1e892925ad93d1235cf5e610f4952cc", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7111 + }, + { + "path": "surfice.app/Contents/Resources/script/over2.py", + "sha256": "25ab2f81d7eb8c08cbae853e5448cb9bcbde84e65fa3980788f2b2cabace9702", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 9, + "row": 6496 + }, + { + "path": "surfice.app/Contents/Resources/script/shaders.py", + "sha256": "a0f3d54395ea8d26d3a9d87a55c6d1d8ddc2b43689ac38323bef892f12c92a8e", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 6975 + }, + { + "path": "surfice.app/Contents/Resources/script/startup.py", + "sha256": "ac278822e1dcffe4fec3ed82951baf35116627f8a000c02f15f27e286e4c25a7", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6639 + }, + { + "path": "surfice.app/Contents/Resources/script/track.py", + "sha256": "f0c285a1a549082730bdfa441081cc71d6a0635214f69162f1a57c141f34ccbd", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 3, + "row": 17736 + }, + { + "path": "surfice.app/Contents/Resources/script/walnut.py", + "sha256": "8375e7ab198e4d1cfb03968115fb83fc08187e958552a2bbc9ee86efdd9e191c", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6713 + }, + { + "path": "surfice.app/Contents/Resources/script/ystartup.py", + "sha256": "364809615d14e46e9baa9c3ae38b6be06d8c4e0fad37c0f3843e68d9e726784d", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6419 + }, + { + "path": "surfice.app/Contents/Resources/script/zwatertight.py", + "sha256": "6d616c6c21638d98ba2bb108c194bef9068aeae562792c29aa1400544afe85f5", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6364 + } + ] +} \ No newline at end of file diff --git a/manifests/8e/github.com__griffithslab__whobpyt.json b/manifests/8e/github.com__griffithslab__whobpyt.json new file mode 100644 index 0000000000000000000000000000000000000000..2eef44913fdd3adb8b959fef3c7748db4f1fb166 --- /dev/null +++ b/manifests/8e/github.com__griffithslab__whobpyt.json @@ -0,0 +1,543 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/griffithslab/whobpyt", + "url": "https://github.com/griffithslab/whobpyt", + "host": "github.com", + "commit": "0fd8b9c446eb64fd3d623b2e0ab4c169520b43cf", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "e430004c02d0bf3327b052faee2dbb684934fb46650c8e030e3f9716069b520e", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2850 + }, + { + "path": "README.rst", + "sha256": "9a79c3f6c2b328062395b8e8ebcf11ecbb0af39b7a2dc0659431a21d86aae835", + "language": "Text", + "lines": 26, + "truncated": false, + "block": 9, + "row": 14494 + }, + { + "path": "doc/conf.py", + "sha256": "551fb38ddb3062ab431d30d6034567a106f859d9202cc1847843d8694130d14e", + "language": "Python", + "lines": 1410, + "truncated": false, + "block": 9, + "row": 12465 + }, + { + "path": "examples/eg__ismail2025.py", + "sha256": "e6fcebe8a6032d64f16fc466073cf4e225fdb95c35a32ed65e25a7db0a0d53f4", + "language": "Python", + "lines": 326, + "truncated": false, + "block": 9, + "row": 11385 + }, + { + "path": "examples/eg__ismail2026.py", + "sha256": "a5ff98c24b3d765efde0f041648a142759d52b4574ff189d953f775a7bd49555", + "language": "Python", + "lines": 299, + "truncated": false, + "block": 9, + "row": 11383 + }, + { + "path": "examples/eg__momi2023.py", + "sha256": "7c4da2c58bce03a4099555939735fbbd028a6f981e276e4cdc18f89d28e7b6c3", + "language": "Python", + "lines": 1364, + "truncated": false, + "block": 9, + "row": 12532 + }, + { + "path": "examples/eg__momi2025.py", + "sha256": "25b514f7d4206e9fd4d92e54ff9157c22f7145184b7ee352b79a3a3b5dac82b4", + "language": "Python", + "lines": 1303, + "truncated": false, + "block": 9, + "row": 12506 + }, + { + "path": "examples/eg__tmseeg.py", + "sha256": "13077c91cad309fabb5fbad1175f0bf68d696674275924fc4f023c9125e7bfda", + "language": "Python", + "lines": 240, + "truncated": false, + "block": 9, + "row": 10563 + }, + { + "path": "setup.py", + "sha256": "ab65e059cae8c069daac912e43c72ddbe695585ec8d6a4aa93714c31c06765bd", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7135 + }, + { + "path": "whobpyt/__init__.py", + "sha256": "449cb4b42ceccc7b6550951c2b6bc6c286d6857ae94ad029a34be566f24b51e6", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 9, + "row": 6412 + }, + { + "path": "whobpyt/datasets/__init__.py", + "sha256": "6f6db4c5029a6235f42f137563af755584f3e664fac26ad4e5774418d7bdde04", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6328 + }, + { + "path": "whobpyt/datasets/dataload.py", + "sha256": "184b14de38cdb3f9c2a9204227530f76c89ae8e0798c0300e727ce74c57db052", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7313 + }, + { + "path": "whobpyt/datasets/fetchers.py", + "sha256": "66abe4e866542339f8de2f377bca3ab4926c0440563c034a74d7eae94ce39691", + "language": "Python", + "lines": 442, + "truncated": false, + "block": 9, + "row": 11658 + }, + { + "path": "whobpyt/datasets/generators.py", + "sha256": "9b4ce8bb743593f4e8c610698e870fda1aa19646bffa422af690bb4c5dd6a18a", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 9, + "row": 10217 + }, + { + "path": "whobpyt/datatypes/__init__.py", + "sha256": "69ed7afb08d24051def9705ba9ee2da3c58538683002ebc9e5446cc6577c642c", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6554 + }, + { + "path": "whobpyt/datatypes/abstract_fitting.py", + "sha256": "98295ccdec52f0c17ba86ff04b2a30d8e8a4023c68d5d2bfebc6e7bfa77bd4f8", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 9, + "row": 7325 + }, + { + "path": "whobpyt/datatypes/abstract_loss.py", + "sha256": "8c78546be23bdaff1e0373b5278f7ddb209b04d3d7f708a6d72f2a9456324606", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7895 + }, + { + "path": "whobpyt/datatypes/abstract_measurement_model.py", + "sha256": "8712a0b99b18b5662014bc449eb852fd0475a430e760e8e202c5b10d69949747", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7433 + }, + { + "path": "whobpyt/datatypes/abstract_neural_model.py", + "sha256": "47f2b2238dca1bd674a4862bfa811385b654627efa55d59226d1d1c86b804ac1", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 9206 + }, + { + "path": "whobpyt/datatypes/abstract_params.py", + "sha256": "33aa518a264050b4472205490e88f8b4ac4103343b49a866f51efbc00f0cba68", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7461 + }, + { + "path": "whobpyt/datatypes/outputs.py", + "sha256": "14f164cce4c974ba6641fd02607a3d7360600bce82f59f4224be6b8715ec354b", + "language": "Python", + "lines": 173, + "truncated": false, + "block": 9, + "row": 9292 + }, + { + "path": "whobpyt/datatypes/parameter.py", + "sha256": "be9099b75fd40f3d94309699b17a90eef891937513650926b54bbbdd56235644", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 9, + "row": 9209 + }, + { + "path": "whobpyt/datatypes/timeseries.py", + "sha256": "d01b34f59c5d453cd93072b446c14ae6040022fe1d94b5d5255e968e82e93b9d", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 9, + "row": 9029 + }, + { + "path": "whobpyt/depr/__init__.py", + "sha256": "4b75630590f7168ce4e65602d4fe35475184a5813bdd26a288db4db196d3304d", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6087 + }, + { + "path": "whobpyt/depr/data.py", + "sha256": "1bacf116e96db8684140b0191d14a180b7b9adc753c18232e0e7e2f0ae7f638c", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6104 + }, + { + "path": "whobpyt/depr/euclidean_distance.py", + "sha256": "e538e8104de9c4ff29cb0633f9b480bd33a43b7d8d6ea27f2bfc2caefe6439ec", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 9, + "row": 6591 + }, + { + "path": "whobpyt/depr/fit.py", + "sha256": "2895bd74e5e2fc48ade9e8df51ae2b3f091a478d17dc0a828f8052f721d757df", + "language": "Python", + "lines": 424, + "truncated": false, + "block": 9, + "row": 11887 + }, + { + "path": "whobpyt/depr/ismail2025/__init__.py", + "sha256": "75cbe3e42f44d85d8a0ac1993c10677107ff12f549002d6a4209f20fc3f8644c", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6083 + }, + { + "path": "whobpyt/depr/ismail2025/jansen_rit.py", + "sha256": "c7989bbe18cbadb88358d77217b260c7c55feef1154e88a1832d34641eaa6d85", + "language": "Python", + "lines": 1478, + "truncated": false, + "block": 9, + "row": 12579 + }, + { + "path": "whobpyt/depr/models.py", + "sha256": "078b98dda5b5a2131b8b40ac189bf1d215923299aff033ea9ac009d7f8b1912a", + "language": "Python", + "lines": 1846, + "truncated": false, + "block": 9, + "row": 12604 + }, + { + "path": "whobpyt/depr/momi2023/__init__.py", + "sha256": "75cbe3e42f44d85d8a0ac1993c10677107ff12f549002d6a4209f20fc3f8644c", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6083 + }, + { + "path": "whobpyt/depr/momi2023/bar_plot.py", + "sha256": "cea1defd0ba757c0bea308d8f7de3885c69a5aca16ed635104dd4326e420932a", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 8198 + }, + { + "path": "whobpyt/depr/momi2023/jansen_rit.py", + "sha256": "6f08bf3d0aff20aeae8e9a726d1a61054b67f175af7e8919e960404faba79431", + "language": "Python", + "lines": 900, + "truncated": false, + "block": 9, + "row": 12395 + }, + { + "path": "whobpyt/depr/momi2023/pci.py", + "sha256": "7ddaed5fadd27b6b7d2c5ddb658016e01b19327889378a687919d87678fb470a", + "language": "Python", + "lines": 589, + "truncated": false, + "block": 9, + "row": 11861 + }, + { + "path": "whobpyt/depr/momi2025/__init__.py", + "sha256": "4bcf13fd8a777bb6e7472e814ce55630a9b17e542d1ea103336beab81045a378", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6082 + }, + { + "path": "whobpyt/depr/momi2025/jansen_rit.py", + "sha256": "c8b5afc4f95caf4a68c3d83733630b6cd7a0375ca047818a995cefb62212d2ae", + "language": "Python", + "lines": 1617, + "truncated": false, + "block": 9, + "row": 12565 + }, + { + "path": "whobpyt/depr/objective.py", + "sha256": "4e1e1319d4ee94c6e60532c8f0b0f5352fa364585839a276b2e89c66493a44b7", + "language": "Python", + "lines": 242, + "truncated": false, + "block": 9, + "row": 10867 + }, + { + "path": "whobpyt/depr/viz.py", + "sha256": "03b015f8bc9609525feb532481cda7a0147d46ef94380cae3de9d4f18758ee03", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7384 + }, + { + "path": "whobpyt/functions/__init__.py", + "sha256": "401a8613308a44768a2879d33846cee3ae1205e7ba7d870651a052f44fc63d9f", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 9, + "row": 6131 + }, + { + "path": "whobpyt/functions/arg_type_check.py", + "sha256": "a82ddb60c4fb3f322308d17574f79427108b71d189482dfe2184b460cc01f69d", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 7494 + }, + { + "path": "whobpyt/functions/pytorch_funs.py", + "sha256": "9064d1032e64fb166f500f2fcacecf96a552a9c51cc3e3e1628c5c89c498c567", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6440 + }, + { + "path": "whobpyt/models/__init__.py", + "sha256": "75cbe3e42f44d85d8a0ac1993c10677107ff12f549002d6a4209f20fc3f8644c", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6083 + }, + { + "path": "whobpyt/models/jansen_rit/__init__.py", + "sha256": "24dcfa58fc359935671de6138ff2c5e2f35ebb4f7408ddf1abb02515b03d9c82", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6137 + }, + { + "path": "whobpyt/models/jansen_rit/jansen_rit.py", + "sha256": "64a3c256b143d5edcc2d0977feb1ac8ca3ded834be2b4cb98f687736ab954d52", + "language": "Python", + "lines": 569, + "truncated": false, + "block": 9, + "row": 11904 + }, + { + "path": "whobpyt/optimization/__init__.py", + "sha256": "08e638383056d088eff8ad712b61060dec3b95db9ae5a514105091c31bd4227a", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6437 + }, + { + "path": "whobpyt/optimization/cost_FC.py", + "sha256": "b218619b696bb737c634111d65934920a986c73a8642a8cb071affd2331dad4d", + "language": "Python", + "lines": 198, + "truncated": false, + "block": 9, + "row": 10560 + }, + { + "path": "whobpyt/optimization/cost_Mean.py", + "sha256": "bf79120abdd34972775404fa05dfa07a4958ca07c8f426d0c28f5cdc736b0c38", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 8476 + }, + { + "path": "whobpyt/optimization/cost_PSD.py", + "sha256": "2b96d5f66caf2e4982e95b3e14e074ded7484a7165ffe6edce4b72da0df9e265", + "language": "Python", + "lines": 275, + "truncated": false, + "block": 9, + "row": 11152 + }, + { + "path": "whobpyt/optimization/cost_TS.py", + "sha256": "5f78804bd97ef5b1346c3c155ba09f8143a8e8179e539c9d43e144190cd01ccb", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7246 + }, + { + "path": "whobpyt/optimization/custom_cost_JR.py", + "sha256": "a86c0f4fd6a4aae93ad6351858f7e25e038c3a7c6a64c891106ffdcae850132f", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7172 + }, + { + "path": "whobpyt/optimization/custom_cost_LIN.py", + "sha256": "f3118dcf2ba2c1d5f525dd9a48a878314673896b519c1aed7b004bc46b88516c", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7814 + }, + { + "path": "whobpyt/optimization/custom_cost_RWW.py", + "sha256": "eec833a76dbc273e43d951c4e8f4519b0db7b5c0bd2c7151db106d48e057007b", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7508 + }, + { + "path": "whobpyt/optimization/custom_cost_mmRWW2.py", + "sha256": "16e316818abd1d06af8243147e3e1eb925ea812cbbcd17f587afefbb8c2894a8", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 8360 + }, + { + "path": "whobpyt/run/__init__.py", + "sha256": "50d7b197dbe241172c178d6471ee36840421631fd3f765254a79e0d4ab35f454", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6372 + }, + { + "path": "whobpyt/run/batch_fitting.py", + "sha256": "7b04f5f9cc03e135d5ca2f6bb2f073f89566e7c49bab974f8609d3ddb3ddba02", + "language": "Python", + "lines": 144, + "truncated": false, + "block": 9, + "row": 9783 + }, + { + "path": "whobpyt/run/custom_fitting.py", + "sha256": "df5166e4cc312715a53752c8cef65a657f6a5c06074ff523d9c303ae2ef70333", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 9, + "row": 10485 + }, + { + "path": "whobpyt/run/model_fitting.py", + "sha256": "13277ab447336b52bfdae4775dce90accec4fa1c496ee5af109abece56e63b75", + "language": "Python", + "lines": 420, + "truncated": false, + "block": 9, + "row": 11941 + }, + { + "path": "whobpyt/visualization/__init__.py", + "sha256": "7060dc5abb6bd23f46d5d703b3255316a529ef0db28feae7edfc43923ed415a4", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6354 + }, + { + "path": "whobpyt/visualization/plotting.py", + "sha256": "e23eebb8ba19550eba4fd9306dc37a14f64a64cf2811bf08b2f9bdee31385280", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 9, + "row": 8251 + } + ] +} \ No newline at end of file diff --git a/manifests/8e/github.com__mahdi-bashiri__wmh-normal-abnormal-segmentation.json b/manifests/8e/github.com__mahdi-bashiri__wmh-normal-abnormal-segmentation.json new file mode 100644 index 0000000000000000000000000000000000000000..e8f46ddc824219625058ed09dddc80faeb6d1d35 --- /dev/null +++ b/manifests/8e/github.com__mahdi-bashiri__wmh-normal-abnormal-segmentation.json @@ -0,0 +1,120 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/mahdi-bashiri/wmh-normal-abnormal-segmentation", + "url": "https://github.com/Mahdi-Bashiri/wmh-normal-abnormal-segmentation", + "host": "github.com", + "commit": "1f819ef2ebcb32f9062cd1aa09c20430351b7277", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "7377226fb135a687b994b72bd3b447324d4cb08c2581a8602398e5d8c8b86c90", + "language": "License", + "lines": 21, + "truncated": false, + "block": 6, + "row": 1591 + }, + { + "path": "README.md", + "sha256": "d3cbe4cf93adfc8053cd8da3e4b1aa67d02d591fd2528c82784293a69e44875d", + "language": "Text", + "lines": 451, + "truncated": false, + "block": 9, + "row": 14739 + }, + { + "path": "download_models.py", + "sha256": "13629af0372071fe273633a494e641c7321f641a31c4c714fe47c3660f7f167e", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7873 + }, + { + "path": "download_specific_models.py", + "sha256": "d6d12611b1702c5ca5944aac675784d448f64351b55234456e052f91b123a3df", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 9501 + }, + { + "path": "setup_dirs.sh", + "sha256": "3bdfb682745c7bd6e832622a2d918793b73c42af4427809be7dcbaa825720b5e", + "language": "Shell", + "lines": 36, + "truncated": false, + "block": 9, + "row": 14157 + }, + { + "path": "src/inference/wmh_leverage_normal_inference.py", + "sha256": "93668db21979fdacf2d2f4ce88f56903c68bc4c89cdedfb087b31ab4a7234bb3", + "language": "Python", + "lines": 1621, + "truncated": false, + "block": 9, + "row": 12593 + }, + { + "path": "src/models/attention_unet.py", + "sha256": "5ea2666ca3ed79689840990abc448e1ab341806824d0650f8d5fbe5be518ad9a", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8820 + }, + { + "path": "src/models/deeplabv3plus.py", + "sha256": "647185c635596e344d6705e957c1d582251b48ae3702aaa7ea2bcd6a21909c33", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 9, + "row": 10799 + }, + { + "path": "src/models/transunet.py", + "sha256": "53076de869c8b906323e3a8acf3b722ada444fb80e31aa5eb31816852e003a61", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 9, + "row": 9690 + }, + { + "path": "src/models/transunet_L.py", + "sha256": "7e9026f301097d74f36799538fd2b565e730fe067d0c6dda8f7f06d7188eb6e4", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 9144 + }, + { + "path": "src/models/unet.py", + "sha256": "4d4202c48e10b0abb007830ddd96d9bd5574cd56a69a8ee837f87ddb18a9a90b", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8884 + }, + { + "path": "src/training/wmh_leverage_normal_training.py", + "sha256": "d8c0072d6c662122bfc0f3d1f390c48e9cc5f94fc9d7c4d86bc0683743ad22ab", + "language": "Python", + "lines": 1620, + "truncated": false, + "block": 9, + "row": 12592 + } + ] +} \ No newline at end of file diff --git a/manifests/8e/github.com__zqfang__gseapy.json b/manifests/8e/github.com__zqfang__gseapy.json new file mode 100644 index 0000000000000000000000000000000000000000..af59889f238b085823fed1a8de089d95f71fbb87 --- /dev/null +++ b/manifests/8e/github.com__zqfang__gseapy.json @@ -0,0 +1,354 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/zqfang/gseapy", + "url": "https://github.com/zqfang/gseapy", + "host": "github.com", + "commit": "6e6f0e29ce3b407a7fb19bc6a9a73ee0015263fa", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "ec6ef3ceb5d66ce0fcf2a7aa42d1473f0bc79103bf31162763613a318370109d", + "language": "License", + "lines": 29, + "truncated": false, + "block": 9, + "row": 2887 + }, + { + "path": "README.rst", + "sha256": "949e3629e641193e320cc008b4a5a438755ab39ca2b942d1667d8abd4373f92b", + "language": "Text", + "lines": 328, + "truncated": false, + "block": 9, + "row": 14720 + }, + { + "path": "docs/conf.py", + "sha256": "2b87e1a17d6dd5569435fd8f2f5537a33bb405a3d1494c6e74e4b82de250a419", + "language": "Python", + "lines": 296, + "truncated": false, + "block": 9, + "row": 10774 + }, + { + "path": "docs/gseapy_example.ipynb", + "sha256": "72856ef4fcf646b1caa1ba2bfc6d90cadbeca3e3044fb502961b1f69ea47a7d6", + "language": "Jupyter", + "lines": 895, + "truncated": false, + "block": 9, + "row": 2689 + }, + { + "path": "docs/singlecell_example.ipynb", + "sha256": "897a5e5b8a648f034bb5c1f67ab1e4238a26146a37036050ba324673ece9fdf7", + "language": "Jupyter", + "lines": 305, + "truncated": false, + "block": 9, + "row": 2423 + }, + { + "path": "gseapy/__init__.py", + "sha256": "81b470c47057c9303b1c7f3a299532fbd8f6179cda278ba85c29f91d69d65075", + "language": "Python", + "lines": 888, + "truncated": false, + "block": 9, + "row": 12329 + }, + { + "path": "gseapy/__main__.py", + "sha256": "35eb976ab111992acf5bd595cb2b7e59de571d733dec2c1d0e65ca0256c0afbc", + "language": "Python", + "lines": 1079, + "truncated": false, + "block": 9, + "row": 12262 + }, + { + "path": "gseapy/algorithm.py", + "sha256": "21ebdae700a04fae0fd3ebdd4f5c31aa6279739ccee84dc15fa699f5ed808da3", + "language": "Python", + "lines": 715, + "truncated": false, + "block": 9, + "row": 12185 + }, + { + "path": "gseapy/base.py", + "sha256": "bcc301ec9103f235ddb2ecc82a0ce0f1c92f6e745aacd1f8a2682fb494b9372a", + "language": "Python", + "lines": 1000, + "truncated": false, + "block": 9, + "row": 12384 + }, + { + "path": "gseapy/biomart.py", + "sha256": "d3dfe1e67ccf09681bb49ba1ed41016fad8ce98501b5c6e517b7ec1dc43fdd5d", + "language": "Python", + "lines": 540, + "truncated": false, + "block": 9, + "row": 11929 + }, + { + "path": "gseapy/enrichr.py", + "sha256": "210b21ae81cb40135e98f04342d61007da7e8e9546ef0e6d2157278ce07d4532", + "language": "Python", + "lines": 821, + "truncated": false, + "block": 9, + "row": 12286 + }, + { + "path": "gseapy/gsea.py", + "sha256": "82cf59f13cac2ed9de175ea2eb96d751391bcf034ee16a9b1db5ffa8a09bf57e", + "language": "Python", + "lines": 748, + "truncated": false, + "block": 9, + "row": 12246 + }, + { + "path": "gseapy/gsva.py", + "sha256": "e3adbf7d4d3946eb78bbc3681972cae39d7ee6523571d10e1bb2de712e3687b7", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 9, + "row": 8982 + }, + { + "path": "gseapy/msigdb.py", + "sha256": "2409c8274f6746f2ffccfd11f71e91d38b9fdf16735b96e8d3321d032d84ac6e", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 9, + "row": 8826 + }, + { + "path": "gseapy/parser.py", + "sha256": "3976434b19767b48a9a27705fdd80954daa303ecf2c591bbf97827378d660f81", + "language": "Python", + "lines": 220, + "truncated": false, + "block": 9, + "row": 10436 + }, + { + "path": "gseapy/plot.py", + "sha256": "1641e765f04512de0925e40657ef972e72a47605a73666a07f033565b1e9c7f6", + "language": "Python", + "lines": 1652, + "truncated": false, + "block": 9, + "row": 12547 + }, + { + "path": "gseapy/scipalette.py", + "sha256": "27712b4088cc1585bb3cac31c78dcac01b349e09bd9a260ff97386edfe04744d", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 9, + "row": 10133 + }, + { + "path": "gseapy/ssgsea.py", + "sha256": "3135bf81170da5d29f57bd292027b3cc42a01f38e5d1c33ad56a2e68a9a5f0eb", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 9, + "row": 9842 + }, + { + "path": "gseapy/stats.py", + "sha256": "a1060e80978bdfaa05c232055c29e1ad200928a945f3d794bdd55537b06033ef", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 9, + "row": 10042 + }, + { + "path": "gseapy/utils.py", + "sha256": "883367e3ed54e3a35fa2db4b99d8668fdbb6cc1348c410e1c031f181bc9e2de0", + "language": "Python", + "lines": 336, + "truncated": false, + "block": 9, + "row": 11031 + }, + { + "path": "setup.py", + "sha256": "f1c8a3f5a4c67eae4a702ea604cebfccb1a94ff4f81180613f4451f5c4e4e526", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7012 + }, + { + "path": "src/algorithm.rs", + "sha256": "53e8eedba91c343e4fafac70c5b2165c07cf3a5c76ea5a14c656bddaea398d63", + "language": "Rust", + "lines": 1007, + "truncated": false, + "block": 9, + "row": 13884 + }, + { + "path": "src/fgsea/es_calculation.rs", + "sha256": "4b8392851e61bf15fa5f2caa290ac6b17940512f93f45d5835afb47733ad9363", + "language": "Rust", + "lines": 204, + "truncated": false, + "block": 9, + "row": 13877 + }, + { + "path": "src/fgsea/fast_gsea.rs", + "sha256": "20f07a7e41b59e59bd906db687f9bd1ee7ce58fe5f9771e72638370e4721fafd", + "language": "Rust", + "lines": 530, + "truncated": false, + "block": 9, + "row": 13882 + }, + { + "path": "src/fgsea/fgsea_multilevel.rs", + "sha256": "da90739a5c220f358fb2dccc91f009c9fcc8f4dc094fbe2ab0775d52878b5ec9", + "language": "Rust", + "lines": 125, + "truncated": false, + "block": 9, + "row": 13874 + }, + { + "path": "src/fgsea/fgsea_multilevel_supplement.rs", + "sha256": "4555553739d285e2063ff9de8f6ed52cf1ac41c2cadb1202c988696ac668bd93", + "language": "Rust", + "lines": 765, + "truncated": false, + "block": 9, + "row": 13883 + }, + { + "path": "src/fgsea/mod.rs", + "sha256": "3848cc3f7e4788d7b6be1fc0a877a2acd830722cfbe4e2894aa45256502fab13", + "language": "Rust", + "lines": 124, + "truncated": false, + "block": 9, + "row": 13875 + }, + { + "path": "src/fgsea/util.rs", + "sha256": "2e5b2ace41fe7e8246447cdec3500c192f8a96d1adf5cbd54c25a76748e8efac", + "language": "Rust", + "lines": 150, + "truncated": false, + "block": 9, + "row": 13876 + }, + { + "path": "src/fgsea/validation_tests.rs", + "sha256": "e854a6e8cd5ca6011812e9aec100744c65dd3ac586c2d3ec71e3b76444f934a5", + "language": "Rust", + "lines": 195, + "truncated": false, + "block": 9, + "row": 13878 + }, + { + "path": "src/gsva.rs", + "sha256": "c5f262bf8cd93a567fa28d8070e668c95b0acde08d9c83eaaaee52b8c890a3ce", + "language": "Rust", + "lines": 405, + "truncated": false, + "block": 9, + "row": 13880 + }, + { + "path": "src/help.rs", + "sha256": "289058c57ae8b8e71b813055aacb33b1902a2a8e629bbd3f7d4a4dbf40d6d413", + "language": "Rust", + "lines": 92, + "truncated": false, + "block": 9, + "row": 13873 + }, + { + "path": "src/lib.rs", + "sha256": "5bae6d32750009b666b82a3f61a3412371228793780b6a85e9a9f5b05c737519", + "language": "Rust", + "lines": 428, + "truncated": false, + "block": 9, + "row": 13881 + }, + { + "path": "src/stats.rs", + "sha256": "2ec53b1bf7a35be8eaa9ef99c475968afe7d64083a4f0f3239827b84dec9f738", + "language": "Rust", + "lines": 1713, + "truncated": false, + "block": 9, + "row": 13885 + }, + { + "path": "src/utils.rs", + "sha256": "e89598e75f1964f049357a986db02f1540ced80c6edf3769baf5848c9e1b5f34", + "language": "Rust", + "lines": 312, + "truncated": false, + "block": 9, + "row": 13879 + }, + { + "path": "tests/test.ssgsea.R.r", + "sha256": "720993231e61e6b2e284d1c2138b3a8e14eaa33a177f0d4c18bf2d895c1f1b35", + "language": "R", + "lines": 96, + "truncated": false, + "block": 9, + "row": 13129 + }, + { + "path": "tests/test_commands.py", + "sha256": "120f6544a0ec264d73536b895ba72a173a547e34097e0821f188b3699198750f", + "language": "Python", + "lines": 1616, + "truncated": false, + "block": 9, + "row": 12525 + }, + { + "path": "tests/test_enrichr_combined_score.py", + "sha256": "acb6c9712c8115e15b3ef20de9a2b3f19c205cccefd266fd6ebb4e002a8e7514", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 7996 + }, + { + "path": "tests/test_threads.py", + "sha256": "32b6b99d2cf45f42a36135b9acb1dc3eeec20fb7b87c146213b48a35b7cbbde4", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 9, + "row": 10176 + } + ] +} \ No newline at end of file diff --git a/manifests/8f/zenodo__18976379.json b/manifests/8f/zenodo__18976379.json new file mode 100644 index 0000000000000000000000000000000000000000..a2d6211102ed92031025f0733ae809ec7aeed2fb --- /dev/null +++ b/manifests/8f/zenodo__18976379.json @@ -0,0 +1,1263 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18976379", + "url": "https://doi.org/10.5281/zenodo.18976379", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "2d77824e43356c0fba3a8c9be7fd1bd55d201e62cf3063daae28279ce5436f1b", + "language": "Text", + "lines": 55, + "truncated": false, + "block": 9, + "row": 14545 + }, + { + "path": "downstream_task/mcq/data_utils.py", + "sha256": "1bf815e3fa7892dc59834933db0190d2ef2406e24163f1f48b5849c75b3dffd1", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 9, + "row": 9883 + }, + { + "path": "downstream_task/mcq/eval_utils.py", + "sha256": "494c2ef582ad2ce73e741849abf906cf984b47ca1207609b9243e264f44ab48e", + "language": "Python", + "lines": 264, + "truncated": false, + "block": 9, + "row": 10639 + }, + { + "path": "downstream_task/mcq/evaluate_med.py", + "sha256": "64136849e1d61f50894f90da6849beea19fffa536069a58592350df20aab7357", + "language": "Python", + "lines": 328, + "truncated": false, + "block": 9, + "row": 11162 + }, + { + "path": "downstream_task/mcq/main_eval_only.py", + "sha256": "1dbad81a74e78ac1d3ce4adc56d06ebff1eea558c5fe92a25ef91916289c9ef6", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 9101 + }, + { + "path": "downstream_task/mri_enhancement/functions/ckpt_util.py", + "sha256": "7a9d0a26dbd8a753a128c673a6de236271f8749d2da874e5ad3152e6034b2d0e", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8628 + }, + { + "path": "downstream_task/mri_enhancement/guided_diffusion/arch_unet.py", + "sha256": "c4421e1ecd8c22ef449bad92c3c854a2786483608752dfea2682b2f0b51d656f", + "language": "Python", + "lines": 251, + "truncated": false, + "block": 9, + "row": 10710 + }, + { + "path": "downstream_task/mri_enhancement/guided_diffusion/diffusion.py", + "sha256": "07a73c4bfd6579080586f33e0943e650bd43defd7514816671d8884ba81f2b2f", + "language": "Python", + "lines": 640, + "truncated": false, + "block": 9, + "row": 12071 + }, + { + "path": "downstream_task/mri_enhancement/guided_diffusion/diffusion_DDNM.py", + "sha256": "eb02c996b2e37e40a52c71d500f0075bf815105b7a17b9f698075f09452d8f64", + "language": "Python", + "lines": 612, + "truncated": false, + "block": 9, + "row": 12010 + }, + { + "path": "downstream_task/mri_enhancement/guided_diffusion/fp16_util.py", + "sha256": "739d3a3c40692aaa076de7a469ce8037f0d5a3e060bb969f24e7e3271fd9b239", + "language": "Python", + "lines": 236, + "truncated": false, + "block": 9, + "row": 10398 + }, + { + "path": "downstream_task/mri_enhancement/guided_diffusion/logger.py", + "sha256": "615d9cb63dd2cfe017ac424bcc64340257c83eb9cb8e6b6913df4bd55831c1c0", + "language": "Python", + "lines": 495, + "truncated": false, + "block": 9, + "row": 11334 + }, + { + "path": "downstream_task/mri_enhancement/guided_diffusion/models.py", + "sha256": "9ef760c426b51f6a345d0c750dd0dae04b8ad8b308d5b79b1d10c500c59080bf", + "language": "Python", + "lines": 341, + "truncated": false, + "block": 9, + "row": 11219 + }, + { + "path": "downstream_task/mri_enhancement/guided_diffusion/nn.py", + "sha256": "d9547fb22b421a16dc079cb82a9d98630100b5e1b2a710d343f4d3f90b8661f3", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 9, + "row": 9465 + }, + { + "path": "downstream_task/mri_enhancement/guided_diffusion/script_util.py", + "sha256": "ed5f78bcf449b216bd6e3aebb77f0a4940df9c78308006f5de835b0ee2ff3498", + "language": "Python", + "lines": 554, + "truncated": false, + "block": 9, + "row": 11555 + }, + { + "path": "downstream_task/mri_enhancement/guided_diffusion/test.py", + "sha256": "dc095a9e9db86d1ca81a6908e25395e0bba3d0ad114a28e33af08564d8a969ba", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6806 + }, + { + "path": "downstream_task/mri_enhancement/guided_diffusion/test_lambda_t.py", + "sha256": "f2b045d57df331ca5b9534103ed0ffdf84902937fda235312ec4f28e9c96377c", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 9, + "row": 7832 + }, + { + "path": "downstream_task/mri_enhancement/guided_diffusion/unet.py", + "sha256": "32d0929411f94ae12a87d07233803fa1959c6e928ab9b8dc916fb2aaed55f312", + "language": "Python", + "lines": 895, + "truncated": false, + "block": 9, + "row": 12250 + }, + { + "path": "downstream_task/mri_enhancement/main.py", + "sha256": "dd645eddc9bed00eca6e62917ed024dfdc0b355c453c1e84c8abfa47b63cbec1", + "language": "Python", + "lines": 219, + "truncated": false, + "block": 9, + "row": 9967 + }, + { + "path": "downstream_task/mri_enhancement/script_5T.py", + "sha256": "adf6bcfd43d32d02b5b821084f9e2b589df5448eaebb9a462956508ac5d62c3a", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 9, + "row": 6531 + }, + { + "path": "downstream_task/mri_translation/backbones/__init__.py", + "sha256": "b4d83f5cadbd1300480ce723b2bb572a7f5fff13017473bfd8d5c95969fa347f", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6750 + }, + { + "path": "downstream_task/mri_translation/backbones/dense_layer.py", + "sha256": "4ac22fbdb7c700dce6e38b71484cb1d1ecc510dd8631545f8f6ae37da27fd744", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 9, + "row": 8659 + }, + { + "path": "downstream_task/mri_translation/backbones/discriminator.py", + "sha256": "2e4985f24cbc701f395e760123c63aa42eb390d7ed8ce14f5863e32e20ebdcee", + "language": "Python", + "lines": 240, + "truncated": false, + "block": 9, + "row": 10136 + }, + { + "path": "downstream_task/mri_translation/backbones/generator_resnet.py", + "sha256": "f0d76cfe441aea8d0811b53d56685c6bec873a2e4a28f4ac9884fe2de9fbf37f", + "language": "Python", + "lines": 317, + "truncated": false, + "block": 9, + "row": 11382 + }, + { + "path": "downstream_task/mri_translation/backbones/im2im.py", + "sha256": "bb8395f25ce6a40813c9b9b3b538ae3817e7676aa7d6c7e514b3ecbe3f0d2b1a", + "language": "Python", + "lines": 182, + "truncated": false, + "block": 9, + "row": 10558 + }, + { + "path": "downstream_task/mri_translation/backbones/layers.py", + "sha256": "154d47875db4a447cc57c8e4d78cf2aba33cbffd5034012a2a6de492ed251357", + "language": "Python", + "lines": 612, + "truncated": false, + "block": 9, + "row": 11869 + }, + { + "path": "downstream_task/mri_translation/backbones/layerspp.py", + "sha256": "aebeb04e792797639003a788556ef9810a03dde64eff6be977db5b3beb12f263", + "language": "Python", + "lines": 372, + "truncated": false, + "block": 9, + "row": 11163 + }, + { + "path": "downstream_task/mri_translation/backbones/ncsnpp_generator_adagn.py", + "sha256": "0632e65e6f56408fee102b63fe150f63ac4ca790acbc5ff71ed790aa17f763c2", + "language": "Python", + "lines": 421, + "truncated": false, + "block": 9, + "row": 11463 + }, + { + "path": "downstream_task/mri_translation/backbones/up_or_down_sampling.py", + "sha256": "5ae224f98645d6a4e92c76acdd4d1711c1ae46ada1c07997ff1f356f5bf619ac", + "language": "Python", + "lines": 262, + "truncated": false, + "block": 9, + "row": 10657 + }, + { + "path": "downstream_task/mri_translation/backbones/utils.py", + "sha256": "3a0ae22b97196970fd8e71046ce39fc6e2f6b1127318a1aeb3715fc3cf51b791", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 8612 + }, + { + "path": "downstream_task/mri_translation/dataset.py", + "sha256": "1f29e88498bbfa2d12da38f5cdf907a5894eac809c1f9feaa4818cca766fdac1", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7373 + }, + { + "path": "downstream_task/mri_translation/test.py", + "sha256": "ea2e62ba69deb60ef0291c81b013c40a968d640e6a8b51c97af1c1212c7d52f6", + "language": "Python", + "lines": 344, + "truncated": false, + "block": 9, + "row": 11402 + }, + { + "path": "downstream_task/mri_translation/train.py", + "sha256": "d7cd8a1b118b285930bb8e483afa76a8289051b3a02d7d046e1421014d05f35e", + "language": "Python", + "lines": 866, + "truncated": false, + "block": 9, + "row": 12451 + }, + { + "path": "downstream_task/mri_translation/utils/EMA.py", + "sha256": "cad6212e494696d0ef2535f2cb111a224678359ff4354ecd44cd105d54abeacd", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 8705 + }, + { + "path": "downstream_task/mri_translation/utils/op/__init__.py", + "sha256": "d3bdebb6b1ea35ab8e7dd14af32919f11ae630ab9154d4c84f839397b98b2bf6", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 9, + "row": 6347 + }, + { + "path": "downstream_task/mri_translation/utils/op/fused_act.py", + "sha256": "10fcc711cc9ce57a1a5fe481d6728d721a1a512c866173ffc4a11e44f6dd88a9", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 9, + "row": 8577 + }, + { + "path": "downstream_task/mri_translation/utils/op/fused_bias_act.cpp", + "sha256": "feedd701ca6bb0f6bc0feab2185c0b8791503cc9ab555ccc0480be64386bc529", + "language": "C++", + "lines": 28, + "truncated": false, + "block": 9, + "row": 199 + }, + { + "path": "downstream_task/mri_translation/utils/op/fused_bias_act_kernel.cu", + "sha256": "8e52725cfa0e5c41a5bdf385b0c2c3c8cf57af51f4608a406a5b5ae6e1676b25", + "language": "CUDA", + "lines": 101, + "truncated": false, + "block": 9, + "row": 1918 + }, + { + "path": "downstream_task/mri_translation/utils/op/upfirdn2d.cpp", + "sha256": "3f1a41d2ce8581872209b770439293a6fcb26ca323c09a4477a9fd43bc0c987e", + "language": "C++", + "lines": 31, + "truncated": false, + "block": 9, + "row": 212 + }, + { + "path": "downstream_task/mri_translation/utils/op/upfirdn2d.py", + "sha256": "0eaf47f96f7716b1e400509ddc93c4f9bb8fc16e09ad98b9a5aec2273d549834", + "language": "Python", + "lines": 225, + "truncated": false, + "block": 9, + "row": 10018 + }, + { + "path": "downstream_task/mri_translation/utils/op/upfirdn2d_kernel.cu", + "sha256": "d0cec1d2a941d913aa24f6295ba15a2a9fc5a0f3d185433c7ccc1703d28edbdd", + "language": "CUDA", + "lines": 371, + "truncated": false, + "block": 9, + "row": 1937 + }, + { + "path": "downstream_task/mri_translation/utils/utils.py", + "sha256": "80ba5c5cd894fc9df6c7bfa39a027c67a648c7564b9ad71c8688af2e190c5c38", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 7010 + }, + { + "path": "downstream_task/report_gen/UNet2d_condition.py", + "sha256": "daec3b7c3eb2381e258547ecf6b71ec648f7fd614468e5c024f035a1c463e94c", + "language": "Python", + "lines": 1535, + "truncated": false, + "block": 9, + "row": 12594 + }, + { + "path": "downstream_task/report_gen/mdataset.py", + "sha256": "2e7583e7b27f370cacbd656e2f3974584b2be4df2d315b9a75d7fa02cd1dd3b7", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 9, + "row": 10823 + }, + { + "path": "downstream_task/report_gen/metrics/__init__.py", + "sha256": "c47795630c6827c70f85e317ec90e7dbcc4d2ce2534c9b6d6f00d102c7b3d3c7", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6359 + }, + { + "path": "downstream_task/report_gen/metrics/basic.py", + "sha256": "8f133f1d44ca780945fae67af1764ecf114b8d6f5ce3d8d111e883427060a775", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 9, + "row": 9745 + }, + { + "path": "downstream_task/report_gen/metrics/caption_modules/__init__.py", + "sha256": "336daa4a1895e6fc801cdfa2dc0ac2575ea546531ade8ebf7127db5b4dc5c529", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6356 + }, + { + "path": "downstream_task/report_gen/metrics/caption_modules/bleu/__init__.py", + "sha256": "d02e91fe125b82e6e5f0642b897f7439094506d06f32771b40d00170deb8eae1", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6092 + }, + { + "path": "downstream_task/report_gen/metrics/caption_modules/bleu/bleu.py", + "sha256": "6565b83e55e04e06a8965e04f1f9b131244ed592c2ac90680448c48c522284c3", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7291 + }, + { + "path": "downstream_task/report_gen/metrics/caption_modules/bleu/bleu_scorer.py", + "sha256": "1f8103c557d25a56235a64dd2be4792d836bcf6e4fe2e86a7ae6881015891dd4", + "language": "Python", + "lines": 266, + "truncated": false, + "block": 9, + "row": 10586 + }, + { + "path": "downstream_task/report_gen/metrics/caption_modules/cider/__init__.py", + "sha256": "d02e91fe125b82e6e5f0642b897f7439094506d06f32771b40d00170deb8eae1", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6092 + }, + { + "path": "downstream_task/report_gen/metrics/caption_modules/cider/cider.py", + "sha256": "d41a8c78226648e014ab593bac53f8ac603089ebed2f17d3709627a55378f984", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7631 + }, + { + "path": "downstream_task/report_gen/metrics/caption_modules/cider/cider_scorer.py", + "sha256": "70f220159026b4f4133ec40f6b46dcd51b5e9abae9b8bfd72d5a71a95bdbb07c", + "language": "Python", + "lines": 193, + "truncated": false, + "block": 9, + "row": 10349 + }, + { + "path": "downstream_task/report_gen/metrics/captions.py", + "sha256": "21448bbe7c6ef980217c18bd4c8301abcafb33a23c3bf915a12c20bd3c0a0d64", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 9, + "row": 9369 + }, + { + "path": "downstream_task/report_gen/metrics/multiclass.py", + "sha256": "cc1e41417f1fdfe139f355097df53da4254ba8bdf15b90238f66a3bcb3f37ace", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7712 + }, + { + "path": "downstream_task/report_gen/metrics/multilabel.py", + "sha256": "fc01e4ab3d079981963de766b9678c25940a3e767b2262982a1cbccfbc6aebfd", + "language": "Python", + "lines": 235, + "truncated": false, + "block": 9, + "row": 10574 + }, + { + "path": "downstream_task/report_gen/modules/__init__.py", + "sha256": "5e4fdfadfe2166fcb34b93e7bc0cbcae09aeb0bbf7b0a96a8e414e1529f6aa59", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6357 + }, + { + "path": "downstream_task/report_gen/modules/bert.py", + "sha256": "72279793a7ceb22fa905a9151b6ce4dd1513ed139de66e219aa20cd25b78ae62", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8993 + }, + { + "path": "downstream_task/report_gen/modules/build.py", + "sha256": "00789864893bc0e6df9205d81de2af9a980bf5d6a021d6b2a444d8ab9e7d0fa8", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 10019 + }, + { + "path": "downstream_task/report_gen/modules/caption_modules.py", + "sha256": "ab58a83df17602d2e1d56af3926ca4a4b11b17673cf826780d9ed468c42421a0", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 9, + "row": 9827 + }, + { + "path": "downstream_task/report_gen/modules/embedding.py", + "sha256": "97019de7ffe11801dd180a3b15b8d475e04f29647b6c2cd18ae549d7dac81517", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8895 + }, + { + "path": "downstream_task/report_gen/modules/fusion_modules.py", + "sha256": "1901d4daceaac2429bc2828a80c21fddcd6285e713ea8c6d5ff5cdc4173736bd", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 10334 + }, + { + "path": "downstream_task/report_gen/modules/graph_modules.py", + "sha256": "c7b5143e04cf0fdf301012c1cb1e5ef6d8ddfdc64a4952f1553a8635509ffe85", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 9, + "row": 10978 + }, + { + "path": "downstream_task/report_gen/modules/label_corr_modules.py", + "sha256": "56ef4eb1c069efafda04d6e06783e617b346c043101a48360ea7527e9ad511f7", + "language": "Python", + "lines": 369, + "truncated": false, + "block": 9, + "row": 11583 + }, + { + "path": "downstream_task/report_gen/modules/mae.py", + "sha256": "fc421360ab00253eba6a2b2977e030bc77f33e5a489b98abef39ed538deadf1e", + "language": "Python", + "lines": 499, + "truncated": false, + "block": 9, + "row": 11863 + }, + { + "path": "downstream_task/report_gen/modules/multi_modal_fusion_modules.py", + "sha256": "27038a3443d021ebff583d6e45b2aa438e080e269e196d8c66a4c00c30c04f51", + "language": "Python", + "lines": 375, + "truncated": false, + "block": 9, + "row": 11569 + }, + { + "path": "downstream_task/report_gen/modules/pooler.py", + "sha256": "29b0e7cad73e99fbe0cbcf1f56df6839d37b523c5d3078fe4e2d5f10c1441621", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8638 + }, + { + "path": "downstream_task/report_gen/modules/pos_embed.py", + "sha256": "1d16d0720128a7cdfed2ab66dd9b17a7f990b625e4d2d2d37de770cbe41fc504", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 9179 + }, + { + "path": "downstream_task/report_gen/modules/structured_encoder.py", + "sha256": "01e6a4bf55ea34bb53b1f2366b5cb5edac585ec8d3b9f831ee81248b911ce345", + "language": "Python", + "lines": 235, + "truncated": false, + "block": 9, + "row": 10690 + }, + { + "path": "downstream_task/report_gen/modules/textual_encoder.py", + "sha256": "1fe44dcda75b9594a7f18a9230fe4e7888d307991e01067c41ada4fa81702f72", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 9794 + }, + { + "path": "downstream_task/report_gen/modules/vision_transformer.py", + "sha256": "09f1779de798ccdc36c668c353b718d67f24998963c2a90f7007c20c5a6f1aa0", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6737 + }, + { + "path": "downstream_task/report_gen/modules/visual_encoder.py", + "sha256": "61dec746e084deb3a54cced55c170b19224863d7cc106116f350402f383ac8eb", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7886 + }, + { + "path": "downstream_task/report_gen/modules/vit.py", + "sha256": "0bb79ee226a00be0f002fd9ef151d52da3b5fcc233bec45bda43de941cf1e2de", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 9409 + }, + { + "path": "downstream_task/report_gen/pretrain.py", + "sha256": "d98b5a773786df7f7e946fdb170bc5f3334cb8c26f18de79631ef9799365bbc4", + "language": "Python", + "lines": 424, + "truncated": false, + "block": 9, + "row": 11884 + }, + { + "path": "downstream_task/report_gen/pretrain_model.py", + "sha256": "f8ee3f66fff0ee99d9dfbd1ad66f01273f8718fc890ef3f475a273db5d87f816", + "language": "Python", + "lines": 960, + "truncated": false, + "block": 9, + "row": 12453 + }, + { + "path": "downstream_task/report_gen/run.sh", + "sha256": "4369420d3d4663a3ef74014f347a9e3c528f9160118f6f4f3a32e9202d05a3f3", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14026 + }, + { + "path": "downstream_task/report_gen/utils/__init__.py", + "sha256": "a65c38938bce3b743274e66e9d1ac021d996c6694f7e009ef5b45a67569d53b3", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6358 + }, + { + "path": "downstream_task/report_gen/utils/basic.py", + "sha256": "154229d0b573fc90aedb031c20c1923c2f49012a553c1c7b2c8353d30ae32472", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 8581 + }, + { + "path": "downstream_task/report_gen/utils/link.py", + "sha256": "1ce400626a397101e2b7edffff33320be9af1241b5e48a894f8601e03f1fa56d", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 8589 + }, + { + "path": "downstream_task/report_gen/utils/logger.py", + "sha256": "a311452b1829c1fe79f0f7645a32fe151feeaa3515d4a4ebdcfec4953b473461", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 9, + "row": 9668 + }, + { + "path": "downstream_task/report_gen/utils/models.py", + "sha256": "dd68787b47adcab930030bafbac690c745a02d7c10fc7a8472feb6e750f2208b", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 9471 + }, + { + "path": "downstream_task/report_gen/utils/optim_utils.py", + "sha256": "ce8e1b5ee266f04f99e6cf307c15df9050a49fe04dd0c9d95ff132d58a782eb2", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 9, + "row": 8907 + }, + { + "path": "downstream_task/report_gen/utils/preprocess.py", + "sha256": "2f2fbfafe0e029c6b272d3d03fb0d7d006f5e922ade452a9ad89c970bfac6272", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 7969 + }, + { + "path": "downstream_task/report_gen/utils/scheduler.py", + "sha256": "e66d0d52cd85db7711d0e2fa0b765b1c86297c7cf2002165ddcdaa607337f80d", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7544 + }, + { + "path": "downstream_task/report_gen/utils/visualization.py", + "sha256": "ade0310f1e61220dd4d7aaac1132a094375e615e464bc353af25325daabd9991", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7890 + }, + { + "path": "downstream_task/seg/fea_ex.py", + "sha256": "6807039874aeba8ba882780bf16ddc0ec263474f7f10fa1f0e38983eead3fc32", + "language": "Python", + "lines": 173, + "truncated": false, + "block": 9, + "row": 10037 + }, + { + "path": "downstream_task/seg/main.py", + "sha256": "da4f5fe281bd3edeac492a3f1c6dd53b55ccadd7cd21e06ae68d4dbfc81960f0", + "language": "Python", + "lines": 287, + "truncated": false, + "block": 9, + "row": 11062 + }, + { + "path": "downstream_task/seg/mmodels/pixel_classifier.py", + "sha256": "e9d37b36e1d7f2eeeb62f64368c9019c473338d9f0c709679504571f9cea57fd", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 9, + "row": 10115 + }, + { + "path": "downstream_task/seg/util.py", + "sha256": "4dfa010d3fed17bddde7d8327d7cbc7a36a93f19e297dca5457e1d9b7e53b5bf", + "language": "Python", + "lines": 252, + "truncated": false, + "block": 9, + "row": 10795 + }, + { + "path": "pretrain_code/stage1/generate.py", + "sha256": "fd4d6c3d46656222306c25ca31281351f5c02400e9c1cfb711fcf2f2f420eaaf", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 9, + "row": 9346 + }, + { + "path": "pretrain_code/stage1/prtrain_ddpm.py", + "sha256": "98bfa9055ec58916a25bd08159c313a8622c9d2b71f0e90e475cd17ca239ca18", + "language": "Python", + "lines": 194, + "truncated": false, + "block": 9, + "row": 10301 + }, + { + "path": "pretrain_code/stage1/utils/pipeline_ddpm.py", + "sha256": "2273fd299cf100913ebec55733bb17749f36f192773a4a27952a85c47c6be9b9", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 9, + "row": 9610 + }, + { + "path": "pretrain_code/stage1/utils/util.py", + "sha256": "eedde0ac62c812686140344eee4f2d0c8ee8b89e7d60a4c4bac2ad30f2645608", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9408 + }, + { + "path": "pretrain_code/stage2/UNet2d_condition.py", + "sha256": "daec3b7c3eb2381e258547ecf6b71ec648f7fd614468e5c024f035a1c463e94c", + "language": "Python", + "lines": 1535, + "truncated": false, + "block": 9, + "row": 12594 + }, + { + "path": "pretrain_code/stage2/mdataset.py", + "sha256": "2e7583e7b27f370cacbd656e2f3974584b2be4df2d315b9a75d7fa02cd1dd3b7", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 9, + "row": 10823 + }, + { + "path": "pretrain_code/stage2/metrics/__init__.py", + "sha256": "c47795630c6827c70f85e317ec90e7dbcc4d2ce2534c9b6d6f00d102c7b3d3c7", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6359 + }, + { + "path": "pretrain_code/stage2/metrics/basic.py", + "sha256": "8f133f1d44ca780945fae67af1764ecf114b8d6f5ce3d8d111e883427060a775", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 9, + "row": 9745 + }, + { + "path": "pretrain_code/stage2/metrics/caption_modules/__init__.py", + "sha256": "336daa4a1895e6fc801cdfa2dc0ac2575ea546531ade8ebf7127db5b4dc5c529", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6356 + }, + { + "path": "pretrain_code/stage2/metrics/caption_modules/bleu/__init__.py", + "sha256": "d02e91fe125b82e6e5f0642b897f7439094506d06f32771b40d00170deb8eae1", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6092 + }, + { + "path": "pretrain_code/stage2/metrics/caption_modules/bleu/bleu.py", + "sha256": "6565b83e55e04e06a8965e04f1f9b131244ed592c2ac90680448c48c522284c3", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7291 + }, + { + "path": "pretrain_code/stage2/metrics/caption_modules/bleu/bleu_scorer.py", + "sha256": "1f8103c557d25a56235a64dd2be4792d836bcf6e4fe2e86a7ae6881015891dd4", + "language": "Python", + "lines": 266, + "truncated": false, + "block": 9, + "row": 10586 + }, + { + "path": "pretrain_code/stage2/metrics/caption_modules/cider/__init__.py", + "sha256": "d02e91fe125b82e6e5f0642b897f7439094506d06f32771b40d00170deb8eae1", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6092 + }, + { + "path": "pretrain_code/stage2/metrics/caption_modules/cider/cider.py", + "sha256": "d41a8c78226648e014ab593bac53f8ac603089ebed2f17d3709627a55378f984", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7631 + }, + { + "path": "pretrain_code/stage2/metrics/caption_modules/cider/cider_scorer.py", + "sha256": "70f220159026b4f4133ec40f6b46dcd51b5e9abae9b8bfd72d5a71a95bdbb07c", + "language": "Python", + "lines": 193, + "truncated": false, + "block": 9, + "row": 10349 + }, + { + "path": "pretrain_code/stage2/metrics/captions.py", + "sha256": "21448bbe7c6ef980217c18bd4c8301abcafb33a23c3bf915a12c20bd3c0a0d64", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 9, + "row": 9369 + }, + { + "path": "pretrain_code/stage2/metrics/multiclass.py", + "sha256": "cc1e41417f1fdfe139f355097df53da4254ba8bdf15b90238f66a3bcb3f37ace", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7712 + }, + { + "path": "pretrain_code/stage2/metrics/multilabel.py", + "sha256": "fc01e4ab3d079981963de766b9678c25940a3e767b2262982a1cbccfbc6aebfd", + "language": "Python", + "lines": 235, + "truncated": false, + "block": 9, + "row": 10574 + }, + { + "path": "pretrain_code/stage2/modules/__init__.py", + "sha256": "5e4fdfadfe2166fcb34b93e7bc0cbcae09aeb0bbf7b0a96a8e414e1529f6aa59", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6357 + }, + { + "path": "pretrain_code/stage2/modules/bert.py", + "sha256": "72279793a7ceb22fa905a9151b6ce4dd1513ed139de66e219aa20cd25b78ae62", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8993 + }, + { + "path": "pretrain_code/stage2/modules/build.py", + "sha256": "00789864893bc0e6df9205d81de2af9a980bf5d6a021d6b2a444d8ab9e7d0fa8", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 10019 + }, + { + "path": "pretrain_code/stage2/modules/caption_modules.py", + "sha256": "ab58a83df17602d2e1d56af3926ca4a4b11b17673cf826780d9ed468c42421a0", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 9, + "row": 9827 + }, + { + "path": "pretrain_code/stage2/modules/embedding.py", + "sha256": "97019de7ffe11801dd180a3b15b8d475e04f29647b6c2cd18ae549d7dac81517", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8895 + }, + { + "path": "pretrain_code/stage2/modules/fusion_modules.py", + "sha256": "1901d4daceaac2429bc2828a80c21fddcd6285e713ea8c6d5ff5cdc4173736bd", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 10334 + }, + { + "path": "pretrain_code/stage2/modules/graph_modules.py", + "sha256": "c7b5143e04cf0fdf301012c1cb1e5ef6d8ddfdc64a4952f1553a8635509ffe85", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 9, + "row": 10978 + }, + { + "path": "pretrain_code/stage2/modules/label_corr_modules.py", + "sha256": "56ef4eb1c069efafda04d6e06783e617b346c043101a48360ea7527e9ad511f7", + "language": "Python", + "lines": 369, + "truncated": false, + "block": 9, + "row": 11583 + }, + { + "path": "pretrain_code/stage2/modules/mae.py", + "sha256": "fc421360ab00253eba6a2b2977e030bc77f33e5a489b98abef39ed538deadf1e", + "language": "Python", + "lines": 499, + "truncated": false, + "block": 9, + "row": 11863 + }, + { + "path": "pretrain_code/stage2/modules/multi_modal_fusion_modules.py", + "sha256": "27038a3443d021ebff583d6e45b2aa438e080e269e196d8c66a4c00c30c04f51", + "language": "Python", + "lines": 375, + "truncated": false, + "block": 9, + "row": 11569 + }, + { + "path": "pretrain_code/stage2/modules/pooler.py", + "sha256": "29b0e7cad73e99fbe0cbcf1f56df6839d37b523c5d3078fe4e2d5f10c1441621", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8638 + }, + { + "path": "pretrain_code/stage2/modules/pos_embed.py", + "sha256": "1d16d0720128a7cdfed2ab66dd9b17a7f990b625e4d2d2d37de770cbe41fc504", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 9179 + }, + { + "path": "pretrain_code/stage2/modules/structured_encoder.py", + "sha256": "01e6a4bf55ea34bb53b1f2366b5cb5edac585ec8d3b9f831ee81248b911ce345", + "language": "Python", + "lines": 235, + "truncated": false, + "block": 9, + "row": 10690 + }, + { + "path": "pretrain_code/stage2/modules/textual_encoder.py", + "sha256": "1fe44dcda75b9594a7f18a9230fe4e7888d307991e01067c41ada4fa81702f72", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 9794 + }, + { + "path": "pretrain_code/stage2/modules/vision_transformer.py", + "sha256": "09f1779de798ccdc36c668c353b718d67f24998963c2a90f7007c20c5a6f1aa0", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6737 + }, + { + "path": "pretrain_code/stage2/modules/visual_encoder.py", + "sha256": "61dec746e084deb3a54cced55c170b19224863d7cc106116f350402f383ac8eb", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7886 + }, + { + "path": "pretrain_code/stage2/modules/vit.py", + "sha256": "0bb79ee226a00be0f002fd9ef151d52da3b5fcc233bec45bda43de941cf1e2de", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 9409 + }, + { + "path": "pretrain_code/stage2/pretrain.py", + "sha256": "cd1603f085b80ed6d1fa514b2347e6b8844977fdb9df6ce9172bf8b526c1ebd0", + "language": "Python", + "lines": 528, + "truncated": false, + "block": 9, + "row": 12100 + }, + { + "path": "pretrain_code/stage2/pretrain_model.py", + "sha256": "f8ee3f66fff0ee99d9dfbd1ad66f01273f8718fc890ef3f475a273db5d87f816", + "language": "Python", + "lines": 960, + "truncated": false, + "block": 9, + "row": 12453 + }, + { + "path": "pretrain_code/stage2/run.sh", + "sha256": "3a89b4225b7d642cac2ca8ae441f51107bee7aa8948e2dbe95c8cc2cc2a94aef", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14033 + }, + { + "path": "pretrain_code/stage2/run_zero_shot_eval.sh", + "sha256": "4e88c7460e9249ac5aa1238268b9383f9ae75d0a693e1d31504123af0edd0cbb", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14028 + }, + { + "path": "pretrain_code/stage2/utils/__init__.py", + "sha256": "a65c38938bce3b743274e66e9d1ac021d996c6694f7e009ef5b45a67569d53b3", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6358 + }, + { + "path": "pretrain_code/stage2/utils/basic.py", + "sha256": "154229d0b573fc90aedb031c20c1923c2f49012a553c1c7b2c8353d30ae32472", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 8581 + }, + { + "path": "pretrain_code/stage2/utils/link.py", + "sha256": "1ce400626a397101e2b7edffff33320be9af1241b5e48a894f8601e03f1fa56d", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 8589 + }, + { + "path": "pretrain_code/stage2/utils/logger.py", + "sha256": "a311452b1829c1fe79f0f7645a32fe151feeaa3515d4a4ebdcfec4953b473461", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 9, + "row": 9668 + }, + { + "path": "pretrain_code/stage2/utils/models.py", + "sha256": "dd68787b47adcab930030bafbac690c745a02d7c10fc7a8472feb6e750f2208b", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 9471 + }, + { + "path": "pretrain_code/stage2/utils/optim_utils.py", + "sha256": "ce8e1b5ee266f04f99e6cf307c15df9050a49fe04dd0c9d95ff132d58a782eb2", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 9, + "row": 8907 + }, + { + "path": "pretrain_code/stage2/utils/preprocess.py", + "sha256": "2f2fbfafe0e029c6b272d3d03fb0d7d006f5e922ade452a9ad89c970bfac6272", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 7969 + }, + { + "path": "pretrain_code/stage2/utils/scheduler.py", + "sha256": "e66d0d52cd85db7711d0e2fa0b765b1c86297c7cf2002165ddcdaa607337f80d", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7544 + }, + { + "path": "pretrain_code/stage2/utils/visualization.py", + "sha256": "ade0310f1e61220dd4d7aaac1132a094375e615e464bc353af25325daabd9991", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7890 + }, + { + "path": "pretrain_code/stage2/zero_shot_cls.py", + "sha256": "01b0bfb4a8b2e680bd8947023677da90ff30443abb5a7c31fb79764f74782de0", + "language": "Python", + "lines": 420, + "truncated": false, + "block": 9, + "row": 11815 + }, + { + "path": "pretrain_code/stage3/UNet2d_condition.py", + "sha256": "bee693bf9c04630c12ac1a50a194da5dd3db7ce26d20b8a374d1879180dc8b16", + "language": "Python", + "lines": 1287, + "truncated": false, + "block": 9, + "row": 12568 + }, + { + "path": "pretrain_code/stage3/modeling_internvl_chat.py", + "sha256": "61149360abc310bf91975597f02953ae673f18d221fc79f46877ed916fda3f53", + "language": "Python", + "lines": 459, + "truncated": false, + "block": 9, + "row": 11910 + } + ] +} \ No newline at end of file diff --git a/manifests/92/github.com__idgrockfragmentationanaliz__pyrockstats.json b/manifests/92/github.com__idgrockfragmentationanaliz__pyrockstats.json new file mode 100644 index 0000000000000000000000000000000000000000..265dcf9deea5c17eb5034b1f3906d5e80fed071b --- /dev/null +++ b/manifests/92/github.com__idgrockfragmentationanaliz__pyrockstats.json @@ -0,0 +1,156 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/idgrockfragmentationanaliz/pyrockstats", + "url": "https://github.com/IDGRockFragmentationAnaliz/pyrockstats", + "host": "github.com", + "commit": "25e380616292366daeb3bdecb8572778795540dc", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "e24647bf7612d15f3e4c12440667bf4f31f3734018fb2e32ce25a30018f1de7f", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2839 + }, + { + "path": "README.md", + "sha256": "23cf5d33ef6430ebc8fc9b71eb75a1af6bdd81b71f80dfa898774c2becd9431f", + "language": "Text", + "lines": 1, + "truncated": false, + "block": 9, + "row": 14447 + }, + { + "path": "__init__.py", + "sha256": "5df74ee6a5df4fac6dd5a0f48321c37baf60f4fc56c8063123b6c98091a4fdaf", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 9, + "row": 6103 + }, + { + "path": "bootstrap/ks_statistics.py", + "sha256": "def542bfba491d0fb19ca75d220dd0d791eb71cb494765adfde639476fe56d79", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7616 + }, + { + "path": "distrebutions/__init__.py", + "sha256": "b71ab49e468f8c10a2dfa33023ee685f8ce0460fdf2e2a38fb12a6d78d6e0411", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 9, + "row": 6374 + }, + { + "path": "distrebutions/distributions.py", + "sha256": "f256f79f090b10805ae797e8e8fc8a4d579ccc3d67c4218534190176302644ec", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6450 + }, + { + "path": "distrebutions/gengamma.py", + "sha256": "971f12894ba187c5adbd9bb6b33332399441ff1a4e913b08603f42feb3a39b65", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 7509 + }, + { + "path": "distrebutions/lognorm.py", + "sha256": "88562d778646f51c5ef663391fb263655dee4e3910fdbed714ef73769e02d61c", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 9, + "row": 8679 + }, + { + "path": "distrebutions/mle/__init__.py", + "sha256": "4997d66203b0ff7438ff01f1808892b06f3114d9a7c0be8368ac9029ab5d5184", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6126 + }, + { + "path": "distrebutions/mle/mle_functional.py", + "sha256": "bac3eb55aae9f321aa619781ad8cd7e7f6aa12b434bb57f5e20f744500ec9f45", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 9, + "row": 6443 + }, + { + "path": "distrebutions/mle/mle_modification.py", + "sha256": "7495869fb91de95a48f170245820c52ac839589cec51bc56bd87a5b1b56d4307", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6653 + }, + { + "path": "distrebutions/paretoexp.py", + "sha256": "f81838002401fd40dd11c27e26a658e5c29013ea50de06de05bf1ee11445594e", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 9, + "row": 9047 + }, + { + "path": "distrebutions/weibull.py", + "sha256": "25c8aa64b66a4f1cb3ff9df982a65742fd6cfdbd33ffba24731ddfbc5f9a0cc1", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 8677 + }, + { + "path": "empirical/__init__.py", + "sha256": "f26a48952063710d94cfc7723a1c14306991423d9c9b97d29162486dd2a504ce", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6181 + }, + { + "path": "empirical/empirical_distrebution.py", + "sha256": "21722a2b2805d2c583f38f4a03ff78abfa534c25d7621c1c86cda2870ed92488", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8223 + }, + { + "path": "statisticestimation.py", + "sha256": "c4144a6edc148d1b69e3ea80f801a8a2e06a97cb35288070583a0ba22b1365ca", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 9132 + } + ] +} \ No newline at end of file diff --git a/manifests/93/zenodo__19609547.json b/manifests/93/zenodo__19609547.json new file mode 100644 index 0000000000000000000000000000000000000000..1286a206d0d9e09a2e6a33a8758f2f0fb7ed0283 --- /dev/null +++ b/manifests/93/zenodo__19609547.json @@ -0,0 +1,120 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19609547", + "url": "10.5281/zenodo.19609547", + "host": "zenodo.org", + "commit": "", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.txt", + "sha256": "2ff5cc07f5c72f0c396dddb590db5afdcae7dbc47d15c2f373b10fdd93d4bb4a", + "language": "License", + "lines": 11, + "truncated": false, + "block": 9, + "row": 2884 + }, + { + "path": "README.md", + "sha256": "f703842cd3d216c881b8fd7329a422b1a8c59644b19c4f43716b1592968019c9", + "language": "Text", + "lines": 188, + "truncated": false, + "block": 9, + "row": 14701 + }, + { + "path": "src/nqs/drivers.py", + "sha256": "8f840dba03315cb747e9c8116564c3f0406dc2deb06b91f6cf82b50aee0a1455", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6779 + }, + { + "path": "src/nqs/exact.py", + "sha256": "7a61f12b1ed47d39f63fbbc36860d1e391b55f00f2f8479f728569ab5168a42d", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8123 + }, + { + "path": "src/nqs/kernels.py", + "sha256": "f4cd6e4cc36afa01f8c0fb3c634bd2790a2309591671329a7074db1d422d8498", + "language": "Python", + "lines": 579, + "truncated": false, + "block": 9, + "row": 11594 + }, + { + "path": "src/nqs/loggers.py", + "sha256": "51930c780c23241f317fa1e6e631ea46d59f1d00bf3799d50b35547d84535e03", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 7888 + }, + { + "path": "src/nqs/main.py", + "sha256": "bafd34b7c3a5beb3a4576fe11c9415e3d31f00ffb01ddbc1757450399c7d3098", + "language": "Python", + "lines": 255, + "truncated": false, + "block": 9, + "row": 10863 + }, + { + "path": "src/nqs/models.py", + "sha256": "f30b9287f70b9b2f82a82a7ab7c7cbb6c35bfd19d5f2ca8aef560aec56eb41e4", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 8313 + }, + { + "path": "src/nqs/nqs.py", + "sha256": "db229f8487631702d0dd44b82b5d6a3e4ee462792f41db53895b12151a10a540", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 9, + "row": 9110 + }, + { + "path": "src/nqs/operators.py", + "sha256": "33b07fa7b18778cd5af7ab3b6562fe7fe0d20006c4810243a4de4b47f69867d8", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 7665 + }, + { + "path": "src/nqs/states.py", + "sha256": "96bad13ee80d63c1a179d85aac8e931bfed711ad611a778fdbe190347e962355", + "language": "Python", + "lines": 502, + "truncated": false, + "block": 9, + "row": 11528 + }, + { + "path": "src/nqs/utilities.py", + "sha256": "511010ec67d93a6f57366a9c61d4fa08d5dceee6c8a5025451263ab344d9a281", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 9, + "row": 10137 + } + ] +} \ No newline at end of file diff --git a/manifests/94/github.com__benoitberanger__mp2rage.json b/manifests/94/github.com__benoitberanger__mp2rage.json new file mode 100644 index 0000000000000000000000000000000000000000..10ec585b9cbb2416271c97f49d12488474e22fd6 --- /dev/null +++ b/manifests/94/github.com__benoitberanger__mp2rage.json @@ -0,0 +1,156 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/benoitberanger/mp2rage", + "url": "https://github.com/benoitberanger/mp2rage", + "host": "github.com", + "commit": "73e481a3c51001295f05c4d413f312ecc5dc733d", + "license": "MIT", + "license_confirmed_by": "license file LICENSE.md", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.md", + "sha256": "ce0b0c10449f76a63dc576df1f0dff790f15788b366a29d86a5ddf4931f85947", + "language": "License", + "lines": 27, + "truncated": false, + "block": 9, + "row": 2875 + }, + { + "path": "README.md", + "sha256": "01b77a1a161574083f2f70eb2adc4c95181747ae8597e90fbbb016ea91447f3d", + "language": "Text", + "lines": 95, + "truncated": false, + "block": 9, + "row": 14680 + }, + { + "path": "mp2rage_cfg_matlabbatch.m", + "sha256": "419fcc9dad6c064950bbafd1a5c9530143904ec9a72e49693cd3a764779f54bd", + "language": "MATLAB", + "lines": 623, + "truncated": false, + "block": 9, + "row": 5839 + }, + { + "path": "mp2rage_defaults.m", + "sha256": "b901e6001d44d9309c796458780805fa58d7c6bb4a4dae91d9a5625f8efc2435", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3928 + }, + { + "path": "mp2rage_display_volume.m", + "sha256": "8bb233793dd6d9da64e8edc2676223e5a1b5ecb12f3a81ab82eec429c6b8db3c", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 3961 + }, + { + "path": "mp2rage_generate_output_fname.m", + "sha256": "170740938a24b0deb5b407963a010717cc6c1e66e5cf090f37a532a0a3016bee", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3806 + }, + { + "path": "mp2rage_get_defaults.m", + "sha256": "80a17256cdc032e9edf26b86b8f07f48efa8ec3e44fa9230d68092b4589c7b2d", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3336 + }, + { + "path": "mp2rage_lookuptable.m", + "sha256": "0de5404d1c5d24d67224898ec772357cf603e3317b35445ce8060a8fb04ca28f", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3511 + }, + { + "path": "mp2rage_matlabbatch_job_output.m", + "sha256": "682fb267dca4eae7647d6870d0ae109161ae20b8025e7719a269c428f1035c7a", + "language": "MATLAB", + "lines": 115, + "truncated": false, + "block": 9, + "row": 4830 + }, + { + "path": "mp2rage_run_correct_T1.m", + "sha256": "9fb505ab0ddd196a566e681703c13b4c5bc9e464c5423ebc8cfa14778918e9a1", + "language": "MATLAB", + "lines": 253, + "truncated": false, + "block": 9, + "row": 5563 + }, + { + "path": "mp2rage_run_estimate_T1.m", + "sha256": "5a9663484bb00986ef3730b774df757983afb0d4dcbe71e38e0dc2879a1cd662", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 9, + "row": 4907 + }, + { + "path": "mp2rage_run_interactive_synthetic.m", + "sha256": "05724381ab41c486e3c0878c6bbb6ec1936cc2062199efd2e18bdd5ca35ebad8", + "language": "MATLAB", + "lines": 143, + "truncated": false, + "block": 9, + "row": 4781 + }, + { + "path": "mp2rage_run_remove_background.m", + "sha256": "b5aed654bc770ccef95252142e92d2cfcd7230cc004d336439600a6cf7bb4a5a", + "language": "MATLAB", + "lines": 196, + "truncated": false, + "block": 9, + "row": 5317 + }, + { + "path": "mp2rage_scale_UNI.m", + "sha256": "9321210021d365d2c3188d4907e61791668fa4a47e57989749c77ed537e9cbff", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3131 + }, + { + "path": "mp2rage_solve_bloch.m", + "sha256": "44090760ae550ac81003e4bae34a501541fae22a63c5b780d69d73a280e7c847", + "language": "MATLAB", + "lines": 169, + "truncated": false, + "block": 9, + "row": 5128 + }, + { + "path": "mp2rage_unscale_UNI.m", + "sha256": "a45567d8419b64c9630eb19095e4dd9d173c0d8e7b18ce6f984036776f028d39", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3010 + } + ] +} \ No newline at end of file diff --git a/manifests/94/github.com__cicadawing__single-vs-multi-echo-fmri-denoising-strategies.json b/manifests/94/github.com__cicadawing__single-vs-multi-echo-fmri-denoising-strategies.json new file mode 100644 index 0000000000000000000000000000000000000000..d12cac7d4a10bfc1f85e7d82616b4a853786222e --- /dev/null +++ b/manifests/94/github.com__cicadawing__single-vs-multi-echo-fmri-denoising-strategies.json @@ -0,0 +1,471 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/cicadawing/single-vs-multi-echo-fmri-denoising-strategies", + "url": "https://github.com/cicadawing/Single-vs-Multi-Echo-fMRI-Denoising-Strategies", + "host": "github.com", + "commit": "210b1a6826a5dc6682b819780816b8c5176de50f", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4", + "language": "License", + "lines": 201, + "truncated": false, + "block": 1, + "row": 2216 + }, + { + "path": "README.md", + "sha256": "37d952f9450a83d9b17c90947d406f8f7db0bfa0d67e2df04790e372bfec8ff4", + "language": "Text", + "lines": 16, + "truncated": false, + "block": 9, + "row": 14496 + }, + { + "path": "Step1.XNAT_BIDS_FS_PREP/Step1.download_xnat.sh", + "sha256": "6781900916a22321479e7a422fe76c40d585bb8469610ce8b4604dd71a2c1be5", + "language": "Shell", + "lines": 68, + "truncated": false, + "block": 9, + "row": 14302 + }, + { + "path": "Step1.XNAT_BIDS_FS_PREP/Step2.Presurfer_Freesurfer.sh", + "sha256": "72eb4185212569dc21e7fa774112515a004149e917a98f39fe2d3e18ea3a2e58", + "language": "Shell", + "lines": 111, + "truncated": false, + "block": 9, + "row": 14335 + }, + { + "path": "Step1.XNAT_BIDS_FS_PREP/Step3.fMRIPrep.sh", + "sha256": "b012624ca443c7ee272348c54a9989839b3e47c03bc444f113310deb1033433b", + "language": "Shell", + "lines": 132, + "truncated": false, + "block": 9, + "row": 14382 + }, + { + "path": "Step2.ResampleProbabilityMaps/ResampleT1TissueMapstoNative.sh", + "sha256": "215c3f30c2f02f9c7be978916fb8feae5d67460db02605656a045d2ea2b6961b", + "language": "Shell", + "lines": 68, + "truncated": false, + "block": 9, + "row": 14294 + }, + { + "path": "Step3.SingleEchoICARegressorsDenoising/AllSteps.sh", + "sha256": "c9f97868270bab4a54e87247a6868d4052fec197ebbc455227acf40f4556eecd", + "language": "Shell", + "lines": 37, + "truncated": false, + "block": 9, + "row": 14176 + }, + { + "path": "Step3.SingleEchoICARegressorsDenoising/NEXT STEP AFTER THESE FILES/Step1.Execute_Generate_Pipeline_efficacy_indices_1.subjectwise.sh", + "sha256": "64e4030555833fadea8f8dc9f2b613f061df2ddd5df59fb5f40153666101fa54", + "language": "Shell", + "lines": 141, + "truncated": false, + "block": 9, + "row": 14377 + }, + { + "path": "Step3.SingleEchoICARegressorsDenoising/NEXT STEP AFTER THESE FILES/Step1.Generate_Pipeline_Efficacy_Indices_subjectwise.py", + "sha256": "55549480cda7abfee1dbe2383b3d34ed81463742c96f5abce978d24520ce69d7", + "language": "Python", + "lines": 450, + "truncated": false, + "block": 9, + "row": 11814 + }, + { + "path": "Step3.SingleEchoICARegressorsDenoising/Step.Initial_1_Melodic.sh", + "sha256": "1d9a8e9247937a28572ad0771f825de1b8048717622bf81f6957c620e4c2617f", + "language": "Shell", + "lines": 59, + "truncated": false, + "block": 9, + "row": 14303 + }, + { + "path": "Step3.SingleEchoICARegressorsDenoising/Step.Initial_2_train_fix.sh", + "sha256": "94c963504f9c8d31c410d3eb2a171393faebf9127600ed7d4404b1112f42f566", + "language": "Shell", + "lines": 36, + "truncated": false, + "block": 9, + "row": 14293 + }, + { + "path": "Step3.SingleEchoICARegressorsDenoising/Step2a.AROMA.sh", + "sha256": "d77a2350678db4e904107ec97579a5e599f741f3e7206420d0719897c3deac7b", + "language": "Shell", + "lines": 56, + "truncated": false, + "block": 9, + "row": 14275 + }, + { + "path": "Step3.SingleEchoICARegressorsDenoising/Step2b.FIX.sh", + "sha256": "15ba7b612140f4196bd62265402655c8ee380cfbdbaef60ea263b4cb37115554", + "language": "Shell", + "lines": 30, + "truncated": false, + "block": 9, + "row": 14233 + }, + { + "path": "Step3.SingleEchoICARegressorsDenoising/Step3.FDCALC.py", + "sha256": "7e51bfa90fb583e442e678ff86e5645203cac40bcf82a6751bd7bc6365e7023c", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 9323 + }, + { + "path": "Step3.SingleEchoICARegressorsDenoising/Step3.FDCALC.sh", + "sha256": "9cbb26b246cfa02a2207275ceba7ce256665e7ab333ff7211b07272bf7de6d8f", + "language": "Shell", + "lines": 17, + "truncated": false, + "block": 9, + "row": 14128 + }, + { + "path": "Step3.SingleEchoICARegressorsDenoising/Step3.RegressionParamsGenerator.py", + "sha256": "8bb8d214de702cfefac0785a53704ef17e40bd75a0584b60e623f5ad3d7ffddb", + "language": "Python", + "lines": 256, + "truncated": false, + "block": 9, + "row": 11026 + }, + { + "path": "Step3.SingleEchoICARegressorsDenoising/Step3a.NO_AROMA.ConfoundRegression.sh", + "sha256": "95e63c4318c942de4bbfc53b6390c3b4cbd60ae00d153099c5359cfa6ad77ae8", + "language": "Shell", + "lines": 56, + "truncated": false, + "block": 9, + "row": 14323 + }, + { + "path": "Step3.SingleEchoICARegressorsDenoising/Step3b.WITH_AROMA.ConfoundRegression.sh", + "sha256": "4ffb98c253b766d9ad9305ffa97858328856f2eed54c6954686632fd0f381861", + "language": "Shell", + "lines": 54, + "truncated": false, + "block": 9, + "row": 14324 + }, + { + "path": "Step3.SingleEchoICARegressorsDenoising/Step3c.FIX_ConfoundRegression.sh", + "sha256": "52951b1d402bda54589cc1e1334db4681b6ea2ed86e9329e355bd55f309303d9", + "language": "Shell", + "lines": 54, + "truncated": false, + "block": 9, + "row": 14322 + }, + { + "path": "Step3.SingleEchoICARegressorsDenoising/Step4.RIPTIDE_ALONE.ConfoundRegression.sh", + "sha256": "feca46a1e07b85922b2e0ea73b154e775481e91875530cca82b77f758ee09bbd", + "language": "Shell", + "lines": 88, + "truncated": false, + "block": 9, + "row": 14359 + }, + { + "path": "Step3a.MultiEchoICADenoising/Step_fmri_2.tedana_melodic.py", + "sha256": "b21347728a5f05e7fd5f653f0f6daada9e57f62bd36537ec24815885494a8116", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 9, + "row": 10045 + }, + { + "path": "Step3a.MultiEchoICADenoising/Step_fmri_2.tedana_melodic.sh", + "sha256": "c28a68a77df4c665a5c92352f8d68a9efdb7515126821a0872ec85291136cb0d", + "language": "Shell", + "lines": 181, + "truncated": false, + "block": 9, + "row": 14401 + }, + { + "path": "Step3a.MultiEchoICADenoising/train_fix.sh", + "sha256": "c83b81a89b74e0301ffebc71203db390bc7ac97cb9c7a0a706786e75e0191898", + "language": "Shell", + "lines": 36, + "truncated": false, + "block": 9, + "row": 14299 + }, + { + "path": "Step3b.MultiEchoRegressors/AllSteps.sh", + "sha256": "ff877a2ee412bf3a963f88ff0e29c6639e59b1a0f248b2650b04c394ff99843f", + "language": "Shell", + "lines": 37, + "truncated": false, + "block": 9, + "row": 14207 + }, + { + "path": "Step3b.MultiEchoRegressors/NEXT STEP AFTER THESE FILES/Step1.Execute_Generate_Pipeline_efficacy_indices_1.subjectwise.sh", + "sha256": "0c291be8179034e1e010c13c515f57b6305b61dd45b4d97bdffa1137cc79a62e", + "language": "Shell", + "lines": 223, + "truncated": false, + "block": 9, + "row": 14410 + }, + { + "path": "Step3b.MultiEchoRegressors/NEXT STEP AFTER THESE FILES/Step1.Generate_Pipeline_Efficacy_Indices_subjectwise.py", + "sha256": "9d6ff3af954a1d63d36a2fcc1e4684623a0532f692f5d920b213dfae70d97ef9", + "language": "Python", + "lines": 450, + "truncated": false, + "block": 9, + "row": 11812 + }, + { + "path": "Step3b.MultiEchoRegressors/Step3.FDCALC.py", + "sha256": "7051c28a1d7baffee73665f322d794cfcdfb11585ef796236abee14abb08e36a", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 9320 + }, + { + "path": "Step3b.MultiEchoRegressors/Step3.FDCALC.sh", + "sha256": "337d431a3238e8b683706c9c54ddf9675ce020ae10cdbf7f4a142d1364ab70dc", + "language": "Shell", + "lines": 17, + "truncated": false, + "block": 9, + "row": 14125 + }, + { + "path": "Step3b.MultiEchoRegressors/Step3.RegressionParamsGenerator.py", + "sha256": "8bb8d214de702cfefac0785a53704ef17e40bd75a0584b60e623f5ad3d7ffddb", + "language": "Python", + "lines": 256, + "truncated": false, + "block": 9, + "row": 11026 + }, + { + "path": "Step3b.MultiEchoRegressors/Step3a.Multiecho.Step_fmri_3_ME_ICA_NO_AROMA.ConfoundRegression.sh", + "sha256": "c2b18d06526be71bfb19059392580b809502e14989ea8f7060ee12d75ddb28e6", + "language": "Shell", + "lines": 62, + "truncated": false, + "block": 9, + "row": 14330 + }, + { + "path": "Step3b.MultiEchoRegressors/Step3b.Multiecho.Step_fmri_3_NO_ME_ICA_NO_AROMA.ConfoundRegression.sh", + "sha256": "bdc1b7de06c5618d70b680690b4ac0286ca4b3a7662c9dfb1ad47dbe92235a45", + "language": "Shell", + "lines": 54, + "truncated": false, + "block": 9, + "row": 14321 + }, + { + "path": "Step3b.MultiEchoRegressors/Step3c.Multiecho.Step_fmri_3_NO_ME_ICA_WITH_AROMA.ConfoundRegression.sh", + "sha256": "18cff74ab638ab60e9c58d37854d2f05e736391d7913189b2699b0b1ee81634b", + "language": "Shell", + "lines": 52, + "truncated": false, + "block": 9, + "row": 14313 + }, + { + "path": "Step3b.MultiEchoRegressors/Step3d.Multiecho.Step_fmri_3_ME_ICA_AROMA.ConfoundRegression.sh", + "sha256": "8fd969b276e8d5e3ae84e12db23372c32ead0ed7141ab0a532598a4136fe4de2", + "language": "Shell", + "lines": 53, + "truncated": false, + "block": 9, + "row": 14320 + }, + { + "path": "Step3b.MultiEchoRegressors/Step3e.ME_ICA_FIX.sh", + "sha256": "f649422dc63dd42f44ae84ec83f52b82773b64865a22eca94849206faa0417c5", + "language": "Shell", + "lines": 46, + "truncated": false, + "block": 9, + "row": 14300 + }, + { + "path": "Step3b.MultiEchoRegressors/Step3e.Multiecho.Step_fmri_3_NO_ME_ICA_FIX.ConfoundRegression.sh", + "sha256": "3555e7d9790549b1430b4491db7c3fa58fb73fd814814a7381921dc862c48ff1", + "language": "Shell", + "lines": 51, + "truncated": false, + "block": 9, + "row": 14314 + }, + { + "path": "Step3b.MultiEchoRegressors/Step3f.Multiecho.Step_fmri_3_ME_ICA_FIX.ConfoundRegression.sh", + "sha256": "32fa83ea6d899b3cf8ba68c50b71f7370f5f69c09168e128c3bb06117aa7ef1e", + "language": "Shell", + "lines": 49, + "truncated": false, + "block": 9, + "row": 14310 + }, + { + "path": "Step3b.MultiEchoRegressors/Step4.Multiecho.Step_fmri_4_RIPTIDE_ALONE.ConfoundRegression.sh", + "sha256": "3405452c50e383b344e77c6d9fe6b6b9106b8d8127e0739006557819c97c6dfc", + "language": "Shell", + "lines": 90, + "truncated": false, + "block": 9, + "row": 14365 + }, + { + "path": "Step4.MultiEchoIQMs/Step2.Execute_Generate_Pipeline_efficacy_indices_3.comparing_pipelines.sh", + "sha256": "f1586af28f0ea8720b222c634fa612b5b24dbb8535a6eff28345760f56da036b", + "language": "Shell", + "lines": 101, + "truncated": false, + "block": 9, + "row": 14363 + }, + { + "path": "Step4.MultiEchoIQMs/Step2.Generate_Pipeline_Efficacy_Indices_groupwise_comparing_pipelines_raincloud.py", + "sha256": "6b02941621e3071c5a4cb59cd89acc23887f82dc0c3d3ada426eef36cbe6d141", + "language": "Python", + "lines": 424, + "truncated": false, + "block": 9, + "row": 11755 + }, + { + "path": "Step4.MultiEchoIQMs/Step2a.EuclideanDistanceMatrix_TIAN.py", + "sha256": "f68b1a3374dc81e248760720455b6e0878bf256b9fc62a506768c6825b4fef12", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 9, + "row": 9249 + }, + { + "path": "Step4.MultiEchoIQMs/subjects_noissue_fmriprep_fd_volumes.sh", + "sha256": "0ab4e85d173cf7947e431ca6ba80258820ce3eba1ff4b30018fce281e9025471", + "language": "Shell", + "lines": 39, + "truncated": false, + "block": 9, + "row": 14159 + }, + { + "path": "Step4.SingleEchoIQMs/Step2.Execute_Generate_Pipeline_efficacy_indices_3.comparing_pipelines.sh", + "sha256": "f3f680cf21ef06e4da035738aadb388459661fc31610e2a617bdd18078ee7478", + "language": "Shell", + "lines": 61, + "truncated": false, + "block": 9, + "row": 14305 + }, + { + "path": "Step4.SingleEchoIQMs/Step2.Generate_Pipeline_Efficacy_Indices_groupwise_comparing_pipelines_raincloud.py", + "sha256": "0ac5441dd9eb14d728a4331505809db2b12b1e011300bbaeffd3205f5b3afeab", + "language": "Python", + "lines": 424, + "truncated": false, + "block": 9, + "row": 11754 + }, + { + "path": "Step4.SingleEchoIQMs/Step2a.EuclideanDistanceMatrix_TIAN.py", + "sha256": "f68b1a3374dc81e248760720455b6e0878bf256b9fc62a506768c6825b4fef12", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 9, + "row": 9249 + }, + { + "path": "Step4.SingleEchoIQMs/subjects_noissue_fmriprep_fd_volumes.sh", + "sha256": "0ab4e85d173cf7947e431ca6ba80258820ce3eba1ff4b30018fce281e9025471", + "language": "Shell", + "lines": 39, + "truncated": false, + "block": 9, + "row": 14159 + }, + { + "path": "Step5.KRRs/Step1.KRR_RunMakeSHFiles.sh", + "sha256": "cd3cb618571ff5b5cee9f241f9153434ed6850e34a7b323a360709d443a8c345", + "language": "Shell", + "lines": 136, + "truncated": false, + "block": 9, + "row": 14374 + }, + { + "path": "Step5.KRRs/Step1KRR_Run.m", + "sha256": "3372eff95a4bdf513d59bdec687ab7704441337db2919f6dcd21cd96db12f264", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 9, + "row": 4923 + }, + { + "path": "Step5.KRRs/Step2.KRR_Plot.py", + "sha256": "80c7241fc9e118d729b5ae25aad9f325da8fb70c80a3aa7d43281e2b7fb1bf05", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 9, + "row": 10246 + }, + { + "path": "Step5.KRRs/Step2.KRR_Plot.sh", + "sha256": "e5356fb28cb77017fc949b34e7dd8dddcf3508c5857d3ec9105c74f3aa939f1b", + "language": "Shell", + "lines": 4, + "truncated": false, + "block": 9, + "row": 13903 + }, + { + "path": "Step6.CombiningIQMSAcrossStreams/CombineFigs.py", + "sha256": "03c4c591d3d65c354f70ae401681584f596cc33a11407558c852ed5cb5944be0", + "language": "Python", + "lines": 510, + "truncated": false, + "block": 9, + "row": 11945 + }, + { + "path": "Step6.CombiningIQMSAcrossStreams/SH_CombineFigs.sh", + "sha256": "036b0573dc7beb9f2032a5de8353890b87aa4276120ab53d27389e6188a3a063", + "language": "Shell", + "lines": 4, + "truncated": false, + "block": 9, + "row": 13901 + } + ] +} \ No newline at end of file diff --git a/manifests/95/github.com__treanus__kul_nis.json b/manifests/95/github.com__treanus__kul_nis.json new file mode 100644 index 0000000000000000000000000000000000000000..0a3c954ac423da4d4ba2377ffe875664afc4769e --- /dev/null +++ b/manifests/95/github.com__treanus__kul_nis.json @@ -0,0 +1,543 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/treanus/kul_nis", + "url": "https://github.com/treanus/KUL_NIS", + "host": "github.com", + "commit": "2c11248436041bffa0a63ae7f819317b03efb3ad", + "license": "MPL-2.0", + "license_confirmed_by": "license file License.txt", + "redistribution": "yes", + "files": [ + { + "path": "KUL_BIDS_clean.py", + "sha256": "da5dc1b264e2314094a38ee18bf4f1180ed1c86d9f3d393be86d7e7eac1006e4", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 9, + "row": 9718 + }, + { + "path": "KUL_DRT.sh", + "sha256": "dde8be9139ec72c5907fc9373a5d41f109d7e7a3635a46a885f317fa658665cf", + "language": "Shell", + "lines": 322, + "truncated": false, + "block": 9, + "row": 14392 + }, + { + "path": "KUL_EDs_b2masks.py", + "sha256": "6cc0f97e0dcfd45d66460caa8a808974e28d1fc9676146525b65f6498534ec12", + "language": "Python", + "lines": 390, + "truncated": false, + "block": 9, + "row": 12012 + }, + { + "path": "KUL_MRtrix3_connectome.sh", + "sha256": "937a145f22c05504b6e6a4bf510e1bcddda86a6bc69c0a748c736961a7f30cb8", + "language": "Shell", + "lines": 202, + "truncated": false, + "block": 9, + "row": 14306 + }, + { + "path": "KUL_MS_lesion_stats.sh", + "sha256": "08d2364b4815bd8090139ac0f450a3144a48b63b51801bda546ba3512e98f97c", + "language": "Shell", + "lines": 496, + "truncated": false, + "block": 9, + "row": 14414 + }, + { + "path": "KUL_T1T2FLAIRMTR_ratio.sh", + "sha256": "dd841b46ba330e5ae8983026e6f3b0e3d66bff2d2c66c801396ed1d995e071cc", + "language": "Shell", + "lines": 998, + "truncated": false, + "block": 9, + "row": 14427 + }, + { + "path": "KUL_VSC_prepare_dwiprep.sh", + "sha256": "89104bc93bad130258730fc3e5ae2e16d4a4eed49d5fbabe0c66854990f20bd3", + "language": "Shell", + "lines": 48, + "truncated": false, + "block": 9, + "row": 14270 + }, + { + "path": "KUL_anat_biascorrect.sh", + "sha256": "a57f310d3bf8e1340db03ecc3d12405dde22b04cc0d1547763fe7b8031a6f17a", + "language": "Shell", + "lines": 214, + "truncated": false, + "block": 9, + "row": 14339 + }, + { + "path": "KUL_anat_lesionheatmap.sh", + "sha256": "92cd526b48e20e43a946c970b0afe74314e885ced886bd954824777b4b769aca", + "language": "Shell", + "lines": 243, + "truncated": false, + "block": 9, + "row": 14364 + }, + { + "path": "KUL_anat_register.sh", + "sha256": "d1ce83550531af24f0857ac0c21313894c1046cfe89884c4695dba95d4bd6fa0", + "language": "Shell", + "lines": 533, + "truncated": false, + "block": 9, + "row": 14409 + }, + { + "path": "KUL_anat_segment_tumor.sh", + "sha256": "bfa85abf5243d387b857555f6c4704eed87f3fa7e9466a292f3e99becd13c6a3", + "language": "Shell", + "lines": 577, + "truncated": false, + "block": 9, + "row": 14413 + }, + { + "path": "KUL_bids_crop.sh", + "sha256": "85ffe67b9a85740f164bb5187d1e27c81d655103d684e7a6b5aa585fa140527a", + "language": "Shell", + "lines": 137, + "truncated": false, + "block": 9, + "row": 14280 + }, + { + "path": "KUL_bids_summary.sh", + "sha256": "5e5e6c8a59fe58aefca85fbae0c52de94d5c108e9ead3f6bf694014e1a7d4d24", + "language": "Shell", + "lines": 112, + "truncated": false, + "block": 9, + "row": 14311 + }, + { + "path": "KUL_clinical_fmridti.sh", + "sha256": "bf68a37acebfd26acf200d333883db976d8d654080d0e7136a2d3f3e2548f209", + "language": "Shell", + "lines": 1342, + "truncated": false, + "block": 9, + "row": 14428 + }, + { + "path": "KUL_dcm2bids.py", + "sha256": "637dc8b723c80351065fca7f563a4d6b4716fcac7d88a9153d33d33618cfbad3", + "language": "Python", + "lines": 173, + "truncated": false, + "block": 9, + "row": 9768 + }, + { + "path": "KUL_dcm2bids.sh", + "sha256": "5f1ebdcbbcbec0447f9142735cac06627cd0517283259b4d9e8688fc7325f1ef", + "language": "Shell", + "lines": 1588, + "truncated": false, + "block": 9, + "row": 14430 + }, + { + "path": "KUL_dcm2bids_new.sh", + "sha256": "8e0b7187801a66fecc6288e75531d4b81f915ada6f89b1eaf750b2711ebac422", + "language": "Shell", + "lines": 1591, + "truncated": false, + "block": 9, + "row": 14429 + }, + { + "path": "KUL_dwiprep.sh", + "sha256": "5afc575593b7867af3fe89b8ffacc6358c7a4fc9e7efcfad9254b49fdaab90b5", + "language": "Shell", + "lines": 923, + "truncated": false, + "block": 9, + "row": 14422 + }, + { + "path": "KUL_dwiprep_FT.sh", + "sha256": "a1de4e654ddaebeb73844d09f738416ca3387aedcb6db7b8a482642b6caa433b", + "language": "Shell", + "lines": 1343, + "truncated": false, + "block": 9, + "row": 14431 + }, + { + "path": "KUL_dwiprep_MNI.sh", + "sha256": "47693919cff40782ae589a8ef46f179915f8c41b53a7b737afb60d44cd3907a4", + "language": "Shell", + "lines": 238, + "truncated": false, + "block": 9, + "row": 14353 + }, + { + "path": "KUL_dwiprep_anat.sh", + "sha256": "b513032be688687c1767d14a93539e04d2256eb956f1063c77e7cf07aac63c80", + "language": "Shell", + "lines": 609, + "truncated": false, + "block": 9, + "row": 14417 + }, + { + "path": "KUL_dwiprep_fibertract.sh", + "sha256": "11f142f80230abd07948af862eeeb7dce01a87afe18f1c5dc2f58f6cd1c329c1", + "language": "Shell", + "lines": 514, + "truncated": false, + "block": 9, + "row": 14406 + }, + { + "path": "KUL_dwiprep_group_fba.sh", + "sha256": "054d767be208940502ea5db1935c2618e87637ce15bc6ca7b0b8b0c4d997758b", + "language": "Shell", + "lines": 856, + "truncated": false, + "block": 9, + "row": 14421 + }, + { + "path": "KUL_dwiprep_group_fba_bkup.sh", + "sha256": "0445c45ee92bd197dd37f15fcc78d166f10e863e7238a9e4fb8882ed93aa6874", + "language": "Shell", + "lines": 801, + "truncated": false, + "block": 9, + "row": 14416 + }, + { + "path": "KUL_fmriproc_conn.sh", + "sha256": "0f852b208f7a54899b8ab2fa9c80d6a34dc01db684a2ac12cc713c45082305aa", + "language": "Shell", + "lines": 268, + "truncated": false, + "block": 9, + "row": 14373 + }, + { + "path": "KUL_fmriproc_spm.sh", + "sha256": "7f990d194b2319e76d4d2434087a593e550f155a7534acaf70d9f72e98e26ce3", + "language": "Shell", + "lines": 375, + "truncated": false, + "block": 9, + "row": 14398 + }, + { + "path": "KUL_karawun2brainlab.sh", + "sha256": "6ac869362be3019c79cf1e61774c6e2864a430b890dbe50f64e6507546263a91", + "language": "Shell", + "lines": 248, + "truncated": false, + "block": 9, + "row": 14349 + }, + { + "path": "KUL_karawun_prepare.sh", + "sha256": "55be0d3512d7a63ccdd38d8820a9571d1cf604a3e939904ef4c746421a5062d7", + "language": "Shell", + "lines": 416, + "truncated": false, + "block": 9, + "row": 14391 + }, + { + "path": "KUL_lesion_fs_recall.sh", + "sha256": "f11b83115291b633feb54c38605931a3768bbfd8609f83e2550a2000f9caa641", + "language": "Shell", + "lines": 1327, + "truncated": false, + "block": 9, + "row": 14426 + }, + { + "path": "KUL_linux_givebackmyfiles.sh", + "sha256": "d5e45c2e6ab549288b4710e3c89acfa4f6ecac26c84e5022c7b0005d9c2c3a9d", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 9, + "row": 13942 + }, + { + "path": "KUL_main_functions.sh", + "sha256": "9ef09bb35eef418a7477b8c04723daf9ae0a16b7e938b8eb1687f13f9d67dc49", + "language": "Shell", + "lines": 417, + "truncated": false, + "block": 9, + "row": 14407 + }, + { + "path": "KUL_make_fMRI_labels.sh", + "sha256": "b2a9f1652757c97ac57961120e3f768f7c6d0d3b22697a028f27b0aee7c30de8", + "language": "Shell", + "lines": 101, + "truncated": false, + "block": 9, + "row": 14279 + }, + { + "path": "KUL_mrview_figure.sh", + "sha256": "af7d767a5b30fd7b344ad630d6df263e8da0f7281bbf715ae5fcdbce013b872c", + "language": "Shell", + "lines": 335, + "truncated": false, + "block": 9, + "row": 14376 + }, + { + "path": "KUL_multisubjects_dcm2bids.sh", + "sha256": "cf8d6006d308bca3992fd38de579b7bed83a8ba6d4bc21943ee55b310c9ed08d", + "language": "Shell", + "lines": 239, + "truncated": false, + "block": 9, + "row": 14360 + }, + { + "path": "KUL_nii2dcm.py", + "sha256": "383933e36d0b019f1ff108b404d3ae055c2a364872b046fd7f588529e2d6a0e3", + "language": "Python", + "lines": 244, + "truncated": false, + "block": 9, + "row": 10300 + }, + { + "path": "KUL_preproc_all.sh", + "sha256": "1d28820f6a86414cda4df393f2959e09e80788706541183eeefc6a2ffd9c95b5", + "language": "Shell", + "lines": 1853, + "truncated": false, + "block": 9, + "row": 14432 + }, + { + "path": "KUL_qsiprep.sh", + "sha256": "987651a97d1ae97cca5baf852c77b42f282b3fe27481fb16b62611a8e170616f", + "language": "Shell", + "lines": 484, + "truncated": false, + "block": 9, + "row": 14396 + }, + { + "path": "KUL_radsyndisco.sh", + "sha256": "cd3f5b60d69d803f62c22b0798d9ff8889f2314e558dcf26bed69a3798118d67", + "language": "Shell", + "lines": 191, + "truncated": false, + "block": 9, + "row": 14351 + }, + { + "path": "KUL_reg_pwi_2_T1.sh", + "sha256": "b6a1ba185ff6c0a87c6692a9a67fc701e1f5b810aa947fbe5c9ba13c6df370ba", + "language": "Shell", + "lines": 48, + "truncated": false, + "block": 9, + "row": 14232 + }, + { + "path": "KUL_synb0.sh", + "sha256": "a4e2cd6c86eca5397db6f66e1357469229a12458b2a474640162985ffe3fc7ae", + "language": "Shell", + "lines": 313, + "truncated": false, + "block": 9, + "row": 14380 + }, + { + "path": "License.txt", + "sha256": "1f256ecad192880510e84ad60474eab7589218784b9a50bc7ceee34c2b91f1d5", + "language": "License", + "lines": 373, + "truncated": false, + "block": 6, + "row": 2090 + }, + { + "path": "README.md", + "sha256": "e9dcbe4ffde00883c6daa5e762bc10057da90bf26482297fd83d58446dabe5ee", + "language": "Text", + "lines": 127, + "truncated": false, + "block": 9, + "row": 14607 + }, + { + "path": "VSC/Env_T1T2FLAIRMTR_cpu.sh", + "sha256": "dc340debd28e73b5b5cff260a92b6034fb894d5c670ef33952a60135287486db", + "language": "Shell", + "lines": 35, + "truncated": false, + "block": 9, + "row": 14160 + }, + { + "path": "VSC/Env_T1T2FLAIRMTR_gpu.sh", + "sha256": "fcbec642a75fe64f5fddc07846a6140693fcc28c5e372c369f9643595fdf54a5", + "language": "Shell", + "lines": 35, + "truncated": false, + "block": 9, + "row": 14158 + }, + { + "path": "build_singularity/KUL_build_singularity.sh", + "sha256": "08773d526bd0a2b73e6d9254cc5adfed1a64d7493a151448a815aa9969198ea9", + "language": "Shell", + "lines": 18, + "truncated": false, + "block": 9, + "row": 14017 + }, + { + "path": "debug/test_kul_task_exec.sh", + "sha256": "c327b41c02947af82add5b650f1c42077be7d15e382237066e83bc9e750a7344", + "language": "Shell", + "lines": 24, + "truncated": false, + "block": 9, + "row": 14024 + }, + { + "path": "share/spm12/spm12_fmri_stats_1run.m", + "sha256": "ed7042633be2a4430b3fbb80379c6b9bcc6d611c51e6a0482e6e0f197e4c4122", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3089 + }, + { + "path": "share/spm12/spm12_fmri_stats_1run_job.m", + "sha256": "4cbbb4f835a618b7164c573fcc2cbf7dd5385c95e087b320aa79ef5fb3e9d5d4", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 9, + "row": 4569 + }, + { + "path": "share/spm12/spm12_fmri_stats_2runs.m", + "sha256": "ed7042633be2a4430b3fbb80379c6b9bcc6d611c51e6a0482e6e0f197e4c4122", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3089 + }, + { + "path": "share/spm12/spm12_fmri_stats_2runs_job.m", + "sha256": "d4eb0107e6020ebb7dccc94f33fac921f2e762d18fd0754f4c8d336fdb3d4a03", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 4968 + }, + { + "path": "share/spm12/spm12_fmri_stats_3runs.m", + "sha256": "ed7042633be2a4430b3fbb80379c6b9bcc6d611c51e6a0482e6e0f197e4c4122", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3089 + }, + { + "path": "share/spm12/spm12_fmri_stats_3runs_job.m", + "sha256": "81a77d1fca44c224aedef1d706a8074f1b35311e8585b436b31a70aff8ec45ba", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 5187 + }, + { + "path": "studies/cappelle2021/KUL_plot_histograms.m", + "sha256": "fcd331589e26ca9a382b2d718fe214720d1c0e776455cf53498cb757c5198d8b", + "language": "MATLAB", + "lines": 142, + "truncated": false, + "block": 9, + "row": 4880 + }, + { + "path": "studies/cappelle2021/KUL_plot_stats.m", + "sha256": "248dbeee4fbb9784af90aac8bba0d6b9832e80a06bf37388dc094b66744598c7", + "language": "MATLAB", + "lines": 174, + "truncated": false, + "block": 9, + "row": 5134 + }, + { + "path": "studies/cappelle2021/KUL_samseg_longitudinal.py", + "sha256": "42de0030f22104470e338129754ad4b4d5c1dacd2a919328e53cd596d487d3b1", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 9, + "row": 9748 + }, + { + "path": "studies/cappelle2021/KUL_warp_lesions2mni.py", + "sha256": "b4444cca096348419aa7e99579a197b9cab1911839dbb60d9648cbf228a1b326", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 9086 + }, + { + "path": "studies/cappelle2021/convert2bids.sh", + "sha256": "4a35e9c938aea37b27fbabbe421abf2b6ad7ee7515c110d16eb0aa0bc62f6844", + "language": "Shell", + "lines": 43, + "truncated": false, + "block": 9, + "row": 14214 + }, + { + "path": "studies/cappelle2021/convert_extra2bids.sh", + "sha256": "9e8932ff866ea6ff4f251df6a318dfbc7891523db6e1a8a5dabe72ecb9a6574b", + "language": "Shell", + "lines": 49, + "truncated": false, + "block": 9, + "row": 14239 + }, + { + "path": "studies/verhaaren2022/KUL_DRT_determine_position.py", + "sha256": "f7b129d61e4c42db78d29c43d8d90266b9d9bc64c383980cea9a757dbb1d34be", + "language": "Python", + "lines": 318, + "truncated": false, + "block": 9, + "row": 11611 + } + ] +} \ No newline at end of file diff --git a/manifests/97/github.com__charleboislab__pathogenic_yeast_ai.json b/manifests/97/github.com__charleboislab__pathogenic_yeast_ai.json new file mode 100644 index 0000000000000000000000000000000000000000..c33024d61d1613617bf1cffb25af0ee28e05bb82 --- /dev/null +++ b/manifests/97/github.com__charleboislab__pathogenic_yeast_ai.json @@ -0,0 +1,156 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/charleboislab/pathogenic_yeast_ai", + "url": "https://github.com/CharleboisLab/pathogenic_yeast_AI/tree/Pathogenic_yeas_AI", + "host": "github.com", + "commit": "b4aeffc78555567b1383bae4ca21ffa2e4f927e1", + "license": "CC-BY-NC-ND-4.0", + "license_confirmed_by": "license file Licence.md", + "redistribution": "with_conditions", + "files": [ + { + "path": "DataProcessing/RunSegmentation.py", + "sha256": "a424040e9a5f9a5865f2d53539cf1390ed1bed13b6dc851edfaf11d9614359b5", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9561 + }, + { + "path": "DataProcessing/kMeans_ResNet18.py", + "sha256": "8975ce17a2d2b1ad44ac793fc2d5eaf75ba3ff17a55c1c4e86dd9c17e58dfc35", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 7980 + }, + { + "path": "DataProcessing/model_pytorch.py", + "sha256": "0e53daa510ec62ec1d7bad2a3a1d15cc5bc2d956875da25de1a107167e28378e", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 9342 + }, + { + "path": "DataProcessing/neural_network.py", + "sha256": "4bef97f0a18b70c078241e505a7e7243e59f6afedcea994afc49117deb9ca729", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9247 + }, + { + "path": "DataProcessing/random_downsample.py", + "sha256": "2e5a086d9c3c13df51a807eeb3a2647654e6a0eb39d42cec8a7972fb234e4db9", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6736 + }, + { + "path": "DataProcessing/segment.py", + "sha256": "ddf34f47f4910b3bbaa97cfe96a722af72a2137c2d42eac96e2e41c29c935490", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 9, + "row": 9927 + }, + { + "path": "DatasetAnalysis/PCA.py", + "sha256": "1f5641ba35c9089f239b59a028b6a90b2672bb72ab58b25e05460dcf3741a392", + "language": "Python", + "lines": 204, + "truncated": false, + "block": 9, + "row": 10060 + }, + { + "path": "DatasetAnalysis/PixelDistributions.py", + "sha256": "7ccac2d9ecb5e6a5de5d8ff409fcc83fbc359b37e8c47c3a649b2794a0026c23", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 9, + "row": 8582 + }, + { + "path": "Licence.md", + "sha256": "e24ff9c5d78aae4d303e5b5dbb340622cd2903176456716c8fac8ee0655fe6cc", + "language": "License", + "lines": 14, + "truncated": false, + "block": 9, + "row": 2890 + }, + { + "path": "Models/CompareModels.py", + "sha256": "bc1660731995d78ff841bd06a6f3209579ecddc649daa7572c0e5b73a2fce55f", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 8615 + }, + { + "path": "Models/EvaluateModel.py", + "sha256": "e4aa74a9da716a6a569fb888f7aa83104681c11853cd747e4ede9cb4a831d6fc", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 9, + "row": 10535 + }, + { + "path": "Models/PlotTrainValCurves.py", + "sha256": "1469c32ee38a2e6a23581f932e6216bdad7ad37cc0bc59e8a16dbe5091992bb2", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 8261 + }, + { + "path": "Models/TrainModel.py", + "sha256": "119b7ee55f15b80b66771dda725e45dc0a9ee3361d1df1eba1a71263c86bf412", + "language": "Python", + "lines": 243, + "truncated": false, + "block": 9, + "row": 10770 + }, + { + "path": "XAI/GradCAMAnalysis.py", + "sha256": "9d4f612ec52eb6f4f61155dc2848e3137526e7a0c705cccead27a75f7858bdb4", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 9064 + }, + { + "path": "XAI/OcclusionAnalysis.py", + "sha256": "dc4cf489497ca2389c6af431633e777649a6f52ed444e92b23a5284cb944b976", + "language": "Python", + "lines": 157, + "truncated": false, + "block": 9, + "row": 10204 + }, + { + "path": "XAI/Occlusion_GradCAM_AttributionMaps.py", + "sha256": "31c767476c018d7d31b511c3e5cb42eedce05f841b169e61fcd2353d8d2933d9", + "language": "Python", + "lines": 224, + "truncated": false, + "block": 9, + "row": 10869 + } + ] +} \ No newline at end of file diff --git a/manifests/97/zenodo__15319198.json b/manifests/97/zenodo__15319198.json new file mode 100644 index 0000000000000000000000000000000000000000..c5278e413ab35933a7947ff1f02991067721ef21 --- /dev/null +++ b/manifests/97/zenodo__15319198.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:15319198", + "url": "10.5281/ZENODO.15319198", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Human Neocortex data preparation.ipynb", + "sha256": "99fa61b540c7d3bb719382f79d33ad00b7c0a48e807e6fb038d622dce706f330", + "language": "Jupyter", + "lines": 125, + "truncated": false, + "block": 9, + "row": 2312 + }, + { + "path": "NS-Forest markers for human neocortex cross-area subclass.ipynb", + "sha256": "dd16c1820745707729be609fa67864bac3a01e5d072d433477f7ea098f5fbc51", + "language": "Jupyter", + "lines": 109, + "truncated": false, + "block": 9, + "row": 2328 + } + ] +} \ No newline at end of file diff --git a/manifests/9a/github.com__gizemozd__anipose.json b/manifests/9a/github.com__gizemozd__anipose.json new file mode 100644 index 0000000000000000000000000000000000000000..681742df52762e9d6be5dc1d04b19e8bde4c7e4c --- /dev/null +++ b/manifests/9a/github.com__gizemozd__anipose.json @@ -0,0 +1,264 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/gizemozd/anipose", + "url": "https://github.com/gizemozd/anipose/tree/master", + "host": "github.com", + "commit": "eb23f2ddde8d50b030c2195f475ab8aef370bfd5", + "license": "BSD-2-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "18fad8399204ed08ba88a4330a6ff8ae77879739e81c1e7503df88bab218f6ee", + "language": "License", + "lines": 25, + "truncated": false, + "block": 9, + "row": 2872 + }, + { + "path": "README.md", + "sha256": "96b2d3f0d52e1fafb091296596d807dca099f186775b92e0e342f037beb46904", + "language": "Text", + "lines": 37, + "truncated": false, + "block": 9, + "row": 14503 + }, + { + "path": "anipose/__init__.py", + "sha256": "8d32b23502318d027070daf1be78d33330ce36e5ce17f53912c0d71731feb1a3", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 9, + "row": 6339 + }, + { + "path": "anipose/anipose.py", + "sha256": "e6ada2b5cc7418219e4cf00aae0961f279cac040483d61ec9fb829b234701f32", + "language": "Python", + "lines": 404, + "truncated": false, + "block": 9, + "row": 10950 + }, + { + "path": "anipose/calibrate.py", + "sha256": "54bd0875364d3509b92b9bd2ee506012cdf09b023c9d2498c11c9b7e9794ba72", + "language": "Python", + "lines": 230, + "truncated": false, + "block": 9, + "row": 10458 + }, + { + "path": "anipose/calibration_errors.py", + "sha256": "efe9f509b14597f2db5d507d793baf296b50cb632080caa34bb58624f4ea966d", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 9, + "row": 9987 + }, + { + "path": "anipose/common.py", + "sha256": "9bbcc7a29c2c1d48e020a84d08927c671fdd66088f8f93700e9e193de12ccf6b", + "language": "Python", + "lines": 228, + "truncated": false, + "block": 9, + "row": 9949 + }, + { + "path": "anipose/compute_angles.py", + "sha256": "72d83bf72032e3e738f897c5945c7c9bc85e5146a4eda61e209f4db798050d0c", + "language": "Python", + "lines": 189, + "truncated": false, + "block": 9, + "row": 9626 + }, + { + "path": "anipose/convert_videos.py", + "sha256": "42b350c8822e95027ae858eee10c82ecb67b5a22bf48ebe314ae7312b7e37658", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 8058 + }, + { + "path": "anipose/extract_frames.py", + "sha256": "c0209d656f00080b3f50fc69d128d6a28f78efcc91af9a203697ef1c510031aa", + "language": "Python", + "lines": 546, + "truncated": false, + "block": 9, + "row": 11679 + }, + { + "path": "anipose/filter_3d.py", + "sha256": "0d9765cffeede6bbff71d2a5089a425eeb7154746d9ad658961449390942327c", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8195 + }, + { + "path": "anipose/filter_pose.py", + "sha256": "01266a7841281b529fec0830c6bf6d055207594a664c175f53e845d42bf86064", + "language": "Python", + "lines": 391, + "truncated": false, + "block": 9, + "row": 11161 + }, + { + "path": "anipose/label_combined.py", + "sha256": "2647ff32ef46b686c2c9a58c1e4619a5e3966e77b13cbdee4c358e4773c66b7d", + "language": "Python", + "lines": 514, + "truncated": false, + "block": 9, + "row": 11591 + }, + { + "path": "anipose/label_filter_compare.py", + "sha256": "ba3dc36c4d041ef2b3c4c2733633bc8bcc1edf1cd0dbbb7a7f1a529ec1456b8d", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 9, + "row": 9884 + }, + { + "path": "anipose/label_videos.py", + "sha256": "5f1a41c6cf237812aeb58edeac9b082c2d3951d3223d16d9f4d1c1084ceaec70", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 9, + "row": 9412 + }, + { + "path": "anipose/label_videos_3d.py", + "sha256": "16032107ef88c36e720a680d468677f2798286fe3a154885bea695c2cf20a197", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 9, + "row": 9864 + }, + { + "path": "anipose/label_videos_proj.py", + "sha256": "768753446b1a725d8760413b91f0ce0f013ff6409d7ccffc7239e53b29b9b768", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 9, + "row": 9146 + }, + { + "path": "anipose/pose_videos.py", + "sha256": "08597e74e92757efef33d9da11f5df235dc756ef078b3ead5d74a7cd0ad3b6a7", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8171 + }, + { + "path": "anipose/project_2d.py", + "sha256": "8b794aa25b7a04d99ad334928e4bdf114204825243894fc8cc08b6e71a2f7113", + "language": "Python", + "lines": 163, + "truncated": false, + "block": 9, + "row": 9646 + }, + { + "path": "anipose/server.py", + "sha256": "6af214b28156e923ad4d43ae5b14e28a67d546444a3177b7fabff4b995a7458e", + "language": "Python", + "lines": 476, + "truncated": false, + "block": 9, + "row": 11467 + }, + { + "path": "anipose/static/script.js", + "sha256": "3da409040f90aff3b4529db7dcd5ddb13b4fe6f9547be324170c67a950648483", + "language": "JavaScript", + "lines": 2030, + "truncated": false, + "block": 9, + "row": 2120 + }, + { + "path": "anipose/summarize.py", + "sha256": "0797aa1a709ea56d04cd7d26027ab8da3dd27106548fc260c16b79a2fce72a41", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 9, + "row": 9308 + }, + { + "path": "anipose/tracking_errors.py", + "sha256": "de4b3596f5cd2be21c139d4c3a48e28dc94636a3e5808404fd7e7805c9f879c2", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 9, + "row": 10029 + }, + { + "path": "anipose/train_autoencoder.py", + "sha256": "712930080b3000387c646901ba3588f7e7a884c09a6f9b49aa0b440285d7f002", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 8672 + }, + { + "path": "anipose/triangulate.py", + "sha256": "215632cb73d3456a8d1f895b90b7d3751829ba74a5c49069256769faf78227ab", + "language": "Python", + "lines": 380, + "truncated": false, + "block": 9, + "row": 11281 + }, + { + "path": "docs/sphinx/conf.py", + "sha256": "2f614b1bb1fd09c7f553f1e9df3c0b8fb26e3f3ef51ea13ac3113043b0f133c8", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 8014 + }, + { + "path": "release.sh", + "sha256": "d62a06a3b077c647d9f4aeada5a2698e34b17ae55dc251605e4a313da8efac9a", + "language": "Shell", + "lines": 5, + "truncated": false, + "block": 9, + "row": 13896 + }, + { + "path": "setup.py", + "sha256": "cbaeee37f2da8acce7c49f6fecb1d58fa3f4abc0a7f081c31781c5e0efb993dd", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7254 + } + ] +} \ No newline at end of file diff --git a/manifests/9a/github.com__google__yggdrasil-decision-forests.json b/manifests/9a/github.com__google__yggdrasil-decision-forests.json new file mode 100644 index 0000000000000000000000000000000000000000..7f96da4c7b44870ca99fe430e4ec4459f7a99573 --- /dev/null +++ b/manifests/9a/github.com__google__yggdrasil-decision-forests.json @@ -0,0 +1,8031 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/google/yggdrasil-decision-forests", + "url": "https://github.com/google/yggdrasil-decision-forests", + "host": "github.com", + "commit": "240fd063a047033d683d739c7b5b2f556cf7a5a9", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "1d8a45748fbf7ce319d427d31109fcabb69025019025addc6378c41c9f095d50", + "language": "License", + "lines": 247, + "truncated": false, + "block": 9, + "row": 2907 + }, + { + "path": "README.md", + "sha256": "9981c80027f51a8c17ee8c7d3d77ef8978a77bcb7a915a762252ecf1605726ae", + "language": "Text", + "lines": 145, + "truncated": false, + "block": 9, + "row": 14619 + }, + { + "path": "documentation/public/copy_external.py", + "sha256": "57d96630ab11bb4b898edc8ffdc60561fc134a68f99ffe415fe245cad6a80b37", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7641 + }, + { + "path": "documentation/public/docs/js/mathjax.js", + "sha256": "b0a01dad6fd180157778d878b0c27ac46be70f628e9cf5a00fdae1fe7e9dc09d", + "language": "JavaScript", + "lines": 26, + "truncated": false, + "block": 9, + "row": 2032 + }, + { + "path": "documentation/public/docs/tutorial/anomaly_detection.ipynb", + "sha256": "252b9668c6f7cc5deb48ffc3f164e4829df3760ee5ffad18060ef4813b6abbc2", + "language": "Jupyter", + "lines": 193, + "truncated": false, + "block": 9, + "row": 2459 + }, + { + "path": "documentation/public/docs/tutorial/categorical_feature.ipynb", + "sha256": "4baced9179ab7a0f85896325e80327f7009adf4ce057352064166ff5ed2e0d3b", + "language": "Jupyter", + "lines": 55, + "truncated": false, + "block": 9, + "row": 2240 + }, + { + "path": "documentation/public/docs/tutorial/categorical_set_feature.ipynb", + "sha256": "d49cd3bedd5431e0f61e8e971a38ed61316f31c61a50208794aeb9b23da9518e", + "language": "Jupyter", + "lines": 152, + "truncated": false, + "block": 9, + "row": 2362 + }, + { + "path": "documentation/public/docs/tutorial/classification.ipynb", + "sha256": "3ef13679c2b4102207f820cd8bc971b7cdca802e9139ed0326fcfcc08fa6366a", + "language": "Jupyter", + "lines": 94, + "truncated": false, + "block": 9, + "row": 2329 + }, + { + "path": "documentation/public/docs/tutorial/compose_with_jax.ipynb", + "sha256": "3bb70f54b61806b88f1254fb7ceaf11f04eb65e65bda137be38b429149648647", + "language": "Jupyter", + "lines": 362, + "truncated": false, + "block": 9, + "row": 2547 + }, + { + "path": "documentation/public/docs/tutorial/compose_with_tf.ipynb", + "sha256": "8fa8031bc2a798846155f1335bcc0ed1638702d5ab028ee8b51eb6e8450d4de7", + "language": "Jupyter", + "lines": 330, + "truncated": false, + "block": 9, + "row": 2552 + }, + { + "path": "documentation/public/docs/tutorial/compose_with_tf_plots.ipynb", + "sha256": "2b1f360b728e1eb62b346148a9e74caf81fdfd245c5c82b7d3c0f6d260a88206", + "language": "Jupyter", + "lines": 43, + "truncated": false, + "block": 9, + "row": 2197 + }, + { + "path": "documentation/public/docs/tutorial/counterfactual.ipynb", + "sha256": "6a7a8d995e4313bd72b4d4529dba3d723334135782824c7c52526a56885741f1", + "language": "Jupyter", + "lines": 217, + "truncated": false, + "block": 9, + "row": 2456 + }, + { + "path": "documentation/public/docs/tutorial/cpp.ipynb", + "sha256": "f6a1f0e05c6b9ec5edbb38420c824eb016021c1844117ad72b6bd0643fa4ede1", + "language": "Jupyter", + "lines": 81, + "truncated": false, + "block": 9, + "row": 2277 + }, + { + "path": "documentation/public/docs/tutorial/cpp_standalone.ipynb", + "sha256": "5871472ba37acee998f57560bbad264d05ade553887b6f5a8c5063b497b68150", + "language": "Jupyter", + "lines": 237, + "truncated": false, + "block": 9, + "row": 2442 + }, + { + "path": "documentation/public/docs/tutorial/cross_validation.ipynb", + "sha256": "5421722b258abcce194ff39a8ba90914a820ddc90905a3b3f64d6231da917c20", + "language": "Jupyter", + "lines": 36, + "truncated": false, + "block": 9, + "row": 2211 + }, + { + "path": "documentation/public/docs/tutorial/custom_loss.ipynb", + "sha256": "665f2ebe395594c3af40348ae2bcba5bb3fdefa202e24cda503fe4c62eef8378", + "language": "Jupyter", + "lines": 293, + "truncated": false, + "block": 9, + "row": 2521 + }, + { + "path": "documentation/public/docs/tutorial/distributed_training.ipynb", + "sha256": "3c77550d0928bacd39b948f7cab4861ada642af186f19328a93c9a92f6da3cf2", + "language": "Jupyter", + "lines": 137, + "truncated": false, + "block": 9, + "row": 2394 + }, + { + "path": "documentation/public/docs/tutorial/distributed_training_vertex_ai.ipynb", + "sha256": "2c29700b26a52b2e0f5341910b1d064e89e950f50e4ea95055bcde649adf16c3", + "language": "Jupyter", + "lines": 374, + "truncated": false, + "block": 9, + "row": 2564 + }, + { + "path": "documentation/public/docs/tutorial/editing_trees.ipynb", + "sha256": "93f466879dc2054518656549af14f9afed84e33b8b41a9b58357f7b502100776", + "language": "Jupyter", + "lines": 159, + "truncated": false, + "block": 9, + "row": 2341 + }, + { + "path": "documentation/public/docs/tutorial/feature_selection.ipynb", + "sha256": "1a257ead93a51f9423777c9e97e6430b864f7f2d413090b9ac6ac27725dcd12a", + "language": "Jupyter", + "lines": 134, + "truncated": false, + "block": 9, + "row": 2384 + }, + { + "path": "documentation/public/docs/tutorial/getting_started.ipynb", + "sha256": "09a7ca1a03888900a0b5188abb21d0e9c460376817d1fe7dd3e1ffb7f8ce1117", + "language": "Jupyter", + "lines": 181, + "truncated": false, + "block": 9, + "row": 2426 + }, + { + "path": "documentation/public/docs/tutorial/inspecting_trees.ipynb", + "sha256": "e8ce8e8e717e4955519df504f38ba001993f2b3d4b279a3ead0090efe4633a90", + "language": "Jupyter", + "lines": 74, + "truncated": false, + "block": 9, + "row": 2238 + }, + { + "path": "documentation/public/docs/tutorial/java_standalone.ipynb", + "sha256": "1bef1bc4c6606a2e27f71991a32c0674d6f2a2c5ba6bb07db0d91e0df8a1791a", + "language": "Jupyter", + "lines": 202, + "truncated": false, + "block": 9, + "row": 2431 + }, + { + "path": "documentation/public/docs/tutorial/log_book.ipynb", + "sha256": "b7f7f3969e2b6453f58d63e7e8b8ee1015eca4fd3eda51d549c0679b2c06007d", + "language": "Jupyter", + "lines": 228, + "truncated": false, + "block": 9, + "row": 2452 + }, + { + "path": "documentation/public/docs/tutorial/migrating_to_ydf.ipynb", + "sha256": "ac87ca5cda9ad8870352b0ee8f3825e7362d3c4b6593657716a69ac474082bc8", + "language": "Jupyter", + "lines": 200, + "truncated": false, + "block": 9, + "row": 2327 + }, + { + "path": "documentation/public/docs/tutorial/model_understanding.ipynb", + "sha256": "903c69ef8d75e0598b48cda605874193a4271120c0be6c64e677d4443b86c082", + "language": "Jupyter", + "lines": 114, + "truncated": false, + "block": 9, + "row": 2380 + }, + { + "path": "documentation/public/docs/tutorial/monotonic_feature.ipynb", + "sha256": "d39a4a6deda256b1cba0ce319fbd4acd221351b7043014a1fc83bbb6770ddd84", + "language": "Jupyter", + "lines": 50, + "truncated": false, + "block": 9, + "row": 2257 + }, + { + "path": "documentation/public/docs/tutorial/multidimensional_feature.ipynb", + "sha256": "203e02a070c5f09f363c2b77d62a1e44b2c9bdcaa3b008925135c39a5fa8e831", + "language": "Jupyter", + "lines": 70, + "truncated": false, + "block": 9, + "row": 2248 + }, + { + "path": "documentation/public/docs/tutorial/numerical_feature.ipynb", + "sha256": "3d9ad1dba3cfb44a0394a074fb2ba49871289c1fdf4c0271ba201df73e2fa5ef", + "language": "Jupyter", + "lines": 69, + "truncated": false, + "block": 9, + "row": 2253 + }, + { + "path": "documentation/public/docs/tutorial/numerical_vector_sequence.ipynb", + "sha256": "aece6447dd029ca4a1cdc75ececc2ca34e1b22a2cbf9d648fd7475ec3adae67a", + "language": "Jupyter", + "lines": 254, + "truncated": false, + "block": 9, + "row": 2470 + }, + { + "path": "documentation/public/docs/tutorial/numpy.ipynb", + "sha256": "0a9fc41aee564381c1f475498cf3dab01b06d1dfe6c72f89a070ad209ee82a6e", + "language": "Jupyter", + "lines": 60, + "truncated": false, + "block": 9, + "row": 2223 + }, + { + "path": "documentation/public/docs/tutorial/pandas.ipynb", + "sha256": "49b22eeb8440861e0d4ce60df60cf4eb936499650274db027d4eeedf05a4e6d1", + "language": "Jupyter", + "lines": 84, + "truncated": false, + "block": 9, + "row": 2268 + }, + { + "path": "documentation/public/docs/tutorial/prediction_understanding.ipynb", + "sha256": "6f93f8caaeb8a92feb37d8424efe580b5f2c61fdedb095b16af33fe1745b5bac", + "language": "Jupyter", + "lines": 52, + "truncated": false, + "block": 9, + "row": 2235 + }, + { + "path": "documentation/public/docs/tutorial/pretrained_embedding.ipynb", + "sha256": "d56cd96f5b71a5fbb1827c47120aa7d35780ef4079a486fc972cd75ac197e532", + "language": "Jupyter", + "lines": 104, + "truncated": false, + "block": 9, + "row": 2340 + }, + { + "path": "documentation/public/docs/tutorial/ranking.ipynb", + "sha256": "3fbd213f09d9f1582596df7a6284203bc6c8be2830949cf8ebbc3dad300c6f5b", + "language": "Jupyter", + "lines": 73, + "truncated": false, + "block": 9, + "row": 2306 + }, + { + "path": "documentation/public/docs/tutorial/regression.ipynb", + "sha256": "055b64e1e69c79ad32cb9440ae47d9b104ec8245c86c0b98d7d18d9c514f43e3", + "language": "Jupyter", + "lines": 66, + "truncated": false, + "block": 9, + "row": 2229 + }, + { + "path": "documentation/public/docs/tutorial/tf_dataset.ipynb", + "sha256": "3e434faa4144dafd2d70f380e6d0fa793fe139c67e827193fbb186166e862297", + "language": "Jupyter", + "lines": 98, + "truncated": false, + "block": 9, + "row": 2334 + }, + { + "path": "documentation/public/docs/tutorial/tf_serving.ipynb", + "sha256": "1592b14bca92786000cbe0c249d4e6e1dea604d89cc95d3c009e517159f61a57", + "language": "Jupyter", + "lines": 318, + "truncated": false, + "block": 9, + "row": 2595 + }, + { + "path": "documentation/public/docs/tutorial/time_sequences.ipynb", + "sha256": "96f40f01e8ad26a4927fc0a5a10fbf9c6d692fafe4e97e2ab27f68c864bf9c82", + "language": "Jupyter", + "lines": 196, + "truncated": false, + "block": 9, + "row": 2455 + }, + { + "path": "documentation/public/docs/tutorial/to_docker.ipynb", + "sha256": "fd7c4362c2f08f4e54251228328b066e996e3341585389536b12d1b16832bf13", + "language": "Jupyter", + "lines": 99, + "truncated": false, + "block": 9, + "row": 2286 + }, + { + "path": "documentation/public/docs/tutorial/train_and_test.ipynb", + "sha256": "aa5261ca9e4fb6d1c917d6ad3203811df3d8d1f74956152ed40d19b51785bb96", + "language": "Jupyter", + "lines": 52, + "truncated": false, + "block": 9, + "row": 2230 + }, + { + "path": "documentation/public/docs/tutorial/tuning.ipynb", + "sha256": "057551cb20ac1cd9dcb7bd9f7f0caffa4fc098de0963a13dda71cdd68853d944", + "language": "Jupyter", + "lines": 145, + "truncated": false, + "block": 9, + "row": 2371 + }, + { + "path": "documentation/public/docs/tutorial/uplifting.ipynb", + "sha256": "dfe6bbe23addfc800a85abffccda615c1461fc6486940483c07ab821419ce753", + "language": "Jupyter", + "lines": 83, + "truncated": false, + "block": 9, + "row": 2331 + }, + { + "path": "documentation/public/docs/tutorial/usage_example.ipynb", + "sha256": "6fa9bfde1e161d753547bde88e85f8111e4d630cae1a87627d2509b7fdf0adee", + "language": "Jupyter", + "lines": 44, + "truncated": false, + "block": 9, + "row": 2208 + }, + { + "path": "documentation/public/docs/tutorial/xarray.ipynb", + "sha256": "c464099dadb6a3c27d7ded542baa469b21881974f58e21a6c328d005ba1f8dcf", + "language": "Jupyter", + "lines": 43, + "truncated": false, + "block": 9, + "row": 2205 + }, + { + "path": "documentation/public/update_scs_paths.py", + "sha256": "07d7bd30188ca3ad0226e1b84e1fdb4ab2de2394e89b11f69869f2981fafa99d", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7223 + }, + { + "path": "examples/beginner.cc", + "sha256": "2337d22c6c910dfef07263867c7d07e0b765883eca502d6f0e1447b8a8df5b5b", + "language": "C++", + "lines": 207, + "truncated": false, + "block": 9, + "row": 674 + }, + { + "path": "examples/beginner.sh", + "sha256": "dd445ae4ce27e691d183368ac57feed7fb227adbddc53d71b743c6bbce39bcb3", + "language": "Shell", + "lines": 115, + "truncated": false, + "block": 9, + "row": 14327 + }, + { + "path": "examples/distributed_training.sh", + "sha256": "9d5d8e939688bf39b086e923989181420bef4515146d5139766d6a1176fb5c22", + "language": "Shell", + "lines": 151, + "truncated": false, + "block": 9, + "row": 14350 + }, + { + "path": "examples/fast_8bits_numerical.cc", + "sha256": "f9fababc99817ad1b5e1067237d05185df47cbd54fe6eca5f3a049538cf8f785", + "language": "C++", + "lines": 218, + "truncated": false, + "block": 9, + "row": 687 + }, + { + "path": "examples/hyperparameter_sweep/manager_main.cc", + "sha256": "d3cb8162cc46a081560dfd0b5792d176f5f2a45c8b543d23988523d709f23c1d", + "language": "C++", + "lines": 246, + "truncated": false, + "block": 9, + "row": 722 + }, + { + "path": "examples/hyperparameter_sweep/plot_results.ipynb", + "sha256": "005c5aa2071c69c36cdba2495430947969c5c3e8dbf1d570bb2b0772abe46c98", + "language": "Jupyter", + "lines": 115, + "truncated": false, + "block": 9, + "row": 2291 + }, + { + "path": "examples/hyperparameter_sweep/prepare_data.py", + "sha256": "29b94aa15e5bdcf39d0b90cd84b3774e775f601292a3337e194770d27025d687", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7918 + }, + { + "path": "examples/hyperparameter_sweep/run_local.sh", + "sha256": "7577922b161f6585d4ab3753929447fc2c3d0e514aa2e6cddd41b9981b7f8b0d", + "language": "Shell", + "lines": 36, + "truncated": false, + "block": 9, + "row": 14187 + }, + { + "path": "examples/hyperparameter_sweep/worker.cc", + "sha256": "6c31ad92e014dd4d4e84bb3a415496c097c63f40d3877f8bec7f9c56c6f5a666", + "language": "C++", + "lines": 197, + "truncated": false, + "block": 9, + "row": 637 + }, + { + "path": "examples/hyperparameter_tuning.sh", + "sha256": "1366fa8431c92adf5fb6df34a236d658e4e99a93cb57d94b6ad58ed560c8a43c", + "language": "Shell", + "lines": 210, + "truncated": false, + "block": 9, + "row": 14369 + }, + { + "path": "examples/standalone/beginner.cc", + "sha256": "c3fe797b1c14c5dab4ae7a08fab8b4b05a53977e22aac4c03795090b930bca7b", + "language": "C++", + "lines": 192, + "truncated": false, + "block": 9, + "row": 659 + }, + { + "path": "examples/standalone/compile_and_run.sh", + "sha256": "91253baf1d605c46d2c526a9dc6eb11c83b620f595fd9dc5087ede39e70f843d", + "language": "Shell", + "lines": 35, + "truncated": false, + "block": 9, + "row": 14184 + }, + { + "path": "examples/text_classification.sh", + "sha256": "b0ed874de534d6e5c8935c3654607af82ac59044d83bdc645192c2566e350320", + "language": "Shell", + "lines": 136, + "truncated": false, + "block": 9, + "row": 14332 + }, + { + "path": "examples/vizier_tuning_python/main.py", + "sha256": "a93445111ebe15b46fffc4908bbad7630018142f786ac8defbd2d47b9019adee", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 9, + "row": 10091 + }, + { + "path": "tools/build_binary_release.sh", + "sha256": "c325033f369a1eb2f7079ceec03b51ef3b13b531b28368d117ee6ed72e912991", + "language": "Shell", + "lines": 100, + "truncated": false, + "block": 9, + "row": 14278 + }, + { + "path": "tools/build_binary_release_in_docker.sh", + "sha256": "fee8556e360a7fd24ef22e08faaf391d4926c6217840a62b7736f2edaf401c55", + "language": "Shell", + "lines": 36, + "truncated": false, + "block": 9, + "row": 14149 + }, + { + "path": "tools/generate_go_proto_wrappers.sh", + "sha256": "a9946174fc520160810c8365c344d55f3d1a9a340b20f6d67ece8da7d095c9bd", + "language": "Shell", + "lines": 137, + "truncated": false, + "block": 9, + "row": 14356 + }, + { + "path": "tools/https_server.py", + "sha256": "903487a9e2527335b1a47d43a0a7382ea3019afea39d2732bf4fcb413ed3d89a", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 8001 + }, + { + "path": "tools/test_bazel.sh", + "sha256": "740d09a81b433dd56ce38b37b28f14d74b08049dd447ed00c88f1b97f2130a14", + "language": "Shell", + "lines": 83, + "truncated": false, + "block": 9, + "row": 14272 + }, + { + "path": "tools/test_go.sh", + "sha256": "c047f5853c5599cfd80de08a53cb51dcc67537747261aaa75d535a1825d8ac8c", + "language": "Shell", + "lines": 25, + "truncated": false, + "block": 9, + "row": 14114 + }, + { + "path": "tools/test_windows.sh", + "sha256": "58f32b769ae735ce9e6cece92cf099a1e6c1a64031a4d081741c0cc31958a53e", + "language": "Shell", + "lines": 66, + "truncated": false, + "block": 9, + "row": 14258 + }, + { + "path": "yggdrasil_decision_forests/api/serving.h", + "sha256": "cd686f37a9eb2f1075089fd725fc2a40b66f028eb198fb23de5d361a62f216ad", + "language": "C/C++", + "lines": 91, + "truncated": false, + "block": 9, + "row": 1471 + }, + { + "path": "yggdrasil_decision_forests/api/training.h", + "sha256": "570a2d4c26e3bbfbc39595387d2e2ac3f4298edae728916bc40e332fa4654765", + "language": "C/C++", + "lines": 106, + "truncated": false, + "block": 9, + "row": 1522 + }, + { + "path": "yggdrasil_decision_forests/cli/analyze_model_and_dataset.cc", + "sha256": "35394f746b4590d701b0893c4bdf218820975a84a90fc4d744a0ea17b136b1b1", + "language": "C++", + "lines": 91, + "truncated": false, + "block": 9, + "row": 405 + }, + { + "path": "yggdrasil_decision_forests/cli/benchmark_inference.cc", + "sha256": "243fc7e3c2d55dab57bace60012357b4011b60ed98deb6c4a6fd406bd074a936", + "language": "C++", + "lines": 192, + "truncated": false, + "block": 9, + "row": 651 + }, + { + "path": "yggdrasil_decision_forests/cli/cli_test.sh", + "sha256": "34eaca497b766ecefe780f51c1353f12119a82857728d9d21408e0f7693a208e", + "language": "Shell", + "lines": 98, + "truncated": false, + "block": 9, + "row": 14309 + }, + { + "path": "yggdrasil_decision_forests/cli/compute_variable_importances.cc", + "sha256": "01c26182889343f0e60fad638e858d5bb1ee6f260c264cef50093965dba050c9", + "language": "C++", + "lines": 103, + "truncated": false, + "block": 9, + "row": 477 + }, + { + "path": "yggdrasil_decision_forests/cli/convert_dataset.cc", + "sha256": "6b0e9dae979c879b6a65fd84414c412670c1b39d4eb7640581bb955340816aa7", + "language": "C++", + "lines": 129, + "truncated": false, + "block": 9, + "row": 513 + }, + { + "path": "yggdrasil_decision_forests/cli/edit_model.cc", + "sha256": "32b340f431cc92dace435118da881ae97f73c8df2a512668bfbcc4c7bb733bc7", + "language": "C++", + "lines": 133, + "truncated": false, + "block": 9, + "row": 528 + }, + { + "path": "yggdrasil_decision_forests/cli/evaluate.cc", + "sha256": "2bd3a4677bf32e7115fc451effa5eb244fac6a2b80ab0b340257e75d801c4e4a", + "language": "C++", + "lines": 116, + "truncated": false, + "block": 9, + "row": 463 + }, + { + "path": "yggdrasil_decision_forests/cli/infer_dataspec.cc", + "sha256": "52c81799bf465e254082f2e175e7596301450e551941644a7eca4066b0df29aa", + "language": "C++", + "lines": 80, + "truncated": false, + "block": 9, + "row": 360 + }, + { + "path": "yggdrasil_decision_forests/cli/monitoring/benchmark_training.cc", + "sha256": "c8e5e5c622ca971e80248826cbe1cdf0cd05fcb28a01e57ab382d4d312ea06a1", + "language": "C++", + "lines": 976, + "truncated": false, + "block": 9, + "row": 1020 + }, + { + "path": "yggdrasil_decision_forests/cli/monitoring/compare_benchmark.py", + "sha256": "10b9becf324dfd9f84d7d9028a464bda569230842fa017ff127fb946995a2ac4", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 7930 + }, + { + "path": "yggdrasil_decision_forests/cli/monitoring/run_benchmark_training.sh", + "sha256": "d871957d70c6312f8d2b7baa3cc4af9f984a9cf6f387c4ff483d27098a1512cc", + "language": "Shell", + "lines": 33, + "truncated": false, + "block": 9, + "row": 14180 + }, + { + "path": "yggdrasil_decision_forests/cli/predict.cc", + "sha256": "e840e408f64ac8c6579d72eb0d5cb4e6feb667f5592daf056e97d21d9525c2bc", + "language": "C++", + "lines": 213, + "truncated": false, + "block": 9, + "row": 679 + }, + { + "path": "yggdrasil_decision_forests/cli/show_dataspec.cc", + "sha256": "76b27cf0d76c6ca6aacf99bc539d6c291dced1e079004061ebd7bd3d39de8245", + "language": "C++", + "lines": 70, + "truncated": false, + "block": 9, + "row": 326 + }, + { + "path": "yggdrasil_decision_forests/cli/show_model.cc", + "sha256": "dc02bbcdf7fba4db4ceef7402fca465a4022863eeded2f9e7ed9c6704b27d470", + "language": "C++", + "lines": 154, + "truncated": false, + "block": 9, + "row": 574 + }, + { + "path": "yggdrasil_decision_forests/cli/train.cc", + "sha256": "53cd4848d4c32769f31c0674ad73eaefcac50839c97b6e38b2c16bdc6203ca63", + "language": "C++", + "lines": 141, + "truncated": false, + "block": 9, + "row": 573 + }, + { + "path": "yggdrasil_decision_forests/cli/utils/synthetic_dataset.cc", + "sha256": "0385cb58d2616b43c51e2b28625c86f9ea9e0c170f78379ca9d8df9b33545419", + "language": "C++", + "lines": 103, + "truncated": false, + "block": 9, + "row": 416 + }, + { + "path": "yggdrasil_decision_forests/dataset/avro.cc", + "sha256": "d2522053d28f5bb717b03ba5df8a7fe2c2f5125cfbbdb5f6e7bc56fe42bbec06", + "language": "C++", + "lines": 687, + "truncated": false, + "block": 9, + "row": 951 + }, + { + "path": "yggdrasil_decision_forests/dataset/avro.h", + "sha256": "97ac41064c3850e7d412987b81f4a018e48937f3d121e9cfa18a885d10e861cc", + "language": "C/C++", + "lines": 190, + "truncated": false, + "block": 9, + "row": 1620 + }, + { + "path": "yggdrasil_decision_forests/dataset/avro_example.cc", + "sha256": "72ae66e792182808ada668f3488cb19e77d3b7333cc1dedd1f9a64d0030c58e5", + "language": "C++", + "lines": 915, + "truncated": false, + "block": 9, + "row": 1012 + }, + { + "path": "yggdrasil_decision_forests/dataset/avro_example.h", + "sha256": "d0cbbb3f669822ac03972b54ca0b98053613567a206904e3d292fe11cb112ba0", + "language": "C/C++", + "lines": 132, + "truncated": false, + "block": 9, + "row": 1541 + }, + { + "path": "yggdrasil_decision_forests/dataset/avro_example_test.cc", + "sha256": "d76d36a6d13434bca3f05683f0ebc2b38beb572e5465fd5164851ede7c2fb5a4", + "language": "C++", + "lines": 648, + "truncated": false, + "block": 9, + "row": 922 + }, + { + "path": "yggdrasil_decision_forests/dataset/avro_test.cc", + "sha256": "a6f3fc25bad74eeb7f93c7936d1cb5d4a930461a5fa9917d65c2fa333315f462", + "language": "C++", + "lines": 348, + "truncated": false, + "block": 9, + "row": 867 + }, + { + "path": "yggdrasil_decision_forests/dataset/csv_example_reader.cc", + "sha256": "7ec562fea14c92808d5fe3ec5982ca4e812a223360888868fbc2b911f84bb338", + "language": "C++", + "lines": 443, + "truncated": false, + "block": 9, + "row": 892 + }, + { + "path": "yggdrasil_decision_forests/dataset/csv_example_reader.h", + "sha256": "b2dc4c1d33ee5012767600b44bf818dfcdd1f81537e08cd00f9d16483077f7fd", + "language": "C/C++", + "lines": 124, + "truncated": false, + "block": 9, + "row": 1529 + }, + { + "path": "yggdrasil_decision_forests/dataset/csv_example_writer.cc", + "sha256": "757a932234a5cf30ab28a5a5ecdc3c542e48611dc322cbc0ff35579ab77589bb", + "language": "C++", + "lines": 64, + "truncated": false, + "block": 9, + "row": 328 + }, + { + "path": "yggdrasil_decision_forests/dataset/csv_example_writer.h", + "sha256": "15253c67d3beb73049fe472fef649968581130d86ee5615909b63cf08d409925", + "language": "C/C++", + "lines": 82, + "truncated": false, + "block": 9, + "row": 1378 + }, + { + "path": "yggdrasil_decision_forests/dataset/data_spec.cc", + "sha256": "8d56e1ad2681b31aed95ba51033fc50f79a338b46971e7a1ec1064076e11ca92", + "language": "C++", + "lines": 1046, + "truncated": false, + "block": 9, + "row": 1026 + }, + { + "path": "yggdrasil_decision_forests/dataset/data_spec.h", + "sha256": "bca8b464eb2d4b8e90c5b87446d1d08e2d7fe52f633a090ba6531bafa8d1aa7c", + "language": "C/C++", + "lines": 259, + "truncated": false, + "block": 9, + "row": 1722 + }, + { + "path": "yggdrasil_decision_forests/dataset/data_spec_inference.cc", + "sha256": "cec045b0f53f40623e4919fdceea10585938e39f90889ac0b58c0f532a565fc6", + "language": "C++", + "lines": 839, + "truncated": false, + "block": 9, + "row": 998 + }, + { + "path": "yggdrasil_decision_forests/dataset/data_spec_inference.h", + "sha256": "f06cf9fdbb869b869f4d2b8e7c7059374f5081ff4722995dbbbba8624887c76c", + "language": "C/C++", + "lines": 218, + "truncated": false, + "block": 9, + "row": 1690 + }, + { + "path": "yggdrasil_decision_forests/dataset/data_spec_inference_test.cc", + "sha256": "2ac3e0e22f865158d86ae87753a074e173f40c70cbb6dddace7fb93a150bf9f4", + "language": "C++", + "lines": 1251, + "truncated": false, + "block": 9, + "row": 1024 + }, + { + "path": "yggdrasil_decision_forests/dataset/data_spec_test.cc", + "sha256": "1ac1233ae948764706c90d014a766c648b9b147d7d57e1b37327d0a7fab97ccf", + "language": "C++", + "lines": 727, + "truncated": false, + "block": 9, + "row": 984 + }, + { + "path": "yggdrasil_decision_forests/dataset/example_builder.cc", + "sha256": "343fc9d64a789df51ca7da964358d5f6fbbb046bae0725dd169899a21e311d06", + "language": "C++", + "lines": 83, + "truncated": false, + "block": 9, + "row": 400 + }, + { + "path": "yggdrasil_decision_forests/dataset/example_builder.h", + "sha256": "4b99ce1025efd9cf0b70de59c8c367876c5c6de4efe316cd0aea78597012c5dc", + "language": "C/C++", + "lines": 58, + "truncated": false, + "block": 9, + "row": 1311 + }, + { + "path": "yggdrasil_decision_forests/dataset/example_builder_test.cc", + "sha256": "899de1d6a62688e052a421d9b0958529dee8aef25b93ea4cc18e94069f121bee", + "language": "C++", + "lines": 61, + "truncated": false, + "block": 9, + "row": 311 + }, + { + "path": "yggdrasil_decision_forests/dataset/example_reader.cc", + "sha256": "d77db35446459d702b9ac7a74429d6cfb47e0a63d7222eea501bb6486f0ddc7a", + "language": "C++", + "lines": 72, + "truncated": false, + "block": 9, + "row": 363 + }, + { + "path": "yggdrasil_decision_forests/dataset/example_reader.h", + "sha256": "e90bce01713b3307ede63a06669260889da4a1c3683ebabbdf4bc543cd71afff", + "language": "C/C++", + "lines": 78, + "truncated": false, + "block": 9, + "row": 1410 + }, + { + "path": "yggdrasil_decision_forests/dataset/example_reader_interface.h", + "sha256": "c232d05d55b90fa020e1ad84a69118bc6e04e64534f1e9b695a5d4651eb5e6eb", + "language": "C/C++", + "lines": 56, + "truncated": false, + "block": 9, + "row": 1288 + }, + { + "path": "yggdrasil_decision_forests/dataset/example_reader_test.cc", + "sha256": "52fcd2f5b6874e6cb57a1b931d862f19ec91b8c6b406c8ec447262e8b090b183", + "language": "C++", + "lines": 99, + "truncated": false, + "block": 9, + "row": 443 + }, + { + "path": "yggdrasil_decision_forests/dataset/example_writer.cc", + "sha256": "aefe69354048cee6513f1b50dfb10861def621c929602fb0555d3ee39d345847", + "language": "C++", + "lines": 57, + "truncated": false, + "block": 9, + "row": 296 + }, + { + "path": "yggdrasil_decision_forests/dataset/example_writer.h", + "sha256": "08289755e00cb275fe01603da0b30f8a710372d429e7180802e5be1332e405b5", + "language": "C/C++", + "lines": 57, + "truncated": false, + "block": 9, + "row": 1293 + }, + { + "path": "yggdrasil_decision_forests/dataset/example_writer_interface.h", + "sha256": "28a3144736f56993edb44ca907cee7a4ab90a785880d0ea747a2b7ca5da0ef13", + "language": "C/C++", + "lines": 50, + "truncated": false, + "block": 9, + "row": 1255 + }, + { + "path": "yggdrasil_decision_forests/dataset/example_writer_test.cc", + "sha256": "a4a3a0b6c32ce32c5b8870be1bd477755b3a3bb7bd9a28978588842850dd8e53", + "language": "C++", + "lines": 94, + "truncated": false, + "block": 9, + "row": 391 + }, + { + "path": "yggdrasil_decision_forests/dataset/formats.cc", + "sha256": "3d20b955f18051ed9b28b65a70fee5d9ca29ec2c2d21a6715c7d09a8f1b07de6", + "language": "C++", + "lines": 185, + "truncated": false, + "block": 9, + "row": 600 + }, + { + "path": "yggdrasil_decision_forests/dataset/formats.h", + "sha256": "2820f21b7e4abf6fc2bd280067faad35d626186c55c4a1a9c0aabe8afa87b347", + "language": "C/C++", + "lines": 72, + "truncated": false, + "block": 9, + "row": 1363 + }, + { + "path": "yggdrasil_decision_forests/dataset/formats_test.cc", + "sha256": "9e02188940f20c988a92f520253e4979de77496e208f145f881a3ffa1004269b", + "language": "C++", + "lines": 47, + "truncated": false, + "block": 9, + "row": 260 + }, + { + "path": "yggdrasil_decision_forests/dataset/synthetic_dataset.cc", + "sha256": "93df3e3affd98043f09f03c3331b699b793fd9fa8cf2b60911292507863c9fb4", + "language": "C++", + "lines": 894, + "truncated": false, + "block": 9, + "row": 1003 + }, + { + "path": "yggdrasil_decision_forests/dataset/synthetic_dataset.h", + "sha256": "3155f5bac91ea31c527c32617bf54695a8acfd421fb320ef67e493b0ab082b65", + "language": "C/C++", + "lines": 72, + "truncated": false, + "block": 9, + "row": 1364 + }, + { + "path": "yggdrasil_decision_forests/dataset/synthetic_dataset_test.cc", + "sha256": "81474d667f52b603ee5661952b09d278c2f77afa9608a4bbcaec75afeed4ec59", + "language": "C++", + "lines": 244, + "truncated": false, + "block": 9, + "row": 712 + }, + { + "path": "yggdrasil_decision_forests/dataset/tensorflow/tf_example.cc", + "sha256": "de947f8a5ce3b15d09d4ac00fe7c46ef2b8d6a97bbb2579513d034f3b93eb7b7", + "language": "C++", + "lines": 503, + "truncated": false, + "block": 9, + "row": 935 + }, + { + "path": "yggdrasil_decision_forests/dataset/tensorflow/tf_example.h", + "sha256": "fd2da8ebbdd4f9d8313123b867f5c4dff9b317969fb79e263f5324c40e837336", + "language": "C/C++", + "lines": 67, + "truncated": false, + "block": 9, + "row": 1397 + }, + { + "path": "yggdrasil_decision_forests/dataset/tensorflow/tf_example_io_interface.cc", + "sha256": "2d0ec8cb6c68a26dbd5854de7db3f31401702f0e9130204846b76ca0ef1a515a", + "language": "C++", + "lines": 539, + "truncated": false, + "block": 9, + "row": 933 + }, + { + "path": "yggdrasil_decision_forests/dataset/tensorflow/tf_example_io_interface.h", + "sha256": "c035922d1aa2d9460e64261ba3ff15ccafb0d47a453eb0f699cdafaf5b416a75", + "language": "C/C++", + "lines": 161, + "truncated": false, + "block": 9, + "row": 1627 + }, + { + "path": "yggdrasil_decision_forests/dataset/tensorflow/tf_example_io_interface_test.cc", + "sha256": "2789999b26c89436c950bbd0cd8a7caa764527e91f18eff6d455943c6531c5e3", + "language": "C++", + "lines": 162, + "truncated": false, + "block": 9, + "row": 557 + }, + { + "path": "yggdrasil_decision_forests/dataset/tensorflow/tf_example_io_tfrecord.cc", + "sha256": "17a58ad1a92c57b6da13bc8f91437bf6495db7f28db5b08840105e6b79b9f94f", + "language": "C++", + "lines": 20, + "truncated": false, + "block": 9, + "row": 177 + }, + { + "path": "yggdrasil_decision_forests/dataset/tensorflow/tf_example_io_tfrecord.h", + "sha256": "964d4ef9571c0e71649d60b18c9fca70ec47abc452b23f919ec1a4fdadf546ef", + "language": "C/C++", + "lines": 88, + "truncated": false, + "block": 9, + "row": 1450 + }, + { + "path": "yggdrasil_decision_forests/dataset/tensorflow/tf_example_test.cc", + "sha256": "68cccf5bf918b8eaeb8c940617d9cdfb5fbaab274044fa7d06d253f8efff4af7", + "language": "C++", + "lines": 327, + "truncated": false, + "block": 9, + "row": 732 + }, + { + "path": "yggdrasil_decision_forests/dataset/tensorflow_no_dep/tf_example.cc", + "sha256": "d8ad68d3a964af777663976935285f2a1869e2c7ad6a02fc4787986391de1f0d", + "language": "C++", + "lines": 58, + "truncated": false, + "block": 9, + "row": 293 + }, + { + "path": "yggdrasil_decision_forests/dataset/tensorflow_no_dep/tf_example.h", + "sha256": "a12fd4e04a73ae6ff6ff6743e60026690625bdb0d51565973686308e93751f7f", + "language": "C/C++", + "lines": 47, + "truncated": false, + "block": 9, + "row": 1282 + }, + { + "path": "yggdrasil_decision_forests/dataset/tensorflow_no_dep/tf_record.cc", + "sha256": "ec916dcccdd2d14487973dfe6014d547245bbd927af6eb77fb96812609499b64", + "language": "C++", + "lines": 212, + "truncated": false, + "block": 9, + "row": 641 + }, + { + "path": "yggdrasil_decision_forests/dataset/tensorflow_no_dep/tf_record.h", + "sha256": "80c0e731489721552e2b11dc36cdd88d70ce428dd197cae2c559f93006e634c8", + "language": "C/C++", + "lines": 195, + "truncated": false, + "block": 9, + "row": 1613 + }, + { + "path": "yggdrasil_decision_forests/dataset/tensorflow_no_dep/tf_record_test.cc", + "sha256": "5a88f8496c4a89236aa65e2dbdaa6ef430c5a130506d09e9815aa36c311e0383", + "language": "C++", + "lines": 190, + "truncated": false, + "block": 9, + "row": 580 + }, + { + "path": "yggdrasil_decision_forests/dataset/tensorflow_no_dep/tf_record_tf_example.cc", + "sha256": "21939026b21ce3eba50da436b57260ea7cafc84dbc710159ced9150e039a5a6a", + "language": "C++", + "lines": 18, + "truncated": false, + "block": 9, + "row": 174 + }, + { + "path": "yggdrasil_decision_forests/dataset/tensorflow_no_dep/tf_record_tf_example.h", + "sha256": "74dca9d31cb4caea854a1795827ba4f90488f004e28b8276c496cc5255a7da40", + "language": "C/C++", + "lines": 142, + "truncated": false, + "block": 9, + "row": 1596 + }, + { + "path": "yggdrasil_decision_forests/dataset/tensorflow_no_dep/tf_record_tf_example_test.cc", + "sha256": "f25bbd000265ef22144f6b883c1f1838d7831b7fb827c94faf9571709807cd48", + "language": "C++", + "lines": 231, + "truncated": false, + "block": 9, + "row": 654 + }, + { + "path": "yggdrasil_decision_forests/dataset/types.cc", + "sha256": "d1884b334b762aedd63a06207aa57359d4e6f831c5bf7b348a301fb47a204b8a", + "language": "C++", + "lines": 42, + "truncated": false, + "block": 9, + "row": 244 + }, + { + "path": "yggdrasil_decision_forests/dataset/types.h", + "sha256": "257e84e943767e5374b6d50f9735bcb567b324f171fcbc3005d0c05f7b7a3291", + "language": "C/C++", + "lines": 56, + "truncated": false, + "block": 9, + "row": 1265 + }, + { + "path": "yggdrasil_decision_forests/dataset/vertical_dataset.cc", + "sha256": "c1516b03d93e85dc6ccb38622ff663f0b67231118f0f9fe726aedc1d97e25216", + "language": "C++", + "lines": 1136, + "truncated": false, + "block": 9, + "row": 1028 + }, + { + "path": "yggdrasil_decision_forests/dataset/vertical_dataset.h", + "sha256": "7f55edac90469b42c4ba3e3efc9533cb2e4930df40822765543b41124f468682", + "language": "C/C++", + "lines": 1206, + "truncated": false, + "block": 9, + "row": 1848 + }, + { + "path": "yggdrasil_decision_forests/dataset/vertical_dataset_column.cc", + "sha256": "38df071cdf951292a4eda8ccfbd1519792734d05a7acbdd0a72f5c116ad83f40", + "language": "C++", + "lines": 192, + "truncated": false, + "block": 9, + "row": 618 + }, + { + "path": "yggdrasil_decision_forests/dataset/vertical_dataset_html.cc", + "sha256": "0291ecd97ed4b5f4a8a89153c0e2e6796ab1171f9d007d49906eba08101759e5", + "language": "C++", + "lines": 119, + "truncated": false, + "block": 9, + "row": 470 + }, + { + "path": "yggdrasil_decision_forests/dataset/vertical_dataset_html.h", + "sha256": "e84b106bc75fa39193a6ff39c1df5fa197ffb02a59c034f92242a41458521dc3", + "language": "C/C++", + "lines": 50, + "truncated": false, + "block": 9, + "row": 1264 + }, + { + "path": "yggdrasil_decision_forests/dataset/vertical_dataset_html_test.cc", + "sha256": "df47c93ff4355b1292869d8e92f2ffea7ee7c021c5214792cbdf49b013187858", + "language": "C++", + "lines": 116, + "truncated": false, + "block": 9, + "row": 415 + }, + { + "path": "yggdrasil_decision_forests/dataset/vertical_dataset_io.cc", + "sha256": "22935861db79bbe167bdeada9eebebe531e7a87f8cbd698dbc313b687c4dde66", + "language": "C++", + "lines": 270, + "truncated": false, + "block": 9, + "row": 749 + }, + { + "path": "yggdrasil_decision_forests/dataset/vertical_dataset_io.h", + "sha256": "81b9c9940412694f98aa27653c07878968b976fa2e4559733568f85ecc468250", + "language": "C/C++", + "lines": 87, + "truncated": false, + "block": 9, + "row": 1455 + }, + { + "path": "yggdrasil_decision_forests/dataset/vertical_dataset_io_test.cc", + "sha256": "0235af78b1c3f62648eb7b216c80ded46f5be196c467fd4c5f35baf7fefa727f", + "language": "C++", + "lines": 216, + "truncated": false, + "block": 9, + "row": 675 + }, + { + "path": "yggdrasil_decision_forests/dataset/vertical_dataset_test.cc", + "sha256": "1304fec8542cdcf91eb65810bdb71a5f3369eab3124885064567ca67e2a851cd", + "language": "C++", + "lines": 746, + "truncated": false, + "block": 9, + "row": 982 + }, + { + "path": "yggdrasil_decision_forests/dataset/weight.cc", + "sha256": "74367397ba2ae63fc892eb0dd675a4150bde1c2959f5d8b708c9ee0ce4e46e2b", + "language": "C++", + "lines": 298, + "truncated": false, + "block": 9, + "row": 804 + }, + { + "path": "yggdrasil_decision_forests/dataset/weight.h", + "sha256": "80225809b545b3367f0d3ea9d08c78fcc2ef775e08c64774b4667621231a8c5e", + "language": "C/C++", + "lines": 83, + "truncated": false, + "block": 9, + "row": 1451 + }, + { + "path": "yggdrasil_decision_forests/dataset/weight_test.cc", + "sha256": "95f5d84379f36076c3caaec1351981ddbe7485074d47dd23e0d84da07f8d34da", + "language": "C++", + "lines": 367, + "truncated": false, + "block": 9, + "row": 827 + }, + { + "path": "yggdrasil_decision_forests/learner/abstract_learner.cc", + "sha256": "fb4719bcaa99232a0dd75f82774889d7adf052147d3b8ea3e42e6f97973ede6a", + "language": "C++", + "lines": 1353, + "truncated": false, + "block": 9, + "row": 1062 + }, + { + "path": "yggdrasil_decision_forests/learner/abstract_learner.h", + "sha256": "832db6ec08cea990c671c1493d111933a1798e5d14cdb04ded0c7d98aca26c5b", + "language": "C/C++", + "lines": 357, + "truncated": false, + "block": 9, + "row": 1769 + }, + { + "path": "yggdrasil_decision_forests/learner/abstract_learner_test.cc", + "sha256": "8de4fbb97bc79ec0b244d3bd8043427e2e07dfee59d3fcd543c6a9a7083e4bfc", + "language": "C++", + "lines": 438, + "truncated": false, + "block": 9, + "row": 886 + }, + { + "path": "yggdrasil_decision_forests/learner/cart/cart.cc", + "sha256": "8e0f8b89c93b97b2826a8116707b50bfb9c8d721d6fd8905abb104ee7663014d", + "language": "C++", + "lines": 636, + "truncated": false, + "block": 9, + "row": 969 + }, + { + "path": "yggdrasil_decision_forests/learner/cart/cart.h", + "sha256": "900b53b78384487c011bd7e2deca0494e9e1b3857bc8302bf57173335636df48", + "language": "C/C++", + "lines": 103, + "truncated": false, + "block": 9, + "row": 1482 + }, + { + "path": "yggdrasil_decision_forests/learner/cart/cart_test.cc", + "sha256": "f6a0d099cba2a0578a6070ae87a20ba0f17b296090263ecf3f0e6842d4189e5f", + "language": "C++", + "lines": 355, + "truncated": false, + "block": 9, + "row": 814 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/decision_tree_test.cc", + "sha256": "9dd44011b3022522209ed65244445680ff16e9bb7831e752c765a4b143189919", + "language": "C++", + "lines": 3338, + "truncated": false, + "block": 9, + "row": 1102 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/generic_parameters.cc", + "sha256": "1c81b25bbd1cb02a6abc148f596042dc36a792eddb5d6650edae2e438fa56d0c", + "language": "C++", + "lines": 1371, + "truncated": false, + "block": 9, + "row": 1072 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/generic_parameters.h", + "sha256": "f4006f4c2137b711eda16364709a1da6aa3850740b21f1d658494b064ba3b13d", + "language": "C/C++", + "lines": 186, + "truncated": false, + "block": 9, + "row": 1685 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/generic_parameters_test.cc", + "sha256": "26ff9eba20e71bf8001599f65144eae37cabca8259ad8aac5336ab46da4160ef", + "language": "C++", + "lines": 393, + "truncated": false, + "block": 9, + "row": 900 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/gpu.cc", + "sha256": "cdb437e9b5ba88e7ef2de4f8bd12c294ca70311fc17598048a69553cf01a572e", + "language": "C++", + "lines": 283, + "truncated": false, + "block": 9, + "row": 751 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/gpu.cu.cc", + "sha256": "5742afd8f82220737cd41ce7c40edf2aacc5049e28ce4799a9ec7eafeb6bbb44", + "language": "C++", + "lines": 361, + "truncated": false, + "block": 9, + "row": 826 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/gpu.h", + "sha256": "3f7e136cdaae539f4331dd96caa6f486d295d7751b460b9df6fc0c05cde3aac5", + "language": "C/C++", + "lines": 179, + "truncated": false, + "block": 9, + "row": 1639 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/gpu_test.cc", + "sha256": "e3d0eea6826e7e1d236fee30d807eeebfca2d98c62da43eb19409b3b450afacb", + "language": "C++", + "lines": 291, + "truncated": false, + "block": 9, + "row": 780 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/label.cc", + "sha256": "b9bfd5f278a823a83e6f09a67bcdf73e6688e82bc5b2eed3ccdb5f9921f7299e", + "language": "C++", + "lines": 232, + "truncated": false, + "block": 9, + "row": 716 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/label.h", + "sha256": "bf6c834cf510ac3370c01b18da8544e1fe8858521733e458ea558fff17752b98", + "language": "C/C++", + "lines": 148, + "truncated": false, + "block": 9, + "row": 1604 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/oblique.cc", + "sha256": "31b0e9cbd43db7ad2decaf851365021b89714ef324b7ba9c593a48e519703601", + "language": "C++", + "lines": 1492, + "truncated": false, + "block": 9, + "row": 1065 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/oblique.h", + "sha256": "8cdbbd28d50a2e93e66b5f891e64b3b69e32cbaded437d94610f9a3ab45077ea", + "language": "C/C++", + "lines": 310, + "truncated": false, + "block": 9, + "row": 1750 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/preprocessing.cc", + "sha256": "670c9bf54dce148f3714934a2141d66b15071bdbc2b5d46679b5a2b8dbf9e7fb", + "language": "C++", + "lines": 147, + "truncated": false, + "block": 9, + "row": 570 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/preprocessing.h", + "sha256": "ed81a2558af4da64dfe30e91ab8cbd72a0d6e64c37d7e23eefee98f5d9d3712b", + "language": "C/C++", + "lines": 112, + "truncated": false, + "block": 9, + "row": 1511 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/preprocessing_test.cc", + "sha256": "a1a2fdc6aebf6bb6bf26e1aac74c72f9d1057f012e3fce48932c76017367cc89", + "language": "C++", + "lines": 68, + "truncated": false, + "block": 9, + "row": 361 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/splitter_accumulator.h", + "sha256": "469ff41e3555ee9236b327a6ad8998ea8268f24b1f1f39e4eaeb040256573871", + "language": "C/C++", + "lines": 2149, + "truncated": false, + "block": 9, + "row": 1863 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/splitter_scanner.h", + "sha256": "ff8509361e531dab540b182885233f50cd93391665003ee53bceb4b76aa1fe3d", + "language": "C/C++", + "lines": 2105, + "truncated": false, + "block": 9, + "row": 1866 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/training.cc", + "sha256": "b86cff72a7c5f25b1a06dc30c8c722e0d8a3b16f78f425b9882c5334b5adb677", + "language": "C++", + "lines": 4499, + "truncated": true, + "block": 9, + "row": 1108 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/training.h", + "sha256": "8d3e125fe44112456b14dbd4f7d8e17ded7c5363bc03c78b65aebe75ac7ee6dc", + "language": "C/C++", + "lines": 1075, + "truncated": false, + "block": 9, + "row": 1852 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/training_test.cc", + "sha256": "a326788d0f2b557adf2640078b0b6c54fc9e65fe967aafddd340a5fb479f2baf", + "language": "C++", + "lines": 974, + "truncated": false, + "block": 9, + "row": 1027 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/uplift.h", + "sha256": "4855ce47714ca286f2f4db8dffb2f3c7990c54cf5392d9d0455aafdcf08a1d2a", + "language": "C/C++", + "lines": 708, + "truncated": false, + "block": 9, + "row": 1812 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/utils.cc", + "sha256": "a402fc3cc7c72ab16465390d8b6149432749d2818be20483c6fc7d472c10018e", + "language": "C++", + "lines": 87, + "truncated": false, + "block": 9, + "row": 440 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/utils.h", + "sha256": "6f546aa9de9e620457f58ee0e109faaa5652375982850cf6c0a0cc08243fe144", + "language": "C/C++", + "lines": 128, + "truncated": false, + "block": 9, + "row": 1523 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/vector_sequence.cc", + "sha256": "0ed17b693642f3f827ee16e813319ad4668c6507baccae4c83497d64c0b9281e", + "language": "C++", + "lines": 433, + "truncated": false, + "block": 9, + "row": 919 + }, + { + "path": "yggdrasil_decision_forests/learner/decision_tree/vector_sequence.h", + "sha256": "b628d85d77ed29160289ec16024de4aa649cfb0b70a4f1c3bb02eafe15012dc1", + "language": "C/C++", + "lines": 68, + "truncated": false, + "block": 9, + "row": 1413 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/dataset_cache/column_cache.cc", + "sha256": "3fa955401e50fafa24a5fad7fba22efa42b0c6d1921490fa669e38ba4cc9d771", + "language": "C++", + "lines": 638, + "truncated": false, + "block": 9, + "row": 944 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/dataset_cache/column_cache.h", + "sha256": "568b038f418040aff51b53e4f4e97c2031ad893f03f9510d175de418677a5390", + "language": "C/C++", + "lines": 424, + "truncated": false, + "block": 9, + "row": 1759 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/dataset_cache/column_cache_test.cc", + "sha256": "3969c226455d10b12052c0634cc881b3c3bf000751658e1806ff199d9f308a86", + "language": "C++", + "lines": 301, + "truncated": false, + "block": 9, + "row": 767 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/dataset_cache/dataset_cache.cc", + "sha256": "056f228d96c199cad56b87d40a3fab6465ac0b56aea7be6db0be905282875807", + "language": "C++", + "lines": 749, + "truncated": false, + "block": 9, + "row": 990 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/dataset_cache/dataset_cache.h", + "sha256": "b9a92e907ecf7370885ce098735ae5bc4271fe5a8013c7ca4dc46ece24c7caee", + "language": "C/C++", + "lines": 171, + "truncated": false, + "block": 9, + "row": 1676 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/dataset_cache/dataset_cache_common.cc", + "sha256": "3a3544ac51dc628da2ddfddf264924c7abb687970c976153646addfa6d805b78", + "language": "C++", + "lines": 247, + "truncated": false, + "block": 9, + "row": 718 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/dataset_cache/dataset_cache_common.h", + "sha256": "54a9a6215b64577f77762e820f807ef8823067e669d210bfaa498ac36f6d0eb4", + "language": "C/C++", + "lines": 196, + "truncated": false, + "block": 9, + "row": 1678 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/dataset_cache/dataset_cache_common_test.cc", + "sha256": "88d9dcce4a60ac69761e7d9798cbd155282f71ef7b197c017f10422fa5fe56cb", + "language": "C++", + "lines": 76, + "truncated": false, + "block": 9, + "row": 355 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/dataset_cache/dataset_cache_reader.cc", + "sha256": "2a228fe2596cba0a5e28741a7dec8a09f6dad5e54f98ca0a99d1c55c87c3f27f", + "language": "C++", + "lines": 1109, + "truncated": false, + "block": 9, + "row": 1040 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/dataset_cache/dataset_cache_reader.h", + "sha256": "5e07c7f24279d3e4b5f2d09bd71d69bf7ad68a5f719d85d508d26a87c80ead9e", + "language": "C/C++", + "lines": 353, + "truncated": false, + "block": 9, + "row": 1754 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/dataset_cache/dataset_cache_reader_test.cc", + "sha256": "00567ab99e838933bbbdb3db9f0237e4a4c123a119ef3bc0ba949e7b24eb9269", + "language": "C++", + "lines": 219, + "truncated": false, + "block": 9, + "row": 670 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/dataset_cache/dataset_cache_test.cc", + "sha256": "5d8d64d21652855f389919733b7c47104a1039ea97a73ccb3641281b5313afa3", + "language": "C++", + "lines": 682, + "truncated": false, + "block": 9, + "row": 950 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/dataset_cache/dataset_cache_worker.cc", + "sha256": "e522bc9c51592f5bafc4338c7bfde9b51ef59c463f7c0139fe04fe8c2578b3df", + "language": "C++", + "lines": 920, + "truncated": false, + "block": 9, + "row": 1013 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/dataset_cache/dataset_cache_worker.h", + "sha256": "2170d58d929e906650254e06286aeea9b439acd09d92b21518f62408540091fc", + "language": "C/C++", + "lines": 100, + "truncated": false, + "block": 9, + "row": 1500 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/label_accessor.h", + "sha256": "2e7937479d31a7296f49c38ec741b9470bbc688d94122be8bdfd9ebbd993e311", + "language": "C/C++", + "lines": 364, + "truncated": false, + "block": 9, + "row": 1747 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/load_balancer/load_balancer.cc", + "sha256": "72061c91f2bcce8136a8ea69dc1bdc9c2fffedaab12bac159231412fa14e128e", + "language": "C++", + "lines": 635, + "truncated": false, + "block": 9, + "row": 947 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/load_balancer/load_balancer.h", + "sha256": "18686a027c5dca818ccd8f0522f9164070f93bf7c2c8d1c5ece08d282ea65c40", + "language": "C/C++", + "lines": 296, + "truncated": false, + "block": 9, + "row": 1718 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/load_balancer/load_balancer_test.cc", + "sha256": "939255b1ed5daef1f8b4e225d815ab903c9bbb06bf93b36c1bd9566fb738b6f6", + "language": "C++", + "lines": 351, + "truncated": false, + "block": 9, + "row": 764 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/splitter.h", + "sha256": "af35725a08d0f43b0c8da445355dac2045b2ebefabce25dd98bd90d3df9edde4", + "language": "C/C++", + "lines": 1359, + "truncated": false, + "block": 9, + "row": 1854 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/training.cc", + "sha256": "564400b8711afb2c0c34d07986538a297abc0ceb254ba303af4382545655f2f7", + "language": "C++", + "lines": 1421, + "truncated": false, + "block": 9, + "row": 1061 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/training.h", + "sha256": "c9db0e68a8f5b6be6749c656a2a4a43f4e71f2037d85e19162cde8d3904bc4aa", + "language": "C/C++", + "lines": 391, + "truncated": false, + "block": 9, + "row": 1775 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_decision_tree/training_test.cc", + "sha256": "566e2d975e19f46dca64410af7e162093dabcc850014eb1e757b0db753fc3f8c", + "language": "C++", + "lines": 604, + "truncated": false, + "block": 9, + "row": 956 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_gradient_boosted_trees/common.cc", + "sha256": "ae2c106fbbe10e441753681c0d6f5e57432978ed1338d386f2424c9bae654435", + "language": "C++", + "lines": 66, + "truncated": false, + "block": 9, + "row": 331 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_gradient_boosted_trees/common.h", + "sha256": "52793a74a7899560733c3f8bf74bb1541be16df1219e25b11b9f5887169ff64a", + "language": "C/C++", + "lines": 74, + "truncated": false, + "block": 9, + "row": 1395 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_gradient_boosted_trees/distributed_gradient_boosted_trees.cc", + "sha256": "5ace6146b9e306bb7b08067042e07166c01d8ce0d945372de8c6c350cd5060f3", + "language": "C++", + "lines": 2131, + "truncated": false, + "block": 9, + "row": 1096 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_gradient_boosted_trees/distributed_gradient_boosted_trees.h", + "sha256": "45a08052447361bf062104729760340c4f1c6891079f3cfaf79ff0846bef0915", + "language": "C/C++", + "lines": 495, + "truncated": false, + "block": 9, + "row": 1796 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_gradient_boosted_trees/distributed_gradient_boosted_trees_test.cc", + "sha256": "f8ed697f920c73243c1897a676ef49f390a7be605deb818bcfed2f3231cd60f7", + "language": "C++", + "lines": 716, + "truncated": false, + "block": 9, + "row": 978 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_gradient_boosted_trees/worker.cc", + "sha256": "e169e689a927301b48949aa53b9fed8b291aed389d4766a8424085974ecd97a8", + "language": "C++", + "lines": 1438, + "truncated": false, + "block": 9, + "row": 1063 + }, + { + "path": "yggdrasil_decision_forests/learner/distributed_gradient_boosted_trees/worker.h", + "sha256": "9cb1684022e141f22ccbc1b8279bb9690ea7a2b97f840a68cd91d57dcd28390a", + "language": "C/C++", + "lines": 364, + "truncated": false, + "block": 9, + "row": 1761 + }, + { + "path": "yggdrasil_decision_forests/learner/export_doc.cc", + "sha256": "d3fd992a695e54c64f2f51891b62bd84ffe5f15528f06cde246eaa3f62f02037", + "language": "C++", + "lines": 312, + "truncated": false, + "block": 9, + "row": 794 + }, + { + "path": "yggdrasil_decision_forests/learner/export_doc.h", + "sha256": "46c621a484a491279a6ade93ccf28fd1c84c571f129fcc5e7f8354831638b00d", + "language": "C/C++", + "lines": 57, + "truncated": false, + "block": 9, + "row": 1319 + }, + { + "path": "yggdrasil_decision_forests/learner/export_doc_main.cc", + "sha256": "b04066607943df5e097c54242f1525dab7e27de959f912fa7ee24f4c0a023e1e", + "language": "C++", + "lines": 61, + "truncated": false, + "block": 9, + "row": 310 + }, + { + "path": "yggdrasil_decision_forests/learner/export_doc_test.cc", + "sha256": "7338175e2967004d3b86d0d0d189f158ac60a0c1ee725f34797d6b7f9345d3c2", + "language": "C++", + "lines": 109, + "truncated": false, + "block": 9, + "row": 452 + }, + { + "path": "yggdrasil_decision_forests/learner/generic_worker/generic_worker.cc", + "sha256": "60a49e03e591871ed5deca89a8bcba93a722ea99548ff4b7dd9e229728a6b4a0", + "language": "C++", + "lines": 155, + "truncated": false, + "block": 9, + "row": 578 + }, + { + "path": "yggdrasil_decision_forests/learner/generic_worker/generic_worker.h", + "sha256": "0549fcff3466dfebec44bbe980fc4a43203edbb496dfaf636f16cc9f7e2e55db", + "language": "C/C++", + "lines": 70, + "truncated": false, + "block": 9, + "row": 1351 + }, + { + "path": "yggdrasil_decision_forests/learner/generic_worker/generic_worker_test.cc", + "sha256": "6e92b4641511cf1546c859a44803f5b58ed076b5cd0bf3df990a7a133a62e889", + "language": "C++", + "lines": 108, + "truncated": false, + "block": 9, + "row": 471 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/early_stopping/early_stopping.cc", + "sha256": "ae46edb631b86bbf2c0edd2030b54f46c4a115ecb2ac654e9dc50e8a1cf80194", + "language": "C++", + "lines": 93, + "truncated": false, + "block": 9, + "row": 410 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/early_stopping/early_stopping.h", + "sha256": "d01f8e501800669711282291f1c8621c0c7b9d1526d564c51f96434b4e1781c9", + "language": "C/C++", + "lines": 104, + "truncated": false, + "block": 9, + "row": 1472 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/early_stopping/early_stopping_test.cc", + "sha256": "b908b1a828d9fc5f74cd7d3ed4acc3c8f69ea6473450f5bf708be9126944721f", + "language": "C++", + "lines": 126, + "truncated": false, + "block": 9, + "row": 466 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/gradient_boosted_trees.cc", + "sha256": "7e331ad578b5748200a0c440302f14fde95a545be8356dd54d1d6c642be1afcd", + "language": "C++", + "lines": 3558, + "truncated": false, + "block": 9, + "row": 1103 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/gradient_boosted_trees.h", + "sha256": "e52d4db5341e8663ef6934c0027b6a3384fe2ecb2c0fc5004c516852cfe6284b", + "language": "C/C++", + "lines": 487, + "truncated": false, + "block": 9, + "row": 1798 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/gradient_boosted_trees_hparams_templates.cc", + "sha256": "be2dfe51d0651f36f43dc8d3665091c4649eb668e18b1b7326e39635dd0e0436", + "language": "C++", + "lines": 89, + "truncated": false, + "block": 9, + "row": 413 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/gradient_boosted_trees_test.cc", + "sha256": "b6718dfa127292c27fc950ac50318afb7a2ec3fbbe154f99276f4885f2b23a1b", + "language": "C++", + "lines": 3327, + "truncated": false, + "block": 9, + "row": 1101 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/gradient_boosted_trees_tuner_test.cc", + "sha256": "4fe27753dde7630799750a9cfb408dd0aa2abb1b31cba220774ef79443a459a9", + "language": "C++", + "lines": 92, + "truncated": false, + "block": 9, + "row": 394 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_binary_focal.cc", + "sha256": "32674674ceb99ea52caec807796e058efc3d6b633a67664d5f6641026475f9c1", + "language": "C++", + "lines": 348, + "truncated": false, + "block": 9, + "row": 857 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_binary_focal.h", + "sha256": "1eeb3c8d25a41d4e4a365c1a61d39cfddb89aebd955e4f4d7c6c60f443d4dcee", + "language": "C/C++", + "lines": 155, + "truncated": false, + "block": 9, + "row": 1629 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_binary_focal_test.cc", + "sha256": "856d49800f222816abfe92e404e39fae1a14bb7909eb1f95358454448720efd9", + "language": "C++", + "lines": 245, + "truncated": false, + "block": 9, + "row": 766 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_binomial.cc", + "sha256": "a03606cbec1df58d998a22a3e797a6547daebda3c7b92c21759556c2b6c00e81", + "language": "C++", + "lines": 329, + "truncated": false, + "block": 9, + "row": 836 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_binomial.h", + "sha256": "a25a507fd6597baee8b4acb25d8e2ecdd0547e8e6a10fbf69fcb0242617cff71", + "language": "C/C++", + "lines": 139, + "truncated": false, + "block": 9, + "row": 1607 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_binomial_test.cc", + "sha256": "34b3b6a42d6a559dda52e0e3f14e9bd104cc6d6756bd479795eb995b9494efe0", + "language": "C++", + "lines": 234, + "truncated": false, + "block": 9, + "row": 725 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_cox.cc", + "sha256": "e51a37d75fcc60f633d23fad5eba0b3997801002b8553cdb21043c0729493985", + "language": "C++", + "lines": 287, + "truncated": false, + "block": 9, + "row": 795 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_cox.h", + "sha256": "74e890b9076b5d87850f3dc110a262c12544b8b8ca7a8d1617697b4a6c28f381", + "language": "C/C++", + "lines": 141, + "truncated": false, + "block": 9, + "row": 1578 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_cox_test.cc", + "sha256": "b5aaf3d7c7cfdec8236d1eedb51ec3f3ff665e3e94aae4111140571f1753b5c9", + "language": "C++", + "lines": 342, + "truncated": false, + "block": 9, + "row": 868 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_cross_entropy_ndcg.cc", + "sha256": "39dd019d82dbeaab2e3b4d1b9d8b3baa17fa578f0e1091c3fc5f27bb3ede46a2", + "language": "C++", + "lines": 219, + "truncated": false, + "block": 9, + "row": 695 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_cross_entropy_ndcg.h", + "sha256": "b5d203851c53fc98a90821d63ca600507ae6234e12bbdf2e1e434bcb07f1dc4d", + "language": "C/C++", + "lines": 105, + "truncated": false, + "block": 9, + "row": 1501 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_custom_binary_classification.cc", + "sha256": "cdf364f4a0d607e48b6ab8b6bcf8438ed0c0ec8a2cb104944399edcdd445f767", + "language": "C++", + "lines": 122, + "truncated": false, + "block": 9, + "row": 532 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_custom_binary_classification.h", + "sha256": "1011716cc45fc5e7ffcfbe41bc6aad7e68b6487fd69edb386fc3aae86e3511b5", + "language": "C/C++", + "lines": 118, + "truncated": false, + "block": 9, + "row": 1557 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_custom_binary_classification_test.cc", + "sha256": "ae4ab734667a4c04d0914b96da802821ff5ddb6124bac24bcfe16f2ecfbaeefe", + "language": "C++", + "lines": 257, + "truncated": false, + "block": 9, + "row": 776 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_custom_multi_classification.cc", + "sha256": "ebb194e630e28c02efb7feaa1baea08e5041860057b150829eced40f47a20ae1", + "language": "C++", + "lines": 136, + "truncated": false, + "block": 9, + "row": 575 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_custom_multi_classification.h", + "sha256": "583a684170615d2cda41a5671512decc3044f7da4bc385e8ea18f7171ad65039", + "language": "C/C++", + "lines": 120, + "truncated": false, + "block": 9, + "row": 1576 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_custom_multi_classification_test.cc", + "sha256": "6d3e11fe2ea6ce739ea996562ce5da9310201c00babcec0a9b5af4e1f061f50e", + "language": "C++", + "lines": 279, + "truncated": false, + "block": 9, + "row": 797 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_custom_regression.cc", + "sha256": "37ec1e308fbccb718c0fa2a155d0125b4779ebb7b4992ecaa96b0f7af0399942", + "language": "C++", + "lines": 119, + "truncated": false, + "block": 9, + "row": 522 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_custom_regression.h", + "sha256": "603f8d9e638eb317063be4edd0a3b3b0d200cbf67bc86e811ca6ae846bdeb114", + "language": "C/C++", + "lines": 117, + "truncated": false, + "block": 9, + "row": 1542 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_custom_regression_test.cc", + "sha256": "35fd5d00ce8b1d971082d13346c1c4da3a3a4d41406ac43c609108d09a760450", + "language": "C++", + "lines": 233, + "truncated": false, + "block": 9, + "row": 737 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_mean_average_error.cc", + "sha256": "1a11ddf70a518bf00e6373409b62a1919a466a79d2e170c5de0cdbc79dd0a775", + "language": "C++", + "lines": 186, + "truncated": false, + "block": 9, + "row": 642 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_mean_average_error.h", + "sha256": "2192fe971f90e2c5c46ceb3c80e7e431aa083ac4b0ef12d7980d9164a8ea9e3e", + "language": "C/C++", + "lines": 92, + "truncated": false, + "block": 9, + "row": 1477 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_mean_average_error_test.cc", + "sha256": "e4720b5bcb1d7ab1d21aa3a0436206dcd2eb42a2022fb7702ff2ceb767ed4673", + "language": "C++", + "lines": 234, + "truncated": false, + "block": 9, + "row": 723 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_mean_square_error.cc", + "sha256": "dbc10f637cc19d39fa05c337022b408dc97a8938ecb301f78ee373ddf1824c3e", + "language": "C++", + "lines": 218, + "truncated": false, + "block": 9, + "row": 704 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_mean_square_error.h", + "sha256": "8b4221caa5f60d7069c1f585ed6b2916d29a80b3a70f195d5f6a3076a12c1cd2", + "language": "C/C++", + "lines": 112, + "truncated": false, + "block": 9, + "row": 1489 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_mean_square_error_test.cc", + "sha256": "638a90c9e74117983ed2134cd4b7598ee8f862ecab78a050381b574f9b05e3b1", + "language": "C++", + "lines": 264, + "truncated": false, + "block": 9, + "row": 778 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_multinomial.cc", + "sha256": "b92bdac253258730ab6af96934e39979eb0bc03f3197bf6e185c05f9fbe91f2a", + "language": "C++", + "lines": 369, + "truncated": false, + "block": 9, + "row": 862 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_multinomial.h", + "sha256": "9bc7cfca85ed35865677e5e2e9abe267137bcc552358eb1c26975924c552a511", + "language": "C/C++", + "lines": 140, + "truncated": false, + "block": 9, + "row": 1601 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_multinomial_test.cc", + "sha256": "4a30be4e45942df62078a6b3d0bd41cf58bd195e720676ed42ebe216f8121ad6", + "language": "C++", + "lines": 234, + "truncated": false, + "block": 9, + "row": 724 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_ndcg.cc", + "sha256": "cd122a6b0b3ee6d1571df1ea36556157fad568b742ae2a7289433546e424c8ae", + "language": "C++", + "lines": 439, + "truncated": false, + "block": 9, + "row": 917 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_ndcg.h", + "sha256": "f388f87254b9ca668b2a23c43b8b2daf560bf7e182b040bceaac5f97ae4f8fe4", + "language": "C/C++", + "lines": 119, + "truncated": false, + "block": 9, + "row": 1534 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_ndcg_test.cc", + "sha256": "249d87ae25e20e44b835048095a5f8cb1ce07fb9668078e5e242a4f80aaa8d5f", + "language": "C++", + "lines": 432, + "truncated": false, + "block": 9, + "row": 911 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_poisson.cc", + "sha256": "247cd55b8020c310803a0a04855747eb8060c3fc199cacaea03294d4669bdb7d", + "language": "C++", + "lines": 245, + "truncated": false, + "block": 9, + "row": 754 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_poisson.h", + "sha256": "9e880793be7eed77c040e96a9e2db28d53acf2a0552cd5582d346c5228c3abd4", + "language": "C/C++", + "lines": 101, + "truncated": false, + "block": 9, + "row": 1513 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_imp_poisson_test.cc", + "sha256": "a494afcd02bec88bf4184d2213130319b62693a3ccb803776a9eff7935fc55d8", + "language": "C++", + "lines": 348, + "truncated": false, + "block": 9, + "row": 843 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_interface.cc", + "sha256": "e939b5523e37a9edac24d6217d5b41bb5ec38d6be8ff6c2fc7ae8a24633d7ed6", + "language": "C++", + "lines": 312, + "truncated": false, + "block": 9, + "row": 808 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_interface.h", + "sha256": "4a792a82035e5bcc24490f5f48108edac45ebd17a65c7e3286e2012f3de2c8d0", + "language": "C/C++", + "lines": 386, + "truncated": false, + "block": 9, + "row": 1765 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_library.cc", + "sha256": "9d0c12eff8b33657686085620f5a3a06c1ab330e9ae30ad9a0ff983f806756f1", + "language": "C++", + "lines": 89, + "truncated": false, + "block": 9, + "row": 430 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_library.h", + "sha256": "01c8f0093a61133d1a2f96191b45d7a8957ef564826fef548e6e025d8fc65b93", + "language": "C/C++", + "lines": 53, + "truncated": false, + "block": 9, + "row": 1339 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_library_test.cc", + "sha256": "85e79ad973549e38651691337d98518f5da1eb9205dc767024e7dc07fab91f65", + "language": "C++", + "lines": 232, + "truncated": false, + "block": 9, + "row": 742 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_utils.cc", + "sha256": "a16105ec9b930b965604b3e90b91ab00615733f9cb42b94834d52d03123d25a5", + "language": "C++", + "lines": 272, + "truncated": false, + "block": 9, + "row": 761 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_utils.h", + "sha256": "d6a875ecb3ae5983425dff075745e5d9c1859d1bba9b9341ac2bc192b7425e9f", + "language": "C/C++", + "lines": 98, + "truncated": false, + "block": 9, + "row": 1521 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/loss/loss_utils_test.cc", + "sha256": "4c8ddb549c672600ea3389ca41367c81b247e9fa90983b488d17ce5b1bb9ee72", + "language": "C++", + "lines": 84, + "truncated": false, + "block": 9, + "row": 397 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/plot_training.cc", + "sha256": "5f3f191abb2a4cfc2a7667356b55037f2c024b05744a23160edd444b8c7ebb12", + "language": "C++", + "lines": 186, + "truncated": false, + "block": 9, + "row": 656 + }, + { + "path": "yggdrasil_decision_forests/learner/gradient_boosted_trees/plot_training.h", + "sha256": "3a5e5a9ea47cceea12a4248be4adc986d5e799e42f5e0505599641d9242ffeca", + "language": "C/C++", + "lines": 38, + "truncated": false, + "block": 9, + "row": 1212 + }, + { + "path": "yggdrasil_decision_forests/learner/hyperparameters_optimizer/hyperparameters_optimizer.cc", + "sha256": "2c372709bcd48f86eab7d8679c20ef802f874305ec75b6f4099a4b07bb06c597", + "language": "C++", + "lines": 923, + "truncated": false, + "block": 9, + "row": 1021 + }, + { + "path": "yggdrasil_decision_forests/learner/hyperparameters_optimizer/hyperparameters_optimizer.h", + "sha256": "9fe807096589071366268d4e19c6191f74afeeb534b3168d45f040b93c078a2c", + "language": "C/C++", + "lines": 209, + "truncated": false, + "block": 9, + "row": 1695 + }, + { + "path": "yggdrasil_decision_forests/learner/hyperparameters_optimizer/hyperparameters_optimizer_test.cc", + "sha256": "c50b78263ef48049f4e6b2052c857864d23dd9ae65ea4ff644f8457108e82112", + "language": "C++", + "lines": 432, + "truncated": false, + "block": 9, + "row": 880 + }, + { + "path": "yggdrasil_decision_forests/learner/hyperparameters_optimizer/optimizer_interface.h", + "sha256": "a949b745101120866b8ca3e57bf1bfbd3d05343449156bb6dbf85f6ccaba1947", + "language": "C/C++", + "lines": 124, + "truncated": false, + "block": 9, + "row": 1563 + }, + { + "path": "yggdrasil_decision_forests/learner/hyperparameters_optimizer/optimizers/random.cc", + "sha256": "1449666cf5415bab9bac8d28a985c1902f2209ddf12a6964d66601e052e6954b", + "language": "C++", + "lines": 264, + "truncated": false, + "block": 9, + "row": 711 + }, + { + "path": "yggdrasil_decision_forests/learner/hyperparameters_optimizer/optimizers/random.h", + "sha256": "7da87e49a8fdd659b1b4daa2b1cf20a9f3c3199fcb6ac4f8f19390dddedde9b6", + "language": "C/C++", + "lines": 121, + "truncated": false, + "block": 9, + "row": 1514 + }, + { + "path": "yggdrasil_decision_forests/learner/hyperparameters_optimizer/optimizers/random_test.cc", + "sha256": "a4d6f4bdde9c12fe3263f27736842321a1508bb81e861bb2db5ac414849fa1f9", + "language": "C++", + "lines": 260, + "truncated": false, + "block": 9, + "row": 661 + }, + { + "path": "yggdrasil_decision_forests/learner/isolation_forest/isolation_forest.cc", + "sha256": "582057f8ca31d8ccd4fe5a64e27b7b25b88401cef3a9d0340ad0ebf32e1d802a", + "language": "C++", + "lines": 971, + "truncated": false, + "block": 9, + "row": 1033 + }, + { + "path": "yggdrasil_decision_forests/learner/isolation_forest/isolation_forest.h", + "sha256": "e2e2a8f37a2dc0fcad30d47e12c428bfa1d63b42f757990a7da250adaaa1fcb5", + "language": "C/C++", + "lines": 155, + "truncated": false, + "block": 9, + "row": 1632 + }, + { + "path": "yggdrasil_decision_forests/learner/isolation_forest/isolation_forest_test.cc", + "sha256": "32a1667f955d8c34861bf6f667c67503cb1168895810f3601c099d8359a4d795", + "language": "C++", + "lines": 566, + "truncated": false, + "block": 9, + "row": 945 + }, + { + "path": "yggdrasil_decision_forests/learner/learner_library.cc", + "sha256": "97d177a0d576d7803058178ec6cbba5182f9b7942d45ec71f6e438a448c0e99b", + "language": "C++", + "lines": 66, + "truncated": false, + "block": 9, + "row": 316 + }, + { + "path": "yggdrasil_decision_forests/learner/learner_library.h", + "sha256": "be87f20d9248807b2e50d1c2e48465c23be13b7d7232713c1b37e7a4589f306b", + "language": "C/C++", + "lines": 49, + "truncated": false, + "block": 9, + "row": 1260 + }, + { + "path": "yggdrasil_decision_forests/learner/learner_library_test.cc", + "sha256": "affbf12940aa45b77fdb87cded84f8e2bac9b9e2b326b2cbf2eec5e7a9fd3fa6", + "language": "C++", + "lines": 51, + "truncated": false, + "block": 9, + "row": 246 + }, + { + "path": "yggdrasil_decision_forests/learner/multitasker/multitasker.cc", + "sha256": "5c9b1d1ff1af21b9be1a2fd5371f150a97c7d402d26a02d534425a4a9aa9d0d2", + "language": "C++", + "lines": 399, + "truncated": false, + "block": 9, + "row": 877 + }, + { + "path": "yggdrasil_decision_forests/learner/multitasker/multitasker.h", + "sha256": "d9c928a42bfa2cf3c943f8d1c099b55fd05bc24733d84c3a467783f325deed6b", + "language": "C/C++", + "lines": 80, + "truncated": false, + "block": 9, + "row": 1396 + }, + { + "path": "yggdrasil_decision_forests/learner/multitasker/multitasker_test.cc", + "sha256": "22b030811bd122fdf65f7a67df90e91418170bd842e4f94569236335664a00da", + "language": "C++", + "lines": 334, + "truncated": false, + "block": 9, + "row": 811 + }, + { + "path": "yggdrasil_decision_forests/learner/postprocessor/postprocessor_library.cc", + "sha256": "93b532761c80263328ed8f7be077d50693223a7637d6f87ecb0c2250bcdc1469", + "language": "C++", + "lines": 55, + "truncated": false, + "block": 9, + "row": 332 + }, + { + "path": "yggdrasil_decision_forests/learner/postprocessor/postprocessor_library.h", + "sha256": "22fb4b7b51a8f5e3764c63e540d64635ea9550129359a11eb1cc23026afce57b", + "language": "C/C++", + "lines": 41, + "truncated": false, + "block": 9, + "row": 1257 + }, + { + "path": "yggdrasil_decision_forests/learner/postprocessor/postprocessor_library_test.cc", + "sha256": "3de72a3ad93ffc58b7defa2a330b73c9c66d4c45e33e7fca6c0a1de1d67fd1ff", + "language": "C++", + "lines": 133, + "truncated": false, + "block": 9, + "row": 533 + }, + { + "path": "yggdrasil_decision_forests/learner/postprocessor/smoothed_pav_calibrator/smoothed_pav_calibrator.cc", + "sha256": "0421009cdde7fd22b1acfc8b84f6b0c1e3af6324c62987a37effb59002be666f", + "language": "C++", + "lines": 130, + "truncated": false, + "block": 9, + "row": 564 + }, + { + "path": "yggdrasil_decision_forests/learner/postprocessor/smoothed_pav_calibrator/smoothed_pav_calibrator.h", + "sha256": "bd045fabd5f98a19f76f0bec850fa61776196392134dbe759c1df15724c0d112", + "language": "C/C++", + "lines": 44, + "truncated": false, + "block": 9, + "row": 1301 + }, + { + "path": "yggdrasil_decision_forests/learner/postprocessor/smoothed_pav_calibrator/smoothed_pav_calibrator_test.cc", + "sha256": "1528a18e8e253d98789827a16c5d27bd26b6691f93bbbd16f1849a2c741425e7", + "language": "C++", + "lines": 245, + "truncated": false, + "block": 9, + "row": 703 + }, + { + "path": "yggdrasil_decision_forests/learner/random_forest/random_forest.cc", + "sha256": "491c3270a49bff28c0a3d0e33fb44199a36d23b1b42485bbb712870489b78553", + "language": "C++", + "lines": 1709, + "truncated": false, + "block": 9, + "row": 1079 + }, + { + "path": "yggdrasil_decision_forests/learner/random_forest/random_forest.h", + "sha256": "db5651f8b0f4e91b3a4307da3316f79589c9b5af2ae33b8b54af29dc56d3da46", + "language": "C/C++", + "lines": 449, + "truncated": false, + "block": 9, + "row": 1782 + }, + { + "path": "yggdrasil_decision_forests/learner/random_forest/random_forest_hparams_templates.cc", + "sha256": "3ee0d1d501d1d2f4de5dad5bd66c064b607d36f1c6403095d0230e0095546466", + "language": "C++", + "lines": 138, + "truncated": false, + "block": 9, + "row": 551 + }, + { + "path": "yggdrasil_decision_forests/learner/random_forest/random_forest_test.cc", + "sha256": "fea12fb4113775b04e1f9348ec2ae4f7d4cc0b4feadc49d8d4cebb54ed95286f", + "language": "C++", + "lines": 1949, + "truncated": false, + "block": 9, + "row": 1088 + }, + { + "path": "yggdrasil_decision_forests/learner/random_forest/random_forest_tuner_test.cc", + "sha256": "2544cccefbd8a5c29b38039471b76c27e4df3e1c6e3d716b48a936684fc46d1f", + "language": "C++", + "lines": 88, + "truncated": false, + "block": 9, + "row": 390 + }, + { + "path": "yggdrasil_decision_forests/metric/comparison.cc", + "sha256": "010a557da556c4f48aef34781a6d9412b817cbc8e52b63c7ce6bdce8cf50a5e8", + "language": "C++", + "lines": 371, + "truncated": false, + "block": 9, + "row": 881 + }, + { + "path": "yggdrasil_decision_forests/metric/comparison.h", + "sha256": "0a2d3d62161bd9e8d1dc06e79d5aeb06d61bf271478fca4ebe30875c8f7d21db", + "language": "C/C++", + "lines": 79, + "truncated": false, + "block": 9, + "row": 1460 + }, + { + "path": "yggdrasil_decision_forests/metric/comparison_test.cc", + "sha256": "ee21e47c43fb5400f32a10f580a4df679fb5400ad0e067c0dc206bcb9bd5e7e2", + "language": "C++", + "lines": 252, + "truncated": false, + "block": 9, + "row": 713 + }, + { + "path": "yggdrasil_decision_forests/metric/labels.h", + "sha256": "c490b895716cbd9afe74c2545df90d04b2644bc9adff7514a4602427f55bf58a", + "language": "C/C++", + "lines": 53, + "truncated": false, + "block": 9, + "row": 1333 + }, + { + "path": "yggdrasil_decision_forests/metric/metric.cc", + "sha256": "913b5c65be9c70e60f4faad04acedf56a8759ebbb0afd704f5e56e62bb8d04f6", + "language": "C++", + "lines": 2616, + "truncated": false, + "block": 9, + "row": 1097 + }, + { + "path": "yggdrasil_decision_forests/metric/metric.h", + "sha256": "6924239e5141b43fd90e544256fb612e67b29d8d4a5dc9f372a57128396311f4", + "language": "C/C++", + "lines": 399, + "truncated": false, + "block": 9, + "row": 1768 + }, + { + "path": "yggdrasil_decision_forests/metric/metric_test.cc", + "sha256": "bf5d1cb5b3c579d4b782d87a300b5877e87a862f8b2c9aaa403ea41ade857559", + "language": "C++", + "lines": 1971, + "truncated": false, + "block": 9, + "row": 1080 + }, + { + "path": "yggdrasil_decision_forests/metric/ranking_ap.cc", + "sha256": "6c17d914f1dedf566534cda9210fa03066a0bfcf5f2806ba9c8d0463b8a61d69", + "language": "C++", + "lines": 50, + "truncated": false, + "block": 9, + "row": 248 + }, + { + "path": "yggdrasil_decision_forests/metric/ranking_ap.h", + "sha256": "e9aaf3d0003961e35a815033aa33c0af32f8e75017dec64dfd9408b55718d842", + "language": "C/C++", + "lines": 47, + "truncated": false, + "block": 9, + "row": 1214 + }, + { + "path": "yggdrasil_decision_forests/metric/ranking_mrr.cc", + "sha256": "0d3016209b2c9d9a955e824f2c21f041ba1ca8cdef41df1120b9cbbd2d0c78ea", + "language": "C++", + "lines": 42, + "truncated": false, + "block": 9, + "row": 226 + }, + { + "path": "yggdrasil_decision_forests/metric/ranking_mrr.h", + "sha256": "334d6e9c19dafc455dc8e836498df8f89e8ca1996ef912d9d45a3ebc90659029", + "language": "C/C++", + "lines": 47, + "truncated": false, + "block": 9, + "row": 1215 + }, + { + "path": "yggdrasil_decision_forests/metric/ranking_ndcg.cc", + "sha256": "56aa6fd1eff7a2594fde4d63457c6ca80ebb551e75f6200e7b80de6608c9c27a", + "language": "C++", + "lines": 133, + "truncated": false, + "block": 9, + "row": 439 + }, + { + "path": "yggdrasil_decision_forests/metric/ranking_ndcg.h", + "sha256": "c63898bd3b8164bd7c26eb323ac82918982fd7561ae8488241dd6c28bc813ca2", + "language": "C/C++", + "lines": 79, + "truncated": false, + "block": 9, + "row": 1376 + }, + { + "path": "yggdrasil_decision_forests/metric/ranking_utils.h", + "sha256": "61afba858826805b32ee69ddff8a65e42e0deaefdd4029bdbf952e067ea1d652", + "language": "C/C++", + "lines": 45, + "truncated": false, + "block": 9, + "row": 1216 + }, + { + "path": "yggdrasil_decision_forests/metric/report.cc", + "sha256": "fd66b62ef0c7b45310fdc4b675db5b3c1e74ed25640c5325744180289b830947", + "language": "C++", + "lines": 741, + "truncated": false, + "block": 9, + "row": 987 + }, + { + "path": "yggdrasil_decision_forests/metric/report.h", + "sha256": "a712acc5be6ea8dd62a462cc3d0b23371e45f1cce87d8d62852e43c73a66b380", + "language": "C/C++", + "lines": 71, + "truncated": false, + "block": 9, + "row": 1383 + }, + { + "path": "yggdrasil_decision_forests/metric/report_test.cc", + "sha256": "3f11303bc8cc481e2d18057b9c1caf7e59c09677f15e77ef67f795829f3fc99a", + "language": "C++", + "lines": 203, + "truncated": false, + "block": 9, + "row": 645 + }, + { + "path": "yggdrasil_decision_forests/metric/uplift.cc", + "sha256": "1eb85fdfba09b15c16f712029b09dac1b9cd3087df0e78709533ff9098a55b70", + "language": "C++", + "lines": 225, + "truncated": false, + "block": 9, + "row": 684 + }, + { + "path": "yggdrasil_decision_forests/metric/uplift.h", + "sha256": "49d40b574e130ff424fd740b5eb349ed400784e85a39588fdccd711a581bfc4e", + "language": "C/C++", + "lines": 80, + "truncated": false, + "block": 9, + "row": 1377 + }, + { + "path": "yggdrasil_decision_forests/metric/uplift_test.cc", + "sha256": "e27ee5138d8b7dec1f3256cccc83f8b01cb96aa4dee1fcfff9234cc147cc71f4", + "language": "C++", + "lines": 146, + "truncated": false, + "block": 9, + "row": 544 + }, + { + "path": "yggdrasil_decision_forests/model/abstract_model.cc", + "sha256": "11e1210636e80179ad8ace34cb4d30744323c93d30f6eabeb8513ec2f08fa657", + "language": "C++", + "lines": 1735, + "truncated": false, + "block": 9, + "row": 1078 + }, + { + "path": "yggdrasil_decision_forests/model/abstract_model.h", + "sha256": "5e07b6e2ea4a99f0b2c2fffc87fced267e39a7ee6a3ed8a314f262fca7d046fe", + "language": "C/C++", + "lines": 762, + "truncated": false, + "block": 9, + "row": 1823 + }, + { + "path": "yggdrasil_decision_forests/model/abstract_model_test.cc", + "sha256": "21f35c558f0df1852a09ad9d2e5a1c1a9227e726e14baf1df7c32fddefdbf54d", + "language": "C++", + "lines": 673, + "truncated": false, + "block": 9, + "row": 959 + }, + { + "path": "yggdrasil_decision_forests/model/decision_tree/builder.cc", + "sha256": "17a8480739bdbca311a478a105f3e265634f06aa25f20a9c6d41c111fdbe2a50", + "language": "C++", + "lines": 96, + "truncated": false, + "block": 9, + "row": 435 + }, + { + "path": "yggdrasil_decision_forests/model/decision_tree/builder.h", + "sha256": "10f447431669b88a6ed65504cb12cc4105301180d40e23ea73a5c40692d76624", + "language": "C/C++", + "lines": 68, + "truncated": false, + "block": 9, + "row": 1325 + }, + { + "path": "yggdrasil_decision_forests/model/decision_tree/builder_test.cc", + "sha256": "e24e61ec0196681327b9772309623cd53301b5b6a6ad57d7a99e0b4a83cb2255", + "language": "C++", + "lines": 77, + "truncated": false, + "block": 9, + "row": 354 + }, + { + "path": "yggdrasil_decision_forests/model/decision_tree/decision_forest_interface.h", + "sha256": "c57ac7eed1e831cbea49dc84e32a8298ea32c4c1c2133eebb59ac9d83953aa2b", + "language": "C/C++", + "lines": 96, + "truncated": false, + "block": 9, + "row": 1468 + }, + { + "path": "yggdrasil_decision_forests/model/decision_tree/decision_tree.cc", + "sha256": "24d5a60416072114e7351f2f08219cae7fd47fd915d2cd70bd104c67873850b8", + "language": "C++", + "lines": 2308, + "truncated": false, + "block": 9, + "row": 1095 + }, + { + "path": "yggdrasil_decision_forests/model/decision_tree/decision_tree.h", + "sha256": "973835e6bbd84755f6473618ddc831ea6632e97b47d9162dead688472933875d", + "language": "C/C++", + "lines": 508, + "truncated": false, + "block": 9, + "row": 1793 + }, + { + "path": "yggdrasil_decision_forests/model/decision_tree/decision_tree_io.cc", + "sha256": "895a2facb7b978f83bec36807e9437b82e9176218c78e10e482dd7c7ed554f15", + "language": "C++", + "lines": 173, + "truncated": false, + "block": 9, + "row": 614 + }, + { + "path": "yggdrasil_decision_forests/model/decision_tree/decision_tree_io.h", + "sha256": "9308148be2336798d16de713537ee2d95fb853a17cab39012fa6f451d153db73", + "language": "C/C++", + "lines": 75, + "truncated": false, + "block": 9, + "row": 1404 + }, + { + "path": "yggdrasil_decision_forests/model/decision_tree/decision_tree_io_blob_sequence.cc", + "sha256": "ef00a66e3a0a0ddab2b1641401e0df6417968f4466dcfa64ac6c6aea78b34aac", + "language": "C++", + "lines": 67, + "truncated": false, + "block": 9, + "row": 336 + }, + { + "path": "yggdrasil_decision_forests/model/decision_tree/decision_tree_io_interface.h", + "sha256": "059d306f8739d5f99bfb584b79f5dff60fe9f11eee859a8c7e0c9f9e0f3f974d", + "language": "C/C++", + "lines": 61, + "truncated": false, + "block": 9, + "row": 1316 + }, + { + "path": "yggdrasil_decision_forests/model/decision_tree/decision_tree_test.cc", + "sha256": "e2cc82f64adc771fa6a109cfde9fb513784674d8c2348c43b0200561907ef70a", + "language": "C++", + "lines": 1449, + "truncated": false, + "block": 9, + "row": 1041 + }, + { + "path": "yggdrasil_decision_forests/model/decision_tree/structure_analysis.cc", + "sha256": "845e28e88011e57c863eb8214d3708f7f4047921b39096a40758c2227035bfe4", + "language": "C++", + "lines": 208, + "truncated": false, + "block": 9, + "row": 691 + }, + { + "path": "yggdrasil_decision_forests/model/decision_tree/structure_analysis.h", + "sha256": "546a692493c55c84f5e1ebf272f2d3a2655b66593a9e3d9687e9a538a2e55a55", + "language": "C/C++", + "lines": 91, + "truncated": false, + "block": 9, + "row": 1449 + }, + { + "path": "yggdrasil_decision_forests/model/describe.cc", + "sha256": "b5c312978f5110f10a6d55f83470c2199f13bc537608964d0a8c47dbddbc3cc3", + "language": "C++", + "lines": 742, + "truncated": false, + "block": 9, + "row": 962 + }, + { + "path": "yggdrasil_decision_forests/model/describe.h", + "sha256": "f69a49e190854346255106b26cfd2b94fca76d0cca5db5e22c11e6e2995edb7a", + "language": "C/C++", + "lines": 50, + "truncated": false, + "block": 9, + "row": 1280 + }, + { + "path": "yggdrasil_decision_forests/model/describe_test.cc", + "sha256": "7d5b831b6609b41b86329d12917b9ce45d63d26fc601f0ba77bfd64742040c8d", + "language": "C++", + "lines": 101, + "truncated": false, + "block": 9, + "row": 441 + }, + { + "path": "yggdrasil_decision_forests/model/evaluate_on_disk.cc", + "sha256": "2ce125e1541674848962c1b9f5609e8ace296d5722dda8ddcaa2108155e367af", + "language": "C++", + "lines": 160, + "truncated": false, + "block": 9, + "row": 605 + }, + { + "path": "yggdrasil_decision_forests/model/evaluate_on_disk.h", + "sha256": "efcfc551c192593d647fc3b07b0563b31bddeba02ef999edb586e2603ae922c5", + "language": "C/C++", + "lines": 43, + "truncated": false, + "block": 9, + "row": 1281 + }, + { + "path": "yggdrasil_decision_forests/model/fast_engine_factory.cc", + "sha256": "a138bff71e2570aed03676fa5efc64ce9d3dfb1c28707dd16e378c017ecde442", + "language": "C++", + "lines": 37, + "truncated": false, + "block": 9, + "row": 218 + }, + { + "path": "yggdrasil_decision_forests/model/fast_engine_factory.h", + "sha256": "1431bc8ef3afa8ef4901a0bbc6a98aaa035b9ee9b7e0bf9255bd4466eca901d6", + "language": "C/C++", + "lines": 63, + "truncated": false, + "block": 9, + "row": 1305 + }, + { + "path": "yggdrasil_decision_forests/model/gradient_boosted_trees/gradient_boosted_trees.cc", + "sha256": "2784d973ca2f3da0cf04a6095b18b54bee4bd0482b6c59ac01ba5d29318e28b9", + "language": "C++", + "lines": 1058, + "truncated": false, + "block": 9, + "row": 1034 + }, + { + "path": "yggdrasil_decision_forests/model/gradient_boosted_trees/gradient_boosted_trees.h", + "sha256": "0ca49ba59ba890912a94c3ea8e275a1573d2725a492848763ce353c020f8c8c6", + "language": "C/C++", + "lines": 320, + "truncated": false, + "block": 9, + "row": 1741 + }, + { + "path": "yggdrasil_decision_forests/model/gradient_boosted_trees/gradient_boosted_trees_test.cc", + "sha256": "001c8958fbbc8df84b0ecb183926b01c3b24bcf8dd859db6d70aea47ede629e9", + "language": "C++", + "lines": 472, + "truncated": false, + "block": 9, + "row": 924 + }, + { + "path": "yggdrasil_decision_forests/model/isolation_forest/isolation_forest.cc", + "sha256": "2df8c51491bc3b6504e28fa156f5f87991cae08bc3d00b8fb49fc57c621e3d5a", + "language": "C++", + "lines": 659, + "truncated": false, + "block": 9, + "row": 968 + }, + { + "path": "yggdrasil_decision_forests/model/isolation_forest/isolation_forest.h", + "sha256": "f093d9cc827dc608ae10f192d76aeaf49f04c2a701e7acdf62512ceb274de109", + "language": "C/C++", + "lines": 179, + "truncated": false, + "block": 9, + "row": 1634 + }, + { + "path": "yggdrasil_decision_forests/model/isolation_forest/isolation_forest_test.cc", + "sha256": "43a392912c686c9e56909be83644ed7277733a5acca7d0be88a24da36e424a5b", + "language": "C++", + "lines": 302, + "truncated": false, + "block": 9, + "row": 787 + }, + { + "path": "yggdrasil_decision_forests/model/metadata.cc", + "sha256": "001dd7d2fe3140340d9ef6f457feeaf43f775d1b77e086e55249807caa43b3f4", + "language": "C++", + "lines": 58, + "truncated": false, + "block": 9, + "row": 276 + }, + { + "path": "yggdrasil_decision_forests/model/metadata.h", + "sha256": "770004be7071cb3edb4712285ed9d01312109bc02bcdc27494f3cab45b017e5e", + "language": "C/C++", + "lines": 65, + "truncated": false, + "block": 9, + "row": 1302 + }, + { + "path": "yggdrasil_decision_forests/model/model_engine_wrapper.cc", + "sha256": "31c37ae25dc41d47c0542f323ac22c27cba459601908680eacebf33c409f9d6c", + "language": "C++", + "lines": 59, + "truncated": false, + "block": 9, + "row": 327 + }, + { + "path": "yggdrasil_decision_forests/model/model_engine_wrapper.h", + "sha256": "fe9a53ab8e9f7e047539d62cc7b91e081613a27fb3ae010e432e3d9a8e79f7f6", + "language": "C/C++", + "lines": 87, + "truncated": false, + "block": 9, + "row": 1440 + }, + { + "path": "yggdrasil_decision_forests/model/model_library.cc", + "sha256": "f754648c9fdf0f5295afb121f32a3b0b1b2cb9b081624bd942d830240424c716", + "language": "C++", + "lines": 273, + "truncated": false, + "block": 9, + "row": 768 + }, + { + "path": "yggdrasil_decision_forests/model/model_library.h", + "sha256": "1d995c7bd0b61c70c7e66c6bc7e155e31409bbfd126173f5794f9041e94e1605", + "language": "C/C++", + "lines": 89, + "truncated": false, + "block": 9, + "row": 1456 + }, + { + "path": "yggdrasil_decision_forests/model/model_library_test.cc", + "sha256": "d43bac9236b71245956dffc4497d8e60fba01e9a8c0185e838a92409045c2028", + "language": "C++", + "lines": 72, + "truncated": false, + "block": 9, + "row": 335 + }, + { + "path": "yggdrasil_decision_forests/model/model_testing.h", + "sha256": "4ed46d1afc011a93a247d05742acf2cd98332e6089c72d22c12174f4e0b5d054", + "language": "C/C++", + "lines": 61, + "truncated": false, + "block": 9, + "row": 1309 + }, + { + "path": "yggdrasil_decision_forests/model/multitasker/multitasker.cc", + "sha256": "92f1ef844a2ea322a6938e5ba59707925f3c33c76d427b5afd3e57bb5f206ae6", + "language": "C++", + "lines": 126, + "truncated": false, + "block": 9, + "row": 518 + }, + { + "path": "yggdrasil_decision_forests/model/multitasker/multitasker.h", + "sha256": "1ac1f83a98e94caafc952022c8e930559ec4f58f22d00b105eb2b04798f572c4", + "language": "C/C++", + "lines": 94, + "truncated": false, + "block": 9, + "row": 1446 + }, + { + "path": "yggdrasil_decision_forests/model/postprocessor/abstract_postprocessor.cc", + "sha256": "27caf6ab96db9b6c3a152fe7bc7b5d01deaef9f6ae5ca2ca2999d91bdd68f985", + "language": "C++", + "lines": 104, + "truncated": false, + "block": 9, + "row": 409 + }, + { + "path": "yggdrasil_decision_forests/model/postprocessor/abstract_postprocessor.h", + "sha256": "da6572871bf5415f7371f894ed32b5fe7007fe0ecf04daa64224d3ff0e2443ae", + "language": "C/C++", + "lines": 128, + "truncated": false, + "block": 9, + "row": 1586 + }, + { + "path": "yggdrasil_decision_forests/model/postprocessor/abstract_postprocessor_test.cc", + "sha256": "96fd7a545990ddce1ae2b6ae297cd65575793d9bc52010703505e31759b91b70", + "language": "C++", + "lines": 162, + "truncated": false, + "block": 9, + "row": 567 + }, + { + "path": "yggdrasil_decision_forests/model/postprocessor/postprocessor_library.cc", + "sha256": "540935625ba1ec877de29e78c6ee08cd62bbd60a2922a571f04863fbafb785dc", + "language": "C++", + "lines": 52, + "truncated": false, + "block": 9, + "row": 282 + }, + { + "path": "yggdrasil_decision_forests/model/postprocessor/postprocessor_library.h", + "sha256": "1b2d240c867db66b9192aa3b6701f88db7e6772aaaeff3435577658258f402f3", + "language": "C/C++", + "lines": 36, + "truncated": false, + "block": 9, + "row": 1195 + }, + { + "path": "yggdrasil_decision_forests/model/postprocessor/postprocessor_library_test.cc", + "sha256": "3a49fd2246ead0430980f933a9fb073f0d761bfd42b26c1f22b01aa6cb5ad427", + "language": "C++", + "lines": 65, + "truncated": false, + "block": 9, + "row": 319 + }, + { + "path": "yggdrasil_decision_forests/model/postprocessor/smoothed_pav_calibrator/smoothed_pav_calibrator.cc", + "sha256": "7b92cd7eb254ed143bce8ccc2b059433bdfb78865178cc50b845fb8cf1a0a7e1", + "language": "C++", + "lines": 156, + "truncated": false, + "block": 9, + "row": 595 + }, + { + "path": "yggdrasil_decision_forests/model/postprocessor/smoothed_pav_calibrator/smoothed_pav_calibrator.h", + "sha256": "9a7dcc6d33d3b0466cf16fdcb056210cc741641445b42839e5f9ed41bc7c46ed", + "language": "C/C++", + "lines": 99, + "truncated": false, + "block": 9, + "row": 1510 + }, + { + "path": "yggdrasil_decision_forests/model/postprocessor/smoothed_pav_calibrator/smoothed_pav_calibrator_test.cc", + "sha256": "61b0dca3c1d9bc84bcd57f0ab510da13635fdd5cf64e06a163e57cab973cbc30", + "language": "C++", + "lines": 224, + "truncated": false, + "block": 9, + "row": 669 + }, + { + "path": "yggdrasil_decision_forests/model/random_forest/random_forest.cc", + "sha256": "25b01e7ffbc72d8537e4968fa5dd4c0bd87c1ae08f2d241dbfd089b6c63eaf9d", + "language": "C++", + "lines": 823, + "truncated": false, + "block": 9, + "row": 993 + }, + { + "path": "yggdrasil_decision_forests/model/random_forest/random_forest.h", + "sha256": "61abcbea7de5259be95e40eb7cb9480fba398e62705e19e63f326b4b5e8c2f01", + "language": "C/C++", + "lines": 320, + "truncated": false, + "block": 9, + "row": 1740 + }, + { + "path": "yggdrasil_decision_forests/model/random_forest/random_forest_test.cc", + "sha256": "8c0eaa4e4465e4913c97a7d7a0a4febfc9faf59a5c05a6aabaf6691e840da2e1", + "language": "C++", + "lines": 542, + "truncated": false, + "block": 9, + "row": 929 + }, + { + "path": "yggdrasil_decision_forests/port/go/cli/benchmark_inference/benchmark_inference.go", + "sha256": "95999ae98584980b7338ef46179dc4a49411125c72f6230fbdf57739beb9b5e2", + "language": "Go", + "lines": 279, + "truncated": false, + "block": 9, + "row": 1970 + }, + { + "path": "yggdrasil_decision_forests/port/go/cli/benchmark_inference/benchmark_inference_test.go", + "sha256": "5d6794480beb944ccf095a0cc4ab762cb03ca78456a6af43bdfb02870fd15d20", + "language": "Go", + "lines": 38, + "truncated": false, + "block": 9, + "row": 1945 + }, + { + "path": "yggdrasil_decision_forests/port/go/dataset/proto/data_spec.pb.go", + "sha256": "1c944b91b9153cf53669a3960eaeea6414068df5e979fe58e2caf30e770d79bc", + "language": "Go", + "lines": 2546, + "truncated": false, + "block": 9, + "row": 1982 + }, + { + "path": "yggdrasil_decision_forests/port/go/dataset/proto/proto.go", + "sha256": "67b6e5e1b3da217fc54ce220aa23ee530160c4a618edd7f0c1a0290038fe0832", + "language": "Go", + "lines": 31, + "truncated": false, + "block": 9, + "row": 1967 + }, + { + "path": "yggdrasil_decision_forests/port/go/dataset/proto/weight.pb.go", + "sha256": "1b59c8dc347bef58da73f2423dff0335499f1c558e28facb26a3983965fbd203", + "language": "Go", + "lines": 683, + "truncated": false, + "block": 9, + "row": 1977 + }, + { + "path": "yggdrasil_decision_forests/port/go/go.mod", + "sha256": "2f22d4e8324f53db998d31e833654e1d197679409fc2b5d0618b319ae0c3b475", + "language": "NEURON", + "lines": 7, + "truncated": false, + "block": 9, + "row": 6022 + }, + { + "path": "yggdrasil_decision_forests/port/go/metric/proto/metric.pb.go", + "sha256": "9b3ed5ae128e87cc043c6c760e61b91acbdba0bd2f7cc85789ba2b161f8856d4", + "language": "Go", + "lines": 3962, + "truncated": false, + "block": 9, + "row": 1983 + }, + { + "path": "yggdrasil_decision_forests/port/go/metric/proto/proto.go", + "sha256": "8a4ba6d541b29083801b050935f5bea6e0bca274a3b2edb17dd140c3f7dd72d2", + "language": "Go", + "lines": 28, + "truncated": false, + "block": 9, + "row": 1956 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/canonical/canonical.go", + "sha256": "147c68c2a0f07a62d9e319af0f453aa172d115b1252343f41392e5a7a9623c0e", + "language": "Go", + "lines": 42, + "truncated": false, + "block": 9, + "row": 1951 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/decisiontree/decisiontree.go", + "sha256": "76f90658b2752bb1bdb308465aa919e4d09522355b87e679c4af3cc9725b9398", + "language": "Go", + "lines": 143, + "truncated": false, + "block": 9, + "row": 1963 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/decisiontree/decisiontree_test.go", + "sha256": "07e5add38f03959e4db160bf8a1cc61ad979491803678893f2e420376b9e9002", + "language": "Go", + "lines": 37, + "truncated": false, + "block": 9, + "row": 1946 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/decisiontree/io/blobsequence/blob_sequence.go", + "sha256": "fbe1a16f65a19fbd0e926db34e8b4ea681bfeff090d1ec0a9987a1877271ac73", + "language": "Go", + "lines": 144, + "truncated": false, + "block": 9, + "row": 1965 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/decisiontree/io/canonical/canonical.go", + "sha256": "06a8c9264dedbfabd8405012d467bc6f8f8c83eb8a83240b723d57174359012a", + "language": "Go", + "lines": 22, + "truncated": false, + "block": 9, + "row": 1943 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/decisiontree/io/io.go", + "sha256": "3b6d0df23d5ec79b3418e230d487c27db6315513ea2612b7c02cbf7b9f5c3edb", + "language": "Go", + "lines": 103, + "truncated": false, + "block": 9, + "row": 1954 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/decisiontree/proto/decision_tree.pb.go", + "sha256": "8c9c7014c9abe2e2200a4d90231607aa2538f991b602910ebecfe260f9563b68", + "language": "Go", + "lines": 1467, + "truncated": false, + "block": 9, + "row": 1980 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/decisiontree/proto/proto.go", + "sha256": "bc9f8cbaabb1a96ffbbe802d5ee50e6f04d7d7e79b52a869965ce2796c63b348", + "language": "Go", + "lines": 28, + "truncated": false, + "block": 9, + "row": 1960 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/gradientboostedtrees/gradientboostedtrees.go", + "sha256": "cd6f816af2f5299ea0925c8753ca102c1fd3e681108e6406028f9c399fbf2a81", + "language": "Go", + "lines": 104, + "truncated": false, + "block": 9, + "row": 1961 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/gradientboostedtrees/gradientboostedtrees_test.go", + "sha256": "1b2db7cc4d12250d523ff33e9d17dcbaa63d32861764f18a81669bb9838093bb", + "language": "Go", + "lines": 42, + "truncated": false, + "block": 9, + "row": 1950 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/gradientboostedtrees/proto/gradient_boosted_trees.pb.go", + "sha256": "97f44dc81a408bf2fc4dc72763811b5183a6588ec3724863a4cbedf84b285e96", + "language": "Go", + "lines": 634, + "truncated": false, + "block": 9, + "row": 1978 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/gradientboostedtrees/proto/proto.go", + "sha256": "54f849f1dfecf1769f94acac728c8693aa045b928641ac6f7aae019e6b35b1fc", + "language": "Go", + "lines": 28, + "truncated": false, + "block": 9, + "row": 1962 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/io/canonical/canonical.go", + "sha256": "c54129ea46c5b6264738f01e0c60a76b0340575e20232237624b7723fb60dc9b", + "language": "Go", + "lines": 46, + "truncated": false, + "block": 9, + "row": 1952 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/io/io.go", + "sha256": "630f220d48a7370d9222997a87b791b3f8fdd8212af2d7a69fa435c5a1739383", + "language": "Go", + "lines": 109, + "truncated": false, + "block": 9, + "row": 1966 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/io/io_test.go", + "sha256": "6671de1ce2ca7a3708fb876e2d72e201ae1b7cfaf584d9b3cda373a3b6725bb4", + "language": "Go", + "lines": 33, + "truncated": false, + "block": 9, + "row": 1944 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/model.go", + "sha256": "5a672f6eb06e1ff01bf4de14cda6e10697259b9db26d081e0edf9766b7173b53", + "language": "Go", + "lines": 61, + "truncated": false, + "block": 9, + "row": 1953 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/proto/abstract_model.pb.go", + "sha256": "97b9cb1382683b8cfad7b8aed724957d39753e2bd7dd7cb84f328fd0c726fef9", + "language": "Go", + "lines": 911, + "truncated": false, + "block": 9, + "row": 1979 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/proto/hyperparameter.pb.go", + "sha256": "08c4b0c81513f486a3b06af65c1b9c907740e2ecff1aec7760e1cdef135bcadc", + "language": "Go", + "lines": 1740, + "truncated": false, + "block": 9, + "row": 1981 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/proto/prediction.pb.go", + "sha256": "7d05c36d4a9d91dcb22dd8721c5a6714c73077975c9c214a4185db2d4054c9ac", + "language": "Go", + "lines": 690, + "truncated": false, + "block": 9, + "row": 1976 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/proto/proto.go", + "sha256": "9e4369d93925809978a7f7553440ed3db3286c063fc585312ee79f4df9310d7d", + "language": "Go", + "lines": 34, + "truncated": false, + "block": 9, + "row": 1969 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/randomforest/proto/proto.go", + "sha256": "57a757f3f2b6f4aa3994cd9c074be3edaeeef34d1c2f2c7d4d4d8fcf6b9af951", + "language": "Go", + "lines": 28, + "truncated": false, + "block": 9, + "row": 1959 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/randomforest/proto/random_forest.pb.go", + "sha256": "0ea956b30d7b65ebaf4d5a6711c06af7ee707753062ee6843291c3530d6814f2", + "language": "Go", + "lines": 360, + "truncated": false, + "block": 9, + "row": 1973 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/randomforest/randomforest.go", + "sha256": "acaf5194897143165158317b788536c361b311edb0cae5710097c3a253c229fc", + "language": "Go", + "lines": 104, + "truncated": false, + "block": 9, + "row": 1958 + }, + { + "path": "yggdrasil_decision_forests/port/go/model/randomforest/randomforest_test.go", + "sha256": "7a6515f3ad2ddaba0b84bc22c91f0252fe8506d17f20079b1eed6ae157b8ad41", + "language": "Go", + "lines": 42, + "truncated": false, + "block": 9, + "row": 1949 + }, + { + "path": "yggdrasil_decision_forests/port/go/serving/decisionforest/decisionforest.go", + "sha256": "2268a1ee1ba711c69b31912b7ac2cf981ec433b3104c854984ecb3621dae4f81", + "language": "Go", + "lines": 572, + "truncated": false, + "block": 9, + "row": 1975 + }, + { + "path": "yggdrasil_decision_forests/port/go/serving/decisionforest/decisionforest_test.go", + "sha256": "c48bf9c37733c8386c0fc67b77a5720f7fcb26725c6e610b5febf48b365b4231", + "language": "Go", + "lines": 42, + "truncated": false, + "block": 9, + "row": 1947 + }, + { + "path": "yggdrasil_decision_forests/port/go/serving/engine/engine.go", + "sha256": "0ed226b5c1ad13a1cbd6e3b8e5e2eddf0be33ded45c7b60a24a39482fe75ebe6", + "language": "Go", + "lines": 93, + "truncated": false, + "block": 9, + "row": 1964 + }, + { + "path": "yggdrasil_decision_forests/port/go/serving/example/example.go", + "sha256": "21992713cb1795c01996c54201a44432d9bd130632619bdf615425a63466978c", + "language": "Go", + "lines": 417, + "truncated": false, + "block": 9, + "row": 1972 + }, + { + "path": "yggdrasil_decision_forests/port/go/serving/serving.go", + "sha256": "df626bd603cf65f4d2c7613821caaeb28c1d371cd94274f9fdb88094ce44fac5", + "language": "Go", + "lines": 124, + "truncated": false, + "block": 9, + "row": 1968 + }, + { + "path": "yggdrasil_decision_forests/port/go/serving/serving_test.go", + "sha256": "6be6bac5316c1a8440d27ca1ba04aad1b1d853b763d7df9dc81c9dec80ea51bd", + "language": "Go", + "lines": 301, + "truncated": false, + "block": 9, + "row": 1971 + }, + { + "path": "yggdrasil_decision_forests/port/go/utils/file/file.go", + "sha256": "d0dd34c0fe6b4ff401ec5f2170756d3232165238bf9ebf5ca098e6258983ece3", + "language": "Go", + "lines": 107, + "truncated": false, + "block": 9, + "row": 1955 + }, + { + "path": "yggdrasil_decision_forests/port/go/utils/proto/distribution.pb.go", + "sha256": "317d99a5a5415ccffddc1104e721a0b02fcb648e0a3aa897743ae0ddc5279117", + "language": "Go", + "lines": 516, + "truncated": false, + "block": 9, + "row": 1974 + }, + { + "path": "yggdrasil_decision_forests/port/go/utils/proto/proto.go", + "sha256": "ca4f6b4cf6c97769b0d5f43cb12216870e3bb89dfe26a4821e702c798f7f9552", + "language": "Go", + "lines": 28, + "truncated": false, + "block": 9, + "row": 1957 + }, + { + "path": "yggdrasil_decision_forests/port/go/utils/test/test.go", + "sha256": "9f167e3eb8b4e4b75dffae0800a50831de60ba9113dea07275b964d3a3aedab9", + "language": "Go", + "lines": 38, + "truncated": false, + "block": 9, + "row": 1948 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/inference/externs.js", + "sha256": "56b6685c31ee02dc3c805de143b5f7d8280eb47166430af966a4766a00ba059c", + "language": "JavaScript", + "lines": 177, + "truncated": false, + "block": 9, + "row": 2059 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/inference/inference.cc", + "sha256": "969ede76c67f2ca851196cc09fe647cde1669a53096ccd170b03bed2339d9710", + "language": "C++", + "lines": 431, + "truncated": false, + "block": 9, + "row": 879 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/inference/karma.conf.js", + "sha256": "a3720a8b1bcc8fdf4918607ae2d771a937a9028ae3fe4999f6e65cb4412cce20", + "language": "JavaScript", + "lines": 93, + "truncated": false, + "block": 9, + "row": 2046 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/inference/npm/test/inference.test.js", + "sha256": "254a02ae8eded9af40cd9dad42ea930013fc52018d55d36fb303a933f660d645", + "language": "JavaScript", + "lines": 96, + "truncated": false, + "block": 9, + "row": 2050 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/inference/wrapper.js", + "sha256": "10634f88e6e763e792b3cd131b48ac3e9d12ed40bee56b82b32321bf8dcfa01c", + "language": "JavaScript", + "lines": 667, + "truncated": false, + "block": 9, + "row": 2107 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/inference/wrapper_test.js", + "sha256": "84d657b9d7c5ea18f49998098c75d5df72a79e4eef3c2589e8ee8e3705207d7e", + "language": "JavaScript", + "lines": 520, + "truncated": false, + "block": 9, + "row": 2098 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/tools/build_and_run_local_server.sh", + "sha256": "10441b81e248008f29ca74a871a583fa168e215a98207c371253b906b8faca57", + "language": "Shell", + "lines": 63, + "truncated": false, + "block": 9, + "row": 14253 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/tools/build_zipped_library.sh", + "sha256": "eafde83f962ac954b3a0b5324053d9addb697b5249cf75b6c0c6b279595d8ee4", + "language": "Shell", + "lines": 54, + "truncated": false, + "block": 9, + "row": 14257 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/dataset/dataset.cc", + "sha256": "5ce95ab6cdb6be56a267b25ec7b7905be24f2b56a4ec3157616823a0bc81615a", + "language": "C++", + "lines": 298, + "truncated": false, + "block": 9, + "row": 748 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/dataset/dataset.h", + "sha256": "483c4b0a421c54c0b54f5e19f8d83009094e54b31a7e03d690f53ce740c05e4a", + "language": "C/C++", + "lines": 48, + "truncated": false, + "block": 9, + "row": 1223 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/dataset/dataset.ts", + "sha256": "2578fd21d9088319b83a2b5e1df90c42c7aae4264959c043313a961cdac4da29", + "language": "TypeScript", + "lines": 74, + "truncated": false, + "block": 9, + "row": 14751 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/karma.conf.js", + "sha256": "9d1c08b685d541edbbc0185a5d2338a1ee6cd92ae92788df2c75ea5c813f4396", + "language": "JavaScript", + "lines": 66, + "truncated": false, + "block": 9, + "row": 2043 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/learner/learner.cc", + "sha256": "8cc9166b65fe1c51d9c7bd321c17742062681de4366ab5132c9e2d52ee692e94", + "language": "C++", + "lines": 142, + "truncated": false, + "block": 9, + "row": 548 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/learner/learner.h", + "sha256": "71f7404d5cdcd24a8a0d103e56864052a8662170b5298070c4f8f7bc70f08946", + "language": "C/C++", + "lines": 47, + "truncated": false, + "block": 9, + "row": 1239 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/learner/learner.ts", + "sha256": "bf5f3afb6a228442a3c0409a99048fee8837fa4a0573069ef72a0c86463b9c8f", + "language": "TypeScript", + "lines": 125, + "truncated": false, + "block": 9, + "row": 14753 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/model/model.cc", + "sha256": "9c281a041400cdd9475b296bf499f1c20f603931fbfc158ba1397ff0fabe5a9e", + "language": "C++", + "lines": 261, + "truncated": false, + "block": 9, + "row": 734 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/model/model.h", + "sha256": "29fdd869e4a9bec89b794378aa07c6cc8546ae419bd9136e173388e72e68867b", + "language": "C/C++", + "lines": 118, + "truncated": false, + "block": 9, + "row": 1486 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/model/model.ts", + "sha256": "00f4d3c426097058a7696c0ba61ed560ae1452722bf2c7333daeb37bc364add1", + "language": "TypeScript", + "lines": 418, + "truncated": false, + "block": 9, + "row": 14756 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/npm/test/training.test.js", + "sha256": "88164c7c15abfe6d284616cc666a4f6d8018c2ee13d0e5ee03b4499f49a5e31f", + "language": "JavaScript", + "lines": 69, + "truncated": false, + "block": 9, + "row": 2048 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/training.cc", + "sha256": "8a98df6c8c5f8169dfe877fe3753ffc4b1df85e601c0b428c1eafc6fe50a2758", + "language": "C++", + "lines": 81, + "truncated": false, + "block": 9, + "row": 362 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/training.ts", + "sha256": "395dab1ec9566a53cbaf80499e1dd24423c5777195f574e328df70a7db58ab24", + "language": "TypeScript", + "lines": 37, + "truncated": false, + "block": 9, + "row": 14750 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/training_for_types.d.ts", + "sha256": "198c9b50c38c474cd25b30191c311c80e263397468ec864cc3cd9752c92c9a48", + "language": "TypeScript", + "lines": 126, + "truncated": false, + "block": 9, + "row": 14754 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/training_test.ts", + "sha256": "690d2475225eaf34ba2bbd6f329d9d8ca66146c855e0cbf88a223a5f8aef026e", + "language": "TypeScript", + "lines": 264, + "truncated": false, + "block": 9, + "row": 14755 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/util/conversion.ts", + "sha256": "a33ed57c35024ebd9be3ad10f6a27bd5684096494de86af1f7e1c30a169c697b", + "language": "TypeScript", + "lines": 117, + "truncated": false, + "block": 9, + "row": 14752 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/util/status_casters.cc", + "sha256": "bde85fb62a52ec5431e6f790eeb5136869f747f33e40793421819f5be7553ead", + "language": "C++", + "lines": 44, + "truncated": false, + "block": 9, + "row": 217 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/util/status_casters.h", + "sha256": "4b8e2198c1aa17009a202c59608702a6cc8b3188235e829621e454aea9bbaf2c", + "language": "C/C++", + "lines": 22, + "truncated": false, + "block": 9, + "row": 1148 + }, + { + "path": "yggdrasil_decision_forests/port/javascript/training/webpack.config.js", + "sha256": "3956d192870250e97d584be1f68b2c0519b6f4c379fd6c0272076b23167d332e", + "language": "JavaScript", + "lines": 41, + "truncated": false, + "block": 9, + "row": 2035 + }, + { + "path": "yggdrasil_decision_forests/port/python/config/setup.py", + "sha256": "59f06547f12fea434ed920e24dfaa71d3902d155328e7f0a518ad91c4a65ff40", + "language": "Python", + "lines": 157, + "truncated": false, + "block": 9, + "row": 9474 + }, + { + "path": "yggdrasil_decision_forests/port/python/examples/minimal.py", + "sha256": "aefdcf62b4e915f112e272cab4072256b53db8eaeef6a922a7f2a273bc3b908a", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 7882 + }, + { + "path": "yggdrasil_decision_forests/port/python/tools/build_test_linux.sh", + "sha256": "bd4b1b0d2ce969704aa6a54b047cd98d358c33c4e4e9366db9b544ed56ffaa02", + "language": "Shell", + "lines": 71, + "truncated": false, + "block": 9, + "row": 14267 + }, + { + "path": "yggdrasil_decision_forests/port/python/tools/change_version.sh", + "sha256": "b839cd9afbf5b0bc37ebc541355a2e09cb1a37d388813ca1d4219cf32f4713bb", + "language": "Shell", + "lines": 127, + "truncated": false, + "block": 9, + "row": 14319 + }, + { + "path": "yggdrasil_decision_forests/port/python/tools/collect_pip_files.py", + "sha256": "2c7c38211c7a632d1731fa8b8a9edaff810da4452745b7da60a60bd889f9f557", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 9, + "row": 8330 + }, + { + "path": "yggdrasil_decision_forests/port/python/tools/local_copybara_export.sh", + "sha256": "1fd2d0740f09083227598731cdcc88f0339fb49326e12f820c20f62d90e29567", + "language": "Shell", + "lines": 50, + "truncated": false, + "block": 9, + "row": 14229 + }, + { + "path": "yggdrasil_decision_forests/port/python/tools/package_linux.sh", + "sha256": "75dc7ffbfdd5c50cfcf00857a5535f80ad9fa8798ba2604f2ef5f04070a298da", + "language": "Shell", + "lines": 160, + "truncated": false, + "block": 9, + "row": 14348 + }, + { + "path": "yggdrasil_decision_forests/port/python/tools/release_linux.sh", + "sha256": "766abb62d302edf495bca4caae9b58ee8c580d3b0bf9edc4e0ccee3d24d0089a", + "language": "Shell", + "lines": 69, + "truncated": false, + "block": 9, + "row": 14263 + }, + { + "path": "yggdrasil_decision_forests/port/python/tools/release_macos.sh", + "sha256": "e92d15087b002521423031d24ddd5065f7d12caccd97d48571d751cb10bc3d31", + "language": "Shell", + "lines": 38, + "truncated": false, + "block": 9, + "row": 14171 + }, + { + "path": "yggdrasil_decision_forests/port/python/tools/simple_test.py", + "sha256": "b188d308f34019689a09b0314bf3a9d2a68941a06e26ab3f296d92abd02a3eb0", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6925 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/__init__.py", + "sha256": "6ad16c9fe2c1ba039e2733061dc04416dd102cc592db8fde856e9df4c535864c", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 9480 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/api/__init__.py", + "sha256": "03f7aeb93001d10e002d9b092f7a0cfe9a6d67b0cc47d1c1b98f831b6d293ee0", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6717 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/api/experimental.py", + "sha256": "63020744955c66baa36cd0ba0ac8eee9ecb98bc808aac902bf27c15b2793091d", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7871 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/api/help.py", + "sha256": "43c45a0bc703098b892d4191ec224c5ff4a0adfe1aeae7d6ef39d420c6970031", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6941 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/api/internal.py", + "sha256": "f412707b21bdec58154801a32e6f84b7a85baa2aa17df850e6fc1364801e1973", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6902 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/api/util.py", + "sha256": "4f774a81cfd8cc690806edeb177f9fe3b3ca4c6643a9468d2820b9e302977a42", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 7043 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/api_test.py", + "sha256": "bd93bdb396ffb1a63fcfd326d8b4ad732b2a28a06a3f22f46ba99b1fdb56d7fd", + "language": "Python", + "lines": 332, + "truncated": false, + "block": 9, + "row": 10905 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/cc/__init__.py", + "sha256": "03f7aeb93001d10e002d9b092f7a0cfe9a6d67b0cc47d1c1b98f831b6d293ee0", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6717 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/cc/ydf.cc", + "sha256": "58449a8cc897c5ab05428033a343a4725e550b8abe38af3767fa8be4c392553b", + "language": "C++", + "lines": 46, + "truncated": false, + "block": 9, + "row": 222 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/__init__.py", + "sha256": "03f7aeb93001d10e002d9b092f7a0cfe9a6d67b0cc47d1c1b98f831b6d293ee0", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6717 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/dataset.cc", + "sha256": "b666a94f45d29c83284de67e6b8e4b3b0c7a2cce128f41e86e575589456a24a1", + "language": "C++", + "lines": 1273, + "truncated": false, + "block": 9, + "row": 1049 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/dataset.h", + "sha256": "8d38b04abc68150bac7734e56652d5d8d9f91d2ea6b7670389c5e1447efd13ae", + "language": "C/C++", + "lines": 27, + "truncated": false, + "block": 9, + "row": 1164 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/dataset.py", + "sha256": "cd42104873c2d01a132d285bccf1bccca284965b665e07fbc4ed2197f3946675", + "language": "Python", + "lines": 1584, + "truncated": false, + "block": 9, + "row": 12536 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/dataset_test.py", + "sha256": "e29c61148f1adf821e835ee173e507157fd60d13f0d03e20a94926fe919da9f5", + "language": "Python", + "lines": 3899, + "truncated": false, + "block": 9, + "row": 12678 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/dataset_with_tf_test.py", + "sha256": "05e6435cad452a18e0b2b5fc8c0fcf6b4d70a5c5929c06b6d9cd1cb51413b44b", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7663 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/dataspec.py", + "sha256": "e0601e2c0b30e9b5e94e5341c127962e60358d9f1cd1637f6bd0fdc02ceda93e", + "language": "Python", + "lines": 1042, + "truncated": false, + "block": 9, + "row": 12371 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/dataspec_test.py", + "sha256": "7fe5809073f3379e00c39933d426c0891a4d9fba32a99bf2332e2e768ad973e1", + "language": "Python", + "lines": 638, + "truncated": false, + "block": 9, + "row": 11972 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/io/__init__.py", + "sha256": "03f7aeb93001d10e002d9b092f7a0cfe9a6d67b0cc47d1c1b98f831b6d293ee0", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6717 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/io/dataset_io.py", + "sha256": "8d868058af3279f0d4a538fcc6d6935a5c924d5cae3f9e68594703c062701677", + "language": "Python", + "lines": 318, + "truncated": false, + "block": 9, + "row": 11037 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/io/dataset_io_test.py", + "sha256": "b30a06593dc1f267884af27571c6a516c8fd8cd72b3d9373d9746951316c5651", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 9, + "row": 8918 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/io/dataset_io_types.py", + "sha256": "34cad6bd7cc9ce7db37505ea0d9786a4aa651aecf0f160e0d218be32ce78511e", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 9, + "row": 8526 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/io/generator.py", + "sha256": "a569b5ae9a0809c7dd901bd95eb8b252c97e8c22a054ed4e8aaa8a86b52aefbe", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7654 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/io/numpy_io.py", + "sha256": "fb5c9a3bdb002bae73af39f513cd0e8675dcb8c03067ec198b59d8895418390d", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7846 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/io/numpy_io_test.py", + "sha256": "45aba4c86e1c87615df23dbdcd57740b5f338b18bac499260762e0018702eda4", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 8011 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/io/pandas_io.py", + "sha256": "7aed3d222edcf0e2833c8f553258c1b3d27e3062b905fd45203bc8b7b8df838c", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 8773 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/io/pandas_io_test.py", + "sha256": "35708459c856ff5283c9b87fe04fbede247c4e969a2d291cb44826e9429788e3", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 7992 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/io/polars_io.py", + "sha256": "fee25a3e74820ea739e37f02d57d8b345abd8b4e4f5831cc329d97064460cc6f", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 8002 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/io/polars_io_test.py", + "sha256": "7284369dcc45cddd6ea7375da1f70c802d6c2c864569c1bb4c5a80fbf92ca320", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7182 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/io/pyarrow_io.py", + "sha256": "895c9f37ea2c857e5101459252c082b3c755ef7aedf7ae02fccb73028d17cb17", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 9, + "row": 9313 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/io/pyarrow_io_test.py", + "sha256": "dc6b692f4a445159aebf4e49541687fd0ee298578743a33bb3c4f392d1884463", + "language": "Python", + "lines": 251, + "truncated": false, + "block": 9, + "row": 10760 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/io/pygrain_io.py", + "sha256": "db9510849de9c72d1dbf67c71830c84117614cc833e1623bf2a2fed1f12f6a5a", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 8542 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/io/pygrain_io_test.py", + "sha256": "7742a0689ba30359272d113dd5532de0485d8bdff716c96f37b36a67f35bf050", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 9, + "row": 10163 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/io/tensorflow_io.py", + "sha256": "403e6439c8a6873019fe0ba1eb0af1e811a492ff007d8be07362f062ec15025d", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7722 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/io/xarray_io.py", + "sha256": "933fb97d0206a227238155dd3b1d2ff948a1259652f9018ff3d58ae9b82948b4", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 7840 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/dataset/io/xarray_io_test.py", + "sha256": "a4aa77d52e20f2e0401eba220097d2f8e9c3139ce5d9932a5f8a23358909a13c", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8294 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/__init__.py", + "sha256": "03f7aeb93001d10e002d9b092f7a0cfe9a6d67b0cc47d1c1b98f831b6d293ee0", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6717 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/analysis.py", + "sha256": "392d5221fc2a6b09f418c1f3160a17f194d0aedbe1d32307e18b4d693ea5d7d8", + "language": "Python", + "lines": 472, + "truncated": false, + "block": 9, + "row": 11667 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/analysis_test.py", + "sha256": "6aea8dd20aad7602adde06ff34a89718ebc9df258554d62a6a800c7e0e99f0e1", + "language": "Python", + "lines": 723, + "truncated": false, + "block": 9, + "row": 12147 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/dataset.py", + "sha256": "15f7624a82dd98fde0acb5c4952d07f05b196e333dd01c700ccf43039cd7cb64", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7308 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/dataset_test.py", + "sha256": "bef46fa9ac190826f5e240bc918814c976af51a9390bab27605256d07d4625da", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7238 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/generic_jax.py", + "sha256": "c9c2309490212c8114301f29bee5bdf1cbbe3374eef81dc616eb4b1a337e8810", + "language": "Python", + "lines": 1438, + "truncated": false, + "block": 9, + "row": 12495 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/hyperparameter.py", + "sha256": "2333998717bc122cf08709771585beace4377e8e5a4d326a4982a2d0fb1ebe1f", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 9, + "row": 9164 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/hyperparameter_test.py", + "sha256": "4385805a784305135212e83d4f4f0f4dd7f0ac07c2eda3b74871fa0b2a745775", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7810 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/jax_fallback.py", + "sha256": "f58daba39a2798e0f7f52132f0946b615fdc1ddf780933ba65ec53857d0cfde4", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7310 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/layer.py", + "sha256": "778123b49a2e74d3700ebf79b2df121915be533fc8c7591fcbab4da5b28c809e", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 9, + "row": 8890 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/layer_test.py", + "sha256": "6d90f78bd12615f1a43cb0fbfaed7143f56a538513ff778f13829a2b95f85ca7", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7594 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/metric.py", + "sha256": "73ec2e1b8a6d06f574da416f18681aa0746e47ccaa60ce4eadee956ca11ea478", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 9, + "row": 8791 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/metric_test.py", + "sha256": "5c21318a4c15eb07605c040fcf4bb07a432809d9f5d869d804fc6da1901c28e2", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 7818 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/mlp.py", + "sha256": "dc22e798454a58890e8fdf6d04e600a90ed5424b4f9dd27e66a2a36031f751d0", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 9, + "row": 10387 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/mlp_test.py", + "sha256": "9033bf5b8a025dde1db39d15cc1761fb456c376e06f5711afd9b4bcc881823f2", + "language": "Python", + "lines": 248, + "truncated": false, + "block": 9, + "row": 10645 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/model_lib.py", + "sha256": "90554ba50d47673e32e25ebbf7abfcbeba38fd8b977422b1764a410e567daad3", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8917 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/preprocessor.py", + "sha256": "3163d1cd59df8781d8ff6fa68373f8a929714903c3baaefb19cf832845087c01", + "language": "Python", + "lines": 230, + "truncated": false, + "block": 9, + "row": 10454 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/preprocessor_test.py", + "sha256": "1e9d4f3cd6fa7093cb24843e9b6ad56763fe262f1286d11cab31088c91d938ad", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 9, + "row": 9286 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/safetensors_lib.py", + "sha256": "dade4fccfba4070c407a3c4e24ac2923a95f086bd2211c8251091b7ae8779689", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7718 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/safetensors_lib_test.py", + "sha256": "296cccaa2a8c055bee90e179e8b29bc5ee17d55ad84994d61f522305b0cf41b2", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 7870 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/tabular_transformer.py", + "sha256": "c38428485d359d11092bc36a7343200576df89e15787162e922be6af12901cfc", + "language": "Python", + "lines": 389, + "truncated": false, + "block": 9, + "row": 11341 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/deep/tabular_transformer_test.py", + "sha256": "2de4185c9625c29d5db26e5ddfb732851faec3c8f1a8dbe3305b82c79b639528", + "language": "Python", + "lines": 262, + "truncated": false, + "block": 9, + "row": 10596 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/__init__.py", + "sha256": "03f7aeb93001d10e002d9b092f7a0cfe9a6d67b0cc47d1c1b98f831b6d293ee0", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6717 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/abstract_feature_selector.py", + "sha256": "07c964147f0b7443f93b0273ca1c5cfe5b31ae127f6278d2709fe1c3793a4f4d", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 9, + "row": 8538 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/cart_learner_test.py", + "sha256": "16f73eada779b45c8f202a655417fef829761c6c80eefd108ff6bc917acc348e", + "language": "Python", + "lines": 479, + "truncated": false, + "block": 9, + "row": 11597 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/custom_loss.cc", + "sha256": "3ea88fa1a3b0106db17cb7073788d4d3e34adeb652af491894ff7666316189ea", + "language": "C++", + "lines": 344, + "truncated": false, + "block": 9, + "row": 875 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/custom_loss.h", + "sha256": "50a80bef9d8fe335a717e57a24b529a536da7a18662b1909ae877823b800935e", + "language": "C/C++", + "lines": 99, + "truncated": false, + "block": 9, + "row": 1502 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/custom_loss.py", + "sha256": "9042fc474e809339eb42e0dc23695d1f2fdc7f683c427acf7d8062674e82cc8a", + "language": "Python", + "lines": 268, + "truncated": false, + "block": 9, + "row": 10735 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/custom_loss_test.py", + "sha256": "781d8340a9b277cb4a162423a3b2857bb35acfa715ba25ec419dc0536b7cf154", + "language": "Python", + "lines": 754, + "truncated": false, + "block": 9, + "row": 12108 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/custom_metric.cc", + "sha256": "5f44fe083d46a44da6b085aba03ae9b782c6af3429e9d57d7a1ece722b3c6063", + "language": "C++", + "lines": 144, + "truncated": false, + "block": 9, + "row": 581 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/custom_metric.h", + "sha256": "bf930901038504e1cdbc7c633d4532c636d289c0638355a60c665d4347ec4fd2", + "language": "C/C++", + "lines": 87, + "truncated": false, + "block": 9, + "row": 1394 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/custom_metric.py", + "sha256": "1ec6e8c233dca9b4165974b7d4d7df5d7dae38180b6406d1f3b920fc06297747", + "language": "Python", + "lines": 149, + "truncated": false, + "block": 9, + "row": 9485 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/custom_metric_test.py", + "sha256": "364f1bba1795e3a0c1aea14a433fd12b76162c123fcc8e9b46ab6df32c71c08f", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 7772 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/distributed_learner_test.py", + "sha256": "13d8b5ead6ff5cfe87d903f021544912100213af4b2584abf5e92b694a0e6fc0", + "language": "Python", + "lines": 278, + "truncated": false, + "block": 9, + "row": 10593 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/feature_selector.py", + "sha256": "ee10618c1a9f50e1b6a878276129441ce9bc7497e09c0bfaa2f4782d92a9bec2", + "language": "Python", + "lines": 352, + "truncated": false, + "block": 9, + "row": 11356 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/feature_selector_test.py", + "sha256": "bc62b84fa81df7fde7fb737f4c837d5d1d25f2bf620de5417829c71c5bfe1742", + "language": "Python", + "lines": 304, + "truncated": false, + "block": 9, + "row": 11018 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/generic_learner.py", + "sha256": "70be6df3a8b1db0bdfe0e2d3f73abd640799e10c779e1a148265df0ce7c42a34", + "language": "Python", + "lines": 872, + "truncated": false, + "block": 9, + "row": 12258 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/generic_learner_test.py", + "sha256": "a42f1543f839fd72f32a4f4e9e7a655490845a35c4530ca65da34f018b9df883", + "language": "Python", + "lines": 366, + "truncated": false, + "block": 9, + "row": 11278 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/gradient_boosted_trees_learner_test.py", + "sha256": "2215994aed85fd74a7afe70b199b59a69d1e6198a2cd92e53d5504aaa4cdebf9", + "language": "Python", + "lines": 628, + "truncated": false, + "block": 9, + "row": 11932 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/hyperparameters.py", + "sha256": "d275538a03a8fdb2acc7222c08daad65b8accf9e6acce23ab6c869fd2e2c5501", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 9, + "row": 9598 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/hyperparameters_test.py", + "sha256": "ee28dedc5589ad6507fcbc764141630fffc2df9b10e096c21e2aff65eddb31ac", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 9, + "row": 9686 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/isolation_forest_learner_test.py", + "sha256": "533d5d2d9a10051db93e6a81bc9a1043e9ac6fa353a0efeba9bd704a6783af6e", + "language": "Python", + "lines": 240, + "truncated": false, + "block": 9, + "row": 10500 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/learner.cc", + "sha256": "b198de21d55e5ace47566f404cf0707a04936898b3ff2150fd46c6bf49a3b14e", + "language": "C++", + "lines": 385, + "truncated": false, + "block": 9, + "row": 884 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/learner.h", + "sha256": "2fd39436871f81b34884883c1942fdd3c65a1b0fd2157d9785fa32af074c2976", + "language": "C/C++", + "lines": 27, + "truncated": false, + "block": 9, + "row": 1170 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/learner_test_utils.py", + "sha256": "004b19d2a528db16fb0940dfe5c3a78c00e381a0e546df4d0185dddd602dd8ce", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 9, + "row": 9196 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/learner_with_tf_test.py", + "sha256": "72d340ad40a133d6a19be8737003fe0a6f2e7cc1a8150b37f33bf2f32d8ad40a", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 7764 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/learner_with_xarray_test.py", + "sha256": "a4fac7ad26c4506ac2c5e12f92b61dcffb7a2dc0fdb4c4e093d5cafed3615e84", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8135 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/random_forest_learner_test.py", + "sha256": "22a754f3f391083db31965087ccc18def2598df0a44ef39301d888fc7ad35477", + "language": "Python", + "lines": 984, + "truncated": false, + "block": 9, + "row": 12300 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/specialized_learners_pre_generated.py", + "sha256": "07f5856e5be71d8345de13e7ad0bee085a1e936683fb8a7bdd74452f3da18be2", + "language": "Python", + "lines": 3295, + "truncated": false, + "block": 9, + "row": 12693 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/tuner.py", + "sha256": "7aed082f010bf83db33cd65fb30ff060c40266a7c1e5c1333e47467aa18dc276", + "language": "Python", + "lines": 542, + "truncated": false, + "block": 9, + "row": 11825 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/tuner_test.py", + "sha256": "2b5959fa7185b76404f8935624eb83ee882315f882f2ce6c380ebb3dd90bacd6", + "language": "Python", + "lines": 392, + "truncated": false, + "block": 9, + "row": 11360 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/worker.cc", + "sha256": "55fee5a5dba5a6828f878f576c4f828346feaa650b56357bccf994d75ca7cf51", + "language": "C++", + "lines": 124, + "truncated": false, + "block": 9, + "row": 473 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/worker.h", + "sha256": "4ce546bf3e0568e6f024486d2f111c2a848e2cc0752f57fe546ce88b9463574c", + "language": "C/C++", + "lines": 27, + "truncated": false, + "block": 9, + "row": 1166 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/worker.py", + "sha256": "374bb62612645fe5ed553562467c9d467c75e7fd7874c377e82905cc1c5933ec", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 7963 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/worker_main.py", + "sha256": "60012ebf7ecae6a573b96f67c58149ab5247aad90396942a2d712ce33c9c68bb", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 9, + "row": 6989 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/wrapper/generate_wrapper.cc", + "sha256": "367c365aec05e30a981e1e0cc1096864546a8a4693da04803263093422a9c5e5", + "language": "C++", + "lines": 29, + "truncated": false, + "block": 9, + "row": 189 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/wrapper/wrapper_generator.cc", + "sha256": "46c12b78158dd936eeb9eb40b41ac9628308ecdc19eb61a905bafc70b0f3c553", + "language": "C++", + "lines": 1001, + "truncated": false, + "block": 9, + "row": 1030 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/wrapper/wrapper_generator.h", + "sha256": "19bd1749b73243d88e6b41d46f8b5f56c3ad3fe1d79cce0c0cc60eab4ce36ff5", + "language": "C/C++", + "lines": 89, + "truncated": false, + "block": 9, + "row": 1452 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/learner/wrapper/wrapper_test.cc", + "sha256": "e7c85d7aa33121ba8347b156522a4f936ca963d0ac330695accf8ed531ff8d47", + "language": "C++", + "lines": 461, + "truncated": false, + "block": 9, + "row": 931 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/metric/__init__.py", + "sha256": "03f7aeb93001d10e002d9b092f7a0cfe9a6d67b0cc47d1c1b98f831b6d293ee0", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6717 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/metric/display_metric.py", + "sha256": "659390abf987f724b085c02dc7832f9d62aed4fc4eba97bdfb7ccfbed5831006", + "language": "Python", + "lines": 719, + "truncated": false, + "block": 9, + "row": 11974 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/metric/evaluate.cc", + "sha256": "17353967651d69f75ca4ef236422c8fc584a413f0fe93f3f734ab1ad10d65acf", + "language": "C++", + "lines": 367, + "truncated": false, + "block": 9, + "row": 882 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/metric/evaluate.h", + "sha256": "54e358406a76aa06f60a7f8f4de1a878af785ee6a3f58409997fbd6f03f9370b", + "language": "C/C++", + "lines": 27, + "truncated": false, + "block": 9, + "row": 1165 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/metric/evaluate.py", + "sha256": "67bf53547145e64b0fe29a8bc0ebf456987d69a5fd494f5f3932b03a52effe9b", + "language": "Python", + "lines": 438, + "truncated": false, + "block": 9, + "row": 11561 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/metric/evaluate_test.py", + "sha256": "9012f3273ad35f1367a931223b136b13a96a66bb14f3af4be078f6311d79e73e", + "language": "Python", + "lines": 423, + "truncated": false, + "block": 9, + "row": 11422 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/metric/metric.cc", + "sha256": "45cf2d3c64fc0fc20012f81a21a36adcd033377df399c602a2a3758dbc2c9c82", + "language": "C++", + "lines": 61, + "truncated": false, + "block": 9, + "row": 273 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/metric/metric.h", + "sha256": "e66bf47a639a4fa379705c577be7c046b2efe5608a935abae9dfe9569ffe7d73", + "language": "C/C++", + "lines": 27, + "truncated": false, + "block": 9, + "row": 1163 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/metric/metric.py", + "sha256": "1f829628a5fc5c56a1a6c18cab05bf628e54c665fe37e01edd9955f88217570d", + "language": "Python", + "lines": 611, + "truncated": false, + "block": 9, + "row": 11723 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/metric/metric_test.py", + "sha256": "4be10554d3a416c87ce10bede67e5f3cf3235e55cc8acf3d22e24dfe45ebb1fc", + "language": "Python", + "lines": 370, + "truncated": false, + "block": 9, + "row": 10805 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/__init__.py", + "sha256": "03f7aeb93001d10e002d9b092f7a0cfe9a6d67b0cc47d1c1b98f831b6d293ee0", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6717 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/analysis.py", + "sha256": "fbd13b38b5bcf56790175b7bcfb447fd8cb3ba828035453b537cbfbf94b0a1b2", + "language": "Python", + "lines": 304, + "truncated": false, + "block": 9, + "row": 10751 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/decision_forest_model/__init__.py", + "sha256": "03f7aeb93001d10e002d9b092f7a0cfe9a6d67b0cc47d1c1b98f831b6d293ee0", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6717 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/decision_forest_model/decision_forest_model.py", + "sha256": "93287a252211693d1b144ae1e48e7c0ce18d901b08e5d8cdff46f1be3ad6b137", + "language": "Python", + "lines": 259, + "truncated": false, + "block": 9, + "row": 10392 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/decision_forest_model/decision_forest_model_test.py", + "sha256": "c4d24b02d3c82621490a3f5c927fe39e7c31e559deaac30a0bbdfa2ce812605c", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 9, + "row": 9583 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/decision_forest_model/decision_forest_wrapper.cc", + "sha256": "360bd42997e9a13308c3ab1ed8a88b436e088e6c255aff1550ee333dcb24a6bb", + "language": "C++", + "lines": 145, + "truncated": false, + "block": 9, + "row": 534 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/decision_forest_model/decision_forest_wrapper.h", + "sha256": "40d7879df5fe0b6bc84d5e013f3b91794a968ed09131390f4de35cb5e48f6a29", + "language": "C/C++", + "lines": 90, + "truncated": false, + "block": 9, + "row": 1448 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/export_cc_generator.py", + "sha256": "bf5670c91046692529f6fe84c8b7a614a7f32550f6b1d260f8f3f62d9b0bbeca", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7516 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/export_cc_run_test.cc", + "sha256": "9653be33dc1f5a26bd95a1095c7fc6fb9b1526d7be87351b88a2f8caf30df399", + "language": "C++", + "lines": 61, + "truncated": false, + "block": 9, + "row": 283 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/export_docker.py", + "sha256": "9bcd72748006465096f3d7e2d295be3b24b81496be64c2a152f80bfd86088d32", + "language": "Python", + "lines": 277, + "truncated": false, + "block": 9, + "row": 10378 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/export_docker_test.py", + "sha256": "169143b29343c242eea7b247821de7a8da1a3f7cbec8bacc551493b6a1a355f4", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 9, + "row": 9326 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/export_jax.py", + "sha256": "a1a6c0f5deb32c992a363401b4bee24b6a2f4444052e819b5b43321a369929b0", + "language": "Python", + "lines": 1311, + "truncated": false, + "block": 9, + "row": 12460 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/export_sklearn.py", + "sha256": "30f7bf7c7756065c2b30557feb58d5ff14ea73f928b83c1b8b91546a214bf0d4", + "language": "Python", + "lines": 455, + "truncated": false, + "block": 9, + "row": 11427 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/export_tf.py", + "sha256": "92c2c2276be790d59d826a3d0d69764ca21ba4d640ab00fd53e1b070a50fb7c5", + "language": "Python", + "lines": 752, + "truncated": false, + "block": 9, + "row": 12088 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/feature_selector_logs.py", + "sha256": "aec800432fbaff197b9bc202465649282737259e055112ea4329fddca0737b43", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7864 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/generic_model.py", + "sha256": "12b6f8dc28f512775cc413a66426082283d83e02a839ce723835d913bd770e75", + "language": "Python", + "lines": 2544, + "truncated": false, + "block": 9, + "row": 12640 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/gradient_boosted_trees_model/__init__.py", + "sha256": "03f7aeb93001d10e002d9b092f7a0cfe9a6d67b0cc47d1c1b98f831b6d293ee0", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6717 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/gradient_boosted_trees_model/gradient_boosted_trees_model.py", + "sha256": "752b29a3191649a60a73a68665d7c2113f3723a062bf5c37e1a3ca6c060fa58b", + "language": "Python", + "lines": 308, + "truncated": false, + "block": 9, + "row": 10987 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/gradient_boosted_trees_model/gradient_boosted_trees_model_test.py", + "sha256": "0c724f60f1f34690b57ea659b5893c3dcb0248a4df446d03d056933e094b579a", + "language": "Python", + "lines": 1036, + "truncated": false, + "block": 9, + "row": 12327 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/gradient_boosted_trees_model/gradient_boosted_trees_wrapper.cc", + "sha256": "064ed73e85c98c1da24eee59509613130b2d8066b7a73a254ad02a49170bc961", + "language": "C++", + "lines": 128, + "truncated": false, + "block": 9, + "row": 538 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/gradient_boosted_trees_model/gradient_boosted_trees_wrapper.h", + "sha256": "9d62b1eeecc47665b135c5983ca0aca04d3b69f1058b618e0606ee764aa751fd", + "language": "C/C++", + "lines": 102, + "truncated": false, + "block": 9, + "row": 1479 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/isolation_forest_model/__init__.py", + "sha256": "03f7aeb93001d10e002d9b092f7a0cfe9a6d67b0cc47d1c1b98f831b6d293ee0", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6717 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/isolation_forest_model/isolation_forest_model.py", + "sha256": "f58f15bac8a250f466eff52ab9ec089740754819b6ab66e11f8580a08c2c6f79", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 7112 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/isolation_forest_model/isolation_forest_model_test.py", + "sha256": "49fbd1d41d9b454562b1d6e87af7bf61d95dce65f8465a76a754b13fcfcc6162", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 9, + "row": 8801 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/isolation_forest_model/isolation_forest_wrapper.cc", + "sha256": "96c0e2b3c65c6a196ec864e3118d10b0d79034d1694e4f1ffc50233fd5e38212", + "language": "C++", + "lines": 43, + "truncated": false, + "block": 9, + "row": 241 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/isolation_forest_model/isolation_forest_wrapper.h", + "sha256": "c542208fd831ecbd22e34eb824362b6357e2b059966c2bf5b7d22428735d507c", + "language": "C/C++", + "lines": 65, + "truncated": false, + "block": 9, + "row": 1361 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/jax_model_test.py", + "sha256": "1d39141a7e25f2b198206beffc0ff11f1551e0f24313ccc5b40fb8c6a0d124ee", + "language": "Python", + "lines": 1400, + "truncated": false, + "block": 9, + "row": 12463 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/model.cc", + "sha256": "9639be4f6a1125edca3e0c4ef1bd92270b1b567fe32cccfc2337483a167e70a0", + "language": "C++", + "lines": 295, + "truncated": false, + "block": 9, + "row": 839 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/model.h", + "sha256": "930dc0f3c7983cfabf8c94aaa4fe0ffdf4896d7402c494d59b1192c25806b310", + "language": "C/C++", + "lines": 35, + "truncated": false, + "block": 9, + "row": 1185 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/model_lib.py", + "sha256": "fba206c8335eb0af2fc81134688b9ed3ea4d3cac83f1860b61afd469c861423f", + "language": "Python", + "lines": 260, + "truncated": false, + "block": 9, + "row": 10494 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/model_metadata.py", + "sha256": "609998f66b7de5608f619a56fbac19bcc8a4aec3b012296061dfa2fd403af991", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8571 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/model_test.py", + "sha256": "ffbbaedb293055415d067b998577c914f64f8a891dc1632e574797b8060fdc42", + "language": "Python", + "lines": 1454, + "truncated": false, + "block": 9, + "row": 12499 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/model_wrapper.cc", + "sha256": "d54c234a2cfa77d4c6f626edf2249edb2917d5fa1b837fec26883e14ba471bf2", + "language": "C++", + "lines": 584, + "truncated": false, + "block": 9, + "row": 952 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/model_wrapper.h", + "sha256": "0fba7ca8be38dcb5d84f066d3d78517b249544656a64bf8b8403f74ea8eba295", + "language": "C/C++", + "lines": 219, + "truncated": false, + "block": 9, + "row": 1664 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/optimizer_logs.py", + "sha256": "3e354a9498b73f73a55d9692eb8b19fa83afad9c53a04f4ac346bb4ecbdb61ed", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 9, + "row": 8320 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/optimizer_logs_test.py", + "sha256": "bfbfad747fc4a9d4617045a28de3568c22ab46db6578fedd625c11624d55eee2", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8276 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/random_forest_model/__init__.py", + "sha256": "03f7aeb93001d10e002d9b092f7a0cfe9a6d67b0cc47d1c1b98f831b6d293ee0", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6717 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/random_forest_model/random_forest_model.py", + "sha256": "24d2485baeb4a6368d5c67646206f3c97ee750e035283d5e358a2384a6fdeeeb", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 9, + "row": 9925 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/random_forest_model/random_forest_model_test.py", + "sha256": "b4cfeb1c0ab87ac606431a86e928c7d80a0f073978a53d5b884fdf59518d955c", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 8871 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/random_forest_model/random_forest_wrapper.cc", + "sha256": "93e25b14fc2dd164c73ce87dfd4d9913eb292cee1873d792c6522389ef893adf", + "language": "C++", + "lines": 42, + "truncated": false, + "block": 9, + "row": 237 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/random_forest_model/random_forest_wrapper.h", + "sha256": "7dea58e9e264ddccd2e211a449e2a78c54fde3ebb6c0f320b0cd5b2a6f352feb", + "language": "C/C++", + "lines": 67, + "truncated": false, + "block": 9, + "row": 1374 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/sklearn_model_test.py", + "sha256": "0d2fcf76d510749d106c050f7bebcca8fc9398b5c7e13a124ac7713f69f37583", + "language": "Python", + "lines": 246, + "truncated": false, + "block": 9, + "row": 10476 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/template_cpp_export.py", + "sha256": "4cb596808849b3b9b700f31e865fc7cc1e3b5b7d88dabe843494c143e9782a60", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 9, + "row": 10681 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/tf_model_test.py", + "sha256": "cbc87d40dc2ee5572a9eda5f7aaed71277d024dfcaafde45347530a7f545dcc8", + "language": "Python", + "lines": 1475, + "truncated": false, + "block": 9, + "row": 12508 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/tree/__init__.py", + "sha256": "696c575c2bcea053752b72ff8a7f40927a9b2a6fc51502188ac7b2d5ee8a41d9", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7891 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/tree/condition.py", + "sha256": "89d90e2d94c672c5d54e1bd7edc6e77d968fe76f1d4284f4bc93b5a3c878a7e7", + "language": "Python", + "lines": 718, + "truncated": false, + "block": 9, + "row": 11997 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/tree/condition_test.py", + "sha256": "a0ec9a1f1b04f2079add7af7c9107125b373259c34467269f22dc9ecc335c0ac", + "language": "Python", + "lines": 617, + "truncated": false, + "block": 9, + "row": 11868 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/tree/node.py", + "sha256": "293b8d377dc24d33705a1a2bb386ef6855e0fdff20dacf6943d5fe1c74d9728a", + "language": "Python", + "lines": 204, + "truncated": false, + "block": 9, + "row": 9716 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/tree/node_test.py", + "sha256": "9310ffc5f3ed30bab57877e3692322c002ccdfd7ec93fc368f83e9f6894ec87e", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7391 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/tree/plot.py", + "sha256": "2393eec1cf90b5b5302c5f56091598aa08fd3ea8e9f4c99ba1c7c875004867c1", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 9, + "row": 8875 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/tree/plot_test.py", + "sha256": "bc2b6f98743e21dfb46a2b37cb9946a8803156a0d930860f926499c520f17d03", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 9, + "row": 8079 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/tree/plotter.js", + "sha256": "81b6e3000006e748d96056e3d5606439fb822c0777b38cd4099cc674436ab437", + "language": "JavaScript", + "lines": 457, + "truncated": false, + "block": 9, + "row": 2092 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/tree/tree.py", + "sha256": "b4209d62a9beb029e47914b16d2432013a625c792a797291b697b78c77f8aa46", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 9, + "row": 9549 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/tree/tree_test.py", + "sha256": "34ec008e8a8dbe74998bd3c4c03e0ff5e0b916c2045c4949642b16ac81692964", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 9, + "row": 9632 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/tree/value.py", + "sha256": "32a007d8ee168756add1e62a3096785b5d0e624ce5be7ff997a10447b2fa754b", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 9, + "row": 10388 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/model/tree/value_test.py", + "sha256": "4036427b33c942183c36d29bc1c551b4e06630a2cd1092113e62f9cdb9450380", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 9332 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/monitoring/__init__.py", + "sha256": "03f7aeb93001d10e002d9b092f7a0cfe9a6d67b0cc47d1c1b98f831b6d293ee0", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6717 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/monitoring/benchmark_inference_speed.py", + "sha256": "fe5360f6315633f189a3f47fe204de189fcbfd2da9efbc42d07a034d072cf7e7", + "language": "Python", + "lines": 568, + "truncated": false, + "block": 9, + "row": 11503 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/monitoring/benchmark_inference_speed_test.py", + "sha256": "5b6196aeadf7f5a11a6b2a2545470f4d8c974eab6aa0e43613e50b653ed53a3b", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 8039 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/monitoring/benchmark_io_speed.py", + "sha256": "99cbd079d942d1310b04bb39fc66dd54ebf39d12b54f9b354fd05923387c207d", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 9, + "row": 9171 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/monitoring/benchmark_io_speed_main.py", + "sha256": "66b54dc4eec03be4944f21fb7cf5478b082a5c0174bfb1c6c258d4b064f2671f", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 7660 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/monitoring/benchmark_train_speed.py", + "sha256": "40fb630ae6ecf98c9777b2ac56dc79dbcba43ca0d7ec5338d8f4f8ef6fe9c63e", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 9, + "row": 9453 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/monitoring/benchmark_train_speed_main.py", + "sha256": "ada3e0505466ade02656b5cebffd4da468549ce209a6f7c66bd05a6b857cb363", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 8483 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/monitoring/benchmark_train_speed_test.py", + "sha256": "47ff832778a5b641cb2e41ad42d9930ca8012035181fb35867a3bda707019df1", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 7022 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/util/__init__.py", + "sha256": "03f7aeb93001d10e002d9b092f7a0cfe9a6d67b0cc47d1c1b98f831b6d293ee0", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6717 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/util/dataset_io.py", + "sha256": "ff96ff7786e7f3bfd03d3fb120a377bc0c585cd65a338f87b92c41076a62d198", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7032 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/util/help.py", + "sha256": "5f935fa67f0284bf59500032e384b4c81d774e9e2ac3d5392b4d3c98fe2c8603", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 9125 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/util/log_book.py", + "sha256": "2d391084d8a38d7145bb044e4c711a79ad108d1e92a98260a1f94a9f845cade2", + "language": "Python", + "lines": 290, + "truncated": false, + "block": 9, + "row": 10744 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/util/log_book_test.py", + "sha256": "c00cec4f9931c10fc77218381c83f074ab9b38c871980a6d4b5cff0105c7c9b1", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 9, + "row": 9523 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/util/tf_example.py", + "sha256": "c75fad5b4381e233875dd894a1683ec3154cc983d4dded4443cf08a7ac7b2070", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 9, + "row": 9402 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/util/tf_example_impl.py", + "sha256": "2c0b9a70b29f13cd7a50b76c45b0671767475e3b4737ca354253371cf3dd9780", + "language": "Python", + "lines": 437, + "truncated": false, + "block": 9, + "row": 11336 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/util/tf_example_test.py", + "sha256": "e9c16d3eb2e272f7a5f943cd569bed9055f166be6053405bc8a14f60ce0600a3", + "language": "Python", + "lines": 151, + "truncated": false, + "block": 9, + "row": 9585 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/util/vertex_ai.py", + "sha256": "58ff93fb41ade6b02a880e60ff39b7a2d0687ee312a672a6b4dfedcfbf9c151f", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 8528 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/util/vertex_ai_test.py", + "sha256": "fd585478b6a36e7a7d94b2798af4cc9872dafca077bc520b28a811dd86811b8f", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 8303 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/__init__.py", + "sha256": "03f7aeb93001d10e002d9b092f7a0cfe9a6d67b0cc47d1c1b98f831b6d293ee0", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6717 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/concurrency.py", + "sha256": "546f787a80b48b35da7f487298f639e649bc16784b4de12968e1d5ecacbedff9", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7285 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/custom_casters.h", + "sha256": "8e0b0fb927c4f6395a9d1a88e08519b09ff9c4f8cf8a173f708f521e3662ccd5", + "language": "C/C++", + "lines": 35, + "truncated": false, + "block": 9, + "row": 1199 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/documentation.py", + "sha256": "a265f955267566ab1ef8670e136d8ff8cc87ec10982cc0625e5a319c5cdbc27f", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 7076 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/filesystem.py", + "sha256": "8dfb4c803cb44842753dec4659dbf03c4c332bd38a4447568ad0732ff0cc243b", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6760 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/filesystem_default.py", + "sha256": "6202b7bd6e167d8b22e7a33e1584217f7c426928cb43c0c4e93a570a4005ca9f", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6761 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/filesystem_google.py", + "sha256": "ab16082bbae2103b0ba9d83f0b4b47941de524e43f937bcc3765b2bc84adf0e0", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6823 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/filesystem_test.py", + "sha256": "c82403d04aba5dbdceadd38edcaa058aef4c28ee9ccb8f79f37923c10c427554", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7324 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/func_helpers.py", + "sha256": "086d6faf409239e364551a461e66b76f98a76974458d95d5c6c84898ccbff17d", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7450 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/func_helpers_test.py", + "sha256": "02e96ec4b9a47738ef517c27fe53cbef7254703f644e1c07d962c759d447c455", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8404 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/html.py", + "sha256": "9ac4abac146452c999c88d06eb0ea465ae770f0a1e24922d45b6857bf5548cd2", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 9, + "row": 8457 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/html_test.py", + "sha256": "fcfee81cfc364d9d6f04e7c7958f64365d6f3ec9a8606c411f30450299b5590d", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7566 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/log.cc", + "sha256": "c32f919f931e73e86dde1e5289b2856573c81c79f0aeaa382b054c50366512b5", + "language": "C++", + "lines": 37, + "truncated": false, + "block": 9, + "row": 193 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/log.h", + "sha256": "7d943ca427fb0765dd6d4daa7eafc38b22b4ef8e5bd9cabbe362f960f2abe8d9", + "language": "C/C++", + "lines": 28, + "truncated": false, + "block": 9, + "row": 1162 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/log.py", + "sha256": "c48b49b9f657251622be74230c02edcae4746be77487b4094540f32809759acc", + "language": "Python", + "lines": 366, + "truncated": false, + "block": 9, + "row": 10733 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/numpy_data.cc", + "sha256": "56c739a21511f9572c664cb681c288512f50b9e0486ee0aa4ddb39c853545825", + "language": "C++", + "lines": 80, + "truncated": false, + "block": 9, + "row": 317 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/numpy_data.h", + "sha256": "bd579601869843f6f7f974f9bc91d0e04194918e8fb54b0e8d682aa4b1b8b234", + "language": "C/C++", + "lines": 109, + "truncated": false, + "block": 9, + "row": 1445 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/paths.py", + "sha256": "4e56d0f6f53cd9c6f2c099f670cad0663ef9cedf9657778c74914ba7e3a92ada", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 7780 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/paths_test.py", + "sha256": "9d3195d83f0b131dd08966d810eae29003963d9298993c287c9d270c6ba3b4ba", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7794 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/pybind.h", + "sha256": "c2436e4faf919fb21ef6fd52c5cd6534cb058ed7747922fde22c95451253c9a0", + "language": "C/C++", + "lines": 67, + "truncated": false, + "block": 9, + "row": 1322 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/pybind_test.py", + "sha256": "34baec82d5e1b125e1fc8164076325fa3da8bbc7b32131ce4417dde9264f8dc8", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 7923 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/pybind_test_helper.cc", + "sha256": "91fd05143eae44c4f1c35ef548236ce84e5b3c4560c79f2f6d092946700202f3", + "language": "C++", + "lines": 91, + "truncated": false, + "block": 9, + "row": 365 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/status_casters.h", + "sha256": "633bf708c642cf19a458a33acbebd697ee934193f89454b2e9753bf6a7237c79", + "language": "C/C++", + "lines": 217, + "truncated": false, + "block": 9, + "row": 1660 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/string_lib.py", + "sha256": "2dd5ca6f1c931bdecc659b4f970a710d89075b25d276f7da422eb8e55e97a6a0", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 9535 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/string_lib_test.py", + "sha256": "1f9c6b5bdf073091925d6469947e0b538b02dacc1399f7c3e65fcf4662669748", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 9, + "row": 9608 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/test_utils.py", + "sha256": "9f2354407bc37adced12eaacd649ade01fbdd396859d670e51ef78fcc4013bc7", + "language": "Python", + "lines": 271, + "truncated": false, + "block": 9, + "row": 10411 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/utils/test_utils_test.py", + "sha256": "18f2ddd646bb0e30ce3ec52985f0fe7a1b049017cef05023d536f5f774acbeec", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8372 + }, + { + "path": "yggdrasil_decision_forests/port/python/ydf/version.py", + "sha256": "8822e0e31e019414f9643d2c8207f70777c1377d751a1e0b7014fac79010f35c", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6740 + }, + { + "path": "yggdrasil_decision_forests/port/tensorflow/pip_pkg/setup.py", + "sha256": "7ff3a06a2a465d561486bbbd6e11f7bcd0e65b149af3a6cd2452db2490c57f9c", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 8909 + }, + { + "path": "yggdrasil_decision_forests/port/tensorflow/pip_pkg/test_pkg.py", + "sha256": "23664545aa396975335a7ca7d0111c0a277482f105b4bcb53fb8a4733b1b5f99", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 7073 + }, + { + "path": "yggdrasil_decision_forests/port/tensorflow/tools/build_pip_pkg.sh", + "sha256": "51ccf34157684f69e998692148f7fe53e743a7c5438970e66ca585727b0673ca", + "language": "Shell", + "lines": 229, + "truncated": false, + "block": 9, + "row": 14383 + }, + { + "path": "yggdrasil_decision_forests/port/tensorflow/tools/build_pip_pkg_macos.sh", + "sha256": "000cff837da1ee3f5f93f0cbce53657f31d71a4a6262a5541824d96daa423844", + "language": "Shell", + "lines": 213, + "truncated": false, + "block": 9, + "row": 14375 + }, + { + "path": "yggdrasil_decision_forests/port/tensorflow/ydf_tf/__init__.py", + "sha256": "d647d36f29611e7d4e521d2328158d6d1f8ceb97aaecab593acdb641858e021f", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6780 + }, + { + "path": "yggdrasil_decision_forests/port/tensorflow/ydf_tf/api.py", + "sha256": "4e3953fb5f5d7afb0a0f729053e8a3691f1a2383ed8ed44df82826d3c23cf339", + "language": "Python", + "lines": 1189, + "truncated": false, + "block": 9, + "row": 12379 + }, + { + "path": "yggdrasil_decision_forests/port/tensorflow/ydf_tf/kernel.cc", + "sha256": "794cb8629cfb9de234d498908a5b1b99ab7773fde7f4d7f95300a1b12d0f54e4", + "language": "C++", + "lines": 1699, + "truncated": false, + "block": 9, + "row": 1075 + }, + { + "path": "yggdrasil_decision_forests/port/tensorflow/ydf_tf/op.cc", + "sha256": "e64ddc405d450dfdeb6a8d505d4cc92d42ab46bef24ee55ce03c267a7724a55f", + "language": "C++", + "lines": 269, + "truncated": false, + "block": 9, + "row": 777 + }, + { + "path": "yggdrasil_decision_forests/port/tensorflow/ydf_tf/op.py", + "sha256": "d285b6eb898d50600e14c550d7f5696b017eb2f07047cc520c5a4daeb67350db", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6755 + }, + { + "path": "yggdrasil_decision_forests/port/tensorflow/ydf_tf/op_dynamic.py", + "sha256": "831f8f2529565a6e34463c2a04455859504315839bf281c70eb5eddea19b6178", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 9, + "row": 7333 + }, + { + "path": "yggdrasil_decision_forests/port/tensorflow/ydf_tf/test_utils.py", + "sha256": "0c3c07b69d81e795d4edcce02bfeeade45e96ee16506350c96d725bf0f5a5198", + "language": "Python", + "lines": 552, + "truncated": false, + "block": 9, + "row": 11798 + }, + { + "path": "yggdrasil_decision_forests/port/tensorflow/ydf_tf/tf1_test.py", + "sha256": "48a4330138f66a930119c7e2c2092d55ba476c44f61078fd071bfc8deef12a71", + "language": "Python", + "lines": 342, + "truncated": false, + "block": 9, + "row": 11265 + }, + { + "path": "yggdrasil_decision_forests/port/tensorflow/ydf_tf/tf2_test.py", + "sha256": "6f0359e39574f8e374df537ddb988c92ec24ae01aebf3043d8225e0c5532c47c", + "language": "Python", + "lines": 235, + "truncated": false, + "block": 9, + "row": 10402 + }, + { + "path": "yggdrasil_decision_forests/serving/decision_forest/8bits_numerical_features.cc", + "sha256": "d508695b302af9a7bcdb453d2000c28ef9965a1b927356799b1f014330196dde", + "language": "C++", + "lines": 399, + "truncated": false, + "block": 9, + "row": 861 + }, + { + "path": "yggdrasil_decision_forests/serving/decision_forest/8bits_numerical_features.h", + "sha256": "19a9bb9f702b7c59d755c51087446e671f4a3c35e2c64b9a51bb291f56a8ef2e", + "language": "C/C++", + "lines": 197, + "truncated": false, + "block": 9, + "row": 1649 + }, + { + "path": "yggdrasil_decision_forests/serving/decision_forest/8bits_numerical_features_test.cc", + "sha256": "c19a5c653dd593df59f01a943db5e5373373250f29a0c5240214e923c88f072c", + "language": "C++", + "lines": 252, + "truncated": false, + "block": 9, + "row": 720 + }, + { + "path": "yggdrasil_decision_forests/serving/decision_forest/benchmark_8bits_numerical_features.cc", + "sha256": "86628ad59bf1a4109d8d0f35b29d73fb1d7a83c7aca2b2d33ab79999693dcb5f", + "language": "C++", + "lines": 145, + "truncated": false, + "block": 9, + "row": 569 + }, + { + "path": "yggdrasil_decision_forests/serving/decision_forest/decision_forest.cc", + "sha256": "36206579cefa3d3ce6a7edd81392b5c92a18fa8f73756e09c49ed1cc051c9d71", + "language": "C++", + "lines": 1461, + "truncated": false, + "block": 9, + "row": 1066 + }, + { + "path": "yggdrasil_decision_forests/serving/decision_forest/decision_forest.h", + "sha256": "f2228659af1ccc43aaf9d6f54af7d8fba8423a8cd4de3e64250d271d5ca75fdc", + "language": "C/C++", + "lines": 179, + "truncated": false, + "block": 9, + "row": 1651 + }, + { + "path": "yggdrasil_decision_forests/serving/decision_forest/decision_forest_serving.cc", + "sha256": "3c303cde05db3c09b90d7447476e19c90c4955a413707537f5a0d7557b6b4cbd", + "language": "C++", + "lines": 862, + "truncated": false, + "block": 9, + "row": 1010 + }, + { + "path": "yggdrasil_decision_forests/serving/decision_forest/decision_forest_serving.h", + "sha256": "340e2a72d90c5bd51427bf8e742b6149c4ff187dd236ae98d19a84a4c465b9d1", + "language": "C/C++", + "lines": 643, + "truncated": false, + "block": 9, + "row": 1810 + }, + { + "path": "yggdrasil_decision_forests/serving/decision_forest/decision_forest_test.cc", + "sha256": "ca676990903a586b718613ef8d7b258577ba1a3469c466ccbd9277eeabe2a480", + "language": "C++", + "lines": 861, + "truncated": false, + "block": 9, + "row": 1001 + }, + { + "path": "yggdrasil_decision_forests/serving/decision_forest/quick_scorer_extended.cc", + "sha256": "5fefbb5585ff6ecf253052a2df5b0b74c5fd1c8283c82da27c26c1883edde359", + "language": "C++", + "lines": 983, + "truncated": false, + "block": 9, + "row": 1029 + }, + { + "path": "yggdrasil_decision_forests/serving/decision_forest/quick_scorer_extended.h", + "sha256": "c4690eb4d7ffc6fa1d8b85e2a696b3d9a791c17ae0f022e389edbbd08383a7f0", + "language": "C/C++", + "lines": 743, + "truncated": false, + "block": 9, + "row": 1816 + }, + { + "path": "yggdrasil_decision_forests/serving/decision_forest/quick_scorer_extended_hwy.cc", + "sha256": "91f369f137d745d72630b6e65e57c002cd1ac02576135a4fd349b310d20cc19b", + "language": "C++", + "lines": 384, + "truncated": false, + "block": 9, + "row": 903 + }, + { + "path": "yggdrasil_decision_forests/serving/decision_forest/quick_scorer_extended_internal.h", + "sha256": "baac02363b82a6c29a0b10e19dcc900109c1d7bf7fe430ced6f5955740b9d5c1", + "language": "C/C++", + "lines": 163, + "truncated": false, + "block": 9, + "row": 1626 + }, + { + "path": "yggdrasil_decision_forests/serving/decision_forest/quick_scorer_extended_test.cc", + "sha256": "10f37f666a9dde2d5bf6e5382b60842d3576cd9aa1f3d1b2fc72e492c3e3373d", + "language": "C++", + "lines": 605, + "truncated": false, + "block": 9, + "row": 957 + }, + { + "path": "yggdrasil_decision_forests/serving/decision_forest/register_engines.cc", + "sha256": "5a1c9a93a2dccdc3028157b46064edd7159b08a9b5e299e2de0b252c3eadf602", + "language": "C++", + "lines": 947, + "truncated": false, + "block": 9, + "row": 1014 + }, + { + "path": "yggdrasil_decision_forests/serving/decision_forest/register_engines.h", + "sha256": "c6e78c9b91dc7c38bcb59a6b61e6ff33a6e182cf3fe5a61bab7bd46e9911d3c8", + "language": "C/C++", + "lines": 45, + "truncated": false, + "block": 9, + "row": 1241 + }, + { + "path": "yggdrasil_decision_forests/serving/decision_forest/utils.cc", + "sha256": "5710df939580d363dc474cf7abfa74713258ba91bed64cebc41278639dc3e0fb", + "language": "C++", + "lines": 105, + "truncated": false, + "block": 9, + "row": 453 + }, + { + "path": "yggdrasil_decision_forests/serving/decision_forest/utils.h", + "sha256": "10b6293bdee222727313d8e9b10397fd995ef9b6cf056c9997933aef7b2c556e", + "language": "C/C++", + "lines": 104, + "truncated": false, + "block": 9, + "row": 1487 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/common.cc", + "sha256": "964316f5b9aea3fb0df6f9b86c356f3ecb3cc5eff07ecf3c5b0dc1178370521c", + "language": "C++", + "lines": 700, + "truncated": false, + "block": 9, + "row": 972 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/common.h", + "sha256": "35a59e91487960ecc3311fce5f8eb30a2e347dd1e68a2dbabf54071fecc8e7be", + "language": "C/C++", + "lines": 370, + "truncated": false, + "block": 9, + "row": 1746 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/cpp/cpp_embed.cc", + "sha256": "2d213f892cdf0954df70e1245e517ca6da0230c0527dd816f3b912c19bb6714d", + "language": "C++", + "lines": 63, + "truncated": false, + "block": 9, + "row": 346 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/cpp/cpp_embed.h", + "sha256": "1c51bf7fd3fb37d2979de5c4726cefc19555af28c419a702cc9f8f8654a0a15d", + "language": "C/C++", + "lines": 157, + "truncated": false, + "block": 9, + "row": 1640 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/cpp/cpp_embed_pred_test.cc", + "sha256": "d8a5daf0d87524693bfe6eaf2e03d51ff7288ee54653a37a83d2bb12ae87c6e6", + "language": "C++", + "lines": 472, + "truncated": false, + "block": 9, + "row": 932 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/cpp/cpp_embed_test.cc", + "sha256": "9454a5a2bf63538c7ca1fe10314750228915b916d965336b7fc651b6ae6e3256", + "language": "C++", + "lines": 361, + "truncated": false, + "block": 9, + "row": 821 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/cpp/cpp_emitter.cc", + "sha256": "0c6c71bfdf76ae630c95c8fa8f28967df9669241eb632dd7dcd29f23cb7a3013", + "language": "C++", + "lines": 452, + "truncated": false, + "block": 9, + "row": 897 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/cpp/cpp_emitter.h", + "sha256": "22c5817292559bf95b5c167cf5cff4635cdea837349163b21062418527f525b3", + "language": "C/C++", + "lines": 85, + "truncated": false, + "block": 9, + "row": 1437 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/cpp/cpp_ir.h", + "sha256": "96c905a9c8c6f13de961b293ef686b861e49e943f95bc5157fb19c42f2ed840b", + "language": "C/C++", + "lines": 145, + "truncated": false, + "block": 9, + "row": 1591 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/cpp/cpp_target_lowering.cc", + "sha256": "caabbfb4d22a6fee71ca3e1bd2254ea3fdf322d7d7a4b48d19721ce65c616374", + "language": "C++", + "lines": 850, + "truncated": false, + "block": 9, + "row": 1002 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/cpp/cpp_target_lowering.h", + "sha256": "951e8b3f11281045da578a5edea2e4621995d5679db06a6c8a98dd590d7f6ee6", + "language": "C/C++", + "lines": 113, + "truncated": false, + "block": 9, + "row": 1516 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/cpp/cpp_target_lowering_test.cc", + "sha256": "185c18a8c0c685a9e17ea3e6ee4352c439afeb3b005392f4f0003fdf6ed89bb5", + "language": "C++", + "lines": 162, + "truncated": false, + "block": 9, + "row": 628 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/embed.cc", + "sha256": "30d06bda6664cb8d0cc4ae2de990cf134d64f72adcbd4d1d8be4e38c1625dbe5", + "language": "C++", + "lines": 53, + "truncated": false, + "block": 9, + "row": 308 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/embed.h", + "sha256": "c73234b8844c9d72660480314ad76931d7f122808d8059c9a6876d1c6773bacc", + "language": "C/C++", + "lines": 34, + "truncated": false, + "block": 9, + "row": 1207 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/ir/builder.cc", + "sha256": "a8a7d11a9120693e5b84abf1b378f3c630855d2814889a333f14107bb30d9064", + "language": "C++", + "lines": 631, + "truncated": false, + "block": 9, + "row": 963 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/ir/builder.h", + "sha256": "99ddc369a6e58596b64798affc2010ef1e65c6a860604dc8012677d3f0e79be5", + "language": "C/C++", + "lines": 89, + "truncated": false, + "block": 9, + "row": 1461 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/ir/builder_test.cc", + "sha256": "e076a59ddd8164a86493d2d6a32e95c60b199794c7acccb3c9b7d0c0b917a0fc", + "language": "C++", + "lines": 363, + "truncated": false, + "block": 9, + "row": 816 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/ir/model_ir.h", + "sha256": "5d4d214c6619852c2e3800857730ce9aee0ec091da0cced5417371ecc8e470d5", + "language": "C/C++", + "lines": 133, + "truncated": false, + "block": 9, + "row": 1465 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/java/java_embed.cc", + "sha256": "1c3459b6f3c796162039b574e419be22db38d5b66805e6ee6dd8e34f7763f880", + "language": "C++", + "lines": 1247, + "truncated": false, + "block": 9, + "row": 1050 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/java/java_embed.h", + "sha256": "5b6088faf4cecd01c296b0bda3e28a5e86733673a971267891033d125e4595b7", + "language": "C/C++", + "lines": 91, + "truncated": false, + "block": 9, + "row": 1488 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/java/java_embed_test.cc", + "sha256": "338694f30060f3564b72831aad7d9f280e697203668317207200b57abad04832", + "language": "C++", + "lines": 152, + "truncated": false, + "block": 9, + "row": 585 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/java/model_data_bank.cc", + "sha256": "9904277f7c12d3ef1aa1bca95ff3cccbd0ca1229d2b6cd3dce82415abf3170a4", + "language": "C++", + "lines": 458, + "truncated": false, + "block": 9, + "row": 891 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/java/model_data_bank.h", + "sha256": "991cfba17a5811929b5e80b4b15f133d43f3a7a831379dbc7810dee975ab958d", + "language": "C/C++", + "lines": 173, + "truncated": false, + "block": 9, + "row": 1631 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/java/model_data_bank_test.cc", + "sha256": "7b97a0d187a9cea89bc9ebdbbba7021881b18c3bf7a7cf83e35f9a627a81e95e", + "language": "C++", + "lines": 569, + "truncated": false, + "block": 9, + "row": 943 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/javatests/ydf/JavaPredTest.java", + "sha256": "7c56a1cad2a143069ddc2c76ae542376a98e4f629e24b08abce1f797fd4745eb", + "language": "Java", + "lines": 575, + "truncated": false, + "block": 9, + "row": 2014 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/utils.cc", + "sha256": "27e7e275bd8ab08e7119135970622972e69a3bc064d864652b22ce4b394df56f", + "language": "C++", + "lines": 524, + "truncated": false, + "block": 9, + "row": 849 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/utils.h", + "sha256": "81e1d11daa557b1f75539c56467d58123071d534d74f1301e4ff3b3f89ed2708", + "language": "C/C++", + "lines": 145, + "truncated": false, + "block": 9, + "row": 1609 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/utils_test.cc", + "sha256": "638ebd70eb81459bf5076a68eefa5fdd6cc76d0bd5af6866456fce3fb0af1d80", + "language": "C++", + "lines": 149, + "truncated": false, + "block": 9, + "row": 584 + }, + { + "path": "yggdrasil_decision_forests/serving/embed/write_embed.cc", + "sha256": "d4bcad9c9f4b5fa3ff5259cc254580da551eedb3012bc3598e1bfc2f38109d9c", + "language": "C++", + "lines": 112, + "truncated": false, + "block": 9, + "row": 475 + }, + { + "path": "yggdrasil_decision_forests/serving/example_set.cc", + "sha256": "3e8635099b6f186b7e9118329d9a9cd3321e1093a05584f111fd1b6c813459e9", + "language": "C++", + "lines": 471, + "truncated": false, + "block": 9, + "row": 926 + }, + { + "path": "yggdrasil_decision_forests/serving/example_set.h", + "sha256": "7fd0cc350cd403aca6eaa5cfb38fb56f7460343e5b57a1ad83e99fc2a12fde23", + "language": "C/C++", + "lines": 1643, + "truncated": false, + "block": 9, + "row": 1861 + }, + { + "path": "yggdrasil_decision_forests/serving/example_set_model_wrapper.h", + "sha256": "9e3493ce0ba04772c25212209bb85f0d7ec8ff9fcb435ac2c14d5d41fa42a560", + "language": "C/C++", + "lines": 86, + "truncated": false, + "block": 9, + "row": 1403 + }, + { + "path": "yggdrasil_decision_forests/serving/example_set_test.cc", + "sha256": "24b7a7c180e2d376d4a1bd9272030600c5b11912323702f4469c5dd4b2ae240f", + "language": "C++", + "lines": 762, + "truncated": false, + "block": 9, + "row": 970 + }, + { + "path": "yggdrasil_decision_forests/serving/fast_engine.h", + "sha256": "e5ef32d61cbede927bbbce76de5560078162d9790b1a530449fb2974ba1d4b97", + "language": "C/C++", + "lines": 144, + "truncated": false, + "block": 9, + "row": 1589 + }, + { + "path": "yggdrasil_decision_forests/serving/tf_example.cc", + "sha256": "ec6700402f9edb7988eb02edd09c63fe9662d2a1dfed509eef2e9d1a8afabac0", + "language": "C++", + "lines": 208, + "truncated": false, + "block": 9, + "row": 702 + }, + { + "path": "yggdrasil_decision_forests/serving/tf_example.h", + "sha256": "8c612219be5e2c0405625ce912285baba7abcbe1c07d9a91b43394efaa4d38db", + "language": "C/C++", + "lines": 36, + "truncated": false, + "block": 9, + "row": 1211 + }, + { + "path": "yggdrasil_decision_forests/serving/tf_example_test.cc", + "sha256": "7c69ac35df26ad84f94168ce20ecf6a11fee2eccae477c6da40fb874a1189776", + "language": "C++", + "lines": 309, + "truncated": false, + "block": 9, + "row": 689 + }, + { + "path": "yggdrasil_decision_forests/serving/utils.cc", + "sha256": "4aca76b333134a73dd3b5f2266af497856e8eef8661219539bbe05db70da7ad3", + "language": "C++", + "lines": 347, + "truncated": false, + "block": 9, + "row": 832 + }, + { + "path": "yggdrasil_decision_forests/serving/utils.h", + "sha256": "9ec1d84a7d93a9805464248160ccba42e64e96f1c6bdede0779f46b69c0e277c", + "language": "C/C++", + "lines": 139, + "truncated": false, + "block": 9, + "row": 1582 + }, + { + "path": "yggdrasil_decision_forests/serving/utils_test.cc", + "sha256": "dca26343341138ba7c0817d265e7708d72a691007d817d9ff81f475fb0175f74", + "language": "C++", + "lines": 242, + "truncated": false, + "block": 9, + "row": 707 + }, + { + "path": "yggdrasil_decision_forests/utils/accurate_sum.h", + "sha256": "1c78010af871adcd58b3e656dc3a7c0800fce58d61f9eab1fea025e22b2aea6b", + "language": "C/C++", + "lines": 91, + "truncated": false, + "block": 9, + "row": 1340 + }, + { + "path": "yggdrasil_decision_forests/utils/accurate_sum_test.cc", + "sha256": "2feffd67a41c2bf56d6ff15e30d0025f19c482fcc47ccd207e5635f3d0fd4640", + "language": "C++", + "lines": 147, + "truncated": false, + "block": 9, + "row": 428 + }, + { + "path": "yggdrasil_decision_forests/utils/adaptive_work.cc", + "sha256": "d06cf20e18063c2ce9d25cdc5710eb96939367899435b2117cd2f813180e63bb", + "language": "C++", + "lines": 65, + "truncated": false, + "block": 9, + "row": 324 + }, + { + "path": "yggdrasil_decision_forests/utils/adaptive_work.h", + "sha256": "878e832df1bf5e14a531c4053813b598ddcf2de09b6a1a3fc5c851cec3f8d2c9", + "language": "C/C++", + "lines": 68, + "truncated": false, + "block": 9, + "row": 1345 + }, + { + "path": "yggdrasil_decision_forests/utils/adaptive_work_test.cc", + "sha256": "edef48ca82d41cf8469ddf05d28b6568f82b9813e8970a23245c72699d3411b6", + "language": "C++", + "lines": 47, + "truncated": false, + "block": 9, + "row": 232 + }, + { + "path": "yggdrasil_decision_forests/utils/benchmark/inference.cc", + "sha256": "88f82d681b584c3dbc991fccc2970af9ef4d724e9eda78cd0943eb66a1217e51", + "language": "C++", + "lines": 345, + "truncated": false, + "block": 9, + "row": 829 + }, + { + "path": "yggdrasil_decision_forests/utils/benchmark/inference.h", + "sha256": "da109280cd22b0e281ed8e89d0054a2190c859204f540dbb24c31f96e8ed038f", + "language": "C/C++", + "lines": 85, + "truncated": false, + "block": 9, + "row": 1429 + }, + { + "path": "yggdrasil_decision_forests/utils/benchmark/inference_test.cc", + "sha256": "51243e0403a61742d7a1bacd80b7b91b841651ec2cee653c6d7e326a450c3341", + "language": "C++", + "lines": 119, + "truncated": false, + "block": 9, + "row": 508 + }, + { + "path": "yggdrasil_decision_forests/utils/bitmap.cc", + "sha256": "a3be36a492c3ac21f1d9d9fc5da315c77652dd80d0944fd4fa304b2fd64d566d", + "language": "C++", + "lines": 457, + "truncated": false, + "block": 9, + "row": 873 + }, + { + "path": "yggdrasil_decision_forests/utils/bitmap.h", + "sha256": "8b0e6d94f1e937f186cb7ade952c9aed15ed0e7887168ce390b2904cf8b20e7d", + "language": "C/C++", + "lines": 330, + "truncated": false, + "block": 9, + "row": 1739 + }, + { + "path": "yggdrasil_decision_forests/utils/bitmap_test.cc", + "sha256": "f8a911b45950c00cdd96a10cd489cda2d96258dc6cd52ca194e89030e29bee83", + "language": "C++", + "lines": 507, + "truncated": false, + "block": 9, + "row": 908 + }, + { + "path": "yggdrasil_decision_forests/utils/blob_sequence.cc", + "sha256": "b2df7d4312d897620d7eb1807d9aa8f55b44b40bd78790796c923f59fa79697f", + "language": "C++", + "lines": 154, + "truncated": false, + "block": 9, + "row": 504 + }, + { + "path": "yggdrasil_decision_forests/utils/blob_sequence.h", + "sha256": "4b9f3ecbda2bd451de50e6f530f0bf81ab97ce1cf013b571273934193c65350d", + "language": "C/C++", + "lines": 157, + "truncated": false, + "block": 9, + "row": 1530 + }, + { + "path": "yggdrasil_decision_forests/utils/blob_sequence_test.cc", + "sha256": "6b0f33fdfb37da7c109fe7aecad389350c81e4b0be511244a77fcb5f5910663a", + "language": "C++", + "lines": 114, + "truncated": false, + "block": 9, + "row": 476 + }, + { + "path": "yggdrasil_decision_forests/utils/bytestream.cc", + "sha256": "0ec6345eeb4eae513144767a81cb732d68cfe135dbcfbc8237f523c81e9f9ad3", + "language": "C++", + "lines": 98, + "truncated": false, + "block": 9, + "row": 385 + }, + { + "path": "yggdrasil_decision_forests/utils/bytestream.h", + "sha256": "40c4833ef9a7b401fd85ea509604948a1327c2767f25e24f3b7b3d00fc5a3402", + "language": "C/C++", + "lines": 133, + "truncated": false, + "block": 9, + "row": 1496 + }, + { + "path": "yggdrasil_decision_forests/utils/bytestream_test.cc", + "sha256": "c8efabbf9241cd43c0f6000c785161b069ec00d357968b6620ba2d040474a4ba", + "language": "C++", + "lines": 45, + "truncated": false, + "block": 9, + "row": 230 + }, + { + "path": "yggdrasil_decision_forests/utils/cast.h", + "sha256": "2e54587c9e96a48b954dc0a1138127bb06f9574b8e1561f68522c38adc7adc4b", + "language": "C/C++", + "lines": 60, + "truncated": false, + "block": 9, + "row": 1326 + }, + { + "path": "yggdrasil_decision_forests/utils/circular_buffer.h", + "sha256": "9885de099ac7cb57d350dd4928d2023671655516dda4a35fd21d81571abe427d", + "language": "C/C++", + "lines": 148, + "truncated": false, + "block": 9, + "row": 1458 + }, + { + "path": "yggdrasil_decision_forests/utils/circular_buffer_test.cc", + "sha256": "a2236e95e64c4fb932fc85bfc78b66ac3b20a97a7c1ac59e2630dcf3fd4b8259", + "language": "C++", + "lines": 105, + "truncated": false, + "block": 9, + "row": 352 + }, + { + "path": "yggdrasil_decision_forests/utils/compatibility.h", + "sha256": "8ac89864d0aed338a96e55946251994a55c28247d7149e2efdc1899a984fee9b", + "language": "C/C++", + "lines": 52, + "truncated": false, + "block": 9, + "row": 1231 + }, + { + "path": "yggdrasil_decision_forests/utils/concurrency.cc", + "sha256": "f88a339ddd3a633a0e5f56a7c5241edb9eb22b66a8c2eade023e079d2ed927ed", + "language": "C++", + "lines": 126, + "truncated": false, + "block": 9, + "row": 501 + }, + { + "path": "yggdrasil_decision_forests/utils/concurrency.h", + "sha256": "f2466ff234da9fe814f019d4a15ad87ae3629874e7494b932c9975ffe2dcb65b", + "language": "C/C++", + "lines": 220, + "truncated": false, + "block": 9, + "row": 1671 + }, + { + "path": "yggdrasil_decision_forests/utils/concurrency_channel.h", + "sha256": "1b81150b52f586f03958b6e4ff4304ef3ac2ef728afda7b2282b7c8bf5da4dcb", + "language": "C/C++", + "lines": 107, + "truncated": false, + "block": 9, + "row": 1438 + }, + { + "path": "yggdrasil_decision_forests/utils/concurrency_default.cc", + "sha256": "fe61348995d5cc8141ae0bb7a5d6a67681d8dd73bad38a065be8c3e66d3edb75", + "language": "C++", + "lines": 72, + "truncated": false, + "block": 9, + "row": 267 + }, + { + "path": "yggdrasil_decision_forests/utils/concurrency_default.h", + "sha256": "99927c5933261c60ff431a0dafbdbd1f798699011f1733ac4eb0bc0e9f300c34", + "language": "C/C++", + "lines": 88, + "truncated": false, + "block": 9, + "row": 1365 + }, + { + "path": "yggdrasil_decision_forests/utils/concurrency_streamprocessor.h", + "sha256": "6e6fcb88b8c34ed5c5b0f29eaab93ff93fb19c7ad35a7cc414ed586f3e88e88e", + "language": "C/C++", + "lines": 209, + "truncated": false, + "block": 9, + "row": 1622 + }, + { + "path": "yggdrasil_decision_forests/utils/concurrency_test.cc", + "sha256": "4776f98645c8abaea30010dbbd1fcc1580498821e9ad8eaefb5f4ab91135f98d", + "language": "C++", + "lines": 340, + "truncated": false, + "block": 9, + "row": 757 + }, + { + "path": "yggdrasil_decision_forests/utils/csv.cc", + "sha256": "60d747982e55272eb40b5be4fd8a695026cadfc242daad158811fedb628da769", + "language": "C++", + "lines": 254, + "truncated": false, + "block": 9, + "row": 640 + }, + { + "path": "yggdrasil_decision_forests/utils/csv.h", + "sha256": "60ad5db2692514b42c3392bd6e0433cd7b149fac8d732bf7a0f6af9c5286c5f1", + "language": "C/C++", + "lines": 163, + "truncated": false, + "block": 9, + "row": 1568 + }, + { + "path": "yggdrasil_decision_forests/utils/csv_test.cc", + "sha256": "2c2a2ec59cf60165fd3b89af17dbd9dec48a02e30e613fdde4f4f1fead51d024", + "language": "C++", + "lines": 264, + "truncated": false, + "block": 9, + "row": 667 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/core.cc", + "sha256": "1164313869aaa919014b78ab7f6136256f6349f25a73cead3b1ad9993cbe3a59", + "language": "C++", + "lines": 66, + "truncated": false, + "block": 9, + "row": 315 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/core.h", + "sha256": "0b5195aef3cefea98d2ca2a0477f739844d40d0e1cc770995b0921034a608564", + "language": "C/C++", + "lines": 258, + "truncated": false, + "block": 9, + "row": 1710 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/distribute.cc", + "sha256": "dbfe9205de173e5e6d1cf9555289f5b1cef4a8f3be26b6ab102eb79616f8991d", + "language": "C++", + "lines": 49, + "truncated": false, + "block": 9, + "row": 274 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/distribute.h", + "sha256": "cbc37b14291af1d41eaa19be5318f45d463f1df063695ef822ec274c8d10c3b8", + "language": "C/C++", + "lines": 100, + "truncated": false, + "block": 9, + "row": 1493 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/distribute_test.cc", + "sha256": "0155eccc9abf2bd51b6242d3dd9159b9aa682dcc23b30d683a9d8f448aa52199", + "language": "C++", + "lines": 106, + "truncated": false, + "block": 9, + "row": 434 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/implementations/grpc/grpc_common.cc", + "sha256": "5bd884fe2d871f530dae9b1b902ccd62c0ceb25beb83d8ab8007b3b61a229b79", + "language": "C++", + "lines": 55, + "truncated": false, + "block": 9, + "row": 259 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/implementations/grpc/grpc_common.h", + "sha256": "ed54747a3c7c2f1a141c3d24ba7791e4f0a391e704a0802a807d4073072ba85b", + "language": "C/C++", + "lines": 38, + "truncated": false, + "block": 9, + "row": 1200 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/implementations/grpc/grpc_common_test.cc", + "sha256": "81c72631ac93ca4d50d130e32717186446f887c31127fb80c333c394711a677e", + "language": "C++", + "lines": 44, + "truncated": false, + "block": 9, + "row": 245 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/implementations/grpc/grpc_manager.cc", + "sha256": "dedf3042873b1f65d01086907a07b2c9004d743f519c5e026c7e093396464a70", + "language": "C++", + "lines": 731, + "truncated": false, + "block": 9, + "row": 955 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/implementations/grpc/grpc_manager.h", + "sha256": "fe0a7a7d6ee8caf8864ba9dd3e8249f6714353cf7af66c404b0ec266bbb3d2ee", + "language": "C/C++", + "lines": 283, + "truncated": false, + "block": 9, + "row": 1709 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/implementations/grpc/grpc_test.cc", + "sha256": "7c852b02ce853e6e945503190e025a78d424a87940ab26ebcc00399bad1b20e1", + "language": "C++", + "lines": 232, + "truncated": false, + "block": 9, + "row": 657 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/implementations/grpc/grpc_worker.cc", + "sha256": "58e1561d621913bf7f384bebd57a7f9970193cc03a0874d5c47a1c805005eb8e", + "language": "C++", + "lines": 430, + "truncated": false, + "block": 9, + "row": 870 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/implementations/grpc/grpc_worker.h", + "sha256": "4493f467d646acd7518003b43b737adfacc3e510af85051411d60657bb27c43b", + "language": "C/C++", + "lines": 233, + "truncated": false, + "block": 9, + "row": 1689 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/implementations/grpc/grpc_worker_main.cc", + "sha256": "737f60271d188e7c5a63ca198cffcfbdb577b042c8faa9ca8f20ed8491aa47cf", + "language": "C++", + "lines": 46, + "truncated": false, + "block": 9, + "row": 236 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/implementations/multi_thread/multi_thread.cc", + "sha256": "e980196b6b1bb95474e4ee9e9081ecb5896421f24361d9caab50d491506a3db9", + "language": "C++", + "lines": 219, + "truncated": false, + "block": 9, + "row": 652 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/implementations/multi_thread/multi_thread.h", + "sha256": "be61597299139b319d228d0045181c28d0d20083079dc0a6a56cd6fda3b012fb", + "language": "C/C++", + "lines": 137, + "truncated": false, + "block": 9, + "row": 1550 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/test_utils.cc", + "sha256": "097b81230f10e981af701982e984889237d5cc904aa9ac433e90a587d30621ea", + "language": "C++", + "lines": 257, + "truncated": false, + "block": 9, + "row": 662 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/test_utils.h", + "sha256": "4c321424cb451e852eb0023073be85e818e07ab3a94c0c3cd00e40a79fbd003d", + "language": "C/C++", + "lines": 97, + "truncated": false, + "block": 9, + "row": 1475 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/toy_worker.cc", + "sha256": "d5a782e85ec01ec9d51b1b3fa009a20b288f3e67b30d2f0b94b3127a3120ddc9", + "language": "C++", + "lines": 25, + "truncated": false, + "block": 9, + "row": 184 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/toy_worker.h", + "sha256": "fb13bf397c8e4465d6482f8e9fe5b6af4d1aa3f2738756c819331e21473be4bf", + "language": "C/C++", + "lines": 155, + "truncated": false, + "block": 9, + "row": 1585 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/utils.cc", + "sha256": "7d0cc2c73ccd6c48ad7aa3934c18d2a3b74daa712bc908d16775968e752864f5", + "language": "C++", + "lines": 38, + "truncated": false, + "block": 9, + "row": 192 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute/utils.h", + "sha256": "fe2acbcee56843129b074635b763fd11298555bc1c5c6a3a567dca68f8122a60", + "language": "C/C++", + "lines": 40, + "truncated": false, + "block": 9, + "row": 1188 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute_cli/common.cc", + "sha256": "e3b633e6e1bc4a80175293afe0c355e08522c6f20cd8c0951be9187b09167ded", + "language": "C++", + "lines": 63, + "truncated": false, + "block": 9, + "row": 295 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute_cli/common.h", + "sha256": "638ae1537af0e710270f7178161d2fddbe790b4d71ec66ea00562b29c62570aa", + "language": "C/C++", + "lines": 47, + "truncated": false, + "block": 9, + "row": 1254 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute_cli/distribute_cli.cc", + "sha256": "5a5037983fa6e9051670a33e777506df96551ae4a7cf35676410ae487b9a99d4", + "language": "C++", + "lines": 219, + "truncated": false, + "block": 9, + "row": 665 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute_cli/distribute_cli.h", + "sha256": "6f28d758e98f0d7903ba05e25e78359c6a6ed5f684e97ef9be1979072586e427", + "language": "C/C++", + "lines": 132, + "truncated": false, + "block": 9, + "row": 1536 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute_cli/distribute_cli_test.cc", + "sha256": "6190ba482c6fafadadeff60c91f148daf904ac1e063130f16229f24aa1e62cb2", + "language": "C++", + "lines": 63, + "truncated": false, + "block": 9, + "row": 312 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute_cli/distribute_cli_worker.cc", + "sha256": "c5dd785c88e1b2e2a84c08926c537accaa2acc607660b922df196313d45f8fd8", + "language": "C++", + "lines": 303, + "truncated": false, + "block": 9, + "row": 746 + }, + { + "path": "yggdrasil_decision_forests/utils/distribute_cli/distribute_cli_worker.h", + "sha256": "c9a10081da13bc1e7ae5b1121ebc8ab5257c5ed9eb923fea5d3365ac8e9e6791", + "language": "C/C++", + "lines": 68, + "truncated": false, + "block": 9, + "row": 1323 + }, + { + "path": "yggdrasil_decision_forests/utils/distribution.cc", + "sha256": "7e025319ce3c9357d6a10b6e8ad51093069dbee427588f471dab60278004c094", + "language": "C++", + "lines": 121, + "truncated": false, + "block": 9, + "row": 437 + }, + { + "path": "yggdrasil_decision_forests/utils/distribution.h", + "sha256": "fb37d3652dee4c36977de674657af322946f4346bcf7cc02f15e37e751c06bbe", + "language": "C/C++", + "lines": 1023, + "truncated": false, + "block": 9, + "row": 1820 + }, + { + "path": "yggdrasil_decision_forests/utils/distribution_test.cc", + "sha256": "d9289f4b5c602b3c9d60f02a251c3c494ffe2102ad9c76d8cd6562fab05efa75", + "language": "C++", + "lines": 688, + "truncated": false, + "block": 9, + "row": 930 + }, + { + "path": "yggdrasil_decision_forests/utils/documentation.cc", + "sha256": "8131b59595113b85bf54a2c9a6817f063793f7e90b16553f4d0c9f3371ce9666", + "language": "C++", + "lines": 19, + "truncated": false, + "block": 9, + "row": 175 + }, + { + "path": "yggdrasil_decision_forests/utils/documentation.h", + "sha256": "97c7191c39b8dfc7b769d9fcaf2813f9b93010432914c5bbdf3f4edaccb3c574", + "language": "C/C++", + "lines": 45, + "truncated": false, + "block": 9, + "row": 1235 + }, + { + "path": "yggdrasil_decision_forests/utils/endian.h", + "sha256": "4835634bfacc249b37eeda1a7c39545c07dceea7cdf54f7332bc4179f7bc3740", + "language": "C/C++", + "lines": 23, + "truncated": false, + "block": 9, + "row": 1152 + }, + { + "path": "yggdrasil_decision_forests/utils/endian_default.h", + "sha256": "eb6ac3cec7fbceeb528133d75557026e1ca578086a0ef68f1eb65e1b801d7589", + "language": "C/C++", + "lines": 90, + "truncated": false, + "block": 9, + "row": 1415 + }, + { + "path": "yggdrasil_decision_forests/utils/endian_google.h", + "sha256": "fc3af60f6bc9f90fbeed2794ab6375da785f422cd46db113aeff674597aa9320", + "language": "C/C++", + "lines": 50, + "truncated": false, + "block": 9, + "row": 1229 + }, + { + "path": "yggdrasil_decision_forests/utils/endian_test.cc", + "sha256": "06c5d27109f5bf8cc248f5ff58588a3f735a632e06d685ce67e9cfa51da2d889", + "language": "C++", + "lines": 68, + "truncated": false, + "block": 9, + "row": 304 + }, + { + "path": "yggdrasil_decision_forests/utils/evaluation.cc", + "sha256": "6f06b6e24eeb9ba6aaf076be2332ce6f86ce83d6964f55424828b20476741212", + "language": "C++", + "lines": 348, + "truncated": false, + "block": 9, + "row": 851 + }, + { + "path": "yggdrasil_decision_forests/utils/evaluation.h", + "sha256": "e55f6a7c286ddd62f64eded5d79c7b337577668c37386cd9a70e110cd282de43", + "language": "C/C++", + "lines": 112, + "truncated": false, + "block": 9, + "row": 1537 + }, + { + "path": "yggdrasil_decision_forests/utils/evaluation_test.cc", + "sha256": "3cb359b61149049ee5498317266cedda47e76169dec396f2880f71c590c04e44", + "language": "C++", + "lines": 429, + "truncated": false, + "block": 9, + "row": 859 + }, + { + "path": "yggdrasil_decision_forests/utils/feature_importance.cc", + "sha256": "8d7f5866a5dfcd5a162b2aa7a4ccb8d19db6efc5c8314c005c04a58c4d907d08", + "language": "C++", + "lines": 498, + "truncated": false, + "block": 9, + "row": 920 + }, + { + "path": "yggdrasil_decision_forests/utils/feature_importance.h", + "sha256": "e66c357091b82053f4e9dd50c587fd0b3df73caced3914e39bbed1e355890803", + "language": "C/C++", + "lines": 113, + "truncated": false, + "block": 9, + "row": 1519 + }, + { + "path": "yggdrasil_decision_forests/utils/filesystem.cc", + "sha256": "fc46762615ac1ad8fca7d2f10b558abe9ce8205c36481c8eb1073cbbb2062f23", + "language": "C++", + "lines": 56, + "truncated": false, + "block": 9, + "row": 269 + }, + { + "path": "yggdrasil_decision_forests/utils/filesystem.h", + "sha256": "a94e963577f4a79ed6ca531ecfe6a3b6f41f3a7396541fb03a12406aaed25b7c", + "language": "C/C++", + "lines": 87, + "truncated": false, + "block": 9, + "row": 1370 + }, + { + "path": "yggdrasil_decision_forests/utils/filesystem_default.cc", + "sha256": "aa9c01db77d0a6313410d1c5cea0eef2f85122c57bfbc0eaf2e1d396591cf91a", + "language": "C++", + "lines": 451, + "truncated": false, + "block": 9, + "row": 863 + }, + { + "path": "yggdrasil_decision_forests/utils/filesystem_default.h", + "sha256": "abff00601045e64573dd9c8db4e82baa610c62dd20daa4e8cdb9f3b5ac29cb34", + "language": "C/C++", + "lines": 216, + "truncated": false, + "block": 9, + "row": 1645 + }, + { + "path": "yggdrasil_decision_forests/utils/filesystem_default_gcs.cc", + "sha256": "b9693919031a75b4fb7182f1bf323c8d2293b26e7335a1dafc1763ca8221e1c5", + "language": "C++", + "lines": 282, + "truncated": false, + "block": 9, + "row": 743 + }, + { + "path": "yggdrasil_decision_forests/utils/filesystem_default_gcs_test.cc", + "sha256": "41ba671cd4ef1be5d9f81198a339387103aa26ad8e6435ca6e09a176e49f2cad", + "language": "C++", + "lines": 237, + "truncated": false, + "block": 9, + "row": 672 + }, + { + "path": "yggdrasil_decision_forests/utils/filesystem_interface.h", + "sha256": "072b016de0eb1c3331a126db64e7af1ec2457b4e28df0a43c34765a46ac09895", + "language": "C/C++", + "lines": 66, + "truncated": false, + "block": 9, + "row": 1335 + }, + { + "path": "yggdrasil_decision_forests/utils/filesystem_tensorflow.cc", + "sha256": "db76eb9c3449eca3d4c15b0149459f9e977127ced82902fb406b92df9f0d7aa0", + "language": "C++", + "lines": 122, + "truncated": false, + "block": 9, + "row": 485 + }, + { + "path": "yggdrasil_decision_forests/utils/filesystem_tensorflow.h", + "sha256": "4e928da31d3cfea1ae7c214d317422ed48fe155979319263db0ad0106af97caa", + "language": "C/C++", + "lines": 182, + "truncated": false, + "block": 9, + "row": 1621 + }, + { + "path": "yggdrasil_decision_forests/utils/filesystem_tensorflow_impl.cc", + "sha256": "06c2563931b25d226f37adf034b6bc049b729557e278dc3da5c29c80da314ee7", + "language": "C++", + "lines": 323, + "truncated": false, + "block": 9, + "row": 765 + }, + { + "path": "yggdrasil_decision_forests/utils/filesystem_tensorflow_interface.cc", + "sha256": "d9d93a2cbe6dbba38faef798a75cc5fdaca1d7d0092f13a2e37cfde9d31ea12f", + "language": "C++", + "lines": 39, + "truncated": false, + "block": 9, + "row": 211 + }, + { + "path": "yggdrasil_decision_forests/utils/filesystem_tensorflow_interface.h", + "sha256": "e1084d2d8908bde49657f77d79e0f6ebeaa3af3d3ee3716964dc5f86e7f6b038", + "language": "C/C++", + "lines": 33, + "truncated": false, + "block": 9, + "row": 1184 + }, + { + "path": "yggdrasil_decision_forests/utils/filesystem_test.cc", + "sha256": "6dcd0334bd016951725debde7bea9ba31eecebb25a8088e115111d24db3c8e54", + "language": "C++", + "lines": 201, + "truncated": false, + "block": 9, + "row": 649 + }, + { + "path": "yggdrasil_decision_forests/utils/fold_generator.cc", + "sha256": "5a37ee832945e55fec9830931c965150e2338b47c78715f7f73dce9dea630a6d", + "language": "C++", + "lines": 417, + "truncated": false, + "block": 9, + "row": 889 + }, + { + "path": "yggdrasil_decision_forests/utils/fold_generator.h", + "sha256": "28a86eaf3e9b77535735b9fd8a8f1c09397b7576fef00bac9f1280cea4cecd0e", + "language": "C/C++", + "lines": 103, + "truncated": false, + "block": 9, + "row": 1520 + }, + { + "path": "yggdrasil_decision_forests/utils/fold_generator_test.cc", + "sha256": "69f61780dff6f675b8dc58055ed77aea1bd275104217d8a36ed4894bd8fae466", + "language": "C++", + "lines": 266, + "truncated": false, + "block": 9, + "row": 740 + }, + { + "path": "yggdrasil_decision_forests/utils/hash.h", + "sha256": "c1a8e30d7c9048ff99f7d5f0cb1fc52b7cf265c102405e83dc008f5e27045dbe", + "language": "C/C++", + "lines": 51, + "truncated": false, + "block": 9, + "row": 1236 + }, + { + "path": "yggdrasil_decision_forests/utils/histogram.h", + "sha256": "eb170cc78685b94c8e418365d46ae2c2963ae14ef74d635a564124b5e7ce4379", + "language": "C/C++", + "lines": 256, + "truncated": false, + "block": 9, + "row": 1668 + }, + { + "path": "yggdrasil_decision_forests/utils/histogram_test.cc", + "sha256": "9234a2ea675f98fc113bbe3d4ec1dc12c615373976e1026867d2e58bd72db33e", + "language": "C++", + "lines": 191, + "truncated": false, + "block": 9, + "row": 590 + }, + { + "path": "yggdrasil_decision_forests/utils/html.cc", + "sha256": "b0ecf3fe994a408518e5794a37aa3687a94d70767b0ce9afab0b7caf64b9ab89", + "language": "C++", + "lines": 93, + "truncated": false, + "block": 9, + "row": 356 + }, + { + "path": "yggdrasil_decision_forests/utils/html.h", + "sha256": "c4dbce15e98031467f33475f743fdbd45e80f05e493bafab312c599fe1aacdb9", + "language": "C/C++", + "lines": 340, + "truncated": false, + "block": 9, + "row": 1667 + }, + { + "path": "yggdrasil_decision_forests/utils/html_content.cc", + "sha256": "7f329dd6609152badc3947e4234cdf6f0d2aaa5b1ed135e44a5e5224706ab48e", + "language": "C++", + "lines": 133, + "truncated": false, + "block": 9, + "row": 432 + }, + { + "path": "yggdrasil_decision_forests/utils/html_content.h", + "sha256": "862afaab6a61a619133c66da016cd495bdc098ba60a2ae02e99a37f48d88304b", + "language": "C/C++", + "lines": 55, + "truncated": false, + "block": 9, + "row": 1234 + }, + { + "path": "yggdrasil_decision_forests/utils/html_content_test.cc", + "sha256": "8ba5ad0093d3b27915db5c1f1c439e2bc20fdc06fb1b01592db5daa8aecdb162", + "language": "C++", + "lines": 38, + "truncated": false, + "block": 9, + "row": 205 + }, + { + "path": "yggdrasil_decision_forests/utils/html_test.cc", + "sha256": "c44e62b0aae2f837ffc6c933e82ccecfb9f9cb55b82635457c14d1aae81bb635", + "language": "C++", + "lines": 81, + "truncated": false, + "block": 9, + "row": 351 + }, + { + "path": "yggdrasil_decision_forests/utils/hyper_parameters.cc", + "sha256": "bd68022f603ff2e8d80068fb655c9b5f6a8c091d045bc4b5b093e9ec493ed87b", + "language": "C++", + "lines": 102, + "truncated": false, + "block": 9, + "row": 451 + }, + { + "path": "yggdrasil_decision_forests/utils/hyper_parameters.h", + "sha256": "f6cc88966acc82abc632afa49d2e736be250022a85b3fa90b75b096eba6dc6ae", + "language": "C/C++", + "lines": 69, + "truncated": false, + "block": 9, + "row": 1347 + }, + { + "path": "yggdrasil_decision_forests/utils/hyper_parameters_test.cc", + "sha256": "4acc214afc38c9d4382e09c9c617580dc1a7bb58e2deef2ffadda072fd0850ef", + "language": "C++", + "lines": 73, + "truncated": false, + "block": 9, + "row": 334 + }, + { + "path": "yggdrasil_decision_forests/utils/logging.h", + "sha256": "2790a9a697529353f588a2e427189bc64073596d49403a8baf0e6ca882dd9d6c", + "language": "C/C++", + "lines": 25, + "truncated": false, + "block": 9, + "row": 1156 + }, + { + "path": "yggdrasil_decision_forests/utils/logging_default.cc", + "sha256": "3330ca434bf8cec2b3ff2434690ea1bc1c87113a03b0cf1cace7509af1f0b4f5", + "language": "C++", + "lines": 52, + "truncated": false, + "block": 9, + "row": 254 + }, + { + "path": "yggdrasil_decision_forests/utils/logging_default.h", + "sha256": "d5a54c91b1092667c59340f50a49e8ed6ff3a9b99f5382e11bcf3b5021cc924f", + "language": "C/C++", + "lines": 66, + "truncated": false, + "block": 9, + "row": 1308 + }, + { + "path": "yggdrasil_decision_forests/utils/logging_test.cc", + "sha256": "b6aa41f2b084746310cfb7443ad3053ada8517711b45cf01801026f60e8f0567", + "language": "C++", + "lines": 30, + "truncated": false, + "block": 9, + "row": 186 + }, + { + "path": "yggdrasil_decision_forests/utils/math.cc", + "sha256": "7f3fb3b8d5413df67e39c0fcb1a16cc6ebd6e3bd219ea91b955f9044c2f0450a", + "language": "C++", + "lines": 97, + "truncated": false, + "block": 9, + "row": 396 + }, + { + "path": "yggdrasil_decision_forests/utils/math.h", + "sha256": "bcecb021bb81059273e271c5ac86bfba9d92eee3d31a970cbecd755aeab14735", + "language": "C/C++", + "lines": 47, + "truncated": false, + "block": 9, + "row": 1225 + }, + { + "path": "yggdrasil_decision_forests/utils/math_test.cc", + "sha256": "23b8f21036c35b435ebe397bc4ff1a46de4f661412bd03dbff4e38baf114892a", + "language": "C++", + "lines": 97, + "truncated": false, + "block": 9, + "row": 345 + }, + { + "path": "yggdrasil_decision_forests/utils/model_analysis.cc", + "sha256": "6bf6809eaa6def4f21c274041fae7c0f398b05f1e470e521055028f98838fc5e", + "language": "C++", + "lines": 1621, + "truncated": false, + "block": 9, + "row": 1071 + }, + { + "path": "yggdrasil_decision_forests/utils/model_analysis.h", + "sha256": "41e33cbfd9154cf797dae7f6ea3abe6c62d056b5c5b189ad3fe5127c5a8d6a9c", + "language": "C/C++", + "lines": 118, + "truncated": false, + "block": 9, + "row": 1592 + }, + { + "path": "yggdrasil_decision_forests/utils/model_analysis_test.cc", + "sha256": "959b9e622acb9f77b589db8871326f60429bdd4053c6301411a04e2740683043", + "language": "C++", + "lines": 647, + "truncated": false, + "block": 9, + "row": 967 + }, + { + "path": "yggdrasil_decision_forests/utils/own_or_borrow.h", + "sha256": "df8f94e0fe6e9606fc42594c0cb8814bc79ae51ecfd5aba8f4562dc4f1d7b2d8", + "language": "C/C++", + "lines": 80, + "truncated": false, + "block": 9, + "row": 1334 + }, + { + "path": "yggdrasil_decision_forests/utils/own_or_borrow_test.cc", + "sha256": "0969632ddf293271fc4d54680dc04d72889480ab855781c9acd215e6d0bfea66", + "language": "C++", + "lines": 67, + "truncated": false, + "block": 9, + "row": 263 + }, + { + "path": "yggdrasil_decision_forests/utils/partial_dependence_plot.cc", + "sha256": "d4a3afff365689a387bfd07e30652e7dfc2a449c76f271083c6ec14f07e4a6f1", + "language": "C++", + "lines": 752, + "truncated": false, + "block": 9, + "row": 985 + }, + { + "path": "yggdrasil_decision_forests/utils/partial_dependence_plot.h", + "sha256": "afeec288404e39beee4e710c63467b1d177dd757f3e5a8acdc5b97c812363e20", + "language": "C/C++", + "lines": 147, + "truncated": false, + "block": 9, + "row": 1637 + }, + { + "path": "yggdrasil_decision_forests/utils/partial_dependence_plot_test.cc", + "sha256": "de3f280257908549baf6882607624a11c9f67f4d8571ad87066000bf1dc82a39", + "language": "C++", + "lines": 1482, + "truncated": false, + "block": 9, + "row": 1060 + }, + { + "path": "yggdrasil_decision_forests/utils/plot.cc", + "sha256": "c8eee130f49b7fcd411534ad45bb1564ce696ed5f3f1633fce41ce6167dda127", + "language": "C++", + "lines": 559, + "truncated": false, + "block": 9, + "row": 894 + }, + { + "path": "yggdrasil_decision_forests/utils/plot.h", + "sha256": "82f81eab4a1021202600e42c8f9a65eca253d71e2f55ec19dd3bd536c23d1131", + "language": "C/C++", + "lines": 317, + "truncated": false, + "block": 9, + "row": 1691 + }, + { + "path": "yggdrasil_decision_forests/utils/plot_test.cc", + "sha256": "beb6d8c65abc92e0f7161bb14c688df06a61b8b65c75a354a094bd923a01808b", + "language": "C++", + "lines": 210, + "truncated": false, + "block": 9, + "row": 602 + }, + { + "path": "yggdrasil_decision_forests/utils/protobuf.h", + "sha256": "97b234a0312130313a9bac5d28c8b98b6b822300917d59759c14b9b01f2cfce3", + "language": "C/C++", + "lines": 135, + "truncated": false, + "block": 9, + "row": 1515 + }, + { + "path": "yggdrasil_decision_forests/utils/protobuf_test.cc", + "sha256": "e1ae189d39d9ec300e668b70566ef2f54010d7a3f027f830ca227afdd6b74073", + "language": "C++", + "lines": 45, + "truncated": false, + "block": 9, + "row": 215 + }, + { + "path": "yggdrasil_decision_forests/utils/random.h", + "sha256": "8eefe2dbe2ad2756d4559851d136b803eabb3f009bbba86c35f7e60244d0c6a4", + "language": "C/C++", + "lines": 46, + "truncated": false, + "block": 9, + "row": 1219 + }, + { + "path": "yggdrasil_decision_forests/utils/regex.cc", + "sha256": "182da5b5344d3cabaf19ef967dc06717aa3410fbb57039cb0fbc5ebb599b9494", + "language": "C++", + "lines": 47, + "truncated": false, + "block": 9, + "row": 223 + }, + { + "path": "yggdrasil_decision_forests/utils/regex.h", + "sha256": "a39e6f8cac2edb9e2603857072744ef3e9c4c000f146182a18123a692055dfdb", + "language": "C/C++", + "lines": 39, + "truncated": false, + "block": 9, + "row": 1198 + }, + { + "path": "yggdrasil_decision_forests/utils/regex_test.cc", + "sha256": "6d4e56e206198fe24ef7e594f6f036f8767dce61ffb674441edfc5a65585fdf0", + "language": "C++", + "lines": 32, + "truncated": false, + "block": 9, + "row": 187 + }, + { + "path": "yggdrasil_decision_forests/utils/registration.cc", + "sha256": "b3497a079c1ffda1df3c4dd0314094c6fecd60e1a8d799b941b425f232e949f6", + "language": "C++", + "lines": 26, + "truncated": false, + "block": 9, + "row": 181 + }, + { + "path": "yggdrasil_decision_forests/utils/registration.h", + "sha256": "de88ac2e73a729545f0a4b09bbe6ec27cd6354c9b3b4343c7474798def408e0f", + "language": "C/C++", + "lines": 198, + "truncated": false, + "block": 9, + "row": 1650 + }, + { + "path": "yggdrasil_decision_forests/utils/registration_test.cc", + "sha256": "918f3401c3207ae3b55e27960ea101428400811b905d87e22a595e36fe78218d", + "language": "C++", + "lines": 190, + "truncated": false, + "block": 9, + "row": 598 + }, + { + "path": "yggdrasil_decision_forests/utils/reliability_diagram.cc", + "sha256": "0589351eeeeb3a362447c26c11b86c4bb72010a10bf20b90a58af4dab78c42b3", + "language": "C++", + "lines": 96, + "truncated": false, + "block": 9, + "row": 364 + }, + { + "path": "yggdrasil_decision_forests/utils/reliability_diagram.h", + "sha256": "fe5a5941dc49b9dd2ff4b59c94ba473c3ea20faa513506f0f5d5cf75f6d4cfab", + "language": "C/C++", + "lines": 83, + "truncated": false, + "block": 9, + "row": 1436 + }, + { + "path": "yggdrasil_decision_forests/utils/reliability_diagram_test.cc", + "sha256": "8b274376f15de3c9d1acbd7c11d424648b06f4eb89c34f5d066cfcf9daf827d7", + "language": "C++", + "lines": 228, + "truncated": false, + "block": 9, + "row": 682 + }, + { + "path": "yggdrasil_decision_forests/utils/shap.cc", + "sha256": "d4f6c2cbad8d98cea2d9b089e710254ee9e40b00997dc794aba4225b220ea6ff", + "language": "C++", + "lines": 534, + "truncated": false, + "block": 9, + "row": 928 + }, + { + "path": "yggdrasil_decision_forests/utils/shap.h", + "sha256": "e6c0c254f0dec2c7ce0556f5276a9229717b12e57e8f947429e725ad1bfbce48", + "language": "C/C++", + "lines": 162, + "truncated": false, + "block": 9, + "row": 1606 + }, + { + "path": "yggdrasil_decision_forests/utils/shap_test.cc", + "sha256": "82aa93774d61e9ef2db6c63546fd114cb295b1782741f89929c5c19ed72fb0e8", + "language": "C++", + "lines": 1059, + "truncated": false, + "block": 9, + "row": 1025 + }, + { + "path": "yggdrasil_decision_forests/utils/sharded_io.cc", + "sha256": "0ea06ea05542f4765e6854e0bc28286ec65d498f3eb1b4090a16f76a9a7714e3", + "language": "C++", + "lines": 88, + "truncated": false, + "block": 9, + "row": 382 + }, + { + "path": "yggdrasil_decision_forests/utils/sharded_io.h", + "sha256": "0d41bab7afa3363593b2238846edded21ea7854ddde9d96270fd60b52dad9373", + "language": "C/C++", + "lines": 216, + "truncated": false, + "block": 9, + "row": 1636 + }, + { + "path": "yggdrasil_decision_forests/utils/sharded_io_blob_sequence.h", + "sha256": "743d53c40b44013dd522179a27e1f55aa3a151502ffe71530ec0888713eb5222", + "language": "C/C++", + "lines": 135, + "truncated": false, + "block": 9, + "row": 1533 + }, + { + "path": "yggdrasil_decision_forests/utils/sharded_io_test.cc", + "sha256": "bb79b135d1c788545716b16d9016e163488fe12185943dd1835f1936c8cd13aa", + "language": "C++", + "lines": 204, + "truncated": false, + "block": 9, + "row": 621 + }, + { + "path": "yggdrasil_decision_forests/utils/sharded_io_tfrecord.h", + "sha256": "97fcc1c4bafabbb3b557e9f6acf0722951d97e5fb8bdb2a26be187193c30de71", + "language": "C/C++", + "lines": 140, + "truncated": false, + "block": 9, + "row": 1527 + }, + { + "path": "yggdrasil_decision_forests/utils/smoothed_pav_calibration_fit.cc", + "sha256": "caa67126d6684cd3c1914a6248aef125eabe64fa5aab77527d92c4b6905a12c2", + "language": "C++", + "lines": 532, + "truncated": false, + "block": 9, + "row": 914 + }, + { + "path": "yggdrasil_decision_forests/utils/smoothed_pav_calibration_fit.h", + "sha256": "118b1a5791db32ba98000dfc2aa39edabbf4b5c4122bbbd063b7000c914c3c80", + "language": "C/C++", + "lines": 405, + "truncated": false, + "block": 9, + "row": 1788 + }, + { + "path": "yggdrasil_decision_forests/utils/smoothed_pav_calibration_fit_test.cc", + "sha256": "b98a21c74942b11a57364141b8cf307987c45152838c57dc4523bbdb368cd275", + "language": "C++", + "lines": 467, + "truncated": false, + "block": 9, + "row": 905 + }, + { + "path": "yggdrasil_decision_forests/utils/smoothed_pav_calibration_inference.cc", + "sha256": "0804a054a6111fc73fa7ea222b444e677cf27e3fabc22ae9d301effd796c26e0", + "language": "C++", + "lines": 123, + "truncated": false, + "block": 9, + "row": 535 + }, + { + "path": "yggdrasil_decision_forests/utils/smoothed_pav_calibration_inference.h", + "sha256": "28e12f593074359b7320ffb08943fe892defdb7fbe1c289797678a49cc758d62", + "language": "C/C++", + "lines": 210, + "truncated": false, + "block": 9, + "row": 1696 + }, + { + "path": "yggdrasil_decision_forests/utils/smoothed_pav_calibration_inference_test.cc", + "sha256": "059e224764930fcd2beaeb4944d65328164126cfd8c2831efaf39334e32c0556", + "language": "C++", + "lines": 339, + "truncated": false, + "block": 9, + "row": 834 + }, + { + "path": "yggdrasil_decision_forests/utils/snapshot.cc", + "sha256": "5ce720fa90c7015c080a7f0a4bbe9bca41aa4df9497dc21d8deb6fde8626302e", + "language": "C++", + "lines": 97, + "truncated": false, + "block": 9, + "row": 398 + }, + { + "path": "yggdrasil_decision_forests/utils/snapshot.h", + "sha256": "90cb2dea587092d5e2d505a3aff3570f91ea81fe20eabedc7b22cef3a449ec7d", + "language": "C/C++", + "lines": 56, + "truncated": false, + "block": 9, + "row": 1297 + }, + { + "path": "yggdrasil_decision_forests/utils/snapshot_test.cc", + "sha256": "0b88741b02e3acd76b41729b05c73a11d97e4d575c5d15b1ce0109e259a6037c", + "language": "C++", + "lines": 83, + "truncated": false, + "block": 9, + "row": 378 + }, + { + "path": "yggdrasil_decision_forests/utils/status_macros.h", + "sha256": "2e84d1be9f045e795ad76629b5fb65abd44b0d9c2b5f20b2c11ffe60f25ea06a", + "language": "C/C++", + "lines": 55, + "truncated": false, + "block": 9, + "row": 1273 + }, + { + "path": "yggdrasil_decision_forests/utils/status_macros_default.h", + "sha256": "254b60991b8b1debe43fe0906194a2f1e38286855e3a138050ba28856912b7e3", + "language": "C/C++", + "lines": 98, + "truncated": false, + "block": 9, + "row": 1474 + }, + { + "path": "yggdrasil_decision_forests/utils/status_macros_test.cc", + "sha256": "8dba9365a38e4b596c0255f4c46b352a200aa836f310940cf4c186233bfbf1d3", + "language": "C++", + "lines": 89, + "truncated": false, + "block": 9, + "row": 340 + }, + { + "path": "yggdrasil_decision_forests/utils/synchronization_primitives.h", + "sha256": "7727394c9ff158ec38ae0158720cdf16e0e4fb4aff56512424a33464cb8f9e21", + "language": "C/C++", + "lines": 186, + "truncated": false, + "block": 9, + "row": 1545 + }, + { + "path": "yggdrasil_decision_forests/utils/test.cc", + "sha256": "2f5ab24c634248585363d3b6deb5c68cd407a7c4dd4955adee4f80ef0c7d8164", + "language": "C++", + "lines": 286, + "truncated": false, + "block": 9, + "row": 727 + }, + { + "path": "yggdrasil_decision_forests/utils/test.h", + "sha256": "1a48001498fbc9f690004a92cb7a298c5bba56f03afe554c7649e2cfe2eb0828", + "language": "C/C++", + "lines": 153, + "truncated": false, + "block": 9, + "row": 1577 + }, + { + "path": "yggdrasil_decision_forests/utils/test_utils.cc", + "sha256": "583c020b76aa7a0108c4c45bf43bdccf70ce8ec8b38396c54b69a6dca91849bf", + "language": "C++", + "lines": 1146, + "truncated": false, + "block": 9, + "row": 1044 + }, + { + "path": "yggdrasil_decision_forests/utils/test_utils.h", + "sha256": "b80c837689adfebc03284a8a3a95d3bb9a4770307ce0fbe1ebf3d325615cb81c", + "language": "C/C++", + "lines": 480, + "truncated": false, + "block": 9, + "row": 1792 + }, + { + "path": "yggdrasil_decision_forests/utils/testing_macros.h", + "sha256": "8737aee227780bddd0c3096904f44c55e189d8dc4c88197e31dda227d91a6599", + "language": "C/C++", + "lines": 31, + "truncated": false, + "block": 9, + "row": 1194 + }, + { + "path": "yggdrasil_decision_forests/utils/testing_macros_test.cc", + "sha256": "5f0a98bc2a8552fa8bfa05fb72d75a6016457424d6aef98a69029a91f11a053e", + "language": "C++", + "lines": 52, + "truncated": false, + "block": 9, + "row": 231 + }, + { + "path": "yggdrasil_decision_forests/utils/time.cc", + "sha256": "52da35948e3c3eb3e586215923f38edeca4b3e2d139bfcdc2d000fb8f5c9a3e2", + "language": "C++", + "lines": 65, + "truncated": false, + "block": 9, + "row": 281 + }, + { + "path": "yggdrasil_decision_forests/utils/time.h", + "sha256": "271beb2400ab9f0580e95d525fd6c4adb6fa40e28c0c4110cc5ad27e3abff23d", + "language": "C/C++", + "lines": 31, + "truncated": false, + "block": 9, + "row": 1180 + }, + { + "path": "yggdrasil_decision_forests/utils/time_test.cc", + "sha256": "1d0b3540cbf3107ee31ad5e7d93738f7c2909a7b8155eb2a67ae8ec1228e95b5", + "language": "C++", + "lines": 40, + "truncated": false, + "block": 9, + "row": 238 + }, + { + "path": "yggdrasil_decision_forests/utils/uid.h", + "sha256": "405657ae1f7247827eb25eee2ef7270af9262fd5d39d54b078e5fa5199517611", + "language": "C/C++", + "lines": 48, + "truncated": false, + "block": 9, + "row": 1217 + }, + { + "path": "yggdrasil_decision_forests/utils/usage.h", + "sha256": "ef06392882c019ad0d3ab2ce60cf0af46df59c1dd4fe0ac25550df5f2099c39d", + "language": "C/C++", + "lines": 81, + "truncated": false, + "block": 9, + "row": 1421 + }, + { + "path": "yggdrasil_decision_forests/utils/usage_default.cc", + "sha256": "87b4ac8e03d91848d6771b892bef26b0566e317c2be636e1f63d55e09a50561e", + "language": "C++", + "lines": 61, + "truncated": false, + "block": 9, + "row": 278 + }, + { + "path": "yggdrasil_decision_forests/utils/zlib.cc", + "sha256": "87c239929e18a63487738ee89f6026ad18956f8247c2e6868e8de2da4922bd5d", + "language": "C++", + "lines": 289, + "truncated": false, + "block": 9, + "row": 745 + }, + { + "path": "yggdrasil_decision_forests/utils/zlib.h", + "sha256": "d710fc20c9f0e1cfa4cd6c0dba45d73bd3b2e883fe03be2a3c5b4d7681fdde6c", + "language": "C/C++", + "lines": 114, + "truncated": false, + "block": 9, + "row": 1494 + }, + { + "path": "yggdrasil_decision_forests/utils/zlib_test.cc", + "sha256": "31af6d7b4a399f56b868d181436788fcb56d2d13f4ef1639c34516a5666da8ec", + "language": "C++", + "lines": 188, + "truncated": false, + "block": 9, + "row": 597 + } + ] +} \ No newline at end of file diff --git a/manifests/9b/github.com__immunogenomics__earlylate_rna_eqtl.json b/manifests/9b/github.com__immunogenomics__earlylate_rna_eqtl.json new file mode 100644 index 0000000000000000000000000000000000000000..8109cbbb0860159df920f7418ed211e1d2631709 --- /dev/null +++ b/manifests/9b/github.com__immunogenomics__earlylate_rna_eqtl.json @@ -0,0 +1,111 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/immunogenomics/earlylate_rna_eqtl", + "url": "https://github.com/immunogenomics/EarlyLate_RNA_eQTL", + "host": "github.com", + "commit": "a11acf4a2ec09b36d0d1188e36393a604be75bdd", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "01_eQTL/01_prepdata.R", + "sha256": "54b34334b1e2de3ae94f49b6c48b981e21ee499b04c22245d333df7542715ab8", + "language": "R", + "lines": 69, + "truncated": false, + "block": 9, + "row": 13045 + }, + { + "path": "01_eQTL/02_run_PEER.R", + "sha256": "c0448ae617b3b957f0759c97957bb12cdfdc927562894d4e8fa2dbedc800b1ee", + "language": "R", + "lines": 77, + "truncated": false, + "block": 9, + "row": 12968 + }, + { + "path": "01_eQTL/02_run_PEER_rosmap.R", + "sha256": "c0448ae617b3b957f0759c97957bb12cdfdc927562894d4e8fa2dbedc800b1ee", + "language": "R", + "lines": 77, + "truncated": false, + "block": 9, + "row": 12968 + }, + { + "path": "01_eQTL/03_fastqtl.sh", + "sha256": "c9e5132643c0140f8f957fe2fd69f7302d80d8aefffa97e8456a756a4f532d4b", + "language": "Shell", + "lines": 29, + "truncated": false, + "block": 9, + "row": 14123 + }, + { + "path": "02_finemap_coloc/coloc.R", + "sha256": "66692cce6bad7dfe4623aac37c8e44a71533ee2fe9f5c8727b71c2e65f6d3cb1", + "language": "R", + "lines": 84, + "truncated": false, + "block": 9, + "row": 13070 + }, + { + "path": "02_finemap_coloc/finemap.R", + "sha256": "4a876c41c0388d2fc8b3f1369dbe785a36ef75dbce11f33ac75acfd9168b669f", + "language": "R", + "lines": 37, + "truncated": false, + "block": 9, + "row": 12847 + }, + { + "path": "03_diff_enrich/01_bedtools_categ_intersect.sh", + "sha256": "92cfeec30dec9d5edf4339b624227d80477550e11d33dc81a51e68f878f4c681", + "language": "Shell", + "lines": 5, + "truncated": false, + "block": 9, + "row": 13946 + }, + { + "path": "03_diff_enrich/02_run_enrichment.R", + "sha256": "6223de8f5eca0dce2df4df9e7ffd5edfdcf2798234b8f24a2fe8357e20d6ceb6", + "language": "R", + "lines": 60, + "truncated": false, + "block": 9, + "row": 13002 + }, + { + "path": "04_disease_coloc/coloc_GWAS.R", + "sha256": "7ed5856884003f72cc861811f08af5af92e6d8abedfa99b7101c16cd1ea89244", + "language": "R", + "lines": 130, + "truncated": false, + "block": 9, + "row": 13293 + }, + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "14a0a4729742fa63de71031a2078b62606f17d4d3254206d4bc6afd8fd659828", + "language": "Text", + "lines": 14, + "truncated": false, + "block": 9, + "row": 14473 + } + ] +} \ No newline at end of file diff --git a/manifests/9b/zenodo__17238654.json b/manifests/9b/zenodo__17238654.json new file mode 100644 index 0000000000000000000000000000000000000000..1ed67711572bee2c593f551c5781ecb5231c2ae1 --- /dev/null +++ b/manifests/9b/zenodo__17238654.json @@ -0,0 +1,588 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:17238654", + "url": "https://zenodo.org/records/17238654", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "30d36b339c933e8673b807eeb7aac15cea8b31cfe391c0ad717f22f3210859fa", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2863 + }, + { + "path": "README.md", + "sha256": "9a0e63515349210ead00a52988928785a3b7f565d637672ec7649103014f5aa7", + "language": "Text", + "lines": 49, + "truncated": false, + "block": 9, + "row": 14588 + }, + { + "path": "docs/conf.py", + "sha256": "d1dbbcac9ac45009911345d5948974a28af86a29150e985b1a9e1a7c0fb1a707", + "language": "Python", + "lines": 200, + "truncated": false, + "block": 9, + "row": 9948 + }, + { + "path": "examples/integrator-benchmarks/integrator-benchmarks.py", + "sha256": "7b9e0394106396c066d3de85a8e7fe8626a6245f9f9b12c39599f763540e8c0d", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8354 + }, + { + "path": "openmmtools/__init__.py", + "sha256": "87708625dc87f01bf4eef8de6d029fc8af5e5317d218dcb6f89eb62c52bfe8df", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6644 + }, + { + "path": "openmmtools/_version.py", + "sha256": "ed226c45b9c314754c441bee148702405b6b11af7b107882c3ac967a1f1fd46b", + "language": "Python", + "lines": 683, + "truncated": false, + "block": 9, + "row": 12065 + }, + { + "path": "openmmtools/alchemy/__init__.py", + "sha256": "b76c65532753eac8a204d42092035f2fbd956b06f139e9a08e99c1ba83affa1a", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6955 + }, + { + "path": "openmmtools/alchemy/alchemy.py", + "sha256": "57c28790058122ffcaa85bc713564a513139600bf7b5c3e31c93c97de506daa7", + "language": "Python", + "lines": 2545, + "truncated": false, + "block": 9, + "row": 12675 + }, + { + "path": "openmmtools/cache.py", + "sha256": "5288b1e184b0d99bfb146fc3ab544a12c384d4f35a86998ea93397c5593f9c18", + "language": "Python", + "lines": 811, + "truncated": false, + "block": 9, + "row": 12282 + }, + { + "path": "openmmtools/constants.py", + "sha256": "eee11d88e2fefde2780a6940e6f4ddc94273066fc7117e407e9d16ca6c423dcb", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 9, + "row": 6875 + }, + { + "path": "openmmtools/data/alanine-dipeptide-explicit/generate-pdb.py", + "sha256": "1fd73c72b2d66faa48700b513974795c50b1d29e0d832bc54ba5257dbde40928", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6756 + }, + { + "path": "openmmtools/data/alanine-dipeptide-explicit/run.sh", + "sha256": "938e742f7f3216a854bc3440af9e2706e284c63a96f7d2663b3719138663d540", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 9, + "row": 13952 + }, + { + "path": "openmmtools/data/alanine-dipeptide-gbsa/run.sh", + "sha256": "4430c79b58f37d87ff53a95c615f5b47f2330162485cfd7680cf95c15f245740", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 9, + "row": 13944 + }, + { + "path": "openmmtools/data/benzene-toluene-implicit/generate-molecules.py", + "sha256": "5c8031e67bbe8dedaca026e92633baabeca80f8e5c3ca385883dcba7171e087b", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7429 + }, + { + "path": "openmmtools/data/benzene-toluene-implicit/setup.sh", + "sha256": "5b4076b316f6d5328046d216ea6307dd1818382f7f6daad65e89f0a826297fb6", + "language": "Shell", + "lines": 19, + "truncated": false, + "block": 9, + "row": 14079 + }, + { + "path": "openmmtools/data/cb7-b2/setup.sh", + "sha256": "ded6dc7d979f0a57d185148bf7fe66dec4f96a0153e97169f93b3266f32b7fc2", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 9, + "row": 13943 + }, + { + "path": "openmmtools/data/cb7-viologen/leap/setup.sh", + "sha256": "0e67a5761a7cc13c3613548f20bf93b8c25846c5875f3e476c69551dec1e4189", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14076 + }, + { + "path": "openmmtools/data/cb7-viologen/molecules/create-viologen.py", + "sha256": "a7a395ce06d2962d20802eb49e97601883436c1b762f6079983577059601af44", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 9, + "row": 7935 + }, + { + "path": "openmmtools/data/dna_dodecamer_explicit/minimize.py", + "sha256": "b4ecb8b6b2a4909e0faabaa9526efce7973e110f9ff421cf1a6913e5dc9a76c8", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7643 + }, + { + "path": "openmmtools/data/src-explicit/prepare_pdb.py", + "sha256": "eb10b53aaa98a9b78b3e4c47bf0cffd0ffe58a974810d9c776e49b0092f28f25", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 9, + "row": 9152 + }, + { + "path": "openmmtools/data/src-implicit/prepare_pdb.py", + "sha256": "af6bf2ed2b7cd122dbcb09c31f03dc45a08c7f9a3c35b644a9e7fdd51df2e48a", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 9159 + }, + { + "path": "openmmtools/forcefactories.py", + "sha256": "189db12acae636422b4c5cd69ad6f549dcf2ac460f953f275322f880524c65dd", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 9, + "row": 10352 + }, + { + "path": "openmmtools/forces.py", + "sha256": "fc7902d0958275672463f51bbbb736d2c418ea31a582990e35fa0e86c7429524", + "language": "Python", + "lines": 1352, + "truncated": false, + "block": 9, + "row": 12531 + }, + { + "path": "openmmtools/integrators.py", + "sha256": "b01b8b72dce14b097cbc11426b240cccff6dd6b5c8de7de27d23b56ff2cda852", + "language": "Python", + "lines": 2470, + "truncated": false, + "block": 9, + "row": 12657 + }, + { + "path": "openmmtools/mcmc.py", + "sha256": "17c8fdeab5d7a0e78ffd0dc3206ab1a5e90bc8ab796b603a974df0bedf63a1e3", + "language": "Python", + "lines": 1920, + "truncated": false, + "block": 9, + "row": 12600 + }, + { + "path": "openmmtools/multistate/__init__.py", + "sha256": "9d72d14c5cdda3928625807f2e58f9bce55ef89aaade2ad574b3ee2438cf58fd", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 8452 + }, + { + "path": "openmmtools/multistate/multistateanalyzer.py", + "sha256": "56603ee867010f0ef193da3cb75df14d46b9f412bc1d2c10f2aa6fb8a6ebc01c", + "language": "Python", + "lines": 2569, + "truncated": false, + "block": 9, + "row": 12663 + }, + { + "path": "openmmtools/multistate/multistatereporter.py", + "sha256": "b663fcc21213f38e5cd8312bdf6f8a7a54ac403f2b70cdfd5ef974b13c12bf60", + "language": "Python", + "lines": 1933, + "truncated": false, + "block": 9, + "row": 12634 + }, + { + "path": "openmmtools/multistate/multistatesampler.py", + "sha256": "5c7d4d6383fd89a444a35cec19c5a123b3c41f341e1d69efcba7d62d5e2f6a1a", + "language": "Python", + "lines": 1827, + "truncated": false, + "block": 9, + "row": 12637 + }, + { + "path": "openmmtools/multistate/paralleltempering.py", + "sha256": "74f36ea5b16236abbe6f5acd6b79d0ad4f06666413d8f59919f10a436ae46ea1", + "language": "Python", + "lines": 260, + "truncated": false, + "block": 9, + "row": 11140 + }, + { + "path": "openmmtools/multistate/pymbar.py", + "sha256": "d623c88d4f5ce23ec33e68f8bee3327a4ab5bdd0d9b8c9b8a81159d17aac365b", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7634 + }, + { + "path": "openmmtools/multistate/replicaexchange.py", + "sha256": "51632b70d0ec0f08301929bbf330a65fa7642be888a1f4619b981ff5c6ee3c35", + "language": "Python", + "lines": 447, + "truncated": false, + "block": 9, + "row": 11965 + }, + { + "path": "openmmtools/multistate/sams.py", + "sha256": "cf6cf215f3c2f8a40da9bf8396910f5a1037bd282470de6774c2bb4eb45ed1d9", + "language": "Python", + "lines": 713, + "truncated": false, + "block": 9, + "row": 12368 + }, + { + "path": "openmmtools/multistate/utils.py", + "sha256": "ec9a8f5a2c0f4aeae8f85f0dd7bd0b93b7c3259f708b8353c11b41f5b77f8777", + "language": "Python", + "lines": 295, + "truncated": false, + "block": 9, + "row": 11122 + }, + { + "path": "openmmtools/respa.py", + "sha256": "0412b98b1ad38cb4796c66b39830b6797bc4937f75351727db3e4bc88865a0fc", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 9, + "row": 9384 + }, + { + "path": "openmmtools/scripts/__init__.py", + "sha256": "01ba4719c80b6fe911b091a7c05124b64eeece964e09c058ef8f9805daca546b", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4956 + }, + { + "path": "openmmtools/scripts/test_openmm_platforms.py", + "sha256": "14729ec64f3717e52b40db1dff8e66df589cf5d06e92929847cc9a3a26c08055", + "language": "Python", + "lines": 539, + "truncated": false, + "block": 9, + "row": 12003 + }, + { + "path": "openmmtools/sobol.py", + "sha256": "dfdc17547302b9dd74b864e547ff5da502fb718acd363b5c98a894c2f5230d9d", + "language": "Python", + "lines": 614, + "truncated": false, + "block": 9, + "row": 11624 + }, + { + "path": "openmmtools/states.py", + "sha256": "325486bbdd1534d4e113365f95c1c49e225f72437cc1e513b4914ba557ab8e04", + "language": "Python", + "lines": 3970, + "truncated": false, + "block": 9, + "row": 12689 + }, + { + "path": "openmmtools/storage/__init__.py", + "sha256": "282f6efff15fd77a9ee95b711bd37ff363e792d1ab57a7b5c739276afe6f5b10", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 9082 + }, + { + "path": "openmmtools/storage/iodrivers.py", + "sha256": "fcad61b2fd5274c1aac2ec2da9864ebccd8ac3d8231f8ac4d05adfe9d714fefa", + "language": "Python", + "lines": 1620, + "truncated": false, + "block": 9, + "row": 12548 + }, + { + "path": "openmmtools/storage/storageinterface.py", + "sha256": "573c7dcd275af11b110d13da6b97bdf0d98cbc8da5dc362ed1a30cef1c9325eb", + "language": "Python", + "lines": 499, + "truncated": false, + "block": 9, + "row": 11856 + }, + { + "path": "openmmtools/tests/conftest.py", + "sha256": "97bc30e06ca4c92a25edda0385beaa75dba55ecb11aa37acdf335875a59d3a55", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6734 + }, + { + "path": "openmmtools/tests/test_alchemy.py", + "sha256": "7f50cab7e89f8acc9260733a0a845146fff070e52d8ce9febdcd2cded57e68dc", + "language": "Python", + "lines": 3165, + "truncated": false, + "block": 9, + "row": 12671 + }, + { + "path": "openmmtools/tests/test_cache.py", + "sha256": "7b1bdb637c3c54331f00ac2d70babef35fb25b535e0f90a81eca6ce7e53c6330", + "language": "Python", + "lines": 465, + "truncated": false, + "block": 9, + "row": 11721 + }, + { + "path": "openmmtools/tests/test_forcefactories.py", + "sha256": "6896a1fda408a1797c0c49052ecb40de5e92ec84bdaaa5209a83be645c3d0b07", + "language": "Python", + "lines": 233, + "truncated": false, + "block": 9, + "row": 10414 + }, + { + "path": "openmmtools/tests/test_forces.py", + "sha256": "e07b933dcc6a9f051667c709a7abcf4b8e313dde7671414d1ec59b14f08aac90", + "language": "Python", + "lines": 421, + "truncated": false, + "block": 9, + "row": 11646 + }, + { + "path": "openmmtools/tests/test_integrators.py", + "sha256": "8b6475963061e753ce8e86e0a53cf6391ba339a116d48ae52018d329193bb921", + "language": "Python", + "lines": 1251, + "truncated": false, + "block": 9, + "row": 12477 + }, + { + "path": "openmmtools/tests/test_integrators_and_testsystems.py", + "sha256": "63844ae9cf0a0403182bb2f1350909ab35957df686478b695e419aac8399accd", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 9, + "row": 9095 + }, + { + "path": "openmmtools/tests/test_mcmc.py", + "sha256": "f7ff73b6fec963a43e5e464f03b4548c061bc8272046c02d4215344ccc430ff3", + "language": "Python", + "lines": 645, + "truncated": false, + "block": 9, + "row": 12107 + }, + { + "path": "openmmtools/tests/test_mixing.py", + "sha256": "4d0f61fa65596c9b3ecab16229442dc894f680e457307fb5b483f47e36b1054b", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8720 + }, + { + "path": "openmmtools/tests/test_platforms.py", + "sha256": "b1eac01142f3170332e99df762fc20f81c839181ab15e6dac94f8929d89028b1", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 9, + "row": 6460 + }, + { + "path": "openmmtools/tests/test_sampling.py", + "sha256": "23067a415be40de77e863aaf4df94809e34fba7d3b2f1af1032cd5a50c5168be", + "language": "Python", + "lines": 3011, + "truncated": false, + "block": 9, + "row": 12677 + }, + { + "path": "openmmtools/tests/test_states.py", + "sha256": "2dc15ca31116710335139acb4f87108793119890e54e57a2665ae1a50690ee50", + "language": "Python", + "lines": 2720, + "truncated": false, + "block": 9, + "row": 12668 + }, + { + "path": "openmmtools/tests/test_storage_interface.py", + "sha256": "3272d11346b241438f371de20912919398db1b982e8379c2d700356184249df0", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 9, + "row": 10001 + }, + { + "path": "openmmtools/tests/test_storage_iodrivers.py", + "sha256": "be5257e49593903cdb3c3a0ec7dc32b87f8d275520932a3ad574516a64e48dcf", + "language": "Python", + "lines": 293, + "truncated": false, + "block": 9, + "row": 11077 + }, + { + "path": "openmmtools/tests/test_testsystems.py", + "sha256": "d0ab477baa92ab52b2dcff9f54627df05a728aba5f50e7b9f4d52ddbe0cf1aa6", + "language": "Python", + "lines": 272, + "truncated": false, + "block": 9, + "row": 10455 + }, + { + "path": "openmmtools/tests/test_utils.py", + "sha256": "23a5c9c5a16d83e913306385767d664b4526d0bfbd53a1826b1a339d679bc010", + "language": "Python", + "lines": 778, + "truncated": false, + "block": 9, + "row": 12209 + }, + { + "path": "openmmtools/testsystems.py", + "sha256": "2e74e8eefdb5a69e44ea9595979756170e80fc94e2e03384c9e9e758e36466f6", + "language": "Python", + "lines": 4612, + "truncated": false, + "block": 9, + "row": 12691 + }, + { + "path": "openmmtools/utils/__init__.py", + "sha256": "3564c0a8eec8095de63d551284ebd3a45b2a03ed04d324448e55bee1853a2315", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7027 + }, + { + "path": "openmmtools/utils/equilibration.py", + "sha256": "9cbd74c86bd6ef6fbd1d90929744500de394aafcced0406e6f71bbb263746aae", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 10071 + }, + { + "path": "openmmtools/utils/utils.py", + "sha256": "913ad45dc15b3c977246069f688374849ba78ceb658297f356d210a50dc83240", + "language": "Python", + "lines": 1040, + "truncated": false, + "block": 9, + "row": 12342 + }, + { + "path": "setup.py", + "sha256": "0ceb19158ac831d33e44f0baefd577c2ad959cfbe40464dd1a4dd32819e24bc3", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 8507 + }, + { + "path": "versioneer.py", + "sha256": "f386e78239dd1c6ebaf4ef0853c5866786f5981944006e10578e571164c997c6", + "language": "Python", + "lines": 2277, + "truncated": false, + "block": 1, + "row": 9848 + } + ] +} \ No newline at end of file diff --git a/manifests/9d/zenodo__18996033.json b/manifests/9d/zenodo__18996033.json new file mode 100644 index 0000000000000000000000000000000000000000..27fe4d3149bae0f68128c6c62741aaf628b11cd5 --- /dev/null +++ b/manifests/9d/zenodo__18996033.json @@ -0,0 +1,165 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18996033", + "url": "10.5281/zenodo.18996033", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "BlockChain.py", + "sha256": "6d013b31445360f8c1c2f600067783b0633e01d4e902cee0aef8c78ba94b006e", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8731 + }, + { + "path": "Evaluation_nrml.py", + "sha256": "26c2230870d54f088d85a2337dd7d2b10fcf65bf4f114b38f516286619ccf400", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7742 + }, + { + "path": "FA.py", + "sha256": "ef29897469bd3d60a48be976f816ddeaa1361dda74b59c8b8cff49140efce964", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7393 + }, + { + "path": "FFO.py", + "sha256": "9870717ad806023a213e0c86b832193d32ed392adc5d11488f6a3e74aa4a858b", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 9, + "row": 7757 + }, + { + "path": "Global_Vars.py", + "sha256": "ed66ce246e5fb0eee59dc26ee005084512921188789bbfe52d371e208108cfa3", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6133 + }, + { + "path": "Main_Program.py", + "sha256": "e8d1ca7b4a95a07a1e6300bb35e46c9b54d72931b383315982ce88cf3bb2e9de", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 9, + "row": 10542 + }, + { + "path": "Model_ADASYN_CNN.py", + "sha256": "7c34d6e85c075b7973bd14aed53728ae891c43420795b851fccf23eb904d80e2", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 8190 + }, + { + "path": "Model_ADeepCRF.py", + "sha256": "4afe4c7c21dffc7fc04e89bfa1def712296e74af752dd9c99f6eb7fc7ad84ddf", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 7137 + }, + { + "path": "Model_ANFIS.py", + "sha256": "54d5d3484697d0638ba69938bd66e850382200b33858bc010d0cb8952c99502c", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 7187 + }, + { + "path": "Model_ANN.py", + "sha256": "faa83f931b1a655ef031e3cc657c3df70dadfe7bd6e090997d96dcbaea40174c", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 9, + "row": 7134 + }, + { + "path": "Model_SVM.py", + "sha256": "80f10403db97500e47e871283fdeed6d7b6c9038515371d438d92178ccb72837", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 7255 + }, + { + "path": "NGO.py", + "sha256": "a1b6cd80fafc168074c28b72d7067119e1b54ca095c0a6ceca9f128000c6b4e0", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7686 + }, + { + "path": "PROPOSED.py", + "sha256": "90537770dcf9fc8138fc8db94dc2e473045620714ced50916a70a9be8dd5445b", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 8170 + }, + { + "path": "Plot_Blockchain.py", + "sha256": "06617d8dcd9f7d248ab73d891043c8334c38ad07bc0649c3f72d09b60364daab", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 9, + "row": 8146 + }, + { + "path": "Plot_Results.py", + "sha256": "8bd7ae12651da56ba045162fad772d90e2ef4515a042484663fe9e109e4e0bfc", + "language": "Python", + "lines": 255, + "truncated": false, + "block": 9, + "row": 11056 + }, + { + "path": "SOA.py", + "sha256": "9af61fa66e3f8b97237389f35591d041ad1e9f0f1dcd5b9a7916e14e5106d775", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 8127 + }, + { + "path": "objective_function.py", + "sha256": "28660a6ad732c4b7e8f5e9fc75b732b7fa2e2283d114bd38e25bbddb3fcf236d", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 7008 + } + ] +} \ No newline at end of file diff --git a/manifests/9e/github.com__cbio-lab__park2023.json b/manifests/9e/github.com__cbio-lab__park2023.json new file mode 100644 index 0000000000000000000000000000000000000000..c56496e7d099432d181ed68fb3b9cd330321dec8 --- /dev/null +++ b/manifests/9e/github.com__cbio-lab__park2023.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/cbio-lab/park2023", + "url": "https://github.com/cbio-lab/PARK2023", + "host": "github.com", + "commit": "34c72695cf957cb636e06d6b92d9f622946799b3", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "60328261b9b52a020eec5995a8e0ded536d21ed967304718b57ad2343821a98a", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2777 + }, + { + "path": "README.md", + "sha256": "c92706f97255064a50b048d2edb71af3c9c0e7c240a5d738c33114af1f2342b5", + "language": "Text", + "lines": 55, + "truncated": false, + "block": 9, + "row": 14608 + } + ] +} \ No newline at end of file diff --git a/manifests/9e/zenodo__17554171.json b/manifests/9e/zenodo__17554171.json new file mode 100644 index 0000000000000000000000000000000000000000..d841b4885e2b3500b166eab37991bf8a3e015a36 --- /dev/null +++ b/manifests/9e/zenodo__17554171.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:17554171", + "url": "https://zenodo.org/records/17554171", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "create_cae_model.py", + "sha256": "2f75c8090c36cacc12522a8640cd040f30c1a307885b19ab7b440f0b7cb748e7", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 9, + "row": 10237 + }, + { + "path": "encode_frame.py", + "sha256": "7a348c403ad58a8b9b604975d161249c667d7d2e5452c4cd4708ed36eeccab46", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 9, + "row": 8576 + }, + { + "path": "lft_spness.m", + "sha256": "dbdb19f7f7f90d321417f6fbaf6dd007ca201a9efd6916f5fa653668c66a2b44", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4198 + }, + { + "path": "pop_spness.m", + "sha256": "54b2bd924f2bc688073ce78ad052d2eb776da1a7a186b194834793fbc62f1c31", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 4291 + } + ] +} \ No newline at end of file diff --git a/manifests/9f/figshare__31983450.json b/manifests/9f/figshare__31983450.json new file mode 100644 index 0000000000000000000000000000000000000000..cb9b958f7cbbdbc19ba6895a14ff9150f8f022a0 --- /dev/null +++ b/manifests/9f/figshare__31983450.json @@ -0,0 +1,147 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "figshare:31983450", + "url": "https://doi.org/10.6084/m9.figshare.31983450", + "host": "figshare.com", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Experiments/images_experiments/Tests_v2.ipynb", + "sha256": "c91adc54c5f4a5e38481577885919f20aa3a25fee06ee37e668e049ef6639058", + "language": "Jupyter", + "lines": 359, + "truncated": false, + "block": 9, + "row": 2481 + }, + { + "path": "Experiments/images_experiments/Tests_v2_RGB.ipynb", + "sha256": "40bbea1faa569c0c2632302ebdbf985b8df71e0db6f4790beb6cb888274e2afd", + "language": "Jupyter", + "lines": 471, + "truncated": false, + "block": 9, + "row": 2565 + }, + { + "path": "Experiments/images_experiments/divide_v2.ipynb", + "sha256": "db5636fe38a2c6eb16352c5d6f81382257a7ca326ec3f461794e882942c39923", + "language": "Jupyter", + "lines": 271, + "truncated": false, + "block": 9, + "row": 2420 + }, + { + "path": "Experiments/images_experiments/explaination.ipynb", + "sha256": "8b431e72b5ca2b101fa1e829aadf8489845c39acb75a6950847eb474c891b411", + "language": "Jupyter", + "lines": 115, + "truncated": false, + "block": 9, + "row": 2272 + }, + { + "path": "Experiments/tabular_experiments/tabular_explain.ipynb", + "sha256": "8c8a024e2b56aa9d42fb2d74a19aa63c1e0604217ce8ab0921745e55e96e51f2", + "language": "Jupyter", + "lines": 146, + "truncated": false, + "block": 9, + "row": 2293 + }, + { + "path": "Experiments/tabular_experiments/tabular_pp.ipynb", + "sha256": "600ba49f7942aef4fbcaca75bcef61da3d3f593601b68792f7342a7ba61b7b3f", + "language": "Jupyter", + "lines": 260, + "truncated": false, + "block": 9, + "row": 2463 + }, + { + "path": "Experiments/tabular_experiments/tabular_utils.py", + "sha256": "2d7eb05c5e25dc775f3bae900124754950c751c7824e1b9a377c5603d7b3180d", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9503 + }, + { + "path": "Experiments/text_experiments/text_pp.ipynb", + "sha256": "b482f7047d2c05284ef27b7ab92cfb4e79bd44272ab11c5eb5c850b63fb192f8", + "language": "Jupyter", + "lines": 550, + "truncated": false, + "block": 9, + "row": 2590 + }, + { + "path": "Experiments/text_experiments/text_preprocessing.ipynb", + "sha256": "7a25220400f102cb03f906b904772c8ece7f88825ae8d7d7d587b0c85e728859", + "language": "Jupyter", + "lines": 315, + "truncated": false, + "block": 9, + "row": 2522 + }, + { + "path": "README.txt", + "sha256": "939123028a7a7380fc8b90e28e34ca6083a900fe31b5f8beaf8c3df8037670e9", + "language": "Text", + "lines": 41, + "truncated": false, + "block": 9, + "row": 14499 + }, + { + "path": "Utils/Image_Explainer.py", + "sha256": "7f66d82d5188c3b16b61a55503ac8f7933c16c93c3aada9fb2f152e4754015fb", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 9, + "row": 9678 + }, + { + "path": "Utils/Tabular_Explainer.py", + "sha256": "92fad3d7a83b40c6b0296145bd12f9d8532c186727e6d0b3e11189418be6fc07", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 9, + "row": 9529 + }, + { + "path": "Utils/Text_Explainer.py", + "sha256": "83c0948e60dc789036652b54a21fa44b038bbdffdae1291546fdd29307669722", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 9, + "row": 10353 + }, + { + "path": "Utils/preprocessing.py", + "sha256": "cb90ca0eebe1a22e5c2b987b18a502b2ad72529ece01e4d7e15e1b173de91e85", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 9, + "row": 9980 + }, + { + "path": "Utils/trainer.py", + "sha256": "1320fc131f8cc9c33933c4cf3bcfe87a1eb323f0268e76e7a1baa2e5d34ef44d", + "language": "Python", + "lines": 407, + "truncated": false, + "block": 9, + "row": 11639 + } + ] +} \ No newline at end of file diff --git a/manifests/9f/zenodo__18180000.json b/manifests/9f/zenodo__18180000.json new file mode 100644 index 0000000000000000000000000000000000000000..1ed3d63ffef79d33528f4fa96ad4b2899156dd0d --- /dev/null +++ b/manifests/9f/zenodo__18180000.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18180000", + "url": "https://doi.org/10.5281/zenodo.18180000", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Proteomic_Analysis_Dengetal.Rmd", + "sha256": "5138101bfd67f4ca9545a7b30fa995a1ae487ec46b377d671a8ca13efb2e0e45", + "language": "R", + "lines": 1188, + "truncated": false, + "block": 9, + "row": 13854 + }, + { + "path": "RNAseq processing.zip/justHOMER_repeats_JDD.sh", + "sha256": "2dac28fe8b12a80c7dcd8c4ac6dd7d49da8d2e31c8742cd22fbf1063883bf5d3", + "language": "Shell", + "lines": 10, + "truncated": false, + "block": 9, + "row": 13932 + }, + { + "path": "RNAseq processing.zip/justHOMER_tags_JDD.sh", + "sha256": "a50a0543daa06e0460d74a85c9e8fb8dbff012412bdfa4a832c81e4761e4e2dc", + "language": "Shell", + "lines": 10, + "truncated": false, + "block": 9, + "row": 13918 + }, + { + "path": "RNAseq processing.zip/justSTAR_JDD.sh", + "sha256": "6206c75d5a8c6a42a747aa9fbc00dc86a0390f9ae672c889c9b8a0be2db6026f", + "language": "Shell", + "lines": 63, + "truncated": false, + "block": 9, + "row": 14246 + }, + { + "path": "RNAseq_Analysis_Dengetal.Rmd", + "sha256": "cde95f5d3497c65af05dc715c17d404e5195b95a3ba376d454975e3b279e2095", + "language": "R", + "lines": 1135, + "truncated": false, + "block": 9, + "row": 13852 + } + ] +} \ No newline at end of file diff --git a/manifests/a1/github.com__openfreeenergy__pontibus.json b/manifests/a1/github.com__openfreeenergy__pontibus.json new file mode 100644 index 0000000000000000000000000000000000000000..4ce91dd82ba94c5633592f32b241349097014512 --- /dev/null +++ b/manifests/a1/github.com__openfreeenergy__pontibus.json @@ -0,0 +1,408 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/openfreeenergy/pontibus", + "url": "https://github.com/OpenFreeEnergy/pontibus/tree/v0.3.0", + "host": "github.com", + "commit": "8daed785d93162c0159adbd4f01b9a9a3f2d7294", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "1b622dc6ac17d1ea847d2d774cf756c11bd38f2956cacf6ddd4967c584403437", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2793 + }, + { + "path": "README.md", + "sha256": "6d0b6110bbe9d70083f656b0ebbf1ae38690a4e5ab1e14158ae81f1fb998e85e", + "language": "Text", + "lines": 10, + "truncated": false, + "block": 9, + "row": 14471 + }, + { + "path": "benchmarks/subsampled/gen_systems.py", + "sha256": "c3cd5fd2cc385f23b8c44246ad944ea5c076de5819cd453fee94d57b5378a5ba", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 8316 + }, + { + "path": "devtools/gen_serialized_results.py", + "sha256": "0f6eea1cc9eddc2b7b6cd6149dfaa0633d0fe1ed8b8178eb2540d106dee65302", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 9, + "row": 9955 + }, + { + "path": "docs/_ext/sass.py", + "sha256": "b8e7bd5d0c3846d44e105debadb689ec6311a74c12d16e9977fa816f0525b6c2", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8248 + }, + { + "path": "docs/conf.py", + "sha256": "36ca891584d1a390e04b8949a7e7c242a1462aa0328508353a7a59225be0daf1", + "language": "Python", + "lines": 179, + "truncated": false, + "block": 9, + "row": 9588 + }, + { + "path": "src/pontibus/__init__.py", + "sha256": "a6e10481710c7e589f59358eaef6dfa951c8e5c0a27889e227d4d22ada358d42", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6334 + }, + { + "path": "src/pontibus/components/__init__.py", + "sha256": "53aab7b78d36b2ecb2046cd8aa3a60fb08c93fc5810c43adb52e860ba8257e18", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6365 + }, + { + "path": "src/pontibus/components/extended_solvent_component.py", + "sha256": "6522e82ed15b491d7ae100019aa571602ab83d2eb4b72b3fa602cc88b316ca72", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 9, + "row": 8657 + }, + { + "path": "src/pontibus/protocols/relative/__init__.py", + "sha256": "6a84d37b637960a3c83d4da569d8fffa0ebf8de99043ae60aa59887a5125c61c", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6702 + }, + { + "path": "src/pontibus/protocols/relative/hybridtop_protocol.py", + "sha256": "f07ab60d00d6b7138257b6b6480d68ea4d5ffee6ede740786f894949cb3e3bc8", + "language": "Python", + "lines": 196, + "truncated": false, + "block": 9, + "row": 10218 + }, + { + "path": "src/pontibus/protocols/relative/hybridtop_protocol_results.py", + "sha256": "06e7e8201b10d1053d16db7b6f470847467de2abe6f231678ddace74c0251226", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6635 + }, + { + "path": "src/pontibus/protocols/relative/hybridtop_units.py", + "sha256": "dee515d3a280aa1df9f84909ee75a9e1d13d7e2418b4d5ce701a8ad7c524cb9c", + "language": "Python", + "lines": 450, + "truncated": false, + "block": 9, + "row": 11588 + }, + { + "path": "src/pontibus/protocols/relative/settings.py", + "sha256": "5f5af57d1d800bc8bf33d297f214fd334777e7f151246f2eb71aa971d338e936", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7156 + }, + { + "path": "src/pontibus/protocols/solvation/__init__.py", + "sha256": "972d5834f7540343ad7b4fcc91384ed12163331eccc5b85167f68ad8c47a2735", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 6889 + }, + { + "path": "src/pontibus/protocols/solvation/asfe_protocol.py", + "sha256": "e2cdb34e3df9a0ef2153c2ad6be028a46468912b870a9223cf74a4ef7b795230", + "language": "Python", + "lines": 304, + "truncated": false, + "block": 9, + "row": 11097 + }, + { + "path": "src/pontibus/protocols/solvation/asfe_protocol_results.py", + "sha256": "f8589383ccad6e59af785d719ea803dc81fd811fa13df220e2189b7486a65148", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6633 + }, + { + "path": "src/pontibus/protocols/solvation/asfe_protocol_units.py", + "sha256": "2cb67efb2909428b496145f276712c8a20b6bd50ff6a3b42ed3e6c010d8de3e2", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 7942 + }, + { + "path": "src/pontibus/protocols/solvation/base.py", + "sha256": "b9d8413ef696e842063b674fa219b06262ea5a58ddc335c6bd67e9368aa7206e", + "language": "Python", + "lines": 285, + "truncated": false, + "block": 9, + "row": 10898 + }, + { + "path": "src/pontibus/protocols/solvation/settings.py", + "sha256": "e1cb84682dea5d6bd9631ff74c5a301b1e074bc7241864d703552def33c7e52b", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7427 + }, + { + "path": "src/pontibus/tests/components/test_extendedsolvent.py", + "sha256": "a11d72ff25de1f35a1285ccc965b3fdecb663bde18011cf44a3e9725644d5194", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 9, + "row": 9430 + }, + { + "path": "src/pontibus/tests/conftest.py", + "sha256": "30f8776aba57a5c74ff836c069b6b9f3e4addedf7dd5b0e67edf9b02951c8ca5", + "language": "Python", + "lines": 373, + "truncated": false, + "block": 9, + "row": 11109 + }, + { + "path": "src/pontibus/tests/protocols/relative/conftest.py", + "sha256": "0008153b0bacd5a880f3396312180bbb960aa38c5e506fe95df82e987efaa50f", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7000 + }, + { + "path": "src/pontibus/tests/protocols/relative/test_protocol.py", + "sha256": "7459ab3ae9037a6d858a907dc30dff15e1c4dd5617badb04d6f78842a8591836", + "language": "Python", + "lines": 806, + "truncated": false, + "block": 9, + "row": 12264 + }, + { + "path": "src/pontibus/tests/protocols/relative/test_protocol_slow.py", + "sha256": "60d49d91a440e15a5033952724e6373ee3bc725c715c5fcff6b58e7584e662a4", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 9, + "row": 8716 + }, + { + "path": "src/pontibus/tests/protocols/relative/test_results.py", + "sha256": "5d70c56c13fac2b8689d41ce532358652bbb56c75e277b00c770312411597765", + "language": "Python", + "lines": 185, + "truncated": false, + "block": 9, + "row": 9953 + }, + { + "path": "src/pontibus/tests/protocols/relative/test_tokenization.py", + "sha256": "8c915218603e1d46b76993bc4782d6e1e88da7800450b6c0bc2f2676b36dd22b", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 9, + "row": 8680 + }, + { + "path": "src/pontibus/tests/protocols/solvation/conftest.py", + "sha256": "760025253223c898d088ae8c65a351dd761fe0675f4c71f8516758d5be2bc2e0", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7225 + }, + { + "path": "src/pontibus/tests/protocols/solvation/test_dry_run.py", + "sha256": "adcdf8a7591f01a49ba5b297bdbbf7d2ce87730a0b02b824894c955a6059abe5", + "language": "Python", + "lines": 394, + "truncated": false, + "block": 9, + "row": 11227 + }, + { + "path": "src/pontibus/tests/protocols/solvation/test_results.py", + "sha256": "a401ba47a2c5e8e876394c6696345a5fe462c97a3cbf38edea73ccc88696fc5d", + "language": "Python", + "lines": 195, + "truncated": false, + "block": 9, + "row": 10157 + }, + { + "path": "src/pontibus/tests/protocols/solvation/test_tokenization.py", + "sha256": "57ebaf16db5843c1bd4f793a3b36c28eee9df2a494a5aa672fe8ee44baa8dd5c", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 9, + "row": 9319 + }, + { + "path": "src/pontibus/tests/protocols/solvation/test_validation.py", + "sha256": "ff01dbe48d9bfac5068cc9e1e3fcfba0b04e6b881f9144bfc57831859f78ee0e", + "language": "Python", + "lines": 317, + "truncated": false, + "block": 9, + "row": 10909 + }, + { + "path": "src/pontibus/tests/utils/test_molecule_utils.py", + "sha256": "2b303c2ef40c04a169fb18d649c9cc1af4a793ca4de6c69dc9e4d01d9cc2f8df", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7460 + }, + { + "path": "src/pontibus/tests/utils/test_settings.py", + "sha256": "c3d86122abcb5d6a6d993a838e6428c4a1acc34a690554502cb3b825d67038a8", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 8997 + }, + { + "path": "src/pontibus/tests/utils/test_system_creation.py", + "sha256": "bb34783214acd6ab413fe06fe349c2dff1d56c8f9b4f7e9ee5d369ca0dcf9874", + "language": "Python", + "lines": 2175, + "truncated": false, + "block": 9, + "row": 12603 + }, + { + "path": "src/pontibus/tests/utils/test_system_manipulation.py", + "sha256": "1d2f7d6bb01cd661599ca1a6a8f85396d47c162c9813f035aa433cefc6c9c010", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 9, + "row": 9706 + }, + { + "path": "src/pontibus/utils/experimental_absolute_factory.py", + "sha256": "984c2f33e0f25992eb11c7e20d4e1c11e5409214af4faa30383c538f9078f425", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 9, + "row": 9901 + }, + { + "path": "src/pontibus/utils/molecule_utils.py", + "sha256": "4fe69d2c4f50f923c4d485c8c16ee4e1d5151995719ec838ddd098c239ef0147", + "language": "Python", + "lines": 252, + "truncated": false, + "block": 9, + "row": 10116 + }, + { + "path": "src/pontibus/utils/molecules.py", + "sha256": "f7df83adf41c3295a56d4cfe8d2961ca2722624f52eae2129c08a8afb6c07ed9", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 7845 + }, + { + "path": "src/pontibus/utils/protocol_utils.py", + "sha256": "823bb622d15bcb3f066d558c34a4b927e1b5a3f0f5cea8a68f6a36c32daeb1a9", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 9, + "row": 8270 + }, + { + "path": "src/pontibus/utils/settings.py", + "sha256": "4851324725463ade89f52a9a92bfc4aaafe47ff2a85a53146b43b6bf5d4efa9c", + "language": "Python", + "lines": 227, + "truncated": false, + "block": 9, + "row": 10171 + }, + { + "path": "src/pontibus/utils/system_creation.py", + "sha256": "58d6a50ce931de96eff657b854a1f8eb4dd165331f86a212b26edee068d5d259", + "language": "Python", + "lines": 583, + "truncated": false, + "block": 9, + "row": 11922 + }, + { + "path": "src/pontibus/utils/system_manipulation.py", + "sha256": "007a40b72a9c4c16b56b844016f3b7bbe3cafffa49fa6369ddb22cf52d1f3f3a", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 9, + "row": 9700 + }, + { + "path": "src/pontibus/utils/system_solvation.py", + "sha256": "f0c43a16918b97b3f34beadfb0bb80fc65179278881a9d52aa4801f6f1bcce97", + "language": "Python", + "lines": 562, + "truncated": false, + "block": 9, + "row": 11821 + } + ] +} \ No newline at end of file diff --git a/manifests/a2/github.com__biomedia__mirtk.json b/manifests/a2/github.com__biomedia__mirtk.json new file mode 100644 index 0000000000000000000000000000000000000000..7eddb1c008ae4dab55bb6fbd15934867791faa21 --- /dev/null +++ b/manifests/a2/github.com__biomedia__mirtk.json @@ -0,0 +1,6366 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/biomedia/mirtk", + "url": "https://github.com/BioMedIA/MIRTK", + "host": "github.com", + "commit": "ef71a176c120447b3f95291901af7af8b4f00544", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "Applications/lib/python/mirtk/atlas/spatiotemporal.py", + "sha256": "bbba6d101d164105ae27893a615fceee42acbb90e63ffe2d3f8f8776c3e140d2", + "language": "Python", + "lines": 1574, + "truncated": false, + "block": 9, + "row": 12598 + }, + { + "path": "Applications/lib/python/mirtk/batch/condor.py", + "sha256": "087a4a062aa6db650e99ed75413432f3666a977973d520117be1fb6c4d3fd221", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 9, + "row": 11222 + }, + { + "path": "Applications/lib/python/mirtk/batch/slurm.py", + "sha256": "41b57b3a580ca96384ce8786393685340ed5f433b0b052fdad64e5657567c05e", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 9, + "row": 10231 + }, + { + "path": "Applications/lib/python/mirtk/utils.py", + "sha256": "deade9e5986416098a4eea861c5ba4b3439a1ff0e9310d0928d65b507f3af81b", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 9, + "row": 7292 + }, + { + "path": "Applications/src/aggregate-images.cc", + "sha256": "4ebc8b3541819f17b89b28e7865b84073c5c77e4368e09da4c102bb6ce5376d8", + "language": "C++", + "lines": 811, + "truncated": false, + "block": 9, + "row": 980 + }, + { + "path": "Applications/src/auto-contrast.cc", + "sha256": "2adcaca70ad938dad916a1660c32f81fd6b8ab0999c7ebcf1823629201eb8a4e", + "language": "C++", + "lines": 101, + "truncated": false, + "block": 9, + "row": 402 + }, + { + "path": "Applications/src/average-dofs.cc", + "sha256": "540d09701ee0d817621040e93fbf74270e70a74c5f677719275e6662e0d70d45", + "language": "C++", + "lines": 929, + "truncated": false, + "block": 9, + "row": 1037 + }, + { + "path": "Applications/src/average-images.cc", + "sha256": "671b5414c897f48f014ab7f481a615e76435d3eb7e2ee3a668c7f1a32aad6b8e", + "language": "C++", + "lines": 1353, + "truncated": false, + "block": 9, + "row": 1059 + }, + { + "path": "Applications/src/average-measure.py", + "sha256": "e39c142a78d3f3b8b43502c9a45a0b061806cb8be00d7ae0bc8975755461fa5a", + "language": "Python", + "lines": 263, + "truncated": false, + "block": 9, + "row": 11107 + }, + { + "path": "Applications/src/average-overlap.py", + "sha256": "30cd32e252ffecc3c9d5ce324701ae8162a3c2de9f1806b86072b31f89c5eae8", + "language": "Python", + "lines": 275, + "truncated": false, + "block": 9, + "row": 11013 + }, + { + "path": "Applications/src/bisect-dof.cc", + "sha256": "ed8961a5c13edbc503ff4cc5a71d2c96ac3eceaa9fe23e70995d505aee7fd18b", + "language": "C++", + "lines": 62, + "truncated": false, + "block": 9, + "row": 291 + }, + { + "path": "Applications/src/blend-surface.cc", + "sha256": "376189c199a7447f682f832fae05fa86dfb19644b6182e7d5c1a45258ede42e8", + "language": "C++", + "lines": 484, + "truncated": false, + "block": 9, + "row": 896 + }, + { + "path": "Applications/src/calculate-distance-map.cc", + "sha256": "8ae1efbe3e8bc9ab892f7e0eca3abe2c604ec0a6f4b895a04346db21794e0748", + "language": "C++", + "lines": 426, + "truncated": false, + "block": 9, + "row": 837 + }, + { + "path": "Applications/src/calculate-element-wise.cc", + "sha256": "2643e7874babdfa6ccc19f8aa2869cba12d3ca84092208c6fc23ba44c5a285b5", + "language": "C++", + "lines": 1101, + "truncated": false, + "block": 9, + "row": 1053 + }, + { + "path": "Applications/src/calculate-exponential-map.cc", + "sha256": "c771153bc0329025697074c0ba9fea431e02192327cc79dc76a457e07b39455c", + "language": "C++", + "lines": 199, + "truncated": false, + "block": 9, + "row": 615 + }, + { + "path": "Applications/src/calculate-lie-bracket.cc", + "sha256": "eb239ecdda9fadc7b1ff1b6391bdde5d78a6c51584208f22fa321d5d2242c93e", + "language": "C++", + "lines": 211, + "truncated": false, + "block": 9, + "row": 612 + }, + { + "path": "Applications/src/calculate-logarithmic-map.cc", + "sha256": "84576d144b60d7b47d5a27e5125cf0cb8de29cf6c7b5d8489e4060513388b1d8", + "language": "C++", + "lines": 219, + "truncated": false, + "block": 9, + "row": 663 + }, + { + "path": "Applications/src/calculate-surface-attributes.cc", + "sha256": "b953483fc9fbf7796fc706ccfa68ef2247a5240b7a33d0a284bf912d8c574ce9", + "language": "C++", + "lines": 891, + "truncated": false, + "block": 9, + "row": 1016 + }, + { + "path": "Applications/src/calculate-surface-spectrum.cc", + "sha256": "863456f52d5167949061cb4ebb318c6f1b5600089fc768da59ab5f5f9b993539", + "language": "C++", + "lines": 477, + "truncated": false, + "block": 9, + "row": 910 + }, + { + "path": "Applications/src/clean-surface.cc", + "sha256": "97bd8dba986ba70d661cd80b0385b3b390d51bd6100a0ca045b70ef363f8fcaa", + "language": "C++", + "lines": 358, + "truncated": false, + "block": 9, + "row": 802 + }, + { + "path": "Applications/src/close-image.cc", + "sha256": "3a306c1b0087fe3e3695e8e2e3e8ceeea5acf53cf2afcc1c47a8f69e81052d40", + "language": "C++", + "lines": 100, + "truncated": false, + "block": 9, + "row": 406 + }, + { + "path": "Applications/src/close-scalars.cc", + "sha256": "dc56cb6092b8ecf7e4b0a8b31d5b020ff8baf7d65de1c913cdabe808c1dad113", + "language": "C++", + "lines": 180, + "truncated": false, + "block": 9, + "row": 624 + }, + { + "path": "Applications/src/combine-images.cc", + "sha256": "2bcc66025da337a8cc1ac215c24a3355058b72cba5e313fd4d4cadd531c33299", + "language": "C++", + "lines": 417, + "truncated": false, + "block": 9, + "row": 846 + }, + { + "path": "Applications/src/compose-dofs.cc", + "sha256": "ab616ecfeb49a159848ec6afba75eed93977f0c9861348dc496dccbc380945b9", + "language": "C++", + "lines": 357, + "truncated": false, + "block": 9, + "row": 833 + }, + { + "path": "Applications/src/construct-atlas.py", + "sha256": "592f51afc32e2fb76ad2407b027872f4427a7d04baf91435d6a3811cb37aa8b4", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 10335 + }, + { + "path": "Applications/src/convert-dof.cc", + "sha256": "17ca810948154c21bfc1852ac9b9052edf9b31a16a239f93e6b553f7cda999d9", + "language": "C++", + "lines": 3007, + "truncated": false, + "block": 9, + "row": 1099 + }, + { + "path": "Applications/src/convert-image.cc", + "sha256": "62510ed749caee93411e17c87bdfbe5ba438f003cf1a735ded875c6d79c462d2", + "language": "C++", + "lines": 115, + "truncated": false, + "block": 9, + "row": 461 + }, + { + "path": "Applications/src/convert-mris.py", + "sha256": "ed1c22dc6f4d3c31c6d1d66f84d8a84e2c4ff992e6865b5e9271a3eb554c9fa3", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 9, + "row": 8903 + }, + { + "path": "Applications/src/convert-pointset-to-mat.cc", + "sha256": "fc31d86787ff1a197a061efc32abf2feddb5c9c4f5f203c06d3f6f97b2d96360", + "language": "C++", + "lines": 240, + "truncated": false, + "block": 9, + "row": 686 + }, + { + "path": "Applications/src/convert-pointset.cc", + "sha256": "d7b64a4623a326f94cd2f982f5be31509d36e168870c88ee4257045d0c37b1da", + "language": "C++", + "lines": 366, + "truncated": false, + "block": 9, + "row": 844 + }, + { + "path": "Applications/src/copy-pointset-attributes-from-mat.cc", + "sha256": "3def14130c9e10e03150210eaff39a6e6d4a44ceaf1c46cca5339468eb0dd248", + "language": "C++", + "lines": 320, + "truncated": false, + "block": 9, + "row": 825 + }, + { + "path": "Applications/src/copy-pointset-attributes.cc", + "sha256": "f89956635e3dbaadf518ca1e233edb50644aa68661bcc98cb8cd45d8666e57b0", + "language": "C++", + "lines": 699, + "truncated": false, + "block": 9, + "row": 974 + }, + { + "path": "Applications/src/cut-brain.cc", + "sha256": "e1e7cc3e9e87dae73a325f7b8858ab33e21b4f8723c8374c04abdc7e63d274be", + "language": "C++", + "lines": 281, + "truncated": false, + "block": 9, + "row": 726 + }, + { + "path": "Applications/src/decimate-surface.cc", + "sha256": "a74eb1d96840104d9229ac6a036aaa5ee5e4f8e0a3ae11a310166acb6192afcf", + "language": "C++", + "lines": 176, + "truncated": false, + "block": 9, + "row": 664 + }, + { + "path": "Applications/src/delete-pointset-attributes.cc", + "sha256": "f0cb3274cc13f352cbfa0b2aaecfdf5b306b9f56d868fb853c2a441e305951f7", + "language": "C++", + "lines": 140, + "truncated": false, + "block": 9, + "row": 540 + }, + { + "path": "Applications/src/detect-cardiac-phases.cc", + "sha256": "1e2aac1e45fe362663e2ddb9e7205e3238a9d4ba1d77850c4c12347d77ada1db", + "language": "C++", + "lines": 132, + "truncated": false, + "block": 9, + "row": 460 + }, + { + "path": "Applications/src/detect-edges.cc", + "sha256": "ba7fa73c1f448aef999c29266234fb0f447dc59f152f310c76df45b7bd40d01a", + "language": "C++", + "lines": 311, + "truncated": false, + "block": 9, + "row": 785 + }, + { + "path": "Applications/src/dilate-image.cc", + "sha256": "fc8de9f828068428d5e539135a045a6087b774869d1160be31e5ba7d3879f26b", + "language": "C++", + "lines": 100, + "truncated": false, + "block": 9, + "row": 411 + }, + { + "path": "Applications/src/dilate-scalars.cc", + "sha256": "1371c425e0393793d232d1b6efc3f64bf270806b5e1a53f1048379ff314b60cc", + "language": "C++", + "lines": 180, + "truncated": false, + "block": 9, + "row": 626 + }, + { + "path": "Applications/src/downsample-image.cc", + "sha256": "86d519b94d054d64ba0a0163abbdde0fba40fdee20da6f0c480b6d99f69d5c6c", + "language": "C++", + "lines": 120, + "truncated": false, + "block": 9, + "row": 488 + }, + { + "path": "Applications/src/edit-dof.cc", + "sha256": "4fefa6b6fbb1444ecad443269d75abf2fc816f9f16e623fbcdc796a583ef89c8", + "language": "C++", + "lines": 249, + "truncated": false, + "block": 9, + "row": 714 + }, + { + "path": "Applications/src/edit-image.cc", + "sha256": "cb4a04860b58dd86f660c7cedbea4bf2dd9b5249a9634d286badc91cce8cf9e1", + "language": "C++", + "lines": 300, + "truncated": false, + "block": 9, + "row": 798 + }, + { + "path": "Applications/src/erode-image.cc", + "sha256": "0756d06038bf31c2d0e9ad71351b9451b7ee757417148370c19b90c9cf63db1d", + "language": "C++", + "lines": 101, + "truncated": false, + "block": 9, + "row": 408 + }, + { + "path": "Applications/src/erode-scalars.cc", + "sha256": "ea46530f71c595d9f3e18f7e8d75fdf60a0f63de03336345f7f2bd1115c7399a", + "language": "C++", + "lines": 180, + "truncated": false, + "block": 9, + "row": 625 + }, + { + "path": "Applications/src/evaluate-atlas.py", + "sha256": "8bf2d99d29e7ab42adef2bd477200efd5657d6dc7869e4fbb2de0a56178d1a21", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 8044 + }, + { + "path": "Applications/src/evaluate-cardiac-motion.cc", + "sha256": "4e3090cbfdad6e67621a384b647a21b677ebdbd6bd4c14a7196f42bf384955da", + "language": "C++", + "lines": 483, + "truncated": false, + "block": 9, + "row": 916 + }, + { + "path": "Applications/src/evaluate-distance.cc", + "sha256": "150c0b22c26dc289e52fdfe529421b04e566a2825ca38cb94b85d924b081d5c4", + "language": "C++", + "lines": 578, + "truncated": false, + "block": 9, + "row": 939 + }, + { + "path": "Applications/src/evaluate-distortion.cc", + "sha256": "b7908c247a99552dcad644db3c938e595342cb96214fa512415e34fd97c79aae", + "language": "C++", + "lines": 375, + "truncated": false, + "block": 9, + "row": 831 + }, + { + "path": "Applications/src/evaluate-dof.cc", + "sha256": "8f993a8fbc066e8250b3b1c43c3023ff4054ee5d0ee4a89028f60f10069b2c88", + "language": "C++", + "lines": 369, + "truncated": false, + "block": 9, + "row": 850 + }, + { + "path": "Applications/src/evaluate-jacobian.cc", + "sha256": "574f51a78966071ecc8ef694bdf20276f1ec3d0797d5500253333cf0d682403a", + "language": "C++", + "lines": 560, + "truncated": false, + "block": 9, + "row": 934 + }, + { + "path": "Applications/src/evaluate-label-overlap.cc", + "sha256": "bcdc1ceae2339864053d333b72b6ecb06fadb500601e2d624f1dbc418da14555", + "language": "C++", + "lines": 827, + "truncated": false, + "block": 9, + "row": 994 + }, + { + "path": "Applications/src/evaluate-overlap.cc", + "sha256": "603b3daa92ffd2498c177fa5a0c44433cc8be7924080078806f61830487f6651", + "language": "C++", + "lines": 950, + "truncated": false, + "block": 9, + "row": 1011 + }, + { + "path": "Applications/src/evaluate-similarity.cc", + "sha256": "02959b52b49b7943602723b7b951d495a4d6085ff14a96b5cf3e734b375e3f39", + "language": "C++", + "lines": 597, + "truncated": false, + "block": 9, + "row": 941 + }, + { + "path": "Applications/src/evaluate-surface-mesh.cc", + "sha256": "d5ac3d438618c994a9a2eacfa7d229ee16f25bccf182175c58d130b3eb19dc35", + "language": "C++", + "lines": 729, + "truncated": false, + "block": 9, + "row": 988 + }, + { + "path": "Applications/src/evaluate-surface-overlap.cc", + "sha256": "5b481d167884504f05137d425e7baf4c76f0d1a1c485bf9b4e7366ca09e2e503", + "language": "C++", + "lines": 594, + "truncated": false, + "block": 9, + "row": 953 + }, + { + "path": "Applications/src/extract-connected-components.cc", + "sha256": "fe6fdf38bdad17d9d13513253a26be487e037adafe66fea03e35db6a9ca95706", + "language": "C++", + "lines": 244, + "truncated": false, + "block": 9, + "row": 699 + }, + { + "path": "Applications/src/extract-connected-points.cc", + "sha256": "d780dbc2ee310fd92d9dc331a8236469089830736d75d77325ffc9beee0ea705", + "language": "C++", + "lines": 139, + "truncated": false, + "block": 9, + "row": 520 + }, + { + "path": "Applications/src/extract-image-region.cc", + "sha256": "2b45145b2c23ec0bae6e5a9d45505f92b10a1e7354fd34099e1b378f8a8663e0", + "language": "C++", + "lines": 517, + "truncated": false, + "block": 9, + "row": 921 + }, + { + "path": "Applications/src/extract-image-slice.py", + "sha256": "64d4e7d6159306d92b54eff6cb5c75a9b8f907afece4b0e60646f4883f32ba9b", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6870 + }, + { + "path": "Applications/src/extract-image-volume.py", + "sha256": "3de724999910dbc7cca35bed150c4d0b7a57a42ca06ab186ef22de46c9413405", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6884 + }, + { + "path": "Applications/src/extract-pointset-cells.cc", + "sha256": "bdb85339dd1ea099d30f0df84f1ad896b32c56f841b2115ac9a4f9272580de32", + "language": "C++", + "lines": 238, + "truncated": false, + "block": 9, + "row": 706 + }, + { + "path": "Applications/src/extract-pointset-surface.cc", + "sha256": "b12b9c39846efa07ebf991f006f548bfce05e155b26c258de775034a29a71db8", + "language": "C++", + "lines": 634, + "truncated": false, + "block": 9, + "row": 961 + }, + { + "path": "Applications/src/extract-surface.cc", + "sha256": "e26b7dd86a1836221a736f0e0a54b11a34e01cb9d80274cff7d699ad70042461", + "language": "C++", + "lines": 132, + "truncated": false, + "block": 9, + "row": 506 + }, + { + "path": "Applications/src/flip-image.cc", + "sha256": "2d3ca9fc2876dedaed883cc5ea773dc9f37fc8a0bbe642f057c43cca9b19c205", + "language": "C++", + "lines": 168, + "truncated": false, + "block": 9, + "row": 582 + }, + { + "path": "Applications/src/help-rst.py", + "sha256": "866bd3a478a46dd5c0a2ae200efe23a79b7240fcd4c99f5fec05aaa9ae92ad99", + "language": "Python", + "lines": 401, + "truncated": false, + "block": 9, + "row": 11608 + }, + { + "path": "Applications/src/info.cc", + "sha256": "7d73632166e030e17108ef87fe645436f0f0569f0a7c56f2c77decec240d6ee1", + "language": "C++", + "lines": 816, + "truncated": false, + "block": 9, + "row": 991 + }, + { + "path": "Applications/src/init-dof.cc", + "sha256": "25aa042f4bb81bbcc0f864bfd4c3bb4cae101146c2442cf53492762c2882f279", + "language": "C++", + "lines": 900, + "truncated": false, + "block": 9, + "row": 1015 + }, + { + "path": "Applications/src/invert-dof.cc", + "sha256": "ca5bb8a094e91b3f83b79263e66e280d117574b517302765556d6563cbe94c92", + "language": "C++", + "lines": 208, + "truncated": false, + "block": 9, + "row": 635 + }, + { + "path": "Applications/src/match-histogram.cc", + "sha256": "157f94a9de5d20e53643fa166740fdaf16564353b31bcaba3d029c8b57d4f622", + "language": "C++", + "lines": 125, + "truncated": false, + "block": 9, + "row": 487 + }, + { + "path": "Applications/src/match-points.cc", + "sha256": "2fe23b7aeb9b2891a8f9775ad8acf42225851290801b0b3ee01f40b194ffac3e", + "language": "C++", + "lines": 292, + "truncated": false, + "block": 9, + "row": 801 + }, + { + "path": "Applications/src/merge-surfaces.cc", + "sha256": "a0710dc6bffbf325da8a1cc50827c33d4b82632e9114b667a99a559719f4ac98", + "language": "C++", + "lines": 3427, + "truncated": false, + "block": 9, + "row": 1100 + }, + { + "path": "Applications/src/offset-surface.cc", + "sha256": "269802d079f1f3f0052b4c952c8bd8e7be2270ff08dd3344fec2edfa5622e55a", + "language": "C++", + "lines": 434, + "truncated": false, + "block": 9, + "row": 883 + }, + { + "path": "Applications/src/open-image.cc", + "sha256": "b4b99705913bbe612b853c043aa12c3afcf34f7a564b87cb9399e0f143a01cdf", + "language": "C++", + "lines": 112, + "truncated": false, + "block": 9, + "row": 450 + }, + { + "path": "Applications/src/open-scalars.cc", + "sha256": "f7e7bb80d6edda60ad3a2130ec759f5d47508f7a1bd6a7d69c28779ab4e2bb67", + "language": "C++", + "lines": 180, + "truncated": false, + "block": 9, + "row": 623 + }, + { + "path": "Applications/src/project-onto-surface.cc", + "sha256": "89b50cf98a728fbea44282456df2b9eda879aa7425ce2902666205d6fd8e118c", + "language": "C++", + "lines": 2059, + "truncated": false, + "block": 9, + "row": 1093 + }, + { + "path": "Applications/src/random-dof.cc", + "sha256": "50993a7a6f2525eebb151c399f9719cdc6e80944617620bc3aeac1535fcb2b8c", + "language": "C++", + "lines": 323, + "truncated": false, + "block": 9, + "row": 799 + }, + { + "path": "Applications/src/reflect-image.cc", + "sha256": "886737ed9eae6556cf22a175d2bebb2a29d3bc950395dba837409c96e5a5b1c9", + "language": "C++", + "lines": 105, + "truncated": false, + "block": 9, + "row": 412 + }, + { + "path": "Applications/src/register-points.cc", + "sha256": "1e39239e247d01cc497547e82b4806bad0f32e051e0d95550ee4b1bc6f375b6a", + "language": "C++", + "lines": 448, + "truncated": false, + "block": 9, + "row": 887 + }, + { + "path": "Applications/src/register.cc", + "sha256": "1d849371c71aaf61a69a3bd9b36b6767f13f7a7bca3b3b126846451c99723c49", + "language": "C++", + "lines": 1271, + "truncated": false, + "block": 9, + "row": 1055 + }, + { + "path": "Applications/src/remesh-surface.cc", + "sha256": "04bc38178a93b41081517d172384b1c77f27585578eaca67b00edbbaa1facedc", + "language": "C++", + "lines": 351, + "truncated": false, + "block": 9, + "row": 860 + }, + { + "path": "Applications/src/resample-image.cc", + "sha256": "357587e8af79ac13016b5a0b2e26d6d51eed2c60e411876aeda95471d515631b", + "language": "C++", + "lines": 289, + "truncated": false, + "block": 9, + "row": 782 + }, + { + "path": "Applications/src/smooth-image.cc", + "sha256": "e36a22fb4b71609a3bc593f84460c4538e4d5e5495a7e2b0a94c616d63723bd1", + "language": "C++", + "lines": 199, + "truncated": false, + "block": 9, + "row": 633 + }, + { + "path": "Applications/src/smooth-surface.cc", + "sha256": "6b1f6198d84c7a536c25f104597cee1282bb2b5147c1b90e8554c407c00c5f65", + "language": "C++", + "lines": 837, + "truncated": false, + "block": 9, + "row": 989 + }, + { + "path": "Applications/src/subdivide-brain-image.cc", + "sha256": "6174e0b94d902107362cd8ffa62677b9b97bf08fb059bf625078c2fb544811a7", + "language": "C++", + "lines": 1874, + "truncated": false, + "block": 9, + "row": 1070 + }, + { + "path": "Applications/src/transform-image.cc", + "sha256": "899fb444f9664edb642aa526988e8f7b3c4c7ea1c6facfd9f1020e6fee7e4da3", + "language": "C++", + "lines": 980, + "truncated": false, + "block": 9, + "row": 1017 + }, + { + "path": "Applications/src/transform-points.cc", + "sha256": "4e3c4c4f27b2815acee337a74ca1a222cf86acf6f28abf399ec1292f97e4ccb1", + "language": "C++", + "lines": 290, + "truncated": false, + "block": 9, + "row": 779 + }, + { + "path": "Applications/tools/mirtk.py", + "sha256": "d2fd83c730964187f26850e4cbedc568f9f85992002cc95cff4719bff989ab90", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 9, + "row": 8645 + }, + { + "path": "CMake/Basis/get_python_lib.py", + "sha256": "f03d3f9ac95bc807afb0b4992e694fb92cb3382213d16e0ab259ce53f38be61c", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7693 + }, + { + "path": "Documentation/tools/write-commands-overview.py", + "sha256": "9c95b6deb8d1fd2b7eab39e9d4d85a4ed7f141ab1a6ead4ca2f847733b57a20c", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 8335 + }, + { + "path": "Documentation/tools/write-commands-summary.py", + "sha256": "9e08ba7c5e0f100c5da65b557c33d7931cab4686cb7e1837d546c5bfd60ff2e3", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 8401 + }, + { + "path": "Examples/helloworld/flip.cc", + "sha256": "621de4add8e1d4dd342d7fc9bc8322a13b7f2720310a629c1e09965844495422", + "language": "C++", + "lines": 152, + "truncated": false, + "block": 9, + "row": 543 + }, + { + "path": "LICENSE.txt", + "sha256": "43070e2d4e532684de521b885f385d0841030efa2b1a20bafb76133a5e1379c1", + "language": "License", + "lines": 201, + "truncated": false, + "block": 6, + "row": 2066 + }, + { + "path": "Modules/Common/include/mirtk/Algorithm.h", + "sha256": "f491809180d207353914c29c6d1ca29279f79ce137d3328caf1dba55e847a4c9", + "language": "C/C++", + "lines": 333, + "truncated": false, + "block": 9, + "row": 1682 + }, + { + "path": "Modules/Common/include/mirtk/Allocate.h", + "sha256": "e43bfcfade1b5e6e128b3b32cbf1bd6d7f9846ae76107267acb417788718899a", + "language": "C/C++", + "lines": 504, + "truncated": false, + "block": 9, + "row": 1773 + }, + { + "path": "Modules/Common/include/mirtk/Array.h", + "sha256": "0e0223e829e2b1c2e5bfca079996d32fb9dcb001a2dfe3b9d4c08ce91999b6e8", + "language": "C/C++", + "lines": 35, + "truncated": false, + "block": 9, + "row": 1159 + }, + { + "path": "Modules/Common/include/mirtk/ArrayHeap.h", + "sha256": "74108e68f5973e8673dac474bb919b69fd9a1f112eb44986be06d1c68e869893", + "language": "C/C++", + "lines": 43, + "truncated": false, + "block": 9, + "row": 1178 + }, + { + "path": "Modules/Common/include/mirtk/Assert.h", + "sha256": "e0cad48cb3033b48a49d4bb853062c1b917271173115479bfdcde3fef8d5a560", + "language": "C/C++", + "lines": 40, + "truncated": false, + "block": 9, + "row": 1228 + }, + { + "path": "Modules/Common/include/mirtk/Cfstream.h", + "sha256": "87577dea6d1949fac824cb7f076417c8d803d8fca918aa6f8ed0feb85c5595e4", + "language": "C/C++", + "lines": 28, + "truncated": false, + "block": 9, + "row": 1151 + }, + { + "path": "Modules/Common/include/mirtk/Cifstream.h", + "sha256": "6f83bbc6300883e6548d0621b9c8d501ed6ef8d556353f854b8cd99216cb13f8", + "language": "C/C++", + "lines": 112, + "truncated": false, + "block": 9, + "row": 1427 + }, + { + "path": "Modules/Common/include/mirtk/Cofstream.h", + "sha256": "36f3b3b0def3aa61c4e83698a4d73467042fc475386a258744d762e444dae1b0", + "language": "C/C++", + "lines": 139, + "truncated": false, + "block": 9, + "row": 1505 + }, + { + "path": "Modules/Common/include/mirtk/Common.h", + "sha256": "77593841bf3174c55ce59632fbbbfe8447eeb774b28ab398f147378dc1b1e89c", + "language": "C/C++", + "lines": 71, + "truncated": false, + "block": 9, + "row": 1270 + }, + { + "path": "Modules/Common/include/mirtk/Config.h", + "sha256": "a52d57de6917d624f9d1b8b550abb6e8e1e4b5e7123b6c83205836fcc9d5afef", + "language": "C/C++", + "lines": 71, + "truncated": false, + "block": 9, + "row": 1303 + }, + { + "path": "Modules/Common/include/mirtk/Configurable.h", + "sha256": "1bad521803e469c6927e24bb1544ca5a7ab85aad89fd76e8c64d26dc0772313d", + "language": "C/C++", + "lines": 146, + "truncated": false, + "block": 9, + "row": 1507 + }, + { + "path": "Modules/Common/include/mirtk/Cuda.h", + "sha256": "2f154163b3d34bfde3cf4070169638bc2a36295971dca7350cbba21da77cdc36", + "language": "C/C++", + "lines": 31, + "truncated": false, + "block": 9, + "row": 1150 + }, + { + "path": "Modules/Common/include/mirtk/CudaRuntime.h", + "sha256": "9ba9b912765bec86d359880c0eeb53725ac3b8cb6be017e41411c7e07e29f4b4", + "language": "C/C++", + "lines": 152, + "truncated": false, + "block": 9, + "row": 1481 + }, + { + "path": "Modules/Common/include/mirtk/CutilMath.h", + "sha256": "61d834c3b6aa44c3b93f7279c93045490afb1b4b4e4fef67608bc2e1b79e54fa", + "language": "C/C++", + "lines": 1461, + "truncated": false, + "block": 9, + "row": 1835 + }, + { + "path": "Modules/Common/include/mirtk/DataSelection.h", + "sha256": "8f2134b5fbe00683b1ce6bb5df1c41f7f8518b5f1dc6576e0c5ba9b6c674ddbc", + "language": "C/C++", + "lines": 295, + "truncated": false, + "block": 9, + "row": 1659 + }, + { + "path": "Modules/Common/include/mirtk/Deallocate.h", + "sha256": "fa5fd6d359d4f06d5dd5ab3d34ba51f4be8aa469dade869c6ec190fffb735fed", + "language": "C/C++", + "lines": 105, + "truncated": false, + "block": 9, + "row": 1418 + }, + { + "path": "Modules/Common/include/mirtk/EnergyMeasure.h", + "sha256": "33e627c77b2db860b38d69e418066376090fab5c5da6437830f147cf17141892", + "language": "C/C++", + "lines": 377, + "truncated": false, + "block": 9, + "row": 1777 + }, + { + "path": "Modules/Common/include/mirtk/Event.h", + "sha256": "a615da195bee58db9262dc3d5afdfa3172fe83a1330ce56a262d262f60373f57", + "language": "C/C++", + "lines": 184, + "truncated": false, + "block": 9, + "row": 1598 + }, + { + "path": "Modules/Common/include/mirtk/EventDelegate.h", + "sha256": "09ddd4a518ef3643ff0fd6f6f0392fe7773991705c8dfe98637783c995ffb5ee", + "language": "C/C++", + "lines": 241, + "truncated": false, + "block": 9, + "row": 1658 + }, + { + "path": "Modules/Common/include/mirtk/Exception.h", + "sha256": "474d3d82bc0355c75226749678942709a73251a40f05efe0c4f6982cc4558c59", + "language": "C/C++", + "lines": 84, + "truncated": false, + "block": 9, + "row": 1380 + }, + { + "path": "Modules/Common/include/mirtk/FastDelegate.h", + "sha256": "fa10599bd89c323f4740d834d0cbaa21d22361b3eadbf609b5a870ac3532ff6f", + "language": "C/C++", + "lines": 2115, + "truncated": false, + "block": 9, + "row": 1867 + }, + { + "path": "Modules/Common/include/mirtk/Indent.h", + "sha256": "e956cc14619d52263e4eba6fc528d7b2e9ebde2d612083e8f36d2a709db68715", + "language": "C/C++", + "lines": 157, + "truncated": false, + "block": 9, + "row": 1430 + }, + { + "path": "Modules/Common/include/mirtk/List.h", + "sha256": "548f43d4eb622901bc3e7e176e2370e013536037025af97851a84fd9c18d53aa", + "language": "C/C++", + "lines": 35, + "truncated": false, + "block": 9, + "row": 1157 + }, + { + "path": "Modules/Common/include/mirtk/Math.h", + "sha256": "316dad0fcf430ea7ccd7b4cc7ff8575b8ec6946e8bd9fa43e9fb2df217079782", + "language": "C/C++", + "lines": 3851, + "truncated": false, + "block": 9, + "row": 1868 + }, + { + "path": "Modules/Common/include/mirtk/Matlab.h", + "sha256": "dc5db353f189ad23ec3c07417b9267ff4fc122f57a82a9a6bd8ff0bb2aa3e453", + "language": "C/C++", + "lines": 151, + "truncated": false, + "block": 9, + "row": 1584 + }, + { + "path": "Modules/Common/include/mirtk/Memory.h", + "sha256": "47ea9df00aa1fec27e81cfa559c450b7a87ce5e603948e3d95edad48c61c7ddb", + "language": "C/C++", + "lines": 106, + "truncated": false, + "block": 9, + "row": 1373 + }, + { + "path": "Modules/Common/include/mirtk/Numeric.h", + "sha256": "0d60e01059113e834d3e7934db0f77ec993c7409ca24bfc4674104b39d71a623", + "language": "C/C++", + "lines": 42, + "truncated": false, + "block": 9, + "row": 1171 + }, + { + "path": "Modules/Common/include/mirtk/Object.h", + "sha256": "2600c0d4630750d4f912ab0b3138151bf80c4afc68d2610bb6f0ccdfae9df5b6", + "language": "C/C++", + "lines": 483, + "truncated": false, + "block": 9, + "row": 1802 + }, + { + "path": "Modules/Common/include/mirtk/ObjectFactory.h", + "sha256": "38a8482f56de2a0086d65247d40011e63952f9301766b20d0239866fac4dea85", + "language": "C/C++", + "lines": 179, + "truncated": false, + "block": 9, + "row": 1617 + }, + { + "path": "Modules/Common/include/mirtk/Observable.h", + "sha256": "c9007f37de697ec3f5930fd9f689f011e088d072044d07647d8a969e37e0400c", + "language": "C/C++", + "lines": 214, + "truncated": false, + "block": 9, + "row": 1611 + }, + { + "path": "Modules/Common/include/mirtk/Observer.h", + "sha256": "7121743e10e1f521c3a9ac6d87f0853eb2cce949bce6d300b13702fffaeedb7e", + "language": "C/C++", + "lines": 100, + "truncated": false, + "block": 9, + "row": 1352 + }, + { + "path": "Modules/Common/include/mirtk/Options.h", + "sha256": "3ad53ab7d64dd595d4b4b23aff23de115c5caa50ef80ff1df5c5e7c1ba88b7de", + "language": "C/C++", + "lines": 302, + "truncated": false, + "block": 9, + "row": 1760 + }, + { + "path": "Modules/Common/include/mirtk/OrderedMap.h", + "sha256": "9f40dd22542dc27c7ab82f5beb6c0030fc4050d20be3bded2b4999f1ce987148", + "language": "C/C++", + "lines": 34, + "truncated": false, + "block": 9, + "row": 1161 + }, + { + "path": "Modules/Common/include/mirtk/OrderedSet.h", + "sha256": "983d0c29a9ee015b66c1b249610a5e5ea4c7e415fabaca37832a84b46b41cc5d", + "language": "C/C++", + "lines": 34, + "truncated": false, + "block": 9, + "row": 1158 + }, + { + "path": "Modules/Common/include/mirtk/Pair.h", + "sha256": "e9b0200402fbb7e1b77f059bbe8bbfa651c1eec1ffb899fc705883cc376e5c56", + "language": "C/C++", + "lines": 41, + "truncated": false, + "block": 9, + "row": 1167 + }, + { + "path": "Modules/Common/include/mirtk/Parallel.h", + "sha256": "6f58d8aa160eb979a1bc077c1d52dbd39fbd4167a2cd91dfc8498f6d695b93c8", + "language": "C/C++", + "lines": 245, + "truncated": false, + "block": 9, + "row": 1641 + }, + { + "path": "Modules/Common/include/mirtk/Path.h", + "sha256": "0f8c99aef7eeb31df129271c6f798bebc48b48be5cf6d3bb19fff93c01efbe58", + "language": "C/C++", + "lines": 85, + "truncated": false, + "block": 9, + "row": 1390 + }, + { + "path": "Modules/Common/include/mirtk/PriorityQueue.h", + "sha256": "030e2dd36c00e2a3b18411f7084fd6fd3e61753905688a95bb69a209efc6bdea", + "language": "C/C++", + "lines": 35, + "truncated": false, + "block": 9, + "row": 1168 + }, + { + "path": "Modules/Common/include/mirtk/Profiling.h", + "sha256": "59e8a36714ce36206ee069e2c2b6c26c7b089ed4cca52287e4575c3ad2aa221d", + "language": "C/C++", + "lines": 432, + "truncated": false, + "block": 9, + "row": 1774 + }, + { + "path": "Modules/Common/include/mirtk/Queue.h", + "sha256": "1f9a19500ae62d07b2b71929b53bce940d9b2d35e16f7533a64f67ae7906abd2", + "language": "C/C++", + "lines": 38, + "truncated": false, + "block": 9, + "row": 1160 + }, + { + "path": "Modules/Common/include/mirtk/Random.h", + "sha256": "698bb93fdca2807b5d5ca7683bb4a50ced055f9248e1f7b74d88e4ac0160c6eb", + "language": "C/C++", + "lines": 40, + "truncated": false, + "block": 9, + "row": 1172 + }, + { + "path": "Modules/Common/include/mirtk/Stack.h", + "sha256": "f6d639cf31c519424d202c7a0771938ca4a04fc986e9b94fb6dd845be9f4943e", + "language": "C/C++", + "lines": 34, + "truncated": false, + "block": 9, + "row": 1153 + }, + { + "path": "Modules/Common/include/mirtk/Status.h", + "sha256": "157b5c3ee01393dc645ad76291bd6e2b1402ba2d5c2005285f355362a14f27f5", + "language": "C/C++", + "lines": 37, + "truncated": false, + "block": 9, + "row": 1176 + }, + { + "path": "Modules/Common/include/mirtk/Stream.h", + "sha256": "b94d50445b1061084faf08068b4083093601febded8b213376afe479962effe2", + "language": "C/C++", + "lines": 68, + "truncated": false, + "block": 9, + "row": 1233 + }, + { + "path": "Modules/Common/include/mirtk/String.h", + "sha256": "db0d668c1af7f406abc4fad5845b694501eb8d3b648295a77426977f7423ee7c", + "language": "C/C++", + "lines": 371, + "truncated": false, + "block": 9, + "row": 1726 + }, + { + "path": "Modules/Common/include/mirtk/System.h", + "sha256": "fd7e4e5b2e16acf54a907cbd2806fb00bffbb3cdbb7ea9bd21ee36ecce78a5cc", + "language": "C/C++", + "lines": 47, + "truncated": false, + "block": 9, + "row": 1182 + }, + { + "path": "Modules/Common/include/mirtk/Terminal.h", + "sha256": "6d71e5321ccb50565972cd44a44e04800406af0ebbab8438318eae978ce1e631", + "language": "C/C++", + "lines": 117, + "truncated": false, + "block": 9, + "row": 1490 + }, + { + "path": "Modules/Common/include/mirtk/TestProd.h", + "sha256": "cfb555f7980c3e97b4c728505379a95cb8981de7462ae216ef98b208b2d0c730", + "language": "C/C++", + "lines": 32, + "truncated": false, + "block": 9, + "row": 1174 + }, + { + "path": "Modules/Common/include/mirtk/UnorderedMap.h", + "sha256": "cc618b52e98cabef92c500512928428adce044452e1ee45cd23ef7e88438d619", + "language": "C/C++", + "lines": 34, + "truncated": false, + "block": 9, + "row": 1175 + }, + { + "path": "Modules/Common/include/mirtk/UnorderedSet.h", + "sha256": "aadbbf8a11b4b932ce885e9d9aa459bdac7c2c6e1eeeb6caa74d6d59d919160c", + "language": "C/C++", + "lines": 34, + "truncated": false, + "block": 9, + "row": 1173 + }, + { + "path": "Modules/Common/include/mirtk/Utils.h", + "sha256": "827c7382efa392a80a0a9a3ca8c6711fb7f5b5f82bf72ec7919c853fcb2ea5f1", + "language": "C/C++", + "lines": 51, + "truncated": false, + "block": 9, + "row": 1206 + }, + { + "path": "Modules/Common/include/mirtk/Version.h", + "sha256": "b864c59bc7d1a568cece6e3a189380439fb6559f95400942827846f8b3ce2225", + "language": "C/C++", + "lines": 244, + "truncated": false, + "block": 9, + "row": 1644 + }, + { + "path": "Modules/Common/include/mirtk/Vtk.h", + "sha256": "d5b379f918f2761b562ae649ea7e4e5804e40fd29e158a1b9807527ba63ea3ca", + "language": "C/C++", + "lines": 186, + "truncated": false, + "block": 9, + "row": 1652 + }, + { + "path": "Modules/Common/include/mirtk/VtkMath.h", + "sha256": "fca5f9613bcd9db45fcc643b68c6c102eb7aea41d1ace52652f9a53e02f93de6", + "language": "C/C++", + "lines": 66, + "truncated": false, + "block": 9, + "row": 1286 + }, + { + "path": "Modules/Common/src/Cifstream.cc", + "sha256": "fd239f3ae48341214ea00e3041cde5b8337c48ded0d76877746e8d006e6d464e", + "language": "C++", + "lines": 214, + "truncated": false, + "block": 9, + "row": 616 + }, + { + "path": "Modules/Common/src/Cofstream.cc", + "sha256": "e7ae3935f72afc192d2db9b12c45a74d8a25dc116d3064a92bf4a33efd651d5f", + "language": "C++", + "lines": 280, + "truncated": false, + "block": 9, + "row": 728 + }, + { + "path": "Modules/Common/src/Configurable.cc", + "sha256": "647df9681c7bc1f18d4b127c8b907558da0d3c0c385ad6f44d6a9182a6e1bc25", + "language": "C++", + "lines": 174, + "truncated": false, + "block": 9, + "row": 559 + }, + { + "path": "Modules/Common/src/Math.cc", + "sha256": "dbb4a0e9053ee8abee849d3411539d1d8d8205e322c2087e2a6a16a7fcb33c5e", + "language": "C++", + "lines": 39, + "truncated": false, + "block": 9, + "row": 198 + }, + { + "path": "Modules/Common/src/Matlab.cc", + "sha256": "e85087da24b0e30f5fd631cacd98899abdf8e84c4569ad5645caf7da5eb855f6", + "language": "C++", + "lines": 72, + "truncated": false, + "block": 9, + "row": 280 + }, + { + "path": "Modules/Common/src/Memory.cc", + "sha256": "1a42de5b377f85129f14828b16a969943a656b0e9ca368dabafd16ecd8a0f493", + "language": "C++", + "lines": 205, + "truncated": false, + "block": 9, + "row": 601 + }, + { + "path": "Modules/Common/src/Observer.cc", + "sha256": "d27e10c5cec1a81b448b58de0b8f2d9a66bc421114b52217c388646331348a62", + "language": "C++", + "lines": 96, + "truncated": false, + "block": 9, + "row": 350 + }, + { + "path": "Modules/Common/src/Options.cc", + "sha256": "4c988979821c62880a63a7d9b23ea8caa929f5bc8bc29d53091b145a228d7785", + "language": "C++", + "lines": 194, + "truncated": false, + "block": 9, + "row": 617 + }, + { + "path": "Modules/Common/src/Parallel.cc", + "sha256": "870ff09715e6cf8593fa08a39389e7881a13a03747d4c35173042c064f0ec600", + "language": "C++", + "lines": 120, + "truncated": false, + "block": 9, + "row": 446 + }, + { + "path": "Modules/Common/src/Path.cc", + "sha256": "1b6beffecb0fd5caa742bdb8b2c7e9361dadaaf81389668d24f020e3d86733f2", + "language": "C++", + "lines": 156, + "truncated": false, + "block": 9, + "row": 500 + }, + { + "path": "Modules/Common/src/Profiling.cc", + "sha256": "48764a0e49f82df80532ac183a27f2da463edf53743c2e78a2b1c71d865e8b90", + "language": "C++", + "lines": 177, + "truncated": false, + "block": 9, + "row": 593 + }, + { + "path": "Modules/Common/src/String.cc", + "sha256": "e00080026220f1d29787ee337da599ecfa8ed35507239616b0fdec44f17b687a", + "language": "C++", + "lines": 326, + "truncated": false, + "block": 9, + "row": 719 + }, + { + "path": "Modules/Common/src/System.cc", + "sha256": "77495b323d6d121706742558f238cdd9495cad538925a5ab5fa7f9da553e31fb", + "language": "C++", + "lines": 102, + "truncated": false, + "block": 9, + "row": 348 + }, + { + "path": "Modules/Common/src/Terminal.cc", + "sha256": "28f1e2c1a5130ea57814dc78a89d0d65b91fd2b1bcacfec0180320b4bca775ff", + "language": "C++", + "lines": 147, + "truncated": false, + "block": 9, + "row": 556 + }, + { + "path": "Modules/Common/src/Version.cc", + "sha256": "508cbdc2e6b51f47003e9b0d2da6c86cceeae237ec6504e99ccbfb38b92b52e7", + "language": "C++", + "lines": 54, + "truncated": false, + "block": 9, + "row": 249 + }, + { + "path": "Modules/Common/src/Vtk.cc", + "sha256": "92078f60cb1a46937344f7061d0f7081c68348d3f5168eff0e2c1b7a82dc9150", + "language": "C++", + "lines": 77, + "truncated": false, + "block": 9, + "row": 367 + }, + { + "path": "Modules/Common/test/testString.cc", + "sha256": "1ccd3ab8115f2f4575ef7810b15ce2dc4870224fc75ac63d15358d4288c3254d", + "language": "C++", + "lines": 294, + "truncated": false, + "block": 9, + "row": 744 + }, + { + "path": "Modules/IO/include/mirtk/GIPLImageReader.h", + "sha256": "71855d481e7c70c3b1f61cf5ed0fc6bc5f0624e60e8721aef69fa1d9487b6d94", + "language": "C/C++", + "lines": 60, + "truncated": false, + "block": 9, + "row": 1238 + }, + { + "path": "Modules/IO/include/mirtk/GIPLImageWriter.h", + "sha256": "1a704cb5daa84aaec8eb566bbdce3e3c4ff0ef0fdff7efbd367c991714d123ac", + "language": "C/C++", + "lines": 56, + "truncated": false, + "block": 9, + "row": 1193 + }, + { + "path": "Modules/IO/include/mirtk/MetaImageReader.h", + "sha256": "7db6e59c5e7ef52ca0c3f0bc77f7dcc369968419be2e560005514990f936216e", + "language": "C/C++", + "lines": 83, + "truncated": false, + "block": 9, + "row": 1279 + }, + { + "path": "Modules/IO/include/mirtk/MetaImageWriter.h", + "sha256": "0f64ee992e4c4cedbc001386c423502d0e7f5f8f7ecc98b2d1eedf30f84e9f48", + "language": "C/C++", + "lines": 60, + "truncated": false, + "block": 9, + "row": 1192 + }, + { + "path": "Modules/IO/include/mirtk/NiftiImageInfo.h", + "sha256": "fd61100695076f195e9189b4489f065e51efe41a912d58835ecc278ea637962d", + "language": "C/C++", + "lines": 201, + "truncated": false, + "block": 9, + "row": 1665 + }, + { + "path": "Modules/IO/include/mirtk/NiftiImageReader.h", + "sha256": "6d902fd09622f628547044cc3f9514af9a2f224270a7393f79aa3a09aa2b4afc", + "language": "C/C++", + "lines": 82, + "truncated": false, + "block": 9, + "row": 1290 + }, + { + "path": "Modules/IO/include/mirtk/NiftiImageWriter.h", + "sha256": "25e99d1fc03947e45b1bcadcf3f5e9baa743d7b4dfb53dac390fbf677d5a7d19", + "language": "C/C++", + "lines": 77, + "truncated": false, + "block": 9, + "row": 1242 + }, + { + "path": "Modules/IO/include/mirtk/PGMImageReader.h", + "sha256": "198f863495385ee27e8f3f9628dd5c911fd266cd0cb011f26b715d1ca4b764e6", + "language": "C/C++", + "lines": 59, + "truncated": false, + "block": 9, + "row": 1226 + }, + { + "path": "Modules/IO/include/mirtk/PGMImageWriter.h", + "sha256": "5cc7591b257a73bc8d0e68f7672c238d4d0971559df4cadf949beac91ef70da8", + "language": "C/C++", + "lines": 59, + "truncated": false, + "block": 9, + "row": 1203 + }, + { + "path": "Modules/IO/include/mirtk/PNGImageWriter.h", + "sha256": "a174c467acce3cb2db992daa9a15be73c48af9d08c7fd62aa2cb38b6db3801e4", + "language": "C/C++", + "lines": 59, + "truncated": false, + "block": 9, + "row": 1204 + }, + { + "path": "Modules/IO/include/mirtk/PointSetIO.h", + "sha256": "a5fb62c1308ecdd39bd106274d7570c4b16b7bc7b98f3491ffe2a59197b9d500", + "language": "C/C++", + "lines": 432, + "truncated": false, + "block": 9, + "row": 1786 + }, + { + "path": "Modules/IO/src/GIPL.h", + "sha256": "4b57ea285625984132c0b58d37d0b953d61c9fdd6028c48fa2c5026b2631bc0c", + "language": "C/C++", + "lines": 52, + "truncated": false, + "block": 9, + "row": 1220 + }, + { + "path": "Modules/IO/src/GIPLImageReader.cc", + "sha256": "aba85c668c9ca0c24cdd887525d60d1b61a5c061e39d57758d86c730248f8983", + "language": "C++", + "lines": 170, + "truncated": false, + "block": 9, + "row": 539 + }, + { + "path": "Modules/IO/src/GIPLImageWriter.cc", + "sha256": "042d386f327db31f847a8e7c4763618f836519db4de6d5ddd67cbad232ece832", + "language": "C++", + "lines": 145, + "truncated": false, + "block": 9, + "row": 479 + }, + { + "path": "Modules/IO/src/IOConfig.cc", + "sha256": "9f8c82649df91e32a5d27fd0db55a191de1b870ba055b21b0f9c4da92702d191", + "language": "C++", + "lines": 84, + "truncated": false, + "block": 9, + "row": 323 + }, + { + "path": "Modules/IO/src/MetaImageReader.cc", + "sha256": "569e4578fa18b35a8be710bf9a347a028be49c1d167a5d91b7ab0bdd7dbfa4a1", + "language": "C++", + "lines": 239, + "truncated": false, + "block": 9, + "row": 653 + }, + { + "path": "Modules/IO/src/MetaImageWriter.cc", + "sha256": "d5dd458ecefc3ca83ebffc112aa93f5323a34d236910e9c0ce23ed46eb935452", + "language": "C++", + "lines": 202, + "truncated": false, + "block": 9, + "row": 587 + }, + { + "path": "Modules/IO/src/NiftiImage.cc", + "sha256": "ddb46358ce956e9c0b988c37550ffb73302fb87b287d847a84a59574033d9cf3", + "language": "C++", + "lines": 164, + "truncated": false, + "block": 9, + "row": 558 + }, + { + "path": "Modules/IO/src/NiftiImage.h", + "sha256": "60313bfb55672843da72ba54727f97f33d9ae7d00d15f9dbcfe67ad0b27ba4c0", + "language": "C/C++", + "lines": 82, + "truncated": false, + "block": 9, + "row": 1299 + }, + { + "path": "Modules/IO/src/NiftiImageInfo.cc", + "sha256": "4403e7beb13320e85a4ec49f2bfbea31b5da807d586e7bdc30fe839da1a22bc5", + "language": "C++", + "lines": 256, + "truncated": false, + "block": 9, + "row": 775 + }, + { + "path": "Modules/IO/src/NiftiImageReader.cc", + "sha256": "f75a25963b33598ea37d5523f37b93dcedd75fc005d3500cd7467a0092c9f81b", + "language": "C++", + "lines": 432, + "truncated": false, + "block": 9, + "row": 847 + }, + { + "path": "Modules/IO/src/NiftiImageWriter.cc", + "sha256": "b287183514062be02bc65c0d253e77cc3d500b92703585f635c694069c251c9b", + "language": "C++", + "lines": 235, + "truncated": false, + "block": 9, + "row": 683 + }, + { + "path": "Modules/IO/src/PGM.h", + "sha256": "63a397db8072a551066391cba981290342c1449cb2cb031490e8ee1694ece590", + "language": "C/C++", + "lines": 27, + "truncated": false, + "block": 9, + "row": 1149 + }, + { + "path": "Modules/IO/src/PGMImageReader.cc", + "sha256": "c56d7b5c06b03a85b7c4cb25bda5598327e5151ee83a45e9daef4bdb23d54ff0", + "language": "C++", + "lines": 109, + "truncated": false, + "block": 9, + "row": 369 + }, + { + "path": "Modules/IO/src/PGMImageWriter.cc", + "sha256": "b1339eeae21c77b81280349730b9088710052ba4f250360c0308c30b6a7cc1f4", + "language": "C++", + "lines": 140, + "truncated": false, + "block": 9, + "row": 472 + }, + { + "path": "Modules/IO/src/PNGImageWriter.cc", + "sha256": "ac7b1de5f0265436857418dd0427b3994ce554cf07a0a410f644a70a4ca06ba2", + "language": "C++", + "lines": 150, + "truncated": false, + "block": 9, + "row": 519 + }, + { + "path": "Modules/IO/src/PointSetIO.cc", + "sha256": "6669096c49d311d00938d6d47048f7d198ff009b60dc1c80e120002166685e8d", + "language": "C++", + "lines": 2214, + "truncated": false, + "block": 9, + "row": 1090 + }, + { + "path": "Modules/IO/src/brainsuite/dfsurface.h", + "sha256": "c853435d9f15c4080c2bf57def8d468a3fbba3066c07966a5de9fe80001a5556", + "language": "C/C++", + "lines": 375, + "truncated": false, + "block": 9, + "row": 1757 + }, + { + "path": "Modules/IO/src/gifti/gifti_io.cc", + "sha256": "05fb3f27eb55d515f9f181dbaf01bd5a8a190312b91edc66df849d14ebacca5c", + "language": "C++", + "lines": 4582, + "truncated": false, + "block": 9, + "row": 1104 + }, + { + "path": "Modules/IO/src/gifti/gifti_io.h", + "sha256": "105f98bcfa928cc82f5ebe2340bed4f6bf1d466c95309b141e46e8d93fa9cbff", + "language": "C/C++", + "lines": 347, + "truncated": false, + "block": 9, + "row": 1764 + }, + { + "path": "Modules/IO/src/gifti/gifti_xml.cc", + "sha256": "724f103d44480fba62d87ea152e69778096b7ea120807fadb9594df240254776", + "language": "C++", + "lines": 3140, + "truncated": false, + "block": 9, + "row": 1098 + }, + { + "path": "Modules/IO/src/gifti/gifti_xml.h", + "sha256": "ce08fad5d34d2b6daa2edbb5b27502d3718083c4d42b49d0950214d7c766c3c7", + "language": "C/C++", + "lines": 143, + "truncated": false, + "block": 9, + "row": 1623 + }, + { + "path": "Modules/IO/src/meta/metaEvent.h", + "sha256": "de280e3b1a43832e5d980554b3cbe870c0f28c7c8738e888a6ca0fbfca6e8051", + "language": "C/C++", + "lines": 65, + "truncated": false, + "block": 9, + "row": 1191 + }, + { + "path": "Modules/IO/src/meta/metaIOConfig.h", + "sha256": "98432655e3c144bc76c06e6be9e9ac7e20e4e47b0810cf8b7596ce0c4385df34", + "language": "C/C++", + "lines": 9, + "truncated": false, + "block": 9, + "row": 1129 + }, + { + "path": "Modules/IO/src/meta/metaImage.h", + "sha256": "77a01759241743bbc46ffbdfed42a05a1212f77e5479bb7c811ff58d20098f0d", + "language": "C/C++", + "lines": 417, + "truncated": false, + "block": 9, + "row": 1758 + }, + { + "path": "Modules/IO/src/meta/metaImageTypes.h", + "sha256": "d378da80f7041dd259a99f938832d59405207098a0728f2547f2e985894f53fa", + "language": "C/C++", + "lines": 38, + "truncated": false, + "block": 9, + "row": 1208 + }, + { + "path": "Modules/IO/src/meta/metaImageUtils.h", + "sha256": "bd6fb997334872208b8ef66a3479d481182424370670c515f60e7ef7a9776b0f", + "language": "C/C++", + "lines": 45, + "truncated": false, + "block": 9, + "row": 1218 + }, + { + "path": "Modules/IO/src/meta/metaObject.h", + "sha256": "d180223c7f690ab0215159bf8beb553ead6cc1bfb9c7f3b427b01dbf8859e77a", + "language": "C/C++", + "lines": 383, + "truncated": false, + "block": 9, + "row": 1723 + }, + { + "path": "Modules/IO/src/meta/metaTypes.h", + "sha256": "081f48a91d8991ddf78286d4a71bd00e446fb0b0e820be25837bb7a580218734", + "language": "C/C++", + "lines": 206, + "truncated": false, + "block": 9, + "row": 1674 + }, + { + "path": "Modules/IO/src/meta/metaUtils.h", + "sha256": "f93ed222fc6dd7990b7c38e0f4c01cffc2fb74b01c78dd99ccbb4b959f3cd0a0", + "language": "C/C++", + "lines": 448, + "truncated": false, + "block": 9, + "row": 1734 + }, + { + "path": "Modules/IO/src/nifti/nifti1.h", + "sha256": "41acfb966a3033d9a19c62a099969ec2b1a285405827788a7e022efaf0e565ec", + "language": "C/C++", + "lines": 1501, + "truncated": false, + "block": 9, + "row": 1862 + }, + { + "path": "Modules/IO/src/nifti/nifti2.h", + "sha256": "2775dd424b8e20acbaf74c37624e7ba1065862f12fc3dc9b88beb2b694d3cb40", + "language": "C/C++", + "lines": 111, + "truncated": false, + "block": 9, + "row": 1624 + }, + { + "path": "Modules/IO/src/nifti/nifti2_io.cc", + "sha256": "2a45ae3f0e6a55f85a2c2525abfe226dcfaea32df3431772b91bfe9edeac54cf", + "language": "C++", + "lines": 5387, + "truncated": true, + "block": 9, + "row": 1107 + }, + { + "path": "Modules/IO/src/nifti/nifti2_io.h", + "sha256": "655c145e476b2c97d56958961d8f0e07bfee4655ca8f3e39554402fc4b2aad13", + "language": "C/C++", + "lines": 727, + "truncated": false, + "block": 9, + "row": 1830 + }, + { + "path": "Modules/IO/src/nifti/znzlib.cc", + "sha256": "255e40935ab0ff08861d8c65a23cb4292c6191ad361c48b0c0e3907cdb023358", + "language": "C++", + "lines": 330, + "truncated": false, + "block": 9, + "row": 685 + }, + { + "path": "Modules/IO/src/nifti/znzlib.h", + "sha256": "9e2fe37aa7761d3a7fbad8ff2f0a2bd25f81a2ad6ab265efe66ec6811b9ec460", + "language": "C/C++", + "lines": 117, + "truncated": false, + "block": 9, + "row": 1406 + }, + { + "path": "Modules/Image/include/mirtk/BSplineInterpolateImageFunction.h", + "sha256": "668581f284f1490d114e2b9528aa64c79527849b0654613a957e050614020b38", + "language": "C/C++", + "lines": 295, + "truncated": false, + "block": 9, + "row": 1738 + }, + { + "path": "Modules/Image/include/mirtk/BSplineInterpolateImageFunction2D.h", + "sha256": "e54245c2e1cf4ca4f96e516106ff2bc3a5a65bc3463f5c249ccd5ee90263d357", + "language": "C/C++", + "lines": 129, + "truncated": false, + "block": 9, + "row": 1564 + }, + { + "path": "Modules/Image/include/mirtk/BSplineInterpolateImageFunction3D.h", + "sha256": "fab0b6c1de5f0ab6750a27932997d8379ff809140c5d698da00063708c53b151", + "language": "C/C++", + "lines": 129, + "truncated": false, + "block": 9, + "row": 1561 + }, + { + "path": "Modules/Image/include/mirtk/BSplineInterpolateImageFunction4D.h", + "sha256": "d8175d3bab53067859722e5065f37dee0c51b3957586d2151adef9471c0c54e4", + "language": "C/C++", + "lines": 129, + "truncated": false, + "block": 9, + "row": 1551 + }, + { + "path": "Modules/Image/include/mirtk/BaseImage.h", + "sha256": "532d0e1f1aa081180a6d30bc07ed113709d4d1e6493a2a43f26d04f4e184907c", + "language": "C/C++", + "lines": 1808, + "truncated": false, + "block": 9, + "row": 1858 + }, + { + "path": "Modules/Image/include/mirtk/BinaryVoxelFunction.h", + "sha256": "eedae6e8a948f945f364e1d40383c7a8f25d57dda64cf072064e864527d1665e", + "language": "C/C++", + "lines": 380, + "truncated": false, + "block": 9, + "row": 1713 + }, + { + "path": "Modules/Image/include/mirtk/CSplineInterpolateImageFunction.h", + "sha256": "f153957faa3ca676aab3c702a144b44e2d896e7dc9336c76bcb2e2302764d5f5", + "language": "C/C++", + "lines": 259, + "truncated": false, + "block": 9, + "row": 1716 + }, + { + "path": "Modules/Image/include/mirtk/CSplineInterpolateImageFunction2D.h", + "sha256": "453a22013a9ffcb7265d6437fcdf637c209fd2ccddb8785ffe5db9cb4a4c60c7", + "language": "C/C++", + "lines": 127, + "truncated": false, + "block": 9, + "row": 1559 + }, + { + "path": "Modules/Image/include/mirtk/CSplineInterpolateImageFunction3D.h", + "sha256": "3141a9a71b79199471eed9cbc965486104eb5920f243e541cedf57c3209ae555", + "language": "C/C++", + "lines": 129, + "truncated": false, + "block": 9, + "row": 1558 + }, + { + "path": "Modules/Image/include/mirtk/CSplineInterpolateImageFunction4D.h", + "sha256": "d878c365798ba78f4ac4f39fc3e8faac77fb04e143599151523ef4b8e20b6055", + "language": "C/C++", + "lines": 127, + "truncated": false, + "block": 9, + "row": 1547 + }, + { + "path": "Modules/Image/include/mirtk/CityBlockDistanceTransform.h", + "sha256": "0bf3a5875f3c7b2a02866a11af324f48cc3bbee7ac5c39a66e3695ade435e76a", + "language": "C/C++", + "lines": 107, + "truncated": false, + "block": 9, + "row": 1416 + }, + { + "path": "Modules/Image/include/mirtk/Closing.h", + "sha256": "c401800189462c081d9d486d07f732d23170b129878b3d7d2c88229b362eb447", + "language": "C/C++", + "lines": 82, + "truncated": false, + "block": 9, + "row": 1291 + }, + { + "path": "Modules/Image/include/mirtk/ConnectedComponents.h", + "sha256": "4835a4c859f134dc2ce08afa874cfe9e6a089fd5795144b670b6268009c98671", + "language": "C/C++", + "lines": 159, + "truncated": false, + "block": 9, + "row": 1546 + }, + { + "path": "Modules/Image/include/mirtk/ConstExtrapolateImageFunction.h", + "sha256": "423a5904861bc8513e63936fd0b7c7d14d1a92fa255ba079626250949acc5bf1", + "language": "C/C++", + "lines": 99, + "truncated": false, + "block": 9, + "row": 1356 + }, + { + "path": "Modules/Image/include/mirtk/ConstExtrapolateImageFunctionWithPeriodicTime.h", + "sha256": "043d11bc2d9ca2482fa149b3dcbbd40d98144b88adb238b1219b6657c6bf6ec9", + "language": "C/C++", + "lines": 94, + "truncated": false, + "block": 9, + "row": 1398 + }, + { + "path": "Modules/Image/include/mirtk/ConstGenericImageIterator.h", + "sha256": "6dcd0c0c4848115067bb6ebede606563f9a9d735e7da72fac39917b7614cbccf", + "language": "C/C++", + "lines": 223, + "truncated": false, + "block": 9, + "row": 1655 + }, + { + "path": "Modules/Image/include/mirtk/ConstImageIterator.h", + "sha256": "aa6648c12ca3a1a075b7eb84ae3c9655b4f79fffbe3ce8acb4d72c12dff4c90b", + "language": "C/C++", + "lines": 1253, + "truncated": false, + "block": 9, + "row": 1844 + }, + { + "path": "Modules/Image/include/mirtk/ConvolutionFunction.h", + "sha256": "3b18a5d0218e6d554f1da5345038eff7b65805f783992c4818f3e5e631ab2dc6", + "language": "C/C++", + "lines": 1569, + "truncated": false, + "block": 9, + "row": 1857 + }, + { + "path": "Modules/Image/include/mirtk/CubicBSplineConvolution.h", + "sha256": "6acbc9386f4132f7df1ea2a8e182f2b1b8f5f859b117b5fc042bed3ab08c1c83", + "language": "C/C++", + "lines": 112, + "truncated": false, + "block": 9, + "row": 1412 + }, + { + "path": "Modules/Image/include/mirtk/CubicBSplineInterpolateImageFunction.h", + "sha256": "64fff7da7008dc9138dfe63a9681d4560bb355db4eb24bafacca251dfc40f369", + "language": "C/C++", + "lines": 305, + "truncated": false, + "block": 9, + "row": 1748 + }, + { + "path": "Modules/Image/include/mirtk/CubicBSplineInterpolateImageFunction2D.h", + "sha256": "5b00b8a93113afbf9117db724c4a5e4433af9e31b1b3fcc01a28d626907f7462", + "language": "C/C++", + "lines": 127, + "truncated": false, + "block": 9, + "row": 1571 + }, + { + "path": "Modules/Image/include/mirtk/CubicBSplineInterpolateImageFunction3D.h", + "sha256": "0ea93934ba398d2214c2e7bb6c019207a3efb33ad2fc7782922456eff92f8516", + "language": "C/C++", + "lines": 127, + "truncated": false, + "block": 9, + "row": 1567 + }, + { + "path": "Modules/Image/include/mirtk/CubicBSplineInterpolateImageFunction4D.h", + "sha256": "23ef781f8f154a80c613e5667b119f92570c3fc882e397dce2bf42cb52c0a794", + "language": "C/C++", + "lines": 127, + "truncated": false, + "block": 9, + "row": 1565 + }, + { + "path": "Modules/Image/include/mirtk/DataFunctions.h", + "sha256": "e459498ffc70d91da98ecebe0a26e33f4fca9de273c315f851182edfb90e8a61", + "language": "C/C++", + "lines": 1400, + "truncated": false, + "block": 9, + "row": 1843 + }, + { + "path": "Modules/Image/include/mirtk/DataOp.h", + "sha256": "9c22c30ed7a78e1b2ce5c98011dbc499529332429f3de90662605b09b5b38f15", + "language": "C/C++", + "lines": 258, + "truncated": false, + "block": 9, + "row": 1684 + }, + { + "path": "Modules/Image/include/mirtk/DataStatistics.h", + "sha256": "35f5e8cf40c5333497dec23ab572db1770719708ef9afd4c9d62507cfef68ee4", + "language": "C/C++", + "lines": 1504, + "truncated": false, + "block": 9, + "row": 1841 + }, + { + "path": "Modules/Image/include/mirtk/DifferenceOfCompositionLieBracketImageFilter3D.h", + "sha256": "15eed952548726667e1bb0a3b7cf35a4cebad6fc965a89982407adda129a6db0", + "language": "C/C++", + "lines": 90, + "truncated": false, + "block": 9, + "row": 1379 + }, + { + "path": "Modules/Image/include/mirtk/Dilation.h", + "sha256": "fad0653665c0014d26a563755ceb96a4284ddebe27ea9f4ce6ec4bdf3adb2d08", + "language": "C/C++", + "lines": 80, + "truncated": false, + "block": 9, + "row": 1289 + }, + { + "path": "Modules/Image/include/mirtk/DisplacementFieldExp.h", + "sha256": "b5d7f905d60c0a29963bce96d04bcd7ebcca5ac55d5f908d7680986bf7e01952", + "language": "C/C++", + "lines": 43, + "truncated": false, + "block": 9, + "row": 1186 + }, + { + "path": "Modules/Image/include/mirtk/DisplacementToVelocityField.h", + "sha256": "99558f363a601cf368984886ea1b857ea63ff94a3d5052d1dd0f25d81e0a7a92", + "language": "C/C++", + "lines": 72, + "truncated": false, + "block": 9, + "row": 1284 + }, + { + "path": "Modules/Image/include/mirtk/DisplacementToVelocityFieldBCH.h", + "sha256": "29f534813191c3b3f3f4a046ebf9e11e1aeda69af05105eb0113cd4169abc5c6", + "language": "C/C++", + "lines": 143, + "truncated": false, + "block": 9, + "row": 1506 + }, + { + "path": "Modules/Image/include/mirtk/Downsampling.h", + "sha256": "20aceda8ef6455d27fa4fa9078e358c50a895c8400bee20793642e908b16f560", + "language": "C/C++", + "lines": 91, + "truncated": false, + "block": 9, + "row": 1337 + }, + { + "path": "Modules/Image/include/mirtk/Erosion.h", + "sha256": "4f7ca580ecc84eaca8f3a4c036365c97a67e95207cc6cd1b94051bed8e35c053", + "language": "C/C++", + "lines": 80, + "truncated": false, + "block": 9, + "row": 1287 + }, + { + "path": "Modules/Image/include/mirtk/EuclideanDistanceTransform.h", + "sha256": "e7d4f295b55e02b8b09ccc82882f37a0d4530ab46402b64a325885d1b74240b7", + "language": "C/C++", + "lines": 82, + "truncated": false, + "block": 9, + "row": 1314 + }, + { + "path": "Modules/Image/include/mirtk/ExtrapolateImageFunction.h", + "sha256": "53b3f43672c9d0d678842f2e17640f83802f3bde9fa43f5444e9a635c5d85818", + "language": "C/C++", + "lines": 793, + "truncated": false, + "block": 9, + "row": 1815 + }, + { + "path": "Modules/Image/include/mirtk/ExtrapolationMode.h", + "sha256": "98c4c499b91a41efd413c9254c06e37e6039a9ca26a251136702d25dc4f3c55f", + "language": "C/C++", + "lines": 104, + "truncated": false, + "block": 9, + "row": 1473 + }, + { + "path": "Modules/Image/include/mirtk/FastCubicBSplineInterpolateImageFunction.h", + "sha256": "9dee54de94cdce63f59a6348ad73e499031a73cb14571edfb3b76771d046f123", + "language": "C/C++", + "lines": 379, + "truncated": false, + "block": 9, + "row": 1776 + }, + { + "path": "Modules/Image/include/mirtk/FastCubicBSplineInterpolateImageFunction2D.h", + "sha256": "d5568f055f5cc0fb00a2c02980714313f433792589627e5cf5583e4f65fbc4b4", + "language": "C/C++", + "lines": 128, + "truncated": false, + "block": 9, + "row": 1575 + }, + { + "path": "Modules/Image/include/mirtk/FastCubicBSplineInterpolateImageFunction3D.h", + "sha256": "753e5e754fc465e96a737053f242dfa8ffe34eb76fea3409f51db66a8ca4000c", + "language": "C/C++", + "lines": 127, + "truncated": false, + "block": 9, + "row": 1573 + }, + { + "path": "Modules/Image/include/mirtk/FastCubicBSplineInterpolateImageFunction4D.h", + "sha256": "f83eb4afa34f1e6e7e7881270f2a0c43d0c211bfa423d8fc988d860ba5d6298d", + "language": "C/C++", + "lines": 127, + "truncated": false, + "block": 9, + "row": 1570 + }, + { + "path": "Modules/Image/include/mirtk/FastLinearImageGradientFunction.h", + "sha256": "01f1ab6ffc416c3030e1e8b307edb963a494b59c88731032f17a8c8e0678e0eb", + "language": "C/C++", + "lines": 273, + "truncated": false, + "block": 9, + "row": 1727 + }, + { + "path": "Modules/Image/include/mirtk/FastLinearImageGradientFunction2D.h", + "sha256": "839f1b85a08e974e4a539b8bc41002d8adb35dc808884c93d72b59c24ce7992e", + "language": "C/C++", + "lines": 128, + "truncated": false, + "block": 9, + "row": 1562 + }, + { + "path": "Modules/Image/include/mirtk/FastLinearImageGradientFunction3D.h", + "sha256": "ab3faa39f3251c5fc9771c71e2db2b8cf2c11329cc0f8002661c91704cfc70fa", + "language": "C/C++", + "lines": 129, + "truncated": false, + "block": 9, + "row": 1566 + }, + { + "path": "Modules/Image/include/mirtk/ForEachBinaryVoxelFunction.h", + "sha256": "b08cd8e0b189bb18f9fdb48b0c8794a14ed5a7cfd5280afb0a3ae8f55c502f9a", + "language": "C/C++", + "lines": 4539, + "truncated": true, + "block": 9, + "row": 1875 + }, + { + "path": "Modules/Image/include/mirtk/ForEachNonaryVoxelFunction.h", + "sha256": "8e26be456e89c672bb25935806b6344fa5f939383881d5a456f8b28b50260edf", + "language": "C/C++", + "lines": 2768, + "truncated": true, + "block": 9, + "row": 1874 + }, + { + "path": "Modules/Image/include/mirtk/ForEachOctaryVoxelFunction.h", + "sha256": "42f552c6ff81983ba7f33c2adf17f7e3d6ada272168c33a489d7de9fa5725fdc", + "language": "C/C++", + "lines": 2908, + "truncated": true, + "block": 9, + "row": 1871 + }, + { + "path": "Modules/Image/include/mirtk/ForEachQuaternaryVoxelFunction.h", + "sha256": "1679f1e23c627be843b3aee61985a856285cac98a378a2e9e7d00c6db2f3b708", + "language": "C/C++", + "lines": 3794, + "truncated": true, + "block": 9, + "row": 1870 + }, + { + "path": "Modules/Image/include/mirtk/ForEachQuinaryVoxelFunction.h", + "sha256": "b4c9fa950aaa4d4fa3859ae949fb437e7764786f856ebc35feea09508f1fab5a", + "language": "C/C++", + "lines": 3531, + "truncated": true, + "block": 9, + "row": 1876 + }, + { + "path": "Modules/Image/include/mirtk/ForEachSenaryVoxelFunction.h", + "sha256": "61da84d8508b925f7a5a41390328ba6f9845fdf364e7a25c4317be3372715b50", + "language": "C/C++", + "lines": 3272, + "truncated": true, + "block": 9, + "row": 1872 + }, + { + "path": "Modules/Image/include/mirtk/ForEachSeptenaryVoxelFunction.h", + "sha256": "f129d83185d6b86afba6b3fd333cd4a3217674763729b3245a145467ae64f68b", + "language": "C/C++", + "lines": 3066, + "truncated": true, + "block": 9, + "row": 1877 + }, + { + "path": "Modules/Image/include/mirtk/ForEachTernaryVoxelFunction.h", + "sha256": "f512bd8c15aefba5372c6f8a7a1403352bff5857c05cbc88e3ffa0173230309a", + "language": "C/C++", + "lines": 4121, + "truncated": true, + "block": 9, + "row": 1878 + }, + { + "path": "Modules/Image/include/mirtk/ForEachUnaryVoxelFunction.h", + "sha256": "5632e97425f4fda5614af59a7214c7b7e8f6be2b3babc2b6ca71e995a70f2469", + "language": "C/C++", + "lines": 3247, + "truncated": false, + "block": 9, + "row": 1869 + }, + { + "path": "Modules/Image/include/mirtk/GaussianBlurring.h", + "sha256": "84e636e2695a21b7abf96ea8f071eb5925b7c213a600a847e02abe496600d6f0", + "language": "C/C++", + "lines": 107, + "truncated": false, + "block": 9, + "row": 1420 + }, + { + "path": "Modules/Image/include/mirtk/GaussianBlurring2D.h", + "sha256": "5d4b4ad3703f41136be6a58be1b857ab1ef764127f435d826b0aa66ed3ed51b1", + "language": "C/C++", + "lines": 59, + "truncated": false, + "block": 9, + "row": 1224 + }, + { + "path": "Modules/Image/include/mirtk/GaussianBlurring4D.h", + "sha256": "f795d759bea00f6ba98287d70d5fa0d8e09a15d22c2a02a74cac858036b6790a", + "language": "C/C++", + "lines": 58, + "truncated": false, + "block": 9, + "row": 1221 + }, + { + "path": "Modules/Image/include/mirtk/GaussianBlurringWithPadding.h", + "sha256": "6b5997932068a7bd16f3b826ffcacdd2df8643601cec79a6e7dd31cc3b643619", + "language": "C/C++", + "lines": 63, + "truncated": false, + "block": 9, + "row": 1278 + }, + { + "path": "Modules/Image/include/mirtk/GaussianBlurringWithPadding2D.h", + "sha256": "3943158ec777bae5c8cf4ff0869ea6abfdb431a33c8c844e31420ae32742d3bf", + "language": "C/C++", + "lines": 58, + "truncated": false, + "block": 9, + "row": 1262 + }, + { + "path": "Modules/Image/include/mirtk/GaussianInterpolateImageFunction.h", + "sha256": "bdb0b24046967f343a7991904651855721960e4f2c798a0a6aa2be9e59b8dc31", + "language": "C/C++", + "lines": 292, + "truncated": false, + "block": 9, + "row": 1732 + }, + { + "path": "Modules/Image/include/mirtk/GaussianInterpolateImageFunction2D.h", + "sha256": "32efa98cf406f68fb94643b124ef251a79e683a23da94d71d035c40695430d41", + "language": "C/C++", + "lines": 132, + "truncated": false, + "block": 9, + "row": 1574 + }, + { + "path": "Modules/Image/include/mirtk/GaussianInterpolateImageFunction3D.h", + "sha256": "73548d3470873bc0793f611790327ea5f8055d86d7c9a0165b2a4f1a1bb41428", + "language": "C/C++", + "lines": 132, + "truncated": false, + "block": 9, + "row": 1572 + }, + { + "path": "Modules/Image/include/mirtk/GaussianInterpolateImageFunction4D.h", + "sha256": "d823b6c2296a4baa6b5d8640cbebb039f9a71bb6b8cf3dcc7395aa971824b8f6", + "language": "C/C++", + "lines": 133, + "truncated": false, + "block": 9, + "row": 1569 + }, + { + "path": "Modules/Image/include/mirtk/GaussianPyramidFilter.h", + "sha256": "ab7e59de89f8bd1eac5e38611dad9cfc84712d0b034b0652c859274901d53bd3", + "language": "C/C++", + "lines": 71, + "truncated": false, + "block": 9, + "row": 1243 + }, + { + "path": "Modules/Image/include/mirtk/GenericImage.h", + "sha256": "cb91635c7f6be44669f9df1a7d222c17b6f101325e2f6f48cf7904364421a03c", + "language": "C/C++", + "lines": 1014, + "truncated": false, + "block": 9, + "row": 1829 + }, + { + "path": "Modules/Image/include/mirtk/GenericImageIterator.h", + "sha256": "7b3084ef11aab36b4a6ffecc202dbf03018d39276f5d5e178cd81d55bb544bc2", + "language": "C/C++", + "lines": 222, + "truncated": false, + "block": 9, + "row": 1648 + }, + { + "path": "Modules/Image/include/mirtk/GradientImageFilter.h", + "sha256": "49fc930c4bfd9739ed03289c5a41fb15c548e4c57bbf8523945e3160eab6ded2", + "language": "C/C++", + "lines": 108, + "truncated": false, + "block": 9, + "row": 1424 + }, + { + "path": "Modules/Image/include/mirtk/HashImage.h", + "sha256": "45f8e600dd377a58d6b71137ce0e3feeabee13292f65cef2dbd864fe1fe968c8", + "language": "C/C++", + "lines": 768, + "truncated": false, + "block": 9, + "row": 1809 + }, + { + "path": "Modules/Image/include/mirtk/HessianImageFilter.h", + "sha256": "30946beffe1ce81d87a76b6754e78a39e1ea546f35f27a59a460e4062bae30eb", + "language": "C/C++", + "lines": 95, + "truncated": false, + "block": 9, + "row": 1343 + }, + { + "path": "Modules/Image/include/mirtk/Histogram1D.h", + "sha256": "ab1bd8082e56c03394b3bac3b78761e9f1bf14767d70a551f4f9b4f1f707f247", + "language": "C/C++", + "lines": 454, + "truncated": false, + "block": 9, + "row": 1730 + }, + { + "path": "Modules/Image/include/mirtk/Histogram2D.h", + "sha256": "f0d52d5ce0d18f8d53bb44ff1554fe8e4b134fa43452261248aa3ece5b1bc990", + "language": "C/C++", + "lines": 578, + "truncated": false, + "block": 9, + "row": 1767 + }, + { + "path": "Modules/Image/include/mirtk/HistogramMatching.h", + "sha256": "def7093e6fb7c3c74453e14fba5e701c628d9440991856a127b837c46fcc1f16", + "language": "C/C++", + "lines": 72, + "truncated": false, + "block": 9, + "row": 1298 + }, + { + "path": "Modules/Image/include/mirtk/Image.h", + "sha256": "181a2a4962a9ff2a26c69e8b4a2573f4dcf9bcc1ef0183d5f6bf2b74f0550e81", + "language": "C/C++", + "lines": 44, + "truncated": false, + "block": 9, + "row": 1190 + }, + { + "path": "Modules/Image/include/mirtk/ImageAttributes.h", + "sha256": "a3660e078ce7c96d294791cf85cff92a5db1e37dc29a05414828801a867e686e", + "language": "C/C++", + "lines": 694, + "truncated": false, + "block": 9, + "row": 1801 + }, + { + "path": "Modules/Image/include/mirtk/ImageFunction.h", + "sha256": "7eee4bd8a431f6afc7764bc3837b4d5f2b696270855c5dc8e8512f3cddbb65f7", + "language": "C/C++", + "lines": 83, + "truncated": false, + "block": 9, + "row": 1328 + }, + { + "path": "Modules/Image/include/mirtk/ImageGradientFunction.h", + "sha256": "f4212da063466a5738137585dc8870fdbb759332a061bc6fec3317424dbd5b3e", + "language": "C/C++", + "lines": 832, + "truncated": false, + "block": 9, + "row": 1828 + }, + { + "path": "Modules/Image/include/mirtk/ImageIterator.h", + "sha256": "9047d1ded77340a54ec3bc3b5fe127b85f1e662686ae8a0ef7deddb2c83431d5", + "language": "C/C++", + "lines": 223, + "truncated": false, + "block": 9, + "row": 1643 + }, + { + "path": "Modules/Image/include/mirtk/ImageReader.h", + "sha256": "418fd9aff77664e500d6824f2a4e6ba931b17fb762d6e130e00569736354bdff", + "language": "C/C++", + "lines": 132, + "truncated": false, + "block": 9, + "row": 1476 + }, + { + "path": "Modules/Image/include/mirtk/ImageReaderFactory.h", + "sha256": "eeba2a69bf81bc1f9262bcac71ef66d4112a983175e8b56e9dfea584045fe0d8", + "language": "C/C++", + "lines": 114, + "truncated": false, + "block": 9, + "row": 1457 + }, + { + "path": "Modules/Image/include/mirtk/ImageRegion.h", + "sha256": "fd8c00b2616d2aa9ddd25960e45d12412d58c2773cd8948064cd64090a51511b", + "language": "C/C++", + "lines": 1155, + "truncated": false, + "block": 9, + "row": 1845 + }, + { + "path": "Modules/Image/include/mirtk/ImageSequence.h", + "sha256": "efcf12199f3052e2d939e4bb24b15bdcf5296ad25227e8ff3052a67d6741b932", + "language": "C/C++", + "lines": 471, + "truncated": false, + "block": 9, + "row": 1763 + }, + { + "path": "Modules/Image/include/mirtk/ImageToImage.h", + "sha256": "38da1d9424688b0288bd8b3837c0a3928b5926246c6d3eee0b48510b9a59a2f5", + "language": "C/C++", + "lines": 156, + "truncated": false, + "block": 9, + "row": 1602 + }, + { + "path": "Modules/Image/include/mirtk/ImageToInterpolationCoefficients.h", + "sha256": "c3f1deab3c67a4db361be6c319f5a4aab30bed0eb5c974461c1d0006f9cab4ff", + "language": "C/C++", + "lines": 506, + "truncated": false, + "block": 9, + "row": 1781 + }, + { + "path": "Modules/Image/include/mirtk/ImageWriter.h", + "sha256": "527119cbe1000ce1b9d6191c640e31a40bd7d3f0246a99d60eca937c60650f74", + "language": "C/C++", + "lines": 100, + "truncated": false, + "block": 9, + "row": 1355 + }, + { + "path": "Modules/Image/include/mirtk/ImageWriterFactory.h", + "sha256": "1991c85bf96e61f95551fd4c4c966cadb670abad467c5d64bce8021a780c281f", + "language": "C/C++", + "lines": 117, + "truncated": false, + "block": 9, + "row": 1462 + }, + { + "path": "Modules/Image/include/mirtk/InterpolateImageFunction.h", + "sha256": "13ada17cc0bf23dcfc6b88a4875a1ecc8da554d9bddaca4dc4e008d2004aa201", + "language": "C/C++", + "lines": 1472, + "truncated": false, + "block": 9, + "row": 1860 + }, + { + "path": "Modules/Image/include/mirtk/InterpolationMode.h", + "sha256": "89bda63c86898d1fad46d6809b3cf0b33a2d2347b5d0977ea5f42f330286b620", + "language": "C/C++", + "lines": 192, + "truncated": false, + "block": 9, + "row": 1656 + }, + { + "path": "Modules/Image/include/mirtk/LieBracketImageFilter.h", + "sha256": "e03bd0dd276b65b2d78e984d6207bb95615de28ff7be2296b61945f33104dbd8", + "language": "C/C++", + "lines": 212, + "truncated": false, + "block": 9, + "row": 1619 + }, + { + "path": "Modules/Image/include/mirtk/LieBracketImageFilter2D.h", + "sha256": "4deb0086191eb45d93dc8dc8a379ff43b4e85f58bc053c3b0b4d1634458536ea", + "language": "C/C++", + "lines": 258, + "truncated": false, + "block": 9, + "row": 1646 + }, + { + "path": "Modules/Image/include/mirtk/LieBracketImageFilter3D.h", + "sha256": "82e83958039125f46a175299ddb68d43a8f463376cbf667ae3bf1f1c1e2c2b12", + "language": "C/C++", + "lines": 295, + "truncated": false, + "block": 9, + "row": 1677 + }, + { + "path": "Modules/Image/include/mirtk/LinearImageGradientFunction.h", + "sha256": "57d05488788aa43d3efefb5c7fd99a7c5afe4440962fb47ca03a0f4383f659ab", + "language": "C/C++", + "lines": 129, + "truncated": false, + "block": 9, + "row": 1512 + }, + { + "path": "Modules/Image/include/mirtk/LinearImageGradientFunction2D.h", + "sha256": "77398b317de408d9583b5e2dea85fedc96620382a111dffbe0f0c0163271a608", + "language": "C/C++", + "lines": 84, + "truncated": false, + "block": 9, + "row": 1358 + }, + { + "path": "Modules/Image/include/mirtk/LinearImageGradientFunction3D.h", + "sha256": "32d27d6b5c24c0f54915e09c0bf42a3b75fd64917a65bc16760e08067e9301b9", + "language": "C/C++", + "lines": 83, + "truncated": false, + "block": 9, + "row": 1359 + }, + { + "path": "Modules/Image/include/mirtk/LinearInterpolateImageFunction.h", + "sha256": "184b5b575482d795aa47d7046fd3bb42f582dfc6413777e37f49a544ea57c659", + "language": "C/C++", + "lines": 420, + "truncated": false, + "block": 9, + "row": 1790 + }, + { + "path": "Modules/Image/include/mirtk/LinearInterpolateImageFunction2D.h", + "sha256": "826b1d111a688c2cbec8e66a70fed09df1c62d16a0045a00a0a565ca4f01da95", + "language": "C/C++", + "lines": 129, + "truncated": false, + "block": 9, + "row": 1560 + }, + { + "path": "Modules/Image/include/mirtk/LinearInterpolateImageFunction3D.h", + "sha256": "d94f3bee31bc026464b51a07fababe2e7d966094356550dfee6471684d37ffa8", + "language": "C/C++", + "lines": 129, + "truncated": false, + "block": 9, + "row": 1553 + }, + { + "path": "Modules/Image/include/mirtk/LinearInterpolateImageFunction4D.h", + "sha256": "e7f63cec66a4ca502ed30db21fbdcfa428f336b6d0159b40b92525654c24171f", + "language": "C/C++", + "lines": 129, + "truncated": false, + "block": 9, + "row": 1548 + }, + { + "path": "Modules/Image/include/mirtk/MirrorExtrapolateImageFunction.h", + "sha256": "fa5c9ffd95541c6459f93a4e064b2b6949c3d9c579e79e2a413a846f063a88be", + "language": "C/C++", + "lines": 101, + "truncated": false, + "block": 9, + "row": 1349 + }, + { + "path": "Modules/Image/include/mirtk/NaryVoxelFunction.h", + "sha256": "ff20cb4c49558710ab98b90736890c6c5133dca2f9487764d75fa3896fd55253", + "language": "C/C++", + "lines": 284, + "truncated": false, + "block": 9, + "row": 1703 + }, + { + "path": "Modules/Image/include/mirtk/NearestNeighborExtrapolateImageFunction.h", + "sha256": "ddc10b55035efcff12f60e37fcdc885f00da76d5b3fab3818d62dadab904bb39", + "language": "C/C++", + "lines": 89, + "truncated": false, + "block": 9, + "row": 1332 + }, + { + "path": "Modules/Image/include/mirtk/NearestNeighborInterpolateImageFunction.h", + "sha256": "70fde49f0209f359fe22f053ad3edd8deece4770ddf82c8ccfd12ae99c9ad896", + "language": "C/C++", + "lines": 147, + "truncated": false, + "block": 9, + "row": 1597 + }, + { + "path": "Modules/Image/include/mirtk/NeighborhoodOffsets.h", + "sha256": "dc79a39159c774fc674d9928bd19685099ccaba230a3ac668c1b5f60c62b3972", + "language": "C/C++", + "lines": 135, + "truncated": false, + "block": 9, + "row": 1469 + }, + { + "path": "Modules/Image/include/mirtk/RepeatExtrapolateImageFunction.h", + "sha256": "74ac640e95d448d9511ee1ffe43c6cb1beca207b9849caa5aa0f288235a6c50a", + "language": "C/C++", + "lines": 104, + "truncated": false, + "block": 9, + "row": 1381 + }, + { + "path": "Modules/Image/include/mirtk/Resampling.h", + "sha256": "897375817683ffca337c18b2ab56e2fd5961b2838c512d5a815c0ba6deaf3a7b", + "language": "C/C++", + "lines": 104, + "truncated": false, + "block": 9, + "row": 1391 + }, + { + "path": "Modules/Image/include/mirtk/ResamplingWithPadding.h", + "sha256": "6926c2ec10ed83bd67fc8fd0073eef708f38c83891f0ecb92fdf81e8b8323630", + "language": "C/C++", + "lines": 81, + "truncated": false, + "block": 9, + "row": 1310 + }, + { + "path": "Modules/Image/include/mirtk/ScalarFunctionToImage.h", + "sha256": "fdcb66fbdeffc65a1ee4d892b7959c4834607b7d95f0b3cfc3942d20d2b68fe3", + "language": "C/C++", + "lines": 78, + "truncated": false, + "block": 9, + "row": 1312 + }, + { + "path": "Modules/Image/include/mirtk/ScalingAndSquaring.h", + "sha256": "4723acca3f33ebcd72cd9ef71dd8761e7910990724eacb2410dbeedaa5d8cf0b", + "language": "C/C++", + "lines": 234, + "truncated": false, + "block": 9, + "row": 1679 + }, + { + "path": "Modules/Image/include/mirtk/SeparableConvolution.h", + "sha256": "d5710573d9020419cb9744a79bb87cc92a6d09d01410d7123d9c9c25a2c67a75", + "language": "C/C++", + "lines": 151, + "truncated": false, + "block": 9, + "row": 1525 + }, + { + "path": "Modules/Image/include/mirtk/ShapeBasedInterpolateImageFunction.h", + "sha256": "9942c11598050d211f41f698c066d89aa08527b04a4888b06d824b7e4bbf40aa", + "language": "C/C++", + "lines": 232, + "truncated": false, + "block": 9, + "row": 1688 + }, + { + "path": "Modules/Image/include/mirtk/SincInterpolateImageFunction.h", + "sha256": "6499b823ea175304643896c247b22498f284d8be58b7238e5d1aa57e189ba1aa", + "language": "C/C++", + "lines": 270, + "truncated": false, + "block": 9, + "row": 1720 + }, + { + "path": "Modules/Image/include/mirtk/SincInterpolateImageFunction2D.h", + "sha256": "7888d057f6a8df802736bdd5e429fed2ae2abf30bcbc75575886a557c890156c", + "language": "C/C++", + "lines": 129, + "truncated": false, + "block": 9, + "row": 1556 + }, + { + "path": "Modules/Image/include/mirtk/SincInterpolateImageFunction3D.h", + "sha256": "054079631c0919c7ade546d9e70dfd8f1fc7c3ba1096201d14a50727b6ae6070", + "language": "C/C++", + "lines": 129, + "truncated": false, + "block": 9, + "row": 1549 + }, + { + "path": "Modules/Image/include/mirtk/SincInterpolateImageFunction4D.h", + "sha256": "cc5e5662bbf616a5442b829bbd21e046400a1b513ddc8f65f37fc68ddd2c567b", + "language": "C/C++", + "lines": 129, + "truncated": false, + "block": 9, + "row": 1543 + }, + { + "path": "Modules/Image/include/mirtk/TernaryVoxelFunction.h", + "sha256": "368912334331843d8bad561f8b54c2fab231ecb94a009b128e369f9d0f5210c2", + "language": "C/C++", + "lines": 159, + "truncated": false, + "block": 9, + "row": 1535 + }, + { + "path": "Modules/Image/include/mirtk/UnaryVoxelFunction.h", + "sha256": "85ef4b7858c61207438b53fbf5f0cb5463710f51ad7fe8ebbce18a8e66ada641", + "language": "C/C++", + "lines": 525, + "truncated": false, + "block": 9, + "row": 1762 + }, + { + "path": "Modules/Image/include/mirtk/VelocityFieldExp.h", + "sha256": "c959d54a8f6a3d573e9ae50342266dbfe2bfa9f65e18c17a7c3b301283f9ea4f", + "language": "C/C++", + "lines": 43, + "truncated": false, + "block": 9, + "row": 1181 + }, + { + "path": "Modules/Image/include/mirtk/VelocityToDisplacementField.h", + "sha256": "58b9dca8188b0c30d0c55c0bc76e4dc1b6c337d1ddb7dc741400d2a06a430482", + "language": "C/C++", + "lines": 103, + "truncated": false, + "block": 9, + "row": 1426 + }, + { + "path": "Modules/Image/include/mirtk/VelocityToDisplacementFieldEuler.h", + "sha256": "71bf2c6e74e7d147d371fbbc246968a024c63763294b1064b2dc3f6cbe17e423", + "language": "C/C++", + "lines": 69, + "truncated": false, + "block": 9, + "row": 1266 + }, + { + "path": "Modules/Image/include/mirtk/VelocityToDisplacementFieldSS.h", + "sha256": "ff34b309f073eecb362eee962a98173e06315105603f14e7c6585dafb64e246e", + "language": "C/C++", + "lines": 106, + "truncated": false, + "block": 9, + "row": 1441 + }, + { + "path": "Modules/Image/include/mirtk/Voxel.h", + "sha256": "3599e2783f51e0792377242a888ed14d49b069f4314b402ef45b45507306713f", + "language": "C/C++", + "lines": 760, + "truncated": false, + "block": 9, + "row": 1818 + }, + { + "path": "Modules/Image/include/mirtk/VoxelCast.h", + "sha256": "9b809b0034a5291ac12e7bac2d27ff328c61f69c04a29c5eabe5ffc0ef9c4889", + "language": "C/C++", + "lines": 1338, + "truncated": false, + "block": 9, + "row": 1837 + }, + { + "path": "Modules/Image/include/mirtk/VoxelDomain.h", + "sha256": "8084a7b160831ce1effe746ba07b679cdb8a925b9b6f053df77864a0f1d2d8d5", + "language": "C/C++", + "lines": 277, + "truncated": false, + "block": 9, + "row": 1693 + }, + { + "path": "Modules/Image/include/mirtk/VoxelFunction.h", + "sha256": "8869bcf98248041098bf6d072fe97993a04833f7d17e5749c5bfbc1bff3cd6b4", + "language": "C/C++", + "lines": 342, + "truncated": false, + "block": 9, + "row": 1736 + }, + { + "path": "Modules/Image/src/BaseImage.cc", + "sha256": "f3c5cd014421642b9bd8c464ac7bf9440d921e3c098d1b41d3ed2ceed5531650", + "language": "C++", + "lines": 1022, + "truncated": false, + "block": 9, + "row": 999 + }, + { + "path": "Modules/Image/src/CityBlockDistanceTransform.cc", + "sha256": "1f701e9a38ab620e726db378d6ded684061678966d1cb389a959db10470b1b6e", + "language": "C++", + "lines": 384, + "truncated": false, + "block": 9, + "row": 791 + }, + { + "path": "Modules/Image/src/Closing.cc", + "sha256": "5641423cf0e6ddbb3abc179fd3b6f2189f6d12bb05b79cfe2a2d9d7dd8c20119", + "language": "C++", + "lines": 139, + "truncated": false, + "block": 9, + "row": 486 + }, + { + "path": "Modules/Image/src/ConnectedComponents.cc", + "sha256": "b2d97e8dfdeb7a9ce047957fdb3b2d6b0f1df8dca28cc0f3feff6e6b94a704bd", + "language": "C++", + "lines": 224, + "truncated": false, + "block": 9, + "row": 660 + }, + { + "path": "Modules/Image/src/CubicBSplineConvolution.cc", + "sha256": "86b6ab0a2d27d823ce95c22d31b65c46773d42850906d0fcabaa8f8d578d2bdb", + "language": "C++", + "lines": 142, + "truncated": false, + "block": 9, + "row": 510 + }, + { + "path": "Modules/Image/src/DataOp.cc", + "sha256": "e780dd47ea01bab6f1499577cc51cbde464d0b0432c599348b64ef21b4a98360", + "language": "C++", + "lines": 247, + "truncated": false, + "block": 9, + "row": 708 + }, + { + "path": "Modules/Image/src/DifferenceOfCompositionLieBracketImageFilter3D.cc", + "sha256": "46da42cedf88e3afe6569ef56faf22770f9c4a71c69db2e22ed527d27bca2e92", + "language": "C++", + "lines": 476, + "truncated": false, + "block": 9, + "row": 913 + }, + { + "path": "Modules/Image/src/Dilation.cc", + "sha256": "daa4025497582c17e6169c84e8c2a034cff8ed75ed3d2b3448d40d49a919960f", + "language": "C++", + "lines": 80, + "truncated": false, + "block": 9, + "row": 339 + }, + { + "path": "Modules/Image/src/DisplacementToVelocityFieldBCH.cc", + "sha256": "5ffb0671cbc9910b586f31a14b22c969023cbe25f33cb9516e0f0447510c7639", + "language": "C++", + "lines": 223, + "truncated": false, + "block": 9, + "row": 673 + }, + { + "path": "Modules/Image/src/Downsampling.cc", + "sha256": "d6a23e976e4cce671b5b106748715a68c344c82d589b9802de3223c1be99b856", + "language": "C++", + "lines": 194, + "truncated": false, + "block": 9, + "row": 610 + }, + { + "path": "Modules/Image/src/Erosion.cc", + "sha256": "59aa87e566be792748408484b147084cbba2aa4855ec2ad1df49c6e4a827da9d", + "language": "C++", + "lines": 80, + "truncated": false, + "block": 9, + "row": 338 + }, + { + "path": "Modules/Image/src/EuclideanDistanceTransform.cc", + "sha256": "61c074a6b6dd087911593299263cdb89807db33d5b877af981850ddcb61e9812", + "language": "C++", + "lines": 756, + "truncated": false, + "block": 9, + "row": 948 + }, + { + "path": "Modules/Image/src/ExtrapolateImageFunction.cc", + "sha256": "0d1e4c29e9c03e3bf2d1075e2d67262a8cf7d8ea2b160945e3740533db59f7a3", + "language": "C++", + "lines": 65, + "truncated": false, + "block": 9, + "row": 318 + }, + { + "path": "Modules/Image/src/ForEachVoxelFunction.py", + "sha256": "1e96db7568631c4c9f93b6001a1ade96bdbe2cae6cdcce7c22388c5493e24f1d", + "language": "Python", + "lines": 1841, + "truncated": false, + "block": 9, + "row": 12581 + }, + { + "path": "Modules/Image/src/GaussianBlurring.cc", + "sha256": "c2ecbbc6186d643b247ab180e0a0d9459c08cb521fc5495fb4580de34bf7e35c", + "language": "C++", + "lines": 149, + "truncated": false, + "block": 9, + "row": 524 + }, + { + "path": "Modules/Image/src/GaussianBlurring2D.cc", + "sha256": "9afae0b932beefcff77c5aafcc2ce39d1a1ae3011d4ebe2e55b3585f16ad7f9c", + "language": "C++", + "lines": 64, + "truncated": false, + "block": 9, + "row": 290 + }, + { + "path": "Modules/Image/src/GaussianBlurring4D.cc", + "sha256": "ae4f1d96996ecff81ab09edb5095fcea527571b4104453012923a631e6e0fdc0", + "language": "C++", + "lines": 65, + "truncated": false, + "block": 9, + "row": 297 + }, + { + "path": "Modules/Image/src/GaussianBlurringWithPadding.cc", + "sha256": "b1acfcc289ef35f8cc711d33fc5869e2c24a5862698f7de14143ac614347bc25", + "language": "C++", + "lines": 78, + "truncated": false, + "block": 9, + "row": 377 + }, + { + "path": "Modules/Image/src/GaussianBlurringWithPadding2D.cc", + "sha256": "fd122e5b328767bde793e61010450814bd6b7e01bd8edaeca4be0a4bd315d183", + "language": "C++", + "lines": 60, + "truncated": false, + "block": 9, + "row": 299 + }, + { + "path": "Modules/Image/src/GaussianPyramidFilter.cc", + "sha256": "9430765c79e97de1c3709c18790c496ca5f5ee882602ba70d9f8780dd16b31b2", + "language": "C++", + "lines": 217, + "truncated": false, + "block": 9, + "row": 638 + }, + { + "path": "Modules/Image/src/GenericImage.cc", + "sha256": "a629662e6db928bbd7be67b3b0d18e833a968ab97676894bccf6073a02353881", + "language": "C++", + "lines": 2295, + "truncated": false, + "block": 9, + "row": 1085 + }, + { + "path": "Modules/Image/src/GradientImageFilter.cc", + "sha256": "5f9ac6bbf949d27271a773f53eac49ee2b876ab9dbcdc1028a2682836cc93b10", + "language": "C++", + "lines": 321, + "truncated": false, + "block": 9, + "row": 758 + }, + { + "path": "Modules/Image/src/HashImage.cc", + "sha256": "259942f50f62c497c6d6e08a0a56bf9d07a74be674a03f766d249c3e142a2314", + "language": "C++", + "lines": 1828, + "truncated": false, + "block": 9, + "row": 1086 + }, + { + "path": "Modules/Image/src/HessianImageFilter.cc", + "sha256": "794e9390d76b568c97c0637e127ca6c593f4f9ac2ca1a6a9c4e0fea32acd6bb3", + "language": "C++", + "lines": 245, + "truncated": false, + "block": 9, + "row": 730 + }, + { + "path": "Modules/Image/src/Histogram1D.cc", + "sha256": "4518f392a2669c21c11e579c2fd6550e61f099f38658d3cb7280e78696ee1f85", + "language": "C++", + "lines": 434, + "truncated": false, + "block": 9, + "row": 812 + }, + { + "path": "Modules/Image/src/Histogram2D.cc", + "sha256": "4ed49df8e6dc0cb5087081534e25eddfa7727569f9ca27b1c95666b16c486915", + "language": "C++", + "lines": 1068, + "truncated": false, + "block": 9, + "row": 995 + }, + { + "path": "Modules/Image/src/HistogramMatching.cc", + "sha256": "c7e7931411403b1b4d14b46175f01f8391dcd33e05e608c256b06cb9c5b073b0", + "language": "C++", + "lines": 167, + "truncated": false, + "block": 9, + "row": 547 + }, + { + "path": "Modules/Image/src/ImageAttributes.cc", + "sha256": "1a20ec1dd1a27ec664eb87c3562738d79a8bbd86efe49ac5b8c9332897f4a481", + "language": "C++", + "lines": 850, + "truncated": false, + "block": 9, + "row": 958 + }, + { + "path": "Modules/Image/src/ImageConfig.cc", + "sha256": "9ce7827ca3f1e42b37e0f3be603d2972e57a1ac1aa13bd49f85f4e4cdd835ab4", + "language": "C++", + "lines": 333, + "truncated": false, + "block": 9, + "row": 771 + }, + { + "path": "Modules/Image/src/ImageFunction.cc", + "sha256": "bbe7d4c5564bfa3e65d3cdfbcb00c0f4087a7add0866caa2d3fd66e7bcae8918", + "language": "C++", + "lines": 66, + "truncated": false, + "block": 9, + "row": 271 + }, + { + "path": "Modules/Image/src/ImageGradientFunction.cc", + "sha256": "8d9525b52bd92841fd242d0510f9ed852957244b0aed576df7397360d65a010d", + "language": "C++", + "lines": 232, + "truncated": false, + "block": 9, + "row": 694 + }, + { + "path": "Modules/Image/src/ImageReader.cc", + "sha256": "0ef66d8d8044f386d63405ba32d1827b3798eab8ace07d638a2a6a0e29a42d72", + "language": "C++", + "lines": 209, + "truncated": false, + "block": 9, + "row": 613 + }, + { + "path": "Modules/Image/src/ImageReaderFactory.cc", + "sha256": "c117b4fa365699b6a4760dcd25582bd5846b95c62e5baf7f86e7c9d85a7469ef", + "language": "C++", + "lines": 69, + "truncated": false, + "block": 9, + "row": 279 + }, + { + "path": "Modules/Image/src/ImageToImage.cc", + "sha256": "a09957a22427e0ff5cd6c9e651ccf4247a5f42d86ea5204087aa524c9f0b0f60", + "language": "C++", + "lines": 190, + "truncated": false, + "block": 9, + "row": 568 + }, + { + "path": "Modules/Image/src/ImageWriter.cc", + "sha256": "a155dfef0dc4ca91fc191f2410d22ccf11351b03ddf2657ba9d5fba038e6fec1", + "language": "C++", + "lines": 128, + "truncated": false, + "block": 9, + "row": 468 + }, + { + "path": "Modules/Image/src/ImageWriterFactory.cc", + "sha256": "1c5abc63708189b4f4ed9b2c3c4da1b37aa8137fa0ce6b3e00b96e1440d9fa23", + "language": "C++", + "lines": 68, + "truncated": false, + "block": 9, + "row": 285 + }, + { + "path": "Modules/Image/src/InterpolateImageFunction.cc", + "sha256": "c08a1fc69b6acd4296caac69d6a2bd95cb16fac54cf9497d1aabbf1dfdeb427f", + "language": "C++", + "lines": 329, + "truncated": false, + "block": 9, + "row": 874 + }, + { + "path": "Modules/Image/src/NeighborhoodOffsets.cc", + "sha256": "2cdefd3da427f0f7667d9f880159420e28fa7945878a142b6ed10ec53ca364cf", + "language": "C++", + "lines": 123, + "truncated": false, + "block": 9, + "row": 419 + }, + { + "path": "Modules/Image/src/Resampling.cc", + "sha256": "c2373e6111dac05ba347af7537e3ade2a33ec4be0e534f8cd03a409e1f7f3ba4", + "language": "C++", + "lines": 244, + "truncated": false, + "block": 9, + "row": 644 + }, + { + "path": "Modules/Image/src/ResamplingWithPadding.cc", + "sha256": "9dca4733b89ee19c74398e4e44e107c0b7e556b01a59480efe623f1cafc087a2", + "language": "C++", + "lines": 159, + "truncated": false, + "block": 9, + "row": 529 + }, + { + "path": "Modules/Image/src/ScalarFunctionToImage.cc", + "sha256": "1b16abebc37a54ee3c7048d64dff78c62734dffed5f898e49663ac6dbb513e32", + "language": "C++", + "lines": 81, + "truncated": false, + "block": 9, + "row": 349 + }, + { + "path": "Modules/Image/src/ScalingAndSquaring.cc", + "sha256": "635f7618f8b7f2c0347ee4e37f58ad04f4618c241951ee64463ceba67cf96288", + "language": "C++", + "lines": 1249, + "truncated": false, + "block": 9, + "row": 1045 + }, + { + "path": "Modules/Image/src/SeparableConvolution.cc", + "sha256": "617bf22d0e2cbfd8bf233813c0698edf0875d5b69cf4eeeb4d3645429a20dc86", + "language": "C++", + "lines": 368, + "truncated": false, + "block": 9, + "row": 800 + }, + { + "path": "Modules/Image/src/ShapeBasedInterpolateImageFunction.cc", + "sha256": "9fe0860e50f84028669fbdc4cf894f0b7a4c9c608eca2b1712bed480105d431b", + "language": "C++", + "lines": 500, + "truncated": false, + "block": 9, + "row": 895 + }, + { + "path": "Modules/Image/src/VelocityToDisplacementField.cc", + "sha256": "11f5f66f27611e32573d3f59d4335562bdc5d8ccf5d9e9bc35212b7c6c9068f4", + "language": "C++", + "lines": 133, + "truncated": false, + "block": 9, + "row": 517 + }, + { + "path": "Modules/Image/src/VelocityToDisplacementFieldEuler.cc", + "sha256": "6a4f8d8b2a55092af45cbb4cdb983e99c1652cf8243df3ee58ae448f177783bb", + "language": "C++", + "lines": 100, + "truncated": false, + "block": 9, + "row": 438 + }, + { + "path": "Modules/Image/src/VelocityToDisplacementFieldSS.cc", + "sha256": "7533a4da0e10b194e5ad83e955dfd1d84d47428e8549555474826d18a7f35374", + "language": "C++", + "lines": 280, + "truncated": false, + "block": 9, + "row": 770 + }, + { + "path": "Modules/Image/src/Voxel.cc", + "sha256": "8631a65eff1d21d13a2571f40baff781f1a4837129c4a6fbc4c88234f8dfaaa8", + "language": "C++", + "lines": 131, + "truncated": false, + "block": 9, + "row": 591 + }, + { + "path": "Modules/Image/test/testConvolutionFunction.cc", + "sha256": "a11dcf46030a5a43045ada1ff1d75b10069ae3537cf791e65db118b6c1e1cd8d", + "language": "C++", + "lines": 93, + "truncated": false, + "block": 9, + "row": 424 + }, + { + "path": "Modules/Image/test/testDisplacementToVelocityField.cc", + "sha256": "2ef27d8492e96fc1f73957692f2082322c0901e0c297e8db45686c4a36e19183", + "language": "C++", + "lines": 620, + "truncated": false, + "block": 9, + "row": 918 + }, + { + "path": "Modules/Image/test/testDownsampling.cc", + "sha256": "12f4fd919c48be83a0cc9b438dce2ae425d71115e8757fd5211a680d16382763", + "language": "C++", + "lines": 165, + "truncated": false, + "block": 9, + "row": 606 + }, + { + "path": "Modules/Image/test/testInterpolateExtrapolateImageFunction.cc", + "sha256": "36f321eccaef5bb62d54358aadf7debb3da24077bd8302865423d997264e4480", + "language": "C++", + "lines": 515, + "truncated": false, + "block": 9, + "row": 973 + }, + { + "path": "Modules/Image/test/testUnaryVoxelFunction.cc", + "sha256": "973b3ed4f760bf2f7c60c853936ee9540bd30e2674d273962c800fdfcaf2bcb3", + "language": "C++", + "lines": 105, + "truncated": false, + "block": 9, + "row": 387 + }, + { + "path": "Modules/Numerics/include/mirtk/AdaptiveLineSearch.h", + "sha256": "9dd14b57c1f3b591c395f950ec3ba224726e70f1f6a8efd313915223b349983d", + "language": "C/C++", + "lines": 92, + "truncated": false, + "block": 9, + "row": 1371 + }, + { + "path": "Modules/Numerics/include/mirtk/Arith.h", + "sha256": "0f9647f3c5e2ad654342ff9e43c66b52cd514ff70ad32b2adf923e8cb289b3d6", + "language": "C/C++", + "lines": 51, + "truncated": false, + "block": 9, + "row": 1202 + }, + { + "path": "Modules/Numerics/include/mirtk/Arpack.h", + "sha256": "3c2ebf775c84c564b75d1a2fb839a30106d183dcce2ec9196fa92a6ebe1b5daf", + "language": "C/C++", + "lines": 128, + "truncated": false, + "block": 9, + "row": 1583 + }, + { + "path": "Modules/Numerics/include/mirtk/BSpline.h", + "sha256": "83fb1f5d7b3c6c8beb3393c41b39bd3d10fa21ee0d9f7d8b960289b81dfbec95", + "language": "C/C++", + "lines": 1181, + "truncated": false, + "block": 9, + "row": 1842 + }, + { + "path": "Modules/Numerics/include/mirtk/BrentLineSearch.h", + "sha256": "22313735cf5af6f55af601c7f9656811f14db077224761985c4fd48e0160f0bf", + "language": "C/C++", + "lines": 111, + "truncated": false, + "block": 9, + "row": 1453 + }, + { + "path": "Modules/Numerics/include/mirtk/CharbonnierErrorFunction.h", + "sha256": "77793f7692289c9848144e8731051fdc74c12794b4d1cb4a19802528337e9021", + "language": "C/C++", + "lines": 109, + "truncated": false, + "block": 9, + "row": 1389 + }, + { + "path": "Modules/Numerics/include/mirtk/ConjugateGradientDescent.h", + "sha256": "a823017d6b74e1af87b1b0b6b09a6a80d636e8648eee07288af37966263bbb0a", + "language": "C/C++", + "lines": 161, + "truncated": false, + "block": 9, + "row": 1554 + }, + { + "path": "Modules/Numerics/include/mirtk/DistanceErrorFunction.h", + "sha256": "b65b84cff2e8187337cbfca3d19764b6ab4fac83299bd41ad67ba04dc17b7fb7", + "language": "C/C++", + "lines": 77, + "truncated": false, + "block": 9, + "row": 1256 + }, + { + "path": "Modules/Numerics/include/mirtk/Eigen.h", + "sha256": "473014cb7f0a7e4af3153f5639ab79daadefdb0ff8edb81df1a71415128f4a31", + "language": "C/C++", + "lines": 93, + "truncated": false, + "block": 9, + "row": 1354 + }, + { + "path": "Modules/Numerics/include/mirtk/EnergyThreshold.h", + "sha256": "1c0a45c21b295e2b8ac46fd618f6c827a2babb377f1fd2b6061ab1140e9a3f83", + "language": "C/C++", + "lines": 94, + "truncated": false, + "block": 9, + "row": 1387 + }, + { + "path": "Modules/Numerics/include/mirtk/GaussianErrorFunction.h", + "sha256": "d0031f4200af20a47e7e84af4c64436c8bd8361fea9b72e6afeac658b89385b8", + "language": "C/C++", + "lines": 114, + "truncated": false, + "block": 9, + "row": 1386 + }, + { + "path": "Modules/Numerics/include/mirtk/GradientDescent.h", + "sha256": "4bcd5a4aeefa3d9f00a65294676455cd2e64d94c561d32391903a324054f2a8f", + "language": "C/C++", + "lines": 140, + "truncated": false, + "block": 9, + "row": 1498 + }, + { + "path": "Modules/Numerics/include/mirtk/InexactLineSearch.h", + "sha256": "a6ac5a7df100e4d875c252afe526e0fa9b39420032eafea0c4d268c2cb898499", + "language": "C/C++", + "lines": 136, + "truncated": false, + "block": 9, + "row": 1509 + }, + { + "path": "Modules/Numerics/include/mirtk/LimitedMemoryBFGSDescent.h", + "sha256": "91c8ca317b557b79ed6224c671e8497e2152be71db252112415811f037773093", + "language": "C/C++", + "lines": 101, + "truncated": false, + "block": 9, + "row": 1428 + }, + { + "path": "Modules/Numerics/include/mirtk/LineSearch.h", + "sha256": "259f2f7724136e8b64bf78aaeafcce71aa634b388fe778eff1baba255bb145b4", + "language": "C/C++", + "lines": 194, + "truncated": false, + "block": 9, + "row": 1616 + }, + { + "path": "Modules/Numerics/include/mirtk/LocalOptimizer.h", + "sha256": "ff092e0c92583709cd7e96d97eb0a23dfdc70e1fffccdc4bc38455cc037ffd67", + "language": "C/C++", + "lines": 226, + "truncated": false, + "block": 9, + "row": 1670 + }, + { + "path": "Modules/Numerics/include/mirtk/Matrix.h", + "sha256": "821257eb3ffd4cc67d7a1ae0259c006c293b3b20335d6cfc28a5121e5eabf07f", + "language": "C/C++", + "lines": 1532, + "truncated": false, + "block": 9, + "row": 1851 + }, + { + "path": "Modules/Numerics/include/mirtk/Matrix3x3.h", + "sha256": "8a6dfb263f2993dae1d5ed9fd274aa028b66d3fa8f9ca1a7c34e534e702209ba", + "language": "C/C++", + "lines": 230, + "truncated": false, + "block": 9, + "row": 1675 + }, + { + "path": "Modules/Numerics/include/mirtk/MaxStepLineSearch.h", + "sha256": "83eeae574146bf4decd9d9439a50b4cd9fff6329af20ffcb982b0d153107c1ee", + "language": "C/C++", + "lines": 65, + "truncated": false, + "block": 9, + "row": 1244 + }, + { + "path": "Modules/Numerics/include/mirtk/Numerics.h", + "sha256": "df78673e1e079e4bd32065ee5b0dd283cda8b441c54e70b03dbfc4872960bbb0", + "language": "C/C++", + "lines": 45, + "truncated": false, + "block": 9, + "row": 1189 + }, + { + "path": "Modules/Numerics/include/mirtk/ObjectiveFunction.h", + "sha256": "a99a41d0315993cc28d47add5c62e6dc515542cc8fa6b2d452abc58db7bed29a", + "language": "C/C++", + "lines": 245, + "truncated": false, + "block": 9, + "row": 1698 + }, + { + "path": "Modules/Numerics/include/mirtk/OptimizationMethod.h", + "sha256": "b03adeff682758ba417013d4590ef5fa82bcfe709ca9e849eedbadea1f552493", + "language": "C/C++", + "lines": 126, + "truncated": false, + "block": 9, + "row": 1524 + }, + { + "path": "Modules/Numerics/include/mirtk/PeronaMalikErrorFunction.h", + "sha256": "a71d7b99c839322b31ebc198c000a18ed27ccedba97eb144ad789c27b7da9921", + "language": "C/C++", + "lines": 111, + "truncated": false, + "block": 9, + "row": 1392 + }, + { + "path": "Modules/Numerics/include/mirtk/Plane.h", + "sha256": "ebe5f1d8ac90eafbf9bf6c3a7149e48424392748f4968aea55037f435288b56b", + "language": "C/C++", + "lines": 417, + "truncated": false, + "block": 9, + "row": 1729 + }, + { + "path": "Modules/Numerics/include/mirtk/Point.h", + "sha256": "a434d37f78eebafdad3b48d84b9c2ce10276793bbcd69c1376c77e27f215ffab", + "language": "C/C++", + "lines": 837, + "truncated": false, + "block": 9, + "row": 1791 + }, + { + "path": "Modules/Numerics/include/mirtk/PointSamples.h", + "sha256": "8e748a9eb44d932e60d2c24c2f767340e823d98fea6d2a744c286fb309cc3f9f", + "language": "C/C++", + "lines": 262, + "truncated": false, + "block": 9, + "row": 1686 + }, + { + "path": "Modules/Numerics/include/mirtk/PointSet.h", + "sha256": "33d57a148aecff9aebcd478d9ac16f55816ad33e3c9f1f5116eea522202e9b39", + "language": "C/C++", + "lines": 485, + "truncated": false, + "block": 9, + "row": 1735 + }, + { + "path": "Modules/Numerics/include/mirtk/Polynomial.h", + "sha256": "796b98a4ed1efd2599fc41985fd0636fc8ffb9996c33b0969fb4a134693ca153", + "language": "C/C++", + "lines": 790, + "truncated": false, + "block": 9, + "row": 1817 + }, + { + "path": "Modules/Numerics/include/mirtk/PolynomialSolvers.h", + "sha256": "e3798b4c0b8f8ab4abfea691aaa6a481095149005fbe94a6a54508b8cd84e9d3", + "language": "C/C++", + "lines": 190, + "truncated": false, + "block": 9, + "row": 1628 + }, + { + "path": "Modules/Numerics/include/mirtk/RadialErrorFunction.h", + "sha256": "29621eda6596ca092a8f1a6ea22466b60faa75ef26ef4671fae454e494e9c611", + "language": "C/C++", + "lines": 88, + "truncated": false, + "block": 9, + "row": 1342 + }, + { + "path": "Modules/Numerics/include/mirtk/ScalarFunction.h", + "sha256": "43b50343927ea59a298fac004661b1e287dcc00adcd3f8ba37655c3aa0c023b8", + "language": "C/C++", + "lines": 49, + "truncated": false, + "block": 9, + "row": 1183 + }, + { + "path": "Modules/Numerics/include/mirtk/ScalarGaussian.h", + "sha256": "a98554fbb6ee488e8381ebca0f9660248625f24ddaebbf1233d9d1b2070221cc", + "language": "C/C++", + "lines": 90, + "truncated": false, + "block": 9, + "row": 1327 + }, + { + "path": "Modules/Numerics/include/mirtk/Sinc.h", + "sha256": "9604b823a78b1d150d04aad5e56086fb0516fda0241ee7f52fae0fd13bb0efe1", + "language": "C/C++", + "lines": 85, + "truncated": false, + "block": 9, + "row": 1331 + }, + { + "path": "Modules/Numerics/include/mirtk/SparseMatrix.h", + "sha256": "b5642880e52258ecb4c2d308c760cfae771978e672edefcbef12b3b5405ac586", + "language": "C/C++", + "lines": 1998, + "truncated": false, + "block": 9, + "row": 1859 + }, + { + "path": "Modules/Numerics/include/mirtk/SquaredErrorFunction.h", + "sha256": "b5f6b1827d0428455472c0b45dad96ea9d2f7b4bd428eaa94222c445b22f6e01", + "language": "C/C++", + "lines": 76, + "truncated": false, + "block": 9, + "row": 1246 + }, + { + "path": "Modules/Numerics/include/mirtk/StoppingCriterion.h", + "sha256": "503a114a9059a26063e55a6df9f30057a2515ff4f995b008361ce911abdcd97b", + "language": "C/C++", + "lines": 121, + "truncated": false, + "block": 9, + "row": 1478 + }, + { + "path": "Modules/Numerics/include/mirtk/Umfpack.h", + "sha256": "1dcfdfa93b72829a27b72513ac0dd98f9c3fa0969126724b24343dd7f7e0316f", + "language": "C/C++", + "lines": 94, + "truncated": false, + "block": 9, + "row": 1431 + }, + { + "path": "Modules/Numerics/include/mirtk/Vector.h", + "sha256": "fbf1b941f38c9fa4dd25ea5b5a0c152a9467727e1d8a90fc845d3e28195d9c16", + "language": "C/C++", + "lines": 819, + "truncated": false, + "block": 9, + "row": 1797 + }, + { + "path": "Modules/Numerics/include/mirtk/Vector3.h", + "sha256": "6f27fed40312209d4ea47939bb26d4a1c92d8a6ac0aa5ed32a56760ec0e0e418", + "language": "C/C++", + "lines": 100, + "truncated": false, + "block": 9, + "row": 1414 + }, + { + "path": "Modules/Numerics/include/mirtk/Vector3D.h", + "sha256": "a991ef9d3764eada6f628eadb399eeabc2355c166b99647a27b836c3197a00ed", + "language": "C/C++", + "lines": 1008, + "truncated": false, + "block": 9, + "row": 1819 + }, + { + "path": "Modules/Numerics/include/mirtk/Vector4D.h", + "sha256": "e9d2fc2abb9f4b7e4f6d1e26d5739bac423c784c7514617416cbcb1926bb7eef", + "language": "C/C++", + "lines": 498, + "truncated": false, + "block": 9, + "row": 1751 + }, + { + "path": "Modules/Numerics/include/mirtk/VectorND.h", + "sha256": "e7913104c95ee21c2853aec9186fa9fe7353d03b70bf9c7548942ce4180a5b1d", + "language": "C/C++", + "lines": 919, + "truncated": false, + "block": 9, + "row": 1813 + }, + { + "path": "Modules/Numerics/src/AdaptiveLineSearch.cc", + "sha256": "4ae5f71cd0397225812d5d00cd5739008525f793a584a2248851b9c1a348e371", + "language": "C++", + "lines": 260, + "truncated": false, + "block": 9, + "row": 692 + }, + { + "path": "Modules/Numerics/src/Arith.cc", + "sha256": "2bdca6067ee8d3be688d38ce9bbaa9df3a0813cdb6ce0a409edadea08b0981fb", + "language": "C++", + "lines": 176, + "truncated": false, + "block": 9, + "row": 478 + }, + { + "path": "Modules/Numerics/src/BSpline.cc", + "sha256": "845edb2ef6a253557aee98bdf99a16a9804d9d148429516c8189d79918ce71f9", + "language": "C++", + "lines": 46, + "truncated": false, + "block": 9, + "row": 253 + }, + { + "path": "Modules/Numerics/src/BrentLineSearch.cc", + "sha256": "608b8cceb0dbe54d9a1cb229d091dead709f1d11963765b618ab4198aad89bb1", + "language": "C++", + "lines": 386, + "truncated": false, + "block": 9, + "row": 790 + }, + { + "path": "Modules/Numerics/src/ConjugateGradientDescent.cc", + "sha256": "4eda59da2244cce8d8845d1d132b7c7eab82f0435862f04fdeab3aa4eda87c54", + "language": "C++", + "lines": 182, + "truncated": false, + "block": 9, + "row": 588 + }, + { + "path": "Modules/Numerics/src/EnergyThreshold.cc", + "sha256": "a89386da88244b6f44ac3552c9fd3fa6f2e97daba9fc98ce823c6de433be9aad", + "language": "C++", + "lines": 101, + "truncated": false, + "block": 9, + "row": 392 + }, + { + "path": "Modules/Numerics/src/GradientDescent.cc", + "sha256": "5243ab7cc1710c81238bd27cb8bbf963668d9b285dc86cdb916adfaa2436e0f2", + "language": "C++", + "lines": 385, + "truncated": false, + "block": 9, + "row": 852 + }, + { + "path": "Modules/Numerics/src/InexactLineSearch.cc", + "sha256": "8931ecc62e09a02035224523faed0c3d74117126cf97fd8bedea84fce697c184", + "language": "C++", + "lines": 216, + "truncated": false, + "block": 9, + "row": 643 + }, + { + "path": "Modules/Numerics/src/LimitedMemoryBFGSDescent.cc", + "sha256": "f40ac2ec868f2685bf80d00aa0e6d675565912a158a0af57fa30301b332db664", + "language": "C++", + "lines": 242, + "truncated": false, + "block": 9, + "row": 786 + }, + { + "path": "Modules/Numerics/src/LineSearch.cc", + "sha256": "cbcd3d3ccfd0feb621116ab55d6cce937971b848d688ca0b884569a0368350ca", + "language": "C++", + "lines": 195, + "truncated": false, + "block": 9, + "row": 632 + }, + { + "path": "Modules/Numerics/src/LocalOptimizer.cc", + "sha256": "101e9fd165991cc667ed88b0da458b66db398f242181606443de06b4937bd2b1", + "language": "C++", + "lines": 311, + "truncated": false, + "block": 9, + "row": 769 + }, + { + "path": "Modules/Numerics/src/Matrix.cc", + "sha256": "cc19188edfd7e0873d675c883c630e54474a530c8b53610266566f2cb330d477", + "language": "C++", + "lines": 1671, + "truncated": false, + "block": 9, + "row": 1043 + }, + { + "path": "Modules/Numerics/src/Matrix3x3.cc", + "sha256": "389c77b186b10f65f6541ff8fab8ddf2ec38ea54acbbd9b50075ab35b6165078", + "language": "C++", + "lines": 1673, + "truncated": false, + "block": 9, + "row": 1058 + }, + { + "path": "Modules/Numerics/src/MaxStepLineSearch.cc", + "sha256": "08e554c87c5bd54e44968222789e77abd2e0a54d1b9c89d066f98f42c3359d0b", + "language": "C++", + "lines": 145, + "truncated": false, + "block": 9, + "row": 474 + }, + { + "path": "Modules/Numerics/src/NumericsConfig.cc", + "sha256": "63811ccd262d97b584047bda12aa23d00048e26b2b9c66ff946db5147e511c72", + "language": "C++", + "lines": 58, + "truncated": false, + "block": 9, + "row": 252 + }, + { + "path": "Modules/Numerics/src/Plane.cc", + "sha256": "ad46fa66f37032fdbe14709039fe0f561daa45efde2fa60fc2bedde1116d3256", + "language": "C++", + "lines": 134, + "truncated": false, + "block": 9, + "row": 433 + }, + { + "path": "Modules/Numerics/src/Point.cc", + "sha256": "003861355e3c1cec97f2fa0734d3b1a32444d8646197c13d142d75f3886c600b", + "language": "C++", + "lines": 52, + "truncated": false, + "block": 9, + "row": 221 + }, + { + "path": "Modules/Numerics/src/PointSamples.cc", + "sha256": "df5d5bd2a629008b8fca2f45bb893c4bbd9d6895c00fbba2af12dd55b2aa8295", + "language": "C++", + "lines": 391, + "truncated": false, + "block": 9, + "row": 822 + }, + { + "path": "Modules/Numerics/src/PointSet.cc", + "sha256": "5ce90dba4434ff716ed685a32b416e10212af01120a98e8044be3ebdfa8fe77f", + "language": "C++", + "lines": 554, + "truncated": false, + "block": 9, + "row": 858 + }, + { + "path": "Modules/Numerics/src/Polynomial.cc", + "sha256": "d6f468f2ab6e5b62483a4717c55f6a8d0f5bec204b949e7e311dbba9f1a74a26", + "language": "C++", + "lines": 614, + "truncated": false, + "block": 9, + "row": 923 + }, + { + "path": "Modules/Numerics/src/PolynomialSolvers.cc", + "sha256": "8107c3b3c07b8c93fbc6f6c3ff60762666d37562abfd29aebb09ed2ea748ef06", + "language": "C++", + "lines": 92, + "truncated": false, + "block": 9, + "row": 341 + }, + { + "path": "Modules/Numerics/src/RadialErrorFunction.cc", + "sha256": "c68ab6079e3806bab00f1208d9c2b8573dd28af30d28eb731cdc1ff78829b5f9", + "language": "C++", + "lines": 110, + "truncated": false, + "block": 9, + "row": 457 + }, + { + "path": "Modules/Numerics/src/ScalarGaussian.cc", + "sha256": "9516ac596f906ef948ef2c3da5023468fe184d71b014d25ec165cd9fb9fce072", + "language": "C++", + "lines": 136, + "truncated": false, + "block": 9, + "row": 516 + }, + { + "path": "Modules/Numerics/src/Sinc.cc", + "sha256": "cc1c1f2b9a8ef6f3dc06de3686cb20d77df22653fe2f03ad4478fe63331d0eb8", + "language": "C++", + "lines": 57, + "truncated": false, + "block": 9, + "row": 261 + }, + { + "path": "Modules/Numerics/src/SparseMatrix.cc", + "sha256": "c1da81dc7d00278056f1108c551bc1007b547b9bfced0060c6877d490805074d", + "language": "C++", + "lines": 359, + "truncated": false, + "block": 9, + "row": 809 + }, + { + "path": "Modules/Numerics/src/StoppingCriterion.cc", + "sha256": "2f8dc0cc2bf831711fa60f86c73541b5dc267dc2d829127b9485cb58861a2b12", + "language": "C++", + "lines": 103, + "truncated": false, + "block": 9, + "row": 388 + }, + { + "path": "Modules/Numerics/src/Vector.cc", + "sha256": "108b0830afb13cca140d4ea03090c5e68bba7f6d7f14998e9577e9a2c91f05f9", + "language": "C++", + "lines": 226, + "truncated": false, + "block": 9, + "row": 599 + }, + { + "path": "Modules/Numerics/src/Vector3.cc", + "sha256": "26360dfea72561da67651516aeedb35c941f833c3e7b4f191fcbc22be06ed824", + "language": "C++", + "lines": 372, + "truncated": false, + "block": 9, + "row": 752 + }, + { + "path": "Modules/Numerics/src/Vector3D.cc", + "sha256": "73f74455852afb80c89beb5f17f6418d09c3fa0b57a190d21260213a0581d9f3", + "language": "C++", + "lines": 31, + "truncated": false, + "block": 9, + "row": 185 + }, + { + "path": "Modules/Numerics/src/Vector4D.cc", + "sha256": "12a0a58548244eb4bd77970d2b07c41ef3667c322a3cc6d24c667c95a485e98e", + "language": "C++", + "lines": 55, + "truncated": false, + "block": 9, + "row": 257 + }, + { + "path": "Modules/Numerics/test/NumericsTest.h", + "sha256": "9d9d6d1347a413a3adaf3fb09df9d8ec6fb83c37aadbb1f80979ade66def8914", + "language": "C/C++", + "lines": 81, + "truncated": false, + "block": 9, + "row": 1367 + }, + { + "path": "Modules/Numerics/test/testMatrix.cc", + "sha256": "7efad2cdaddb3e9e4987507290894c3997edf542e8b0416555215898001228ee", + "language": "C++", + "lines": 378, + "truncated": false, + "block": 9, + "row": 815 + }, + { + "path": "Modules/Numerics/test/testPolynomial.cc", + "sha256": "d9adb8dcace2ba0e832a9ac00ff8354dfb7a4d3b1077956b41bac4cfd839372c", + "language": "C++", + "lines": 171, + "truncated": false, + "block": 9, + "row": 592 + }, + { + "path": "Modules/Numerics/test/testVector.cc", + "sha256": "febbe90d2c55528ea875a08d2d2727c9438f65e24c711013206e5ddcdf22a20a", + "language": "C++", + "lines": 121, + "truncated": false, + "block": 9, + "row": 458 + }, + { + "path": "Modules/PointSet/include/mirtk/BoundarySegment.h", + "sha256": "50f1d61fd912dd28fadf71e937b6eaab887912c09c1fe27c28ad707ae0cfc56d", + "language": "C/C++", + "lines": 416, + "truncated": false, + "block": 9, + "row": 1745 + }, + { + "path": "Modules/PointSet/include/mirtk/CellDataFilter.h", + "sha256": "81d77db0a818abcc08f58018da12dd1db14a65251cbe52150340aedd03f52a04", + "language": "C/C++", + "lines": 101, + "truncated": false, + "block": 9, + "row": 1384 + }, + { + "path": "Modules/PointSet/include/mirtk/CloseCellData.h", + "sha256": "a4743d3208d85e5c26e796429b1912e3eab45249626191bf0a46f1ebe2caa33f", + "language": "C/C++", + "lines": 78, + "truncated": false, + "block": 9, + "row": 1274 + }, + { + "path": "Modules/PointSet/include/mirtk/ClosePointData.h", + "sha256": "9cb29e9fc7bd80bfa43fa165de368348db372c8259654a096fb5246af4a5b836", + "language": "C/C++", + "lines": 78, + "truncated": false, + "block": 9, + "row": 1277 + }, + { + "path": "Modules/PointSet/include/mirtk/ClosestCell.h", + "sha256": "d4d6a2e0286140ba89a0953d858d25f2f9212445d3abee5c381be004abf64302", + "language": "C/C++", + "lines": 136, + "truncated": false, + "block": 9, + "row": 1484 + }, + { + "path": "Modules/PointSet/include/mirtk/ClosestPoint.h", + "sha256": "68c9bf74fea8b39a3325fc94a9b4d7b6e1336fc15dd110c32007812519da753b", + "language": "C/C++", + "lines": 137, + "truncated": false, + "block": 9, + "row": 1508 + }, + { + "path": "Modules/PointSet/include/mirtk/ClosestPointLabel.h", + "sha256": "593df06e7ca4d3efe33fa79e5b188ee316784a2bec4760623f91783d5687aa48", + "language": "C/C++", + "lines": 109, + "truncated": false, + "block": 9, + "row": 1433 + }, + { + "path": "Modules/PointSet/include/mirtk/DilateCellData.h", + "sha256": "96aa236cdd9854d4fbd8073134c810f75caef648b90ed7815496b4164d9326a8", + "language": "C/C++", + "lines": 75, + "truncated": false, + "block": 9, + "row": 1261 + }, + { + "path": "Modules/PointSet/include/mirtk/DilatePointData.h", + "sha256": "180be2a1f13d40bcc596432b68aaf6fce7fbdccc6fc841503b553fbe920d8aaf", + "language": "C/C++", + "lines": 75, + "truncated": false, + "block": 9, + "row": 1267 + }, + { + "path": "Modules/PointSet/include/mirtk/EdgeConnectivity.h", + "sha256": "9ca0dfe978cb2b57b5d86ab00fc642827bfbdc40c570a30a201f9f47ed99eb1c", + "language": "C/C++", + "lines": 209, + "truncated": false, + "block": 9, + "row": 1625 + }, + { + "path": "Modules/PointSet/include/mirtk/EdgeTable.h", + "sha256": "220dbd1c4086c3dfbc9bb80a8c0df8d24f05dfbe1ff57611a832f8263c540b57", + "language": "C/C++", + "lines": 291, + "truncated": false, + "block": 9, + "row": 1683 + }, + { + "path": "Modules/PointSet/include/mirtk/ErodeCellData.h", + "sha256": "d5eb6d2896093f021dc94f9b848686034fe6aeab3e9c3b0d1b88a09c41420d76", + "language": "C/C++", + "lines": 75, + "truncated": false, + "block": 9, + "row": 1259 + }, + { + "path": "Modules/PointSet/include/mirtk/ErodePointData.h", + "sha256": "92b568b480b8962f9c4d19dc153dc558f18958378663c5d54c0db9fc04dda415", + "language": "C/C++", + "lines": 75, + "truncated": false, + "block": 9, + "row": 1263 + }, + { + "path": "Modules/PointSet/include/mirtk/FiducialMatch.h", + "sha256": "c49547977c3ac953a7b3d293da37107227a3ba12537c92252a1f207e9da1071f", + "language": "C/C++", + "lines": 127, + "truncated": false, + "block": 9, + "row": 1485 + }, + { + "path": "Modules/PointSet/include/mirtk/FuzzyCorrespondence.h", + "sha256": "fbdc6dd17693c432643754620aebda088306d4feb36c812abe1c0c25ece2fa58", + "language": "C/C++", + "lines": 180, + "truncated": false, + "block": 9, + "row": 1593 + }, + { + "path": "Modules/PointSet/include/mirtk/ImageSurfaceStatistics.h", + "sha256": "3bf6fc41e6ab46314dbe2ea3c3febf58ed14de508739ff2bd5f7ffe2fc23c2db", + "language": "C/C++", + "lines": 127, + "truncated": false, + "block": 9, + "row": 1467 + }, + { + "path": "Modules/PointSet/include/mirtk/ImplicitSurfaceUtils.h", + "sha256": "b89795a964b5b20ae9998668aec0eaea8ea5c50c579ad6927266337c4fff493d", + "language": "C/C++", + "lines": 956, + "truncated": false, + "block": 9, + "row": 1840 + }, + { + "path": "Modules/PointSet/include/mirtk/MedianPointData.h", + "sha256": "143b99666c6ba5f3909eff65b46b277165d83c36c956e5b5fa2ae2ddd7f6b379", + "language": "C/C++", + "lines": 72, + "truncated": false, + "block": 9, + "row": 1249 + }, + { + "path": "Modules/PointSet/include/mirtk/MeshFilter.h", + "sha256": "691122314adbcef97de0f65308551f076fc09088565e6bec838c9b9959953c5a", + "language": "C/C++", + "lines": 214, + "truncated": false, + "block": 9, + "row": 1630 + }, + { + "path": "Modules/PointSet/include/mirtk/MeshSmoothing.h", + "sha256": "9118286e03c11bd066735dc699a39a0f331c90a12b8995b0a9caf80c1ac319e3", + "language": "C/C++", + "lines": 278, + "truncated": false, + "block": 9, + "row": 1705 + }, + { + "path": "Modules/PointSet/include/mirtk/OpenCellData.h", + "sha256": "0a2e995a39afdcf73ac7f5000d2a24cba952e1cf5d3f6cca12cf8e7cb240a3fe", + "language": "C/C++", + "lines": 78, + "truncated": false, + "block": 9, + "row": 1269 + }, + { + "path": "Modules/PointSet/include/mirtk/OpenPointData.h", + "sha256": "49213a415adaa7fbc74b5f26874193a1b28c5c8110a111300d79875572ebb1af", + "language": "C/C++", + "lines": 78, + "truncated": false, + "block": 9, + "row": 1275 + }, + { + "path": "Modules/PointSet/include/mirtk/PointCorrespondence.h", + "sha256": "a39025b64fc2c9b83aea865042e69c7fb8a883b2acbe889ba9cfccdfa9b54620", + "language": "C/C++", + "lines": 615, + "truncated": false, + "block": 9, + "row": 1806 + }, + { + "path": "Modules/PointSet/include/mirtk/PointDataFilter.h", + "sha256": "0db9c38efb0e41e11bf939604b3a4bb7b1991fe259ba0039188d838dfebc61cc", + "language": "C/C++", + "lines": 111, + "truncated": false, + "block": 9, + "row": 1447 + }, + { + "path": "Modules/PointSet/include/mirtk/PointLocator.h", + "sha256": "b11d4dd6c41ccdea546a67f0cb2bd3762c94626736eb90edc591090843c64694", + "language": "C/C++", + "lines": 970, + "truncated": false, + "block": 9, + "row": 1847 + }, + { + "path": "Modules/PointSet/include/mirtk/PointSetUtils.h", + "sha256": "fbc4128bda73ab04fda6fcaeb370674310c54b1097e65ed74b8eb3095000fc54", + "language": "C/C++", + "lines": 477, + "truncated": false, + "block": 9, + "row": 1779 + }, + { + "path": "Modules/PointSet/include/mirtk/Polyhedron.h", + "sha256": "1c2fcfe7b80bf70ecf974873a8d35b683fdc59b422a9fec69bc73acb5c64c831", + "language": "C/C++", + "lines": 252, + "truncated": false, + "block": 9, + "row": 1666 + }, + { + "path": "Modules/PointSet/include/mirtk/RegisteredPointSet.h", + "sha256": "f5a8af4a8a5596793b6241be5467ead33273ee31f0c504c1c629c41d24b94e92", + "language": "C/C++", + "lines": 679, + "truncated": false, + "block": 9, + "row": 1805 + }, + { + "path": "Modules/PointSet/include/mirtk/RegisteredSurface.h", + "sha256": "e26c9f36ad35423abc15cecc38469e07c8d1c4a33f8238bc0d7e954af0d4f426", + "language": "C/C++", + "lines": 177, + "truncated": false, + "block": 9, + "row": 1581 + }, + { + "path": "Modules/PointSet/include/mirtk/RobustClosestPoint.h", + "sha256": "16e4926486c2980f17436fcf1d356121235a5d47598afe2a129bf6257f3df3c0", + "language": "C/C++", + "lines": 103, + "truncated": false, + "block": 9, + "row": 1411 + }, + { + "path": "Modules/PointSet/include/mirtk/RobustPointMatch.h", + "sha256": "500b96dd8fdeeddf44764548711086d0af759506cba8df41d0487f4cb6a637fe", + "language": "C/C++", + "lines": 132, + "truncated": false, + "block": 9, + "row": 1492 + }, + { + "path": "Modules/PointSet/include/mirtk/SpectralDecomposition.h", + "sha256": "213fc097e627263eeb8da5473017ec33b69b49d3ce83d78ed3f5fb008bccec5f", + "language": "C/C++", + "lines": 470, + "truncated": false, + "block": 9, + "row": 1794 + }, + { + "path": "Modules/PointSet/include/mirtk/SpectralMatch.h", + "sha256": "00baa4735b0cc69f5c033eb388be0c448b0d19f40afd226ddcab0472aff6a3c5", + "language": "C/C++", + "lines": 120, + "truncated": false, + "block": 9, + "row": 1442 + }, + { + "path": "Modules/PointSet/include/mirtk/Stripper.h", + "sha256": "20ba78e9dead89d8eae38d4a2cecd3a060265eb9746f4c9360c6e58d62fd9855", + "language": "C/C++", + "lines": 93, + "truncated": false, + "block": 9, + "row": 1329 + }, + { + "path": "Modules/PointSet/include/mirtk/SurfaceBoundary.h", + "sha256": "4483a43c7ad2ee458a48b345561bdfc9d2f282df0112e3ea2f67b6b6de77203b", + "language": "C/C++", + "lines": 362, + "truncated": false, + "block": 9, + "row": 1711 + }, + { + "path": "Modules/PointSet/include/mirtk/SurfaceCollisions.h", + "sha256": "581955cd20c786c06491a93d57e0474cd1112e403bb96c99045a3e8ef1cefce8", + "language": "C/C++", + "lines": 404, + "truncated": false, + "block": 9, + "row": 1756 + }, + { + "path": "Modules/PointSet/include/mirtk/SurfaceCurvature.h", + "sha256": "a931e77a8b55244e326ed86ec47f90242834224d730f993169fd4e6e65d5d39c", + "language": "C/C++", + "lines": 289, + "truncated": false, + "block": 9, + "row": 1715 + }, + { + "path": "Modules/PointSet/include/mirtk/SurfaceFilter.h", + "sha256": "68e83b92ca75a72de1c85312534a0b7ff2cac8d8814d8f16bb1de0521ae9d69b", + "language": "C/C++", + "lines": 72, + "truncated": false, + "block": 9, + "row": 1253 + }, + { + "path": "Modules/PointSet/include/mirtk/SurfacePatches.h", + "sha256": "35392b12e638126f9a342c68831f3e7e8d6701dc38182ee2278d527745e38683", + "language": "C/C++", + "lines": 113, + "truncated": false, + "block": 9, + "row": 1419 + }, + { + "path": "Modules/PointSet/include/mirtk/SurfaceRemeshing.h", + "sha256": "b4980a5e8fd92a9e3aaa59ed12e6c7a0a3a3f874c27845bd7b312428205ae4d0", + "language": "C/C++", + "lines": 396, + "truncated": false, + "block": 9, + "row": 1753 + }, + { + "path": "Modules/PointSet/include/mirtk/Triangle.h", + "sha256": "2c6e740a2817b13121625498455776d8027e34307f2dd55201b95d9c781937f2", + "language": "C/C++", + "lines": 563, + "truncated": false, + "block": 9, + "row": 1799 + }, + { + "path": "Modules/PointSet/src/BoundarySegment.cc", + "sha256": "c953b8e65e281f83ecd6921dd3920d8412eb5966fa4bc8fc7a82bb9bcf67b7d5", + "language": "C++", + "lines": 209, + "truncated": false, + "block": 9, + "row": 594 + }, + { + "path": "Modules/PointSet/src/CellDataFilter.cc", + "sha256": "a6b09330c0d10915330d45a1b416b63278f591954b5640d9048bd020189138b6", + "language": "C++", + "lines": 163, + "truncated": false, + "block": 9, + "row": 566 + }, + { + "path": "Modules/PointSet/src/CloseCellData.cc", + "sha256": "e20de1d3722a1492d20ee60b7704e91522a15fa6d35a7f6853a9975e1df220cd", + "language": "C++", + "lines": 100, + "truncated": false, + "block": 9, + "row": 359 + }, + { + "path": "Modules/PointSet/src/ClosePointData.cc", + "sha256": "5c7ba908cf35e9739db5cd5a47a13e1ef6c6997ab63902d0a6023837f8cbcf21", + "language": "C++", + "lines": 109, + "truncated": false, + "block": 9, + "row": 384 + }, + { + "path": "Modules/PointSet/src/ClosestCell.cc", + "sha256": "93162111fece5d2faf34c6b9c25dfcfef402714e7fe15e1cb7cdf69ff86712c0", + "language": "C++", + "lines": 395, + "truncated": false, + "block": 9, + "row": 823 + }, + { + "path": "Modules/PointSet/src/ClosestPoint.cc", + "sha256": "c7120e1986d47f6794b2e900aca11c4936df21f262af18fd097e8963e54ba789", + "language": "C++", + "lines": 222, + "truncated": false, + "block": 9, + "row": 634 + }, + { + "path": "Modules/PointSet/src/ClosestPointLabel.cc", + "sha256": "fc965fc4b0fd03454940a00081f604dd680eca54b7bb792607da79b3d0953251", + "language": "C++", + "lines": 398, + "truncated": false, + "block": 9, + "row": 856 + }, + { + "path": "Modules/PointSet/src/DilateCellData.cc", + "sha256": "11fac61a3d0ad4af1ca717a6b2c5e49c60a4706072ab4e3d9752ee354613bb6d", + "language": "C++", + "lines": 135, + "truncated": false, + "block": 9, + "row": 456 + }, + { + "path": "Modules/PointSet/src/DilatePointData.cc", + "sha256": "0ad25d2328f39da929bca3f80a7c54f356bb11411b95732660bc948d0672a328", + "language": "C++", + "lines": 142, + "truncated": false, + "block": 9, + "row": 493 + }, + { + "path": "Modules/PointSet/src/EdgeConnectivity.cc", + "sha256": "e26591f4ccf2e86c2a1ac212fd1e481c98919bbbeb1a625318f45235dd7eff96", + "language": "C++", + "lines": 269, + "truncated": false, + "block": 9, + "row": 671 + }, + { + "path": "Modules/PointSet/src/EdgeTable.cc", + "sha256": "842f720f15bad7670260336dfda1a532afe3bfc5bd34d5d8431a1f0fc89cfe87", + "language": "C++", + "lines": 178, + "truncated": false, + "block": 9, + "row": 560 + }, + { + "path": "Modules/PointSet/src/ErodeCellData.cc", + "sha256": "aa2db7491f4525bf5c9d91a589d64a143bb248ba0b060314ffaa8a42c04fcf2c", + "language": "C++", + "lines": 135, + "truncated": false, + "block": 9, + "row": 455 + }, + { + "path": "Modules/PointSet/src/ErodePointData.cc", + "sha256": "5fa963fe675d0c3d7f7e254941e2ee4c81562ff1459ce9c006726d71917b165f", + "language": "C++", + "lines": 142, + "truncated": false, + "block": 9, + "row": 492 + }, + { + "path": "Modules/PointSet/src/FiducialMatch.cc", + "sha256": "e71b9540d20a915c0a5f83da4addb90595dff08cf1194737041c47efa410c46b", + "language": "C++", + "lines": 245, + "truncated": false, + "block": 9, + "row": 697 + }, + { + "path": "Modules/PointSet/src/FuzzyCorrespondence.cc", + "sha256": "7b7cf7fc2ec227bb87a740f3a57937023a5367b1f2e3ed129e1f97d859902f96", + "language": "C++", + "lines": 415, + "truncated": false, + "block": 9, + "row": 830 + }, + { + "path": "Modules/PointSet/src/FuzzyCorrespondenceUtils.cc", + "sha256": "2e9adbb4838011276912d420600ecba423e40a4daf578360568abd0c871ad064", + "language": "C++", + "lines": 194, + "truncated": false, + "block": 9, + "row": 545 + }, + { + "path": "Modules/PointSet/src/FuzzyCorrespondenceUtils.h", + "sha256": "ca214371d34e1c107baee80c4169608cf47861300f8673fc4cbc12b4b658c201", + "language": "C/C++", + "lines": 42, + "truncated": false, + "block": 9, + "row": 1237 + }, + { + "path": "Modules/PointSet/src/ImageSurfaceStatistics.cc", + "sha256": "d019016facaaa5815b7454e62c87ad363e55507419e748661c2e7bafbe2a81d6", + "language": "C++", + "lines": 324, + "truncated": false, + "block": 9, + "row": 773 + }, + { + "path": "Modules/PointSet/src/ImplicitSurfaceUtils.cc", + "sha256": "26e7f57722a3f698f1e3aa5d23532d2517885f19afe28f5769828a5371d964a3", + "language": "C++", + "lines": 139, + "truncated": false, + "block": 9, + "row": 509 + }, + { + "path": "Modules/PointSet/src/MedianPointData.cc", + "sha256": "4643caae1c295a31ab4c9b0e2f158f13fff54b96caf297f7385027eb8bf6addb", + "language": "C++", + "lines": 127, + "truncated": false, + "block": 9, + "row": 448 + }, + { + "path": "Modules/PointSet/src/MeshFilter.cc", + "sha256": "2694ba742af24d878bf0c8fab1c1ba619abbe65e39733ecbecc0cc8e8dec1523", + "language": "C++", + "lines": 182, + "truncated": false, + "block": 9, + "row": 562 + }, + { + "path": "Modules/PointSet/src/MeshSmoothing.cc", + "sha256": "1b8f405149c88ce187e3a00e75e2344ab6902eb56e7ed133321d18f0401d1d23", + "language": "C++", + "lines": 1244, + "truncated": false, + "block": 9, + "row": 1047 + }, + { + "path": "Modules/PointSet/src/OpenCellData.cc", + "sha256": "e1b62ecb3217c1054bc80d52ec7d995ee2f3d77f64e435af159311b077e7783a", + "language": "C++", + "lines": 100, + "truncated": false, + "block": 9, + "row": 358 + }, + { + "path": "Modules/PointSet/src/OpenPointData.cc", + "sha256": "47ca4ef60806447afd85311badff70c3843cb5ff68a168e87990171c82876b0c", + "language": "C++", + "lines": 109, + "truncated": false, + "block": 9, + "row": 383 + }, + { + "path": "Modules/PointSet/src/PointCorrespondence.cc", + "sha256": "d4b5738fa5e96ba5f3733daa536ac8fcb5bbc09c66bfaf4626091efa0de79f0e", + "language": "C++", + "lines": 949, + "truncated": false, + "block": 9, + "row": 1023 + }, + { + "path": "Modules/PointSet/src/PointDataFilter.cc", + "sha256": "770cc646b64a999842c6eb2bf75b70b8af5cb4c0a003f3ee032ed9ad330211d5", + "language": "C++", + "lines": 134, + "truncated": false, + "block": 9, + "row": 496 + }, + { + "path": "Modules/PointSet/src/PointLocator.cc", + "sha256": "c1540685b63d23f801b9bc494cb607d51656e493eee7e56fb5b15c19eea9b1a6", + "language": "C++", + "lines": 854, + "truncated": false, + "block": 9, + "row": 981 + }, + { + "path": "Modules/PointSet/src/PointSetUtils.cc", + "sha256": "d29361bb2cbd74571e29f43d7072a877258a38eb477cf0ee8ff726d4dcab1857", + "language": "C++", + "lines": 1230, + "truncated": false, + "block": 9, + "row": 1032 + }, + { + "path": "Modules/PointSet/src/Polyhedron.cc", + "sha256": "b254bd4b8fd1bcf0a83d2cecebee9fb77ac22017a0ed2ef5852fc8131c97c9ea", + "language": "C++", + "lines": 486, + "truncated": false, + "block": 9, + "row": 912 + }, + { + "path": "Modules/PointSet/src/RegisteredPointSet.cc", + "sha256": "2ce021617487a745c6d563d9467b7dcab906090999471a5444bad5a58fc50606", + "language": "C++", + "lines": 958, + "truncated": false, + "block": 9, + "row": 1005 + }, + { + "path": "Modules/PointSet/src/RegisteredSurface.cc", + "sha256": "ddb2b6bd08c2ba3e82629b07da52dca2e617d4ad04b1589a05c0d6814fc088cd", + "language": "C++", + "lines": 74, + "truncated": false, + "block": 9, + "row": 305 + }, + { + "path": "Modules/PointSet/src/RobustClosestPoint.cc", + "sha256": "0898bebdd92c742c58c851cc6ba98ceb06160f60989147e7e3e3dc9ca9851f42", + "language": "C++", + "lines": 204, + "truncated": false, + "block": 9, + "row": 620 + }, + { + "path": "Modules/PointSet/src/RobustPointMatch.cc", + "sha256": "4a328584727ea8f764887970d8766a22d925109c9a90236bea6992ea3e06be92", + "language": "C++", + "lines": 726, + "truncated": false, + "block": 9, + "row": 965 + }, + { + "path": "Modules/PointSet/src/SpectralDecomposition.cc", + "sha256": "0fdfd25d08e13b86ea7a36e98c7501a109b608a872111d308f0b21fcc4abe02c", + "language": "C++", + "lines": 1302, + "truncated": false, + "block": 9, + "row": 1048 + }, + { + "path": "Modules/PointSet/src/SpectralMatch.cc", + "sha256": "5503be35e77802a2b0346f9abbf27b30e583b18f2138668eee424a1a7787dd1b", + "language": "C++", + "lines": 368, + "truncated": false, + "block": 9, + "row": 820 + }, + { + "path": "Modules/PointSet/src/Stripper.cc", + "sha256": "87625f9125166d381fe011361428a438ce6fe2ba6a83a4b47458e1759af594ad", + "language": "C++", + "lines": 178, + "truncated": false, + "block": 9, + "row": 552 + }, + { + "path": "Modules/PointSet/src/SurfaceBoundary.cc", + "sha256": "ca2ae0ee9b9ffc68760203b4126ca61da4140e279b84a707f6b1f7f841e78fd7", + "language": "C++", + "lines": 281, + "truncated": false, + "block": 9, + "row": 693 + }, + { + "path": "Modules/PointSet/src/SurfaceCollisions.cc", + "sha256": "476d655fc3539278e3dee455895ed140795ad9c5d4ad3cc345aa922a366fc10e", + "language": "C++", + "lines": 796, + "truncated": false, + "block": 9, + "row": 1000 + }, + { + "path": "Modules/PointSet/src/SurfaceCurvature.cc", + "sha256": "5e962c999e676bccbfb078a105c55e672058ee970fbb7bc3e94d8797513753cb", + "language": "C++", + "lines": 968, + "truncated": false, + "block": 9, + "row": 1009 + }, + { + "path": "Modules/PointSet/src/SurfaceFilter.cc", + "sha256": "a865d3f5f56e9ab241afdfcd0ec6f747200e73138ad47215f237e57f3f3d91fd", + "language": "C++", + "lines": 83, + "truncated": false, + "block": 9, + "row": 322 + }, + { + "path": "Modules/PointSet/src/SurfacePatches.cc", + "sha256": "1e048a11af8edf0c6dcd3163d11a23ce3f94553e0e58f67606b7dc9bb9641d59", + "language": "C++", + "lines": 182, + "truncated": false, + "block": 9, + "row": 579 + }, + { + "path": "Modules/PointSet/src/SurfaceRemeshing.cc", + "sha256": "3c989e31b61a66699e4e274cf620f8734ff8920b96e4b0479034d700e6aa6421", + "language": "C++", + "lines": 1676, + "truncated": false, + "block": 9, + "row": 1069 + }, + { + "path": "Modules/PointSet/src/Triangle.cc", + "sha256": "ea16077f58deeb0cd731d3fb8bb8489347ad1d4375663ea625e5a1788b0819ab", + "language": "C++", + "lines": 442, + "truncated": false, + "block": 9, + "row": 840 + }, + { + "path": "Modules/PointSet/src/triangle_triangle_intersection.h", + "sha256": "a9c5bfea5b24aab76bbaaa8a366858af0b91ccef95c67a9fad88c5c33fa88e1a", + "language": "C/C++", + "lines": 576, + "truncated": false, + "block": 9, + "row": 1787 + }, + { + "path": "Modules/PointSet/test/testEdgeTable.cc", + "sha256": "b07f62220c4c3076467277f9d55d702835261c8b6edda4f35530af42a95d0a46", + "language": "C++", + "lines": 123, + "truncated": false, + "block": 9, + "row": 503 + }, + { + "path": "Modules/Registration/example/DummyImageSimilarity.cc", + "sha256": "e1a63469da8316d7b3081a63f0571cacf6f156d065c54a08c558c0f8ccd9ea63", + "language": "C++", + "lines": 258, + "truncated": false, + "block": 9, + "row": 747 + }, + { + "path": "Modules/Registration/example/DummyImageSimilarity.h", + "sha256": "535c00db32ff258b8711b5ebeb16856b6f814436db3cc94c179c5d0925f3e6b7", + "language": "C/C++", + "lines": 178, + "truncated": false, + "block": 9, + "row": 1653 + }, + { + "path": "Modules/Registration/include/mirtk/CosineOfNormalizedGradientField.h", + "sha256": "315d2d9ed06291d96216218508cfa40dcae29f6f210bbd2fdb5535311ae51dba", + "language": "C/C++", + "lines": 99, + "truncated": false, + "block": 9, + "row": 1400 + }, + { + "path": "Modules/Registration/include/mirtk/CurrentsDistance.h", + "sha256": "f5ee57fadd89cfcc6224a8fbfbdb463c19e01d14e354c0678cbefbc278750988", + "language": "C/C++", + "lines": 155, + "truncated": false, + "block": 9, + "row": 1526 + }, + { + "path": "Modules/Registration/include/mirtk/DataFidelity.h", + "sha256": "d44959b743e3d38965703bfabef6f81a69ce6637c0a395e4b41dcf4cb3d4cdb4", + "language": "C/C++", + "lines": 70, + "truncated": false, + "block": 9, + "row": 1250 + }, + { + "path": "Modules/Registration/include/mirtk/FiducialRegistrationError.h", + "sha256": "64d6f8f141b680156299549b0ad77aef7e3899a31960fda2e37d8f75309b86f9", + "language": "C/C++", + "lines": 57, + "truncated": false, + "block": 9, + "row": 1227 + }, + { + "path": "Modules/Registration/include/mirtk/GenericRegistrationDebugger.h", + "sha256": "ca63b7c722a0d861356313632fb1d1643d8d3e173e0ca60bbac042d7680cdc13", + "language": "C/C++", + "lines": 101, + "truncated": false, + "block": 9, + "row": 1369 + }, + { + "path": "Modules/Registration/include/mirtk/GenericRegistrationFilter.h", + "sha256": "670449b88d01cc2a42fe7ddc6fbbc49fb7cf8e24274dd9c2bf2bae9a10065ad0", + "language": "C/C++", + "lines": 694, + "truncated": false, + "block": 9, + "row": 1814 + }, + { + "path": "Modules/Registration/include/mirtk/GenericRegistrationLogger.h", + "sha256": "596da7e69e80c91c779770cf917f3fd5cf9d60b1f0d69038b7b5887b3c94fc47", + "language": "C/C++", + "lines": 87, + "truncated": false, + "block": 9, + "row": 1362 + }, + { + "path": "Modules/Registration/include/mirtk/GradientFieldSimilarity.h", + "sha256": "c09d7690343b6f7f59bc2939ebcca7c87efe5908b468ead2846d13dbe3125131", + "language": "C/C++", + "lines": 131, + "truncated": false, + "block": 9, + "row": 1538 + }, + { + "path": "Modules/Registration/include/mirtk/HistogramImageSimilarity.h", + "sha256": "e049fb7ba2d70da42f3809dbacdd43501eee2324560840ebd58657937864027c", + "language": "C/C++", + "lines": 175, + "truncated": false, + "block": 9, + "row": 1595 + }, + { + "path": "Modules/Registration/include/mirtk/ImageCovariance.h", + "sha256": "bf4b43e7a4f99bba0a4a550bdbece9aaf74039502f35e422ac2131fbd5e94ea5", + "language": "C/C++", + "lines": 72, + "truncated": false, + "block": 9, + "row": 1268 + }, + { + "path": "Modules/Registration/include/mirtk/ImageSimilarity.h", + "sha256": "482ff983adcef996e9ebfa0135bc7bc541cf20aa749813d25a703f913f0bba4d", + "language": "C/C++", + "lines": 514, + "truncated": false, + "block": 9, + "row": 1803 + }, + { + "path": "Modules/Registration/include/mirtk/IntensityCorrelationRatioXY.h", + "sha256": "2b7f434c1a6549ce45eff9530fa581c7f042d6d3bdeb091ffa43ccf11d247af4", + "language": "C/C++", + "lines": 64, + "truncated": false, + "block": 9, + "row": 1247 + }, + { + "path": "Modules/Registration/include/mirtk/IntensityCorrelationRatioYX.h", + "sha256": "c85edf4f2c4e86bd76aaf8f80df566e01e95a7fba3254cecddc56834af75db4f", + "language": "C/C++", + "lines": 64, + "truncated": false, + "block": 9, + "row": 1248 + }, + { + "path": "Modules/Registration/include/mirtk/IntensityCrossCorrelation.h", + "sha256": "3592736fd1affc18ce3665428be338f86a4da4f814a11bbbe194d566e7d3ad11", + "language": "C/C++", + "lines": 59, + "truncated": false, + "block": 9, + "row": 1240 + }, + { + "path": "Modules/Registration/include/mirtk/JointImageEntropy.h", + "sha256": "895e19a1b3a291eb7be8859065f0c2a86c43f3043bc6cc1b1e01c9355b37186e", + "language": "C/C++", + "lines": 72, + "truncated": false, + "block": 9, + "row": 1276 + }, + { + "path": "Modules/Registration/include/mirtk/LabelConsistency.h", + "sha256": "1555a5886613d9f11bc32bb2b8f27b5e00dcc7937b73bfd406916bf9524b468a", + "language": "C/C++", + "lines": 70, + "truncated": false, + "block": 9, + "row": 1258 + }, + { + "path": "Modules/Registration/include/mirtk/MeanSquaredDisplacementError.h", + "sha256": "ac383bb812b5207610ca23cd9510e55bc9cad2ecc9897a1965e9a82761567e78", + "language": "C/C++", + "lines": 119, + "truncated": false, + "block": 9, + "row": 1495 + }, + { + "path": "Modules/Registration/include/mirtk/MutualImageInformation.h", + "sha256": "37f5ee419eaa5c33919e2e47d491c6a1ff5863f04300dcfc217a4446c599298b", + "language": "C/C++", + "lines": 72, + "truncated": false, + "block": 9, + "row": 1283 + }, + { + "path": "Modules/Registration/include/mirtk/NormalizedGradientFieldSimilarity.h", + "sha256": "186602256af3879111447c209ec1b964262aa6bd8e89bf0a282a119b88d77b28", + "language": "C/C++", + "lines": 98, + "truncated": false, + "block": 9, + "row": 1399 + }, + { + "path": "Modules/Registration/include/mirtk/NormalizedIntensityCrossCorrelation.h", + "sha256": "dfaf76e56f723b12bc88e24ae953928f869d955caf1aa1793564866dc325f2ef", + "language": "C/C++", + "lines": 209, + "truncated": false, + "block": 9, + "row": 1633 + }, + { + "path": "Modules/Registration/include/mirtk/NormalizedMutualImageInformation.h", + "sha256": "d67793f2449eb2288c0514cc756888b21f5800c3d6e7101d66a4657ee7fd5fbc", + "language": "C/C++", + "lines": 108, + "truncated": false, + "block": 9, + "row": 1443 + }, + { + "path": "Modules/Registration/include/mirtk/PeakSignalToNoiseRatio.h", + "sha256": "39e7f4e573a2440caeca2e86cb705f6bd257ff3eefd93ca9d40ab79704b15b58", + "language": "C/C++", + "lines": 72, + "truncated": false, + "block": 9, + "row": 1285 + }, + { + "path": "Modules/Registration/include/mirtk/PointCorrespondenceDistance.h", + "sha256": "81ec018662c57a1246125c0fcf194f0674da59ac4a183350edc67b3bdd3fc42f", + "language": "C/C++", + "lines": 266, + "truncated": false, + "block": 9, + "row": 1706 + }, + { + "path": "Modules/Registration/include/mirtk/PointSetDistance.h", + "sha256": "cdce57b22da8ddf2188672c6dbf9969b367a306a1153b543e4525755a87f58e7", + "language": "C/C++", + "lines": 206, + "truncated": false, + "block": 9, + "row": 1661 + }, + { + "path": "Modules/Registration/include/mirtk/PointSetDistanceMeasure.h", + "sha256": "3038fe673d80e74ab804273d0719fe49bcb3230bb5a228888c871eac2a236a7d", + "language": "C/C++", + "lines": 72, + "truncated": false, + "block": 9, + "row": 1320 + }, + { + "path": "Modules/Registration/include/mirtk/Registration.h", + "sha256": "bcf725bfa1a14121cef4322fca3db6f4efcc90dbce86247321ceae38494d8b52", + "language": "C/C++", + "lines": 62, + "truncated": false, + "block": 9, + "row": 1304 + }, + { + "path": "Modules/Registration/include/mirtk/RegistrationEnergy.h", + "sha256": "eb406c2fc36a76fa224afd42b5f508688215e84821fbe196df31846d770cf153", + "language": "C/C++", + "lines": 344, + "truncated": false, + "block": 9, + "row": 1744 + }, + { + "path": "Modules/Registration/include/mirtk/RegistrationFilter.h", + "sha256": "deb95a82edd60aaac23bef85c2519bbd426c4fcec8fe0ccf04a012e23b467fb2", + "language": "C/C++", + "lines": 148, + "truncated": false, + "block": 9, + "row": 1463 + }, + { + "path": "Modules/Registration/include/mirtk/SimilarityMeasure.h", + "sha256": "a593078783f3c38d3ed91a13dcef6e8e75ed9680661fec1d3f7cb856770a7db2", + "language": "C/C++", + "lines": 91, + "truncated": false, + "block": 9, + "row": 1439 + }, + { + "path": "Modules/Registration/include/mirtk/SumOfSquaredIntensityDifferences.h", + "sha256": "7bbb3b74fba009fa4ceff8d2e9894e390d26f317e0110290db0d62ed763bb059", + "language": "C/C++", + "lines": 115, + "truncated": false, + "block": 9, + "row": 1466 + }, + { + "path": "Modules/Registration/include/mirtk/SurfaceDistance.h", + "sha256": "c0b173a4ce41416c29b6cf34e16c26fb16dd40d2826752e0c2d781c6b014bc84", + "language": "C/C++", + "lines": 124, + "truncated": false, + "block": 9, + "row": 1497 + }, + { + "path": "Modules/Registration/src/CosineOfNormalizedGradientField.cc", + "sha256": "703b305f2a9a59465ef121203ee6a4c19d50a1a90a18510c0e00b84bc04ac5c8", + "language": "C++", + "lines": 295, + "truncated": false, + "block": 9, + "row": 760 + }, + { + "path": "Modules/Registration/src/CurrentsDistance.cc", + "sha256": "32bebd0ea93783f3b4788681d55a8c1e279824bd0c4e0de50b9304073c508fba", + "language": "C++", + "lines": 704, + "truncated": false, + "block": 9, + "row": 960 + }, + { + "path": "Modules/Registration/src/DataFidelity.cc", + "sha256": "f71abe794fee35658d48011972cf05fda111185898f0340646fee1e919239302", + "language": "C++", + "lines": 74, + "truncated": false, + "block": 9, + "row": 329 + }, + { + "path": "Modules/Registration/src/FiducialRegistrationError.cc", + "sha256": "b82fbfbf4efe82b0c384bad6c89975369052f03e905c26e648c1f31783f051af", + "language": "C++", + "lines": 69, + "truncated": false, + "block": 9, + "row": 313 + }, + { + "path": "Modules/Registration/src/GenericRegistrationDebugger.cc", + "sha256": "e2ed7e497aa183f3e63e1ec252d988ae23c27f2f01945031f863687b12b6e708", + "language": "C++", + "lines": 447, + "truncated": false, + "block": 9, + "row": 876 + }, + { + "path": "Modules/Registration/src/GenericRegistrationFilter.cc", + "sha256": "e6d8f320c285f737df872c6b36033da4e2081520e13831b98d40a1a75a8dc742", + "language": "C++", + "lines": 4770, + "truncated": false, + "block": 9, + "row": 1105 + }, + { + "path": "Modules/Registration/src/GenericRegistrationLogger.cc", + "sha256": "406e71c54a819eb4e3be500ae642fa33425dc0fc76a659a14185089da9b4ff76", + "language": "C++", + "lines": 570, + "truncated": false, + "block": 9, + "row": 936 + }, + { + "path": "Modules/Registration/src/GradientFieldSimilarity.cc", + "sha256": "68e57011decec9cf6e53fc567525cbad5f8fc92a531c199d87157d93b8fce5ad", + "language": "C++", + "lines": 669, + "truncated": false, + "block": 9, + "row": 971 + }, + { + "path": "Modules/Registration/src/HistogramImageSimilarity.cc", + "sha256": "9fc3c770a1838f469d0b448b11110809e45156c5bdd759b8c1b13bd0c74ceb0c", + "language": "C++", + "lines": 408, + "truncated": false, + "block": 9, + "row": 871 + }, + { + "path": "Modules/Registration/src/ImageCovariance.cc", + "sha256": "a42479eeb7f4299bfd1d9a79030c99a51dcf6dbabcbd4d7420b9032fa288f372", + "language": "C++", + "lines": 72, + "truncated": false, + "block": 9, + "row": 294 + }, + { + "path": "Modules/Registration/src/ImageSimilarity.cc", + "sha256": "078dc7b22ab2fec0f90d10df88b581a2ac5de9c4c1685f76c7d8f7303adfc228", + "language": "C++", + "lines": 899, + "truncated": false, + "block": 9, + "row": 996 + }, + { + "path": "Modules/Registration/src/IntensityCorrelationRatioXY.cc", + "sha256": "4b0c72c842b2be6e95babf693919e79c4241725bb21a7721ac8e256168d28779", + "language": "C++", + "lines": 68, + "truncated": false, + "block": 9, + "row": 288 + }, + { + "path": "Modules/Registration/src/IntensityCorrelationRatioYX.cc", + "sha256": "332b7b12258493503af0969bf9412062f0b6f0f982a58ba3d931e69fdc2bdb63", + "language": "C++", + "lines": 68, + "truncated": false, + "block": 9, + "row": 287 + }, + { + "path": "Modules/Registration/src/IntensityCrossCorrelation.cc", + "sha256": "228096b8cc100b0629be1930d8557fc8368fc4465bdb041e774fcc4dbcc8dabc", + "language": "C++", + "lines": 58, + "truncated": false, + "block": 9, + "row": 256 + }, + { + "path": "Modules/Registration/src/JointImageEntropy.cc", + "sha256": "3177a6c079f923c94bd2eea7b081fc4a364ff1d7343d30d2e8e88181a40db675", + "language": "C++", + "lines": 72, + "truncated": false, + "block": 9, + "row": 300 + }, + { + "path": "Modules/Registration/src/LabelConsistency.cc", + "sha256": "edeff4694e2c0ae5123d947493742d8b19911c1d849e744a891ffc56cb4f70d3", + "language": "C++", + "lines": 98, + "truncated": false, + "block": 9, + "row": 399 + }, + { + "path": "Modules/Registration/src/MeanSquaredDisplacementError.cc", + "sha256": "f1de3fcfc73ed3cf79885c55bb37468405c36df97cac60415aeae5d1fc3bf3ab", + "language": "C++", + "lines": 203, + "truncated": false, + "block": 9, + "row": 646 + }, + { + "path": "Modules/Registration/src/MutualImageInformation.cc", + "sha256": "e4e401bdb1d7a59371369f2a4f44a3c739b7292e754ec2c484091f323a1117c9", + "language": "C++", + "lines": 74, + "truncated": false, + "block": 9, + "row": 309 + }, + { + "path": "Modules/Registration/src/NormalizedGradientFieldSimilarity.cc", + "sha256": "3e44c6f160780a0a46053babf424bd1d53df6ab810917ef59ac5742d45a3ed0d", + "language": "C++", + "lines": 131, + "truncated": false, + "block": 9, + "row": 502 + }, + { + "path": "Modules/Registration/src/NormalizedIntensityCrossCorrelation.cc", + "sha256": "9fcc19ce78e7575fc70cd4fdf19ec82bc19bcf631787d61decd3436939a5cdb1", + "language": "C++", + "lines": 1308, + "truncated": false, + "block": 9, + "row": 1046 + }, + { + "path": "Modules/Registration/src/NormalizedMutualImageInformation.cc", + "sha256": "c613bea6e8bb61b732e3b174c81d4cf5bf2720b09cac3b97a9d846e85bcb8ae1", + "language": "C++", + "lines": 269, + "truncated": false, + "block": 9, + "row": 735 + }, + { + "path": "Modules/Registration/src/PeakSignalToNoiseRatio.cc", + "sha256": "f1429737aadf03ad089b072a0f50db86c160c0b27d9eea3d5bb0a9e8ed0c48ac", + "language": "C++", + "lines": 80, + "truncated": false, + "block": 9, + "row": 342 + }, + { + "path": "Modules/Registration/src/PointCorrespondenceDistance.cc", + "sha256": "e449fa7819b916469b46703c4a4906ee6a2808bc6c0c9ceca4321a15893cb82b", + "language": "C++", + "lines": 836, + "truncated": false, + "block": 9, + "row": 997 + }, + { + "path": "Modules/Registration/src/PointSetDistance.cc", + "sha256": "a7b3141bdcf76ff4177223eb494063dc5ed83525cd38f36bddb8b18d89dee11e", + "language": "C++", + "lines": 339, + "truncated": false, + "block": 9, + "row": 806 + }, + { + "path": "Modules/Registration/src/RegistrationConfig.cc", + "sha256": "903ad76e8e31eadd854a1d073dc5c0cb722f65750ea723b7a4aa92dcdf2d18fc", + "language": "C++", + "lines": 82, + "truncated": false, + "block": 9, + "row": 366 + }, + { + "path": "Modules/Registration/src/RegistrationEnergy.cc", + "sha256": "de5c138ef5fdd3fd0cd2fbc3b500c71c1f6e0fb24c24df0793fa8f8e09360531", + "language": "C++", + "lines": 763, + "truncated": false, + "block": 9, + "row": 954 + }, + { + "path": "Modules/Registration/src/RegistrationEnergyParser.h", + "sha256": "7d5b6da4512304db2d6a48729934e8ae31e94ec137f295426ae2f9611c2a8ba8", + "language": "C/C++", + "lines": 1173, + "truncated": false, + "block": 9, + "row": 1846 + }, + { + "path": "Modules/Registration/src/SumOfSquaredIntensityDifferences.cc", + "sha256": "0b068413b8b8f2ec1bf7137082043a1e219b98cd98feb3b8edb62e46553e8d51", + "language": "C++", + "lines": 248, + "truncated": false, + "block": 9, + "row": 688 + }, + { + "path": "Modules/Registration/src/SurfaceDistance.cc", + "sha256": "b70b14a88a75a2312f23546e8daf8be6ef319e23f50c09323287ef46ceb2202e", + "language": "C++", + "lines": 200, + "truncated": false, + "block": 9, + "row": 630 + }, + { + "path": "Modules/Registration/test/testRegisteredImage.cc", + "sha256": "77fe067cb3b4deae1d664b405d56ae592876464100a1c1c632b5b9673f670a7a", + "language": "C++", + "lines": 114, + "truncated": false, + "block": 9, + "row": 444 + }, + { + "path": "Modules/Transformation/include/mirtk/AffineTransformation.h", + "sha256": "ea727616f2846ab24d2ca48ed341bc3aab1b7a86b0f4721489c060216f891e04", + "language": "C/C++", + "lines": 385, + "truncated": false, + "block": 9, + "row": 1728 + }, + { + "path": "Modules/Transformation/include/mirtk/BSplineFreeFormTransformation3D.h", + "sha256": "5e2a1c6b796230eaf9c5d675c4c3587512f4f67c0fd55decef372d4da5c2e487", + "language": "C/C++", + "lines": 686, + "truncated": false, + "block": 9, + "row": 1822 + }, + { + "path": "Modules/Transformation/include/mirtk/BSplineFreeFormTransformation4D.h", + "sha256": "4140c8954dd0cffb8fa355f94e67eb43aab2774cb15897db2dc3512575fbc802", + "language": "C/C++", + "lines": 467, + "truncated": false, + "block": 9, + "row": 1789 + }, + { + "path": "Modules/Transformation/include/mirtk/BSplineFreeFormTransformationSV.h", + "sha256": "321439e050dbf4f5d1711b32c4b860da38c4d0a9e1905edb59f7990be66f7deb", + "language": "C/C++", + "lines": 815, + "truncated": false, + "block": 9, + "row": 1831 + }, + { + "path": "Modules/Transformation/include/mirtk/BSplineFreeFormTransformationStatistical.h", + "sha256": "e7f409187cd7cbfef0d6e96a5e84a7e76282557ae2a09a30b1f2609573bd5ca9", + "language": "C/C++", + "lines": 232, + "truncated": false, + "block": 9, + "row": 1681 + }, + { + "path": "Modules/Transformation/include/mirtk/BSplineFreeFormTransformationTD.h", + "sha256": "db9bf7739cfb096a7afe7346f180b5870ee935b1fe59769cc3a8a5f44af19f83", + "language": "C/C++", + "lines": 309, + "truncated": false, + "block": 9, + "row": 1752 + }, + { + "path": "Modules/Transformation/include/mirtk/ConstraintMeasure.h", + "sha256": "a9f628f78ea6d9702e692c6fb35c22105fb4022ca4582f10ebdd67f1d45acd08", + "language": "C/C++", + "lines": 78, + "truncated": false, + "block": 9, + "row": 1409 + }, + { + "path": "Modules/Transformation/include/mirtk/EnergyTerm.h", + "sha256": "cfd7e4d2869cf8fa7bb2466f49d2cee7b0ea05dfd21d070259ce24deb249d3cb", + "language": "C/C++", + "lines": 237, + "truncated": false, + "block": 9, + "row": 1673 + }, + { + "path": "Modules/Transformation/include/mirtk/FFDIntegrationMethod.h", + "sha256": "7654cd08605e3147bc37f81c380da142234cb924eca580fc386509609a134415", + "language": "C/C++", + "lines": 108, + "truncated": false, + "block": 9, + "row": 1528 + }, + { + "path": "Modules/Transformation/include/mirtk/FluidFreeFormTransformation.h", + "sha256": "c8f22b290621315f8bd212517403548beeb5dae78a2a7484a4cc7c9544acada7", + "language": "C/C++", + "lines": 389, + "truncated": false, + "block": 9, + "row": 1785 + }, + { + "path": "Modules/Transformation/include/mirtk/FreeFormTransformation.h", + "sha256": "abec68765be8af46ee3d7e57b611253db1eacfec8236d3eb12d4516d394f4a13", + "language": "C/C++", + "lines": 1839, + "truncated": false, + "block": 9, + "row": 1864 + }, + { + "path": "Modules/Transformation/include/mirtk/FreeFormTransformation3D.h", + "sha256": "cb07494de4ea2d93789614c7782c8279beae6ec6970ac0adf623ba3249c333dd", + "language": "C/C++", + "lines": 255, + "truncated": false, + "block": 9, + "row": 1699 + }, + { + "path": "Modules/Transformation/include/mirtk/FreeFormTransformation4D.h", + "sha256": "b9939fa6fd1bfd13b5b8408da6513cfbd0eafe67f0931eae749a7a81227baf91", + "language": "C/C++", + "lines": 234, + "truncated": false, + "block": 9, + "row": 1692 + }, + { + "path": "Modules/Transformation/include/mirtk/HomogeneousTransformation.h", + "sha256": "0008fbf562a8709f794be2723cbbfba1ec80ec007a8e72fb9346ab6511e68dc6", + "language": "C/C++", + "lines": 454, + "truncated": false, + "block": 9, + "row": 1770 + }, + { + "path": "Modules/Transformation/include/mirtk/HomogeneousTransformationIterator.h", + "sha256": "14f61fccc1f0b58f610c4a48694fa31ce42784020466c332c7ee3cbeda60cc51", + "language": "C/C++", + "lines": 205, + "truncated": false, + "block": 9, + "row": 1614 + }, + { + "path": "Modules/Transformation/include/mirtk/ImageTransformation.h", + "sha256": "c21efaae3e3d2f0d63bfc6fa2c7b45ba83b00919113d7595b607dde1acbafe4d", + "language": "C/C++", + "lines": 176, + "truncated": false, + "block": 9, + "row": 1588 + }, + { + "path": "Modules/Transformation/include/mirtk/InverseAffineTransformation.h", + "sha256": "d3c6a273fa830131d39d37e152470b39e7db1010cf61486d26ad49a03ed168a9", + "language": "C/C++", + "lines": 99, + "truncated": false, + "block": 9, + "row": 1454 + }, + { + "path": "Modules/Transformation/include/mirtk/JacobianConstraint.h", + "sha256": "952e9ca9a95aa9477b2421b942fe49690d9969c95a3d6661e30ba642a770bfa9", + "language": "C/C++", + "lines": 217, + "truncated": false, + "block": 9, + "row": 1657 + }, + { + "path": "Modules/Transformation/include/mirtk/LinearElasticityConstraint.h", + "sha256": "c89a6faac3a1e937285caf0ce75197c6d12969657ff0913992d41a63eb507fd8", + "language": "C/C++", + "lines": 118, + "truncated": false, + "block": 9, + "row": 1459 + }, + { + "path": "Modules/Transformation/include/mirtk/LinearFreeFormTransformation3D.h", + "sha256": "7cc516d68ce11871311543c80e8bd4e1f7b23721ffe48a0fe79d861ce3bccfd0", + "language": "C/C++", + "lines": 294, + "truncated": false, + "block": 9, + "row": 1717 + }, + { + "path": "Modules/Transformation/include/mirtk/LinearFreeFormTransformation4D.h", + "sha256": "69939d01942ed5e1d35b56f601d1735425a5c5d72ef61149aba2601a959ab494", + "language": "C/C++", + "lines": 301, + "truncated": false, + "block": 9, + "row": 1724 + }, + { + "path": "Modules/Transformation/include/mirtk/LinearFreeFormTransformationTD.h", + "sha256": "939abce5fdabc79780294efc31ea8f8915df46c7fe6748a18d1de6eeae75e65c", + "language": "C/C++", + "lines": 243, + "truncated": false, + "block": 9, + "row": 1694 + }, + { + "path": "Modules/Transformation/include/mirtk/LogJacobianConstraint.h", + "sha256": "e688725932e985f4abfdd77567fcf16fca507ad6b1a93aaa7b402e3ed0ddb14d", + "language": "C/C++", + "lines": 119, + "truncated": false, + "block": 9, + "row": 1464 + }, + { + "path": "Modules/Transformation/include/mirtk/MultiLevelFreeFormTransformation.h", + "sha256": "b8872708dd8feee6c187aca99edfbda8693f34b1c6a0545617949453c3175d7c", + "language": "C/C++", + "lines": 313, + "truncated": false, + "block": 9, + "row": 1766 + }, + { + "path": "Modules/Transformation/include/mirtk/MultiLevelStationaryVelocityTransformation.h", + "sha256": "38afb96189b785c4b3d9006e9cb4962b336af0252c43383df3c87d713c21e0fb", + "language": "C/C++", + "lines": 656, + "truncated": false, + "block": 9, + "row": 1811 + }, + { + "path": "Modules/Transformation/include/mirtk/MultiLevelTransformation.h", + "sha256": "af578254d11944338c1b47122014584e4df198afa20c86ed6352478a77ec266a", + "language": "C/C++", + "lines": 1176, + "truncated": false, + "block": 9, + "row": 1853 + }, + { + "path": "Modules/Transformation/include/mirtk/MultipleVoxelTransformation.h", + "sha256": "18da971c71bf88739db8731a0034ca38ee23b1a24fb79e832de740d0c001403a", + "language": "C/C++", + "lines": 1477, + "truncated": false, + "block": 9, + "row": 1856 + }, + { + "path": "Modules/Transformation/include/mirtk/NegJacobianConstraint.h", + "sha256": "5d1c8ff1dc76f943a7387401ec4ed410f8cb8db21c25db70fa0397fbd2124be3", + "language": "C/C++", + "lines": 137, + "truncated": false, + "block": 9, + "row": 1555 + }, + { + "path": "Modules/Transformation/include/mirtk/PartialAffineTransformation.h", + "sha256": "f0ada94bfb76d61e28452b0ee41292d2b08d8aea8a03124ad410370ed9d8e5a6", + "language": "C/C++", + "lines": 107, + "truncated": false, + "block": 9, + "row": 1480 + }, + { + "path": "Modules/Transformation/include/mirtk/PartialBSplineFreeFormTransformationSV.h", + "sha256": "18afbe91c0d500286225c9fcbba12864ffbae574f4b9f0dc6e93b3742f01463b", + "language": "C/C++", + "lines": 264, + "truncated": false, + "block": 9, + "row": 1719 + }, + { + "path": "Modules/Transformation/include/mirtk/PartialMultiLevelStationaryVelocityTransformation.h", + "sha256": "ecef086f9acc18d607e551c5b4b247dea5ac4ecfba91a8c138793e17ce6e5e0c", + "language": "C/C++", + "lines": 276, + "truncated": false, + "block": 9, + "row": 1721 + }, + { + "path": "Modules/Transformation/include/mirtk/RegisteredImage.h", + "sha256": "dbf3aae22f39e82470726fdc9dfd6d9c8fbf52814516be3edeb99bf75dab8f36", + "language": "C/C++", + "lines": 346, + "truncated": false, + "block": 9, + "row": 1749 + }, + { + "path": "Modules/Transformation/include/mirtk/RigidTransformation.h", + "sha256": "41ce39b6348e234ac1cc0066e687789bcf8b82ce36112d0ca00bdd07ba4d1efd", + "language": "C/C++", + "lines": 312, + "truncated": false, + "block": 9, + "row": 1702 + }, + { + "path": "Modules/Transformation/include/mirtk/SimilarityTransformation.h", + "sha256": "90d10994bcfb765680abdea416be8202ffe612b7b093745451a9e06e4c786cba", + "language": "C/C++", + "lines": 158, + "truncated": false, + "block": 9, + "row": 1580 + }, + { + "path": "Modules/Transformation/include/mirtk/SmoothnessConstraint.h", + "sha256": "367bfab445b0b4158f18a8112bb45c214e62ce7146887072b4662a9a0e316c2e", + "language": "C/C++", + "lines": 108, + "truncated": false, + "block": 9, + "row": 1434 + }, + { + "path": "Modules/Transformation/include/mirtk/SparsityConstraint.h", + "sha256": "b598bb4fbb4b7057f5d31511fc3581d0101116b659f240752ea72abc9a16973e", + "language": "C/C++", + "lines": 77, + "truncated": false, + "block": 9, + "row": 1338 + }, + { + "path": "Modules/Transformation/include/mirtk/TopologyPreservationConstraint.h", + "sha256": "d6d2d9e7c77ab6c26cbba321ed5a3b6569d08d066be58528f99358141bbb3ed1", + "language": "C/C++", + "lines": 52, + "truncated": false, + "block": 9, + "row": 1213 + }, + { + "path": "Modules/Transformation/include/mirtk/Transformation.h", + "sha256": "e20efaada53aa9d9ec12a7093f70c43daee998e8ec5bb8e5eb81ddb4847a2843", + "language": "C/C++", + "lines": 1070, + "truncated": false, + "block": 9, + "row": 1849 + }, + { + "path": "Modules/Transformation/include/mirtk/TransformationApproximationError.h", + "sha256": "49dd1e8b3c235ad9c20f0b18ebae8128dd0b2391814ca344188f6a895a6ce510", + "language": "C/C++", + "lines": 169, + "truncated": false, + "block": 9, + "row": 1600 + }, + { + "path": "Modules/Transformation/include/mirtk/TransformationConfig.h", + "sha256": "eb901061e1e3a0d6837d67de741676af4844433bb846975de213a4802e5812e0", + "language": "C/C++", + "lines": 35, + "truncated": false, + "block": 9, + "row": 1177 + }, + { + "path": "Modules/Transformation/include/mirtk/TransformationConstraint.h", + "sha256": "c62f2b3ebfb423102f6277824e9de9a91a7264eea535cc90bf6ae31c165a62c8", + "language": "C/C++", + "lines": 140, + "truncated": false, + "block": 9, + "row": 1532 + }, + { + "path": "Modules/Transformation/include/mirtk/TransformationJacobian.h", + "sha256": "96d4ea1c49cafdaca545b0660913c79484dc7dfd577582d5f72f4c5f62ca9fba", + "language": "C/C++", + "lines": 388, + "truncated": false, + "block": 9, + "row": 1737 + }, + { + "path": "Modules/Transformation/include/mirtk/TransformationModel.h", + "sha256": "2663b7bd369085afce62ca96ac65fb77a0e639a798920f5c2b065d4231995a63", + "language": "C/C++", + "lines": 281, + "truncated": false, + "block": 9, + "row": 1712 + }, + { + "path": "Modules/Transformation/include/mirtk/TransformationType.h", + "sha256": "71702c2012320403133bea5bc58c90eadadf629db508c5f2739fe65fb29248cb", + "language": "C/C++", + "lines": 123, + "truncated": false, + "block": 9, + "row": 1610 + }, + { + "path": "Modules/Transformation/include/mirtk/Transformations.h", + "sha256": "04885d463dd619e3a74a6b3277af22962651b8ffd7d8c88980b64eed45a57252", + "language": "C/C++", + "lines": 63, + "truncated": false, + "block": 9, + "row": 1317 + }, + { + "path": "Modules/Transformation/include/mirtk/VolumePreservationConstraint.h", + "sha256": "4d2770eb55b4bebe04a7413e5e027701b1f03568500e5c2e11aeb3197b9fe135", + "language": "C/C++", + "lines": 54, + "truncated": false, + "block": 9, + "row": 1209 + }, + { + "path": "Modules/Transformation/src/AffineTransformation.cc", + "sha256": "c39312eae817d7a2416c4d3ec41a06806711d6447cb9f8a871d998facfb450f9", + "language": "C++", + "lines": 731, + "truncated": false, + "block": 9, + "row": 976 + }, + { + "path": "Modules/Transformation/src/BSplineFreeFormTransformation3D.cc", + "sha256": "7cc065e3b758fb4c432ed5d3192ca36e51b2e1859bcc07fe4bdec97bed08c745", + "language": "C++", + "lines": 2163, + "truncated": false, + "block": 9, + "row": 1081 + }, + { + "path": "Modules/Transformation/src/BSplineFreeFormTransformation4D.cc", + "sha256": "ea5d159f9832e1a6acd80d433b11b0432e5f73d5562b2ab6c62f31db981e6969", + "language": "C++", + "lines": 1408, + "truncated": false, + "block": 9, + "row": 1056 + }, + { + "path": "Modules/Transformation/src/BSplineFreeFormTransformationSV.cc", + "sha256": "1e424c74fc4d970b82f93a9507be9f5168cc6f6676bc4228767458cc8a93d54c", + "language": "C++", + "lines": 1727, + "truncated": false, + "block": 9, + "row": 1077 + }, + { + "path": "Modules/Transformation/src/BSplineFreeFormTransformationStatistical.cc", + "sha256": "45fc0a9eec1247faf31b25002ca4f33063eb10c637337db5752aa995e1cab9cf", + "language": "C++", + "lines": 498, + "truncated": false, + "block": 9, + "row": 902 + }, + { + "path": "Modules/Transformation/src/BSplineFreeFormTransformationTD.cc", + "sha256": "235f25fa0a765768824099434b7db27b898483815a1c41675bc3ec41f98a41b5", + "language": "C++", + "lines": 540, + "truncated": false, + "block": 9, + "row": 946 + }, + { + "path": "Modules/Transformation/src/EnergyTerm.cc", + "sha256": "1696ab64b2218ec1cb471f1966ad94b60fef7c2865174d126d01aedfa4802271", + "language": "C++", + "lines": 298, + "truncated": false, + "block": 9, + "row": 729 + }, + { + "path": "Modules/Transformation/src/FluidFreeFormTransformation.cc", + "sha256": "2316f8c282073ee05e7c67ba7e38755a3d2bf0a131590559ef7630439d3d1f1f", + "language": "C++", + "lines": 1158, + "truncated": false, + "block": 9, + "row": 1035 + }, + { + "path": "Modules/Transformation/src/FreeFormTransformation.cc", + "sha256": "a7334eb97dc91ee5f00f9a37c51c1a272f7ae997b31e0e35c5dbfcc4b228b168", + "language": "C++", + "lines": 1346, + "truncated": false, + "block": 9, + "row": 1051 + }, + { + "path": "Modules/Transformation/src/FreeFormTransformation3D.cc", + "sha256": "7f83d7869206d47db26769c6ab281356a7c9d7ae202337788b803d1d6d6fe6b0", + "language": "C++", + "lines": 654, + "truncated": false, + "block": 9, + "row": 977 + }, + { + "path": "Modules/Transformation/src/FreeFormTransformation4D.cc", + "sha256": "044c937d9f979987ce9adccb9e2897ce1a9fcd5d2125b459b0d1b0fd370e1d4b", + "language": "C++", + "lines": 421, + "truncated": false, + "block": 9, + "row": 915 + }, + { + "path": "Modules/Transformation/src/FreeFormTransformationIntegration.h", + "sha256": "be779ddc1a23b5f07a00c28394ad94a05bb625b79511540a17a4be851a42e84d", + "language": "C/C++", + "lines": 49, + "truncated": false, + "block": 9, + "row": 1272 + }, + { + "path": "Modules/Transformation/src/FreeFormTransformationRungeKutta.cc", + "sha256": "f899bc3c2b3afeb97c421f32657c31e523bfb576816cb978dab1657b7ad28c6c", + "language": "C++", + "lines": 154, + "truncated": false, + "block": 9, + "row": 658 + }, + { + "path": "Modules/Transformation/src/FreeFormTransformationRungeKutta.h", + "sha256": "4a9578ac546293a1e791f364fb3a3f5d48c4a2702d1b0ab8238728af3f7095d3", + "language": "C/C++", + "lines": 823, + "truncated": false, + "block": 9, + "row": 1836 + }, + { + "path": "Modules/Transformation/src/HomogeneousTransformation.cc", + "sha256": "45fb6ca6bf33ff485b72dc429abb032c18c528724703b9dcb5b40b18a2790ba3", + "language": "C++", + "lines": 546, + "truncated": false, + "block": 9, + "row": 904 + }, + { + "path": "Modules/Transformation/src/ImageTransformation.cc", + "sha256": "b785da86ae2bf1cbaa11d256a51d4dbda685f27cd742852b32076ce3653654bb", + "language": "C++", + "lines": 508, + "truncated": false, + "block": 9, + "row": 901 + }, + { + "path": "Modules/Transformation/src/InverseAffineTransformation.cc", + "sha256": "6f33c13afd1cc0d07ce2397b702083518adbb09afc21525422d6b2b2eb155a03", + "language": "C++", + "lines": 245, + "truncated": false, + "block": 9, + "row": 680 + }, + { + "path": "Modules/Transformation/src/JacobianConstraint.cc", + "sha256": "9bae6062a1d2736d4f8c2c68cf1ac1d2aa51ac482eede7ab93c8c3905d7e1a2a", + "language": "C++", + "lines": 2375, + "truncated": false, + "block": 9, + "row": 1094 + }, + { + "path": "Modules/Transformation/src/LinearElasticityConstraint.cc", + "sha256": "fc2e00a826068de64c9ca5103e76bc5ce6c7cb48c64bb2ba412a9d9ea918abe7", + "language": "C++", + "lines": 1034, + "truncated": false, + "block": 9, + "row": 1022 + }, + { + "path": "Modules/Transformation/src/LinearFreeFormTransformation3D.cc", + "sha256": "f103fe82574d0a724543b8effe48b585e854e9b43797bf18afdb982cd7336dea", + "language": "C++", + "lines": 505, + "truncated": false, + "block": 9, + "row": 866 + }, + { + "path": "Modules/Transformation/src/LinearFreeFormTransformation4D.cc", + "sha256": "8b09521cbf029fdd5cb3c3a7e8ffbba62d8e84ae7680723e4348b7ecc9ab552e", + "language": "C++", + "lines": 547, + "truncated": false, + "block": 9, + "row": 888 + }, + { + "path": "Modules/Transformation/src/LinearFreeFormTransformationTD.cc", + "sha256": "d46bf8376b387faa5fe1986c513d7af8699ecf4c2be4fd1eacfdc26ff4d0a4ad", + "language": "C++", + "lines": 301, + "truncated": false, + "block": 9, + "row": 739 + }, + { + "path": "Modules/Transformation/src/LogJacobianConstraint.cc", + "sha256": "9a6027154b7ceacf84873c0582e7e59f191c65c4c7d86e8a85b48ea913053497", + "language": "C++", + "lines": 79, + "truncated": false, + "block": 9, + "row": 347 + }, + { + "path": "Modules/Transformation/src/MultiLevelFreeFormTransformation.cc", + "sha256": "7095e7ca9759693cb265f3ea9ee1cc4eb803855687fb7bdd2fb3ce2705ef761c", + "language": "C++", + "lines": 776, + "truncated": false, + "block": 9, + "row": 966 + }, + { + "path": "Modules/Transformation/src/MultiLevelStationaryVelocityTransformation.cc", + "sha256": "8decbca4cf2b737733a816b3380f369accbbf1b0aec157ba2cd0e12a0c04eeda", + "language": "C++", + "lines": 383, + "truncated": false, + "block": 9, + "row": 848 + }, + { + "path": "Modules/Transformation/src/MultiLevelTransformation.cc", + "sha256": "92784c234f09574319c162ce7bd2706e00ea3020982539e3e490b8b16f072ac8", + "language": "C++", + "lines": 1048, + "truncated": false, + "block": 9, + "row": 1018 + }, + { + "path": "Modules/Transformation/src/NegJacobianConstraint.cc", + "sha256": "be5d5af2ab57165565ecde0a6edd2dc99609b9072eccd711faa65ea811115a0d", + "language": "C++", + "lines": 88, + "truncated": false, + "block": 9, + "row": 375 + }, + { + "path": "Modules/Transformation/src/PartialAffineTransformation.cc", + "sha256": "598510872a8e560978c3e5c02990546a98696057e2381765cd3977fcc2d0b6b5", + "language": "C++", + "lines": 137, + "truncated": false, + "block": 9, + "row": 536 + }, + { + "path": "Modules/Transformation/src/PartialBSplineFreeFormTransformationSV.cc", + "sha256": "2df23f8e72e4fa7e68522150d25799d8b5938435ba0e355928cdd4c6f5855a45", + "language": "C++", + "lines": 331, + "truncated": false, + "block": 9, + "row": 819 + }, + { + "path": "Modules/Transformation/src/PartialMultiLevelStationaryVelocityTransformation.cc", + "sha256": "8f0679fd3bc53195d4ad87df2d5d13e0ed79da954dee846ccacb075c6eac8513", + "language": "C++", + "lines": 362, + "truncated": false, + "block": 9, + "row": 855 + }, + { + "path": "Modules/Transformation/src/RegisteredImage.cc", + "sha256": "3977efdd6d5701be575057a3ae0f8478b834ac04234698dfdc4a297fdd1aa63e", + "language": "C++", + "lines": 1769, + "truncated": false, + "block": 9, + "row": 1076 + }, + { + "path": "Modules/Transformation/src/RigidTransformation.cc", + "sha256": "0aca74d2d2a3f92174b93208cabe1eeb29afb5676d92df99a18a2111658ec5f1", + "language": "C++", + "lines": 407, + "truncated": false, + "block": 9, + "row": 824 + }, + { + "path": "Modules/Transformation/src/SimilarityTransformation.cc", + "sha256": "de7c924c0a6e0bec4075af9120e0ff550110a479a5e428ebec8a76a95b9eba07", + "language": "C++", + "lines": 373, + "truncated": false, + "block": 9, + "row": 810 + }, + { + "path": "Modules/Transformation/src/SmoothnessConstraint.cc", + "sha256": "00643c3cdfa8fba966ca290443f9c916c54961b626d7d121af79c8a9fb2365c1", + "language": "C++", + "lines": 176, + "truncated": false, + "block": 9, + "row": 611 + }, + { + "path": "Modules/Transformation/src/SparsityConstraint.cc", + "sha256": "6a83c3574e4761d704d956e56174e94bf88b3204107552d56a07b167955948df", + "language": "C++", + "lines": 118, + "truncated": false, + "block": 9, + "row": 427 + }, + { + "path": "Modules/Transformation/src/TopologyPreservationConstraint.cc", + "sha256": "cbbdac382c20b6d3bd26fa71cdbff0163d85e6ef83c41e101a310f72b8be2699", + "language": "C++", + "lines": 50, + "truncated": false, + "block": 9, + "row": 243 + }, + { + "path": "Modules/Transformation/src/Transformation.cc", + "sha256": "457bcddfdaf976647e869f0648bfdf64837a0415489ccff65a9cb63197bc4509", + "language": "C++", + "lines": 2042, + "truncated": false, + "block": 9, + "row": 1084 + }, + { + "path": "Modules/Transformation/src/TransformationApproximationError.cc", + "sha256": "b977a89fbf4e8a46c0c784b7b61d4225b686681952dca905595a86d5cce02893", + "language": "C++", + "lines": 266, + "truncated": false, + "block": 9, + "row": 690 + }, + { + "path": "Modules/Transformation/src/TransformationConfig.cc", + "sha256": "db0efd67a1fd956bb12e598c629c75ed570934d01cab62232fb1fa350998650d", + "language": "C++", + "lines": 62, + "truncated": false, + "block": 9, + "row": 286 + }, + { + "path": "Modules/Transformation/src/TransformationConstraint.cc", + "sha256": "93a82af7897e1ed81c66e932f68739cca2af4b397bbc7218219142a1dce1445e", + "language": "C++", + "lines": 132, + "truncated": false, + "block": 9, + "row": 531 + }, + { + "path": "Modules/Transformation/src/TransformationInverse.cc", + "sha256": "0339bea5213e5b44563a25a5b29f7198d19825148c9a3fd2163105ce8a06f212", + "language": "C++", + "lines": 355, + "truncated": false, + "block": 9, + "row": 784 + }, + { + "path": "Modules/Transformation/src/TransformationUtils.h", + "sha256": "b81a8435bd254963cdfff7f92f4df230cb86a3dc07ff7ec5854db9832bd7e69a", + "language": "C/C++", + "lines": 135, + "truncated": false, + "block": 9, + "row": 1503 + }, + { + "path": "Modules/Transformation/src/VolumePreservationConstraint.cc", + "sha256": "f493858a24bd41d97b702cb37a2e488d935182a88c26ccd79981557af937cdf4", + "language": "C++", + "lines": 49, + "truncated": false, + "block": 9, + "row": 240 + }, + { + "path": "README.md", + "sha256": "e435b1bca03f0dac080f02ef2672979705daf431c1cd111f22b64f9adf673a6c", + "language": "Text", + "lines": 38, + "truncated": false, + "block": 9, + "row": 14506 + }, + { + "path": "Scripts/install_depends.sh", + "sha256": "6a748e6945304a48aa1c746e73862e2292c8c323317ca4364f5045f55d48005f", + "language": "Shell", + "lines": 349, + "truncated": false, + "block": 9, + "row": 14399 + }, + { + "path": "Scripts/install_mirtk_appimage.sh", + "sha256": "30a3bd5dcc93e6482a7281f156690b4da6710f084b54815a183ebbe4cd0ac219", + "language": "Shell", + "lines": 48, + "truncated": false, + "block": 9, + "row": 14249 + }, + { + "path": "Scripts/make_appimage.sh", + "sha256": "09c5010bd0ce8dae0ce051c76d4a40f7055035a61bdb7ea0c30014bbceb2d687", + "language": "Shell", + "lines": 243, + "truncated": false, + "block": 9, + "row": 14370 + }, + { + "path": "Scripts/mirtk_bash_completion.sh", + "sha256": "69880f3a7528a9a9b547429cf49665d6563b6d8fa4e634bbe2288cf750624d0b", + "language": "Shell", + "lines": 36, + "truncated": false, + "block": 9, + "row": 14287 + }, + { + "path": "Scripts/replace.sh", + "sha256": "e2546d4ee174cec1cb2605be7d4cc50bbe479ea3100d39714c2607c2d30b6724", + "language": "Shell", + "lines": 31, + "truncated": false, + "block": 9, + "row": 14075 + }, + { + "path": "Scripts/travis.sh", + "sha256": "e09370b054e2c22992c12561efb04b9f19636e2f65181de28af403ac7ef61c6c", + "language": "Shell", + "lines": 107, + "truncated": false, + "block": 9, + "row": 14288 + }, + { + "path": "Templates/mirtk-module/1.0/_config.py", + "sha256": "38cb9f0f411048142320370e66ab178ca830b8c976c399d553260063c2786b83", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 9, + "row": 8566 + }, + { + "path": "Templates/mirtk-module/1.0/test/testClassName.cc", + "sha256": "03ae794dbb5c8a715a64f4732dd548a47219fe22277d36d2be37716d484409bc", + "language": "C++", + "lines": 39, + "truncated": false, + "block": 9, + "row": 201 + } + ] +} \ No newline at end of file diff --git a/manifests/a4/github.com__misun6312__pbupsmodel.jl.json b/manifests/a4/github.com__misun6312__pbupsmodel.jl.json new file mode 100644 index 0000000000000000000000000000000000000000..7ea2c37f6aa908b1a583a38de946b174bc68e678 --- /dev/null +++ b/manifests/a4/github.com__misun6312__pbupsmodel.jl.json @@ -0,0 +1,102 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/misun6312/pbupsmodel.jl", + "url": "https://github.com/misun6312/PBupsModel.jl", + "host": "github.com", + "commit": "70fff040d4134591f6729e5864bb6a92d260117e", + "license": "MIT", + "license_confirmed_by": "license file LICENSE.md", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.md", + "sha256": "c5f0a428df172ce7d0772a17fffaa169506493c2ffe6bee8d8853e1f3841316a", + "language": "License", + "lines": 22, + "truncated": false, + "block": 9, + "row": 2865 + }, + { + "path": "README.md", + "sha256": "dcf59748c225e5ba64303aa6022422425db299dc97a112635015a83340f50a67", + "language": "Text", + "lines": 154, + "truncated": false, + "block": 9, + "row": 14681 + }, + { + "path": "src/PBupsModel.jl", + "sha256": "e5972e18ef1730c930c4106ceda31fa39f56191111962f3515fab6f31b4c64c1", + "language": "Julia", + "lines": 48, + "truncated": false, + "block": 9, + "row": 2136 + }, + { + "path": "src/all_trials.jl", + "sha256": "18745f42dbe2a5d4a740e6527b40a68d533030b2ffd01d5d941541d1a9694eaa", + "language": "Julia", + "lines": 124, + "truncated": false, + "block": 9, + "row": 2148 + }, + { + "path": "src/bbox_hessian_keyword_minimization.jl", + "sha256": "42ea78ade365f50a5e07cdaa6e586491ac73f0c2e114a1b84d626535a125d5eb", + "language": "Julia", + "lines": 429, + "truncated": false, + "block": 9, + "row": 2169 + }, + { + "path": "src/constrained_parabolic_minimization.jl", + "sha256": "618199bbabac26122a7bf262a3f7d4fbf3dc2f15071efcee2e63049e8c7de6cc", + "language": "Julia", + "lines": 229, + "truncated": false, + "block": 9, + "row": 2164 + }, + { + "path": "src/data_handle.jl", + "sha256": "a7a864b071818f28cad159282167a292a4102bada72ad1b6c7ac8c9581749a0d", + "language": "Julia", + "lines": 45, + "truncated": false, + "block": 9, + "row": 2137 + }, + { + "path": "src/model_likelihood.jl", + "sha256": "5a9b583d0a6044154120ea72e1991ee885478c4c8781b30b9fcf86824af970fd", + "language": "Julia", + "lines": 409, + "truncated": false, + "block": 9, + "row": 2168 + }, + { + "path": "src/model_optimization.jl", + "sha256": "5f71789ede44f605d59f338cfb7f788aeadb4b41ad1a1bb101d6c7d50725fcf7", + "language": "Julia", + "lines": 228, + "truncated": false, + "block": 9, + "row": 2163 + }, + { + "path": "test/runtests.jl", + "sha256": "307ea53555b087933fe3840574cece192000c735d65b663bd5d443a5215e43b0", + "language": "Julia", + "lines": 150, + "truncated": false, + "block": 9, + "row": 2151 + } + ] +} \ No newline at end of file diff --git a/manifests/a5/zenodo__18257503.json b/manifests/a5/zenodo__18257503.json new file mode 100644 index 0000000000000000000000000000000000000000..f02a21877f5ecee0303b2bd55b585e3eb3cc310d --- /dev/null +++ b/manifests/a5/zenodo__18257503.json @@ -0,0 +1,471 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18257503", + "url": "10.5281/zenodo.18257503", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "01_CUTandTAG_processing/SEACR_1.3.R", + "sha256": "106c28d691bc548731814d5d52da2a052474f3c1f5b270504e9f58f70e9110cc", + "language": "R", + "lines": 153, + "truncated": false, + "block": 9, + "row": 13451 + }, + { + "path": "01_CUTandTAG_processing/SEACR_1.3.sh", + "sha256": "f1f3897732d8664904017615d145a6605ac6a89ac6ea872a0f83038c4e517ad8", + "language": "Shell", + "lines": 199, + "truncated": false, + "block": 9, + "row": 14379 + }, + { + "path": "01_CUTandTAG_processing/annotate_peaks.R", + "sha256": "defbc91f69d9f96495b88890926fdc8c598971bf6e3f6a532ae043f693d51f87", + "language": "R", + "lines": 40, + "truncated": false, + "block": 9, + "row": 12853 + }, + { + "path": "01_CUTandTAG_processing/calculate_frip.R", + "sha256": "8a001851465bee0814eb0993400b5f16b577377e0fb22b9227fbc918e9571ed9", + "language": "R", + "lines": 21, + "truncated": false, + "block": 9, + "row": 12780 + }, + { + "path": "01_CUTandTAG_processing/calculate_tss_enrichment.R", + "sha256": "02fe19d50b6bdd10a6c5e1d03f7f100db12faa5c41156663459422a9f11c568f", + "language": "R", + "lines": 37, + "truncated": false, + "block": 9, + "row": 12832 + }, + { + "path": "01_CUTandTAG_processing/combine_peaks_broad.py", + "sha256": "8e8176378451b36af02234d0469ae7db5b22236ac9d3716be5b26a71bf85b88c", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 9, + "row": 10031 + }, + { + "path": "01_CUTandTAG_processing/combine_peaks_narrow.py", + "sha256": "33f398dcc5b6c1eb7125aea9f538ed9d1ebc037c0f572915e607f2090864d141", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 9, + "row": 9386 + }, + { + "path": "01_CUTandTAG_processing/diffbind_analysis.R", + "sha256": "b8740229589e0fdf7d68041ad365caee8f4e1818f3c182e03e91e59a8c49fd16", + "language": "R", + "lines": 47, + "truncated": false, + "block": 9, + "row": 12868 + }, + { + "path": "01_CUTandTAG_processing/filter_peaks.R", + "sha256": "258bee69c963d96b2cc852f142f9e91272ae845dc7050169ceebe6d4c1530010", + "language": "R", + "lines": 22, + "truncated": false, + "block": 9, + "row": 12793 + }, + { + "path": "02_CpG_enrichment/cpg_enrichment_analysis.py", + "sha256": "a27832ae5a5b898c952ae641b2d441195d9872b6515392745a0fa62dcdadd571", + "language": "Python", + "lines": 364, + "truncated": false, + "block": 9, + "row": 11375 + }, + { + "path": "02_CpG_enrichment/cpg_enrichment_in_islands.py", + "sha256": "cc3246ca69f0d8585879492023f514058b04208f1d2ee748d748032cdb11c796", + "language": "Python", + "lines": 363, + "truncated": false, + "block": 9, + "row": 11459 + }, + { + "path": "02_CpG_enrichment/cpg_gene_analysis.R", + "sha256": "b213f28254b397f1d67cdd5ab3cc65e0b16b0892e19dbcb0658290ba1fef63cd", + "language": "R", + "lines": 246, + "truncated": false, + "block": 9, + "row": 13514 + }, + { + "path": "02_CpG_enrichment/integrate_rnaseq.R", + "sha256": "ed42bd52a03a339ecf3deea45761215f0df99ed0fcf511246cf198c02860a1f0", + "language": "R", + "lines": 113, + "truncated": false, + "block": 9, + "row": 13145 + }, + { + "path": "02_CpG_enrichment/peak_localization.R", + "sha256": "8c83bdf169a4c57314a51f1f1a76b0cf3b78ba681be2cd8a349409fb3a4432b7", + "language": "R", + "lines": 308, + "truncated": false, + "block": 9, + "row": 13605 + }, + { + "path": "03_RNAseq_analysis/01_fastqc.sh", + "sha256": "c3a002b4f9f837b2d4e4add38dba0662c6ba29d69830a1d868f455669fff955d", + "language": "Shell", + "lines": 57, + "truncated": false, + "block": 9, + "row": 14204 + }, + { + "path": "03_RNAseq_analysis/02_star_alignment.sh", + "sha256": "6f215c75c0400abe00b2f7631eea598484553f900c87c60a7accce4f847621b8", + "language": "Shell", + "lines": 99, + "truncated": false, + "block": 9, + "row": 14281 + }, + { + "path": "03_RNAseq_analysis/03_featurecounts.sh", + "sha256": "ed2abd7d652b8eccc88a89ab12561becb5e05d1fc62a60e71c76e4f0e37065b3", + "language": "Shell", + "lines": 77, + "truncated": false, + "block": 9, + "row": 14266 + }, + { + "path": "03_RNAseq_analysis/04_deseq2_analysis.R", + "sha256": "05df3bcfe42606a8d2f43f5def80271ec20a572edc4b6b9e820c2154abcd9295", + "language": "R", + "lines": 215, + "truncated": false, + "block": 9, + "row": 13493 + }, + { + "path": "03_RNAseq_analysis/05_functional_enrichment.R", + "sha256": "8ce1d0064b45fd204357da6bd43d273b65ef749e7ffdbb1463a979cad5a663d4", + "language": "R", + "lines": 256, + "truncated": false, + "block": 9, + "row": 13550 + }, + { + "path": "03_RNAseq_analysis/06_visualizations.R", + "sha256": "f57697a60a6e34f3aed7799f27e56f0b6ed5a55028c839a70d7ff014832a9510", + "language": "R", + "lines": 632, + "truncated": false, + "block": 9, + "row": 13772 + }, + { + "path": "03_RNAseq_analysis/generate_de_table.R", + "sha256": "c9d3eb27240269d7ffca481a209a7a16ba0a23fe78deeeb37baeb7f998b99efc", + "language": "R", + "lines": 249, + "truncated": false, + "block": 9, + "row": 13569 + }, + { + "path": "03_RNAseq_analysis/generate_volcano_plots.R", + "sha256": "7ea7970addf571150f0c2d9b48a4d8ee0d3730586b7eee189436e60eb43a131c", + "language": "R", + "lines": 310, + "truncated": false, + "block": 9, + "row": 13651 + }, + { + "path": "04_binding_expression_integration/binding_heatmap.py", + "sha256": "56e9edf0e77d8b045cdad0e43ed270ee5cb924333db8b70b040ed1b11a16924a", + "language": "Python", + "lines": 644, + "truncated": false, + "block": 9, + "row": 12097 + }, + { + "path": "04_binding_expression_integration/gene_body_analysis.py", + "sha256": "4eb1d69fe9dffd5c0d69cdeb25bc47530a05cbec4735f25686e08c004a1c6a6a", + "language": "Python", + "lines": 798, + "truncated": false, + "block": 9, + "row": 12348 + }, + { + "path": "04_binding_expression_integration/integrate_genebody_rnaseq.py", + "sha256": "2ea8f29af9878d57f759e0023609433c87ff5ee387b7cd66b0b94c792ddde0bb", + "language": "Python", + "lines": 585, + "truncated": false, + "block": 9, + "row": 12155 + }, + { + "path": "04_binding_expression_integration/integrate_rnaseq_base.py", + "sha256": "9fd3cfeb0cb09a14a0ec1ddaa14b48332ae2c299bc422444ad513ca00339a63c", + "language": "Python", + "lines": 325, + "truncated": false, + "block": 9, + "row": 11276 + }, + { + "path": "04_binding_expression_integration/peak_expression_correlation.py", + "sha256": "48fc636cfb283a6bca0a0fb97f1cc2ae832bf56df4a34e7083e13a3736b354f1", + "language": "Python", + "lines": 765, + "truncated": false, + "block": 9, + "row": 12217 + }, + { + "path": "04_binding_expression_integration/promoter_expression_correlation.py", + "sha256": "6123f84f04e8224deb321504c606f8b036d2a1e2178d676e2de0966fa7491c2f", + "language": "Python", + "lines": 641, + "truncated": false, + "block": 9, + "row": 12039 + }, + { + "path": "05_Smarcb1_analysis/01_cpg_metaprofile.py", + "sha256": "3abae27494dd7c76ae18efbb8954693a2b4ac9e17e037831a92ddb7f7dc6d40d", + "language": "Python", + "lines": 511, + "truncated": false, + "block": 9, + "row": 12054 + }, + { + "path": "05_Smarcb1_analysis/02_cpg_targets.py", + "sha256": "c53527ee53dd0f40b25eb6a4b294bce8e5154563a99b6bc3898282eb84113523", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 9461 + }, + { + "path": "05_Smarcb1_analysis/03_smarcb1_comparison.py", + "sha256": "538f2b959771cafa97e22e288efd2e613d5129691ba7b6087e0c9f9b54d88e87", + "language": "Python", + "lines": 151, + "truncated": false, + "block": 9, + "row": 9765 + }, + { + "path": "05_Smarcb1_analysis/04_smarcb1_comparison_extended.py", + "sha256": "b1b3aa0ca6ed2aca0ecea591e8c2aec2bab02d44c2a3f00de1ca7ce9bbd0cfc3", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 9, + "row": 10055 + }, + { + "path": "05_Smarcb1_analysis/05_smarcb1_dea_analysis.py", + "sha256": "f498642c9c9726ca1561b9a9cbbe05210169ac43d0d3e9a0dd76109b90abd5cb", + "language": "Python", + "lines": 166, + "truncated": false, + "block": 9, + "row": 9861 + }, + { + "path": "06_SAMMY_seq/00_build_index.sh", + "sha256": "0db11805d669b610b02b8ac2bdea133120992dae254069d88857a6dc49ae4391", + "language": "Shell", + "lines": 39, + "truncated": false, + "block": 9, + "row": 14147 + }, + { + "path": "06_SAMMY_seq/01_process_fastq.sh", + "sha256": "d3e3e6427b169d0ec9a5189106b663dad8cde31be4d041da52c508912b4d680f", + "language": "Shell", + "lines": 275, + "truncated": false, + "block": 9, + "row": 14388 + }, + { + "path": "06_SAMMY_seq/02_run_sammy_analysis.sh", + "sha256": "7d52a518ab306bf4ba2716c9199aca6f04c8355ad2148f631bbbe473abdf04e0", + "language": "Shell", + "lines": 33, + "truncated": false, + "block": 9, + "row": 14146 + }, + { + "path": "06_SAMMY_seq/02_sammy_analysis.py", + "sha256": "1c8075034a8fe2791f22d762b8858b8d3a0cc37c4e87b933687aab5ca944de64", + "language": "Python", + "lines": 674, + "truncated": false, + "block": 9, + "row": 12168 + }, + { + "path": "06_SAMMY_seq/02b_run_sammy_blacklisted.sh", + "sha256": "ee21eb58cfdce43ba778e190ceb74468c9c503d410dab030621541904ff8194f", + "language": "Shell", + "lines": 35, + "truncated": false, + "block": 9, + "row": 14150 + }, + { + "path": "06_SAMMY_seq/02b_sammy_analysis_blacklisted.py", + "sha256": "4083be4bedd4e274b43fb8a0e50770c32aa3a8a587af8ed3b4b3a4a89114e1c0", + "language": "Python", + "lines": 712, + "truncated": false, + "block": 9, + "row": 12204 + }, + { + "path": "06_SAMMY_seq/03_chromatin_state_analysis.py", + "sha256": "e4c0e0f3876adca3f94ab3340ec5b28227a8e262df6cb2a284439e76badc0a6a", + "language": "Python", + "lines": 761, + "truncated": false, + "block": 9, + "row": 12307 + }, + { + "path": "06_SAMMY_seq/03_run_chromatin_analysis.sh", + "sha256": "87e6164d6cf76fb02143b0b26be011cad87af56f546cddf7d95495b4effab9ad", + "language": "Shell", + "lines": 39, + "truncated": false, + "block": 9, + "row": 14182 + }, + { + "path": "06_SAMMY_seq/04_chromatin_comparison.py", + "sha256": "081b51177080f02cfb3ab03b50685c064d9ee4913509dba4215e5d8cc74994df", + "language": "Python", + "lines": 713, + "truncated": false, + "block": 9, + "row": 12239 + }, + { + "path": "06_SAMMY_seq/04_run_comparison_neu.sh", + "sha256": "f9a7764c8017772e8d944e1679cbd31b3bb89b8096f734f1b6adc3bcc268a1bf", + "language": "Shell", + "lines": 39, + "truncated": false, + "block": 9, + "row": 14186 + }, + { + "path": "06_SAMMY_seq/04_run_comparison_nsc.sh", + "sha256": "9eeaef01903e5d0ec2d23985672fa1f4834118a03762374bbc3f0136a861d693", + "language": "Shell", + "lines": 39, + "truncated": false, + "block": 9, + "row": 14185 + }, + { + "path": "06_SAMMY_seq/05_metaprofile_heatmap.py", + "sha256": "8863c68130b375d71c9ac539dfe9dd001c93702a39a9668790c5c9892c07da91", + "language": "Python", + "lines": 391, + "truncated": false, + "block": 9, + "row": 11462 + }, + { + "path": "06_SAMMY_seq/05_run_metaprofile_heatmap.sh", + "sha256": "cfd6ced4a0af636042562dfd7626912e7781fbc50519479d641d5f98f3f84094", + "language": "Shell", + "lines": 49, + "truncated": false, + "block": 9, + "row": 14220 + }, + { + "path": "06_SAMMY_seq/06_associate_regions_genes.py", + "sha256": "efba90e9661b9d03747211b1e811bed4618a651106d43ddb3489865de89badbc", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 9, + "row": 10959 + }, + { + "path": "06_SAMMY_seq/07_target_comparison_heatmap.py", + "sha256": "0458bc358ebfa10e0570c49ce9ece1529c9172965018b443747b78776131945c", + "language": "Python", + "lines": 735, + "truncated": false, + "block": 9, + "row": 12308 + }, + { + "path": "06_SAMMY_seq/sammy_analysis_extended.py", + "sha256": "b4959c130bf3cc9f88d1a6c458d9384bbfdd42d3eaa01b3e7add0512c8920918", + "language": "Python", + "lines": 880, + "truncated": false, + "block": 9, + "row": 12346 + }, + { + "path": "07_visualization/01_metaprofiles.sh", + "sha256": "9e256ddb3a9c1f5c8c5c10bd293a9c83581a373c3516a24ba74945b51320d92b", + "language": "Shell", + "lines": 124, + "truncated": false, + "block": 9, + "row": 14318 + }, + { + "path": "README.md", + "sha256": "7a49fca977fc55cfd7ef051137bfd75483cbb1e4bf86f022902d97ee214b6a6e", + "language": "Text", + "lines": 1, + "truncated": false, + "block": 9, + "row": 14448 + } + ] +} \ No newline at end of file diff --git a/manifests/a7/github.com__ohba-analysis__huang2025_modelvariabilitywithembeddings.json b/manifests/a7/github.com__ohba-analysis__huang2025_modelvariabilitywithembeddings.json new file mode 100644 index 0000000000000000000000000000000000000000..09322aeeda8b63fc7acdee45bf2f57b743244cb0 --- /dev/null +++ b/manifests/a7/github.com__ohba-analysis__huang2025_modelvariabilitywithembeddings.json @@ -0,0 +1,273 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ohba-analysis/huang2025_modelvariabilitywithembeddings", + "url": "https://github.com/OHBA-analysis/Huang2025_ModelVariabilityWithEmbeddings", + "host": "github.com", + "commit": "7456b9af6601e253f6728823e2c99b14e2d3e9ec", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "352cac74972f24cefd6fab908dba1fcabab25c9fe814fcbec3dc98355b6c75ea", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2834 + }, + { + "path": "README.md", + "sha256": "7e9bb5deff70df0c5c5cd2e5502f8846016947627f899dab4ea5313086965cfb", + "language": "Text", + "lines": 20, + "truncated": false, + "block": 9, + "row": 14518 + }, + { + "path": "data_preprocessing/camcan/1_preprocess.py", + "sha256": "9e875f3130dbad7074c7255ebebdb6bc4fbbed581c845c7b588a20afad150592", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7692 + }, + { + "path": "data_preprocessing/camcan/2_coregister.py", + "sha256": "ad4d4c908b07f1c9cf113a79e1120a12b9ad4fdda1c03e0c0047ee0d790eaaf8", + "language": "Python", + "lines": 654, + "truncated": false, + "block": 9, + "row": 11565 + }, + { + "path": "data_preprocessing/camcan/3_source_reconstruct.py", + "sha256": "8b75f0684502e74a2f264a6dd5cad8ae623bd6fe5069682f3cdba1d9f1d1faec", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 7961 + }, + { + "path": "data_preprocessing/camcan/4_sign_flip.py", + "sha256": "e3160ac75423d80c6cc5dab9677d22296a5473463ca8f75d3ffd7714c806bc1e", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7293 + }, + { + "path": "data_preprocessing/notts/1_preprocess.py", + "sha256": "d053569031335d31d79a134e1c61c09cce7473aeecf315a8c870dcae6d5e0257", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 9, + "row": 7613 + }, + { + "path": "data_preprocessing/notts/2_fix_smri_files.py", + "sha256": "23b79908e76b89fc656aacb76e4752c40e3cb96df76a273863bba7641a5c6a1d", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 7760 + }, + { + "path": "data_preprocessing/notts/3_source_reconstruct.py", + "sha256": "e11347635be0dade93f73ecc725d79192483e96bd6154988eafe4cf8d7daf46d", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9037 + }, + { + "path": "data_preprocessing/notts/4_sign_flip.py", + "sha256": "b5996838d0e2f0877e2e4b8d7143d85fcb8611121534f4a7424c9418e5393f7d", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7307 + }, + { + "path": "data_preprocessing/wakeman_henson/1_preprocess.py", + "sha256": "b69e9038e425d5974ef6d3a2f0943579605a60c54c129255acb684ba91a96d49", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7500 + }, + { + "path": "data_preprocessing/wakeman_henson/2_source_reconstruct.py", + "sha256": "9409625a9ef303400aef8c4c9caae11a18c36cf2fbe9d68a2f42cb17df11b8cd", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8327 + }, + { + "path": "data_preprocessing/wakeman_henson/3_sign_flip.py", + "sha256": "db97ce09e0e31eaa912c6e9cd60b421838e3567c2918f11a8d6b869a3bfe62ff", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7295 + }, + { + "path": "real_data/camcan/analyse_and_plot.py", + "sha256": "159f410d655806db57633e7daec95f6b63043c3fb895d0fe50bb52e8943fbe5c", + "language": "Python", + "lines": 371, + "truncated": false, + "block": 9, + "row": 10912 + }, + { + "path": "real_data/camcan/hive.py", + "sha256": "8470da1b79a45b6029c353311e025a23a5d54b1a8529e0ca122fa1cb790a6a45", + "language": "Python", + "lines": 258, + "truncated": false, + "block": 9, + "row": 10216 + }, + { + "path": "real_data/camcan/hmm.py", + "sha256": "c476d77f4c846114b960d6a6c03e442c388292f2d09fe6188d8d059e02ab6c38", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 7415 + }, + { + "path": "real_data/camcan/predict_age.py", + "sha256": "6ec8ea5eefffba47d9c40890328cd482353ca1669d296fd146f5357966feb3ef", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 9251 + }, + { + "path": "real_data/camcan/submit.py", + "sha256": "c1f943b66732b0e2cfa8345883eabfc2810c45f5687d68404cb0f4bbcc969857", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7267 + }, + { + "path": "real_data/multi_dataset/analyse_and_plot.py", + "sha256": "969eb3f21cc0c6767af7a6bac2eea53893d412777d3f0a74ce4849767f68c490", + "language": "Python", + "lines": 551, + "truncated": false, + "block": 9, + "row": 11614 + }, + { + "path": "real_data/multi_dataset/hive.py", + "sha256": "84388832a6083a76457f85ffd10cdc96c86cb3374842f68e3b04880d0731a2ec", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 9, + "row": 9641 + }, + { + "path": "real_data/multi_dataset/hmm.py", + "sha256": "2a864bbdc95e0e50b7d9d3e9f4bb84d2cb2cd482a45b4391e5831dc7ca9b87b3", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 9, + "row": 9604 + }, + { + "path": "real_data/multi_dataset/submit.py", + "sha256": "9c77dccc8d869168f76cc03062b4f10add24ff366f924f43314807e94669b3cf", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7259 + }, + { + "path": "real_data/wakeman_henson/analyse_and_plot.py", + "sha256": "2d86b165381bb284c23d2e838db3bb4bb0608a8341b6be7651051e95c2f468c2", + "language": "Python", + "lines": 347, + "truncated": false, + "block": 9, + "row": 10807 + }, + { + "path": "real_data/wakeman_henson/hive.py", + "sha256": "67f3df5f260fea5c83b44f2a96a6e09d1e7229544667e2844a5f7ac31b895308", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 7515 + }, + { + "path": "real_data/wakeman_henson/hmm.py", + "sha256": "5edacd7be48657b25a44d258ff3a145713abdd4cc4a94ee959aabae6e25020b9", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 7453 + }, + { + "path": "real_data/wakeman_henson/submit.py", + "sha256": "9c77dccc8d869168f76cc03062b4f10add24ff366f924f43314807e94669b3cf", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7259 + }, + { + "path": "simulations/simulation_1.py", + "sha256": "2ee3634143ebf6a8dd8041773d4b628ea21aa82a7aa02e53073ca24f73d570d2", + "language": "Python", + "lines": 329, + "truncated": false, + "block": 9, + "row": 10856 + }, + { + "path": "simulations/simulation_2.py", + "sha256": "2e15e3745f1208a4cbb1f314b5de54db263e75049966794727dd0732db683292", + "language": "Python", + "lines": 313, + "truncated": false, + "block": 9, + "row": 10765 + }, + { + "path": "simulations/simulation_3.py", + "sha256": "71515968ca50ce771334a4cdc6fd25484d6a2e5fa0e722f26b7ac58b4797f025", + "language": "Python", + "lines": 450, + "truncated": false, + "block": 9, + "row": 11297 + } + ] +} \ No newline at end of file diff --git a/manifests/a7/github.com__osmar235__tdcs_left_sensorimotor_cortex_bimanual_force_control.json b/manifests/a7/github.com__osmar235__tdcs_left_sensorimotor_cortex_bimanual_force_control.json new file mode 100644 index 0000000000000000000000000000000000000000..a819438431e433fb6265caf5d9307f0020e0c078 --- /dev/null +++ b/manifests/a7/github.com__osmar235__tdcs_left_sensorimotor_cortex_bimanual_force_control.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/osmar235/tdcs_left_sensorimotor_cortex_bimanual_force_control", + "url": "https://github.com/osmar235/tDCS_Left_Sensorimotor_Cortex_Bimanual_Force_Control/tree/v.01", + "host": "github.com", + "commit": "5053987cc6098c994c615ca0555a0dd364601fdc", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "eeb3380ab7a24f3381031814ac9f8409a4a9de27da576064f9a686963fb7e33a", + "language": "License", + "lines": 22, + "truncated": false, + "block": 9, + "row": 2867 + }, + { + "path": "README.md", + "sha256": "af973e1666450e10d31bba1c1cbc788143262058e5e2bd7296ec70b0d152319a", + "language": "Text", + "lines": 158, + "truncated": false, + "block": 9, + "row": 14630 + }, + { + "path": "tDCS_motorcontrol_03012026.py", + "sha256": "51edf36ee10648e4d3b809d8bdb987c54260f1ec923622f0bfb99611328a42bf", + "language": "Python", + "lines": 1011, + "truncated": false, + "block": 9, + "row": 12429 + } + ] +} \ No newline at end of file diff --git a/manifests/a7/zenodo__19335929.json b/manifests/a7/zenodo__19335929.json new file mode 100644 index 0000000000000000000000000000000000000000..9d013af069c989f53b2afa111c0ad51bc0215e7f --- /dev/null +++ b/manifests/a7/zenodo__19335929.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19335929", + "url": "https://doi.org/10.5281/zenodo.19335929", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Classification_Comparison_Code.py", + "sha256": "749617f9f02e2b9798b7bbcf605c032f8e4cbe9b9aa588472cfb5ab8b15608e1", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 9, + "row": 10567 + }, + { + "path": "Regression_Comparison_Code.py", + "sha256": "33fb3ade050317d40a8077abb79d2a1b730e509bd39603e1660a1a70f0b4b7af", + "language": "Python", + "lines": 199, + "truncated": false, + "block": 9, + "row": 10622 + } + ] +} \ No newline at end of file diff --git a/manifests/a8/github.com__ryan-gorzek__opossum-v1-omics.json b/manifests/a8/github.com__ryan-gorzek__opossum-v1-omics.json new file mode 100644 index 0000000000000000000000000000000000000000..7515689462f23e420bb320745f34fd0acceac3e9 --- /dev/null +++ b/manifests/a8/github.com__ryan-gorzek__opossum-v1-omics.json @@ -0,0 +1,363 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ryan-gorzek/opossum-v1-omics", + "url": "https://github.com/ryan-gorzek/opossum-V1-omics", + "host": "github.com", + "commit": "8c490f6ef5d283fb52fcd1caf94be2381b94b983", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "c2771463575fc951164c9aed9f2f71d821c611d984bdf12c257cb455dd0526c6", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2789 + }, + { + "path": "README.md", + "sha256": "b4b2b0276139308bb3fa49e5b89b8c24b58516ca25998b3c844d210b00bc18f8", + "language": "Text", + "lines": 61, + "truncated": false, + "block": 9, + "row": 14537 + }, + { + "path": "config.R", + "sha256": "3af2be3cb547309129f376bf143e42a913e58cd1e48b72d28c6fe04eecbc09ae", + "language": "R", + "lines": 98, + "truncated": false, + "block": 9, + "row": 13053 + }, + { + "path": "figure 1/1CD_OpossumMouse_AllCellUMAP.Rmd", + "sha256": "12681c26a3f204f2eb9d6930af517b372471270b7d2487d8efb3ad82a7d7162d", + "language": "R", + "lines": 91, + "truncated": false, + "block": 9, + "row": 13119 + }, + { + "path": "figure 1/1E_OpossumMouse_AllSubclassDotPlot.Rmd", + "sha256": "8ea1f0e2b4d33427e77442241378ef3346bf695dc8223d7a7a2d1f605b16f710", + "language": "R", + "lines": 69, + "truncated": false, + "block": 9, + "row": 13032 + }, + { + "path": "figure 1/1F_OpossumMouse_IntegratedSubclassOverlapHeatmap.Rmd", + "sha256": "e74b21208e3df79584d61413555186469e5e2c0cc820a775495901a45a0adc23", + "language": "R", + "lines": 140, + "truncated": false, + "block": 9, + "row": 13338 + }, + { + "path": "figure 1/1GHIJK_OpossumMouse_ClassSubclassProportions.Rmd", + "sha256": "90d6f4759ca0cd5b31c077718a4fba49a4cd053fb72508617efb0bd2599f3800", + "language": "R", + "lines": 244, + "truncated": false, + "block": 9, + "row": 13620 + }, + { + "path": "figure 2/2B_OpossumMouse_ITDiffusion.Rmd", + "sha256": "a03b0d9e3abed13be70ccc4353b714430817d36a4577508e0bf454940c79324b", + "language": "R", + "lines": 196, + "truncated": false, + "block": 9, + "row": 13320 + }, + { + "path": "figure 2/2DEF_OpossumMouse_CrossSpeciesMapping.Rmd", + "sha256": "0958886587b383d7416f06cda446160d22fc5d79240abfcdbca3b90775a788a9", + "language": "R", + "lines": 150, + "truncated": false, + "block": 9, + "row": 13365 + }, + { + "path": "figure 2/2GHIJKOP_OpossumMouse_ITArchetypes.Rmd", + "sha256": "d26e84fcbaf595f1b11efd31f3ad9ca4bda4b178ad967c507aab20b4464caf75", + "language": "R", + "lines": 211, + "truncated": false, + "block": 9, + "row": 13525 + }, + { + "path": "figure 2/2LMN_OpossumMouse_WGCNAModules.Rmd", + "sha256": "e4ac4db3c3a2e75cabeab9d4adc2f35401fbcfd5d3de0dfe92d51ded005603cb", + "language": "R", + "lines": 496, + "truncated": false, + "block": 9, + "row": 13692 + }, + { + "path": "figure 2/2Q_OpossumMouse_ITHVGCorrelations.Rmd", + "sha256": "451dbf63735c36af95ec5ee5aae9c35aa7618d82d614c000ae8b552580b0ce0b", + "language": "R", + "lines": 236, + "truncated": false, + "block": 9, + "row": 13485 + }, + { + "path": "figure 2/TwoGHIJKOP_OpossumMouse_ITArchetypes.m", + "sha256": "ae82881bb0d87cc16554f91cb531f2b67b9a2f3cb42d31f8b5107bd24f7b7bf3", + "language": "MATLAB", + "lines": 377, + "truncated": false, + "block": 9, + "row": 5657 + }, + { + "path": "figure 3/3A_Mouse_LabelSection.Rmd", + "sha256": "5f61dc6a15da45033135a3f23fb4c64fc22036462a4dc37049b9861c82aee4be", + "language": "R", + "lines": 262, + "truncated": false, + "block": 9, + "row": 13506 + }, + { + "path": "figure 3/3A_Opossum_LabelSection.Rmd", + "sha256": "e2093faff6d00ea50e7f2bc7d195ded3945e5b03429f2a047154f77c5c9af2b8", + "language": "R", + "lines": 260, + "truncated": false, + "block": 9, + "row": 13511 + }, + { + "path": "figure 3/3B_OpossumMouse_SpatialGeneExpression.Rmd", + "sha256": "73a4035123cae95b90d7710acbb51d1ac84b01e465abbd81cfc4ffe796fa9b61", + "language": "R", + "lines": 201, + "truncated": false, + "block": 9, + "row": 13414 + }, + { + "path": "figure 3/3CD_Mouse_GlutamatergicColumn.Rmd", + "sha256": "631bc22a00a7860428cf00989bd5d0434500fbb80f4a03183034214092f70c17", + "language": "R", + "lines": 134, + "truncated": false, + "block": 9, + "row": 13238 + }, + { + "path": "figure 3/3CD_Opossum_GlutamatergicColumn.Rmd", + "sha256": "a560be93121b4f0838064cbdfecc54b98b4d34aab5f132d17c4d9744204e4873", + "language": "R", + "lines": 134, + "truncated": false, + "block": 9, + "row": 13240 + }, + { + "path": "figure 3/3FGHIJ_OpossumMouse_PCGradients.Rmd", + "sha256": "71601a73cfa8381744bb9b9dc58d88365fd205e681a52088b37b344d663e43f0", + "language": "R", + "lines": 1108, + "truncated": false, + "block": 9, + "row": 13842 + }, + { + "path": "figure S1/S1A_OpossumMouse_AlignmentStats.Rmd", + "sha256": "b9b5f1004604ed9cca884db2ac904ffd23c4372b8817de1d4a796cc2231c2262", + "language": "R", + "lines": 187, + "truncated": false, + "block": 9, + "row": 13444 + }, + { + "path": "figure S1/S1BC_OpossumMouse_IntergenicReadsUTRLengths.Rmd", + "sha256": "b75a16cfe2f51bf874bdc9917ed34a2ccfbc3d868691485e2c549e0dd21b4396", + "language": "R", + "lines": 333, + "truncated": false, + "block": 9, + "row": 13623 + }, + { + "path": "figure S1/S1B_intergenic_distance_pipeline.sh", + "sha256": "0e0447106131c23e7e6a3b33a57c4982c1089b20479f845c9c3adf728676c67c", + "language": "Shell", + "lines": 344, + "truncated": false, + "block": 9, + "row": 14395 + }, + { + "path": "figure S1/S1EF_OpossumMouse_GenesUMIs.Rmd", + "sha256": "f2e55249ba8e05ac0c13c24ef55ed5ae1bda2c63603d0453052508d19836d9f1", + "language": "R", + "lines": 137, + "truncated": false, + "block": 9, + "row": 13232 + }, + { + "path": "preprocessing/0_Mouse_Save_in_10x_Format_for_Seurat.ipynb", + "sha256": "7cf3c4e3187b9d2c1add57f576a7fb6bd3ecb223b3de60480890e5aad12e3c13", + "language": "Jupyter", + "lines": 71, + "truncated": false, + "block": 9, + "row": 2282 + }, + { + "path": "preprocessing/0_Opossum_ExtendGenomeAnnotation.Rmd", + "sha256": "05cf5ca9e642220e259dcbc7680b677605b9b7577262201a34ecd1d24fef320f", + "language": "R", + "lines": 688, + "truncated": false, + "block": 9, + "row": 13806 + }, + { + "path": "preprocessing/1_Mouse_SplitClasses.Rmd", + "sha256": "0533718f9bfabe072dd38ae1a7a3265a7409345e68ae48fbf7f2d2792bad0244", + "language": "R", + "lines": 140, + "truncated": false, + "block": 9, + "row": 13384 + }, + { + "path": "preprocessing/1_Opossum_SplitClasses.Rmd", + "sha256": "ce8eaaba425ccae17393b2f28f05340bf03e33e9a09c54f70071546cc2be7f82", + "language": "R", + "lines": 142, + "truncated": false, + "block": 9, + "row": 13374 + }, + { + "path": "preprocessing/2a_Mouse_LabelGlutamatergic.Rmd", + "sha256": "d183d23a9ebd8f3c6e64d449eed5f65aabd1718ba80e716547fcfd44398206e5", + "language": "R", + "lines": 136, + "truncated": false, + "block": 9, + "row": 13394 + }, + { + "path": "preprocessing/2a_Opossum_LabelGlutamatergic.Rmd", + "sha256": "07051556ac259daf1ce23a0f530645e3f7a73bcb35caec6c86b04aeeecd13622", + "language": "R", + "lines": 318, + "truncated": false, + "block": 9, + "row": 13607 + }, + { + "path": "preprocessing/2b_Mouse_LabelGABAergic.Rmd", + "sha256": "e1e224318c77dab9a7e83c8ea9eb06023085c2f21fdbd51ce255439adb600524", + "language": "R", + "lines": 145, + "truncated": false, + "block": 9, + "row": 13403 + }, + { + "path": "preprocessing/2b_Opossum_LabelGABAergic.Rmd", + "sha256": "13b9c9daaf7b37ea645a235b000efb250c1ed0c3c2881d1abee67de036642e30", + "language": "R", + "lines": 294, + "truncated": false, + "block": 9, + "row": 13538 + }, + { + "path": "preprocessing/2c_Mouse_LabelNonneuronal.Rmd", + "sha256": "02171399439569ea822ab0efe2661613b03da9054a52770565a0a833a5366cad", + "language": "R", + "lines": 132, + "truncated": false, + "block": 9, + "row": 13368 + }, + { + "path": "preprocessing/2c_Opossum_LabelNonneuronal.Rmd", + "sha256": "069ecd46152366e0cd48fbf8d12815c68f59d43ed8c16876b3adaef77e4c85d3", + "language": "R", + "lines": 290, + "truncated": false, + "block": 9, + "row": 13530 + }, + { + "path": "preprocessing/3_Mouse_SelectRegions.ipynb", + "sha256": "149967cdb74d0a427c4cc8da1998323b44a6e1a9b075743575b8d1a44cc368b2", + "language": "Jupyter", + "lines": 777, + "truncated": false, + "block": 9, + "row": 2684 + }, + { + "path": "preprocessing/3_Opossum_SelectRegions.ipynb", + "sha256": "5b0163b186f55aeb3c7e2e3aed876d8f6014b2bfc51026c5f74d777944776415", + "language": "Jupyter", + "lines": 766, + "truncated": false, + "block": 9, + "row": 2683 + }, + { + "path": "preprocessing/4_Mouse_SubsetCombineColumns.Rmd", + "sha256": "0e15a7efba449ee5de35054749da7d0fa7884747dff406a1a62a99a0faa14b54", + "language": "R", + "lines": 329, + "truncated": false, + "block": 9, + "row": 13551 + }, + { + "path": "preprocessing/4_Opossum_SubsetCombineColumns.Rmd", + "sha256": "d977a286d5ea13ed6aa8e119d230d03bf06769afaa7bb81c8aa05b638c19d263", + "language": "R", + "lines": 329, + "truncated": false, + "block": 9, + "row": 13555 + }, + { + "path": "preprocessing/5_Mouse_LabelColumns.Rmd", + "sha256": "39beb7654c62df335af6f0dd84f271884c2d7fa59b725bb9d8509ebebfa593b3", + "language": "R", + "lines": 662, + "truncated": false, + "block": 9, + "row": 13781 + }, + { + "path": "preprocessing/5_Opossum_LabelColumns.Rmd", + "sha256": "e0aff57c114e0a994fa524029520a4e3906b10f2b6da9e48ff208501b5adaf0b", + "language": "R", + "lines": 681, + "truncated": false, + "block": 9, + "row": 13790 + } + ] +} \ No newline at end of file diff --git a/manifests/a9/github.com__nrel__pt-melt.json b/manifests/a9/github.com__nrel__pt-melt.json new file mode 100644 index 0000000000000000000000000000000000000000..6f86debd5a88f3fea026476faa3929f18c1ab7a3 --- /dev/null +++ b/manifests/a9/github.com__nrel__pt-melt.json @@ -0,0 +1,183 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/nrel/pt-melt", + "url": "https://github.com/NREL/pt-melt", + "host": "github.com", + "commit": "6ce7c647f53ed891074f955432356cfc6a2f19a0", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Docs/source/conf.py", + "sha256": "52137ac5c34a2164d356d1c275a5f8407dd72b9bb3ccc0fe73bf67e3d6980f45", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7676 + }, + { + "path": "LICENSE", + "sha256": "670039134631a5d67c3245b77c92561e284662e65f8622add7ededa472d36fa0", + "language": "License", + "lines": 28, + "truncated": false, + "block": 9, + "row": 2885 + }, + { + "path": "README.md", + "sha256": "886056fa6ed2308dafc904c1185acd66833c8bb13b0b2f36b60669d4d7a16e36", + "language": "Text", + "lines": 122, + "truncated": false, + "block": 9, + "row": 14562 + }, + { + "path": "examples/hyperparameter_tuning.ipynb", + "sha256": "af4b308c218c099e0fc4fa27c3e1daf87689a6481e0ba3ad756863499873242f", + "language": "Jupyter", + "lines": 396, + "truncated": false, + "block": 9, + "row": 2471 + }, + { + "path": "examples/probabilistic_transformer_forecasting.ipynb", + "sha256": "881fae5c3b430d6eb1cc47c89d8390190aabfc8deb89b90a97c86a3b58acc187", + "language": "Jupyter", + "lines": 312, + "truncated": false, + "block": 9, + "row": 2469 + }, + { + "path": "examples/regression.ipynb", + "sha256": "c1881ac5eeb0e683a985fd10427b00ab89ee845b581c97e35cb36b9d61bdd0d9", + "language": "Jupyter", + "lines": 645, + "truncated": false, + "block": 9, + "row": 2593 + }, + { + "path": "examples/vae_clustering.ipynb", + "sha256": "9595fde552015209358b707414e5dc311de64ea74154a727790a690c5107d719", + "language": "Jupyter", + "lines": 200, + "truncated": false, + "block": 9, + "row": 2372 + }, + { + "path": "ptmelt/blocks.py", + "sha256": "494e1005f128cc07a4bb64e17955080b31c997d572369b17a9ed2ac8156a558f", + "language": "Python", + "lines": 626, + "truncated": false, + "block": 9, + "row": 11966 + }, + { + "path": "ptmelt/layers.py", + "sha256": "6b05516a51c1e93ac48fa986eaa801ba6be31ccc11b6b41cd5241d070b342665", + "language": "Python", + "lines": 416, + "truncated": false, + "block": 9, + "row": 11484 + }, + { + "path": "ptmelt/losses.py", + "sha256": "90fe2f56245fff27b1bff73b974f7773bbf015565d7690327086fb08a58176a4", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9605 + }, + { + "path": "ptmelt/models.py", + "sha256": "3b86a70816d95e8efbba7b6684250816799ccc0add83c37f6c8924756fe5e20f", + "language": "Python", + "lines": 1855, + "truncated": false, + "block": 9, + "row": 12577 + }, + { + "path": "ptmelt/nn_utils.py", + "sha256": "e2296856190bfd0700a908d5cd2c22e10736e479acb0a38f1291c0c0aede16ab", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 9, + "row": 8032 + }, + { + "path": "ptmelt/stoppers.py", + "sha256": "dcf4696c5176a60417a26c53b5feed11ab2f9d0bf02a24ed38bd3e2300b92a11", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7771 + }, + { + "path": "ptmelt/utils/evaluation.py", + "sha256": "259ae18971f9eda8b384beebadc8e7b446e36875cb0815d62cdbb870a4b666b4", + "language": "Python", + "lines": 243, + "truncated": false, + "block": 9, + "row": 10624 + }, + { + "path": "ptmelt/utils/hp_tuning.py", + "sha256": "f189c58fa3efe54ee4d7e85cd0633c8e09c06cca6bb574a40eb5c8dc9b8d8330", + "language": "Python", + "lines": 660, + "truncated": false, + "block": 9, + "row": 11961 + }, + { + "path": "ptmelt/utils/preprocessing.py", + "sha256": "c05fe4f146fd14d3530d8ab119932c1ca39e6f99212a470db44b5917c368c803", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 8756 + }, + { + "path": "ptmelt/utils/statistics.py", + "sha256": "32d37d7424770358e10fc718e61ee5f0559792064c5f93b9ae965c55e06e3b57", + "language": "Python", + "lines": 384, + "truncated": false, + "block": 9, + "row": 11273 + }, + { + "path": "ptmelt/utils/visualization.py", + "sha256": "ad58bd2842ce8cbd3fc8f083e134f17031228461959d094b7f570deff901d256", + "language": "Python", + "lines": 333, + "truncated": false, + "block": 9, + "row": 10998 + }, + { + "path": "tests/test_hp_tuning.py", + "sha256": "681f2db10a9f960c3de337508237041bfd5332785cf0ca71ed753c167c8bc13d", + "language": "Python", + "lines": 149, + "truncated": false, + "block": 9, + "row": 9250 + } + ] +} \ No newline at end of file diff --git a/manifests/a9/github.com__raidionics__raidionics-models.json b/manifests/a9/github.com__raidionics__raidionics-models.json new file mode 100644 index 0000000000000000000000000000000000000000..c320a1195292cfb776ae578537e6a47506b0a882 --- /dev/null +++ b/manifests/a9/github.com__raidionics__raidionics-models.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/raidionics/raidionics-models", + "url": "https://github.com/raidionics/Raidionics-models/releases/tag/v1.3.0-rc", + "host": "github.com", + "commit": "78a810e490412614dc554158236ee9930a8193f1", + "license": "BSD-2-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3842856c4f19ef762a7a7fcc82bfb65e9258b1cef809e04af80c0ca80deef55c", + "language": "License", + "lines": 24, + "truncated": false, + "block": 9, + "row": 2869 + }, + { + "path": "README.md", + "sha256": "9b23a1b08fb9d3466040c97d8e5e4bcab33fd1e97280c53e43f6d3ebad1eb74a", + "language": "Text", + "lines": 25, + "truncated": false, + "block": 9, + "row": 14563 + } + ] +} \ No newline at end of file diff --git a/manifests/a9/zenodo__15198487.json b/manifests/a9/zenodo__15198487.json new file mode 100644 index 0000000000000000000000000000000000000000..4ae8fdc88b8b1076edb0d11de555078a80339067 --- /dev/null +++ b/manifests/a9/zenodo__15198487.json @@ -0,0 +1,291 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:15198487", + "url": "10.5281/zenodo.15198487", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "d8c459f9760307a066e49fa0d357905e91118cee6eec0ea1b56cbd4eb8cdfc58", + "language": "Text", + "lines": 13, + "truncated": false, + "block": 9, + "row": 14521 + }, + { + "path": "deprecated-code.zip/deprecated-code/beta_tuning.py", + "sha256": "acca7bc7e8f0428a68ad71aa81cf3dec1d62874e276e2c40c71c416672f62584", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6864 + }, + { + "path": "deprecated-code.zip/deprecated-code/cloning.py", + "sha256": "34117caa51710a54b6b6e16b3ce6da4e3e329e09cc6b3650125d86c2deaea21b", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 8199 + }, + { + "path": "deprecated-code.zip/deprecated-code/count_partition_cells.py", + "sha256": "2043651f946557ac62e9760d3e0016a10584dbdba76fc3a8801b40590bad2585", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 9, + "row": 9379 + }, + { + "path": "deprecated-code.zip/deprecated-code/cylinder_test.py", + "sha256": "5b51e09c9a8e388718d8431a27f31651cb9b0d5b9e263b75bcc8808f22e6c9ea", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 8794 + }, + { + "path": "deprecated-code.zip/deprecated-code/extract_rt_pca.py", + "sha256": "5c7415736514beb7d18e8afd9ad47a133d139a0a217688a7b216bd7df09ae916", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 9, + "row": 6590 + }, + { + "path": "deprecated-code.zip/deprecated-code/fig_utils.py", + "sha256": "b088ced8653c584b4f02bffd2812bdd543c687024ad2cfde15658690ff036b93", + "language": "Python", + "lines": 393, + "truncated": false, + "block": 9, + "row": 11148 + }, + { + "path": "deprecated-code.zip/deprecated-code/morphology_placement/callosum_targeting.py", + "sha256": "9299ea07ef911b28385df6834e44f51dc64fb210c0d5771792dd5f3bf176b2f0", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 9120 + }, + { + "path": "deprecated-code.zip/deprecated-code/morphology_placement/neuron_scraper.py", + "sha256": "d9972a5a445d90fc089cf5ae18a520562f6c3abead3267297e86a03968e845b0", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6711 + }, + { + "path": "deprecated-code.zip/deprecated-code/morphology_placement/plot_morphology.py", + "sha256": "c49bd0605ee953653225f1077729009fb7b158bd779c72172984080eff934398", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6651 + }, + { + "path": "deprecated-code.zip/deprecated-code/morphology_placement/to_data_arrays.py", + "sha256": "99703fa563c79d54987312a4e9678812e7f77183c3e50c52bb6d27b84da6d4bd", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 9, + "row": 6469 + }, + { + "path": "deprecated-code.zip/deprecated-code/plot_mesoscale.py", + "sha256": "0ae510da0364b6eb77926540c0656530b28fae507be29f0c7ae1cfa72b093291", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 9, + "row": 8814 + }, + { + "path": "deprecated-code.zip/deprecated-code/rt_conn_debug.py", + "sha256": "52398aa856dfabef974ea537586a7ab09323b0c04060cf190d38e15303c550e9", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 9, + "row": 9174 + }, + { + "path": "offline-scripts.zip/offline-scripts/closed_loop_analysis.py", + "sha256": "472ce7f0849163f25b4ebe2d6973a006731eb8ed3156f654c9e65d105b8b9c1e", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 9, + "row": 9122 + }, + { + "path": "offline-scripts.zip/offline-scripts/fill_connections.py", + "sha256": "5d962b227a5599747205eee258d2740be27cbd3f686c6fc15c009fba7bab3d9e", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8760 + }, + { + "path": "offline-scripts.zip/offline-scripts/sensitivity_analysis/calb1_threshold_analysis.py", + "sha256": "34a261a64cb96e4c8507ff2254cfef2d1fbb6224e7a3a6148c1365c4ade16e50", + "language": "Python", + "lines": 432, + "truncated": false, + "block": 9, + "row": 11270 + }, + { + "path": "offline-scripts.zip/offline-scripts/sensitivity_analysis/compact_beta_analysis.py", + "sha256": "06da67a31ff580d8e68222238dae9300794034182eedfb4e6353b436da638dab", + "language": "Python", + "lines": 314, + "truncated": false, + "block": 9, + "row": 10839 + }, + { + "path": "offline-scripts.zip/offline-scripts/sensitivity_analysis/degree_distribution_analysis.py", + "sha256": "1adb2d6546552ff45f2556f2c5252bedbee8a48a461aee396bc6a87656250750", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 9, + "row": 8913 + }, + { + "path": "offline-scripts.zip/offline-scripts/sensitivity_analysis/plot_tcrt_spatial_scatter.py", + "sha256": "5cccd0cd7a4de21b807920f5b74f05a68554ca18606d6992e0dd24ceb6942e90", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7405 + }, + { + "path": "offline-scripts.zip/offline-scripts/sensitivity_analysis/rt_beta_dist.py", + "sha256": "f2d23c7efb32026087b2158f7b9264a2dc1fffcc842645a486b536518fbf4b1f", + "language": "Python", + "lines": 258, + "truncated": false, + "block": 9, + "row": 10422 + }, + { + "path": "offline-scripts.zip/offline-scripts/sensitivity_analysis/rt_r_analysis.py", + "sha256": "114f37d7158cb1d380db2fc76557517d980bca9107395d8b7fe63f135bcf1633", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 9, + "row": 9463 + }, + { + "path": "offline-scripts.zip/offline-scripts/sensitivity_analysis/rtrt_deg_dist_analysis.py", + "sha256": "3eba25093810f209deae5ceb623ff97632220e0951d7d3d834f5e3aecc9cda7e", + "language": "Python", + "lines": 315, + "truncated": false, + "block": 9, + "row": 11055 + }, + { + "path": "offline-scripts.zip/offline-scripts/sensitivity_analysis/rtrt_optimisation.py", + "sha256": "241295a0197f667cfe0cc02fb06f4d47b02d38399cb6a9e7af4673282083b975", + "language": "Python", + "lines": 295, + "truncated": false, + "block": 9, + "row": 10789 + }, + { + "path": "offline-scripts.zip/offline-scripts/sensitivity_analysis/slicer_utils.py", + "sha256": "18665af3c60c6d8ade3a19aa05c8eb9c06ef63a9aa3ff16f7a4ec503d55e537b", + "language": "Python", + "lines": 464, + "truncated": false, + "block": 9, + "row": 11662 + }, + { + "path": "offline-scripts.zip/offline-scripts/sensitivity_analysis/spatial_connectivtiy_analysis.py", + "sha256": "c5190da3f931fcd7684cda19642cc6df8555443e6a01d17b787252aea04b2abd", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 9, + "row": 9407 + }, + { + "path": "offline-scripts.zip/offline-scripts/sensitivity_analysis/spatial_utils.py", + "sha256": "42c4e7e02cc9bfcc91b859d4af03c3c953f45c9392e67436698c56a39b330ffc", + "language": "Python", + "lines": 470, + "truncated": false, + "block": 9, + "row": 11665 + }, + { + "path": "offline-scripts.zip/offline-scripts/sensitivity_analysis/store_rt_r_dist.py", + "sha256": "1bc6a1ffd634e7078ae200dce679e9ad1b9b096c589dfed8cdcb4fd590ce0a2c", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 9812 + }, + { + "path": "offline-scripts.zip/offline-scripts/sensitivity_analysis/store_tc_cyl_dist.py", + "sha256": "c5f1167c9548d49721da24ea295cc6ec0f8b1824ef1fad893e3bb187c24fb00a", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 9658 + }, + { + "path": "offline-scripts.zip/offline-scripts/sensitivity_analysis/tc_cyl_analysis.py", + "sha256": "666c520f3fbe5cc1330d8a75027339364bd2dbc0502a752d8672dba2fde0b359", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 9, + "row": 8467 + }, + { + "path": "offline-scripts.zip/offline-scripts/store_scaffold_info.py", + "sha256": "8a730f68d11aab4bf4d18ec5f5a2adaf7bb2043873886b3a3f547c3acb83ad99", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 9, + "row": 8667 + }, + { + "path": "offline-scripts.zip/offline-scripts/update_rtrt_connections.py", + "sha256": "0160fa0f39625693af8c3b69289c22527d5a7d069cb087506691e0ca2b5e8479", + "language": "Python", + "lines": 243, + "truncated": false, + "block": 9, + "row": 10579 + } + ] +} \ No newline at end of file diff --git a/manifests/aa/github.com__epfl-lcsb__latex.json b/manifests/aa/github.com__epfl-lcsb__latex.json new file mode 100644 index 0000000000000000000000000000000000000000..b8192a5ea1a8dbe39dc87779ae494a9bc8830362 --- /dev/null +++ b/manifests/aa/github.com__epfl-lcsb__latex.json @@ -0,0 +1,210 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/epfl-lcsb/latex", + "url": "https://github.com/EPFL-LCSB/LaTeX/tree/latex_v1", + "host": "github.com", + "commit": "1460551a8f5a397b9edaa36c54431d3ad81f4dd8", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Figure_2.ipynb", + "sha256": "9c46cf7eeaad5db46fe39726e928499c610d69352740c1ce57021b2bff911043", + "language": "Jupyter", + "lines": 561, + "truncated": false, + "block": 9, + "row": 2642 + }, + { + "path": "Figure_3.ipynb", + "sha256": "010e979b90af93cf7343fb61f0c13762a4f0f7e07e0c1602b9425fc18c59af05", + "language": "Jupyter", + "lines": 270, + "truncated": false, + "block": 9, + "row": 2468 + }, + { + "path": "Figure_4.ipynb", + "sha256": "bdf14280b55c35a4aab50a4681a9b57a1b8be39002008c01fd56c25f02ee7fab", + "language": "Jupyter", + "lines": 474, + "truncated": false, + "block": 9, + "row": 2619 + }, + { + "path": "Figure_6_1.ipynb", + "sha256": "2a56dcfb3167886075c1a27ceadb0820f7a2b1f0e71397c06e78694f8de452c8", + "language": "Jupyter", + "lines": 544, + "truncated": false, + "block": 9, + "row": 2616 + }, + { + "path": "Figure_6_2.ipynb", + "sha256": "1093923becb6c519565c5a7a9ae0aea970f71eee2f5a6627b4c4d87032865cd2", + "language": "Jupyter", + "lines": 800, + "truncated": false, + "block": 9, + "row": 2685 + }, + { + "path": "LICENSE", + "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4", + "language": "License", + "lines": 201, + "truncated": false, + "block": 1, + "row": 2216 + }, + { + "path": "README.md", + "sha256": "1090c9cc1e5924c9f0f8217988ffc3ea207b3bced49f113371ba57e914b5ebb0", + "language": "Text", + "lines": 40, + "truncated": false, + "block": 9, + "row": 14532 + }, + { + "path": "REKINDLE_latent.py", + "sha256": "3ac1bfad893d5a53c7c6020882348bb40092677798a205437badd5900bd96588", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7274 + }, + { + "path": "study_1 - analysis.ipynb", + "sha256": "7311d68e75c53526a78c6d5cecd75e578d43b78e5689361485a1bea26bbaf0ee", + "language": "Jupyter", + "lines": 665, + "truncated": false, + "block": 9, + "row": 2673 + }, + { + "path": "study_2 - analysis.ipynb", + "sha256": "d117f8f68c41c76c8ea47683f5a3289a3e155e0367526c52acca20ccda7c14f0", + "language": "Jupyter", + "lines": 389, + "truncated": false, + "block": 9, + "row": 2542 + }, + { + "path": "yeast_study/2-load_and_generate_latent.py", + "sha256": "a456e0df9c860fde58e6e2f864dae6301c2abce188b05cd20088d24e5a01a8ef", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 9, + "row": 8608 + }, + { + "path": "yeast_study/5-latent_analysis.py", + "sha256": "9ea521ee3812e7219eb09556336d06cdd6f0ce05ffe163bce5cfc01ffb400d9d", + "language": "Python", + "lines": 166, + "truncated": false, + "block": 9, + "row": 9720 + }, + { + "path": "yeast_study/6-latent_analysis-pipeline.py", + "sha256": "5071964867e8101b11474d06f0de58d88565fc33cdb0ae25939fa864f5cd6dd0", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 8389 + }, + { + "path": "yeast_study/helpers/helper_no_docker.py", + "sha256": "4627101629514bf197b4162bb6daf39653359e9b6b1a7b5a8c73645a33c65b0d", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 9, + "row": 9845 + }, + { + "path": "yeast_study/helpers/helpers_latent.py", + "sha256": "cf81bc9d125e9114df72a3e13b9b791237a98a9d0ebddad123ab2527754e6109", + "language": "Python", + "lines": 1439, + "truncated": false, + "block": 9, + "row": 12450 + }, + { + "path": "yeast_study/helpers/helpers_latent_pipeline.py", + "sha256": "3edfe09538eb7044364c11a5bf188f8ba34eddaca2d4ed18bc5c096358b5a3d5", + "language": "Python", + "lines": 571, + "truncated": false, + "block": 9, + "row": 11656 + }, + { + "path": "yeast_study/helpers/integrate_ODEs_yeast.py", + "sha256": "a45103a0f913d0898b9b3d3eacf96b217ef2e72fce8150d10eba91da3bf1f72a", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 10015 + }, + { + "path": "yeast_study/helpers/jacobian_solver_yeast.py", + "sha256": "99372d60fcc17096670f59b96ffc92ca326f6228e4c9e72756f4daefac921fd7", + "language": "Python", + "lines": 212, + "truncated": false, + "block": 9, + "row": 10609 + }, + { + "path": "yeast_study/helpers/npy_to_hdf5_yeast.py", + "sha256": "82f19abdfafb2be4d4deb66610c5bd7af51175969411a18bd80927b59bdbfbc2", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 9, + "row": 9636 + }, + { + "path": "yeast_study/helpers/yeast_prepare_helper.py", + "sha256": "3a31adecb6f9d61356504dc001d5eff289d4ae7dc1c9424df9cd332b8ff49472", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7531 + }, + { + "path": "yeast_study/latent_analysis_plots.ipynb", + "sha256": "4e61e7971a395e3aaa1a95ac9fe4147d827c43dab6dee275d5a8ac6446f4841f", + "language": "Jupyter", + "lines": 216, + "truncated": false, + "block": 9, + "row": 2417 + }, + { + "path": "yeast_study/workspac.ipynb", + "sha256": "9c4c8877a86a33f08deb5a31f0ef587fbf2233d57c7c75789d82e6efcb7cb6db", + "language": "Jupyter", + "lines": 1035, + "truncated": false, + "block": 9, + "row": 2693 + } + ] +} \ No newline at end of file diff --git a/manifests/aa/github.com__epfl-lcsb__renaissance.json b/manifests/aa/github.com__epfl-lcsb__renaissance.json new file mode 100644 index 0000000000000000000000000000000000000000..cbd82c6db4ba34e7cf7f0bc3863b56947faf0300 --- /dev/null +++ b/manifests/aa/github.com__epfl-lcsb__renaissance.json @@ -0,0 +1,1326 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/epfl-lcsb/renaissance", + "url": "https://github.com/EPFL-LCSB/renaissance", + "host": "github.com", + "commit": "0fb8c253d2fed6236b9c35b291da6e8626cf7303", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.txt", + "sha256": "c6596eb7be8581c18be736c846fb9173b69eccf6ef94c5135893ec56bd92ba08", + "language": "License", + "lines": 202, + "truncated": false, + "block": 9, + "row": 2901 + }, + { + "path": "README.rst", + "sha256": "83f2f2b52f27682e5ac88a2f8b3f5c450b929baed45dfdf83661e2f987f628d1", + "language": "Text", + "lines": 86, + "truncated": false, + "block": 9, + "row": 14596 + }, + { + "path": "doc/autodoc.sh", + "sha256": "7abf87352c89b2cbe8294f3129d586e979bf77d8e8f39a7fba95c347a857c2d8", + "language": "Shell", + "lines": 4, + "truncated": false, + "block": 9, + "row": 13897 + }, + { + "path": "doc/conf.py", + "sha256": "ff8088806e6dc92707c6f4ed818d377435dc2039adab76711a1f5dd75273bd4a", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 9, + "row": 9553 + }, + { + "path": "docker/utils/activate_gurobi.sh", + "sha256": "2078296e4a4c407ed7410239c63d71e300442e38fc6c1fb1e5e479956e56b1e9", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 9, + "row": 14031 + }, + { + "path": "docker/utils/install_chrome.sh", + "sha256": "97ef554727111af3df94b8b0dcfc82d2633bbea1f6171bac5076b5314c56a32a", + "language": "Shell", + "lines": 24, + "truncated": false, + "block": 9, + "row": 14105 + }, + { + "path": "docker/utils/install_cplex.sh", + "sha256": "f92cef248d0d7f8f07da05486503a68c69d10cfdbb6ca9edb406a390d2891b0c", + "language": "Shell", + "lines": 23, + "truncated": false, + "block": 9, + "row": 14131 + }, + { + "path": "docker/utils/install_gurobi.sh", + "sha256": "2b5b1c6c30abe1a0d8c6b643f6906e5ea4c9e77c15f77669b8bba61e7f0fee46", + "language": "Shell", + "lines": 30, + "truncated": false, + "block": 9, + "row": 14126 + }, + { + "path": "docker/utils/install_sundials.sh", + "sha256": "27c8d600bd929c22c29c6811ee4538f791f95c5b2e2ab9c1df683ce6a86dac73", + "language": "Shell", + "lines": 38, + "truncated": false, + "block": 9, + "row": 14130 + }, + { + "path": "docker/work/1-renaissance.py", + "sha256": "5515ef6997af5691a08ab86fbcc1e1620b59a6816976b76d924168ff2d86f6f0", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 8980 + }, + { + "path": "docker/work/2-load_and_generate.py", + "sha256": "e280fb37eae4c611f7b2ab5c7a27bb36bc671a4926f7a960ac02df539402e5b2", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7358 + }, + { + "path": "docker/work/3-integrate_ODEs.py", + "sha256": "b92f4fd58a8d2430918651221b82f46c74bb0d304520b3a5de07586b3898ce7a", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 9, + "row": 6754 + }, + { + "path": "docker/work/4-bioreactor_simulation.py", + "sha256": "64a2742b9cfc2659daeb05d712b079966e17526c588478fceafed966465c95dc", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 9, + "row": 6762 + }, + { + "path": "docker/work/evostrat/evolution_strategy.py", + "sha256": "10dc70f1964eb86b92aec3cfb53acdca1aff95f9e38549fd4748b33b97cf4a66", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 8747 + }, + { + "path": "docker/work/evostrat/feed_forward_network.py", + "sha256": "86a2d85d005071fe3bfd5acebec565de044ea3190a238091063e3a5324c6e082", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7149 + }, + { + "path": "docker/work/evostrat/init_mlp.py", + "sha256": "19a71ddba1b1e6968c1a79897db76f143eabed9d2d28f4643707834e50f6ca60", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 9, + "row": 9246 + }, + { + "path": "docker/work/evostrat/noise_input.py", + "sha256": "b2fb4f8061a4dc00b0af5e1c6d1c84830ea0fe7b85bff980a81d9f9eb5cf8aa5", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6387 + }, + { + "path": "docker/work/evostrat/rewards.py", + "sha256": "c6dd6e9b1e71f287580b96771a472ce075afb495b9756a344315b152f47fa89e", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 7995 + }, + { + "path": "docker/work/helper.py", + "sha256": "650feec16fec8b6fe8d8b3e7d369d8d05902951f3ffc5eac28526451df726a2d", + "language": "Python", + "lines": 194, + "truncated": false, + "block": 9, + "row": 9445 + }, + { + "path": "docker/work/kinetics/bioreactor.py", + "sha256": "f6dc03b37476e8b581844603e145bf7545d668c2642282060f14d0203273dd74", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 9, + "row": 9439 + }, + { + "path": "docker/work/kinetics/integrate_ODEs.py", + "sha256": "917c01de975fb37963c03a46447fd07c8184edf98e3fa554c8e34fa2be7875df", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 9946 + }, + { + "path": "docker/work/kinetics/jacobian_solver.py", + "sha256": "0e11f8db849b70578392feac6f171ea5e4abbbc21c73ea1f75ea7733d9104329", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 9, + "row": 10524 + }, + { + "path": "docker/work/kinetics/npy_to_hdf5.py", + "sha256": "c8e9ab5973a41191c41a1836fe4f30a49f30574e56dae15f6d038246f16c0af8", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9567 + }, + { + "path": "docker/work/plot_results.ipynb", + "sha256": "36509dc151127547a1837deab53598e77b3c6d034872da291d2f98e535fa7373", + "language": "Jupyter", + "lines": 197, + "truncated": false, + "block": 9, + "row": 2406 + }, + { + "path": "setup.py", + "sha256": "2557ac4a887ddd5a67854ceb6294511eae7331f22d5363e7d608aef973592fd0", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 9, + "row": 8470 + }, + { + "path": "skimpy/__init__.py", + "sha256": "654a36195aa1b3e96de835f1b197d20c16c41de91b96b1777d044be687eed422", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 6948 + }, + { + "path": "skimpy/analysis/__init__.py", + "sha256": "b89efc42927c13e7ef7894b63626721953a4dbce9e8dc45a101f2b26c2430f3a", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 6949 + }, + { + "path": "skimpy/analysis/gsa/__init__.py", + "sha256": "654a36195aa1b3e96de835f1b197d20c16c41de91b96b1777d044be687eed422", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 6948 + }, + { + "path": "skimpy/analysis/mca/__init__.py", + "sha256": "fcc4c925921f9c25e010e949ed3e6ca04b344700cfb1dd7c4d5a550c6eec3d2c", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 7051 + }, + { + "path": "skimpy/analysis/mca/concentration_control_fun.py", + "sha256": "76cab86a3fd801a76161bba14d5845e233702600986c33990642ec129535c190", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 9, + "row": 10057 + }, + { + "path": "skimpy/analysis/mca/elasticity_fun.py", + "sha256": "15f74ac9b7d91e7fbfecc657c3f09fa99037e709a2fa16ddf26bae2c39a2ba9d", + "language": "Python", + "lines": 154, + "truncated": false, + "block": 9, + "row": 9727 + }, + { + "path": "skimpy/analysis/mca/flux_control_fun.py", + "sha256": "1ec064b0bfe5eff73697c2902e461fd47e8de2b85b3b5ae966118d58f0c0f437", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 9, + "row": 9633 + }, + { + "path": "skimpy/analysis/mca/jacobian_fun.py", + "sha256": "c4d62e6b119ad18ab3cc167df46a6addfdf2285aa08c96349f6acdb047b988b8", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 9, + "row": 9366 + }, + { + "path": "skimpy/analysis/mca/make.py", + "sha256": "9fb3b3cde272f7cd13b5c73ba4b34eb7319122fb30b24d69d3775467168f0863", + "language": "Python", + "lines": 233, + "truncated": false, + "block": 9, + "row": 10812 + }, + { + "path": "skimpy/analysis/mca/prepare.py", + "sha256": "7bebb9c86dff0c7f1f07cbdd266d8a16a402a9efab0260842f64630e7f8d889f", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7434 + }, + { + "path": "skimpy/analysis/mca/utils.py", + "sha256": "a85dec493baa55f217dae416db1ef9feafb420688e932f02c25fb08479d9ee94", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 9, + "row": 10474 + }, + { + "path": "skimpy/analysis/mca/volume_ratio_function.py", + "sha256": "4fb8bfcf4a7a24bfd1dc46a1a754e2748be700e3ec03a6d88f4315a7e082d831", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 7959 + }, + { + "path": "skimpy/analysis/modal/__init__.py", + "sha256": "9241f427ed7c3ded23ac8d0c95078ce4a914570d58211c6a6ea5e96360c36974", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 6983 + }, + { + "path": "skimpy/analysis/modal/modal_matrix.py", + "sha256": "ab5a944c810e8be26126933415aada472d644e1f72b8c669b690ae448caa8096", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 9, + "row": 8651 + }, + { + "path": "skimpy/analysis/ode/__init__.py", + "sha256": "7730be4a59faf4bfde6877eb2ac793ebcccfec141a2a7d465f5a7dce7b82a2d0", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7054 + }, + { + "path": "skimpy/analysis/ode/flux_fun.py", + "sha256": "69bb0d7d60851c40d904288907c347e2eb47bbecb0ebbca55fe80ac9fc49a2d2", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 8156 + }, + { + "path": "skimpy/analysis/ode/gamma_fun.py", + "sha256": "60055d69377f76fdc9785d21a9fd6bedc6c20a8cb2f94280cadf829eab57fb68", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7120 + }, + { + "path": "skimpy/analysis/ode/ode_fun.py", + "sha256": "c11e4a15f145b8896470bdff3b946a96d4ee4f4a3ec183940f33dae0058767c8", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 9, + "row": 8642 + }, + { + "path": "skimpy/analysis/ode/sample_concentrations.py", + "sha256": "5d93e36f0db0a8767c27e455fa24c3eb09f3e9e29e7e8ddb034ef84b2cbbf3b2", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 8521 + }, + { + "path": "skimpy/analysis/ode/symbolic_jacobian_fun.py", + "sha256": "d342433447ae2eccbd4b42fbda2e417873b6984ae200a34acd2efac54be217b3", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9268 + }, + { + "path": "skimpy/analysis/ode/utils.py", + "sha256": "eceb3cdc969549c8d1cd1da9eeb3bd59ae796800af063194bbf151aa4e16d2cf", + "language": "Python", + "lines": 298, + "truncated": false, + "block": 9, + "row": 10957 + }, + { + "path": "skimpy/analysis/oracle/__init__.py", + "sha256": "ec5b0089b018156439716497d35967b8e32477d8f871f2c54677ecc9b81a68f7", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7102 + }, + { + "path": "skimpy/analysis/oracle/add_min_displacement.py", + "sha256": "7694d5c2ad86bc8e2ccff57bb23ffad302af756147009562272ff160a07cae54", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7725 + }, + { + "path": "skimpy/analysis/oracle/dummy_free_energies.py", + "sha256": "c9d512ee79c8f05d1952cfb8ad0af97288e1bc173e8530fce88c383e6c24b593", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 9, + "row": 10096 + }, + { + "path": "skimpy/analysis/oracle/fix_directionality.py", + "sha256": "62f85fcd2b4c4a11caf6d549ba2fadf2fef6a9f7bbb1cc47a0e6cd511efe2995", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 7611 + }, + { + "path": "skimpy/analysis/oracle/flux_concentration_ratios.py", + "sha256": "f16f70d6decba09c798087f03445d3eb5d61ff6704c26e7ad9f16ce6750989f2", + "language": "Python", + "lines": 243, + "truncated": false, + "block": 9, + "row": 10575 + }, + { + "path": "skimpy/analysis/oracle/load_pytfa_solution.py", + "sha256": "55f52cbfbde63ceb23524bda11bf022b5d38bba27941014860677618fc12adfe", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 9, + "row": 9436 + }, + { + "path": "skimpy/analysis/oracle/minimum_fluxes.py", + "sha256": "015b2aafdd799a078602ae89545aba4a52b36c34053e3ae3341c77bfc2696d76", + "language": "Python", + "lines": 317, + "truncated": false, + "block": 9, + "row": 10992 + }, + { + "path": "skimpy/core/__init__.py", + "sha256": "5a27edf739bb2eec47c179241675712036c7c9fe5d8a100a56ef9d99fad44ef0", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7078 + }, + { + "path": "skimpy/core/compartments.py", + "sha256": "11e8fc2691fa40abcc2664be973f06e0360240a8fb2fbbbb5e787e6045f992f5", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7457 + }, + { + "path": "skimpy/core/itemsets.py", + "sha256": "7602cf013a94057af9bb4c3893add9d5654df1a6819ef957f9d01487a7d5c134", + "language": "Python", + "lines": 194, + "truncated": false, + "block": 9, + "row": 9889 + }, + { + "path": "skimpy/core/kinmodel.py", + "sha256": "58501b453eb01cb8ae4aafa66a2bf35da4cc9d80e8f989951949489f95ac6ec1", + "language": "Python", + "lines": 416, + "truncated": false, + "block": 9, + "row": 11458 + }, + { + "path": "skimpy/core/modifiers.py", + "sha256": "e3ff5044d94d66962c6858d5cb0e82b399a1e5a44194b1d8f9c341c1202336f6", + "language": "Python", + "lines": 399, + "truncated": false, + "block": 9, + "row": 11191 + }, + { + "path": "skimpy/core/parameters.py", + "sha256": "11adfc14279c00715353ac3f01528107196ed668c05070952665316a8ef177b9", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 9, + "row": 10072 + }, + { + "path": "skimpy/core/reactions.py", + "sha256": "aaade62c2b1602c452bb7d8fbfc2c9b77e453cefdb8468b2830e8ec87afe689e", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 9, + "row": 9398 + }, + { + "path": "skimpy/core/reactor.py", + "sha256": "fe206e9dae24ee46f84385b5d3e07caeadb922e97fcb672ec780ce30d26c84cc", + "language": "Python", + "lines": 360, + "truncated": false, + "block": 9, + "row": 11298 + }, + { + "path": "skimpy/core/solution.py", + "sha256": "7c47e5e14af5d572addd43eb9d175f96fecb09ecc7153b860ae80918a9e40e98", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 9, + "row": 8430 + }, + { + "path": "skimpy/cython/nullspace.h", + "sha256": "e9e791c94ebbcba2756105bb356a13ffde81d613fc6087f1fb62625c9b4148d9", + "language": "C/C++", + "lines": 4, + "truncated": false, + "block": 9, + "row": 1109 + }, + { + "path": "skimpy/io/__init__.py", + "sha256": "654a36195aa1b3e96de835f1b197d20c16c41de91b96b1777d044be687eed422", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 6948 + }, + { + "path": "skimpy/io/generate_from_cobra.py", + "sha256": "8afc95ff2cc47eaa0bcaa97fe2aa1309d0c9149c23e11d3374d2c7c251de1f91", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 9, + "row": 10058 + }, + { + "path": "skimpy/io/generate_from_pytfa.py", + "sha256": "93ea4a5d0a9f1a70995672fd206c55333b6018024980a4bf7f2d4b2cc3d4a5c8", + "language": "Python", + "lines": 161, + "truncated": false, + "block": 9, + "row": 9897 + }, + { + "path": "skimpy/io/model_generator.py", + "sha256": "df0fc81672f753ab521f09de42c86b470a123db7f5aae4c9a7473c168142f95a", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 9, + "row": 8539 + }, + { + "path": "skimpy/io/utils.py", + "sha256": "e6d4d83d988974f5ac09b4e000cc6327a62b6bcd87b982c345b2c77e20e8de61", + "language": "Python", + "lines": 216, + "truncated": false, + "block": 9, + "row": 10226 + }, + { + "path": "skimpy/io/yaml.py", + "sha256": "b48f3e474688799f93bdcdc145d62af228c8675ff08299018f54a74c49a0f9ee", + "language": "Python", + "lines": 331, + "truncated": false, + "block": 9, + "row": 11178 + }, + { + "path": "skimpy/mechanisms/__init__.py", + "sha256": "8537b23e0ffdf11605b79e26b12463b5a0cb3b01ec7ac1c80b9c9dadcf051cd3", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7465 + }, + { + "path": "skimpy/mechanisms/bi_uni_reversible_hill.py", + "sha256": "25dfbf3db47dbcd0a7add1dcb9519f9d4790b14d3c2676818b6a1e6ada17cbcd", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 9, + "row": 9982 + }, + { + "path": "skimpy/mechanisms/convenience.py", + "sha256": "25df30268c34a8684466767a2e962e811a80766c8fefa490706ec1c06082a8b2", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 9, + "row": 10588 + }, + { + "path": "skimpy/mechanisms/convenience_with_inihibition.py", + "sha256": "2a66379c11f38c0421f5b3be378afe24e2aecafede93b5152e8593542316b933", + "language": "Python", + "lines": 261, + "truncated": false, + "block": 9, + "row": 10913 + }, + { + "path": "skimpy/mechanisms/gene_expression.py", + "sha256": "dec5b25127e14325bdf76f11568a408c18c9a4c8ecb48c572eea1423544187a6", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 9, + "row": 10229 + }, + { + "path": "skimpy/mechanisms/generalized_elementary_kinetics.py", + "sha256": "f3a5776b7a13963aa031092494c07fb255456c1c3f34c09da6044e9fd5acc589", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 9, + "row": 10546 + }, + { + "path": "skimpy/mechanisms/generalized_reversible_hill_n_n.py", + "sha256": "9aba4ea62abb2dd0b244e12973c86b3e88c51aff71dce1f93a528fa681e46b14", + "language": "Python", + "lines": 237, + "truncated": false, + "block": 9, + "row": 10706 + }, + { + "path": "skimpy/mechanisms/generalized_reversible_hill_n_n_h1.py", + "sha256": "854b41a53a0a5de77cbdac45fa5b9e6fcd377d26c2555ae89cf52370938e77cd", + "language": "Python", + "lines": 237, + "truncated": false, + "block": 9, + "row": 10740 + }, + { + "path": "skimpy/mechanisms/irrev_hill.py", + "sha256": "b54ddf995fba0c7fb92aba89214bb4723af1417a2030bb2a9004835c615e8644", + "language": "Python", + "lines": 161, + "truncated": false, + "block": 9, + "row": 9615 + }, + { + "path": "skimpy/mechanisms/irrev_m_n_michaelis_menten.py", + "sha256": "259acf59506e32aa2b33f6f9fd7aa263f7e1c1327b5d8c546796609f8c446049", + "language": "Python", + "lines": 182, + "truncated": false, + "block": 9, + "row": 10081 + }, + { + "path": "skimpy/mechanisms/irrev_massaction.py", + "sha256": "45b9aa2f7958a8b05a60731602d3ade17c646bccb418d666fcab395e6e59ae82", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 9753 + }, + { + "path": "skimpy/mechanisms/mechanism.py", + "sha256": "eb9e59bf0f33e65d9b77f5406d2fb195f88bf66f2db69c0075af8924b2407ebc", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 9, + "row": 9224 + }, + { + "path": "skimpy/mechanisms/michaelis_menten.py", + "sha256": "3537b13b182bfdbc501f66d48628936cf3674f7d0d1c141886850a120dbcfb6a", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 9, + "row": 10531 + }, + { + "path": "skimpy/mechanisms/rand_bi_bi_michaelis_menten.py", + "sha256": "917f21816c24360132614c26bffa12669d22b97ef2f0f21923ec105f518af737", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 9708 + }, + { + "path": "skimpy/mechanisms/rev_massaction.py", + "sha256": "5a8a824feec98b721d2e81613fe054bc6ea34530f387aa85791ef14ed5564f81", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 9, + "row": 9817 + }, + { + "path": "skimpy/mechanisms/uni_bi_reversible_hill.py", + "sha256": "2f43fe5d3309e7116ae290c04e22007af7ce05ebb2b0f558912ec2c9e6cedad8", + "language": "Python", + "lines": 178, + "truncated": false, + "block": 9, + "row": 9954 + }, + { + "path": "skimpy/mechanisms/utils.py", + "sha256": "a44103f9b4cdb6a6037a9050e95b0eabd0b48fbe67b11c4def908b7a09008b7b", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7369 + }, + { + "path": "skimpy/sampling/__init__.py", + "sha256": "1acf424e921195d4b7c34db7ae5c7ecd71d67b2cbe74185722a1b6f7c6f2a059", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7089 + }, + { + "path": "skimpy/sampling/cma_es_parameter_sampler.py", + "sha256": "4afe4d86501bc64d5ff8b60714c91f7dbb0d301f1011169e8979744fd4f79e32", + "language": "Python", + "lines": 241, + "truncated": false, + "block": 9, + "row": 10416 + }, + { + "path": "skimpy/sampling/flux_concentration_sampler.py", + "sha256": "aafa833e3e57e70252d81c3a12ca9457be58baf925cd58b0e35219cfa2db7666", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7644 + }, + { + "path": "skimpy/sampling/flux_parameter_function.py", + "sha256": "7955ed2cd07a39391618d9195c9fee72bbe41547ce225541b98dbf73f2befba2", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8321 + }, + { + "path": "skimpy/sampling/ga_flux_concentration_sampler.py", + "sha256": "d7ebf68661d1370da594c5ec0fb7a3e6c9c0b45d5ccf78ed10a1fbd454174a4a", + "language": "Python", + "lines": 243, + "truncated": false, + "block": 9, + "row": 10557 + }, + { + "path": "skimpy/sampling/ga_parameter_sampler.py", + "sha256": "569b1d7d41b10489257778e6628c1aa98b4c56131aaea873952c98a5618f860d", + "language": "Python", + "lines": 234, + "truncated": false, + "block": 9, + "row": 10401 + }, + { + "path": "skimpy/sampling/parameter_sampler.py", + "sha256": "065c4d8c2fcd0c05175c9dc9f164e10e776f5b5fd17121eac6c379ecafad4337", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7624 + }, + { + "path": "skimpy/sampling/saturation_parameter_function.py", + "sha256": "a5a0484164561f73b0e92da3b64ab337f6a84ee055035c4ad09970f290bd8d22", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9672 + }, + { + "path": "skimpy/sampling/simple_parameter_sampler.py", + "sha256": "3a27e7ae01b6a20d90be20d0deb509e41eddb444581328741d261d6c182f88cc", + "language": "Python", + "lines": 207, + "truncated": false, + "block": 9, + "row": 10391 + }, + { + "path": "skimpy/sampling/simple_resampler.py", + "sha256": "19c3587c5e35af95e8a732d7054e33c3d6b4a7a6e39f069d95206b9efb06b309", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 9, + "row": 9616 + }, + { + "path": "skimpy/sampling/utils.py", + "sha256": "567cba7bdbda894a53334e2980c7e6ae837d75f9ccfb1567acd1080465daf5f0", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 8833 + }, + { + "path": "skimpy/simulations/reactor.py", + "sha256": "c970a2b8fba8f6376a502fa67a07ba36b38bea9f9f99abc7725bebc177150a0b", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 8768 + }, + { + "path": "skimpy/utils/__init__.py", + "sha256": "98966b3c2a9d9df2775b251c9201053863a94c9967fc5128e843cbec40031c88", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 7002 + }, + { + "path": "skimpy/utils/compile_sympy.py", + "sha256": "a6b443c0218546db8ba52b06f5b6bf81acd3dfd15b8306c00da0139b95c7241b", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 9, + "row": 10146 + }, + { + "path": "skimpy/utils/constants.py", + "sha256": "9aee5f95c11552f5b9827c5f476f48c0de36affa0dbc7a6097e5bfb0c5d334ab", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7060 + }, + { + "path": "skimpy/utils/constructors.py", + "sha256": "11644b59a0232924b4642d223630801fb5129baf0a80c2deed55407fa79ab1d8", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 8040 + }, + { + "path": "skimpy/utils/conversions.py", + "sha256": "5d1bcba0369e065a2ee8da041c00a7b2305b548118b191b54f922ceae9024df4", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7452 + }, + { + "path": "skimpy/utils/general.py", + "sha256": "1322d25991c36d52dd8891758c26df22058401b32d62b422b5678157a2a1d9bf", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 9197 + }, + { + "path": "skimpy/utils/logger.py", + "sha256": "e2e07a74117708db118a8f0fb35a0a748f43fd01258fd827b2981dd5293582ff", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 9, + "row": 7966 + }, + { + "path": "skimpy/utils/medium.py", + "sha256": "7c19b882ec2d16bf96aa59095af8b88944bdd7bbdcd61bc304bd1717524552e3", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7222 + }, + { + "path": "skimpy/utils/moieties.py", + "sha256": "880cdaa8010f7fbadc28fec364b9947b804ee39ee5cc43fea68232a48b4da971", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 9, + "row": 8463 + }, + { + "path": "skimpy/utils/namespace.py", + "sha256": "09fdfd414dbbd437cc32a2d8a9cf4f4f7da7dd7510973ae7bc792664a32717a6", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7268 + }, + { + "path": "skimpy/utils/scaling.py", + "sha256": "dd9cdca639fa44916f0db185e75b4e54946a90feb44c8042deb54c8fa4413717", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7212 + }, + { + "path": "skimpy/utils/tabdict.py", + "sha256": "e1413ce13074a48154dc049f12b776c7632d4f65deb11474973f89ec186cff7f", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8133 + }, + { + "path": "skimpy/utils/tensor.py", + "sha256": "140339916266d462dbed860df6b09daa2829ed6d8fe507f6d6bd40e8476bd96b", + "language": "Python", + "lines": 214, + "truncated": false, + "block": 9, + "row": 9911 + }, + { + "path": "skimpy/viz/controll_coefficients.py", + "sha256": "28114b3295592521b63a3f2844e21ccffc01d2b80a85d3b867a78b5d5ee24aae", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8048 + }, + { + "path": "skimpy/viz/escher.py", + "sha256": "20307d744a17e8a2efcdfbab9b02980326c9ac68072c81fd5e88468606b660f7", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 9, + "row": 8845 + }, + { + "path": "skimpy/viz/flux_profile.py", + "sha256": "45624f8cb5c0689eac9abf1bdc4fa30f15e04e2097ffef23783c846c266b4d9a", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 7931 + }, + { + "path": "skimpy/viz/modal.py", + "sha256": "6bd071d4bc58da6928cca255177df570cf95f8f2146e40ca0b888f8ad4fe1954", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 8824 + }, + { + "path": "skimpy/viz/plotting.py", + "sha256": "f9085c5e9578567a3190b36bc084d19c6e281108471500e4d39b0a8fb2ce68db", + "language": "Python", + "lines": 204, + "truncated": false, + "block": 9, + "row": 9854 + }, + { + "path": "skimpy/viz/sensitivty.py", + "sha256": "95e9ee6188cd6eb886cb6c497413d49363bd42cd3b41fbf0e10a80e98de8a248", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8166 + }, + { + "path": "skimpy/viz/utils.py", + "sha256": "7f35f394be2caf4a228b64552a7bb3d160ef106abad6b82018619d22ae66c200", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 8562 + }, + { + "path": "tests/settings.py", + "sha256": "8f22153a24620213a1a36c014e94ac641b1ff55f6a7fa9a50107fbd88cf70299", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6330 + }, + { + "path": "tests/test_GEEK.py", + "sha256": "8c5347094047aa058cc1a02dcfaa71fe793134ebb377038a76f0313e59f2604d", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 9, + "row": 9630 + }, + { + "path": "tests/test_ORACLE.py", + "sha256": "f0221667b7e05581d48d83c779e490fa70f314cee94c5444c64ebaa519dc932c", + "language": "Python", + "lines": 249, + "truncated": false, + "block": 9, + "row": 10375 + }, + { + "path": "tests/test_io.py", + "sha256": "f1eb43925e9960971e4fed43fac5e40b1dbb9e4476b73486b001fa15cc1a9df4", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 9, + "row": 8402 + }, + { + "path": "tests/test_nullspace.py", + "sha256": "cb348d1a8ffff99b122d5dbd47d39e014f3ab9c2c08a0420cf746f629cd52158", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 6910 + }, + { + "path": "tests/test_sampling.py", + "sha256": "0c603e4fe5664512d6425a0d1a08ffac1d2d697b9cb6a635a28a8cace5b65c3f", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7260 + }, + { + "path": "tests/utils.py", + "sha256": "c84fce47ad937c81448df609c2156e5de3b16491871e4d5ce4201940cf89cc69", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7801 + }, + { + "path": "tutorials/GSA/tutorial_GMCA.py", + "sha256": "ca86e3a0af93ee460ce36962ba078dc5d08e1bf729e73bb02569578ff99777a3", + "language": "Python", + "lines": 248, + "truncated": false, + "block": 9, + "row": 10659 + }, + { + "path": "tutorials/ORACLE/tutorial_toy.py", + "sha256": "3eb8002d28667f3c0c384bd0338e9a992524fa3c3d038c1e17808f92f1c510b1", + "language": "Python", + "lines": 229, + "truncated": false, + "block": 9, + "row": 10250 + }, + { + "path": "tutorials/ORACLE/tutorial_varma.py", + "sha256": "9c37a96ef76cb58208e84514fcb9facecea5709b914e2f61a6c3b717c50ab717", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 9, + "row": 10742 + }, + { + "path": "tutorials/basics/tutorial_boundaries.py", + "sha256": "5bca905dac0faaf977630aa2ed7867e2d71bcc7489f0d01a5adfc941c02103d9", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8004 + }, + { + "path": "tutorials/basics/tutorial_import_cobra.py", + "sha256": "57114494f6e9b6d0a9e7f7316ce3e7b5a98168c59f10fc2c61e086ed417cb176", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7356 + }, + { + "path": "tutorials/basics/tutorial_import_pytfa.py", + "sha256": "1de265f59808e7684835c51a975a27ecf069cd1a5360a7547958a7bbd2e45a53", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 9, + "row": 8081 + }, + { + "path": "tutorials/basics/tutorial_ode_with_fluxes.py", + "sha256": "7766b19059e422780033d32bdff3c236056efe918356aac09f16357f9375b073", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 7970 + }, + { + "path": "tutorials/genetic_ciruit/tutorial_synthetic.py", + "sha256": "695b917f9b7792d5f13ff769fb877071c5993badf95632cd252f4b9403487a6e", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 9, + "row": 9656 + }, + { + "path": "tutorials/mechanisms/tutorial_convenience.py", + "sha256": "a1a797db240fbc11709332f87650c0aa4079103bc5cbb63ae755999c0bc39456", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 9, + "row": 8063 + }, + { + "path": "tutorials/mechanisms/tutorial_convenience_inhibition.py", + "sha256": "f6d0f2c842b450b9749f07a5faaeec7f89b107eef1b4db2c822ec17ffaf1933c", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 9, + "row": 8556 + }, + { + "path": "tutorials/mechanisms/tutorial_generalized_hill_1_1_inhibited.py", + "sha256": "2e4397dab7d52898bcf30df319716edc04894b5795d4884fe2a91bd77ec1785a", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 9, + "row": 9073 + }, + { + "path": "tutorials/mechanisms/tutorial_generalized_hill_n_n.py", + "sha256": "4a9da3ab3d054616540567584ba219268a3d42253f7bdd4ac08c651a6ec3fac5", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 9, + "row": 8177 + }, + { + "path": "tutorials/mechanisms/tutorial_michaelismenten.py", + "sha256": "a1b896130cd79cdbe074b9e6538281b4f3b1fe0d713c6561eb8aac3e6daab6f9", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 8843 + }, + { + "path": "tutorials/mechanisms/tutorial_reversible_hill.py", + "sha256": "65e6ec3ad66c9cfad14922507c0401b9697408d85722218a8edae3106c9e601e", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 8487 + }, + { + "path": "tutorials/metabolic/tutorial_metabolic.py", + "sha256": "49fa5831d64268a7c6f32000c97ada024805f3b12281338ab4976cc0f3e4e05d", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 9, + "row": 9509 + }, + { + "path": "tutorials/parameter_sampling/tutorial_dependent_non_linear_fluxes.py", + "sha256": "de046b5182c3e0eed255471a9776f816ddad4ba17357c08bbad535a42e012aaa", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 9, + "row": 10274 + }, + { + "path": "tutorials/parameter_sampling/tutorial_non_linear_fluxes.py", + "sha256": "9dc2e58bf077981d0ace30148420ecc49deee7e0e7d9f4884429793996a2a60e", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 9040 + }, + { + "path": "tutorials/reactor/tutorial_multistrain.py", + "sha256": "40b838e25013e9b97fa4f8a1e637b6bacb55f4d015a864c2feef4850eca44db0", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 9, + "row": 9154 + }, + { + "path": "tutorials/reactor/tutorial_singlestrain.py", + "sha256": "6b71e5a938829054891787bebb54fae25cfa0a2cb3426184ff8546806bf7a6a5", + "language": "Python", + "lines": 179, + "truncated": false, + "block": 9, + "row": 9770 + }, + { + "path": "tutorials/signaling/tutorial_oscillations.py", + "sha256": "4bb4d8d064b7de45ada6e074376707429143a708af4acf21fa45006ef9467206", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 9, + "row": 8832 + }, + { + "path": "tutorials/signaling/tutorial_steady_state.py", + "sha256": "2610a08c84af16d8006809838bd4d928fe90ca2161bbb6922ab607e5e2a42885", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 9, + "row": 9035 + } + ] +} \ No newline at end of file diff --git a/manifests/aa/zenodo__18753067.json b/manifests/aa/zenodo__18753067.json new file mode 100644 index 0000000000000000000000000000000000000000..c6879099c230b0eb7433f667850c1909445f3a04 --- /dev/null +++ b/manifests/aa/zenodo__18753067.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18753067", + "url": "10.5281/zenodo.18753067", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.txt", + "sha256": "951d5b4761f5709b28374cbfff1b5793e780005fffe816ad34cdab1f958cea97", + "language": "Text", + "lines": 237, + "truncated": false, + "block": 9, + "row": 14723 + }, + { + "path": "barcode_counts/extract_cb_umi_barcode_from_bam.py", + "sha256": "238f32faf2e172f31b888080e3367eff2039d5dd00d805ad82bfbd67df3e993b", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 9, + "row": 8367 + }, + { + "path": "barcode_counts/extract_cb_umi_from_bam.py", + "sha256": "93afd3001227a4d0a277d67de7206c118219c4924d2ba6d9c495ca5a9c144480", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 9, + "row": 7361 + }, + { + "path": "barcode_counts/filter_and_correct_barcodes_v3.py", + "sha256": "a1de6adc082744e126615f57efbb18d68671e90c21b8df0824c6f68d766d35da", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 9, + "row": 11064 + } + ] +} \ No newline at end of file diff --git a/manifests/ab/zenodo__18925037.json b/manifests/ab/zenodo__18925037.json new file mode 100644 index 0000000000000000000000000000000000000000..880bd17baa4e42061245cbaf32545a0b95a1e81e --- /dev/null +++ b/manifests/ab/zenodo__18925037.json @@ -0,0 +1,102 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18925037", + "url": "https://doi.org/10.5281/zenodo.18925037", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "hPICAs-main.zip/CNN/01_prepare_build_model.py", + "sha256": "a944953905616e53159a51f998aa7e826c5423f11c210897fe6533b45f328ad8", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9279 + }, + { + "path": "hPICAs-main.zip/CNN/02_build_model.py", + "sha256": "7d20b8e0f7440f0915a0d784ba746caf509b76e800e0ad880274499967ca05b1", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 9, + "row": 9986 + }, + { + "path": "hPICAs-main.zip/CNN/03_identify_salient_region.py", + "sha256": "325eb985c2e5bece159e65929a1ae20830b744bc764f66b6f6e682f735696d30", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 9, + "row": 9458 + }, + { + "path": "hPICAs-main.zip/CNN/04_TomTom.py", + "sha256": "ff1dbb5ba7f4bf50250a43fb53d9cb7e03732f0938e6fa3901d8b9bb37cd8589", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 9, + "row": 8766 + }, + { + "path": "hPICAs-main.zip/README.md", + "sha256": "05134fc2a1fb48cbba5a32bc8004207ea36cf31b4b97277ccb6d963b24a360f0", + "language": "Text", + "lines": 17, + "truncated": false, + "block": 9, + "row": 14514 + }, + { + "path": "hPICAs-main.zip/data/identify_hPICAs/chrY_7725804-7726204.mod", + "sha256": "e33fed3046f8967c114be804fabdab838d0681b8356a40197cb512a007d0c5eb", + "language": "NEURON", + "lines": 13, + "truncated": false, + "block": 9, + "row": 6023 + }, + { + "path": "hPICAs-main.zip/identify_hPICAs/01_muscle5_and_phyloFit.py", + "sha256": "a72c76353b1b6b02afe88573850041635ea3f2ace52acd7c7b854f4552e73c5a", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 9, + "row": 9084 + }, + { + "path": "hPICAs-main.zip/identify_hPICAs/02_FastML.py", + "sha256": "639d576c67891a8b1955118d147db6e1a369ea64794c355dace719b3fa16d4af", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8340 + }, + { + "path": "hPICAs-main.zip/identify_hPICAs/03_Alisim.py", + "sha256": "faf728654af63098f5343657f315f90f02f880d3ee4680a04a7fa7407cf23824", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 9, + "row": 9613 + }, + { + "path": "hPICAs-main.zip/variation_effect/cal_variation_effect.py", + "sha256": "49c012f7085c581fbf4aa93ff72b01abd469956bae9bb0be5e245bcad7bd8399", + "language": "Python", + "lines": 235, + "truncated": false, + "block": 9, + "row": 10545 + } + ] +} \ No newline at end of file diff --git a/manifests/ab/zenodo__18962458.json b/manifests/ab/zenodo__18962458.json new file mode 100644 index 0000000000000000000000000000000000000000..9260c0be382131173b28b98b19ff0996e07d91c2 --- /dev/null +++ b/manifests/ab/zenodo__18962458.json @@ -0,0 +1,111 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18962458", + "url": "10.5281/zenodo.18962458", + "host": "zenodo.org", + "commit": "", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "01_eQTL/01_prepdata.R", + "sha256": "54b34334b1e2de3ae94f49b6c48b981e21ee499b04c22245d333df7542715ab8", + "language": "R", + "lines": 69, + "truncated": false, + "block": 9, + "row": 13045 + }, + { + "path": "01_eQTL/02_run_PEER.R", + "sha256": "c0448ae617b3b957f0759c97957bb12cdfdc927562894d4e8fa2dbedc800b1ee", + "language": "R", + "lines": 77, + "truncated": false, + "block": 9, + "row": 12968 + }, + { + "path": "01_eQTL/02_run_PEER_rosmap.R", + "sha256": "c0448ae617b3b957f0759c97957bb12cdfdc927562894d4e8fa2dbedc800b1ee", + "language": "R", + "lines": 77, + "truncated": false, + "block": 9, + "row": 12968 + }, + { + "path": "01_eQTL/03_fastqtl.sh", + "sha256": "c9e5132643c0140f8f957fe2fd69f7302d80d8aefffa97e8456a756a4f532d4b", + "language": "Shell", + "lines": 29, + "truncated": false, + "block": 9, + "row": 14123 + }, + { + "path": "02_finemap_coloc/coloc.R", + "sha256": "66692cce6bad7dfe4623aac37c8e44a71533ee2fe9f5c8727b71c2e65f6d3cb1", + "language": "R", + "lines": 84, + "truncated": false, + "block": 9, + "row": 13070 + }, + { + "path": "02_finemap_coloc/finemap.R", + "sha256": "4a876c41c0388d2fc8b3f1369dbe785a36ef75dbce11f33ac75acfd9168b669f", + "language": "R", + "lines": 37, + "truncated": false, + "block": 9, + "row": 12847 + }, + { + "path": "03_diff_enrich/01_bedtools_categ_intersect.sh", + "sha256": "92cfeec30dec9d5edf4339b624227d80477550e11d33dc81a51e68f878f4c681", + "language": "Shell", + "lines": 5, + "truncated": false, + "block": 9, + "row": 13946 + }, + { + "path": "03_diff_enrich/02_run_enrichment.R", + "sha256": "6223de8f5eca0dce2df4df9e7ffd5edfdcf2798234b8f24a2fe8357e20d6ceb6", + "language": "R", + "lines": 60, + "truncated": false, + "block": 9, + "row": 13002 + }, + { + "path": "04_disease_coloc/coloc_GWAS.R", + "sha256": "7ed5856884003f72cc861811f08af5af92e6d8abedfa99b7101c16cd1ea89244", + "language": "R", + "lines": 130, + "truncated": false, + "block": 9, + "row": 13293 + }, + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "14a0a4729742fa63de71031a2078b62606f17d4d3254206d4bc6afd8fd659828", + "language": "Text", + "lines": 14, + "truncated": false, + "block": 9, + "row": 14473 + } + ] +} \ No newline at end of file diff --git a/manifests/ac/github.com__neurominer-git__neurominer_1.2.json b/manifests/ac/github.com__neurominer-git__neurominer_1.2.json new file mode 100644 index 0000000000000000000000000000000000000000..693a17aa438a81f8d41f5efa8df63fc6e5e2a3cf --- /dev/null +++ b/manifests/ac/github.com__neurominer-git__neurominer_1.2.json @@ -0,0 +1,18003 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/neurominer-git/neurominer_1.2", + "url": "https://github.com/neurominer-git/NeuroMiner_1.2", + "host": "github.com", + "commit": "11e9b92ef4bcc99e1faee760444880aae813b6bd", + "license": "GPL-2.0", + "license_confirmed_by": "license file LICENCE.txt", + "redistribution": "yes", + "files": [ + { + "path": "ComputeMeanSDPerf.m", + "sha256": "1c524508829064ec40b4fae37d9f64471c405ed5e263f50dc23ab55f9b47cf4d", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 3803 + }, + { + "path": "FeatGen/FEAST/FSToolbox/BetaGamma.c", + "sha256": "db508a5a25d294b4a96314460c4797b3b992554772f7601687c6967e3c9cbb07", + "language": "C", + "lines": 196, + "truncated": false, + "block": 9, + "row": 91 + }, + { + "path": "FeatGen/FEAST/FSToolbox/CMIM.c", + "sha256": "a1d0fa96a4422e4f350293f3206b029e09a54807067e7bba57d848e649f3e8dc", + "language": "C", + "lines": 139, + "truncated": false, + "block": 9, + "row": 65 + }, + { + "path": "FeatGen/FEAST/FSToolbox/CompileFEAST.m", + "sha256": "7c8a4b96ac290b6bd99a52706ae5a2db0a3a57caf5d3fa46ab848fca4c09e692", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 9, + "row": 3075 + }, + { + "path": "FeatGen/FEAST/FSToolbox/CondMI.c", + "sha256": "651adefce127a358a4b1e9282bac1a9d2a534d9cc5332b37040fbdc4bc1a8ed9", + "language": "C", + "lines": 167, + "truncated": false, + "block": 9, + "row": 69 + }, + { + "path": "FeatGen/FEAST/FSToolbox/DISR.c", + "sha256": "d7b65b54bb3ca0d109388aebd0bef6de4542184284db1e14132127b07440dec0", + "language": "C", + "lines": 180, + "truncated": false, + "block": 9, + "row": 80 + }, + { + "path": "FeatGen/FEAST/FSToolbox/FCBF.m", + "sha256": "a97864f295f286ec2b1482dee22331e9fff857cec27527a46e3b6cbc235b6d39", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4005 + }, + { + "path": "FeatGen/FEAST/FSToolbox/FSAlgorithms.h", + "sha256": "3303896947a8a712c63a152f0d72a0022413ad6f7b8f0b17a5f62ed4180083b0", + "language": "C/C++", + "lines": 142, + "truncated": false, + "block": 9, + "row": 1663 + }, + { + "path": "FeatGen/FEAST/FSToolbox/FSToolbox.h", + "sha256": "6483f0f8de1ab843463c3da002b8307208b96178d7c2d0780a219c52b0fdd4b4", + "language": "C/C++", + "lines": 73, + "truncated": false, + "block": 9, + "row": 1401 + }, + { + "path": "FeatGen/FEAST/FSToolbox/FSToolboxMex.c", + "sha256": "0a3ab482057233cd13712de3ee956349a83bae6f715aed9000f6b402c8c92d23", + "language": "C", + "lines": 310, + "truncated": false, + "block": 9, + "row": 125 + }, + { + "path": "FeatGen/FEAST/FSToolbox/ICAP.c", + "sha256": "3258c6c33f9b1f73062106e573ff5a3e574bec6b24ddfb69d5157d33fe6414c9", + "language": "C", + "lines": 181, + "truncated": false, + "block": 9, + "row": 87 + }, + { + "path": "FeatGen/FEAST/FSToolbox/JMI.c", + "sha256": "199eca215f904b1336f815120fecdff50c785fca72634cf00fc5318e8eb717ad", + "language": "C", + "lines": 173, + "truncated": false, + "block": 9, + "row": 73 + }, + { + "path": "FeatGen/FEAST/FSToolbox/MIM.c", + "sha256": "b7081b2782ce43f41ae796bb2dd200a48830f95ba24eff9043bc3221b7a5bde4", + "language": "C", + "lines": 127, + "truncated": false, + "block": 9, + "row": 55 + }, + { + "path": "FeatGen/FEAST/FSToolbox/MIM.m", + "sha256": "372b94e400b2e7a6538e1ebed96c1e88df4699d851d1a028a041bb19bc24a6c7", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 9, + "row": 3167 + }, + { + "path": "FeatGen/FEAST/FSToolbox/RELIEF.m", + "sha256": "252b02d34d1857e63a08d69e97e64765640219db23b1ade21e887229431b1a65", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 3969 + }, + { + "path": "FeatGen/FEAST/FSToolbox/feast.m", + "sha256": "e40ae29ff63565a0e6c9be70dd8595fb49437dca67b87c15876f31302908396c", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 9, + "row": 4675 + }, + { + "path": "FeatGen/FEAST/FSToolbox/mRMR_D.c", + "sha256": "0c3814519b3b9cbd6c6edaee0fb14a5842ee47210643fe036241ac75f52736ca", + "language": "C", + "lines": 168, + "truncated": false, + "block": 9, + "row": 72 + }, + { + "path": "FeatGen/FEAST/MIToolbox/ArrayOperations.c", + "sha256": "c114ef436c993423f08f51e3c63ca86a7867e3404f9233e526e2ea0ff6e39032", + "language": "C", + "lines": 311, + "truncated": false, + "block": 9, + "row": 108 + }, + { + "path": "FeatGen/FEAST/MIToolbox/ArrayOperations.h", + "sha256": "6ca8520621cab2e6aad04576dfee84a30841a36114a7f4deacaee4adb8fc6b5a", + "language": "C/C++", + "lines": 98, + "truncated": false, + "block": 9, + "row": 1531 + }, + { + "path": "FeatGen/FEAST/MIToolbox/CalculateProbability.c", + "sha256": "12a0118179ca1052921f6020fd0c0c96555acb1912d18441f7a067e7e4c9a79e", + "language": "C", + "lines": 347, + "truncated": false, + "block": 9, + "row": 116 + }, + { + "path": "FeatGen/FEAST/MIToolbox/CalculateProbability.h", + "sha256": "aaa4bcafe251855de6b1acf37a06ef4d6ea1b486c8327fab75cad66e275801a0", + "language": "C/C++", + "lines": 114, + "truncated": false, + "block": 9, + "row": 1504 + }, + { + "path": "FeatGen/FEAST/MIToolbox/CompileMIToolbox.m", + "sha256": "b76661c84e5f93bfa5880f769e81274655a5fdf53f0e534379d4dd0c9295ed5a", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 9, + "row": 3124 + }, + { + "path": "FeatGen/FEAST/MIToolbox/Entropy.c", + "sha256": "cecccaf148941a3a7782d6469d0d712fa531d8d70cc0f1ba49c1f9b41501d133", + "language": "C", + "lines": 130, + "truncated": false, + "block": 9, + "row": 41 + }, + { + "path": "FeatGen/FEAST/MIToolbox/Entropy.h", + "sha256": "36b6c7a9e333560b99351b6a679c49a03cf9816e86b90b7d947054697fba012d", + "language": "C/C++", + "lines": 71, + "truncated": false, + "block": 9, + "row": 1382 + }, + { + "path": "FeatGen/FEAST/MIToolbox/MIToolbox.h", + "sha256": "347544681d045e0bc3c74e530556a30019ec1325ad552cc8e7c9b4afae841cd7", + "language": "C/C++", + "lines": 58, + "truncated": false, + "block": 9, + "row": 1251 + }, + { + "path": "FeatGen/FEAST/MIToolbox/MIToolbox.m", + "sha256": "e9d5e8895e921c5c357ac99ebce448fcc25ef9362d2f5237d7c44a0520a42d80", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 9, + "row": 4434 + }, + { + "path": "FeatGen/FEAST/MIToolbox/MIToolboxMex.c", + "sha256": "c8b92ce4c35b3fd4399f845c415dd52a4e952f1e539c0242863ca14107bffef0", + "language": "C", + "lines": 502, + "truncated": false, + "block": 9, + "row": 136 + }, + { + "path": "FeatGen/FEAST/MIToolbox/MutualInformation.c", + "sha256": "b64c7770f1eb9e7776c7a5c4f8820fb46f5db75124b8bd9470fc627449a2fde4", + "language": "C", + "lines": 96, + "truncated": false, + "block": 9, + "row": 39 + }, + { + "path": "FeatGen/FEAST/MIToolbox/MutualInformation.h", + "sha256": "abc186ff4c2318e34ac6ff61beb333017efa69dc7cdb6c6fbac53e245746966e", + "language": "C/C++", + "lines": 64, + "truncated": false, + "block": 9, + "row": 1360 + }, + { + "path": "FeatGen/FEAST/MIToolbox/RenyiEntropy.c", + "sha256": "1918a4abf70dc8779f30b781f633dabaacec9a6a42d9b056f8d546b16bf75ec3", + "language": "C", + "lines": 192, + "truncated": false, + "block": 9, + "row": 71 + }, + { + "path": "FeatGen/FEAST/MIToolbox/RenyiEntropy.h", + "sha256": "04a868631a4382b3bc5876b073a89aee65194535de11d1b6ea85fa8a0664eed4", + "language": "C/C++", + "lines": 68, + "truncated": false, + "block": 9, + "row": 1368 + }, + { + "path": "FeatGen/FEAST/MIToolbox/RenyiMIToolbox.m", + "sha256": "c96736e3e23347fda22c2c46f5bb239e73ae56553174a7119b3b33f8aea46d33", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 3965 + }, + { + "path": "FeatGen/FEAST/MIToolbox/RenyiMIToolboxMex.c", + "sha256": "8554baa537524ecaba1e0eb5e860fcdb06e0ca6edc89f11482bce869f78bedcf", + "language": "C", + "lines": 205, + "truncated": false, + "block": 9, + "row": 70 + }, + { + "path": "FeatGen/FEAST/MIToolbox/RenyiMutualInformation.c", + "sha256": "c28e639b88aa2cab71c2e2b01f6fb39f7fb78960f2033c8293db7bbdb7fda162", + "language": "C", + "lines": 96, + "truncated": false, + "block": 9, + "row": 34 + }, + { + "path": "FeatGen/FEAST/MIToolbox/RenyiMutualInformation.h", + "sha256": "3acc5953738270b7f8524d9df35c8b4d66cefbf553823b722e7001e983592601", + "language": "C/C++", + "lines": 61, + "truncated": false, + "block": 9, + "row": 1348 + }, + { + "path": "FeatGen/FEAST/MIToolbox/WeightedEntropy.c", + "sha256": "3f1c3b03c0c74109d9405910a9a3bc418489d9536fcd99b3346a8b745e47930a", + "language": "C", + "lines": 144, + "truncated": false, + "block": 9, + "row": 54 + }, + { + "path": "FeatGen/FEAST/MIToolbox/WeightedEntropy.h", + "sha256": "176ba6f6ad213e03f28807f82cd8221ae7cfcb1cd55a4cbada76d90f480a1914", + "language": "C/C++", + "lines": 68, + "truncated": false, + "block": 9, + "row": 1402 + }, + { + "path": "FeatGen/FEAST/MIToolbox/WeightedMIToolbox.m", + "sha256": "39b7b509d0c4e36a118eff83d26942ee10ed228ddd83477d89323cb1fd661702", + "language": "MATLAB", + "lines": 90, + "truncated": false, + "block": 9, + "row": 4543 + }, + { + "path": "FeatGen/FEAST/MIToolbox/WeightedMIToolboxMex.c", + "sha256": "fdf5074fa2ece7fc3531fb4499396f358cf2db8b1e33e3f0df153360409783a3", + "language": "C", + "lines": 417, + "truncated": false, + "block": 9, + "row": 134 + }, + { + "path": "FeatGen/FEAST/MIToolbox/WeightedMutualInformation.c", + "sha256": "b4b316aca7892d5ccdc2d864d9e255f7362c5406a21595cb105a3922b663670a", + "language": "C", + "lines": 96, + "truncated": false, + "block": 9, + "row": 46 + }, + { + "path": "FeatGen/FEAST/MIToolbox/WeightedMutualInformation.h", + "sha256": "5946824bbf74afea66a78efdedf258a2c14eb95ec6962e10d12e174cfbc0ec0c", + "language": "C/C++", + "lines": 63, + "truncated": false, + "block": 9, + "row": 1372 + }, + { + "path": "FeatGen/FEAST/MIToolbox/cmi.m", + "sha256": "8a3c84fe7df6ca939bba8661ada4c512a2fc4e9f98a2773df1247cd123274eb4", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3422 + }, + { + "path": "FeatGen/FEAST/MIToolbox/condh.m", + "sha256": "a94e3faec324d80fee6e37a3302a726768d2f94f6dd3b049cc77e97ac0720f35", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3305 + }, + { + "path": "FeatGen/FEAST/MIToolbox/demonstration_algorithms/CMIM.m", + "sha256": "431be3c41e121e7a47a1815aaf41fc3cd3138385fa6585b9cca6cd0e10e74f75", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 3905 + }, + { + "path": "FeatGen/FEAST/MIToolbox/demonstration_algorithms/CMIM_Mex.c", + "sha256": "26f461b7bb370e50bfbbde406556ff47d3a1d449fadf239b4981b95dbee63db8", + "language": "C", + "lines": 158, + "truncated": false, + "block": 9, + "row": 56 + }, + { + "path": "FeatGen/FEAST/MIToolbox/demonstration_algorithms/DISR.m", + "sha256": "c2642128ff1634160e861924bee19cd88baea6973458750c651298cf6cc415c0", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4286 + }, + { + "path": "FeatGen/FEAST/MIToolbox/demonstration_algorithms/DISR_Mex.c", + "sha256": "c6381e34c625d4694af5683333b67f58058807fc7507d2bfe4b4cdfcbebb64b3", + "language": "C", + "lines": 199, + "truncated": false, + "block": 9, + "row": 74 + }, + { + "path": "FeatGen/FEAST/MIToolbox/demonstration_algorithms/IAMB.m", + "sha256": "a9685c3dae1ab4edb970d96a37a24f93fb878ade0147deec72cfe7644e102b0d", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 9, + "row": 3874 + }, + { + "path": "FeatGen/FEAST/MIToolbox/demonstration_algorithms/compile_demos.m", + "sha256": "d4161a5b47f2efd02f46e6645bb777f6b375f6c9ce2a7e152231128c0f6b8922", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 9, + "row": 3092 + }, + { + "path": "FeatGen/FEAST/MIToolbox/demonstration_algorithms/mRMR_D.m", + "sha256": "c31e65a0ebfb1708d1227c909d4753829cfa7eaaf14a830638bf3ea3fc3f5486", + "language": "MATLAB", + "lines": 69, + "truncated": false, + "block": 9, + "row": 4199 + }, + { + "path": "FeatGen/FEAST/MIToolbox/demonstration_algorithms/mRMR_D_Mex.c", + "sha256": "cd4ee9f656b50ebf5a7035f6a2f874454873fb8767d73bf7e3514e68d11724f2", + "language": "C", + "lines": 184, + "truncated": false, + "block": 9, + "row": 66 + }, + { + "path": "FeatGen/FEAST/MIToolbox/h.m", + "sha256": "c89a3a18eb6718fabe08da80d19b29e73ad62cdfe78ac072d446c27e89c69142", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3105 + }, + { + "path": "FeatGen/FEAST/MIToolbox/joint.m", + "sha256": "defadcdface416c0cb90ee2758daaa163b6d5848275eff4b2bfb9a42aec0d7e3", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3262 + }, + { + "path": "FeatGen/FEAST/MIToolbox/mi.m", + "sha256": "751c1e033b76e7d03e34a3131177b7e74e733341257329d02e57fc246dbd5cb5", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 9, + "row": 3215 + }, + { + "path": "FeatGen/FEAST/nk_FEAST.m", + "sha256": "fc5d559122a8e474b015e525beee6383ba00bb638ee1164e4595cfd4eb37a7bb", + "language": "MATLAB", + "lines": 86, + "truncated": false, + "block": 9, + "row": 4433 + }, + { + "path": "FeatGen/GFlip/gflip.m", + "sha256": "81aa2dfb88ea181987d34e377a45c8b8c53c0703c0ad24ae9356cc9232c93bcc", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 9, + "row": 4456 + }, + { + "path": "FeatGen/GFlip/gflipHelper.m", + "sha256": "2386882f4912a5e22b65024b820c24ddf3bf57657c62bd4687c6a4d87db67532", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 9, + "row": 4506 + }, + { + "path": "FeatGen/GFlip/gflipHelperGpu.m", + "sha256": "d62f3bd2bfbbd23b2a715c7f501c867893364ebfc138193c0115ffd4fc07670c", + "language": "MATLAB", + "lines": 92, + "truncated": false, + "block": 9, + "row": 4662 + }, + { + "path": "FeatGen/GFlip/gflipOneTime.m", + "sha256": "dba1569195c08017a1d16a0073fdfe9480b8d70b057e9c2dca1fd5c585694999", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 9, + "row": 4976 + }, + { + "path": "FeatGen/GFlip/gflipOneTime_gpu.m", + "sha256": "db32c89af4785a7dc3e05417499927cda90f921ae6044b9dab44adf79626e6da", + "language": "MATLAB", + "lines": 116, + "truncated": false, + "block": 9, + "row": 4987 + }, + { + "path": "FeatGen/GFlip/gflip_gpu.m", + "sha256": "d73c5de9baeccd6b30abc76e843b03c0cb54c054d7f9ce2fb998b6600e415909", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 9, + "row": 4329 + }, + { + "path": "FeatGen/GFlip/gflipmain.m", + "sha256": "ba45644763d595438e8d03556770b9f87f2e5dae43e6cc8a5085e4509afc52d7", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 9, + "row": 3317 + }, + { + "path": "FeatGen/GFlip/gflipmax.c", + "sha256": "0a63a50d06e1fe7f954beefea1abd9402d07cbaddd43d952860c917eb1b038b1", + "language": "C", + "lines": 72, + "truncated": false, + "block": 9, + "row": 14 + }, + { + "path": "FeatGen/GFlip/gflipmin.c", + "sha256": "e43807d134b8f151690b8dfebb86b4ea0cd1f50cde8ccfc45972a80a7bc25807", + "language": "C", + "lines": 85, + "truncated": false, + "block": 9, + "row": 18 + }, + { + "path": "FeatGen/GetSalModeStr.m", + "sha256": "95071e5b64d6f00b717502f6d10f5b29110aa1ffffebde19cf7552254b34c20c", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 9, + "row": 3344 + }, + { + "path": "FeatGen/GetSalModeStrAlgo.m", + "sha256": "052d57571ce7aa0ead9d252e67b8005a6386fdc54cd7387d8c7b01c35210df6a", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3370 + }, + { + "path": "FeatGen/IMRelief/IMRelief_Sigmoid_FastImple.m", + "sha256": "1604b9654b472e4f7943a0a14f6b6063fc78bd83b7fe1c02ead98e4d371c0550", + "language": "MATLAB", + "lines": 218, + "truncated": false, + "block": 9, + "row": 5309 + }, + { + "path": "FeatGen/IMRelief/IMRelief_Sigmoid_FastImple_Multi.m", + "sha256": "8dd82b81745fe16dc4e3f708a1ecf7b6356da9257e3c04cd2fc1f2761513151e", + "language": "MATLAB", + "lines": 172, + "truncated": false, + "block": 9, + "row": 5107 + }, + { + "path": "FeatGen/IMRelief/IMRelief_Sigmoid_FastImple_Predict.m", + "sha256": "74eb2d788cbfc1ba10a0838eac7cf964c7f2abf3333d725f2bd0e3fe048f9ffa", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 9, + "row": 4128 + }, + { + "path": "FeatGen/IMRelief/IMRelief_Sigmoid_FastImple_Predict2.m", + "sha256": "319adf9e6ff78746f69669802c82558e1b1861af8694c221ca01268603842935", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3794 + }, + { + "path": "FeatGen/IMRelief/IMRelief_Sigmoid_FastImple_opt.m", + "sha256": "891e6c4c29ea11ddfbd7e7242ac05110d118622258c4560126f21e86ecff1063", + "language": "MATLAB", + "lines": 180, + "truncated": false, + "block": 9, + "row": 5146 + }, + { + "path": "FeatGen/IMRelief/IMRelief_cost.m", + "sha256": "5d245cbb21e1dd2011b5eaf3ed3f0da3c30429650d750fb5fc07d1a56f197424", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 9, + "row": 3278 + }, + { + "path": "FeatGen/IMRelief/TestMe.m", + "sha256": "5974aed85c4e4b176ad0aba5c12057e737c049e7234a10f866f58b44c66d29ef", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 9, + "row": 4370 + }, + { + "path": "FeatGen/IMRelief/boldify1.m", + "sha256": "97d66efcc9d2c5e5e46363ad9a656708e313fa5431b8f0daf3909efa553b1435", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 9, + "row": 4147 + }, + { + "path": "FeatGen/IMRelief/fabs.c", + "sha256": "c99f0d337089f4445c39f1b131c94e7195d28f418a17400af919fb56cf239883", + "language": "C", + "lines": 41, + "truncated": false, + "block": 9, + "row": 2 + }, + { + "path": "FeatGen/IMRelief/iDetect.m", + "sha256": "e7ba4f7a8393d3d16bc5917f70e9f62639e6676c624ef901768b64f0bf0045fd", + "language": "MATLAB", + "lines": 159, + "truncated": false, + "block": 9, + "row": 5033 + }, + { + "path": "FeatGen/IMRelief/imreliefmain.m", + "sha256": "30a9e6c61ae7e6ff3e08982b3bd642091935daae86bfe46493f70582076a036c", + "language": "MATLAB", + "lines": 101, + "truncated": false, + "block": 9, + "row": 4682 + }, + { + "path": "FeatGen/IMRelief/kNearestNeighbors.m", + "sha256": "a923ff4a536665cef42bd16bd05161796ae42dc080a69a9eccc30dd5b7e55ec2", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3886 + }, + { + "path": "FeatGen/IMRelief/nk_ImReliefVisCVGrid.m", + "sha256": "bdf15773af6f038cfeb767fd1a3089e7bd4bde7af57e8440853fdd7cea2de59f", + "language": "MATLAB", + "lines": 381, + "truncated": false, + "block": 9, + "row": 5681 + }, + { + "path": "FeatGen/MRMR/nk_MRMR.m", + "sha256": "1cb8a01fedd9f6d34e73f38f8a7cd04a588c1a3c5592262e3408062cfb0bd2f8", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 3979 + }, + { + "path": "FeatGen/NNMF/nk_NNMFFeatRank.m", + "sha256": "ebc7c2140c7c63270fa7c0400c3d125c8343f39776426a1fc1b220f88535f54a", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3151 + }, + { + "path": "FeatGen/RGS/RGS.m", + "sha256": "158dcc6449e3c600968666601289a92f7d886b4d2bf477953a8bd92ca3f6dbdb", + "language": "MATLAB", + "lines": 92, + "truncated": false, + "block": 9, + "row": 4710 + }, + { + "path": "FeatGen/RGS/RGSonce.m", + "sha256": "dee70bca4cd2991bacd48e846de9cd337699893fa553f157d452de11333cd12f", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 9, + "row": 4090 + }, + { + "path": "FeatGen/RGS/SKS.m", + "sha256": "25256dad22db0b1cba6bdf241192e9623d0e626a426f195b65dc6aaf17114015", + "language": "MATLAB", + "lines": 92, + "truncated": false, + "block": 9, + "row": 4577 + }, + { + "path": "FeatGen/RGS/corrcoef_select.m", + "sha256": "b01690e5b412a99a573a663622c7f7ba8a280734b7f19308fa9c7d2126f4a9b7", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3687 + }, + { + "path": "FeatGen/RGS/demo.m", + "sha256": "55c8218d27320ddc5385c90dc95094040ca2ce274817884d564d76e7ceeb9a5d", + "language": "MATLAB", + "lines": 133, + "truncated": false, + "block": 9, + "row": 4669 + }, + { + "path": "FeatGen/RGS/fwd_sel.m", + "sha256": "1241f9412b5bac99e663955b657151a85aa736b4a3210663f07c30311d8ec88b", + "language": "MATLAB", + "lines": 101, + "truncated": false, + "block": 9, + "row": 4687 + }, + { + "path": "FeatGen/RGS/getLooNN.m", + "sha256": "049772e0b236f3b74e7b88f66a10bbefc8e799a9d8697b00ac88145331bf8951", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 3978 + }, + { + "path": "FeatGen/RGS/infoGain.m", + "sha256": "442431a7bcd1e720b108e26a2bd1d894e802528a1ee3554d37a037bb12e25b8a", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 9, + "row": 3980 + }, + { + "path": "FeatGen/RGS/info_feat_rank.m", + "sha256": "ff6034453d00dfcaa4113e233968777e170e874d0c346611cee5afb56a1c0f96", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 9, + "row": 3981 + }, + { + "path": "FeatGen/RGS/kNNreg.m", + "sha256": "3e402bdd36f98f7a028495064cfc6ee3fea310a8a7d7a78abe82759589d94165", + "language": "MATLAB", + "lines": 98, + "truncated": false, + "block": 9, + "row": 4680 + }, + { + "path": "FeatGen/RSS/nk_RSS.m", + "sha256": "bb5a7ee2b2439decf63bb48af1f914e5489b7a0f1aaa03257460200bf5371858", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3745 + }, + { + "path": "FeatGen/SA/NextSolution1.m", + "sha256": "0448303f2f621684563c412ac67cb8e64e7f9dcaeb1068e338d91133381e1440", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 9, + "row": 3225 + }, + { + "path": "FeatGen/SA/NextSolution2.m", + "sha256": "b5aaec967e1781bfb2a35b936c67be2cb7d633e1b4819ad28341ffa07a480248", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3402 + }, + { + "path": "FeatGen/SA/NextSolution3.m", + "sha256": "b387a33eda0c7f2be4faa1a7704a541dda025ae07033555b4dc9a71e8c2b25ea", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 9, + "row": 3246 + }, + { + "path": "FeatGen/SA/ObjectiveFunction1.m", + "sha256": "9be756ee47a9e59eabafb68ead941e25be26419e5e53cface194e54cefe5ee44", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3178 + }, + { + "path": "FeatGen/SA/SA_feature_selection.m", + "sha256": "3de52450edbe171158cdba62b2a4ee54f75160ebd8eb85955ca526ef3a499581", + "language": "MATLAB", + "lines": 135, + "truncated": false, + "block": 9, + "row": 5016 + }, + { + "path": "FeatGen/SA/SA_feature_selection_1.m", + "sha256": "8d923807a01a475f8260db6efd66c3be49eab9ebcccb2472722616100e3a961c", + "language": "MATLAB", + "lines": 317, + "truncated": false, + "block": 9, + "row": 5599 + }, + { + "path": "FeatGen/SA/nk_SimAnneal.m", + "sha256": "fa023f06bdeb83a4b675690a8034d4d15ea4b23aa417b3773aad32415791110c", + "language": "MATLAB", + "lines": 173, + "truncated": false, + "block": 9, + "row": 5283 + }, + { + "path": "FeatGen/SVM/GetSVMStruct.m", + "sha256": "1dd358abd9cb27e48a5c0ef4b3df4263db725dd7bf7c125b782600abb93094d5", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3022 + }, + { + "path": "FeatGen/SVM/nk_CreateSVMParamArray.m", + "sha256": "c3ddd71b31b3ddb339a822e3052f0ff26260e231e009f2ebe41efab6a6ee0ab0", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3631 + }, + { + "path": "FeatGen/SVM/nk_GetParamSVM.m", + "sha256": "85f646b8c4df1438edd9ba798d7a56062b6c15121d82b38f18f01e1091f8213b", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 9, + "row": 4278 + }, + { + "path": "FeatGen/SVM/nk_GetTestPerfSVM.m", + "sha256": "728da2a954a8e9efd099d7f3836f38257e3edc59f7687457b7b721840d51a11e", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 3027 + }, + { + "path": "FeatGen/SVM/nk_SVMFeatRank.m", + "sha256": "ae252408d73f12101de780fa41c2c6cef8f92a5a044f9419ca424277c1cd3787", + "language": "MATLAB", + "lines": 141, + "truncated": false, + "block": 9, + "row": 5086 + }, + { + "path": "FeatGen/SVM/nk_SVMVisCVGrid.m", + "sha256": "e0783b669054e0519691a05eda4090fabe73a72da0cd72ca4cc6dda56a1fe084", + "language": "MATLAB", + "lines": 288, + "truncated": false, + "block": 9, + "row": 5592 + }, + { + "path": "FeatGen/Simba/nk_SimbaHelperGpu.m", + "sha256": "c239bd0f5654b6dd40d3fa3ecf1ffe4c0a27775ce36f88fa722e48b549e6db25", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 9, + "row": 4058 + }, + { + "path": "FeatGen/Simba/nk_SimbaLinearSigmoid.m", + "sha256": "007fde3e1fe849985d3460fcc23218f0fdba07a85629958930670e58d9f23c7d", + "language": "MATLAB", + "lines": 146, + "truncated": false, + "block": 9, + "row": 5171 + }, + { + "path": "FeatGen/Simba/nk_SimbaLinearSigmoid_gpu.m", + "sha256": "00461a0628afba026ad346ea2c2463acad97d2061b9b5358dbf91d7b369ac9c1", + "language": "MATLAB", + "lines": 136, + "truncated": false, + "block": 9, + "row": 5067 + }, + { + "path": "FeatGen/Simba/nk_SimbaMain.m", + "sha256": "34f4039e7d02559b8b441658158b59bc1e650d2e7220f9ff802df56fff077e10", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4727 + }, + { + "path": "FeatGen/Simba/nk_simbaHelper.m", + "sha256": "822cda8ab0714523b09f0966a6db89360660c9c44b0f7f59f3408b8eb25bcc88", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 9, + "row": 4517 + }, + { + "path": "FeatGen/Simba/simbamain.m", + "sha256": "e2334e628c1eb306d9770ccd53d1be945ee396f80f62ec4bc504970ab5aa6c01", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3258 + }, + { + "path": "FeatGen/avrRank.m", + "sha256": "23ee19263aa3c535f0ac77ad86a0098c937ca74d0d677c8a9be0350cd9192447", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4131 + }, + { + "path": "FeatGen/bootprocrust.m", + "sha256": "ebdf70812e0220ce522da7a24f685cd25613c774b54e55fc16c2fd31665926e1", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 9, + "row": 3059 + }, + { + "path": "FeatGen/colAUC.m", + "sha256": "000888440a6680bf784a0116581f482bf25da08c327633d0972cd05198d00c66", + "language": "MATLAB", + "lines": 222, + "truncated": false, + "block": 9, + "row": 5484 + }, + { + "path": "FeatGen/discretize.m", + "sha256": "d04c079124eea12b82266eeee97d1a22494490f23ce8c825810f08813974d441", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3609 + }, + { + "path": "FeatGen/kNNm.m", + "sha256": "df023dce1a56ea7877c236f48fc06beb27fc948f1925010c77d0f18073ce8733", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 9, + "row": 3879 + }, + { + "path": "FeatGen/nk_AUCFeatRank.m", + "sha256": "156bc48a99fbcd6b2062ed70c4a30a25e503bf0e41b29b215c8af6daeb774db5", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3304 + }, + { + "path": "FeatGen/nk_AdaptiveThreshold2.m", + "sha256": "95ef8cf779dbbe6b633cb7e05577ab5a1fcc41654486bbac856c97807d7e6968", + "language": "MATLAB", + "lines": 233, + "truncated": false, + "block": 9, + "row": 5442 + }, + { + "path": "FeatGen/nk_BhattacharyaFeatRank.m", + "sha256": "c18644cddbf6befb9eafb8444c53b0052f3eadb04dab634c30226ec8973e1e74", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 9, + "row": 3156 + }, + { + "path": "FeatGen/nk_BootSamp.m", + "sha256": "2774b708a847ef3fc546b6cf4e0568c0913331993940582bcaafdc765b24b1a6", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3323 + }, + { + "path": "FeatGen/nk_CalcSpatConst.m", + "sha256": "be504b98383e11c24aaf42de8d5efcfd7a0f63121a748841ac4dd7c1bb8b7247", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3763 + }, + { + "path": "FeatGen/nk_Cluster.m", + "sha256": "4989f946882ad1b90cbfb0566179c68193ca1a49e358a17dca22f7f889e11ee9", + "language": "MATLAB", + "lines": 126, + "truncated": false, + "block": 9, + "row": 4666 + }, + { + "path": "FeatGen/nk_ComputeCondEntropy.m", + "sha256": "63b1fe065e313a15f900092469957a4fa191595ba34e7d948fc09f81afdba1c1", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 9, + "row": 4264 + }, + { + "path": "FeatGen/nk_ComputeEntropy.m", + "sha256": "3533bfb988e82430f0736920c067554a7930f2631da9ca51b3f76d2431b35d8f", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3099 + }, + { + "path": "FeatGen/nk_CorrMat.m", + "sha256": "13d721ef4acb12564ac45c8e9a758d1c5cb9fb1ef4399cf14762602edc741b50", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 9, + "row": 4187 + }, + { + "path": "FeatGen/nk_DefineThresh.m", + "sha256": "a1a0fd32ab0549ba8ddf56b7376358eddd3c2a082cec8448abfda4cc70573ac7", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 9, + "row": 3655 + }, + { + "path": "FeatGen/nk_EstimKforMI.m", + "sha256": "17307d78a2bc55542b4269fd0a3a1ea9609b1ca0b540334cb53558d818c331a8", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 3827 + }, + { + "path": "FeatGen/nk_EstimKforMIPerm.m", + "sha256": "ad229f9b846f32ae8231fecf9c62cb1eb581c325abfb21602e2b92f9c929039e", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 9, + "row": 3643 + }, + { + "path": "FeatGen/nk_ExtractClusterData.m", + "sha256": "6f0e15e0ae67af48953a3868e80a1a152553ee57e28f6cc24862b484af71b4fa", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3384 + }, + { + "path": "FeatGen/nk_FScore.m", + "sha256": "eb0d6257928ab709177cdfc5294181b4e66e35681cf51a70b38f31ccb37bcf1d", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3074 + }, + { + "path": "FeatGen/nk_FScoreFeatRank.m", + "sha256": "a944722bd979bda8191942f8b1cfcc9caf6fc3bb59fd64ba00fa068824d6ad65", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3844 + }, + { + "path": "FeatGen/nk_FScoreFeatRankMdIqr.m", + "sha256": "4fcc6186301232ad52f3eca75ae3630b199a292d36f87c092794ef2eb79b183e", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3787 + }, + { + "path": "FeatGen/nk_FeatGenEntropy.m", + "sha256": "4b3ba106c3ed32b8919fb3fca704d7898c42102ef1377e428ab99ad407e34abf", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3206 + }, + { + "path": "FeatGen/nk_FeatSel_Cluster.m", + "sha256": "51266e68f4d329632337310b3ad6dd36166214ca59d82e224fda21931f627407", + "language": "MATLAB", + "lines": 389, + "truncated": false, + "block": 9, + "row": 5604 + }, + { + "path": "FeatGen/nk_FilterCondEntropy.m", + "sha256": "e67d499b3c55a1b2482b3f5360c22c46a41072893500864564ac216e33856d08", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 9, + "row": 4134 + }, + { + "path": "FeatGen/nk_FilterInfo.m", + "sha256": "9e1a3080db73dffc86d4f4a1af18bd25991f25ddb05a84f798de501b03b68a1c", + "language": "MATLAB", + "lines": 98, + "truncated": false, + "block": 9, + "row": 4510 + }, + { + "path": "FeatGen/nk_FilterInfoBag.m", + "sha256": "0f7efe47631a7f1fe1340699bb5c78b147c8575fa85c83b68e689ae6c5f64e47", + "language": "MATLAB", + "lines": 89, + "truncated": false, + "block": 9, + "row": 4238 + }, + { + "path": "FeatGen/nk_MI.m", + "sha256": "81e19895118ffea8460ab80f4885dac180c490ef6b529b148ab7ca7bb8911cb9", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 9, + "row": 4395 + }, + { + "path": "FeatGen/nk_MutualInfo.m", + "sha256": "1df39d2214edffab559a5258da64f0459f6240b96ba995c3a238dbee83110693", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 9, + "row": 3245 + }, + { + "path": "FeatGen/nk_PLS.m", + "sha256": "8751949cd6f458f6bad8e76b780b754798ac8aa80b394cef793ae435cd2c9b3b", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 9, + "row": 4815 + }, + { + "path": "FeatGen/nk_PLSpredict.m", + "sha256": "821760d68cf032131168fd901ff05f05839e18f274caf79ed326aa21616fc468", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3229 + }, + { + "path": "FeatGen/nk_Procrustes.m", + "sha256": "c7fc9e55566e5b00480210a9302151c60e77ae9b82992527c1ef5a6c484918e8", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3125 + }, + { + "path": "FeatGen/nk_SmoothImage.m", + "sha256": "0ce3b58091da87796103b3c5d434fd59ba13945b432fd72966cfc3100e217942", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3204 + }, + { + "path": "FeatGen/nk_SpatConst.m", + "sha256": "f938da652b42d332b2cbb1e3f9185f8ce3f9c009fef9525fa27d4fc18d410f6e", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4221 + }, + { + "path": "FeatGen/pnmf/ShowNMFBasis.m", + "sha256": "740926815c97a8fc2bdfb698c1c67e3874288f5305d0d749d7acdc6fe8a6b13e", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3526 + }, + { + "path": "FeatGen/pnmf/idiv.m", + "sha256": "2a113187b7fa5b80661d671b29fd31490c4ce6a22057f2eb87831203f9ce2416", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 9, + "row": 2954 + }, + { + "path": "FeatGen/pnmf/pnmf_demo.m", + "sha256": "dfb409e71442c12ade5b1d154a554c8070445a28b026bb1877aa6ef152dd9760", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 9, + "row": 3754 + }, + { + "path": "FeatGen/pnmf/pnmfeu.m", + "sha256": "eac56433bdfe6fec618daa17c1afefa9220136f3a18e84ec305c652ec6bfb0ec", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 3724 + }, + { + "path": "FeatGen/pnmf/pnmfkl.m", + "sha256": "60d1c39b2ebce2fd35891e346588f267758fbd20d37e1a577c38bc4847fd4524", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 3790 + }, + { + "path": "FeatGen/pnmf/pnmfkl_sparse.m", + "sha256": "fc7c0034198c6e768e42d4ab0ce8f0cb5888fce5bfdec5190dcf75f25ec2de2b", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 9, + "row": 3870 + }, + { + "path": "FeatGen/pnmf/sp_factor_ratio.c", + "sha256": "16391faff7a75f7b15a74f1dc13b0c6b61cf1b1269d1e4de9279f3ed0be74ab7", + "language": "C", + "lines": 58, + "truncated": false, + "block": 9, + "row": 11 + }, + { + "path": "FeatGen/preprocessing.m", + "sha256": "41f5a81000c2cf34b80cf9920a4dbac95a15772780bce494ef13c6db3489215f", + "language": "MATLAB", + "lines": 357, + "truncated": false, + "block": 9, + "row": 5449 + }, + { + "path": "FeatGen/randsample.m", + "sha256": "61d37271f96ceb8a4ed995e343c81a96573bc200065cf0da40a5cf81bb30fc5b", + "language": "MATLAB", + "lines": 114, + "truncated": false, + "block": 9, + "row": 4740 + }, + { + "path": "FeatGen/spear.m", + "sha256": "0233af2212dd57d8fd819458b91ec30af2c4ab4d016bd96896455d862755fcb9", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3331 + }, + { + "path": "FeatGen/suggestBeta.m", + "sha256": "3bfdf0254f76562dfe93f27fb4e6c1d3fa40c68e0e950f167848ec707b0bbc44", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 9, + "row": 4240 + }, + { + "path": "JuSpace/JuSpace_noGUI_2D.m", + "sha256": "06d9b941aa91016b2b38ca9c72ac9bdc60a9cd56c2a566bc25d03530fa2c6a90", + "language": "MATLAB", + "lines": 117, + "truncated": false, + "block": 9, + "row": 4628 + }, + { + "path": "JuSpace/center_of_mass_my.m", + "sha256": "a9ac3c83f651eec87b5fc304d26e7556c13dba77df1150c87257c768e7b9ea55", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 6, + "row": 4022 + }, + { + "path": "JuSpace/compute_DomainGauges_2D.m", + "sha256": "e572d2c9ca6c61ce0e924a05f14977e4cbe9841e069d17ce7230fd01a4fbb63a", + "language": "MATLAB", + "lines": 300, + "truncated": false, + "block": 9, + "row": 5535 + }, + { + "path": "JuSpace/compute_exact_pvalue.m", + "sha256": "b32510242970ef1d11d34f4f9e939ec8c3c3ef5df740505cab6ccadf05833517", + "language": "MATLAB", + "lines": 152, + "truncated": false, + "block": 9, + "row": 5090 + }, + { + "path": "JuSpace/compute_exact_spatial_pvalue.m", + "sha256": "72293f404a63d2b9f0827854770b3ad6f6fd7e792e5d7e6ab71ea150385ad145", + "language": "MATLAB", + "lines": 171, + "truncated": false, + "block": 9, + "row": 5140 + }, + { + "path": "JuSpace/cv_JuSpace_config.m", + "sha256": "d82756f2acbdac69bc2b425fa68106ff61fb53b1dd7f7df3a242776cf0b40b1d", + "language": "MATLAB", + "lines": 217, + "truncated": false, + "block": 9, + "row": 5335 + }, + { + "path": "JuSpace/cv_apply_JuSpace.m", + "sha256": "6663186b08f23ca62d09a41d2e096ac5dd5a48d5d0e112abecb630d6b85bbd9c", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 4030 + }, + { + "path": "JuSpace/cv_perfJuSpace.m", + "sha256": "d8bef039dfe34d08d42f1e2c4b138cd271878a306386fc3e77630f59bd046783", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3527 + }, + { + "path": "JuSpace/fishers_r_to_z.m", + "sha256": "c59ac9a9ef1192f2b947ea1660c86c54e12e4f5226335e61e3a08ec1ecfa1a2f", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 6, + "row": 2214 + }, + { + "path": "JuSpace/fishers_z_to_r.m", + "sha256": "b9bd68dbaa378183e45f43d5ca48223b972c13e1e74b3a78ef28d0196fe5d16c", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 6, + "row": 2228 + }, + { + "path": "JuSpace/generate_spatial_nullMaps.m", + "sha256": "244b1b0662111ada025d0b7d6c966cd2bb5fd07a9391fb8acb844a4220f4b34a", + "language": "MATLAB", + "lines": 220, + "truncated": false, + "block": 9, + "row": 5416 + }, + { + "path": "JuSpace/isemptycell.m", + "sha256": "fbf9597c39fb63018ef50f44f0e1b8b20e6cc3f7f130b5df327d31788d0fbe92", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3188 + }, + { + "path": "JuSpace/mean_time_course_NM.m", + "sha256": "d10bbd4c011264543469bb9ec00aa59d39654fd9cd11ba8f0f21958008b39552", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 4094 + }, + { + "path": "JuSpace/removenan_my.m", + "sha256": "fda777b913637bcf130f3ea62e556430501d42b3cdc469eea72d2244b964ffb1", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 6, + "row": 4575 + }, + { + "path": "JuSpace/resize_image_JuSpace.m", + "sha256": "ececf37b32db9370de01391154a992954cfc8f35f2c8f85395aefdb48bf2941a", + "language": "MATLAB", + "lines": 330, + "truncated": false, + "block": 9, + "row": 5437 + }, + { + "path": "LICENCE.txt", + "sha256": "63c227d568ce643dedab6a3cc9d7dd49992891248bb29cd05dca5feda03cd8e9", + "language": "License", + "lines": 689, + "truncated": false, + "block": 9, + "row": 2914 + }, + { + "path": "MIToolbox-master/include/MIToolbox/ArrayOperations.h", + "sha256": "bc1f21785c9019a3a3a7eeeeae2f6d43065cc496fe4e12db89a1eca6382d70fd", + "language": "C/C++", + "lines": 100, + "truncated": false, + "block": 9, + "row": 1552 + }, + { + "path": "MIToolbox-master/include/MIToolbox/CalculateProbability.h", + "sha256": "64b6f7741665fdf28e82fd5b46d24a16fb18ab52427a1f4df8a9d532c77a22fe", + "language": "C/C++", + "lines": 142, + "truncated": false, + "block": 9, + "row": 1608 + }, + { + "path": "MIToolbox-master/include/MIToolbox/Entropy.h", + "sha256": "ffc3efca230ec7fd3ba481ff7db368fb10da02c8b7848be20b115b9ce0375668", + "language": "C/C++", + "lines": 70, + "truncated": false, + "block": 9, + "row": 1385 + }, + { + "path": "MIToolbox-master/include/MIToolbox/MIToolbox.h", + "sha256": "99725696ddb11be6b2f92ecd7be6cebb8190a17abb9165717a389d31d2a23d05", + "language": "C/C++", + "lines": 51, + "truncated": false, + "block": 9, + "row": 1197 + }, + { + "path": "MIToolbox-master/include/MIToolbox/MutualInformation.h", + "sha256": "83cc85f9af0dac890d6cdf74dddffcbc3ab900342acd42fb06a43ca5a96c0949", + "language": "C/C++", + "lines": 60, + "truncated": false, + "block": 9, + "row": 1346 + }, + { + "path": "MIToolbox-master/include/MIToolbox/RenyiEntropy.h", + "sha256": "0923d46b8164b2718b0b65802e5483f83aa094ea4e28108407aaf029e7d36f2d", + "language": "C/C++", + "lines": 60, + "truncated": false, + "block": 9, + "row": 1336 + }, + { + "path": "MIToolbox-master/include/MIToolbox/RenyiMutualInformation.h", + "sha256": "c8bd01ca52377d1aaf292c96a8a8e97c27a3eb7e9a21da1b0d66ddbe086c18b6", + "language": "C/C++", + "lines": 58, + "truncated": false, + "block": 9, + "row": 1350 + }, + { + "path": "MIToolbox-master/include/MIToolbox/WeightedEntropy.h", + "sha256": "a6b5f1627c02574c3c55c0c494eb61cdab9618b1f180681472a3ac211b1baf4b", + "language": "C/C++", + "lines": 67, + "truncated": false, + "block": 9, + "row": 1423 + }, + { + "path": "MIToolbox-master/include/MIToolbox/WeightedMutualInformation.h", + "sha256": "8a53099318b8d82564c809ef6590caea923fc512484c4887141cb70ad66f107e", + "language": "C/C++", + "lines": 59, + "truncated": false, + "block": 9, + "row": 1366 + }, + { + "path": "MIToolbox-master/matlab/CompileMIToolbox.m", + "sha256": "e99eaa1af66e88cf026790d989df49adff6d3d1967792efcd1108c04d8bcacce", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 9, + "row": 3230 + }, + { + "path": "MIToolbox-master/matlab/MIToolbox.m", + "sha256": "e3aa24d162ebb249983f84e083bc61441bb52342624243526e3509565a4550cb", + "language": "MATLAB", + "lines": 89, + "truncated": false, + "block": 9, + "row": 4480 + }, + { + "path": "MIToolbox-master/matlab/MIToolboxMex.c", + "sha256": "321b97d87d6338072600d55c2d0a5c40ce7dd0f0a385e362b0768b2b3cae38dd", + "language": "C", + "lines": 496, + "truncated": false, + "block": 9, + "row": 135 + }, + { + "path": "MIToolbox-master/matlab/RenyiMIToolbox.m", + "sha256": "f11bf08f3b578e1f5f0864292e5acf28d8a90530fec52d63cd3c85872a9c17eb", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 9, + "row": 4070 + }, + { + "path": "MIToolbox-master/matlab/RenyiMIToolboxMex.c", + "sha256": "969c4a504ba049b8185590b32338c5af1bcaecca4d4615b4c1b484f402892abe", + "language": "C", + "lines": 190, + "truncated": false, + "block": 9, + "row": 62 + }, + { + "path": "MIToolbox-master/matlab/WeightedMIToolbox.m", + "sha256": "e57c9de7bc1736385f442401310958ab25a80ff183793371250d31f75de0b683", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 9, + "row": 4589 + }, + { + "path": "MIToolbox-master/matlab/WeightedMIToolboxMex.c", + "sha256": "079e63c464768bce4a44908501b051ed9a09d5d103a3d97111dca01dfab368dc", + "language": "C", + "lines": 402, + "truncated": false, + "block": 9, + "row": 130 + }, + { + "path": "MIToolbox-master/matlab/cmi.m", + "sha256": "fd3b46de445b4830d871ef78f40cf93ec985a18bb051ff5f48e4d0ac44193730", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3585 + }, + { + "path": "MIToolbox-master/matlab/condh.m", + "sha256": "34f1b44aa30885859d9c3b7669fe1b766e20b6c7b1bd362fdab71108f3631fe3", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3470 + }, + { + "path": "MIToolbox-master/matlab/demonstration_algorithms/CMIM.m", + "sha256": "431be3c41e121e7a47a1815aaf41fc3cd3138385fa6585b9cca6cd0e10e74f75", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 3905 + }, + { + "path": "MIToolbox-master/matlab/demonstration_algorithms/CMIM_Mex.c", + "sha256": "0cd259ee2d1d52036075d8b605542b393498aa1dd9cc750b5dd2c0d4fd28d20f", + "language": "C", + "lines": 159, + "truncated": false, + "block": 9, + "row": 59 + }, + { + "path": "MIToolbox-master/matlab/demonstration_algorithms/CompileDemos.m", + "sha256": "d1b5c037fbe14d2e34a7ab3d18b43feb0eed95b73cc5991356f948e7194bc049", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 9, + "row": 3183 + }, + { + "path": "MIToolbox-master/matlab/demonstration_algorithms/DISR.m", + "sha256": "c2642128ff1634160e861924bee19cd88baea6973458750c651298cf6cc415c0", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4286 + }, + { + "path": "MIToolbox-master/matlab/demonstration_algorithms/DISR_Mex.c", + "sha256": "eb234c353d4593c6bb7768748b650f758184b75b8dad1a1a99cbed614f217ad1", + "language": "C", + "lines": 202, + "truncated": false, + "block": 9, + "row": 78 + }, + { + "path": "MIToolbox-master/matlab/demonstration_algorithms/IAMB.m", + "sha256": "a9685c3dae1ab4edb970d96a37a24f93fb878ade0147deec72cfe7644e102b0d", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 9, + "row": 3874 + }, + { + "path": "MIToolbox-master/matlab/demonstration_algorithms/mRMR_D.m", + "sha256": "c31e65a0ebfb1708d1227c909d4753829cfa7eaaf14a830638bf3ea3fc3f5486", + "language": "MATLAB", + "lines": 69, + "truncated": false, + "block": 9, + "row": 4199 + }, + { + "path": "MIToolbox-master/matlab/demonstration_algorithms/mRMR_D_Mex.c", + "sha256": "3e816ffb2de443e97884a36567d2ea4cca2fac1223e065fd7bd4564201ab0c47", + "language": "C", + "lines": 185, + "truncated": false, + "block": 9, + "row": 67 + }, + { + "path": "MIToolbox-master/matlab/h.m", + "sha256": "9b80f55cc447b35bb53eadafde5d53afa3eb0ea42ed952328dac971141cbf1a8", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3181 + }, + { + "path": "MIToolbox-master/matlab/joint.m", + "sha256": "dda54e1039b5d1b964b2fb965343eb21bb69a3583be271be989ac3580eb59eed", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3449 + }, + { + "path": "MIToolbox-master/matlab/mi.m", + "sha256": "793d7cadb5a43287c3b905e6fcb68d100ee51c259c194f256f7b926c8add388e", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3315 + }, + { + "path": "MIToolbox-master/src/ArrayOperations.c", + "sha256": "5fd050d3902b43ec4233ed29a7214ff777ed4f45c1985d856e86bb6912568b2b", + "language": "C", + "lines": 342, + "truncated": false, + "block": 9, + "row": 124 + }, + { + "path": "MIToolbox-master/src/CalculateProbability.c", + "sha256": "1763a238cfac5e26a37457263f686a050dfe0b4040635c3ed919f8309bf3b376", + "language": "C", + "lines": 362, + "truncated": false, + "block": 9, + "row": 122 + }, + { + "path": "MIToolbox-master/src/Entropy.c", + "sha256": "df80dd7dfe1c8b9806741d3502141403354b36d494798f3848d5f79965631a54", + "language": "C", + "lines": 134, + "truncated": false, + "block": 9, + "row": 44 + }, + { + "path": "MIToolbox-master/src/MutualInformation.c", + "sha256": "ad4ca65cc1da8fdd8606006f4a38cbe7175e8a214d59da02f49cab0c51bc4850", + "language": "C", + "lines": 121, + "truncated": false, + "block": 9, + "row": 58 + }, + { + "path": "MIToolbox-master/src/RenyiEntropy.c", + "sha256": "529c129be172c91b58a574a8f16939f5aaf79772d0010f7f137f717fe5a81e80", + "language": "C", + "lines": 98, + "truncated": false, + "block": 9, + "row": 31 + }, + { + "path": "MIToolbox-master/src/RenyiMutualInformation.c", + "sha256": "a7ad94c15539206a89be12e69686025b3c9838d925335729f5014f70641e6b7f", + "language": "C", + "lines": 104, + "truncated": false, + "block": 9, + "row": 40 + }, + { + "path": "MIToolbox-master/src/WeightedEntropy.c", + "sha256": "d3311fa2aff66e91ad51763f348d3a0484b60fe3e77f9233e32cbe60a7c59343", + "language": "C", + "lines": 133, + "truncated": false, + "block": 9, + "row": 53 + }, + { + "path": "MIToolbox-master/src/WeightedMutualInformation.c", + "sha256": "642e5da433d0ecb977beea6684c3aa74a7f74f91d8b5fae61123117acbd46c59", + "language": "C", + "lines": 116, + "truncated": false, + "block": 9, + "row": 60 + }, + { + "path": "MIToolbox-master/test/testMIToolbox.c", + "sha256": "58529d5a27c3b6b1cdabd60dbc417cefa95ee4aeb1c0b500a6b022bb2b54e577", + "language": "C", + "lines": 90, + "truncated": false, + "block": 9, + "row": 30 + }, + { + "path": "NeuroMinerMCCMain.m", + "sha256": "e88de83940292ecbaee4d4e2f435ba9e8bda8696bbdf9d096fe3d394ef83fc02", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3310 + }, + { + "path": "Python/cv_py_PerfICA.py", + "sha256": "2730e8ed92588426ffe061028345c8ad54006e79986a03e19c90fa9167dea93c", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7107 + }, + { + "path": "Python/cv_py_classGRDBST_predict.py", + "sha256": "d7474ae8c036f048ffe14ea4daa8a92751f3ec75d632cfca73e275e1d8716155", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7168 + }, + { + "path": "Python/cv_py_classGRDBST_train.py", + "sha256": "fd7aed7de6259f3e34d7382d175f4d5a9a792ebdf79780ec32c302af89ee2398", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7359 + }, + { + "path": "Python/cv_py_classRF_predict.py", + "sha256": "4e5ba619ac73b9ea1dcbb538a3eb91f4af7c7ab1341623b8dd006fac5744b0bd", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6725 + }, + { + "path": "Python/cv_py_classRF_train.py", + "sha256": "0e7b03da2d49721f7d0b23f28094a838e950f5cc6e2649e18707f6975fdbaf9f", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 9, + "row": 8161 + }, + { + "path": "Python/cv_py_regRF_predict.py", + "sha256": "111bb063f65b84c733af5ede82da5c9fc03e5ecedf64d90ab1ecefec184ff050", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7177 + }, + { + "path": "Python/cv_py_regRF_train.py", + "sha256": "239f6a5f76faa1faad9d6cf07c5551d62c93b82658a96fd62f23739d67abb92a", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 9, + "row": 8089 + }, + { + "path": "Python/py2mat.m", + "sha256": "4d78c3648b2cf146bf975a4a7818502826f93670caeb6d937ae75d85284fe779", + "language": "MATLAB", + "lines": 180, + "truncated": false, + "block": 9, + "row": 5272 + }, + { + "path": "README.md", + "sha256": "d26847224806f1311094df4e5520e84c6eade90c55dee9dd3f736f5ccaba5115", + "language": "Text", + "lines": 34, + "truncated": false, + "block": 9, + "row": 14557 + }, + { + "path": "Scale.m", + "sha256": "33f9c94e6d788c6c553b60dfe5ff1ac3cca2797a3e94417a6d33cf2fdda62b2b", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 9, + "row": 3240 + }, + { + "path": "UpdateCVDatamat.m", + "sha256": "8672b09376d57fe4438f20fb2fd6ab6f2cda07a0d60211678f8edf88399f604d", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 4048 + }, + { + "path": "_sphinx_design_static/design-tabs.js", + "sha256": "00a9989c6d54254f32a37e50c7bbc5dab737674231aa2553421f4939624b23e3", + "language": "JavaScript", + "lines": 27, + "truncated": false, + "block": 9, + "row": 2030 + }, + { + "path": "_static/_sphinx_javascript_frameworks_compat.js", + "sha256": "2f1e30341b31300bdc3af29ee4a64e0f40ed15492345387bb47542d9b9b4813c", + "language": "JavaScript", + "lines": 134, + "truncated": false, + "block": 9, + "row": 2061 + }, + { + "path": "_static/clipboard.min.js", + "sha256": "261ffa06f381039cf7d18984d1364c59f3c2b9b60b1fa05d5f9c8c152e4d5be5", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 1417 + }, + { + "path": "_static/copybutton.js", + "sha256": "91a27497196c3062dceaad69abf358af547fc6ecc25323b65c945d3a36b7603b", + "language": "JavaScript", + "lines": 248, + "truncated": false, + "block": 9, + "row": 2086 + }, + { + "path": "_static/copybutton_funcs.js", + "sha256": "4a178ecff5d986b5612029299ac6f4d08c401fe162af30176b501d318b25b753", + "language": "JavaScript", + "lines": 73, + "truncated": false, + "block": 1, + "row": 1148 + }, + { + "path": "_static/design-tabs.js", + "sha256": "00a9989c6d54254f32a37e50c7bbc5dab737674231aa2553421f4939624b23e3", + "language": "JavaScript", + "lines": 27, + "truncated": false, + "block": 9, + "row": 2030 + }, + { + "path": "_static/doctools.js", + "sha256": "2985f25f79e5ddcd1ed494ca63fc85f215f79e0cd156e622ce2bf3cf2cd9445f", + "language": "JavaScript", + "lines": 264, + "truncated": false, + "block": 9, + "row": 2083 + }, + { + "path": "_static/documentation_options.js", + "sha256": "a19b8c0a0ff9ee9a8d184c0bde94fdd94de0c894af4f71f9e427b5cb118f2693", + "language": "JavaScript", + "lines": 14, + "truncated": false, + "block": 9, + "row": 2025 + }, + { + "path": "_static/jquery-3.6.0.js", + "sha256": "f11ddd574892887c994b0105ebb5f0bf82903b81e120c4cf545a80124bf2a69c", + "language": "JavaScript", + "lines": 7407, + "truncated": true, + "block": 3, + "row": 6977 + }, + { + "path": "_static/jquery.js", + "sha256": "ff1523fb7389539c84c65aba19260648793bb4f5e29329d2ee8804bc37a3fe6e", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 1, + "row": 1544 + }, + { + "path": "_static/language_data.js", + "sha256": "d35fde9e52ed4840ec7ed105ddb3302a26eb0f53aa151a9491a2dcce0f5d2534", + "language": "JavaScript", + "lines": 199, + "truncated": false, + "block": 9, + "row": 2066 + }, + { + "path": "_static/scripts/bootstrap.js", + "sha256": "ee05c73bdc3ed860118ed7926089b5e8ec2d75f0b8c1d476908a5350745912f2", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2123 + }, + { + "path": "_static/scripts/pydata-sphinx-theme.js", + "sha256": "1a3c9f99a6aac2dd522231e1eb63d31d6afbe2b89fd028532c6d609e3b503f21", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 9, + "row": 2062 + }, + { + "path": "_static/scripts/sphinx-book-theme.js", + "sha256": "256b8b071260a5ac20cad7bcf0537201ad71b8b7ea4f5d89546c7015fec1138f", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 9, + "row": 2051 + }, + { + "path": "_static/searchtools.js", + "sha256": "306bb4ed7f0208f81bea031e26b9bf893360fe072a1707b04b3097dbed5d58ff", + "language": "JavaScript", + "lines": 531, + "truncated": false, + "block": 9, + "row": 2097 + }, + { + "path": "_static/sphinx-thebe.js", + "sha256": "ae9aab39b9a105ad71bfe095540766d4fcd14ed5d20627694ca6c2e121639f90", + "language": "JavaScript", + "lines": 126, + "truncated": false, + "block": 9, + "row": 2057 + }, + { + "path": "_static/togglebutton.js", + "sha256": "0727f732b137b4e4bccde2ea06e6f6daf2e396e013b89543328ee4f127e5ba84", + "language": "JavaScript", + "lines": 187, + "truncated": false, + "block": 9, + "row": 2082 + }, + { + "path": "_static/underscore-1.13.1.js", + "sha256": "cc10f799cd0f6b65f95c4012445497e5ba3cb9f51964a9468940b27bde98b487", + "language": "JavaScript", + "lines": 2042, + "truncated": false, + "block": 3, + "row": 6959 + }, + { + "path": "_static/underscore.js", + "sha256": "218fb1c1fc72e9af6b866f430be2a67fa376392b4db2f4dbf32772671b6ae55c", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 3, + "row": 6941 + }, + { + "path": "advanced_usage/cv_extract_performanceMetrics_fromNMstruct.m", + "sha256": "b2ef71d72935987038b90af1ea820bfc8fb13e81b8afcfe3989540852e1bb201", + "language": "MATLAB", + "lines": 75, + "truncated": false, + "block": 9, + "row": 4523 + }, + { + "path": "advanced_usage/cv_make_mex_all.m", + "sha256": "0e855d0eeac9e88f50b245e25e308136a5dddf2133f2237d6b0467389f8dba3d", + "language": "MATLAB", + "lines": 120, + "truncated": false, + "block": 9, + "row": 4642 + }, + { + "path": "allcomb3.m", + "sha256": "69d002ea9b164511246a06f19f8f4cb76f8ee89ef2a92907eb1418ae88c59b14", + "language": "MATLAB", + "lines": 113, + "truncated": false, + "block": 9, + "row": 4960 + }, + { + "path": "automation/nk_AutomatePermLeaveSiteOutSamples.m", + "sha256": "66e02c4577ccd35650e47c704f0d773a22074ee91d9b3ba84a318c4fc8d19043", + "language": "MATLAB", + "lines": 257, + "truncated": false, + "block": 9, + "row": 5621 + }, + { + "path": "automation/nk_AutomatePermOOCVSamples.m", + "sha256": "70dcd91deb548f9b8aed76f18da7fc874e825ab43d99a7fcfc048db7255253a2", + "language": "MATLAB", + "lines": 231, + "truncated": false, + "block": 9, + "row": 5567 + }, + { + "path": "cfiles/enumelem.cpp", + "sha256": "f42718fbec6b77263d660f9a5238d6a745b03204f4e1faeee6a8fa77cf282b29", + "language": "C++", + "lines": 31, + "truncated": false, + "block": 9, + "row": 169 + }, + { + "path": "cfiles/extrX.cpp", + "sha256": "de110b62ccd231bf8ede7124e8239980ec7d6b3763627f748f202cc5e6d0c4c1", + "language": "C++", + "lines": 54, + "truncated": false, + "block": 9, + "row": 194 + }, + { + "path": "cfiles/extrY.cpp", + "sha256": "0b56ab965bbab26e794eae033e4b88d8b73b54906fecbdfd3c7dd64a13b26aaa", + "language": "C++", + "lines": 51, + "truncated": false, + "block": 9, + "row": 188 + }, + { + "path": "cfiles/fastAUC.cpp", + "sha256": "e8b4bda40cec567e226b80483d0a3cf1bee583f80bbfe98793674f14ca36ca19", + "language": "C++", + "lines": 159, + "truncated": false, + "block": 9, + "row": 565 + }, + { + "path": "cfiles/fastcorr.cpp", + "sha256": "6e5df35ade3d28b0065a766ecfc542421e39a5fc7f7aa02734e99681cd39507f", + "language": "C++", + "lines": 60, + "truncated": false, + "block": 9, + "row": 314 + }, + { + "path": "cfiles/fdr.cpp", + "sha256": "7cfeaa908e7c8e18bafcee2d39ffd455ad93cdda530974042fc74b93c10e13d2", + "language": "C++", + "lines": 61, + "truncated": false, + "block": 9, + "row": 203 + }, + { + "path": "cfiles/fdr_1d.cpp", + "sha256": "ffef0b88b8d002c2c8b4256f2ae6d7a0378b3325bfcc1bfe5b6a58afb4efff5b", + "language": "C++", + "lines": 56, + "truncated": false, + "block": 9, + "row": 190 + }, + { + "path": "cfiles/fratio.cpp", + "sha256": "4426ce7fcf40ac02e1fd641c68ed2696b80bae3156900d981b06188ec5c6ecd0", + "language": "C++", + "lines": 61, + "truncated": false, + "block": 9, + "row": 204 + }, + { + "path": "cfiles/ftest.cpp", + "sha256": "0d3b1b8743a9962782164e894f90750bc3331eac6e244af2c8000e371fcfe597", + "language": "C++", + "lines": 112, + "truncated": false, + "block": 9, + "row": 381 + }, + { + "path": "cfiles/install.m", + "sha256": "11ce5b78885d5f269ae8050b63640de823ae2ed2c9a98f0cdc404b06e2e87286", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3213 + }, + { + "path": "cfiles/intpow.cpp", + "sha256": "57f56adbe93a2f1baae6589311bd743131621672172abb07f5882a976fc177d9", + "language": "C++", + "lines": 27, + "truncated": false, + "block": 9, + "row": 168 + }, + { + "path": "cfiles/mean_1d.cpp", + "sha256": "8c507cc4a5008d8bf5192ffa313d5f93502cb34016d8b2128ab3886364b907ad", + "language": "C++", + "lines": 24, + "truncated": false, + "block": 9, + "row": 166 + }, + { + "path": "cfiles/mean_2d.cpp", + "sha256": "682d83f682d158f4c8ca82a4671acb214472e717fb586ad33874fd6cd62b8a2f", + "language": "C++", + "lines": 62, + "truncated": false, + "block": 9, + "row": 208 + }, + { + "path": "cfiles/mutin.cpp", + "sha256": "029e18357fc51e72065453c2eb65a46176887990bfcdcd09130ce9ba7f09271a", + "language": "C++", + "lines": 207, + "truncated": false, + "block": 9, + "row": 604 + }, + { + "path": "cfiles/pearson.cpp", + "sha256": "59097959cd4a0f0adafcd831327ddb417cecf7e77bc3dcfcf1aa52b024cabd21", + "language": "C++", + "lines": 213, + "truncated": false, + "block": 9, + "row": 554 + }, + { + "path": "cfiles/prcorr2.cpp", + "sha256": "cc65c7591fd7351591872a111d865b5c5092de252766677d7ff7bebe893270fe", + "language": "C++", + "lines": 429, + "truncated": false, + "block": 9, + "row": 854 + }, + { + "path": "cfiles/resamp.cpp", + "sha256": "681a31803e6b4d4149d49e05647463842b2ad099aef65d3dd62a75cd65699ad2", + "language": "C++", + "lines": 34, + "truncated": false, + "block": 9, + "row": 182 + }, + { + "path": "cfiles/spatconst27.cpp", + "sha256": "003c1de124c2d836dede1f8c64817b84f6a6fb6065c62fdc51903c32e35040e1", + "language": "C++", + "lines": 80, + "truncated": false, + "block": 9, + "row": 258 + }, + { + "path": "cfiles/sumskipnan.cpp", + "sha256": "5263e0b5a3979d5ac3fb0756858ce96dad90737255946a2de91136b7960bc049", + "language": "C++", + "lines": 215, + "truncated": false, + "block": 9, + "row": 622 + }, + { + "path": "cfiles/symbolize.cpp", + "sha256": "0d00c7cef3b5c9c391e05e31ea38d72461b565588114c50357bd5dbac9470373", + "language": "C++", + "lines": 195, + "truncated": false, + "block": 9, + "row": 484 + }, + { + "path": "compute_analytical_pvals.m", + "sha256": "445473e4458c4b9163c62b4edc65cbb2b15bb1a1fe7a4efc7f5c2c88741fe39f", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3647 + }, + { + "path": "config/cv_Label_config.m", + "sha256": "5a8eaf75126c95bb53601b73ab761c742fc58878e16879ec6d46bbf3490ac813", + "language": "MATLAB", + "lines": 228, + "truncated": false, + "block": 9, + "row": 5447 + }, + { + "path": "config/data_import/CalcGlobals.m", + "sha256": "aae781f7f34a59f7f1aa8fd44adba2390120fe74bfc3396b0fc30cf3a509bd26", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 3087 + }, + { + "path": "config/data_import/CheckGlobals.m", + "sha256": "e745568617b0646b7d29a30f03d3fc6bfb65f0e706c9001e9ce7af4303dded94", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 9, + "row": 4723 + }, + { + "path": "config/data_import/CheckImageInfoConsistency.m", + "sha256": "9ee504651dceb65d4fffbb02df4e91749793477769a9378c19e2177831fc7a04", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3691 + }, + { + "path": "config/data_import/CheckLabel.m", + "sha256": "0c4fc7d21460c20ed57a9423ad267f6b2fb988c1455a43c3b7f57bb403584a74", + "language": "MATLAB", + "lines": 186, + "truncated": false, + "block": 9, + "row": 5404 + }, + { + "path": "config/data_import/CheckReadyStatus.m", + "sha256": "b15aca55893fcd0d4e1d9e6752febe96601e25402eedecaa67cc118758cff765", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3029 + }, + { + "path": "config/data_import/CheckTabFile.m", + "sha256": "7335de58b395544702ec3b8460ec33dfb4fc7a0fb84c6f178c77d47c656be971", + "language": "MATLAB", + "lines": 266, + "truncated": false, + "block": 9, + "row": 5617 + }, + { + "path": "config/data_import/DataIO.m", + "sha256": "108aea92b9037bc2345b78ffecbc821e4832b7634150f40c90c27ee244b5a35d", + "language": "MATLAB", + "lines": 1267, + "truncated": false, + "block": 9, + "row": 5977 + }, + { + "path": "config/data_import/DefineLabels.m", + "sha256": "d264b6e50802f48cb1f6e3b9b4ebf08fde50694f4ee323591878771309b2e77e", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3850 + }, + { + "path": "config/data_import/DeleteAll.m", + "sha256": "361708542f3859951600d71316f83f26ec2f31baf6fc92cb271da834023f99d5", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 9, + "row": 2924 + }, + { + "path": "config/data_import/DeleteCovarsInNM.m", + "sha256": "0dfff7369cfba42befd4910ecef976acf564d8a15b13e764cd58f53f4a49e565", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 9, + "row": 3008 + }, + { + "path": "config/data_import/DeleteModalityInNM.m", + "sha256": "108c090ef42920f0e54de378e5f162e042211576bd860ee389e7c69c4e5c7f74", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 9, + "row": 3041 + }, + { + "path": "config/data_import/GenerateMessageEntry.m", + "sha256": "eee9c542e4f97a3fff212b008463adbe5120ad3aa3f9a60c235237ac6f497587", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3100 + }, + { + "path": "config/data_import/ReadNifti.m", + "sha256": "c916c793497f77ac11d43f0a81ff6928568a173178d577fe95a0741e5b69f419", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 4345 + }, + { + "path": "config/data_import/ReadSurf.m", + "sha256": "c2f5d1baf28348c89e8df25819cba638d4971b424e960af09c1d13764a8c1702", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3107 + }, + { + "path": "config/data_import/ReadTabular.m", + "sha256": "1fbd945bf906e6b3e98cf318b69fe7ddc69298c6fee8b46b615f96ed1df69955", + "language": "MATLAB", + "lines": 166, + "truncated": false, + "block": 9, + "row": 5329 + }, + { + "path": "config/data_import/ReadVectors.m", + "sha256": "c4f99ae8fca0a45552660297821e98564896346dde3f014958010a36cedeefff", + "language": "MATLAB", + "lines": 1, + "truncated": false, + "block": 9, + "row": 2916 + }, + { + "path": "config/data_import/RetrieveImageInfo.m", + "sha256": "f9c09ba06695c44cb3cfdcd1c952666a14f87a400b6f15bbac538273d7679468", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3435 + }, + { + "path": "config/data_import/SPMimport.m", + "sha256": "26aed2d2eecabd618f788283802d4cb5db01b78824bacd9626cf96ab3b687ee2", + "language": "MATLAB", + "lines": 259, + "truncated": false, + "block": 9, + "row": 5532 + }, + { + "path": "config/data_import/SetFileFilter.m", + "sha256": "271a8593101c40f64fbbebf3b39107f2bfcee64445917b60226e5fa28cb88e30", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 4169 + }, + { + "path": "config/data_import/TransferModality2NM.m", + "sha256": "6f9e337676380e35fdf01cb2106ca7e4b839e3dd2f76df81a53f4c12e6c7ac05", + "language": "MATLAB", + "lines": 175, + "truncated": false, + "block": 9, + "row": 5243 + }, + { + "path": "config/nk_AskCalibUse_config.m", + "sha256": "357044b010456dbf50dabf0282a401d7ccfbccfdaaad79466dc4c9832924243c", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 3002 + }, + { + "path": "config/nk_CVpartition_config.m", + "sha256": "308e186a3fe050267ecbb07cc344e93497a7e8c32635d035a6308d5dcdf0480c", + "language": "MATLAB", + "lines": 498, + "truncated": false, + "block": 9, + "row": 5860 + }, + { + "path": "config/nk_CheckCalibAvailMenu_config.m", + "sha256": "6e9599a6cf23c90211de9a22a8163bcb8e7eb25b158b2e5d7502d5744341b77b", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3155 + }, + { + "path": "config/nk_CompatParams2.m", + "sha256": "27875850c2fd5f4741d069d1361165e1a97aa48df03280a22a46d88049479e26", + "language": "MATLAB", + "lines": 128, + "truncated": false, + "block": 9, + "row": 4808 + }, + { + "path": "config/nk_ConstructW_config.m", + "sha256": "f5e7d9d4b0fcc277e1861eade7d4ef9a8d8c07f60905eb7053806282f47118c6", + "language": "MATLAB", + "lines": 122, + "truncated": false, + "block": 9, + "row": 5015 + }, + { + "path": "config/nk_CostFun_config.m", + "sha256": "8f2f969d69df9337f0befced98eeb53f822be30a6f1aec1f26932ad5c63cd67e", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3377 + }, + { + "path": "config/nk_DECTRE_config.m", + "sha256": "fc1349390b8cd178942a34fd07131ad154356ab838a5eef5707dee0eb6a2ba76", + "language": "MATLAB", + "lines": 76, + "truncated": false, + "block": 9, + "row": 4460 + }, + { + "path": "config/nk_DataIO3_SpaceDefImage_config.m", + "sha256": "5eb14a4584ea1a763a7ad97e847dab17404b0605e88b16f704ca439ba029a4fc", + "language": "MATLAB", + "lines": 69, + "truncated": false, + "block": 9, + "row": 4539 + }, + { + "path": "config/nk_DataIO_config.m", + "sha256": "6b08398903bff25f7f5240b787a8079c644ee39cce013c0de7a4c0b61030a8b0", + "language": "MATLAB", + "lines": 133, + "truncated": false, + "block": 9, + "row": 5026 + }, + { + "path": "config/nk_DefineCovars_config.m", + "sha256": "b7c419d8140168c6a23f74f16caf677ec8e5b76986c171160f253f0a0e446f0b", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 9, + "row": 3804 + }, + { + "path": "config/nk_Devmap_config.m", + "sha256": "f108d92e7e1b909377fc1f3f61447655bc42e3a99e30c44847628f95ca1ba5e8", + "language": "MATLAB", + "lines": 91, + "truncated": false, + "block": 9, + "row": 4871 + }, + { + "path": "config/nk_DimRed_main_config.m", + "sha256": "1b3fc8991b78614ac643d18ab0d4f2682f71a4389342a8d03bb19754b87a05e9", + "language": "MATLAB", + "lines": 240, + "truncated": false, + "block": 9, + "row": 5570 + }, + { + "path": "config/nk_DiscSym_config.m", + "sha256": "25a8ef604557d0832a3c9ac8a5ef00c47957057616cbb5473665d512a7c7bc17", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 9, + "row": 4699 + }, + { + "path": "config/nk_EnsembleStrategy2_config.m", + "sha256": "3b8f4c121d7d302acc03832de99dce3cb94cf2434ae8289b9da8fbef8de2b758", + "language": "MATLAB", + "lines": 204, + "truncated": false, + "block": 9, + "row": 5556 + }, + { + "path": "config/nk_Ensemble_config.m", + "sha256": "fe3058a97feb3908e5197b998997d43d2fc834b2f10ed07fa8f9909446c6fcf0", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 4059 + }, + { + "path": "config/nk_EvalFunc_config.m", + "sha256": "b4200a06c737f83982e21583d1d609cbd0618789e7ae400a9fac0098c44ad478", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 4698 + }, + { + "path": "config/nk_ExtDim_config.m", + "sha256": "d3d740cd083796e20656156749a85e3ed49bc3ee84e98e898191ed9ad2a408b5", + "language": "MATLAB", + "lines": 75, + "truncated": false, + "block": 9, + "row": 4633 + }, + { + "path": "config/nk_FEAST_config.m", + "sha256": "c93994177074715bf3cfa4a07314c5379284ad9bf068f018ba8a29655ebc32c3", + "language": "MATLAB", + "lines": 77, + "truncated": false, + "block": 9, + "row": 4576 + }, + { + "path": "config/nk_FeatSel_StrCfg.m", + "sha256": "1190acc7eac3313c12614d2ce1c472a89d65522b25a3c4f3977c3d414d3672c2", + "language": "MATLAB", + "lines": 166, + "truncated": false, + "block": 9, + "row": 5053 + }, + { + "path": "config/nk_Filter_config.m", + "sha256": "ecc3d0caee11666f287632b7e160e8b7d31a19c1e6a990431d401aedc06d7b2c", + "language": "MATLAB", + "lines": 173, + "truncated": false, + "block": 9, + "row": 5480 + }, + { + "path": "config/nk_Fusion_config.m", + "sha256": "6c4b2b3471d3fad1b2b774fbe897130bad6c75c202438a28d63ec079b2be51c2", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 9, + "row": 3482 + }, + { + "path": "config/nk_GA_config.m", + "sha256": "46d230f4430464bdbbf9e5f048a386a4b06dfe4951973a9c10fcacc1043cb46a", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 4088 + }, + { + "path": "config/nk_GLMNET_config.m", + "sha256": "a84d19bcbd2fd5790b345122c617ccc858a5cc2a71b654c24cb7e9a15f763b9e", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3557 + }, + { + "path": "config/nk_GenCVdataMaster2.m", + "sha256": "49e7890e2288d7b6226104dd58deee7dc6e0e3deceb2209eaa64f4b7c4531fa2", + "language": "MATLAB", + "lines": 181, + "truncated": false, + "block": 9, + "row": 5340 + }, + { + "path": "config/nk_GenCVresultsMaster.m", + "sha256": "5a3e419160cf533bbaf9875345066c8e56199698a38de691197b6b7eeb0a0d3c", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 9, + "row": 4499 + }, + { + "path": "config/nk_GenDataMaster.m", + "sha256": "dd5d404aba1d98b3ab8fbbdc931e2b0f8c03764ba88cef2abb6348d439a7ab17", + "language": "MATLAB", + "lines": 113, + "truncated": false, + "block": 9, + "row": 4783 + }, + { + "path": "config/nk_GenPreprocMaster2.m", + "sha256": "c7948a204153b42ccb0e3ea492e2a1e5f889c45dc93c6a30011cb2942d22b757", + "language": "MATLAB", + "lines": 167, + "truncated": false, + "block": 9, + "row": 5280 + }, + { + "path": "config/nk_GenVISdataMaster.m", + "sha256": "7d3a95a102afedcd60b91342f63c2a03f025093100e3717a7aee17b404893940", + "language": "MATLAB", + "lines": 114, + "truncated": false, + "block": 9, + "row": 4780 + }, + { + "path": "config/nk_GetAnalModalInfo_config.m", + "sha256": "9d7d49a8e42fd09cb937491eee64ad7c68c125c5403c60749af2ea627dba3b0d", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4117 + }, + { + "path": "config/nk_Gflip_config.m", + "sha256": "0b6b39f2f9f5b92912e8ad92c30aa0697d62d55d4c9bf44f32e45cc67a3e45fe", + "language": "MATLAB", + "lines": 126, + "truncated": false, + "block": 9, + "row": 5014 + }, + { + "path": "config/nk_GreedySearch_config.m", + "sha256": "e397b421f2562f6ef2d149d3f5dad413db409ddfad091399ecb3ba1479a05d32", + "language": "MATLAB", + "lines": 196, + "truncated": false, + "block": 9, + "row": 5470 + }, + { + "path": "config/nk_Grid_config.m", + "sha256": "4b19b99b6c8afd3d2a855e7a3c219c01b475085fadc00f8c632a1e0d56afeac6", + "language": "MATLAB", + "lines": 774, + "truncated": false, + "block": 9, + "row": 5964 + }, + { + "path": "config/nk_GroupNorm_config.m", + "sha256": "d86db3d26aba76e21865eac91afdfedc79392d38ffd7ffdb0aa28ab12195367c", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3841 + }, + { + "path": "config/nk_IMRelief_config.m", + "sha256": "68e0cb47c1a2dc811f6a5486ae10511f1697a8936b7a39422add6ee7516bc2aa", + "language": "MATLAB", + "lines": 115, + "truncated": false, + "block": 9, + "row": 4795 + }, + { + "path": "config/nk_Impute_config.m", + "sha256": "aaf48ac515b794da1791fee6c107083ad371e17001bbd1fc75eb2029022b4759", + "language": "MATLAB", + "lines": 160, + "truncated": false, + "block": 9, + "row": 5425 + }, + { + "path": "config/nk_Kernel_config.m", + "sha256": "6b12ce4e1419a02ff28c8977d43c9b2dbd5355f1abe7dde4a1332f61743b2852", + "language": "MATLAB", + "lines": 181, + "truncated": false, + "block": 9, + "row": 5304 + }, + { + "path": "config/nk_LIBLIN_config.m", + "sha256": "f4446f1c0ecd2795e889eb808281a0913199062a3b66747d7a93d14b135a873f", + "language": "MATLAB", + "lines": 214, + "truncated": false, + "block": 9, + "row": 5368 + }, + { + "path": "config/nk_LIBSVM_config.m", + "sha256": "0e260bb67b4dad49c6c45cbfd55fd7dc86daaa9ec7de9addc6575d7f33c765b3", + "language": "MATLAB", + "lines": 282, + "truncated": false, + "block": 9, + "row": 5518 + }, + { + "path": "config/nk_LabelImpute_config.m", + "sha256": "38ee4bf0745908dc995a5bfea8673d62e8dfad5ed233b0ccbd686eb85ae48e3a", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 9, + "row": 4707 + }, + { + "path": "config/nk_LabelMod_config.m", + "sha256": "074988814dd91c2345cfcce75ffbf934a9eaae5f83e61a680db1f687dc7e89f6", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 4062 + }, + { + "path": "config/nk_MKLRVM_config.m", + "sha256": "27a20b02c079873b3f9dd8bca825298acfbb13bc0dd4126b29e3ef621d4a2441", + "language": "MATLAB", + "lines": 93, + "truncated": false, + "block": 9, + "row": 4790 + }, + { + "path": "config/nk_MLI_config.m", + "sha256": "0789b608506323d39a850b8e7a2070d080a582b5a5f30f11ea4c6ab480b8f081", + "language": "MATLAB", + "lines": 378, + "truncated": false, + "block": 9, + "row": 5711 + }, + { + "path": "config/nk_MRMR_config.m", + "sha256": "48931e9e093a2685e3571df0ddad523509c47a1b8aa138b9fec6406cc992866b", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 9, + "row": 4161 + }, + { + "path": "config/nk_ModelExportPrep.m", + "sha256": "cb34332a0d8a2371e4f5663e86ff3fd5837551865aa0a16abf11cbbc5eca97fe", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 9, + "row": 4292 + }, + { + "path": "config/nk_ModelExport_config.m", + "sha256": "a2b1358b7099c7eadfa29b89c60e46dfb95fdfba61a00c684a47529a6a118c8d", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 9, + "row": 3851 + }, + { + "path": "config/nk_Model_config.m", + "sha256": "dc17dd8672c361c3e24365f1e59453717a2707198bb5a6446e33a95313588c78", + "language": "MATLAB", + "lines": 378, + "truncated": false, + "block": 9, + "row": 5721 + }, + { + "path": "config/nk_Multi_config.m", + "sha256": "c34699c4785211a88cc2e7c96d688f48a8a65e8123b5ddf30868346f895e9435", + "language": "MATLAB", + "lines": 162, + "truncated": false, + "block": 9, + "row": 5253 + }, + { + "path": "config/nk_OOCVDataIO_config.m", + "sha256": "b851ad6980f6b7a53f03b8bf877401e3529c1de81407255fa25bf38fd5c8c697", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 4308 + }, + { + "path": "config/nk_OOCV_config.m", + "sha256": "bf63a3631ecc23bfd009a7feb01f2d22ec1760c727a08e54b8f087cb9989bed6", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 9, + "row": 4636 + }, + { + "path": "config/nk_PFA_config.m", + "sha256": "17e5b9449079d60b0828de161c3857723c55ce40d20b11dbae72ee2aedf402f4", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 9, + "row": 4302 + }, + { + "path": "config/nk_PLS_config.m", + "sha256": "1d7d722f81558b01f9e87ce4f9be2c337166a0713776ac055f257a708119ea17", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 9, + "row": 4704 + }, + { + "path": "config/nk_PSO_config.m", + "sha256": "9e43589c9c17e87e06ceab322976e33f58e8a5c97760b981bb17291169942bc6", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 9, + "row": 4573 + }, + { + "path": "config/nk_PartialCorrelations2_config.m", + "sha256": "3a091b358249f0c42227ce8d1f1e46e5c87c35a1ae1447ce68ed7e08712a3912", + "language": "MATLAB", + "lines": 189, + "truncated": false, + "block": 9, + "row": 5375 + }, + { + "path": "config/nk_PartialCorrelations_config.m", + "sha256": "fc6d284ac3501fff8f4d23dde3894c965e3f20fbe0019f1c7369141027888621", + "language": "MATLAB", + "lines": 187, + "truncated": false, + "block": 9, + "row": 5372 + }, + { + "path": "config/nk_PolyKernel_config.m", + "sha256": "1a5f764d6a194ab4ee57aba11116052fe87c006c9c517cef094fe9e18246f269", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 3039 + }, + { + "path": "config/nk_Preproc_config.m", + "sha256": "1aa5a92187cdb42b1760abc66a07a3f46f7e0a8394f0b3717093d28c67540ee3", + "language": "MATLAB", + "lines": 996, + "truncated": false, + "block": 9, + "row": 5931 + }, + { + "path": "config/nk_Preprocess_StrCfg.m", + "sha256": "4b33045c1259e2e80d77784362159595d634f5fd3c8d48c8c78ffece0ebd7e0d", + "language": "MATLAB", + "lines": 136, + "truncated": false, + "block": 9, + "row": 5072 + }, + { + "path": "config/nk_ProbalisticFea_config.m", + "sha256": "f0a5c2a444a75f80cbe32d68ce53243d2b1d86d003e3db59a4926412c533ceca", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 4916 + }, + { + "path": "config/nk_Prune_config.m", + "sha256": "fd4b36c1d72991b301a566c3389992c6b2f6deed93bfebba7a8da76425d50f07", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 9, + "row": 4459 + }, + { + "path": "config/nk_RFE_config.m", + "sha256": "379623b92c6f184be739f2a6468552b098af3860bff515d77b039b8556c4aa2c", + "language": "MATLAB", + "lines": 154, + "truncated": false, + "block": 9, + "row": 5289 + }, + { + "path": "config/nk_RGS_config.m", + "sha256": "b719d6bb993150d96557f0dc7cb67fd2c1531a46e887f93cfaa84cdd38ba84ea", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4630 + }, + { + "path": "config/nk_ROBSVM_config.m", + "sha256": "9da5fd172c67077c994cd9f26d390eca5d06caf853f067d8d96e9dcea9c17e35", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 4526 + }, + { + "path": "config/nk_RSS_config.m", + "sha256": "1a10c2bdeb808b4e8c94edb79f85a605b365cb8d294f6c77691b051fc0613576", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 4145 + }, + { + "path": "config/nk_Rank_config.m", + "sha256": "34ffbf2e635d54fa42c2fe61f62c25bb45d36c3614dc3a18363d84d105a58789", + "language": "MATLAB", + "lines": 367, + "truncated": false, + "block": 9, + "row": 5770 + }, + { + "path": "config/nk_RegulFunc_config.m", + "sha256": "0911b66d9ab1ceca35f7fc739686705be4fb410199d9a427b51e9df4710758d5", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 3721 + }, + { + "path": "config/nk_Remvarcomp_config.m", + "sha256": "29a976b4c35d8fdbd01a781b835cdb1a1970e805feee3d51ab29337bd200f513", + "language": "MATLAB", + "lines": 129, + "truncated": false, + "block": 9, + "row": 5250 + }, + { + "path": "config/nk_SA_config.m", + "sha256": "45ee4a797af51ecf1d0e614dc73371d8a3f6fc166df3e3010b9fceef886df73d", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4661 + }, + { + "path": "config/nk_SEQOPT_config.m", + "sha256": "a82b19de147e9fa37a3ecc227ca3ccfd2c5b062d851cc881906c0ad7bb38feef", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 9, + "row": 4634 + }, + { + "path": "config/nk_SVM_config.m", + "sha256": "4eb60fd94a88d3613fc585087d54a4f665d4cc9435f16a877afdd27ab351efd5", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 3884 + }, + { + "path": "config/nk_SavingOptions_config.m", + "sha256": "9949d98515e834f6007708cd9615a6a9cdcefe343d900568b74c5b978f4dc2ed", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3982 + }, + { + "path": "config/nk_Scale_config.m", + "sha256": "3dc6d5e63279c90237eb9e1bb214758aa1b915609d5545aba2dbe3cc08d2b09b", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 9, + "row": 4263 + }, + { + "path": "config/nk_SetupIMReliefParams_config.m", + "sha256": "1c5defe520bff196f83e1f707503ec7cc7d1f4be94e76a7ea1b6c8e4b8466703", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 4010 + }, + { + "path": "config/nk_Simba_config.m", + "sha256": "2eff198f3d0da6c513ef1d79fa0cdc08701b089b14f04c02c6dfab7fe9b8f9e5", + "language": "MATLAB", + "lines": 135, + "truncated": false, + "block": 9, + "row": 5156 + }, + { + "path": "config/nk_Simba_config_old.m", + "sha256": "84bab9c65f16f12b36fade5602bac966acad2d7db41f85e77a42b7db41f7d52e", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3912 + }, + { + "path": "config/nk_SpatialOP_config.m", + "sha256": "a1c8e158955e29c6b5d7d4c1eb40676cfe7dc7d6b6b0a3605d456cccac368c59", + "language": "MATLAB", + "lines": 314, + "truncated": false, + "block": 9, + "row": 5584 + }, + { + "path": "config/nk_Spatial_config.m", + "sha256": "4d269f163867d366dd4aa11c051c608070902e55a36a9d7a17c51cc844571316", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4619 + }, + { + "path": "config/nk_Stacking_config.m", + "sha256": "1e7e5f44d8983faa63e2acb9f0ad9b3d10030e447e6f18e2dec4298114f41811", + "language": "MATLAB", + "lines": 167, + "truncated": false, + "block": 9, + "row": 5332 + }, + { + "path": "config/nk_Standardize_config.m", + "sha256": "81132118d30c0e28bac1997203ecda577e54d27b5f60041ad984049ad6275ec4", + "language": "MATLAB", + "lines": 150, + "truncated": false, + "block": 9, + "row": 5231 + }, + { + "path": "config/nk_SubSpaceStrategy_config.m", + "sha256": "76df598cda49f83907569327402453528c35972e411dc99373e275e0daca45db", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 9, + "row": 4295 + }, + { + "path": "config/nk_SubgroupOperation_config.m", + "sha256": "f58ec22c33fa402b6d46a8e0d48f35d86e4c6c2a86945d88efca5a83534143b5", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3900 + }, + { + "path": "config/nk_Synth_config.m", + "sha256": "f6d8340bc77e152ebc0b2c46ead1f53f96e1decae4bc7b9e905fdc6fc2efd42e", + "language": "MATLAB", + "lines": 110, + "truncated": false, + "block": 9, + "row": 5196 + }, + { + "path": "config/nk_TrainClass_config.m", + "sha256": "aecb0ff80ed5b6ecb854c5599cdde051a022475a787ff0cea323a68018748716", + "language": "MATLAB", + "lines": 721, + "truncated": false, + "block": 9, + "row": 5905 + }, + { + "path": "config/nk_Unitnorm_config.m", + "sha256": "796bff611989f2ba2bc152ee88350bf67eadb47d1861444e3ad88a637841a457", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4050 + }, + { + "path": "config/nk_Vis_config.m", + "sha256": "110543c6afd331046aff21c8fe105018c995aebbfee1b402721109bb50a1461a", + "language": "MATLAB", + "lines": 227, + "truncated": false, + "block": 9, + "row": 5464 + }, + { + "path": "config/nk_WAction_config.m", + "sha256": "30afd7e04439b0cf0dc92b67c2a2068fb3d573af0ebb99f9bdfe9a4be3ed500c", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4708 + }, + { + "path": "config/nk_WBLCOX_config.m", + "sha256": "a02c28df2c009a6a934a289c3f4ce48fbc0bbaec16591a8ad39a550c38aab3de", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 9, + "row": 4692 + }, + { + "path": "config/nk_Wrapper_config.m", + "sha256": "36c73b5ca5e9afce62e3c1d164bfb86b20090ee1073514f4ca5e0790ccf5a36c", + "language": "MATLAB", + "lines": 140, + "truncated": false, + "block": 9, + "row": 5316 + }, + { + "path": "config/nk_matLearn_BuildMenu_config.m", + "sha256": "9db7101fbb7a06f76acd36577f452aec875c48d7b615e5e46616982624d3fd9e", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 9, + "row": 4605 + }, + { + "path": "config/nk_matLearn_DefAlgoParams_config.m", + "sha256": "e0c80d0d167c69ca6859a4a2620810bbb2dea973fcf226754939dd9c3f8a52f0", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 4160 + }, + { + "path": "config/nk_matLearn_FindDefInParam_config.m", + "sha256": "8a8118cc7511555f3b29a2c81ccb50e94dd3f568ef3393de7bb5ad04667dba03", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3335 + }, + { + "path": "config/nk_matLearn_IO_config.m", + "sha256": "91bf78cd72ecddc922f8bddc1c4beac22667641228a2851daf65ec3e178c7745", + "language": "MATLAB", + "lines": 108, + "truncated": false, + "block": 9, + "row": 4946 + }, + { + "path": "config/nk_matLearn_config.m", + "sha256": "f787f2ca07c5bf740d21cc36dc95e5ec19a48638559147203993688123f465c4", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 9, + "row": 4255 + }, + { + "path": "config/nk_matLearn_getopts_config.m", + "sha256": "369e0b78c59f3311f8613c50c31188a65dbeaaaadfa0d16792c1388394b011b2", + "language": "MATLAB", + "lines": 376, + "truncated": false, + "block": 9, + "row": 5792 + }, + { + "path": "cv_ExportModels.m", + "sha256": "977369979a7fe21beedf50a0b9159ec749ab6f6d97256426b32f829e4b4d0008", + "language": "MATLAB", + "lines": 200, + "truncated": false, + "block": 9, + "row": 5456 + }, + { + "path": "cv_ExportModelsPrep.m", + "sha256": "d34301517f3c4e014a597898989d3dc72a245300fb3841afd77ef04a5b617af7", + "language": "MATLAB", + "lines": 253, + "truncated": false, + "block": 9, + "row": 5525 + }, + { + "path": "ensemble/nk_Ambiguity.m", + "sha256": "c36bfbcd91329ed0ccfb17a8ca4f7847ed6faf57a8a5fb50fceaf77d204f9a50", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 9, + "row": 3266 + }, + { + "path": "ensemble/nk_BuildEnsemble.m", + "sha256": "19b0d361b614e830405770cd99060663dafab9844b107b88b8a8396402b52b83", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3502 + }, + { + "path": "ensemble/nk_CVMax.m", + "sha256": "a452c9b1c01d262ed10d14680bc3dab7c4bca3dee14819604c4b0584a7538012", + "language": "MATLAB", + "lines": 179, + "truncated": false, + "block": 9, + "row": 5225 + }, + { + "path": "ensemble/nk_Diversity.m", + "sha256": "0f941179abe873c42686be25af1b3c7ddb9b06c91c91ddcd3d15d3efa8dfeffe", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 9, + "row": 3271 + }, + { + "path": "ensemble/nk_DiversityKappa.m", + "sha256": "b3f3b5c03990df1795602fb6305b141a2ecef0e28357b7a0bca7bbc751383648", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3143 + }, + { + "path": "ensemble/nk_DiversityMax.m", + "sha256": "ee6b05d17bd6db6a989d8c5c9e81518d269211fa2e4fc819e165e022eaa4d92d", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 9, + "row": 4623 + }, + { + "path": "ensemble/nk_EDMin.m", + "sha256": "8f2e836d0087d565c7281784945fe0f5052d19fb5cb85ae60fe2f17f21d01c44", + "language": "MATLAB", + "lines": 110, + "truncated": false, + "block": 9, + "row": 4613 + }, + { + "path": "ensemble/nk_EnsPerf.m", + "sha256": "e88c7fbd5e1743b27119c0d484054fd8aa19911e3733f055bd851adddcc3294e", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3144 + }, + { + "path": "ensemble/nk_EntropMax.m", + "sha256": "9d1bead296e6c4c30399eda5b2a91fa11b2549ec77ffab5ee712aeb6ef4815fd", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 9, + "row": 4620 + }, + { + "path": "ensemble/nk_Entropy.m", + "sha256": "8a66e19911cc68a057aa70bc2cc0d0d9063fb01b144d6c012362401420de9b12", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3672 + }, + { + "path": "ensemble/nk_FilterCVMax.m", + "sha256": "1f74f77b532cf056a832731553798a5721e658d55062e13d2329d3b811d0c530", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3062 + }, + { + "path": "ensemble/nk_Lobag.m", + "sha256": "a81cff7a4eaeb6b3ec9ea4863028e127d9bb4a648ee470e3df9306db55bafb5b", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3709 + }, + { + "path": "ensemble/nk_LobagMulti.m", + "sha256": "bf128a1ff81f2832fa3402caec6e631f0fa9b94f5a7da2367a89ad3190676552", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3296 + }, + { + "path": "ensemble/nk_MultiCVMax.m", + "sha256": "408f6ebeac152b82684a9d53dbe0bf52069fba8cbbd2cdab51e9daace648afe6", + "language": "MATLAB", + "lines": 220, + "truncated": false, + "block": 9, + "row": 5414 + }, + { + "path": "ensemble/nk_MultiDiversityMax.m", + "sha256": "706abae16cf83984173356da1ea426403d3dc13e2428bf28495681b6573d7073", + "language": "MATLAB", + "lines": 162, + "truncated": false, + "block": 9, + "row": 5028 + }, + { + "path": "ensemble/nk_MultiEDMin.m", + "sha256": "addfe8ad7e2c52e2e4016bdaf19c267854173c3ba31066f081fe144084436eaa", + "language": "MATLAB", + "lines": 177, + "truncated": false, + "block": 9, + "row": 5169 + }, + { + "path": "ensemble/nk_MultiEnsPerf.m", + "sha256": "11c30c76eec8e0d97dff8fbbf5d7cd37cc541fbfc0f0e8fef2b32db1ff0114d7", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3506 + }, + { + "path": "ensemble/nk_MultiEntropMax.m", + "sha256": "284ac7795bd5139364c20594286deac24cd6d5b0adb676ca5e7b0f50d1daf696", + "language": "MATLAB", + "lines": 162, + "truncated": false, + "block": 9, + "row": 5018 + }, + { + "path": "ensemble/nk_RegAmbig.m", + "sha256": "cf2e0b5b475f3d329a02d98b1e1bcaed15d09d6894258ab9be2b4acdb77ceea6", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3586 + }, + { + "path": "ensemble/nk_SignBasedConsistency.m", + "sha256": "e07c25cd9ed211b7e47f55f56b1d98423700bc5e0c1d90c7b165f43d8a26fe1a", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3280 + }, + { + "path": "ensemble/nk_SignBasedConsistencySignificance.m", + "sha256": "4bb14fb999761631228a852673d43867962cd051aa995074b9f691bb95135384", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3211 + }, + { + "path": "ensemble/nk_ThrowCoin.m", + "sha256": "96f0ec7aeb07c16cf1e7643b1b6e13a15354d1889680c04e7dc3307d69ab4ae2", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 2983 + }, + { + "path": "genID.m", + "sha256": "1f6408908da6f39218f9097d9c19aaa3391b7c68691ab5bf00c95d85448ce790", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 2960 + }, + { + "path": "getAlgoStr.m", + "sha256": "8f9e28ee17d684ff28a763463e910fa9bd0902049f749e62418a6606a3532c32", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 9, + "row": 2998 + }, + { + "path": "getD.m", + "sha256": "1f7ad0d79d757aee17b3f3c490b84bf928811c5b60218145fefaf6f4c5e0113c", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3892 + }, + { + "path": "getModelNumDim.m", + "sha256": "25cd73c3bb4c55ad9fd82756e68d7ea53bedb0d4cb6e7f5a839480b6f95306db", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3035 + }, + { + "path": "getNMcolors.m", + "sha256": "cfbf38d60c8deb896f34aaaf0793f43ad25b1460f4bba34d4885839ec6c3c103", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3368 + }, + { + "path": "graphs/apply_sparsity_thres2.m", + "sha256": "07d4b971f8e9c5c0f8691e9f1eb1122628ec86fa9ba62527963faa05ea8101aa", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 9, + "row": 2994 + }, + { + "path": "graphs/graph_kernels/labeled/RGkernel.m", + "sha256": "59be8f72c001a16de6d6c69386974a45b4df7a8ba7807082c633a9f9f4375c2d", + "language": "MATLAB", + "lines": 124, + "truncated": false, + "block": 9, + "row": 5104 + }, + { + "path": "graphs/graph_kernels/labeled/WL.m", + "sha256": "ce8272a313e817103f3d25a33b8a2f88b5f0752cf10082857f9857ed52ab7510", + "language": "MATLAB", + "lines": 138, + "truncated": false, + "block": 9, + "row": 5076 + }, + { + "path": "graphs/graph_kernels/labeled/WLedge.m", + "sha256": "b650dc1b8fca6d60b4935b70ffb38a9aaf2536fdec7cef026bd9a2160abfed71", + "language": "MATLAB", + "lines": 166, + "truncated": false, + "block": 9, + "row": 5221 + }, + { + "path": "graphs/graph_kernels/labeled/WLspdelta.m", + "sha256": "cea60b55404a28f0802d21de71260cc9af47515215075732f025f28a3b17807b", + "language": "MATLAB", + "lines": 221, + "truncated": false, + "block": 9, + "row": 5377 + }, + { + "path": "graphs/graph_kernels/labeled/floydwarshall.m", + "sha256": "8fac682814f234e9c4f3471047e2a5ab63adf105264e7071240228146248e73a", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3616 + }, + { + "path": "graphs/graph_kernels/labeled/l3graphletkernel.m", + "sha256": "abda53b3fd1b2bf25ee7742b9a9db3b6fb7cdd28fd82e2b000c201aa5f34159a", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 4414 + }, + { + "path": "graphs/graph_kernels/labeled/lRWkernel.m", + "sha256": "1759139c6561652405af053cde8cb6c13b4b223f7ae740ad0020a8897619c349", + "language": "MATLAB", + "lines": 137, + "truncated": false, + "block": 9, + "row": 4879 + }, + { + "path": "graphs/graph_kernels/labeled/spkernel.m", + "sha256": "524caf63037e41e1f38baed9770659304847c2896e98cb2cf43c5a7263a66a31", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 9, + "row": 4334 + }, + { + "path": "graphs/graph_kernels/labeled/untilpRWkernel.m", + "sha256": "77e42c25043ee02140abb1d50685cfc49ae61d0b65d9ce510a1e1590fe765d1c", + "language": "MATLAB", + "lines": 137, + "truncated": false, + "block": 9, + "row": 4958 + }, + { + "path": "graphs/graph_kernels/svm/normalizekm.m", + "sha256": "0a2cbab92c5a4e2738cdd1feaf2591a359c594c9a400ec939590c24ae6452e08", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3195 + }, + { + "path": "graphs/graph_kernels/svm/runIndependent.m", + "sha256": "f4ee7ff98103fd8b3099468c88a401d60d5fab3d60e8a0470512d2a4d1282767", + "language": "MATLAB", + "lines": 122, + "truncated": false, + "block": 9, + "row": 4536 + }, + { + "path": "graphs/graph_kernels/svm/runmultiplesvm.m", + "sha256": "be2b8509d1b947ac92143d9597810b0bd92e9081afa64f84d59e582c47bf0257", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 9, + "row": 3386 + }, + { + "path": "graphs/graph_kernels/svm/runntimes.m", + "sha256": "9cbd4a74821a98ec6bab8fe96c01cd91b183cb69d6feedea9ef3bb9702c002e1", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3383 + }, + { + "path": "graphs/graph_kernels/svm/runsvm.m", + "sha256": "ccb5f5238352552b709c5cca003e5893583350e5e17ce4ba30a6e1c117339d04", + "language": "MATLAB", + "lines": 101, + "truncated": false, + "block": 9, + "row": 4511 + }, + { + "path": "graphs/graph_kernels/unlabeled/RWkernel.m", + "sha256": "ac870b743e7023ab1498cbbbed3157aa751fd0c1fc0160d5b7f1c033ce6ea638", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 9, + "row": 3976 + }, + { + "path": "graphs/graph_kernels/unlabeled/SPkernel.m", + "sha256": "dc331afb495d79ce7750b66f99745527633c6f41a651ecb71c7734e7a7e7f37e", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 4086 + }, + { + "path": "graphs/graph_kernels/unlabeled/allgraphlets/allkernel.m", + "sha256": "5c058baf25711bcc96c258b56aa7f37dd7ddfa1c3de5f7f36d474ca895ac0fed", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3590 + }, + { + "path": "graphs/graph_kernels/unlabeled/allgraphlets/card_3inter.m", + "sha256": "8bf29dcf85f8548ab3da71874a1c5f888165aceda0e861e277560cf4d146d028", + "language": "MATLAB", + "lines": 131, + "truncated": false, + "block": 9, + "row": 4426 + }, + { + "path": "graphs/graph_kernels/unlabeled/allgraphlets/countall3graphlets.m", + "sha256": "43a484b5fbc7c19bbe25586e6a36e218c163565dd3c0aad087f0e411439459b9", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3829 + }, + { + "path": "graphs/graph_kernels/unlabeled/allgraphlets/countall4graphlets.m", + "sha256": "10dafa4ac397dcd5220228e9c0a087b87433f1cc907d2749558f6c48b89b91ee", + "language": "MATLAB", + "lines": 121, + "truncated": false, + "block": 9, + "row": 4965 + }, + { + "path": "graphs/graph_kernels/unlabeled/connectedgraphlets/connectedkernel.m", + "sha256": "e3e41e8ebff6435915256b8776d116e726b6c15410cd94dafd5dfc36f25c53bb", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 3825 + }, + { + "path": "graphs/graph_kernels/unlabeled/connectedgraphlets/countconnected3graphlets.m", + "sha256": "7776ced434771c27d3fdb4828a2f373510bb5a5c0e38c98a841e74f09839fc3f", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3607 + }, + { + "path": "graphs/graph_kernels/unlabeled/connectedgraphlets/countconnected4graphlets.m", + "sha256": "bb64a0637738efed340c94600ad1264e96dba06044c7489fa795411ed1ebd21f", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 9, + "row": 4378 + }, + { + "path": "graphs/graph_kernels/unlabeled/connectedgraphlets/countconnected5graphlets.m", + "sha256": "aec1a7087e9c8abdca1dfb6fa5963fb78f4065970f9446bf4cc8cc44bd682056", + "language": "MATLAB", + "lines": 189, + "truncated": false, + "block": 9, + "row": 5452 + }, + { + "path": "graphs/graph_kernels/unlabeled/floydwarshall.m", + "sha256": "8fac682814f234e9c4f3471047e2a5ab63adf105264e7071240228146248e73a", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3616 + }, + { + "path": "graphs/graph_kernels/unlabeled/samplinggraphlets/Permutationmatrix3.m", + "sha256": "d2fc330c4d1d1cadde262bfee1f5cdeb9167722b702d681a76647e50c3f1171b", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3201 + }, + { + "path": "graphs/graph_kernels/unlabeled/samplinggraphlets/Permutationmatrix4.m", + "sha256": "70398640db8414ec3904f0650d6f348bc594d9f767f1f505a761810239b559f7", + "language": "MATLAB", + "lines": 103, + "truncated": false, + "block": 9, + "row": 4518 + }, + { + "path": "graphs/graph_kernels/unlabeled/samplinggraphlets/Permutationmatrix5.m", + "sha256": "122e9ae0d3dab5227e450eca0bcea8646ab27ad029c7a554013ba8b2fa0c8aef", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 9, + "row": 3406 + }, + { + "path": "graphs/graph_kernels/unlabeled/samplinggraphlets/gestkernel3.m", + "sha256": "bcf5bd2ccba73cff7e8ccd8c5ee4f1619a92c73f5d98e51807929dfee603e9df", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 4006 + }, + { + "path": "graphs/graph_kernels/unlabeled/samplinggraphlets/gestkernel4.m", + "sha256": "f066573112da20c1e36e68475e2d8171f5abe519b52ef7afd79dc2ab73ac1443", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 9, + "row": 4165 + }, + { + "path": "graphs/graph_kernels/unlabeled/samplinggraphlets/gestkernel5.m", + "sha256": "ab4755279b0481e3930c97fdd4c4aa1437947a77c2bbb044985f8a84208c932f", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 9, + "row": 4141 + }, + { + "path": "graphs/graph_kernels/unlabeled/samplinggraphlets/samplesize.m", + "sha256": "4b9ff8e09580ce8574172521d581ce89e458acdf52de52f8178d74312dc1e322", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3078 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/adjacency_plot_und.m", + "sha256": "33929b8260774a3fd5089af7d4569dff3cdb1794ef4da84054ef1e8bc3947035", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 9, + "row": 3973 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/agreement.m", + "sha256": "f1bf55f2d30da22fcd7c4bd9fd4720e8dc4db2a2853de2053fdd7590f65e507a", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 9, + "row": 4071 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/agreement_weighted.m", + "sha256": "67b690da34af7a6ef5e9507370b91eec7ef5fe8fbbe542129f8aebe056084c4e", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3650 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/align_matrices.m", + "sha256": "0658ac8b032cf640f563739934dbcfc225fd78e507f4555de578373bfdb39cbf", + "language": "MATLAB", + "lines": 135, + "truncated": false, + "block": 1, + "row": 3644 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/assortativity_bin.m", + "sha256": "be9ae98f18d1a478c0fcf064af163a706b78aa0f744302d32e2458fa62d8d6ea", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 1, + "row": 3175 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/assortativity_wei.m", + "sha256": "a5b289413c7c2e329510a5fd078d1feaa1f0ed756f52900f1a794d098f5b9334", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 1, + "row": 3162 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/backbone_wu.m", + "sha256": "927a9022fc98e0d1e414f06acc71c450c4db3fb6a0ca8757b6a61b9c144bf811", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 1, + "row": 3172 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/betweenness_bin.m", + "sha256": "5d39f627576791ca5f2c15b223ae3e3757f3b35a5a127dfc4ecef629ee7c26cb", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 9, + "row": 4127 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/betweenness_wei.m", + "sha256": "10efa0ff1cb4cbd9d38e290008842c90be6af85cb0063131b796c16457d1ced1", + "language": "MATLAB", + "lines": 76, + "truncated": false, + "block": 9, + "row": 4533 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/breadth.m", + "sha256": "1f9f88b8976cbc2f9fe6f1303fd4c8418436b645f2f2626ceb724f47b5ca3479", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 9, + "row": 4102 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/breadthdist.m", + "sha256": "bd4dc94aa1fe9303982dae56dee3874c9df668cbc3b4370b7291a7c66a1b49d5", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 1, + "row": 2788 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/charpath.m", + "sha256": "932e6a2e498fc9300958d935141761781c1627a0a6ff5af3b9a15bec7b69bd6b", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 1, + "row": 3377 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/clique_communities.m", + "sha256": "68ec84b5dfcaed54c1d23eeca686c3420a84a7740b46a48b3c05cc2051be679a", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 9, + "row": 4622 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/clustering_coef_bd.m", + "sha256": "89523110ee7a6b4c36e9d1af9f9c004dceef0bba1960852ad2508d268293bee4", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3930 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/clustering_coef_bu.m", + "sha256": "2b167bb0fb778d6395b766ab93be5fe60808527dffb9ff489b6680a379f1e75a", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3426 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/clustering_coef_wd.m", + "sha256": "548ba3c7ff0fa96e7383b11b078a84e640e644303a82494fc5f6d3a41f0e889e", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 9, + "row": 4016 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/clustering_coef_wu.m", + "sha256": "a5c916efe30dd8ed21daf51b6c6355f9db800e483ee867ec2833f6b5c5a478f7", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3645 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/clustering_coef_wu_sign.m", + "sha256": "9817a440ca551da749cb92f2218bf7bd9daf5b14f8384cbb26e61a5ec507b396", + "language": "MATLAB", + "lines": 136, + "truncated": false, + "block": 9, + "row": 5165 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/community_louvain.m", + "sha256": "a230b69bb01db03ac48b6a273d93b76574ff0326978e003f77c265c311961260", + "language": "MATLAB", + "lines": 198, + "truncated": false, + "block": 1, + "row": 3909 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/consensus_und.m", + "sha256": "217f73705d6a9ec34039b67c6dcb18a01266cb6c51b3a2d72501880d7ab77f1d", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 1, + "row": 3361 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/core_periphery_dir.m", + "sha256": "bd6fbe4a62f53aa4c19167d3f7f3f894cb032773d443cf0431992934526b26a4", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 1, + "row": 3430 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/cycprob.m", + "sha256": "0916d7e03ab5e61508dfdd71ab37aa9dc27a51c13a6ced31b94eb92a0bce0e6c", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 1, + "row": 2980 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/data_and_demos/demo_efficiency_measures.m", + "sha256": "44b8e5383e52bc2332b1011cf00cc5246a55f1d3d451ab9ed59c000e578f04fc", + "language": "MATLAB", + "lines": 116, + "truncated": false, + "block": 1, + "row": 3490 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/data_and_demos/demo_generative_models_geometric.m", + "sha256": "5148472918533998ae82d90c49d5fc755682819337a37f6fffadd9244a6aa264", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 1, + "row": 2854 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/data_and_demos/demo_generative_models_neighbors.m", + "sha256": "730bfb6ef272a2c446bd236bdfca3389b7d5f643fad69a85b66f2a8bc729304e", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 1, + "row": 2885 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/degrees_dir.m", + "sha256": "d8f173b67f2c2b0a140835872319160c6130ae924e460342a5ea466ef5c93951", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 1, + "row": 2713 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/degrees_und.m", + "sha256": "c43b0aed271a26f574ea70a4d8bfd59e204e2ff34a8030966ac72ac4e433260b", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 1, + "row": 2472 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/density_dir.m", + "sha256": "9ba1f96e6e49517740fa64ff06fea4e3c4b817918affcd445366dd13992ddf37", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 1, + "row": 2566 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/density_und.m", + "sha256": "b5eaaec9177fab93554aaa837a5c9444e3127f315616928b5246d4f420e53bb7", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2621 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/diffusion_efficiency.m", + "sha256": "396b68160bd546744a6c8a9f25e0253becaf33cb97ecb72f46974f43fc3bd25b", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3717 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/distance_bin.m", + "sha256": "0d3eef9a7b5e9182f723954ecf8f9b17799778e5755a2cc6db7fce2abb74c2c1", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 6, + "row": 7610 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/distance_wei.m", + "sha256": "4072a23151118b15ed262b7c037d24ec032e1905afd8f2ed45ad6f725e1732ae", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 9, + "row": 4558 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/distance_wei_floyd.m", + "sha256": "309b4100c36ed9fbeb9be9e81dcd9e744c3d2f4ac3269f8f3ab469851701d35d", + "language": "MATLAB", + "lines": 121, + "truncated": false, + "block": 1, + "row": 3453 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/diversity_coef_sign.m", + "sha256": "600115eb33dcfd4e1ccc87da28388f69bf74ac9bffe343bb88da3ef5433bf624", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 4040 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/edge_betweenness_bin.m", + "sha256": "2d4eec934fc889dfef526f947fa20e586d44408c89de6b6bf029ad3fff3d749e", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 9, + "row": 4335 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/edge_betweenness_wei.m", + "sha256": "a7a39bfbc8509a434d8b3d311e690d01e67130ee62d7ddd4a193b614d5f38bfa", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 4609 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/edge_nei_overlap_bd.m", + "sha256": "6c73ce862538f97a49aecebd8f762127f7b24a68729f194df6f347004bfbc90e", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 4100 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/edge_nei_overlap_bu.m", + "sha256": "06bbac1c5d88e460899d91afc2aef9796677e341e011374d0af33a94af753c4c", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 4052 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/efficiency_bin.m", + "sha256": "571db8d65bfde8b934a5f649e0dc9404274be464ac05de8bda31165a65856db9", + "language": "MATLAB", + "lines": 76, + "truncated": false, + "block": 9, + "row": 4484 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/efficiency_wei.m", + "sha256": "5097d1383a684e54525145340ebba6fe0ad319dccc3ee7054abdb86e143d2e5e", + "language": "MATLAB", + "lines": 136, + "truncated": false, + "block": 9, + "row": 5217 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/eigenvector_centrality_und.m", + "sha256": "977f024aa4a736e6a7ccff031b4f34b0a7a8914a5cb3a3d261895277fba12dce", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3814 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/erange.m", + "sha256": "16536ce0c2accd2fcba0181e4a9bc1301ac307f2936bd77de34a6c674a1a5ec1", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 1, + "row": 2935 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/evaluate_generative_model.m", + "sha256": "254656cb1f278f55ec205406302940e801f7b2490d075c4b21a8cb6ce53f0273", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 1, + "row": 3463 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/find_motif34.m", + "sha256": "266c6eda30b2aef280743062b8e2327252fb4f3f5517751c99bda19dde814975", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 3939 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/findpaths.m", + "sha256": "acce80b128ebe7cde2f51bf79bc79cabf3b4b5989b7452efa8f5a8cd80d7fafd", + "language": "MATLAB", + "lines": 158, + "truncated": false, + "block": 1, + "row": 3727 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/findwalks.m", + "sha256": "9c31c38e104f37a4cbc5567f334e65e2d5813aa0c7d4e93f76b04e7b031f2341", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 1, + "row": 2813 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/flow_coef_bd.m", + "sha256": "806f1f8072655b88191e755d2c275a00db363cd693b6a90cbfd74b6198c77e54", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 1, + "row": 2997 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/gateway_coef_sign.m", + "sha256": "e9d981f4eb907de765a1747740de5ab7a29bff6d569d4eed695892f87ebc22c7", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 1, + "row": 3672 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/generate_fc.m", + "sha256": "35d447f8ee3197a4bc280566dc04871684ccd8dc144b09efac736a60ef2485a2", + "language": "MATLAB", + "lines": 241, + "truncated": false, + "block": 1, + "row": 4016 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/generative_model.m", + "sha256": "bf9197c2b1d6f39f007102b6b2441cfa4a50344f09f96c99b594478c84ca86af", + "language": "MATLAB", + "lines": 897, + "truncated": false, + "block": 1, + "row": 4265 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/get_components.m", + "sha256": "b26e917bdc5daa59d4cef1845bf28a06cdff98be44c03faa87cdd87baee4c81d", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 1, + "row": 3038 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/grid_communities.m", + "sha256": "d5a89816266865471564e6d0e212f5c56d372ad6a8de852e1abb57567349e672", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 4000 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/gtom.m", + "sha256": "c54e50f46f93d95c933f289ad5da4e2f305b90ee4a8d43bf8eef085c94a87ff5", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 1, + "row": 3270 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/jdegree.m", + "sha256": "0dbad4f5f41e4644df277cdae2a76ab25b2179c1e103fe9e2b0133f88c13dcd2", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 1, + "row": 2946 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/kcore_bd.m", + "sha256": "b61d5c1ca0e0d3786b2287bcf3a7f6e5f68a2292c250940a84d8105efc7bd1fb", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 1, + "row": 3053 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/kcore_bu.m", + "sha256": "5b7bb429320ea94fadd63ffc0446be88fabea3bddef08820d2f7606d23e132a7", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 1, + "row": 3047 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/kcoreness_centrality_bd.m", + "sha256": "3a7050258e5437793e69365f6a266b104f086ffaa817e77a187505dd465a049f", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3579 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/kcoreness_centrality_bu.m", + "sha256": "2d9613f08631e0458e124ff0f29f208f14d46c207c64348ec69c5ff7e8002b71", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3705 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/latmio_dir.m", + "sha256": "118933d0f727eb9b1fff8e12c3da0d2c982f8165dca5b29188b7ebc9b20636ed", + "language": "MATLAB", + "lines": 91, + "truncated": false, + "block": 9, + "row": 4516 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/latmio_dir_connected.m", + "sha256": "7cb802339868e9205dfe987b95c0accc883248677d955df83e6a226b81c3315c", + "language": "MATLAB", + "lines": 119, + "truncated": false, + "block": 9, + "row": 4863 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/latmio_und.m", + "sha256": "054d0a8e847ee152efdd890ab6be13c759c4ea2bd3ad2e61837510436a9df080", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 1, + "row": 3442 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/latmio_und_connected.m", + "sha256": "576ab31a5615c58efbeca2f5323914fb55a2398d57c650ea46003873285d92c1", + "language": "MATLAB", + "lines": 136, + "truncated": false, + "block": 1, + "row": 3609 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/link_communities.m", + "sha256": "5c8f65224d00f2e94c8c4fa8a426f6b84ad4c97acf2f882c4b29c358925f14c7", + "language": "MATLAB", + "lines": 150, + "truncated": false, + "block": 1, + "row": 3797 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/local_assortativity_wu_sign.m", + "sha256": "59d0390078faf166b0561ee74bb3dce3f334bbd7b552f9414c49fc4316cab031", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 1, + "row": 3032 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/make_motif34lib.m", + "sha256": "acfd5b445348d2a277c5fac9897e287b80db038b24392b8106bbb1d853e03787", + "language": "MATLAB", + "lines": 90, + "truncated": false, + "block": 9, + "row": 4528 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/makeevenCIJ.m", + "sha256": "760969ebb96fcacfab5c7fde4e2ba9ec329207c6c82d397e969383aa82a561f8", + "language": "MATLAB", + "lines": 75, + "truncated": false, + "block": 1, + "row": 3085 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/makefractalCIJ.m", + "sha256": "6a16eae64490b6016f0dcdd48509cca7d127c1fe992e95bc287a058848c3473c", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 1, + "row": 2911 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/makelatticeCIJ.m", + "sha256": "2bb61bcdced8f396913997f47884178b319b5ddcb9575928d42fba5b7806d6fc", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 1, + "row": 2812 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/makerandCIJ_dir.m", + "sha256": "5b243ea9e46f1de9ef0eb981403ef8d6b3360fa307faae2244b6083588698981", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 1, + "row": 2531 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/makerandCIJ_und.m", + "sha256": "dbacc6908a689b400e83f6b29d46504adb6729a25979401fcd7617e86687ac61", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 1, + "row": 2554 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/makerandCIJdegreesfixed.m", + "sha256": "1d9d415aa8f71b35d8b65937f3f4af334c11c9a21e3cfa74409238498e48f5eb", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 9, + "row": 4424 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/makeringlatticeCIJ.m", + "sha256": "e8e008085521f93f4b8e90ed9d06045c1f7d87e341cacf3509286ca7c3505c35", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 1, + "row": 2856 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/maketoeplitzCIJ.m", + "sha256": "653104a5d596967f6e7b967e638ea2d2bc52de373cc6e3e3323506ba93aa6e6c", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2729 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/matching_ind.m", + "sha256": "e237f6e10b0f022181facdd8ad2b2e5d91aafaa2c2c7320ab58d48b4b7a60331", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 1, + "row": 3152 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/matching_ind_und.m", + "sha256": "6b91103178a9c930beaf50ebc4bda5c838bb53ab5dd3b1579d8fc875cd3887fa", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 6, + "row": 6181 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/mean_first_passage_time.m", + "sha256": "ffb5ffd87c206678d7c61d398ce6fc0865607ecb0df30843990d28b369fac12a", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 1, + "row": 3095 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/mleme_constraint_model.m", + "sha256": "48da5148d5658ed6e7d4cf47dbf6fb85d88e1916efd9a58fe4a913ebf5436bcd", + "language": "MATLAB", + "lines": 284, + "truncated": false, + "block": 1, + "row": 3913 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/modularity_dir.m", + "sha256": "10499179d0fb5ddf83c21ef1b62739bd8e2071139554911832193073257cc7d3", + "language": "MATLAB", + "lines": 124, + "truncated": false, + "block": 9, + "row": 5070 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/modularity_und.m", + "sha256": "acf95c73348f420a0bce2a61ced59c35cf586d236abddd424f21572e5dc6fe8d", + "language": "MATLAB", + "lines": 122, + "truncated": false, + "block": 9, + "row": 5066 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/module_degree_zscore.m", + "sha256": "ed87dec9e24259042b0b872866532f91843952be1d644abde2074435c9986687", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3716 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/motif3funct_bin.m", + "sha256": "234dd9fe619046157bfa62e830859bc5c6fd619b0adeebd87504e8c2916290e9", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 9, + "row": 4617 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/motif3funct_wei.m", + "sha256": "a8f9135023782d9535570cba0b2d52536d0bb5476831a0c95ca456947bb418ea", + "language": "MATLAB", + "lines": 101, + "truncated": false, + "block": 9, + "row": 4964 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/motif3struct_bin.m", + "sha256": "827d44774a796204d233414a82bf34bef53ddc9553d8633029de3987bf2d5699", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 9, + "row": 4230 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/motif3struct_wei.m", + "sha256": "89ef6390bdb8a777792b11ef2c6b5539526beb9ccf73199b94d698aa35a006cd", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 9, + "row": 4657 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/motif4funct_bin.m", + "sha256": "e1e5e37c914ef1a0d003a965d948c6735be723c344a5f553052c77255c7fdf1f", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4777 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/motif4funct_wei.m", + "sha256": "db48db81adf9254cb1387b0d7eeea8146d039c7f2d2a532d96c7394a089cd566", + "language": "MATLAB", + "lines": 111, + "truncated": false, + "block": 9, + "row": 5080 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/motif4struct_bin.m", + "sha256": "076dab2857cdaccf4ecab363dfbb01be5f14f4384e641ca359756bb46789dba6", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 9, + "row": 4468 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/motif4struct_wei.m", + "sha256": "08c357d86266203855ae5f628ac66615090506b50d659e19888591ce38275e2d", + "language": "MATLAB", + "lines": 91, + "truncated": false, + "block": 9, + "row": 4868 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/navigation_wu.m", + "sha256": "134268950e137007fc95f1ca16fde6eb8baf7265020736c65c85639068d9c645", + "language": "MATLAB", + "lines": 112, + "truncated": false, + "block": 1, + "row": 3446 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/null_model_dir_sign.m", + "sha256": "d4f81d5cb7801140406b4f92c57e4204a80b6f43469168eeb93b9ee9057e670a", + "language": "MATLAB", + "lines": 188, + "truncated": false, + "block": 9, + "row": 5455 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/null_model_und_sign.m", + "sha256": "0585382acef560d9e016b4e6db1f1a4b145f10d4ad8b0f63ea3dc20fc3520727", + "language": "MATLAB", + "lines": 181, + "truncated": false, + "block": 9, + "row": 5429 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/pagerank_centrality.m", + "sha256": "e685d761d70dfc70e9cb18bd47b83e1a6f1aff5afd1925e741b66a7a3013e03d", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 1, + "row": 3120 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/participation_coef.m", + "sha256": "f0d64636004f46ddc950a2f2f86801c9bdc505e9c5f82d87fae6f4cd867f1627", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 3960 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/participation_coef_sign.m", + "sha256": "2c788d953c9a18c5363d138bd38eac1c24aef8c6c959ed094d57179e5c275b78", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 3955 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/partition_distance.m", + "sha256": "1b9234bed3576bd36de112d12f84db6666de051356d79dd4946a00e77c968399", + "language": "MATLAB", + "lines": 97, + "truncated": false, + "block": 9, + "row": 4590 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/path_transitivity.m", + "sha256": "8d3e402f1202a09c56c28129db63c2ba2ed4ea50fa87ba09ddfb5573785723b1", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 1, + "row": 3102 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/predict_fc.m", + "sha256": "3271f477e1dc02c7bd794823362be004cee869e618e3acbdf555935d4495e59a", + "language": "MATLAB", + "lines": 228, + "truncated": false, + "block": 1, + "row": 3992 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/quasi_idempotence.m", + "sha256": "a7fdcc2505225df4498cd65f3ac134e8b856a02e5ff3face02d5602f1db413a6", + "language": "MATLAB", + "lines": 110, + "truncated": false, + "block": 1, + "row": 3548 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/randmio_dir.m", + "sha256": "ddc88ae2b8c82ae877cd94b6afcc8eefc220b1534e3e5e9bfdfe689f93bfab59", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 9, + "row": 4222 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/randmio_dir_connected.m", + "sha256": "1edd0d055878b95e85737dea73df88e98e9540397f85b69f0deb681f87728ae5", + "language": "MATLAB", + "lines": 98, + "truncated": false, + "block": 6, + "row": 12631 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/randmio_dir_signed.m", + "sha256": "5f7e71844b6679a97dab7565d8606ebbc092c47054038d4ec90f1fbb465d1960", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 9, + "row": 4475 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/randmio_und.m", + "sha256": "95e95d2f5a2228f567b941ccb654368c5276781cd3d0c0c869105f8e3cde1b61", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 9, + "row": 4384 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/randmio_und_connected.m", + "sha256": "27ca8a49c9d53cc8f31e42f43f3e65a8250d4fb07efb96631f366340d305c997", + "language": "MATLAB", + "lines": 107, + "truncated": false, + "block": 9, + "row": 4715 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/randmio_und_signed.m", + "sha256": "9db1b0d597e428429e67747bc6923af3edd620425f90bec833a2ff0fff8ed7d6", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 9, + "row": 4472 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/randomize_graph_partial_und.m", + "sha256": "5ea151b127cd130ba8fc8e4f5584adf87070ef16d800fcdf13cb1a76c4a454a1", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 9, + "row": 4002 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/randomizer_bin_und.m", + "sha256": "0a220c660deb509765a365f7543613406603848842ca01810a82865e4b04459f", + "language": "MATLAB", + "lines": 140, + "truncated": false, + "block": 1, + "row": 3514 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/reachdist.m", + "sha256": "cb97bd1d355056f0928a6a165f4bc66f9fa9d9a8ff8241921902dc5f6aca7e43", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 9, + "row": 4210 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/rentian_scaling_2d.m", + "sha256": "0e92436c88914e8fc7896d27a73652cfb09ab3c28f7df5260bf87074b585c470", + "language": "MATLAB", + "lines": 197, + "truncated": false, + "block": 1, + "row": 3915 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/rentian_scaling_3d.m", + "sha256": "5eb65d2fb8e04710138c9b61b921149d656d12bce5fbc47ad2fd5c22a507df0d", + "language": "MATLAB", + "lines": 209, + "truncated": false, + "block": 1, + "row": 3962 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/reorderMAT.m", + "sha256": "322c4aa2e7180f16fcd991c8ed35fe83a2ea7c0988902d8ba574386ba996d027", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 9, + "row": 4111 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/reorder_matrix.m", + "sha256": "372cd94f4db2d820831109b9dc33b3ef238aca12f6b914c7574ae57e9befcf24", + "language": "MATLAB", + "lines": 105, + "truncated": false, + "block": 1, + "row": 3464 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/reorder_mod.m", + "sha256": "2ac55981717db0818f70659c863f55139712f875b4cb3f1135f9b3f8fdc3c024", + "language": "MATLAB", + "lines": 107, + "truncated": false, + "block": 9, + "row": 4665 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/resource_efficiency_bin.m", + "sha256": "2f8338f3037338981271d779652b3c4dc9eaf57280527666da510403f15bdf64", + "language": "MATLAB", + "lines": 140, + "truncated": false, + "block": 9, + "row": 4726 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/retrieve_shortest_path.m", + "sha256": "bb9a3bb0c3787d9b159428c58de92681608d6e506b6d87cfcaa92241b8dad03e", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3778 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/rich_club_bd.m", + "sha256": "5ae94b5096fc662236efe273bd14c91c79c9b9ab0ad5118081acea58a940eff3", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 1, + "row": 3163 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/rich_club_bu.m", + "sha256": "23a01ae4164094721ce73025582797e6e25855f83708a677c8d5940689ace59c", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 1, + "row": 3122 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/rich_club_wd.m", + "sha256": "211599ade605e3958cd1ea766349bd6927ba3c0fbb3029ea506efcf4a23da0f4", + "language": "MATLAB", + "lines": 75, + "truncated": false, + "block": 1, + "row": 3130 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/rich_club_wu.m", + "sha256": "427294598188d97899e3c5a1d03fc7271e87f72b4e8a3ad0e7c67b91c59dc648", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 1, + "row": 3129 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/rout_efficiency.m", + "sha256": "d9c5dd0bd5c72cca7eab1586182d0f9a83c7e65eb2f4957327178386bc8b6a58", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 1, + "row": 3263 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/score_wu.m", + "sha256": "2aa1b745982f8e0299fc599a99061d1de7c9deb49a5d4246492002e6609f8a13", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 1, + "row": 2847 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/search_information.m", + "sha256": "1870f0c01643338757d7b961c09a5dea6810c40a7f0c1a8cbaae1e7a644efb14", + "language": "MATLAB", + "lines": 117, + "truncated": false, + "block": 9, + "row": 4832 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/strengths_dir.m", + "sha256": "eee6c715f70be79d48eee0cda14f456015997662714353daaeb55c39eadb8ce3", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 1, + "row": 2691 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/strengths_und.m", + "sha256": "6e34d6de977c21497b3d1d9d89bb1c682aaa272f47eeb9cd904e97dd160a9565", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 1, + "row": 2444 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/strengths_und_sign.m", + "sha256": "5f750b5a68863fe578f9983dd9f1fc326dcfc998e0263153a57b25ec3c17b6e0", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3597 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/subgraph_centrality.m", + "sha256": "773a0149227ffc0149c265c0c4973edf2456599a453ed6e814c58b1cebc36608", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 1, + "row": 2791 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/threshold_absolute.m", + "sha256": "a7ff8ba040f30ba46791a3798832ed56c44397af1ac07a979c261cc8bdfdbc3f", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 6, + "row": 4847 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/threshold_proportional.m", + "sha256": "782a7be5dc218007f2d6b145b134073464f27d1da27da1687f8e62116581443a", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 6, + "row": 9143 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/transitivity_bd.m", + "sha256": "8587ee766f50a56f2831c3ff28d0500c24a8343e9626791c9a3840c5c4f829be", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 4109 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/transitivity_bu.m", + "sha256": "70bec558fba0d175227dac840bb833567fc167e17e6256486689d85712c6d536", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 9, + "row": 3277 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/transitivity_wd.m", + "sha256": "b18426da028b94927a54e93d7523f68a6b3169fc3bd298de1b0d70d1ca93a914", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 4121 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/transitivity_wu.m", + "sha256": "75c4070f8e23056685d0dbe1e79baa2abb95383979c3e58c4fdf79b38b3f8f3c", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 9, + "row": 3592 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/weight_conversion.m", + "sha256": "1eb6b2ff5e3a5c67b60c113928cf0bdb521713e1e040d4bb9c28471de85c5598", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4643 + }, + { + "path": "graphs/graph_preproc/BCT/2019_03_03_BCT/writetoPAJ.m", + "sha256": "7a8cf855920b01ed8107389eecdc5df6a694b69e3906107ee8d660cc2dffb5e7", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3546 + }, + { + "path": "graphs/graph_preproc/BCT/release_notes.m", + "sha256": "4abf1b615965b92e55c7b28dc8c87147addf801549037709358405c2142052be", + "language": "MATLAB", + "lines": 137, + "truncated": false, + "block": 1, + "row": 3774 + }, + { + "path": "graphs/graph_preproc/GraphKernel_matrixInput.m", + "sha256": "1be4a3bd1a1392e6d5919f83e302fb12d7c53bcdf1e04548b24f0a1c12f01cb9", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3493 + }, + { + "path": "graphs/graph_preproc/MutualInformation.m", + "sha256": "ef6ebef5857b9085154226fd681e52a3878675518800f9603ba19a4dd56be5d2", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3475 + }, + { + "path": "graphs/graph_preproc/SmallWorldNess-master/Computing_And_Testing_S_On_Data_Network.m", + "sha256": "5cfc9e1b2dcf49dc4cf05377fdc97d06c1b7d1259acc36c865c73fcc59a9e70a", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 4342 + }, + { + "path": "graphs/graph_preproc/SmallWorldNess-master/ER_Expected_L_C.m", + "sha256": "c76a93d77ff23ca5e1b97b8a1a01dab82898e9d4f09fa6a90dc7d931515937a0", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3249 + }, + { + "path": "graphs/graph_preproc/SmallWorldNess-master/NullModel_L_C.m", + "sha256": "a8efc56eea6a88cd2fd35ba4272bb37a79aa606c85d714bbd2e49a13f76b0ef2", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3701 + }, + { + "path": "graphs/graph_preproc/SmallWorldNess-master/SanalyticER.m", + "sha256": "fd322cbb181a312154a495ffcf836be91614bff1d0eff9d534d283daecd15800", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3882 + }, + { + "path": "graphs/graph_preproc/SmallWorldNess-master/SsampleER.m", + "sha256": "445d50aad5a06845cd27e53678196afdf1c46ca6c993a5da362e1f15f9e9cac1", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 9, + "row": 4233 + }, + { + "path": "graphs/graph_preproc/SmallWorldNess-master/clustering_coef_bu.m", + "sha256": "2b167bb0fb778d6395b766ab93be5fe60808527dffb9ff489b6680a379f1e75a", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3426 + }, + { + "path": "graphs/graph_preproc/SmallWorldNess-master/clusttriang.m", + "sha256": "93ee4bd918847dda2d9065575a38c0ee897bd06f3cbf238ceced92b8570eeaea", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3503 + }, + { + "path": "graphs/graph_preproc/SmallWorldNess-master/rand_pair.m", + "sha256": "cc7adcc16773c58ac8065b0d837aebcfef01060f0a2822fc7cf4ed1047acb6fb", + "language": "MATLAB", + "lines": 152, + "truncated": false, + "block": 9, + "row": 5118 + }, + { + "path": "graphs/graph_preproc/SmallWorldNess-master/random_graph.m", + "sha256": "d6c548d42d8fc52f353f7d7edd13fa07b5dd4e202faea272ee7cc96b151b45c2", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 9, + "row": 4766 + }, + { + "path": "graphs/graph_preproc/SmallWorldNess-master/reachdist.m", + "sha256": "cb97bd1d355056f0928a6a165f4bc66f9fa9d9a8ff8241921902dc5f6aca7e43", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 9, + "row": 4210 + }, + { + "path": "graphs/graph_preproc/SmallWorldNess-master/small_world_ness.m", + "sha256": "fb972351b8065a141b82e2c62d72648d4ce1e7ee439e0ea61300c7c17c83c2a9", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3743 + }, + { + "path": "graphs/graph_preproc/WLKernel_rowsInput.m", + "sha256": "fc836f35636f8a7679e982331b72306c0f21ca32dd1dae0d9e8b141db57affce", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 9, + "row": 3194 + }, + { + "path": "graphs/graph_preproc/WLKernel_setsInput.m", + "sha256": "8b4a50f086d9c6307a7531f7c09fa7fb438b2e8e095064112cd73d02bca8e28a", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3363 + }, + { + "path": "graphs/graph_preproc/WL_with_prior_sparsityThres_Ttest.m", + "sha256": "73941f992be49b0c56ecc111d36d29e1eb1ca8d03dddd08009f3c9ebeca4b708", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 3975 + }, + { + "path": "graphs/graph_preproc/WL_with_prior_sparsity_thresholding.m", + "sha256": "dff5f993a2c96e75a8004b903956b57f68c5c3cf3aae18a6a9342a521a857d9b", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3492 + }, + { + "path": "graphs/graph_preproc/array_to_graph.m", + "sha256": "78339fb47adf6f85211e6364318383f116199ef4715048ba12b1e3199b62fed0", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3132 + }, + { + "path": "graphs/graph_preproc/array_to_graph2.m", + "sha256": "8d61481d965eb7c0312e2c357d7a76c0e26607cd122c7f8d10268be707da818a", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3318 + }, + { + "path": "graphs/graph_preproc/cal_mi.m", + "sha256": "3389b5a0d006de9b7b3fd77f58e11ffe891c95921e3011623d4e1f0ec8a97d46", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3646 + }, + { + "path": "graphs/graph_preproc/cv_ExtGraphConstr_config.m", + "sha256": "fdc32a585f1fc44a615810a6d7e4f82bf288d6957a06c6c3a04080b3d700e1da", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 9, + "row": 4443 + }, + { + "path": "graphs/graph_preproc/cv_apply_sparsity_thres.m", + "sha256": "ffaf1622d01c3f57ba51aa69cc8320f020ba74f752129845620d83c1437018f6", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 9, + "row": 3321 + }, + { + "path": "graphs/graph_preproc/cv_computeMInetworks.py", + "sha256": "480cbefa4d80aecd93bd1e239502c8086322b033eb04746baa9aa9a3c054c17a", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 6999 + }, + { + "path": "graphs/graph_preproc/cv_graphConstruction_config.m", + "sha256": "16fca50183a5d1a932247083dd6ec8ea5f8479ef4ed89650cd5850bfc038535c", + "language": "MATLAB", + "lines": 245, + "truncated": false, + "block": 9, + "row": 5527 + }, + { + "path": "graphs/graph_preproc/cv_graphMetrics_config.m", + "sha256": "7a9111fa72d781b5032238093c1596bfe9e2b2ce761a4684d1aebe1b063976c9", + "language": "MATLAB", + "lines": 115, + "truncated": false, + "block": 9, + "row": 4803 + }, + { + "path": "graphs/graph_preproc/cv_graphSparsity_config.m", + "sha256": "18859109e3ae7b16bcd9af8df1d3a07e8325a73c33d67509cb19c322f8304ddf", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 4029 + }, + { + "path": "graphs/graph_preproc/cv_graph_PerfGraphConstruction.m", + "sha256": "5078b075472feac3b52b4246d77ddd122d78d621fb329e18237ac5e790d1ee7e", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3855 + }, + { + "path": "graphs/graph_preproc/cv_graph_PerfGraphMetrics.m", + "sha256": "49a04fbb43d65d301ddfbebfa2eb26c15b39c544ca2b771b8e72ba35d9db664f", + "language": "MATLAB", + "lines": 115, + "truncated": false, + "block": 9, + "row": 4979 + }, + { + "path": "graphs/graph_preproc/cv_graph_PerfSparsityThres.m", + "sha256": "bf2972ab3e70ef15290e172ec118919a190093ac9cdf6e9847757e73f00fc50d", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3772 + }, + { + "path": "graphs/graph_preproc/cv_graph_constructionKLS.m", + "sha256": "d8b794f52fc0afd02c0cf59677eb9282b6bc76b04afcb2f8e672da31ed75a3b8", + "language": "MATLAB", + "lines": 98, + "truncated": false, + "block": 9, + "row": 4770 + }, + { + "path": "graphs/graph_preproc/cv_graph_constructionREFPLUSP.m", + "sha256": "4d6d1bef82978cd965ba39cfb554e7d77b621aa22ed5909b8d8f71a230504754", + "language": "MATLAB", + "lines": 127, + "truncated": false, + "block": 9, + "row": 4954 + }, + { + "path": "graphs/graph_preproc/featSelectT.m", + "sha256": "68ebbea9fb5db5cf1158e156286282d5f09996e0b94b5644ea1735da39176977", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3391 + }, + { + "path": "graphs/graph_preproc/kde/kde.m", + "sha256": "358b3ac0dc813ef3369088bba6843b6ca008989117a834dcd99a9d7f58f1cd32", + "language": "MATLAB", + "lines": 145, + "truncated": false, + "block": 9, + "row": 5135 + }, + { + "path": "graphs/graph_preproc/kldiv/kldiv.m", + "sha256": "2c5d4584723dc5b80ad48ab6522f07c107e25c0f9f97fd7b88b5301ae3701303", + "language": "MATLAB", + "lines": 101, + "truncated": false, + "block": 6, + "row": 14390 + }, + { + "path": "graphs/graph_preproc/mi/condentropy.m", + "sha256": "33627b725ef4e0628e85de8ee93ba9ff266ec2f5f65b42b488c0d1feac8bd03d", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3670 + }, + { + "path": "graphs/graph_preproc/mi/condmutualinfo.m", + "sha256": "4191ea81f63a77afec4a7f6e2c7e13179fde949dafadb53f39a2859204624b76", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 3818 + }, + { + "path": "graphs/graph_preproc/mi/demo_mi.m", + "sha256": "d8a8029336ee9758414820395451192b777426e9c705a3064d19977f199bd648", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3459 + }, + { + "path": "graphs/graph_preproc/mi/elementmexheader.h", + "sha256": "91181baa13bd9ff95f1f3c3086eefebd62a82eecb8eea1971b79cb57f71876a5", + "language": "C/C++", + "lines": 22, + "truncated": false, + "block": 9, + "row": 1141 + }, + { + "path": "graphs/graph_preproc/mi/entropy.m", + "sha256": "14fb7f4f97ef4b9f688ca7b0966d02f0255d047f7663e0f658e78830861663c7", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3479 + }, + { + "path": "graphs/graph_preproc/mi/estcondentropy.cpp", + "sha256": "5153dbd1f86f5f86b676de7ecf2506305008ff11d3231e827e7f86e76939ef46", + "language": "C++", + "lines": 74, + "truncated": false, + "block": 9, + "row": 264 + }, + { + "path": "graphs/graph_preproc/mi/estentropy.cpp", + "sha256": "7a9adf3a0f4ee81e2b019a2a44c32bd2563daec001bd1fe2f0e6b653c9b698e1", + "language": "C++", + "lines": 53, + "truncated": false, + "block": 9, + "row": 206 + }, + { + "path": "graphs/graph_preproc/mi/estjointentropy.cpp", + "sha256": "b731c2f1ca824987e456fe1092ee5ea341e04fc61ae1b02da8fd0e3cb04234ec", + "language": "C++", + "lines": 65, + "truncated": false, + "block": 9, + "row": 227 + }, + { + "path": "graphs/graph_preproc/mi/estmutualinfo.cpp", + "sha256": "0d7b03c0713c82368125cb86851218a9cb10dc3674b0bf546bd8d331366bc313", + "language": "C++", + "lines": 132, + "truncated": false, + "block": 9, + "row": 422 + }, + { + "path": "graphs/graph_preproc/mi/estpa.cpp", + "sha256": "6b1e4a0dadab21774230ce22a7a001856771d97199cc81fa6cf4b06428356e69", + "language": "C++", + "lines": 183, + "truncated": false, + "block": 9, + "row": 521 + }, + { + "path": "graphs/graph_preproc/mi/estpab.cpp", + "sha256": "8a6401cdd23298e560b14eca20d2f035327d377a9ebef335672398640890d7a5", + "language": "C++", + "lines": 222, + "truncated": false, + "block": 9, + "row": 596 + }, + { + "path": "graphs/graph_preproc/mi/findjointstateab.cpp", + "sha256": "76bc35fd152324828c631c700e9e897bd2f8a8418987d7d0a40dad1b28d0a375", + "language": "C++", + "lines": 280, + "truncated": false, + "block": 9, + "row": 647 + }, + { + "path": "graphs/graph_preproc/mi/jointentropy.m", + "sha256": "9919860cdc1c518d31d90543197791541bcd8e8df6100d2b18790ed6e0b374bf", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3602 + }, + { + "path": "graphs/graph_preproc/mi/makeosmex.m", + "sha256": "1c0ea5696854f1cc972998ce4f6f8eff40eeb661fb2aa7201415048de6bcb73e", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3357 + }, + { + "path": "graphs/graph_preproc/mi/mergemultivariables.m", + "sha256": "53a419c099e0f54c84a341f79bedb13c78bf0e45b4230c67ab6b3a282fa84d95", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3719 + }, + { + "path": "graphs/graph_preproc/mi/miinclude.h", + "sha256": "c696c15912e4dd120adae7638ae445bf5bd06b0b47de4565f5a6722bb9acb67b", + "language": "C/C++", + "lines": 23, + "truncated": false, + "block": 9, + "row": 1143 + }, + { + "path": "graphs/graph_preproc/mi/mutualinfo.m", + "sha256": "2f4ec3d0ff977181434a29a20e877a5cfac34ee8c7264546c9a3738ecb53646b", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3360 + }, + { + "path": "graphs/graph_preproc/minf/hist2.m", + "sha256": "fa1dab668e19dbedd491a9634700437a939589cfc976fc1eb0b83b18d948d782", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3517 + }, + { + "path": "graphs/graph_preproc/minf/mi.m", + "sha256": "5a32d462091ae820cfdf3d353c3baf6297dd007ba439ade28078e1972f843bbd", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3516 + }, + { + "path": "graphs/graph_preproc/minf/mi_test.m", + "sha256": "4c601de2c2eadb94a7e3f5121839b9646906792e59b3ec4ba907f6c8ac960690", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3051 + }, + { + "path": "graphs/graph_preproc/py_calc_MI.py", + "sha256": "fb229e15f6927a866d293c9769c0d7d29228fe503e172a11b6147e6a6bdc43a3", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 9, + "row": 6500 + }, + { + "path": "graphs/graph_preproc/sparseCellArray.m", + "sha256": "5a3ef9eba2d3976a8202f30e43c45a1d3107c45791ac0102ae5cf5f1f6a9c65e", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3257 + }, + { + "path": "gridsearch/nk_ComputeEnsembleProbability.m", + "sha256": "8b97ab829cd098a3cf1067b7dddc7850853c8de087f9a18d61d742776e2fa625", + "language": "MATLAB", + "lines": 270, + "truncated": false, + "block": 9, + "row": 5552 + }, + { + "path": "gridsearch/nk_ComputeRegulFunction.m", + "sha256": "ea0488d181ac6d868d566a07c89a194012bb47095d9621978817e8fb0e19ae04", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 9, + "row": 4137 + }, + { + "path": "gridsearch/nk_FindGridOpt.m", + "sha256": "641eb1eda6c67d99fee7765027228af092095a0f973371771445fe8e24aa16c8", + "language": "MATLAB", + "lines": 117, + "truncated": false, + "block": 9, + "row": 4931 + }, + { + "path": "gridsearch/nk_GridOptimumSelector.m", + "sha256": "bf812743cd91b18263044a7ceb5cc09205bbeb227e16e7c2582a95cde851c794", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 9, + "row": 4579 + }, + { + "path": "gridsearch/nk_GridSearchHelper.m", + "sha256": "835a3dc5868cad25bc38aaa5d9a820c7edf758158ea6f4cac2430bd7fe5ae631", + "language": "MATLAB", + "lines": 362, + "truncated": false, + "block": 9, + "row": 5656 + }, + { + "path": "gridsearch/nk_MLOptimizer.m", + "sha256": "fc5471b0fe898afdf46f309ae95461f79e54db2a64281263bb763cc2ccb408af", + "language": "MATLAB", + "lines": 1120, + "truncated": false, + "block": 9, + "row": 5982 + }, + { + "path": "gridsearch/nk_MLOptimizer_ParamAnnealer.m", + "sha256": "2f9f2dbe1b1af906f75f3581e734146788aa5d508f49ebaf4f293b7007d83b06", + "language": "MATLAB", + "lines": 164, + "truncated": false, + "block": 9, + "row": 5271 + }, + { + "path": "gridsearch/nk_MLOptimizer_ParamCycler.m", + "sha256": "6b2e4fc2fd0370c549b0993a7930555f20549f8a2ba6e58e7f3c771c1c535c4c", + "language": "MATLAB", + "lines": 195, + "truncated": false, + "block": 9, + "row": 5378 + }, + { + "path": "gridsearch/nk_MLOptimizer_Wrapper.m", + "sha256": "82ef93997d0e0fbe83ba1c62206ead2f2467215183e3fa08861071057bcec1a1", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3994 + }, + { + "path": "gridsearch/nk_MLOptimizer_WrapperMulti.m", + "sha256": "9d9ec5be2c69b08a56d2742b0b85eebf038b4c11671a66e1cd543c8dd58ef925", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 9, + "row": 4149 + }, + { + "path": "gridsearch/nk_MLOptimizer_main.m", + "sha256": "b3362ffb087713866969a086575511d643f7c1990deb0da5533ff0e97d4d5826", + "language": "MATLAB", + "lines": 278, + "truncated": false, + "block": 9, + "row": 5610 + }, + { + "path": "gridsearch/nk_ModelNodeSelector.m", + "sha256": "89566e1b75915b9c95d6ac1fc6c2c9442b20e1b919e03abdb63a3286e8d0993a", + "language": "MATLAB", + "lines": 252, + "truncated": false, + "block": 9, + "row": 5613 + }, + { + "path": "gui/binarize_regr.m", + "sha256": "a10a6daf0062b68984790878e273b6614499e429d2a345fdd2d0c27bfa87c24e", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3255 + }, + { + "path": "gui/create_visdata_tables.m", + "sha256": "870cdd56413f6e4734ede6979f79848853c1c65b96c40d215477613868b2bccf", + "language": "MATLAB", + "lines": 101, + "truncated": false, + "block": 9, + "row": 5254 + }, + { + "path": "gui/crossanalyse.m", + "sha256": "018e6d7abae38ab4d68a78b83018ebcf46baf404b83619ae23579cdba6598419", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 4174 + }, + { + "path": "gui/display_SubParam.m", + "sha256": "dd375560ddb6db73820aa3959bcf4d8e7977210b24f745f730c0a7dabf08ce01", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3923 + }, + { + "path": "gui/display_classcomparison_matrix.m", + "sha256": "6ff1e6749d5e52026b8c0df5dc2626e2b27331b252881f10e46ef957ee4ce993", + "language": "MATLAB", + "lines": 148, + "truncated": false, + "block": 9, + "row": 5099 + }, + { + "path": "gui/display_classplot.m", + "sha256": "7ec9c871c98942a7640e9ad10260d4ac0c339e37fd46badafda71e716fccb4c5", + "language": "MATLAB", + "lines": 485, + "truncated": false, + "block": 9, + "row": 5761 + }, + { + "path": "gui/display_classplot_oocv.m", + "sha256": "fbec9626fce8c77b690bc963320f5efe574ac041f14c8128956a171a1e2ca320", + "language": "MATLAB", + "lines": 367, + "truncated": false, + "block": 9, + "row": 5666 + }, + { + "path": "gui/display_comparator.m", + "sha256": "80f93c5fa6166e891063b9651d87f9bca0c99919718108defd8bbfb571921e87", + "language": "MATLAB", + "lines": 960, + "truncated": false, + "block": 9, + "row": 5944 + }, + { + "path": "gui/display_contigmat.m", + "sha256": "9e76d3839612b3af4fcff01dc9dcd28b2367cdacf3f95af1a10947a3c41087b2", + "language": "MATLAB", + "lines": 98, + "truncated": false, + "block": 9, + "row": 5063 + }, + { + "path": "gui/display_contigmat_app.m", + "sha256": "c89d8dee8a4e0be35a7700d582a07f58dd13c49a43c5b8036e2ca136c2431c64", + "language": "MATLAB", + "lines": 93, + "truncated": false, + "block": 9, + "row": 4999 + }, + { + "path": "gui/display_contigplot.m", + "sha256": "3da8f0421be17ad45ec2e46a7240545840c1ac49a42155c42d46541a7b2ad936", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 4269 + }, + { + "path": "gui/display_main.m", + "sha256": "fea49488f49c098c30f769aaa3810fda4fbc6dad89f900427f65596ec372b5a0", + "language": "MATLAB", + "lines": 166, + "truncated": false, + "block": 9, + "row": 5365 + }, + { + "path": "gui/display_mainN.m", + "sha256": "d90bae65e44dcf6bdf4cc46f9be27b1dbdd15dbc5cd4fc353ca1f34f5efc5c75", + "language": "MATLAB", + "lines": 93, + "truncated": false, + "block": 9, + "row": 4827 + }, + { + "path": "gui/display_modelperf.m", + "sha256": "81b9c6609d4e095f93e41d76efd99308a0fd4da217f0f84c48fd8b4c1bccb5ef", + "language": "MATLAB", + "lines": 351, + "truncated": false, + "block": 9, + "row": 5709 + }, + { + "path": "gui/display_modelperf_bagged.m", + "sha256": "dfc1caef108caa6b7ea83bc15873fa4a483be8904b7f1c90eb7e54a850e562e6", + "language": "MATLAB", + "lines": 166, + "truncated": false, + "block": 9, + "row": 5343 + }, + { + "path": "gui/display_multiclassplot.m", + "sha256": "3798c60f1d3ff7cd96af3dd8dc5665d653ecc688c05cc63105a507ea932707e0", + "language": "MATLAB", + "lines": 153, + "truncated": false, + "block": 9, + "row": 5251 + }, + { + "path": "gui/display_piecharts.m", + "sha256": "7f14d57f830d9934296bd38e9da78408f494bb5457740cfb2a5d7c50f382b7e8", + "language": "MATLAB", + "lines": 128, + "truncated": false, + "block": 9, + "row": 4983 + }, + { + "path": "gui/display_regrplot.m", + "sha256": "4197d5b2514bf983840f881112a5b12cb8ec3364e86d9785fd0ff21d8e5ce96e", + "language": "MATLAB", + "lines": 277, + "truncated": false, + "block": 9, + "row": 5564 + }, + { + "path": "gui/display_regrplot_oocv_labels_unknown.m", + "sha256": "c8947f4430706201828d2ba17786fb74d52b99c4c1ed8e96f377bc0182d0b8b9", + "language": "MATLAB", + "lines": 215, + "truncated": false, + "block": 9, + "row": 5369 + }, + { + "path": "gui/display_roc.m", + "sha256": "e1df16ec766c7fff5ade15f73e8c713fd2d830cb112b875be355a80c95a085fb", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 9, + "row": 4379 + }, + { + "path": "gui/display_seqopt_perf.m", + "sha256": "79f9d4549394da75a55863cc0c12568526774230158640a2d6fded69add2626a", + "language": "MATLAB", + "lines": 169, + "truncated": false, + "block": 9, + "row": 5352 + }, + { + "path": "gui/display_tablegenerator.m", + "sha256": "ec1591fc2e56c9302b131b358c7633c886e904f44ed83238811c0cd65319590e", + "language": "MATLAB", + "lines": 329, + "truncated": false, + "block": 9, + "row": 5704 + }, + { + "path": "gui/display_visual.m", + "sha256": "1f3e2be041534fd10504c36c7f2f51df51e798a00b22a3a811b07b53a42857d0", + "language": "MATLAB", + "lines": 1023, + "truncated": false, + "block": 9, + "row": 5932 + }, + { + "path": "gui/display_writetable.m", + "sha256": "8eb9b64972ed0d8bd00ce498a7d311e8d210c8e8497e3ba4a7a9c47ed49a67c1", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 9, + "row": 4247 + }, + { + "path": "gui/dsxy2figxy.m", + "sha256": "640d4935e73e3f5d551bcce0fcded758f18b2db0efc3a84a5bedf8e63e09777d", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 6, + "row": 11390 + }, + { + "path": "gui/export_features.m", + "sha256": "0cfb1389d6d6a43becfdb6ba4419e5c5158786099e049e4d19ddb984ab0520c1", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3728 + }, + { + "path": "gui/export_fig/ImageSelection.java", + "sha256": "c6966ada1d95692bfefecd55ffb72671e7e108849b6a8af980985dc9cb1b51a0", + "language": "Java", + "lines": 38, + "truncated": false, + "block": 5, + "row": 11637 + }, + { + "path": "gui/export_fig/append_pdfs.m", + "sha256": "d32da47ff38057f4bd898cb4d6fba42c32ebc9dc954aa365d30388e3e8722d58", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 6, + "row": 11714 + }, + { + "path": "gui/export_fig/copyfig.m", + "sha256": "c9e0364e85204e0990f23f10a775e666f9cefec84470f3ae9efcc8f057468378", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 6, + "row": 9198 + }, + { + "path": "gui/export_fig/crop_borders.m", + "sha256": "1cf6c00c3fa503fb3bef9c2585db6ef05ccf6d36d620d0967006221bc83f425e", + "language": "MATLAB", + "lines": 157, + "truncated": false, + "block": 9, + "row": 5042 + }, + { + "path": "gui/export_fig/eps2pdf.m", + "sha256": "3caec260049f4379e48472485f6daeac1a638e3c601f00d5d662753194eaf3db", + "language": "MATLAB", + "lines": 189, + "truncated": false, + "block": 9, + "row": 5439 + }, + { + "path": "gui/export_fig/export_fig-master/ImageSelection.java", + "sha256": "c6966ada1d95692bfefecd55ffb72671e7e108849b6a8af980985dc9cb1b51a0", + "language": "Java", + "lines": 38, + "truncated": false, + "block": 5, + "row": 11637 + }, + { + "path": "gui/export_fig/export_fig-master/append_pdfs.m", + "sha256": "d32da47ff38057f4bd898cb4d6fba42c32ebc9dc954aa365d30388e3e8722d58", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 6, + "row": 11714 + }, + { + "path": "gui/export_fig/export_fig-master/copyfig.m", + "sha256": "c9e0364e85204e0990f23f10a775e666f9cefec84470f3ae9efcc8f057468378", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 6, + "row": 9198 + }, + { + "path": "gui/export_fig/export_fig-master/crop_borders.m", + "sha256": "1cf6c00c3fa503fb3bef9c2585db6ef05ccf6d36d620d0967006221bc83f425e", + "language": "MATLAB", + "lines": 157, + "truncated": false, + "block": 9, + "row": 5042 + }, + { + "path": "gui/export_fig/export_fig-master/eps2pdf.m", + "sha256": "3caec260049f4379e48472485f6daeac1a638e3c601f00d5d662753194eaf3db", + "language": "MATLAB", + "lines": 189, + "truncated": false, + "block": 9, + "row": 5439 + }, + { + "path": "gui/export_fig/export_fig-master/export_fig.m", + "sha256": "7f9a35c3284b268c59ce72d26cb7cbf332324b4e58fcb70da1cf0c81ed027087", + "language": "MATLAB", + "lines": 1297, + "truncated": false, + "block": 9, + "row": 5978 + }, + { + "path": "gui/export_fig/export_fig-master/fix_lines.m", + "sha256": "170d2f25cfc7c632166d2e5f159f322ba8d86ad3891dd3c5c763e90003b5f482", + "language": "MATLAB", + "lines": 151, + "truncated": false, + "block": 6, + "row": 15868 + }, + { + "path": "gui/export_fig/export_fig-master/ghostscript.m", + "sha256": "9f3550defe1f699195b50b0a12ac14c37a89b7f49c104191db89f5bf5831eefb", + "language": "MATLAB", + "lines": 196, + "truncated": false, + "block": 9, + "row": 5388 + }, + { + "path": "gui/export_fig/export_fig-master/im2gif.m", + "sha256": "427e36f7fc087eeb4d9f05a8887317520a7400cd74e02e32148d6301fefcbe45", + "language": "MATLAB", + "lines": 186, + "truncated": false, + "block": 6, + "row": 15710 + }, + { + "path": "gui/export_fig/export_fig-master/isolate_axes.m", + "sha256": "aa99af755300893635de43e1959da24a14ed1e143b7c0598cc1cd6751ffe6fb5", + "language": "MATLAB", + "lines": 130, + "truncated": false, + "block": 6, + "row": 14591 + }, + { + "path": "gui/export_fig/export_fig-master/pdf2eps.m", + "sha256": "427e067c9e98f2aed893dfd321eedfa667a761c3c56c450547a74066b008eb03", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 6, + "row": 8457 + }, + { + "path": "gui/export_fig/export_fig-master/pdftops.m", + "sha256": "6f93a9dd404b49abeabb8970f1f0624d1b941720d61b05ced579a0c486e65044", + "language": "MATLAB", + "lines": 167, + "truncated": false, + "block": 9, + "row": 5214 + }, + { + "path": "gui/export_fig/export_fig-master/print2array.m", + "sha256": "9fabc8b80642427ea9c6e75c9a9e7ea1cff2d6ec0497140d7e825660b0958f6a", + "language": "MATLAB", + "lines": 259, + "truncated": false, + "block": 9, + "row": 5520 + }, + { + "path": "gui/export_fig/export_fig-master/print2eps.m", + "sha256": "1fa6d94a6b63492a3251a08e95705db1913271367f07e80d347ed27969955ac1", + "language": "MATLAB", + "lines": 529, + "truncated": false, + "block": 9, + "row": 5865 + }, + { + "path": "gui/export_fig/export_fig-master/read_write_entire_textfile.m", + "sha256": "b8ddad6de14e4cd679c50d28317697359043e9f66bf0a92051c10b75be5fe312", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 6, + "row": 6218 + }, + { + "path": "gui/export_fig/export_fig-master/user_string.m", + "sha256": "bcd192c9880dfa588d6da5be08c04c5e3edaa3f3e7910a0a12c7a6688a45a74e", + "language": "MATLAB", + "lines": 105, + "truncated": false, + "block": 6, + "row": 13226 + }, + { + "path": "gui/export_fig/export_fig-master/using_hg2.m", + "sha256": "64a17d20178927fe5b163e366d3221761d5dab1a0534db7a5b867ab83e15e7f3", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 6, + "row": 6848 + }, + { + "path": "gui/export_fig/export_fig.m", + "sha256": "7f9a35c3284b268c59ce72d26cb7cbf332324b4e58fcb70da1cf0c81ed027087", + "language": "MATLAB", + "lines": 1297, + "truncated": false, + "block": 9, + "row": 5978 + }, + { + "path": "gui/export_fig/fix_lines.m", + "sha256": "170d2f25cfc7c632166d2e5f159f322ba8d86ad3891dd3c5c763e90003b5f482", + "language": "MATLAB", + "lines": 151, + "truncated": false, + "block": 6, + "row": 15868 + }, + { + "path": "gui/export_fig/ghostscript.m", + "sha256": "9f3550defe1f699195b50b0a12ac14c37a89b7f49c104191db89f5bf5831eefb", + "language": "MATLAB", + "lines": 196, + "truncated": false, + "block": 9, + "row": 5388 + }, + { + "path": "gui/export_fig/im2gif.m", + "sha256": "427e36f7fc087eeb4d9f05a8887317520a7400cd74e02e32148d6301fefcbe45", + "language": "MATLAB", + "lines": 186, + "truncated": false, + "block": 6, + "row": 15710 + }, + { + "path": "gui/export_fig/isolate_axes.m", + "sha256": "aa99af755300893635de43e1959da24a14ed1e143b7c0598cc1cd6751ffe6fb5", + "language": "MATLAB", + "lines": 130, + "truncated": false, + "block": 6, + "row": 14591 + }, + { + "path": "gui/export_fig/pdf2eps.m", + "sha256": "427e067c9e98f2aed893dfd321eedfa667a761c3c56c450547a74066b008eb03", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 6, + "row": 8457 + }, + { + "path": "gui/export_fig/pdftops.m", + "sha256": "6f93a9dd404b49abeabb8970f1f0624d1b941720d61b05ced579a0c486e65044", + "language": "MATLAB", + "lines": 167, + "truncated": false, + "block": 9, + "row": 5214 + }, + { + "path": "gui/export_fig/print2array.m", + "sha256": "9fabc8b80642427ea9c6e75c9a9e7ea1cff2d6ec0497140d7e825660b0958f6a", + "language": "MATLAB", + "lines": 259, + "truncated": false, + "block": 9, + "row": 5520 + }, + { + "path": "gui/export_fig/print2eps.m", + "sha256": "1fa6d94a6b63492a3251a08e95705db1913271367f07e80d347ed27969955ac1", + "language": "MATLAB", + "lines": 529, + "truncated": false, + "block": 9, + "row": 5865 + }, + { + "path": "gui/export_fig/read_write_entire_textfile.m", + "sha256": "b8ddad6de14e4cd679c50d28317697359043e9f66bf0a92051c10b75be5fe312", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 6, + "row": 6218 + }, + { + "path": "gui/export_fig/user_string.m", + "sha256": "bcd192c9880dfa588d6da5be08c04c5e3edaa3f3e7910a0a12c7a6688a45a74e", + "language": "MATLAB", + "lines": 105, + "truncated": false, + "block": 6, + "row": 13226 + }, + { + "path": "gui/export_fig/using_hg2.m", + "sha256": "64a17d20178927fe5b163e366d3221761d5dab1a0534db7a5b867ab83e15e7f3", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 6, + "row": 6848 + }, + { + "path": "gui/export_performance.m", + "sha256": "0d9409d122ec342b285014c04d821287d9a43afb626113b9811266ebde807a70", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 9, + "row": 4778 + }, + { + "path": "gui/export_scores.m", + "sha256": "045ad60874daf96bf3ce7cc467ed7360a11e8da35b6231681d2074c8a9416613", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 9, + "row": 4802 + }, + { + "path": "gui/extract_subparam_performance.m", + "sha256": "44996d1ed38b2f72205ed5bb0e18528aad64ef8dbf06fb60912fd9a6eaa81e30", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4153 + }, + { + "path": "gui/get_oocvind.m", + "sha256": "3749221f0f63b4781d2199431c473b14e7b4a37f373025fac1a2961c4401ff5e", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 9, + "row": 3412 + }, + { + "path": "gui/imagingMLI.m", + "sha256": "c02dce9991af605614ab9ae438d0bcc89755ec5c5d4d45bfe4d0e344e7dfdc95", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3524 + }, + { + "path": "gui/load_GDdims.m", + "sha256": "d292b37d14f17e235d03b02498083139ff78988c1089bbf25e250178d7fdfbfc", + "language": "MATLAB", + "lines": 309, + "truncated": false, + "block": 9, + "row": 5819 + }, + { + "path": "gui/load_OOCV.m", + "sha256": "20d4db0d55cc481afcfd8d2d13becf85f85d3c9e2e8451cab866796d1bbb7109", + "language": "MATLAB", + "lines": 116, + "truncated": false, + "block": 9, + "row": 5247 + }, + { + "path": "gui/load_analysis.m", + "sha256": "88d90ad3a3058f2d88e77ede6343657a87073cd8f4b27c057d96fa1a82f2c593", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 3799 + }, + { + "path": "gui/load_modal.m", + "sha256": "fde7ff789d168b25c3af9b43364bcd2e41880b1d5ed0081173fce177c3e1f8f3", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 2997 + }, + { + "path": "gui/load_popupmenu1.m", + "sha256": "64fe5a0f709a3891b54556bddcbf1857b81f3ec00f5d9a4773228a846f4e19c0", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3295 + }, + { + "path": "gui/load_selAnalysis.m", + "sha256": "aea314ac3b4aa4353e5eec9f3e28caf5d94c52883554bca47b9e626f179964b6", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 9, + "row": 4375 + }, + { + "path": "gui/load_selCVoocv.m", + "sha256": "ce2a1e3019583661e0cb96759e3477177a20c2bb10ba6c9c28c89a0edcf9381c", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 9, + "row": 3434 + }, + { + "path": "gui/load_selCase.m", + "sha256": "e68e013175365b5e8c83da12f8c297310dfef09e3bf40bbf13a737649567d1ae", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 9, + "row": 2989 + }, + { + "path": "gui/load_selLabel.m", + "sha256": "d61d2cb925c3d0fde88ef217e2d06c32def8b2af94868736412e1f3045ced1db", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3068 + }, + { + "path": "gui/load_selModality.m", + "sha256": "8b06d3bcba97972655f36ca60c8244329c636a2215f1cc8fa335b55376ce5207", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 5123 + }, + { + "path": "gui/load_selModelMeasures.m", + "sha256": "d34d896a485610f3a1d6fa87d51e811710848368c8788435bc978dae95b8a9ac", + "language": "MATLAB", + "lines": 75, + "truncated": false, + "block": 9, + "row": 4629 + }, + { + "path": "gui/load_selOneVsAll_Info.m", + "sha256": "0dc421200af07ae6626682906cceb079d5ca578dc144aec7d8dc9b9e9cde11f4", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 3047 + }, + { + "path": "gui/load_selPager.m", + "sha256": "52abb3d9ea24a520e4b4895fb1819c9147f09c4324fc2de12825b2fecc8698e4", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3816 + }, + { + "path": "gui/load_selSubParams.m", + "sha256": "47118fbadae6ffcf00ec659d4efa5ebc1305400914e7fc7fc3bc8bc3913951a7", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 9, + "row": 3341 + }, + { + "path": "gui/load_selVisMeas2.m", + "sha256": "b36d2576bed955d6791010bf8afda6ea355649511073ad0af5d2ee1b9703034d", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3548 + }, + { + "path": "gui/load_selYAxis.m", + "sha256": "daefe4684c30646d13ba77a013ccccd10817da493cadc38752cc16a2bda8013d", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3605 + }, + { + "path": "gui/nk_ItemSelector.m", + "sha256": "a46b96e27f64cc52f3361b23ec628b74ed95d92b2ac631ed2e062220e6a4f56f", + "language": "MATLAB", + "lines": 905, + "truncated": false, + "block": 9, + "row": 5902 + }, + { + "path": "gui/nk_ItemSelectorApp.m", + "sha256": "a9456ef591859b05575d71722b94c1337bfd51c5f606596f40eaf092b2b5c5f4", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 2991 + }, + { + "path": "gui/nk_ItemSelector_App_exported.m", + "sha256": "43bd9cc7eff08c0f804b9027b5714bb138ca0d08c7e09784413d049a08eaec10", + "language": "MATLAB", + "lines": 1210, + "truncated": false, + "block": 9, + "row": 5976 + }, + { + "path": "gui/nk_OOCVDataIO.m", + "sha256": "0e77d813bfe224bb356264bb6a31631baa2e68fc77e0208f5d31b0e46a6e8134", + "language": "MATLAB", + "lines": 428, + "truncated": false, + "block": 9, + "row": 5716 + }, + { + "path": "gui/nk_PrintResults2.m", + "sha256": "732000cdcdae890bc56e3bbef6e21ca2d596569189e974dccdf3de3f5698caa5", + "language": "MATLAB", + "lines": 1467, + "truncated": false, + "block": 9, + "row": 5985 + }, + { + "path": "gui/nk_main.m", + "sha256": "37ee7a2177d7959b746a9c85c74acee9280cbbe7ea595894a87460ba94b05ca6", + "language": "MATLAB", + "lines": 185, + "truncated": false, + "block": 9, + "row": 5265 + }, + { + "path": "gui/nk_results.m", + "sha256": "fe651c1df021be32934846b03fd98698937b7008965b76af0fdab63f2192eeaa", + "language": "MATLAB", + "lines": 511, + "truncated": false, + "block": 9, + "row": 5784 + }, + { + "path": "gui/plotshaded.m", + "sha256": "18b542e558c6c4ccc654a9d78e28b1a4b7ae6339c25f08799d58dfc14a48a762", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 9, + "row": 3970 + }, + { + "path": "gui/polyparci.m", + "sha256": "b7f83d939a1a8b99aa8031a06caba5e6cd96fa34b519b19eff68f8d4c87c1976", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 9, + "row": 4735 + }, + { + "path": "gui/print_figure.m", + "sha256": "26a6d0a73377d41e835865986521e87e30385f119cc50cf88d2cc7e7c44777c4", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3166 + }, + { + "path": "gui/printvis_ranked_cross_binary.m", + "sha256": "ec92adc43e53d05525ee459bc076279adaff7fd53276e1b12705dd8523956499", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 9, + "row": 4746 + }, + { + "path": "gui/sel_onevsone.m", + "sha256": "e2fbc4dae7dd5f146f421f15a8d8f6726a0b7101aaa8199c51998863126bdee2", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3986 + }, + { + "path": "gui/set_SubInd.m", + "sha256": "ea996437be24c9fdaeed67a362ac114486adad711a4f2b41426cf07782feec1c", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3173 + }, + { + "path": "gui/set_panel_visibility.m", + "sha256": "15f5ec1641b0f9376744d702c2461005a6dce6db08d4f9d5aa6e1e518bf8ced4", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3190 + }, + { + "path": "gui/set_visibility.m", + "sha256": "6cd752d91581da7987fe79a428495eba1d7d858240e196f65b457eab7fc85c97", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3720 + }, + { + "path": "gui/switch_analysis.m", + "sha256": "bd0d78d83db6536c866a46eb406a44b8af92348601ad2a244bcd65fd0c22d393", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 9, + "row": 4561 + }, + { + "path": "gui/tbl2file.m", + "sha256": "b27626148994c4ace2c5f2f464c883930d96d6e9b71f3700e49090213072ef3b", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 9, + "row": 4155 + }, + { + "path": "h.m", + "sha256": "fdb016e6925e89f5504cd0bae6ff085b5a1d8ac5595a02fe1d54ff012e68471f", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3301 + }, + { + "path": "hpc/SGE_NeuroMiner_MLI.sh", + "sha256": "0ab1e2144af6ade7b849cecdfb13d4429eaaa8d731a0ea6e8bcffdcdd06eb70f", + "language": "Shell", + "lines": 165, + "truncated": false, + "block": 9, + "row": 14338 + }, + { + "path": "hpc/SGE_NeuroMiner_OOCV.sh", + "sha256": "8b56e0ba5aa1ef03f48077333da8e6017756db996a1b05657b81bcb623bf1ebf", + "language": "Shell", + "lines": 169, + "truncated": false, + "block": 9, + "row": 14340 + }, + { + "path": "hpc/SGE_NeuroMiner_PreProc.sh", + "sha256": "46e678ecb4a22d1183473cc99a41b641b6bb77f2b49f9c1c988c542e9bf8c32e", + "language": "Shell", + "lines": 127, + "truncated": false, + "block": 9, + "row": 14315 + }, + { + "path": "hpc/SGE_NeuroMiner_Simulate.sh", + "sha256": "d49690f38fdbbd38a78a1a2ddaac0f5e1f5d96f515b39de7e1bafa94ec24c9ca", + "language": "Shell", + "lines": 144, + "truncated": false, + "block": 9, + "row": 14326 + }, + { + "path": "hpc/SGE_NeuroMiner_Train.sh", + "sha256": "672b94b221d3774c1aa770dc90741c69682ca6f8f88472f1dedd8c0a478eb7a6", + "language": "Shell", + "lines": 140, + "truncated": false, + "block": 9, + "row": 14325 + }, + { + "path": "hpc/SGE_NeuroMiner_VisModels.sh", + "sha256": "6c41f0b3849d40183655f12f7d9de860e33d71d6f2ce5878e9e4c62dea9bcfe1", + "language": "Shell", + "lines": 173, + "truncated": false, + "block": 9, + "row": 14344 + }, + { + "path": "hpc/SLURM_NeuroMiner_PreProc.sh", + "sha256": "69f9d34eb9e48d4fd735af62057077a3bc75f84fdd938123af1eb0b0fd2c7147", + "language": "Shell", + "lines": 126, + "truncated": false, + "block": 9, + "row": 14317 + }, + { + "path": "hpc/nk_GenGridAct_batch.m", + "sha256": "6b180572f8c934469699ad3c135a0eb753151392895d43a0b7a5e4f0c9552d56", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3863 + }, + { + "path": "hpc/nk_MLInterpreter_batch.m", + "sha256": "055a2e9228147614ca6d5e9d71b805e8d9ad9a16c6324437a5386d7dd683a167", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 9, + "row": 4865 + }, + { + "path": "hpc/nk_MLOptimizer_batch.m", + "sha256": "fff86a05ab13a595a8931880510a3b920c86db3386971c72371887f08b9e5252", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 9, + "row": 4495 + }, + { + "path": "hpc/nk_OOCV_batch.m", + "sha256": "77fb72f15448b9fc7a7a2ffedf8b6937798d9b3ca18692682e18e641703bb153", + "language": "MATLAB", + "lines": 92, + "truncated": false, + "block": 9, + "row": 4720 + }, + { + "path": "hpc/nk_Preprocess_batch.m", + "sha256": "a55d4299a8cdb0d944a7ff1db36627297f7d00026e8a713da3cbaa8a33f215b7", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 9, + "row": 4353 + }, + { + "path": "hpc/nk_SimulateML_batch.m", + "sha256": "81449ed30b05550e6ee3791b7176ae053ca93c30989b7b355166ced80177dadf", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 9, + "row": 4347 + }, + { + "path": "hpc/nk_VisModels_batch.m", + "sha256": "85c733626d915d154356f10da30583d8c7d2cbdb93fdabcd70c71642bd721e84", + "language": "MATLAB", + "lines": 93, + "truncated": false, + "block": 9, + "row": 4789 + }, + { + "path": "interpretable/CARE_barMLI.m", + "sha256": "1659655c637a07595831a67cebbe772de6910a075d0e470a8f743889119ded9f", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 9, + "row": 4500 + }, + { + "path": "interpretable/barMLI.m", + "sha256": "890105171973940ccdd206270eb8b8e0445124bf1e28d667c0e7ad9386bf70fb", + "language": "MATLAB", + "lines": 133, + "truncated": false, + "block": 9, + "row": 4972 + }, + { + "path": "interpretable/barMLIN.m", + "sha256": "8d6a0a44b4f8533068a41e7937419b481c05eb29e9d901aaa6d897af8315e1a2", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 9, + "row": 4454 + }, + { + "path": "interpretable/make_default_MLI_struct.m", + "sha256": "a035f55184d8c52208351fd47533b1e4b8904ecffb452e984ef0db6b09f46d38", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3520 + }, + { + "path": "interpretable/nk_CreateData4MLInterpreter.m", + "sha256": "151a90a94bca93cc0a58f23203248e44559339f6de6b08236320b50bb31a9937", + "language": "MATLAB", + "lines": 138, + "truncated": false, + "block": 9, + "row": 5007 + }, + { + "path": "interpretable/nk_MLInterpreter.m", + "sha256": "7cbf62120c6ae3eafb65bddfbdd2d4f9f2e4cff70f57d0194ea902c7f8f2213f", + "language": "MATLAB", + "lines": 830, + "truncated": false, + "block": 9, + "row": 5955 + }, + { + "path": "interpretable/nk_MLInterpreterPrep.m", + "sha256": "a40a223393409aa6368cd497d62b34bb904f253571a749f20527dfdde551df6e", + "language": "MATLAB", + "lines": 411, + "truncated": false, + "block": 9, + "row": 5740 + }, + { + "path": "interpretable/nk_MapModelPredictions.m", + "sha256": "ea4f69fe5124eaedf19ab45e8c41ce7335e241a01de7bff3fba6f0f1c41a3997", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 3897 + }, + { + "path": "interpretable/nk_SparseMaskObserv.m", + "sha256": "9cead71cf2f4884fb0c126481ca8058b08b5cdd1d43549c06dd10afcd9d15005", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 9, + "row": 2975 + }, + { + "path": "mli_orthviews.m", + "sha256": "ce44cadfb1efb07f9029caf03abdbdba7b5eded3493a261a1086ec89ba4927a3", + "language": "MATLAB", + "lines": 1952, + "truncated": false, + "block": 9, + "row": 5994 + }, + { + "path": "nk_AdjBrainMask.m", + "sha256": "50e2a2960a214eb565e4540341ec721414948dc49f7eca851b184081fb7db59c", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3847 + }, + { + "path": "nk_ApplyLabelTransform.m", + "sha256": "680b0ec0dc67be0efc59eae920c029f203cabe5e1b46f9b21047cb7ca5ac1429", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3447 + }, + { + "path": "nk_ApplyTrainedPreproc.m", + "sha256": "a73f7a87f7aa6600c6eecf80428250b525b547641c60ddb917d74ac17aee4db7", + "language": "MATLAB", + "lines": 182, + "truncated": false, + "block": 9, + "row": 5386 + }, + { + "path": "nk_BuildEnsembleEntropy.m", + "sha256": "c9b1cdec85b6c55259600fe092748be91b43fe5be1e762e38d2ae333af7e7701", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 9, + "row": 4307 + }, + { + "path": "nk_CVGridSelector.m", + "sha256": "a04c015bcdbb8c879626b4a99e4c477b4595640d9202f539073801afa27da034", + "language": "MATLAB", + "lines": 94, + "truncated": false, + "block": 9, + "row": 4538 + }, + { + "path": "nk_CVpartition.m", + "sha256": "be089ef4cfa55df7b0f3e1277972b70bc60081df0fe3f87e3a96f8787897998b", + "language": "MATLAB", + "lines": 191, + "truncated": false, + "block": 9, + "row": 5312 + }, + { + "path": "nk_CalibrateProbabilities.m", + "sha256": "bfeb17654de58a6a00bb419d9021a0482d7ef9994b62ecd7e5087a5aee20f2eb", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 2969 + }, + { + "path": "nk_CatNodes.m", + "sha256": "6beb2d19f7a72a805328f9aeae97e9e47ae961389b204ac38628507ada29fdec", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3553 + }, + { + "path": "nk_CheckComprFile.m", + "sha256": "dd05b2f42cba1a552818f4b954555a38df2921c719273e51934b007849cd09a3", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 9, + "row": 4262 + }, + { + "path": "nk_CheckContainsImagingData.m", + "sha256": "b2f8f5d37235d808b42bd26b37e0c955352f6051f23f702c0652a3aa2afbcea9", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3091 + }, + { + "path": "nk_CheckFieldStatus.m", + "sha256": "c730ec8d16453d0193047b8c2fc3a849d6f808ddc404fdc8c2ed39e657572e3e", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 3924 + }, + { + "path": "nk_CheckFileExist.m", + "sha256": "79c54d43e5a3ca2def4a16272fb2f6574c3412d691d3e5c42c3ee7e1b38049fa", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3159 + }, + { + "path": "nk_CheckFixedFeatOrderStackInput.m", + "sha256": "18aad3110591e40f6d82e6aec30e8f0eb03b4db5a7ba4b3d3351784391331443", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 9, + "row": 3061 + }, + { + "path": "nk_CheckLoadFile.m", + "sha256": "9db58266aaae3a1ed23566b0f8840286c3aef26f94a5983c48f054f26eab9fc5", + "language": "MATLAB", + "lines": 209, + "truncated": false, + "block": 9, + "row": 5503 + }, + { + "path": "nk_CheckMatrixEmptyNonVarNonFinite.m", + "sha256": "2b17a136b52bd9d243b5f25365ea8d7960bd851431b8a0a691ade8546fd05621", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3118 + }, + { + "path": "nk_CheckNumCoresAvail.m", + "sha256": "af0736c857c601a1618510ef122a92cd20064a6640b5ab12c133cd312d103991", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 9, + "row": 3016 + }, + { + "path": "nk_CheckNumParam.m", + "sha256": "5b9145ee240e35747a02c40798c6f7a559983e849ddd9839a0e14e3902fc2296", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3362 + }, + { + "path": "nk_CheckSPMver.m", + "sha256": "a0a97f0f8bccd6a8bb4f310925f4bcc38533d696baa3e50c439fca4fb0e745c6", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 2987 + }, + { + "path": "nk_CheckW2Avail.m", + "sha256": "3fb92b0c16d064d6d8035bf47b65034e0bbe0804e9d1e3b3e22958cf050401d9", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3065 + }, + { + "path": "nk_CompGridFreq.m", + "sha256": "3cbbece6a69776ca1540d40dc47a950cb9e38891ed56d50a0e341428a5ec5852", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3203 + }, + { + "path": "nk_CompPlattProbOptimum.m", + "sha256": "8398bbc784cfa16f511f7833279dcd35958ed7aa254140ef36797b9622236a16", + "language": "MATLAB", + "lines": 126, + "truncated": false, + "block": 9, + "row": 5024 + }, + { + "path": "nk_CompareClass.m", + "sha256": "393e0de756ab41c383a0b9b8a3074cac74f6a73fdb796c4d1507548bd4e938bf", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4314 + }, + { + "path": "nk_CompareClassResample.m", + "sha256": "ce261383fe9281fc9fe2c9615d3d28e907aab5d2479294045a03fe794d909fe6", + "language": "MATLAB", + "lines": 134, + "truncated": false, + "block": 9, + "row": 4807 + }, + { + "path": "nk_CompatY.m", + "sha256": "6d4b43fb655b5e8867dda693fc27c98e4c71fb3b5c2869d45bb4ecfbfaca8d40", + "language": "MATLAB", + "lines": 205, + "truncated": false, + "block": 9, + "row": 5498 + }, + { + "path": "nk_ComputeCVR.m", + "sha256": "18519500e9e0bcd0076afee7ea951176d2ae92b225efbe30efe920772829704a", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3057 + }, + { + "path": "nk_ComputeEnsembleCasePropagationProbability.m", + "sha256": "e44b25b6be2813acf8220d2c7b045e642550e8d7e91b88eca574c67d765d8b9a", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3073 + }, + { + "path": "nk_ComputeMnMdPairWiseDiff.m", + "sha256": "ff5ada201cae7256dc3ceb9ac22890c30615f99f412a60c958846f24d98695b4", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3375 + }, + { + "path": "nk_ComputeSVMPmap.m", + "sha256": "73967378eed98b2bd1cbcf2529542ec0aa022e3226bb0804799f7d6a8a79c788", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3218 + }, + { + "path": "nk_ComputeTransNodePerformance.m", + "sha256": "53542496f7c24c1036fc771fab8056601d38719fe6718136f0d72dad9f1d7755", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 4412 + }, + { + "path": "nk_ConcatParamstr.m", + "sha256": "f4f5a96806e0fd1876903c848ab52c6d719ddcbc0b36c8aadd7476bd4ed7e09a", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 3758 + }, + { + "path": "nk_ConcatSubgroupPredictions.m", + "sha256": "526c5a5f2a5888d6aeb8949245e02552c725a7533384a6f86672ff55e852185e", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3710 + }, + { + "path": "nk_ConvProbabilities.m", + "sha256": "f5b8ae3f59c0ee2e5c0cefa655ca1deef374fba410f72bf054cc3b7cd59cb85b", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3224 + }, + { + "path": "nk_CopyY2Struct.m", + "sha256": "dd4b970e6736e7f33469ffa6bee634587fdbfbd6f1644446059ef88afcf0863d", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 9, + "row": 4312 + }, + { + "path": "nk_CorrectPredTails.m", + "sha256": "c149cf9b82909d74a92d242ce86158419ffb351d592110f3ed3b768337a4acfc", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4348 + }, + { + "path": "nk_CountUniqueOccurences.m", + "sha256": "2f200805682b3ca9c70a52b01d2f3de2757281833f1abeb3e0c7ac7576a4fdd9", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3537 + }, + { + "path": "nk_CountUniques.m", + "sha256": "c1c3fc2fc20cf5a4f6ccd7616b9e71895905dc885eff0842cf3f7dd71bb3e218", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3442 + }, + { + "path": "nk_CreateSubSets.m", + "sha256": "d24cfd70e61d551f07a6afb4587af57accd05dfbb745a8f648e4461241cbb4f8", + "language": "MATLAB", + "lines": 404, + "truncated": false, + "block": 9, + "row": 5697 + }, + { + "path": "nk_DecideClassMem.m", + "sha256": "cbdcbb6fd03c8dd809b59419992fe1910cf0f2f5d40eb5819f431df97d28e05a", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 9, + "row": 4182 + }, + { + "path": "nk_DefineCaseListIntegrity.m", + "sha256": "5e273fcc3df9dc4545f8dcd5de7344edec2dd61363443dff82e9e5480219fcdd", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 9, + "row": 4229 + }, + { + "path": "nk_DefineCaseNames2.m", + "sha256": "9902ccb2bc93e759d39510811417bc58ba0a74b66959fe924c5afabda4073f8d", + "language": "MATLAB", + "lines": 108, + "truncated": false, + "block": 9, + "row": 4929 + }, + { + "path": "nk_DefineFiles.m", + "sha256": "c9582f00e9caa52dc3f94d4d57e3d27b358875986044ffef8da7b00bd404fdc6", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 4123 + }, + { + "path": "nk_DefineFusionModeParams.m", + "sha256": "8c1642b6e1f1d99f9556b602569acdb8b9eef9354700373a5e2ad15ddbf402fa", + "language": "MATLAB", + "lines": 134, + "truncated": false, + "block": 9, + "row": 4922 + }, + { + "path": "nk_DefineGroups.m", + "sha256": "68ccf5bfae5e6b872278b82b707ebfb9e320d4534daf2216ac3a738be14529f1", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3800 + }, + { + "path": "nk_DefineLIBSVMfun.m", + "sha256": "462a2c2c69de344d1dd658079c18cfad778015fcb44b0f271da00725891e0fe2", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3222 + }, + { + "path": "nk_DefineLabels.m", + "sha256": "302d0fa3b2601153acaa24eb7984c7f97398bcb293cbb4debf93e1284956c164", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4084 + }, + { + "path": "nk_DefineMLParamStr.m", + "sha256": "2026b74a98ccbaeafb7ccda8b59f8872cba3026b81b8ec4080d4751d9983b91b", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3055 + }, + { + "path": "nk_DefineModeflag.m", + "sha256": "0c4d8b75e8a7f40aee90cd4432282de45c01a8bd697da4d18d6da1257f759ac1", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 9, + "row": 3251 + }, + { + "path": "nk_DirSelector.m", + "sha256": "11144b339516fdb2d302f4338d0a48e7010f4b6a304cd7733f8bfd07aa73f9b7", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3189 + }, + { + "path": "nk_EqualizeHisto.m", + "sha256": "750a6e2f2549ecb641ff4e73dbf3b1c22671fe7e7662521764641dc00b48ad9f", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 9, + "row": 4253 + }, + { + "path": "nk_ExtrIndVol.m", + "sha256": "9b2fb668c1f56089e303b389ca57bc8dd7c356362d5401d72eaba2203b07a114", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3082 + }, + { + "path": "nk_ExtractFeatures.m", + "sha256": "2990c7cf6c8b415f5a141dfeca25df3c1fcffb07d92518642e6a8536b087d57b", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 9, + "row": 3894 + }, + { + "path": "nk_ExtractID.m", + "sha256": "eb45150e12f59e0d23f81dbe1ae246e39b1e90b21ba66fee86e817d53c655d78", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 2993 + }, + { + "path": "nk_ExtractPredictions.m", + "sha256": "736d7bdeb689ff725076a7e2f161a4f3b18475988a1a8b1ecc681b9611ffbe74", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 9, + "row": 4653 + }, + { + "path": "nk_FSreslice.m", + "sha256": "e39e1b32119c830cdfd1a296b949bf2f48240db1ccfcb472053efcff9db0a9b3", + "language": "MATLAB", + "lines": 157, + "truncated": false, + "block": 9, + "row": 4994 + }, + { + "path": "nk_FigSetup2.m", + "sha256": "909a69d2f43253290cfea13c31f06a6762b0c19a6a8c2bfb4442aeec75c6672d", + "language": "MATLAB", + "lines": 181, + "truncated": false, + "block": 9, + "row": 4932 + }, + { + "path": "nk_FileSelector.m", + "sha256": "214c8e438754af895a38423a5d9fda38cbe328a6069e98a15a94db75c6bc28a3", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 9, + "row": 4772 + }, + { + "path": "nk_FormatNicely.m", + "sha256": "6a051ac08362e94cf41063d1b6d2b356f19c19951eaa36c6c541a2fcc320e900", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3281 + }, + { + "path": "nk_GenConfMatrix.m", + "sha256": "bd8485c4d8f0da038ef61b0b3c559c1a7065def92bb8ca24d37efbd254528d19", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3030 + }, + { + "path": "nk_GenGridAct_batch.m", + "sha256": "5755425c727fa0305380a916cf5b275b6c9dfd931897b1f3ed1c53c5ad5f36d9", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3869 + }, + { + "path": "nk_GenPermMatrix.m", + "sha256": "7e49ff08d549f7bf0df9ce694d0189251941b31ae215f7c0714324cf4f063335", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 4288 + }, + { + "path": "nk_GenTemplParam.m", + "sha256": "364d00731a5bcb66c78e3ae9eef077931b7c9c4da69d8cff6f850e4efbc7ab1c", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 9, + "row": 4435 + }, + { + "path": "nk_GenerateNMFilePath.m", + "sha256": "09d0958ae3b7479b4525c556bb0be45fae69ebc8e48c8e4bca88b9f64e044287", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 9, + "row": 3319 + }, + { + "path": "nk_GetAlgoWeightVec.m", + "sha256": "225462a632b836274b16b14a205010230de92327ef7ebb884fcf319d5c2196aa", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 9, + "row": 4366 + }, + { + "path": "nk_GetAnalysisInfo.m", + "sha256": "241dff260d80245f97bfecb7f93628fa3267810b5b0ae9fdfce7598a91ae6836", + "language": "MATLAB", + "lines": 140, + "truncated": false, + "block": 9, + "row": 5049 + }, + { + "path": "nk_GetAnalysisStatus.m", + "sha256": "88182d21166c1d2f94e53ba828a18629fc44d7f21e19717533b9d0d74793d36b", + "language": "MATLAB", + "lines": 132, + "truncated": false, + "block": 9, + "row": 5084 + }, + { + "path": "nk_GetCV2EnsembleDims.m", + "sha256": "fd671eef214bd3f7bd2ad8799c8f7ac4aa99f1a6f02306d18b246eae6079a649", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3096 + }, + { + "path": "nk_GetLabelDim.m", + "sha256": "fa8ed12cc175aa2b9748b90545bda80aaa45ef876609b09d80d67be5130d70ca", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 2965 + }, + { + "path": "nk_GetModelParams2.m", + "sha256": "78dda89ba1f927d50c038d3bc7d394e2a0d11e8e80fd851dcc9146f53c716700", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3821 + }, + { + "path": "nk_GetNMStatus.m", + "sha256": "307674d63e2c595d320f70839000fc500e487b4919a0c31a5fb4fdb5efc6be0f", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 4119 + }, + { + "path": "nk_GetOOCVInfo.m", + "sha256": "9a00caf1a290234a35ab81dead236835400d09bed3f41c2aef0843fedf481f10", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 9, + "row": 4957 + }, + { + "path": "nk_GetParamDescription2.m", + "sha256": "565047cd13b1c8f074473d447305fcf3d807570d4f076594ec982bf98bb78d7c", + "language": "MATLAB", + "lines": 1418, + "truncated": false, + "block": 9, + "row": 5995 + }, + { + "path": "nk_GetPrimalW.m", + "sha256": "cc5e4911c4710fbe7ab694dfcc8522654877f44de29010eae2b5e23892de1657", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3270 + }, + { + "path": "nk_GetScaleYAxisLabel.m", + "sha256": "0b616d62d0394e4b6babe1dabea41ba67ce85af95a2f438e6244b4c73762f4bb", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 9, + "row": 4652 + }, + { + "path": "nk_GetTestParam.m", + "sha256": "a0550f83fefae9484af83bab85a3fb0a8363fd04a312af75ba9d43719331f568", + "language": "MATLAB", + "lines": 160, + "truncated": false, + "block": 9, + "row": 5109 + }, + { + "path": "nk_GetVariateDescription.m", + "sha256": "4d2ec6998223144a7ec5a4a8658dbf9f9b217a4a0ac48332748907eb98ae0e63", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 4054 + }, + { + "path": "nk_GridSearchEnsembleAdaBoost.m", + "sha256": "7663ffe92dbd215f943409fcfbdce46e6c9aa54d9c984b0cf968ab6af6454a29", + "language": "MATLAB", + "lines": 192, + "truncated": false, + "block": 9, + "row": 5415 + }, + { + "path": "nk_INDEPpartition.m", + "sha256": "bbef0850b6aa8549614d7715fa0c981f0a802cf48640050494a1519a00b75eb2", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 4055 + }, + { + "path": "nk_ImagingInit.m", + "sha256": "7f8c8f6406ffd17fac340272061324a25ce8dd7bbb58a052b5634267bbcef187", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 9, + "row": 4283 + }, + { + "path": "nk_InitAnalysisPrep.m", + "sha256": "fa4d003848edb22fea3f7397be8dea87d1a77484090a747bc917a52981471b52", + "language": "MATLAB", + "lines": 222, + "truncated": false, + "block": 9, + "row": 5602 + }, + { + "path": "nk_InitNMwindowColors.m", + "sha256": "209013f6dddb9cd1c3fe97e972ea7ff0b0b9abad1bc7e8751d489e804dece591", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3380 + }, + { + "path": "nk_Initialize.m", + "sha256": "c156ea7c8c8b61113619182d88265f7c4ffcf67483f70aaf703e7641555258fb", + "language": "MATLAB", + "lines": 302, + "truncated": false, + "block": 9, + "row": 5565 + }, + { + "path": "nk_LOOpartition.m", + "sha256": "d82460dcc28e2a1638eaf871b67039e84a102294d872758c6df8dc0e039bfefc", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3378 + }, + { + "path": "nk_LabelTransform.m", + "sha256": "0cc31ebf625308eab8c4422539adb2f87aa147f9d9273ca545d9e15596fc1eb7", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3689 + }, + { + "path": "nk_LoadLinkedData.m", + "sha256": "4ea0a0afb00a5bc18d31ddc450c78ad7a217490b2eadf22ab40fd6072f298e46", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 9, + "row": 3744 + }, + { + "path": "nk_MLOptimizerMeta.m", + "sha256": "7404c203bce6e81f7dbc3f9a65af49599135a08d904e49d91433e746a6b47d90", + "language": "MATLAB", + "lines": 120, + "truncated": false, + "block": 9, + "row": 5197 + }, + { + "path": "nk_MLOptimizerPrep.m", + "sha256": "4a91d5cad307134f7b35bca804abf2cb9f39216ea7d7c4ea6e601c76f71f9672", + "language": "MATLAB", + "lines": 529, + "truncated": false, + "block": 9, + "row": 5822 + }, + { + "path": "nk_MLOptimizer_ExtractDimMat.m", + "sha256": "52a4093aa43607b0062859d390e3f9d4b33d84a1c37f1cfad2152e4674c61ee1", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 9, + "row": 4747 + }, + { + "path": "nk_MakeCrossFolds.m", + "sha256": "12c3059f358f071fab6951ec9afa89ae4585b84ecdd38e5a67ad3edaa31bd785", + "language": "MATLAB", + "lines": 506, + "truncated": false, + "block": 9, + "row": 5791 + }, + { + "path": "nk_MakeDummyVariables.m", + "sha256": "947c284a7b237d46b161220749a63cd9fffeb68d2703611996da352035f7d6d3", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3469 + }, + { + "path": "nk_MakeRVMTargetMatrix.m", + "sha256": "87768f1c36ece4d9f266f096b883e9de16f6e6435b4531d0dce122503401d90b", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3210 + }, + { + "path": "nk_ManageDataContainers.m", + "sha256": "4734f15dae0b9f63cdaa68b4887016c303d488863c15095730dd69525e3ce784", + "language": "MATLAB", + "lines": 372, + "truncated": false, + "block": 9, + "row": 5662 + }, + { + "path": "nk_ManageNanCases.m", + "sha256": "e26f49432bdf4081e53ab07a6096ab1c70539d7794183466b1868fa592de4984", + "language": "MATLAB", + "lines": 77, + "truncated": false, + "block": 9, + "row": 4493 + }, + { + "path": "nk_MatchID.m", + "sha256": "4ac493759b595430552fd6e9d1d367f09331c46423dceaff593d818d24f2b4d2", + "language": "MATLAB", + "lines": 194, + "truncated": false, + "block": 9, + "row": 5212 + }, + { + "path": "nk_ModelComplexityParams.m", + "sha256": "526cab86c9bb403e7a85ad5ac06f5b6b0609c97d438aa4df8bba023f8c3b9a68", + "language": "MATLAB", + "lines": 101, + "truncated": false, + "block": 9, + "row": 4752 + }, + { + "path": "nk_Move2OOCV.m", + "sha256": "35bd02644ae4785b3f384bf1dd14a5e1e165952a356eb5096e53caac5ca8a0f9", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 9, + "row": 3922 + }, + { + "path": "nk_MultiBinBind.m", + "sha256": "ebf2b8735c55105632e2b2618731712cbaee5200e410430ac88c577a8827e598", + "language": "MATLAB", + "lines": 132, + "truncated": false, + "block": 9, + "row": 5228 + }, + { + "path": "nk_MultiClassAssessConfMatrix.m", + "sha256": "20764be5bc6a9b86f8c965d23b24a16fd2a7f1d9f469d880a348ac15f2706be2", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 9, + "row": 4032 + }, + { + "path": "nk_MultiDecideDAG.m", + "sha256": "10c3dd654eb9d8933de50438f6c628d6942edad160a51979909b348317e4b708", + "language": "MATLAB", + "lines": 98, + "truncated": false, + "block": 9, + "row": 4546 + }, + { + "path": "nk_MultiDecideErrorCorrOutCodes.m", + "sha256": "7b733ccd4aade2dd8ddf55ca1feb8567b9ffd5fc0a520b316eacabb57c074537", + "language": "MATLAB", + "lines": 147, + "truncated": false, + "block": 9, + "row": 4877 + }, + { + "path": "nk_MultiDecideHierarchOneVsOne.m", + "sha256": "0b5ca18714e0b20941c959fff8b542d63ae786d3779e22398e61b8f335f3cf0a", + "language": "MATLAB", + "lines": 117, + "truncated": false, + "block": 9, + "row": 4750 + }, + { + "path": "nk_MultiDecideMaxWins.m", + "sha256": "0b583518d5d535faf3fdb52d62f29439aa894ea6187d133b298d1ba50746b81f", + "language": "MATLAB", + "lines": 193, + "truncated": false, + "block": 9, + "row": 5349 + }, + { + "path": "nk_MultiDecideMaxWinsNegTiesOpt.m", + "sha256": "3f3a4c460e548fd2b6bca060200dd2ff02c38fe48722762e9360ea63c51727d8", + "language": "MATLAB", + "lines": 224, + "truncated": false, + "block": 9, + "row": 5393 + }, + { + "path": "nk_MultiPerfComp.m", + "sha256": "6dfe85cd166507f206b7bf02a09ea15b42cd261e235bd4d04dc83e5ab7e9e257", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 9, + "row": 4171 + }, + { + "path": "nk_NMLogFileManager.m", + "sha256": "3082dc16caf875326a81e0330ddcfd29adabd33bc803b68688c6a8cd50fcbaa6", + "language": "MATLAB", + "lines": 99, + "truncated": false, + "block": 9, + "row": 5037 + }, + { + "path": "nk_OOCV.m", + "sha256": "b2bdfaf803086f9e3a56ce804b21d6966bb4d1ba8a0f2130f6f23a49b4617a8a", + "language": "MATLAB", + "lines": 917, + "truncated": false, + "block": 9, + "row": 5974 + }, + { + "path": "nk_OOCVMeta.m", + "sha256": "d7acf167d325d0532a934f6a394f427c40374aaf6159225841ffa88dfa97dfd7", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 4146 + }, + { + "path": "nk_OOCVPrep.m", + "sha256": "fc019cdc72aed60ea23cf86f69fb6f0dd781e80d15ef064f26bef690caadb2bb", + "language": "MATLAB", + "lines": 459, + "truncated": false, + "block": 9, + "row": 5795 + }, + { + "path": "nk_OOCVPrepMulti.m", + "sha256": "0ef1a422ddf1158d2648ede3c380f9bef8288ea7140098572d86045e6a8535ff", + "language": "MATLAB", + "lines": 418, + "truncated": false, + "block": 9, + "row": 5751 + }, + { + "path": "nk_OneVsAll.m", + "sha256": "fdacbb92bc6c3cd04c64156fb7fa345f45a26978aa504f374bbe2dc5129bc4a1", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 9, + "row": 3184 + }, + { + "path": "nk_OneVsOne.m", + "sha256": "cbff755f3cbb199484fcfb969776361ef92fa0ba87cce940b588d9e4303c8072", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3396 + }, + { + "path": "nk_PTfromR.m", + "sha256": "5e08c8b552f5014e2f357cfb17a4dfd4d6161fe928886f4f28dc27b5f9452232", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3122 + }, + { + "path": "nk_PerfInitSpatial.m", + "sha256": "7710d3b7a5ead7b45fe671640b0a480a439326f2f38497aef4008131c79e555d", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 9, + "row": 4166 + }, + { + "path": "nk_PerfResampleImages.m", + "sha256": "627e28770d865f9dcb7a85630ed285fb44cdef674178545e84000330a5e4b5c9", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4249 + }, + { + "path": "nk_PermInd2.m", + "sha256": "7ec60285d3526060f9f0564848626472c224c19e45c5d545b2c4f3327e6ed89e", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 9, + "row": 4513 + }, + { + "path": "nk_PermPrep.m", + "sha256": "fb9f58e25139792c1b8037c04b7e4bb7d759cac968fc6b401ca28c7dee62922b", + "language": "MATLAB", + "lines": 93, + "truncated": false, + "block": 9, + "row": 4794 + }, + { + "path": "nk_PermX.m", + "sha256": "b1021ffc3039336e84f26987b45d43a361545d49d5aac56bad17c630ed74427a", + "language": "MATLAB", + "lines": 466, + "truncated": false, + "block": 9, + "row": 5752 + }, + { + "path": "nk_PredictData.m", + "sha256": "73ca610467b414e02e00e63f7af0ecb9f39069258b7a83729696487f748c6772", + "language": "MATLAB", + "lines": 407, + "truncated": false, + "block": 9, + "row": 5715 + }, + { + "path": "nk_PrepMLParams.m", + "sha256": "3d051ad317da3d31fc24bbc27f03d2c7e699d8527b3cce1bf01583f5d02c402b", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 9, + "row": 4530 + }, + { + "path": "nk_PrepPreprocParams.m", + "sha256": "a60cb53789d57a16706e654e39d4776e2134ab253dfbb665efbd713e7da34bf8", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 4043 + }, + { + "path": "nk_PrintLogo.m", + "sha256": "b1ddc67f92820c0b53002873b3496fdc25334e3d85e996f46f629c962c390660", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 9, + "row": 4064 + }, + { + "path": "nk_PrintWs.m", + "sha256": "b3caafbea5c6c2eae8c4773ecbf15f39e791bdd37c590d6cbc60b8bbf9fe739b", + "language": "MATLAB", + "lines": 159, + "truncated": false, + "block": 9, + "row": 5190 + }, + { + "path": "nk_Range.m", + "sha256": "d7eca73dd05c46273acfdb26784004c0d52b9a8451baab5c32cd75d3548c1d17", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 2963 + }, + { + "path": "nk_ReadMaskIndVol.m", + "sha256": "15824f48122e2d7fa14be91b9988df6ab31f812cb66a1db1ab67046f50eecf77", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3877 + }, + { + "path": "nk_ReadVol2Vec.m", + "sha256": "33507ddfddd2350ad64f79312c3f5e86e632e4908ae7457956936a138efb8d67", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 4167 + }, + { + "path": "nk_RemapData.m", + "sha256": "516759b29122c7b50396695d7e47f4761531114d87898a3b773676f6efe64eab", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 9, + "row": 2976 + }, + { + "path": "nk_RenormalizeScores.m", + "sha256": "1b7f42dbbe8bca0298dcb47ad8bd471a9f9fd252b5626fee46a07246aa28b0ce", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3063 + }, + { + "path": "nk_ReorderComponents.m", + "sha256": "0c1cd1bfc20e21cad78b22c64230edcb2248198df6489ad4c7510874af04038c", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3588 + }, + { + "path": "nk_ResizeImg.m", + "sha256": "b197ec94bc203bdc248c75b17132b26fa7fc3705a3772e17521dc4d4e3f1bfb9", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 4441 + }, + { + "path": "nk_ReturnActionParam.m", + "sha256": "b7cc611799e8d2f8ad1e6802276439af695b7428da9f7ad010a0d7795d07e771", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3023 + }, + { + "path": "nk_ReturnAtOptPos.m", + "sha256": "607b9348147459eb6819c43805c03f0faba74255ec523a5c48f8badbd84ae7cb", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 9, + "row": 3929 + }, + { + "path": "nk_ReturnEvalOperator.m", + "sha256": "b64d1510a9d51a1fcac538587bc2dda00845d49181445a3f7474ca4837434e85", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 9, + "row": 3354 + }, + { + "path": "nk_ReturnParam.m", + "sha256": "be2703317e5c5e45bb89b9dffbf663231cfd8443c6ffaac9107fe57362efe5da", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 9, + "row": 3236 + }, + { + "path": "nk_ReturnParamChain.m", + "sha256": "42e41f59c07b5181bdf16cd939d924878d3c53cf7f9581941ae64f57f5723629", + "language": "MATLAB", + "lines": 89, + "truncated": false, + "block": 9, + "row": 4742 + }, + { + "path": "nk_ReturnSubSpaces.m", + "sha256": "bf5f86f13b75cd5918e5f053d113d6572c0664fb8a53f9d25a899c551135085c", + "language": "MATLAB", + "lines": 120, + "truncated": false, + "block": 9, + "row": 4934 + }, + { + "path": "nk_SA.m", + "sha256": "2be143947eed66a33aa485ca84635509a88a4c1a23e5e35ef8e8a2d784f6a0aa", + "language": "MATLAB", + "lines": 575, + "truncated": false, + "block": 9, + "row": 5849 + }, + { + "path": "nk_ScopeCellRetDummyFromTable.m", + "sha256": "ec375d7e7a32c836794d04cb82c53577f92314e7bdb0be1503a3dfb4836c9d25", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 4028 + }, + { + "path": "nk_SelectAnalysis.m", + "sha256": "1bdcc6fb4c25e9abe860017c43e7fbb9e63a9aca6b2574e038f8cb46ed4199db", + "language": "MATLAB", + "lines": 453, + "truncated": false, + "block": 9, + "row": 5755 + }, + { + "path": "nk_SelectCovariateIndex.m", + "sha256": "7aeccb9495ca5f6d3de6a3aa063ebf059979f1a5f91869096be2cd1fbf80f9d2", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3373 + }, + { + "path": "nk_SelectOOCVdata.m", + "sha256": "1d6dac2107c70995c03b0da695c13cde7503ede9f89f87d0f802b547457040e4", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 9, + "row": 3812 + }, + { + "path": "nk_SelectVariateIndex.m", + "sha256": "4de9e34cb5ea8c6d6b40a8531ab10bcd2e90d27e715d340f721d086e7beaa09b", + "language": "MATLAB", + "lines": 131, + "truncated": false, + "block": 9, + "row": 5346 + }, + { + "path": "nk_SetParamChain.m", + "sha256": "232e03f0d941f510195e2f6d43c08f7915d4ca00ce82eedb071b1170460b918a", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 4120 + }, + { + "path": "nk_SetupGlobVarsForLIBSVM.m", + "sha256": "0df3e81bd25fb3f9e85a5916b33fce89e6207f602b42b7428c998cfbe17c4f50", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3399 + }, + { + "path": "nk_SetupGlobalVariables.m", + "sha256": "b086a9babcf202152a984844999bf03863d57fc1e7d5e69f305185133648ab76", + "language": "MATLAB", + "lines": 495, + "truncated": false, + "block": 9, + "row": 5707 + }, + { + "path": "nk_SwapY_OOCV.m", + "sha256": "4a0735e033b12ac51b39b47c6767f5c39e0aca85e39467bde95e6cc0cd8dc4e5", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 9, + "row": 3932 + }, + { + "path": "nk_ThreshImages.m", + "sha256": "8e2413fc146b836751d062e255c89e6bb6337e4d1623044435f87400c1d713f4", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3261 + }, + { + "path": "nk_ThreshWriteImg.m", + "sha256": "38769639f2a7ceb70e4e41034b6578ac094fecfc0f6cffcecd7076f13a4a26e7", + "language": "MATLAB", + "lines": 122, + "truncated": false, + "block": 9, + "row": 4776 + }, + { + "path": "nk_Threshold.m", + "sha256": "b107c9c0facb97f6ac7a157dac7c80a29000854aa8837268b59f4f73a123003f", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3688 + }, + { + "path": "nk_UpdateRootPaths.m", + "sha256": "d924108ce1060eadc6db82c58e0e24e21275e13377ad4369fadd6665b03213a8", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 9, + "row": 4417 + }, + { + "path": "nk_Utilities.m", + "sha256": "42bc9dfe09b3562b71a516786bd22dbf5c647aa4a87dc6439cfeedcf944b74eb", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 9, + "row": 4402 + }, + { + "path": "nk_VisModels.m", + "sha256": "727dadd6c4265beffbd9dd932373dc58443a97e25fb0148a56ef08624ee945c1", + "language": "MATLAB", + "lines": 1416, + "truncated": false, + "block": 9, + "row": 6009 + }, + { + "path": "nk_VisModelsPrep.m", + "sha256": "ff1dbd8fb63e333e89095076d654b8dc2778a303fc607c9e2b1fbf3dda192d63", + "language": "MATLAB", + "lines": 375, + "truncated": false, + "block": 9, + "row": 5723 + }, + { + "path": "nk_VisModels_ExtraLabels.m", + "sha256": "94aae2c466ee90ce8ef020e90923e4467ff5ae9261de2db910d86b96d94dcfdc", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 4143 + }, + { + "path": "nk_VisNonImg.m", + "sha256": "27cb04fdc23aef9ceae6f7bcf15403012bd20e90b76f325b52e189dc3aca1b66", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 9, + "row": 4304 + }, + { + "path": "nk_VisSV.m", + "sha256": "0d31e6ec1d6d7ceb08782918d85b56b5411494334ec9063b9e2f01c34baeb959", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 9, + "row": 4391 + }, + { + "path": "nk_VisSmooth.m", + "sha256": "9fb3942e0857b6447069b36434bc444377cdac4a44f29a320767fdc4005d5eaf", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3604 + }, + { + "path": "nk_VisXHelper.m", + "sha256": "d431fe893c9ab8b84688e97d4d7d50aa15d5658ea1da1b1629f44ec0a10ea8d0", + "language": "MATLAB", + "lines": 173, + "truncated": false, + "block": 9, + "row": 5543 + }, + { + "path": "nk_VisXPermHelper.m", + "sha256": "2c5094d685844c0a237d987b8316b3d07a4e39dcfb1cf49bb0b802d1c83a68f9", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3308 + }, + { + "path": "nk_VisXPermY.m", + "sha256": "b2de41cdedaae75990d0d86aaa9994a76763389e460941463ac667f08d521854", + "language": "MATLAB", + "lines": 112, + "truncated": false, + "block": 9, + "row": 4828 + }, + { + "path": "nk_VisXWeight.m", + "sha256": "3212b29938db3a28085721f2ccaa9c1dfbc26505a22cdaac59a773e10bae5d8a", + "language": "MATLAB", + "lines": 330, + "truncated": false, + "block": 9, + "row": 5641 + }, + { + "path": "nk_Vol2Vec.m", + "sha256": "4fdf44b37b85926e4d928b54f462890c8edde378fb8245050c7746c88628db04", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 9, + "row": 3066 + }, + { + "path": "nk_Write2Atlas.m", + "sha256": "addd5750becb9700556e155adc271d17cc6b9effae9504149f6d10b2fca40d01", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3287 + }, + { + "path": "nk_WriteVol.m", + "sha256": "91edb54c0765e836409ddaa9dac1b52e59d5f212ede5e8230cbfc9097d5a6f26", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 9, + "row": 4496 + }, + { + "path": "nk_cellcat.m", + "sha256": "d6d07a9b1060f0536317b231da601c6206c49443206e2b921d8185a14f06893b", + "language": "MATLAB", + "lines": 93, + "truncated": false, + "block": 9, + "row": 4578 + }, + { + "path": "nk_input.m", + "sha256": "538a2ddb484c2b67b9edee7f0494ef82e6715a62e94419fff8f35ca2ee7f3098", + "language": "MATLAB", + "lines": 2097, + "truncated": false, + "block": 9, + "row": 6001 + }, + { + "path": "nk_kurtosis.m", + "sha256": "9ed69e1dcf2378f299656cef6093a056c30e7a9547c3bca10de18a344d5fa0d8", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 9, + "row": 4294 + }, + { + "path": "nk_mahalanobis.m", + "sha256": "ef2e28f790257edb8ddc32ec73bd5dcf3b8860a36ea61cf6fd1dae77af1d1863", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 4575 + }, + { + "path": "nk_make.m", + "sha256": "6e23e991edda0d28db9ef73b7b0be96627c2dd05301f399fe0a52573500cafda", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3644 + }, + { + "path": "nk_mapY2Struct.m", + "sha256": "7e0b431563420516b46a37b0422f7ac2f1bedc686b3d7be78ab633ccf052a7f4", + "language": "MATLAB", + "lines": 127, + "truncated": false, + "block": 9, + "row": 5222 + }, + { + "path": "nk_orthviews.m", + "sha256": "9cb5c5a1c21702d35cee0b6eca726bceafb9a149003aae75a0ff7a788959f7c0", + "language": "MATLAB", + "lines": 1944, + "truncated": false, + "block": 9, + "row": 5991 + }, + { + "path": "nk_skewness.m", + "sha256": "50f2da5bec924d97ccaf0eb1fe2ecacaeb6f0bc9042c2ed3c180fd8b086b8a60", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 9, + "row": 4268 + }, + { + "path": "nk_smooth.m", + "sha256": "e30c4d687e83a2aebba61bb1d044bb7ccb43c396f254508cd39ecdf9aa82f8af", + "language": "MATLAB", + "lines": 103, + "truncated": false, + "block": 9, + "row": 4786 + }, + { + "path": "nk_strsplit.m", + "sha256": "6e712cddc8230f2075f594478e25df40e1e028fe63a67128855921813b166b63", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 9, + "row": 4024 + }, + { + "path": "nm.m", + "sha256": "9ac7167c20965c02ed4abb27dbfafb49415fa78d4627c670fd40365c02a07ade", + "language": "MATLAB", + "lines": 500, + "truncated": false, + "block": 9, + "row": 5772 + }, + { + "path": "percentile.m", + "sha256": "88fc21b15200030b576acda0c8afd31bf3f8eeb433e12504402356b9de4ecc8f", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3726 + }, + { + "path": "perfcurve2.m", + "sha256": "109d5fa0823df709ce8258e212230819af754ef3e0f2e189bc38f032cfda8058", + "language": "MATLAB", + "lines": 1413, + "truncated": false, + "block": 9, + "row": 5969 + }, + { + "path": "preproc/FastICA_25/Contents.m", + "sha256": "1207db9b7bc8d84f4165bc6ad6df918cc6a1b6b01f83fd91df615508b9fb65be", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3859 + }, + { + "path": "preproc/FastICA_25/demosig.m", + "sha256": "75add67690a02b4f5e56a996108149361ca6a3e56a112cc8d2d164d20f0425c7", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3471 + }, + { + "path": "preproc/FastICA_25/dispsig.m", + "sha256": "9d81bbc9dacfc0d74acf6a3ef1130b00a4689a61f4ba877c49543de9224fdcb9", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3174 + }, + { + "path": "preproc/FastICA_25/fastica.m", + "sha256": "483d273388a872781bb622f34d22a2f5bd9569fb3a0a35d07d4f8829bf205bbc", + "language": "MATLAB", + "lines": 521, + "truncated": false, + "block": 9, + "row": 5753 + }, + { + "path": "preproc/FastICA_25/fasticag.m", + "sha256": "41e6cd3e6330b46193c8f1528d51963b12a5dea467be0674bddf689812055f50", + "language": "MATLAB", + "lines": 667, + "truncated": false, + "block": 9, + "row": 5764 + }, + { + "path": "preproc/FastICA_25/fpica.m", + "sha256": "c21f6e8dff0574f56b82d3760a8b2ace0501d40bbe039116d13ca3bcca06b421", + "language": "MATLAB", + "lines": 905, + "truncated": false, + "block": 9, + "row": 5863 + }, + { + "path": "preproc/FastICA_25/gui_adv.m", + "sha256": "e514391f8a00748e43939249d3052b5f0248f8253e921bd2f1f6edbfc89704fe", + "language": "MATLAB", + "lines": 441, + "truncated": false, + "block": 9, + "row": 5644 + }, + { + "path": "preproc/FastICA_25/gui_advc.m", + "sha256": "7fa3ab193d814eda7fa9e398902cf88cd45bb9f55819433bceec81a553a6f819", + "language": "MATLAB", + "lines": 256, + "truncated": false, + "block": 9, + "row": 5363 + }, + { + "path": "preproc/FastICA_25/gui_cb.m", + "sha256": "9d740ea7a174010d23b348eac815529b6d937a63714176e99b63afcf4b438f79", + "language": "MATLAB", + "lines": 581, + "truncated": false, + "block": 9, + "row": 5766 + }, + { + "path": "preproc/FastICA_25/gui_cg.m", + "sha256": "40ec0c9928afb33a10acb14ae3047b05ed167cdc3ea6cee048a05d506438eebe", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 9, + "row": 4487 + }, + { + "path": "preproc/FastICA_25/gui_help.m", + "sha256": "342aca26d4ad2381bdf5ab26fab1c9d7d3ea6cb3e0e932f638ebee2ee02e65d5", + "language": "MATLAB", + "lines": 224, + "truncated": false, + "block": 9, + "row": 5675 + }, + { + "path": "preproc/FastICA_25/gui_l.m", + "sha256": "e8d35059474cd3ffdac2e30c9ad2156055b8cc1b672c245a118addd6a5b44ae8", + "language": "MATLAB", + "lines": 180, + "truncated": false, + "block": 9, + "row": 5057 + }, + { + "path": "preproc/FastICA_25/gui_lc.m", + "sha256": "41e90f43a496412d6f0c75c8b2fa8110c8f6981112a48db8d392cce44dbf6382", + "language": "MATLAB", + "lines": 112, + "truncated": false, + "block": 9, + "row": 4762 + }, + { + "path": "preproc/FastICA_25/gui_s.m", + "sha256": "b8def38a2b7ad73504f098ad1e5019aa8a4458aa31832ff876d41792dd92afc0", + "language": "MATLAB", + "lines": 177, + "truncated": false, + "block": 9, + "row": 5048 + }, + { + "path": "preproc/FastICA_25/gui_sc.m", + "sha256": "d528676d7008810b2fe6c0e4c9796abc75e2dd0ab02202f30c83bd29976c6b6a", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 9, + "row": 4387 + }, + { + "path": "preproc/FastICA_25/icaplot.m", + "sha256": "7c6695f309298279e9f7b3d4359f9657e2d9f3256803196e35cbdf7671cb78e1", + "language": "MATLAB", + "lines": 397, + "truncated": false, + "block": 9, + "row": 5648 + }, + { + "path": "preproc/FastICA_25/pcamat.m", + "sha256": "a9ae7e013b90292636927ec4417e8fb94528fe5ec49c381d931552a8648033da", + "language": "MATLAB", + "lines": 358, + "truncated": false, + "block": 9, + "row": 5605 + }, + { + "path": "preproc/FastICA_25/remmean.m", + "sha256": "d8fe01b316744fc303c26c5aa13ee21a007ee98c44d8ae5ec1aa86310acd4ff0", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3220 + }, + { + "path": "preproc/FastICA_25/whitenv.m", + "sha256": "95063d7ecd3b31b2cf30635af2907241f6bea10b3afa55ce0a8585563adbe535", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 4529 + }, + { + "path": "preproc/NMF_Library/auxiliary/add_outlier.m", + "sha256": "e5358af043f6be325d3784fff8755868fdb99ddeb60cd99e17fb05601ddba26c", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3241 + }, + { + "path": "preproc/NMF_Library/auxiliary/add_outlier_new.m", + "sha256": "82b6134bfffe7b9beb9eb82ec31da7cf8fe4f256a2d6480b23f6b7aa9038825c", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3320 + }, + { + "path": "preproc/NMF_Library/auxiliary/calc_mse.m", + "sha256": "7784a89ba4e72ed4f06ce7c178f82c3fe08ab79778a4ddc9ebfa8025c69f18e7", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 9, + "row": 2961 + }, + { + "path": "preproc/NMF_Library/auxiliary/calc_nls_nmf.m", + "sha256": "2244246d8fc6a8a8601dbdc37da340a7aac076fe13907dd479bbdc5dfeeb2edf", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 6, + "row": 2757 + }, + { + "path": "preproc/NMF_Library/auxiliary/calc_psnr.m", + "sha256": "adf0ed8d24274a97dae525ef22945b53659b60809e30404db73219e2606b4874", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 9, + "row": 3025 + }, + { + "path": "preproc/NMF_Library/auxiliary/clustering_evaluator/MutualInfo.m", + "sha256": "f157b6921290378bfad0346c08c048e509559d4d25bfca5da65d54d3816762af", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 6, + "row": 7138 + }, + { + "path": "preproc/NMF_Library/auxiliary/clustering_evaluator/cal_entropy.m", + "sha256": "01b36a5d42ce06602cb00035e444f59986b55b25c7c5ae7445ee22a2566396f2", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 6, + "row": 3199 + }, + { + "path": "preproc/NMF_Library/auxiliary/clustering_evaluator/calc_nmi.m", + "sha256": "0dfb59f5f9e931eb6e12142a47f97e6f8c503862ca3e213e37b88158cb33696b", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 6, + "row": 10216 + }, + { + "path": "preproc/NMF_Library/auxiliary/clustering_evaluator/calc_purity.m", + "sha256": "b20e00b1165c811a7299f73104f7847f802cb82401c452f390883c39bce3da0b", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 6, + "row": 4007 + }, + { + "path": "preproc/NMF_Library/auxiliary/clustering_evaluator/calc_purity_f.m", + "sha256": "72a4d25aae3fe9b086f5b19b2925642bf4d08e448297bc2498d703637dfec979", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 6, + "row": 4024 + }, + { + "path": "preproc/NMF_Library/auxiliary/clustering_evaluator/count_occurrence.m", + "sha256": "e9df28aa485e9acf05e4aee222eac1d83401511126a76007ad0b7a07db52d4c8", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 6, + "row": 2973 + }, + { + "path": "preproc/NMF_Library/auxiliary/clustering_evaluator/nmi_nbs.m", + "sha256": "e936c180e0753b426fea155efe19e47f4142c1ed30b12e191a58046957778577", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 6, + "row": 6952 + }, + { + "path": "preproc/NMF_Library/auxiliary/clustering_evaluator/nmi_onmf.m", + "sha256": "4861b316ac7bd31e2e2eb4f3128fd8a88cb71fb4b94715d1a2f1527841560d5f", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 6, + "row": 8941 + }, + { + "path": "preproc/NMF_Library/auxiliary/clustering_evaluator/purity.m", + "sha256": "bcc8490708e3debc4fe40e214dc4c41285c3adda001fa524a3db5cb6823c05b7", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 6, + "row": 8473 + }, + { + "path": "preproc/NMF_Library/auxiliary/clustering_evaluator/purity_f.m", + "sha256": "5a2b79f9271ec5c331e446b06817ca726e46dc8a017d00d08d2bfb1bb458f12a", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 6, + "row": 8495 + }, + { + "path": "preproc/NMF_Library/auxiliary/colsum_L_one.m", + "sha256": "8363840afe5064cbacf1fcb71591300e7f018c86f52304e2da84231dc7b889a5", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3095 + }, + { + "path": "preproc/NMF_Library/auxiliary/constructW.m", + "sha256": "5a403de6b1036c873de4b55518732e5994d9b1a95e4a1fcbc7185180b1ac8005", + "language": "MATLAB", + "lines": 533, + "truncated": false, + "block": 6, + "row": 18690 + }, + { + "path": "preproc/NMF_Library/auxiliary/data_normalization.m", + "sha256": "7e9c3f91aa531fa05f82b218df306ea67ec9103c9608f7d3c485f7dcfca78faf", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 4004 + }, + { + "path": "preproc/NMF_Library/auxiliary/distribution/exponential_dist.m", + "sha256": "ec67432d761009164051c4f293e160fe0b0f6b54b0556266c747116194039225", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 6, + "row": 2821 + }, + { + "path": "preproc/NMF_Library/auxiliary/distribution/gamma_dist.m", + "sha256": "cd27eaa1f9587a3cf77ec4f2a4851f699d69a48b751c94e0e29c5118c288e57f", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 6, + "row": 3416 + }, + { + "path": "preproc/NMF_Library/auxiliary/euc_dist.m", + "sha256": "96fe6fea89a91554713c029be095c6f38b611437b6f769a668ad0667acbc0739", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 2926 + }, + { + "path": "preproc/NMF_Library/auxiliary/eval_clustering_accuracy.m", + "sha256": "be9ee025a6b46ed187f54b645caad89192504a0783632994dafe4a24be1fc9c8", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 6, + "row": 7193 + }, + { + "path": "preproc/NMF_Library/auxiliary/g_lambda.m", + "sha256": "f5b6a3d761d416e3877dc722db92b12a5a613679015bb0be8d2121b900f39e9b", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 6, + "row": 2773 + }, + { + "path": "preproc/NMF_Library/auxiliary/generate_syntheticdata.m", + "sha256": "2b83c45b5cd3386022984f9e56ed7b778b523dd7dd231497e11d3c65a32c1949", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 9, + "row": 3856 + }, + { + "path": "preproc/NMF_Library/auxiliary/get_nmf_default_options.m", + "sha256": "8aa5f67d4ed23b88ecab7596ecc63b66a1ebb0858461794f026c36674c54e1a3", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3365 + }, + { + "path": "preproc/NMF_Library/auxiliary/initialization/NNDSVD.m", + "sha256": "390576844b7003eb35ddd18afe92d6b3d90b3b21cdb469bae3ffaa78367f8638", + "language": "MATLAB", + "lines": 123, + "truncated": false, + "block": 6, + "row": 13310 + }, + { + "path": "preproc/NMF_Library/auxiliary/initialization/Qiao_SVD_Init.m", + "sha256": "f38014a3c14e8c4c55fc5a77e070392a3f0452fcf000ed16b2d16bbaf8b4fdde", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 6, + "row": 3996 + }, + { + "path": "preproc/NMF_Library/auxiliary/initialization/generate_init_factors.m", + "sha256": "1903cde876b3254ae0747a148b6837cfeeb01300fbbe99cae0e21ff9e9f9bfdc", + "language": "MATLAB", + "lines": 229, + "truncated": false, + "block": 9, + "row": 5268 + }, + { + "path": "preproc/NMF_Library/auxiliary/k-means/k_means.m", + "sha256": "b889510c4f7947f66ee1473bccb8cd5f299b8aa402b29de6603406663ee19d14", + "language": "MATLAB", + "lines": 134, + "truncated": false, + "block": 6, + "row": 14157 + }, + { + "path": "preproc/NMF_Library/auxiliary/k-means/litekmeans.m", + "sha256": "625ba53e56ea085a66e6776eb2e2033d2485773971aa428388c47a2090d5c282", + "language": "MATLAB", + "lines": 457, + "truncated": false, + "block": 6, + "row": 18453 + }, + { + "path": "preproc/NMF_Library/auxiliary/k-means/main_k_means.m", + "sha256": "62667ab4bfb0a618be48468554bcc271daf20a29dfc89e35dd20e3725274f470", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 6, + "row": 6415 + }, + { + "path": "preproc/NMF_Library/auxiliary/load_dataset.m", + "sha256": "ea1b44eda5ff9920bc036974734b2d36ed5378d27abcc57e5932c297fb0d074b", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 9, + "row": 4336 + }, + { + "path": "preproc/NMF_Library/auxiliary/mergeOptions.m", + "sha256": "0e917b3a0dce4982043c5abc101682a69b921b1ea1b80f6de9772268ce0aca61", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3611 + }, + { + "path": "preproc/NMF_Library/auxiliary/nesterov_mnls.m", + "sha256": "a4241e11b29bea7107076c933ad871431faa579f305f27293ae1c468034a59d0", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 6, + "row": 10245 + }, + { + "path": "preproc/NMF_Library/auxiliary/nesterov_mnls_general.m", + "sha256": "71c744fba0a610b7c7a1e7a8beff8fc44513f2c0d13c2943419d2841402564de", + "language": "MATLAB", + "lines": 115, + "truncated": false, + "block": 9, + "row": 4595 + }, + { + "path": "preproc/NMF_Library/auxiliary/nmf_cost.m", + "sha256": "3de25644a81cae30d21364c7bd27cc71f0f66d718cc5d93f60272fb872cea669", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 9, + "row": 3956 + }, + { + "path": "preproc/NMF_Library/auxiliary/normalization.m", + "sha256": "cab2bd34c067450f0d3b11302f1dc0b909abca8d2097382409c3f3270453f86d", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 9, + "row": 3045 + }, + { + "path": "preproc/NMF_Library/auxiliary/normalize_H.m", + "sha256": "1e2311af499fe9f9f5482f2f4e28608bd06bfd7bdff1e4069eaed8e796f46bba", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 6, + "row": 8367 + }, + { + "path": "preproc/NMF_Library/auxiliary/normalize_W.m", + "sha256": "6826580c91ceb1fd4ba689f23d65a47eab264b51ad0c0f7cb75fbc9de6d7450f", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 9, + "row": 4044 + }, + { + "path": "preproc/NMF_Library/auxiliary/projection_mnls.m", + "sha256": "f20a34a9489b1703ba5dd65829e96e7d4667a0210a0418e90559d78b1dde5901", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 6, + "row": 2808 + }, + { + "path": "preproc/NMF_Library/auxiliary/projection_precon_mnls.m", + "sha256": "bce66efe984eade30b5250aee927b810170c458bbadec9a5d320f2f52dd1503a", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 6, + "row": 2884 + }, + { + "path": "preproc/NMF_Library/auxiliary/projfunc.m", + "sha256": "241bc582cc27c9a483717d14661e726d3bae883b53bed7031645ee88520b11d4", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 6, + "row": 8617 + }, + { + "path": "preproc/NMF_Library/auxiliary/rowsum_R_one.m", + "sha256": "e6a7fed43083ddd933863be0bbe4fc7541df56be04b431d20ddc793bab950934", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 9, + "row": 3244 + }, + { + "path": "preproc/NMF_Library/auxiliary/set_disp_frequency.m", + "sha256": "6190cf811b5c9b7b26a67c9920ebe8d6b3fac638bee26f4bf7135de71439f664", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3079 + }, + { + "path": "preproc/NMF_Library/auxiliary/similarity_matrix/calcu_similarity_matrix.m", + "sha256": "2ea670fccf196e2fa10884d33f63405a7fde76159e7ba2c65fc7eaa9defc8a16", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 6, + "row": 3429 + }, + { + "path": "preproc/NMF_Library/auxiliary/similarity_matrix/dist2.m", + "sha256": "fb11a4826994cedca0d9a95f909b164cda632915d9b3c27487d646dea289f300", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 6, + "row": 6389 + }, + { + "path": "preproc/NMF_Library/auxiliary/similarity_matrix/scale_dist3_knn.m", + "sha256": "fae6272f1e17c668283321f94e1c372ea4b14deb6fc2c65b593fac7aeea981a6", + "language": "MATLAB", + "lines": 140, + "truncated": false, + "block": 6, + "row": 14344 + }, + { + "path": "preproc/NMF_Library/auxiliary/store_nmf_infos.m", + "sha256": "84ffa0272587b85b76ff964117457bc073564c7806153acff1977d882314a053", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 9, + "row": 4760 + }, + { + "path": "preproc/NMF_Library/auxiliary/update_alpha.m", + "sha256": "a00b5d19e24e8b343e25d632363380b7e21060dbf2adf38c6731e7037c8f347e", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 6, + "row": 4683 + }, + { + "path": "preproc/NMF_Library/demo.m", + "sha256": "765b381702218ce8101e6c4adcded89f609eb38bdaae7e0b9c33b5900fc67dd2", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 9, + "row": 3658 + }, + { + "path": "preproc/NMF_Library/demo_face.m", + "sha256": "717a69defcf5250cceac4c231a7cea413e7d89d68c04db08b0444415140c7c7b", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 3796 + }, + { + "path": "preproc/NMF_Library/nk_NMFbase.m", + "sha256": "13a94d86ff7cfcedac0a43cf4b90db0ca8a42bdc33f08c7346e8d1c399a71a70", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 9, + "row": 3871 + }, + { + "path": "preproc/NMF_Library/nmflibrary_version.m", + "sha256": "07cf1e8c6c1d0eb3efa1814e03cfefc62bc78ef7e9e46f1f6513f502ec5a73c4", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 9, + "row": 2958 + }, + { + "path": "preproc/NMF_Library/plotter/display_graph.m", + "sha256": "387944d77c50a0c69e1044345e763b5e1b312708d3ad5c6a4d3e5762e4c5aabb", + "language": "MATLAB", + "lines": 114, + "truncated": false, + "block": 6, + "row": 14534 + }, + { + "path": "preproc/NMF_Library/plotter/display_sparsity_graph.m", + "sha256": "8644f20ea3b904e63e094210a6dfd1a13223e89a87efe58d9137584458745184", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 6, + "row": 7249 + }, + { + "path": "preproc/NMF_Library/plotter/plot_dictionary/getoptions.m", + "sha256": "5f89517ae7807ac1602afde42e3cfddbdc74b494ce9e4bf1f408e571d440cca5", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 6, + "row": 4305 + }, + { + "path": "preproc/NMF_Library/plotter/plot_dictionary/plot_dictionnary.m", + "sha256": "7f79186253688c69f738f6b0ddc06c5293ce9e66442f3f2daa7d12cc4fb5cff6", + "language": "MATLAB", + "lines": 104, + "truncated": false, + "block": 6, + "row": 10469 + }, + { + "path": "preproc/NMF_Library/plotter/plot_dictionary/rescale.m", + "sha256": "8cf39399d044886204b7053960e5bfa19c4df9a5138ca731ca175420a3429a94", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3150 + }, + { + "path": "preproc/NMF_Library/run_me_first.m", + "sha256": "3c3f8d92933bc9d06ab7b74558481dc9cb52822fe4d427a5f0a368c891413dc4", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3450 + }, + { + "path": "preproc/NMF_Library/solver/3rd_party/anls/nnls1_asgivens.m", + "sha256": "12e841216513e59f485dae65de71f2c11130473d3af2eb1ef285963abac674db", + "language": "MATLAB", + "lines": 160, + "truncated": false, + "block": 6, + "row": 14516 + }, + { + "path": "preproc/NMF_Library/solver/3rd_party/anls/nnlsm_activeset.m", + "sha256": "588fef091a3921be4bc4a92fa36b52495d6acb663396c032cbc76ad610186b65", + "language": "MATLAB", + "lines": 135, + "truncated": false, + "block": 6, + "row": 15040 + }, + { + "path": "preproc/NMF_Library/solver/3rd_party/anls/nnlsm_blockpivot.m", + "sha256": "8236e4734240603f8bccb3668e445ab3b45b9a539654e588aa1218a0b8f69773", + "language": "MATLAB", + "lines": 119, + "truncated": false, + "block": 6, + "row": 14416 + }, + { + "path": "preproc/NMF_Library/solver/3rd_party/anls/normalEqComb.m", + "sha256": "8e6d65c4ad8beaa42d89da675fdcd4e834a9cfe335e3f9f62d2d473154cfd0bf", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 6, + "row": 10631 + }, + { + "path": "preproc/NMF_Library/solver/3rd_party/gnmf/GNMF.m", + "sha256": "46eaa5e6d8fd29724d23860b60d4e07e8f25fd0e9574e29de1127f440cbdff97", + "language": "MATLAB", + "lines": 92, + "truncated": false, + "block": 6, + "row": 10938 + }, + { + "path": "preproc/NMF_Library/solver/3rd_party/gnmf/GNMF_Multi.m", + "sha256": "5d0dc9d8a41eaa67339e63ba2465d345cae9dbed1202b5e7b9c0bb4ea9dea4bf", + "language": "MATLAB", + "lines": 281, + "truncated": false, + "block": 6, + "row": 16442 + }, + { + "path": "preproc/NMF_Library/solver/3rd_party/gnmf/constructW.m", + "sha256": "6d87a7f7a6ecdca088afa94925e479d92f652621d726a8e154bbd19d595ff5e9", + "language": "MATLAB", + "lines": 584, + "truncated": false, + "block": 6, + "row": 18766 + }, + { + "path": "preproc/NMF_Library/solver/3rd_party/pgd/nlssubprob.m", + "sha256": "1acc458f56bf9d344480c9d304f72a0c5a5538cd8168f2db633676bdefb9280a", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 3641 + }, + { + "path": "preproc/NMF_Library/solver/3rd_party/sdnmf/SDNMF.m", + "sha256": "0005857d5e63336b8a518c0bb71669227575e48983b5a5f4c761a64b1763a96b", + "language": "MATLAB", + "lines": 99, + "truncated": false, + "block": 6, + "row": 11031 + }, + { + "path": "preproc/NMF_Library/solver/3rd_party/sdnmf/SDNMF_Multi.m", + "sha256": "1fe2e9a5ab588d49a52daf907e004f9ea3a13d5377d5ac3885bead7022037a1a", + "language": "MATLAB", + "lines": 127, + "truncated": false, + "block": 6, + "row": 12969 + }, + { + "path": "preproc/NMF_Library/solver/base/nmf_als.m", + "sha256": "30e4ae9462a7e3768b38de20f4d129611cfde64ecb2ede897c9ce320a2ac09c7", + "language": "MATLAB", + "lines": 239, + "truncated": false, + "block": 9, + "row": 5417 + }, + { + "path": "preproc/NMF_Library/solver/base/nmf_anls.m", + "sha256": "454d6a5c0388c8fac29339775f9dcfb79a2ff7db25338f0ed0aba34baadc6e9c", + "language": "MATLAB", + "lines": 162, + "truncated": false, + "block": 9, + "row": 5071 + }, + { + "path": "preproc/NMF_Library/solver/base/nmf_mu.m", + "sha256": "1b6f61389c9b2a9143ac486957a4f07a862a457af6ccc0df6fe5d66c1e5d04c2", + "language": "MATLAB", + "lines": 309, + "truncated": false, + "block": 9, + "row": 5598 + }, + { + "path": "preproc/NMF_Library/solver/base/nmf_pgd.m", + "sha256": "b84f1192a525fca1d5092350ca72a75830b90f3359b9e12e780d27e021ac3f9f", + "language": "MATLAB", + "lines": 231, + "truncated": false, + "block": 9, + "row": 5399 + }, + { + "path": "preproc/NMF_Library/solver/base/test_divergence_nmf_mu.m", + "sha256": "c2c2c05a6ea44907c44925080f5f00b4df4661a51dc9b1d60bca139f7e5ccdd2", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 9, + "row": 4041 + }, + { + "path": "preproc/NMF_Library/solver/nenmf/demo_nenmf.m", + "sha256": "1b276ae6c25bdbc70690c500980c291e70884133b77b68f7501b03ad2b6b92a9", + "language": "MATLAB", + "lines": 97, + "truncated": false, + "block": 9, + "row": 4455 + }, + { + "path": "preproc/NMF_Library/solver/nenmf/demo_nenmf_clustering.m", + "sha256": "ed466e4a5a727372ad8c66e49edb9a6fdfd276e531d935e0594871c8713089d6", + "language": "MATLAB", + "lines": 157, + "truncated": false, + "block": 9, + "row": 4981 + }, + { + "path": "preproc/NMF_Library/solver/nenmf/nenmf.m", + "sha256": "b528110e3b02eb454bcdfda449461a5f6ab652fc7779af7dd30755afc2c029c5", + "language": "MATLAB", + "lines": 408, + "truncated": false, + "block": 9, + "row": 5638 + }, + { + "path": "preproc/NMF_Library/solver/online/asag_mu_nmf.m", + "sha256": "56465869621bb7c8cb09bfd167039eeb06401561a31f6b71c3f50c5dd165077f", + "language": "MATLAB", + "lines": 149, + "truncated": false, + "block": 9, + "row": 4941 + }, + { + "path": "preproc/NMF_Library/solver/online/inmf.m", + "sha256": "60cd388e370bfe704672a69594060e40c7578fd4d33347e4e082f49a9524c3a0", + "language": "MATLAB", + "lines": 173, + "truncated": false, + "block": 9, + "row": 5081 + }, + { + "path": "preproc/NMF_Library/solver/online/onmf.m", + "sha256": "ce2a019d4c98fdc54827ae6f06f4253fd296a96261511d5d73819328b29a1d6f", + "language": "MATLAB", + "lines": 134, + "truncated": false, + "block": 9, + "row": 4768 + }, + { + "path": "preproc/NMF_Library/solver/online/onmf_acc.m", + "sha256": "ad06c295674f0755ef5324745255271c862df951dffde10a4573d44072dc79f6", + "language": "MATLAB", + "lines": 172, + "truncated": false, + "block": 9, + "row": 5046 + }, + { + "path": "preproc/NMF_Library/solver/online/ronmf.m", + "sha256": "aeb778b54f7ac3a280936d915150812ffba92a5a4408c646e794402baaa72aca", + "language": "MATLAB", + "lines": 144, + "truncated": false, + "block": 9, + "row": 4875 + }, + { + "path": "preproc/NMF_Library/solver/online/smu_nmf.m", + "sha256": "d0cd1704051ac4aa8d5a51d7cebba582cbc11b2aef2bca9986f9bd020d0af232", + "language": "MATLAB", + "lines": 202, + "truncated": false, + "block": 9, + "row": 5252 + }, + { + "path": "preproc/NMF_Library/solver/online/spg_nmf.m", + "sha256": "14e26fc40527dca11e5f548e427872380234fefd62e18998108e91301410f4ec", + "language": "MATLAB", + "lines": 206, + "truncated": false, + "block": 9, + "row": 5284 + }, + { + "path": "preproc/NMF_Library/solver/online/svrmu_nmf.m", + "sha256": "6f5c733212fb4a6eac2fd2e8afb540670239f128c569f7bf89c87b10ac976c16", + "language": "MATLAB", + "lines": 306, + "truncated": false, + "block": 9, + "row": 5580 + }, + { + "path": "preproc/NMF_Library/solver/orthogonal/nmf_dtpp.m", + "sha256": "22517f22f50b942858e7f55f6b55c4e06ed1ef405ffd838e78fc95c37265f107", + "language": "MATLAB", + "lines": 186, + "truncated": false, + "block": 9, + "row": 5200 + }, + { + "path": "preproc/NMF_Library/solver/orthogonal/nmf_hals_so.m", + "sha256": "8ccfa12c82c7fc26317014381b02fb1fee6172962be53b882ac534f4e6e373c8", + "language": "MATLAB", + "lines": 147, + "truncated": false, + "block": 9, + "row": 4997 + }, + { + "path": "preproc/NMF_Library/solver/orthogonal/nmf_orth_mu.m", + "sha256": "830598e272d51c2e279310cd24ac978637a2106c48c426067ff563281be4359f", + "language": "MATLAB", + "lines": 164, + "truncated": false, + "block": 9, + "row": 5051 + }, + { + "path": "preproc/NMF_Library/solver/orthogonal/test_orth_nmf.m", + "sha256": "944c8f99589ccb59a057f7729cca5e5265bbe3990d7735fb29021669ffb36761", + "language": "MATLAB", + "lines": 89, + "truncated": false, + "block": 9, + "row": 4352 + }, + { + "path": "preproc/NMF_Library/solver/probabilistic/demo_pnmf.m", + "sha256": "b1e221fbc707e876936a9dbd7c2854d05e119aaa677b4e414f0d64cfc0f5d96d", + "language": "MATLAB", + "lines": 191, + "truncated": false, + "block": 9, + "row": 4988 + }, + { + "path": "preproc/NMF_Library/solver/probabilistic/pnmf_vb.m", + "sha256": "2f8daf17a8a25c40dcd2c48a6c8c6e06282e03723f809889b5e1b2c240fd963d", + "language": "MATLAB", + "lines": 341, + "truncated": false, + "block": 9, + "row": 5546 + }, + { + "path": "preproc/NMF_Library/solver/probabilistic/tn_vector.m", + "sha256": "f5b6abe836577a22f49b9c90140eaac5c5356b4964f5aed40b51adc270aa206d", + "language": "MATLAB", + "lines": 69, + "truncated": false, + "block": 9, + "row": 4022 + }, + { + "path": "preproc/NMF_Library/solver/robust/rnmf.m", + "sha256": "b868e38a9794c5e39cc402a4f60b2ff7697fca5f07dec802cf580df4b0898f37", + "language": "MATLAB", + "lines": 111, + "truncated": false, + "block": 9, + "row": 4640 + }, + { + "path": "preproc/NMF_Library/solver/semi_nmf/semi_nmf.m", + "sha256": "2b84de6124051518158b92987859c5f1d8e0f321fc49f07cd36887a0dc63e886", + "language": "MATLAB", + "lines": 131, + "truncated": false, + "block": 9, + "row": 4851 + }, + { + "path": "preproc/NMF_Library/solver/sparse/nmf_sc.m", + "sha256": "045783ec6a262b8bd2ebd5fe91fde774bcddd01f45130cb679570a580a29f600", + "language": "MATLAB", + "lines": 218, + "truncated": false, + "block": 9, + "row": 5279 + }, + { + "path": "preproc/NMF_Library/solver/sparse/nmf_sparse_mu.m", + "sha256": "82b84c696e48b6479dac077b14aeb9507e28760fe44eafca272386a0c1510870", + "language": "MATLAB", + "lines": 190, + "truncated": false, + "block": 9, + "row": 5245 + }, + { + "path": "preproc/NMF_Library/solver/sparse/nmf_sparse_mu_v.m", + "sha256": "d2fceacad59a77808943d266763acd81647537b6378acf1bba6f25d41a4af5b6", + "language": "MATLAB", + "lines": 165, + "truncated": false, + "block": 9, + "row": 5101 + }, + { + "path": "preproc/NMF_Library/solver/sparse/ns_nmf.m", + "sha256": "3751ec06b76373ec4da45a1a771ebb1f807d816fed4af7c1857be72fdf142334", + "language": "MATLAB", + "lines": 195, + "truncated": false, + "block": 9, + "row": 5230 + }, + { + "path": "preproc/NMF_Library/solver/sparse/sparse_nmf.m", + "sha256": "f5dadab9763ad6d7bac29f973c17f0e792273060319823c1e568b2743a5cbf97", + "language": "MATLAB", + "lines": 144, + "truncated": false, + "block": 9, + "row": 4966 + }, + { + "path": "preproc/NMF_Library/solver/sparse/test_nsnmf.m", + "sha256": "c8c0932fdacff52c9af69a48ba3cfbdd38edec3c0f9fc7f99ff80126760e29e4", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 9, + "row": 4034 + }, + { + "path": "preproc/NMF_Library/solver/sparse/test_sparse_nmf.m", + "sha256": "4952f9b555156b81b73a70975ff9a612c32351c13deacac13e501986317324cd", + "language": "MATLAB", + "lines": 91, + "truncated": false, + "block": 9, + "row": 4449 + }, + { + "path": "preproc/NMF_Library/solver/sparse/test_sparse_nmf_org.m", + "sha256": "5e09f4dec7a2eab5317039ea3119f0400a479e35f016bd9866e7ab2fb0979d50", + "language": "MATLAB", + "lines": 103, + "truncated": false, + "block": 9, + "row": 4602 + }, + { + "path": "preproc/NMF_Library/solver/symm/symm_anls.m", + "sha256": "d9a4cf8ba5af61c477c6cb546b2e8c5b634b3d18259b4a87ea2c0cf4eacfb4f5", + "language": "MATLAB", + "lines": 179, + "truncated": false, + "block": 9, + "row": 5195 + }, + { + "path": "preproc/NMF_Library/solver/symm/symm_halsacc.m", + "sha256": "216b69c7e3018ad0dd99fe4e97d593b88de49dce6c2e5c53a4159458447602f2", + "language": "MATLAB", + "lines": 180, + "truncated": false, + "block": 9, + "row": 5181 + }, + { + "path": "preproc/NMF_Library/solver/symm/symm_newton.m", + "sha256": "8c9a9d785df4d32ea63877bc877c95fc9dc8762c5488e46ff33cb12ee1391866", + "language": "MATLAB", + "lines": 203, + "truncated": false, + "block": 9, + "row": 5269 + }, + { + "path": "preproc/NMF_Library/solver/symm/test_symm.m", + "sha256": "3ae48ac04320d6e645425db217c408dbde0394fc31c55ddce86c2d0a892dc2de", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 9, + "row": 4015 + }, + { + "path": "preproc/NMF_Library/solver/symm/test_symm_clustering.m", + "sha256": "3def2492ea9b9dfc2fd0ba54fc8d93c6888d648bddb953bfcd9e46afb09e8a71", + "language": "MATLAB", + "lines": 86, + "truncated": false, + "block": 9, + "row": 4547 + }, + { + "path": "preproc/NMF_Library/test/comp_nmf_base_algorithms.m", + "sha256": "817a61e8baeadd170fb2c2ecda949a1f691a58f41b478a3493d12390f94de3df", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 9, + "row": 4405 + }, + { + "path": "preproc/NMF_Library/test/comp_nmf_online_algorithms.m", + "sha256": "053455d2ecf7427af9b17cf3efb0a13d50f0ed82e7285070608925a49625ef6a", + "language": "MATLAB", + "lines": 947, + "truncated": false, + "block": 9, + "row": 5887 + }, + { + "path": "preproc/NMF_Library/test/comp_nmf_online_algorithms_test.m", + "sha256": "62df122e5fcdcf1e7704e2e9b7ecb5349509c66859de6b11c2cf839abd68ec47", + "language": "MATLAB", + "lines": 947, + "truncated": false, + "block": 9, + "row": 5888 + }, + { + "path": "preproc/NMF_Library/test/comp_nmf_robust_algorithms.m", + "sha256": "305b37bdffa65603f3dc79d2f7e306e95b15744cec903aa014691a9c94e82529", + "language": "MATLAB", + "lines": 193, + "truncated": false, + "block": 9, + "row": 5073 + }, + { + "path": "preproc/NMF_Library/test/demo_face_online.m", + "sha256": "9c484908769b5791cfc71d4824210fe4793945fe9e7addc3e8354547c044d0f7", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3839 + }, + { + "path": "preproc/NMF_Library/test/demo_face_with_outlier_online.m", + "sha256": "eaf9c4534848e1a7520ea95bc67dad72f6994547f55bd750db82c32b42dc7306", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 9, + "row": 3954 + }, + { + "path": "preproc/NMF_Library/test/test_clustering_gnmf_sdnmf.m", + "sha256": "33d5269c0a9e3714f575c4f41090e10c6f9a6d10d212b473fad2fcd872b03604", + "language": "MATLAB", + "lines": 108, + "truncated": false, + "block": 9, + "row": 4452 + }, + { + "path": "preproc/NMF_Library/test_nmf_base.m", + "sha256": "a86a72495e226cde91975bf54e6d94591b6e6794aa18b110995d3cc4ebc02c95", + "language": "MATLAB", + "lines": 267, + "truncated": false, + "block": 9, + "row": 5356 + }, + { + "path": "preproc/NMF_Library/test_nmf_online.m", + "sha256": "d6925ab4a167af146ae2ecb6acadf261395ba5553aad777f44953e3302e2edfc", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 9, + "row": 4061 + }, + { + "path": "preproc/NMF_Library/test_seminmf.m", + "sha256": "112fa3f7b252073b22868b35260afacf470eb6ff0a4f9c15ae4c77cde70490ec", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4398 + }, + { + "path": "preproc/NMF_Soteiras/AUtoPhysicalUnits.m", + "sha256": "7c45784e35bdf39b53f95e95f700a7e3ea474eb9f9e69d2dcb163ace05ce71e0", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 9, + "row": 3238 + }, + { + "path": "preproc/NMF_Soteiras/Hungarian.m", + "sha256": "1d83ec20881144f6ad3839ccc0ea00bcd4a805eae3d67c0a18713e37fa516241", + "language": "MATLAB", + "lines": 280, + "truncated": false, + "block": 9, + "row": 5466 + }, + { + "path": "preproc/NMF_Soteiras/NNDSVD.m", + "sha256": "46b9587035b5fd1c9a89ae8f39025798f343effb1a430c08a410eb36445a2970", + "language": "MATLAB", + "lines": 131, + "truncated": false, + "block": 9, + "row": 4826 + }, + { + "path": "preproc/NMF_Soteiras/calcRecError.m", + "sha256": "bb2e02c454112408f2145f91b5888a09538a68df81daba15067087a60f5a71fe", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 9, + "row": 4360 + }, + { + "path": "preproc/NMF_Soteiras/calculateComponentWeightedAverageNIFTI.m", + "sha256": "762b21655d198582149f82477526ba2bbe271978dab1a929f038ea27cbf7b794", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 9, + "row": 4351 + }, + { + "path": "preproc/NMF_Soteiras/clustering_adjustedRand_fast.m", + "sha256": "0d356707bf1ecf05e6839959d3e091a4cc5aefe7ab1cb69460dcbf4269fc5e53", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3550 + }, + { + "path": "preproc/NMF_Soteiras/evaluateReproducibility.m", + "sha256": "c1f208034dd1d8ab8951672d9473db78914b855bf55c739e434e1d27f5037735", + "language": "MATLAB", + "lines": 108, + "truncated": false, + "block": 9, + "row": 4736 + }, + { + "path": "preproc/NMF_Soteiras/opnmf.m", + "sha256": "508882208c97a10d0638366f05f2326e60b6f71cfbb29e415ce3933c068e701a", + "language": "MATLAB", + "lines": 170, + "truncated": false, + "block": 9, + "row": 5079 + }, + { + "path": "preproc/NMF_Soteiras/opnmf_mem.m", + "sha256": "f8db6c78d655f2af4ce080109b7e803294a327d27ba000b1b917657a6039210a", + "language": "MATLAB", + "lines": 176, + "truncated": false, + "block": 9, + "row": 5141 + }, + { + "path": "preproc/NMF_Soteiras/randpca.m", + "sha256": "7eedb6f2f361765a2e4e5d4488a20dc851150a69624975e2c0893fde7414a321", + "language": "MATLAB", + "lines": 597, + "truncated": false, + "block": 9, + "row": 5661 + }, + { + "path": "preproc/NeNMF/RPI_NeNMF.m", + "sha256": "ab168f356dc03d18dbfa924eca703271c78b4ef2134633b4dc283ec927270a05", + "language": "MATLAB", + "lines": 218, + "truncated": false, + "block": 9, + "row": 5131 + }, + { + "path": "preproc/NeNMF/RSI_NeNMF.m", + "sha256": "aabed7a1b95687d496c62ead0ecd26698d3bcb7d1beb83b008bc8b3769478f18", + "language": "MATLAB", + "lines": 211, + "truncated": false, + "block": 9, + "row": 5097 + }, + { + "path": "preproc/NeNMF/VANILLA_NeNMF.m", + "sha256": "c1b83417cb2b20aed26dfa3cc46ac52d65ce3adf685da26e1490fe9d40e3c3d3", + "language": "MATLAB", + "lines": 156, + "truncated": false, + "block": 9, + "row": 4889 + }, + { + "path": "preproc/NeNMF/stop_rule.m", + "sha256": "516f8919ef2b6cd0a3bed3286ff2a4232110f7afa8dc6086527a7c4a0181750a", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 9, + "row": 2982 + }, + { + "path": "preproc/PerfDiscretizeObj.m", + "sha256": "9939f9a39f323236205f376f5f9b61dac4fc8aea254eef3ed2811efe12ae88b9", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3593 + }, + { + "path": "preproc/PerfSymbolizeObj.m", + "sha256": "f835f73cb9f9d46ddbb6bc5e482c852ec1615738d1714b0a557e01dfbd3fb244", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3608 + }, + { + "path": "preproc/SeqkNN.m", + "sha256": "d37ab0c8d0a482b13290b224eb456fd8ee4a6eb0f2e4bd218e5c37c343beb31b", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 9, + "row": 4462 + }, + { + "path": "preproc/SparsePLS/proj_def.m", + "sha256": "960a876168523c17b0e8727d97cf91242c34790fda24d1e25ba011b363778eaf", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3351 + }, + { + "path": "preproc/SparsePLS/spls.m", + "sha256": "51779f32890e8017f2f2682c9becbb1c49e0be1bc1c1d86b1cf3ebf14a6c8b8f", + "language": "MATLAB", + "lines": 266, + "truncated": false, + "block": 9, + "row": 5347 + }, + { + "path": "preproc/apply_binning.m", + "sha256": "8a9150da0b9ff89c2067de8bfeea2454d751658bc631986abcb172a5e5c856f5", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 2999 + }, + { + "path": "preproc/combat/aprior.m", + "sha256": "7770daa5e077da09967c6ac7966477883a85b59c15b00eb94c3ea75471f5dd05", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 9, + "row": 2944 + }, + { + "path": "preproc/combat/bprior.m", + "sha256": "068b71bf1a6d3baf4a6e94c1c64adf6e3ea31a31dfda4a54eeba89f601129bd3", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 9, + "row": 2943 + }, + { + "path": "preproc/combat/combat.m", + "sha256": "d4430b3854d7d3f29c499f027e27ab5df22546ec653a62e433ce3bcc82bc3910", + "language": "MATLAB", + "lines": 252, + "truncated": false, + "block": 9, + "row": 5516 + }, + { + "path": "preproc/combat/example_combat_extval.m", + "sha256": "039730ff6ea373676a4462fc46b27b77df9124e8f4d43b6d3c39adbe2fad3323", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 9, + "row": 3759 + }, + { + "path": "preproc/combat/itSol.m", + "sha256": "951fe2af12311cf3e0abc8a1af6f36a270e0dc93c48430c8dd4fe77fbcd6f33c", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 9, + "row": 3242 + }, + { + "path": "preproc/combat/postmean.m", + "sha256": "922f6b078fe4b0770fc175e1e7ffb074d9182e2025b01efe5959b41feb87e642", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2945 + }, + { + "path": "preproc/combat/postvar.m", + "sha256": "91c0d5a3293b38b7246c9cad7f821d29862fd6290082c5aca2c9425e415eaf4b", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2920 + }, + { + "path": "preproc/cv_PerfICA.m", + "sha256": "ff4d012d5f7195943d23797cff42795ba696c40f8ac3c936acddfc058ca6cd66", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 9, + "row": 3921 + }, + { + "path": "preproc/cv_ROImeans_config.m", + "sha256": "1c3515ac571bfbf010808397b86f9ae93b0cff1476faa77df54b9880c5595fa1", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3671 + }, + { + "path": "preproc/cv_TestCustomPreproc.m", + "sha256": "9b71e1d3435eab609dbaa2ab2b689298003b62d33548e5b653b0712bbd4aea5b", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 9, + "row": 2942 + }, + { + "path": "preproc/cv_compute_ROImeans.m", + "sha256": "848ae7734c21bf4af2483f190b87bfd5395afe66cd129ff4755d84f45b828588", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3574 + }, + { + "path": "preproc/cv_customPreproc_config.m", + "sha256": "0c9c4adcce4699ef21af792752627f252dc96c53efe9a6f8249d8cfa64b977e1", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 4534 + }, + { + "path": "preproc/cv_icaHarmonize.m", + "sha256": "4f7bfea5008adf03fcad0b72190509674231d5df47a8169c1365214116aa764d", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 9, + "row": 4173 + }, + { + "path": "preproc/cv_perfCustomPreproc.m", + "sha256": "cd3eb845dafaf0a3538c6be55c02bbdd9dd17168f9d051dbd85816f7227c421a", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3528 + }, + { + "path": "preproc/cv_perfROImeans.m", + "sha256": "5b365c3928978911362352ccd15266c5205e6eae5429ff5f4366c7793226b02f", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3513 + }, + { + "path": "preproc/drrobust/adjustedboxplot.m", + "sha256": "28f0cc8f6d492c7571e8853779141aa1a5ab3c5de531920cde7712399ba4f0c2", + "language": "MATLAB", + "lines": 653, + "truncated": false, + "block": 9, + "row": 5841 + }, + { + "path": "preproc/drrobust/adjustedoutlyingness.m", + "sha256": "dc73297308792ee470af70f34fd6dfe7e1a0a6c51dc39071144e574fa6c22486", + "language": "MATLAB", + "lines": 225, + "truncated": false, + "block": 9, + "row": 5313 + }, + { + "path": "preproc/drrobust/adm.m", + "sha256": "e79d33f02e636f92770fe587a616f4e74a86e760bb9d4a7743b7dc31fca1177e", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 9, + "row": 3782 + }, + { + "path": "preproc/drrobust/agnes.m", + "sha256": "3136e69c48d61987cafd3ba94d07409608134348760fd9b21368526ab2fdfae7", + "language": "MATLAB", + "lines": 221, + "truncated": false, + "block": 9, + "row": 5358 + }, + { + "path": "preproc/drrobust/bagplot.m", + "sha256": "c585e30abad5ca2709c0a80103c9e7e271dae581cbdc5b3d9d64f41f005486af", + "language": "MATLAB", + "lines": 1959, + "truncated": false, + "block": 9, + "row": 5975 + }, + { + "path": "preproc/drrobust/bannerplot.m", + "sha256": "eba85608f8f0a6af9587f6698f922cbbb4930942c521abff9b8cf79b9bb27bc1", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 9, + "row": 4321 + }, + { + "path": "preproc/drrobust/cda.m", + "sha256": "3dd95f027907c085950398d5ca611eab60581caaacf3036966798c0a967b2d80", + "language": "MATLAB", + "lines": 487, + "truncated": false, + "block": 9, + "row": 5793 + }, + { + "path": "preproc/drrobust/cdq.m", + "sha256": "61ade0cf2609e504fb808385671c30b5ceee785d787b435b4dbbb3678bd82863", + "language": "MATLAB", + "lines": 370, + "truncated": false, + "block": 9, + "row": 5548 + }, + { + "path": "preproc/drrobust/chi2inv.m", + "sha256": "1842904387ae23c6b6fcbe413b9968a40a7ebeccae3ca8642a226829fea3b8e3", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 9, + "row": 3946 + }, + { + "path": "preproc/drrobust/chiqqplot.m", + "sha256": "117d8db47f22de8fbec28a8bac11f056947d8499a50c825cfc78f0030c14f00c", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3693 + }, + { + "path": "preproc/drrobust/clara.m", + "sha256": "160b8c87850ba6e4f82ddf40f29ea9dae2a3f4334e00c6afeb3e04e177ade02a", + "language": "MATLAB", + "lines": 194, + "truncated": false, + "block": 9, + "row": 5282 + }, + { + "path": "preproc/drrobust/classSVD.m", + "sha256": "9fd7815a7031015f680bafaabfd0e04d2058c9f4829228093a5dcba88075166b", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3474 + }, + { + "path": "preproc/drrobust/clusplot.m", + "sha256": "c1f48196806f9ec050f0aac1c58ca8eb4271c8b9c34d4beb9f67d6cb049eee4b", + "language": "MATLAB", + "lines": 239, + "truncated": false, + "block": 9, + "row": 5421 + }, + { + "path": "preproc/drrobust/common_size.m", + "sha256": "9018fec7cc9a18d9fcf806c17ffc4738171a608b94d1ce08f251fa0f8fc3a75f", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4359 + }, + { + "path": "preproc/drrobust/cpca.m", + "sha256": "0ee14307376fbe1acc179ab98da0db192789a6e13c5ed52cc9ee01778bf37cf8", + "language": "MATLAB", + "lines": 139, + "truncated": false, + "block": 9, + "row": 4961 + }, + { + "path": "preproc/drrobust/cpcr.m", + "sha256": "354541885633a0d86d17a61138ee7eb9c94dbe32d4d73f95650c08b60ab8a001", + "language": "MATLAB", + "lines": 159, + "truncated": false, + "block": 9, + "row": 5180 + }, + { + "path": "preproc/drrobust/csimca.m", + "sha256": "1f9cb15532cf10c7afd0b55dd10189a54d11ce3a4cc241849c8b45da4e217b80", + "language": "MATLAB", + "lines": 447, + "truncated": false, + "block": 9, + "row": 5765 + }, + { + "path": "preproc/drrobust/csimpls.m", + "sha256": "9d846eb356742d64a8218699306d19fc6b73d2682607e5601a6d38f74ec82df8", + "language": "MATLAB", + "lines": 223, + "truncated": false, + "block": 9, + "row": 5302 + }, + { + "path": "preproc/drrobust/cvMcd.m", + "sha256": "45c7d6a5e9eb0d43c2c8cd9cc8a72b5cf222e2c94d505ac1f8a1ccb88e9d5d2b", + "language": "MATLAB", + "lines": 167, + "truncated": false, + "block": 9, + "row": 4935 + }, + { + "path": "preproc/drrobust/cvRobpca.m", + "sha256": "d1cdace02e6cc7112ebfdf6d8d6fc2aa935014d38080868002d7858d2e07bbc2", + "language": "MATLAB", + "lines": 206, + "truncated": false, + "block": 9, + "row": 5191 + }, + { + "path": "preproc/drrobust/cvRpcr.m", + "sha256": "366bbc98c2a77f742df6de23d74b8fa88929f58a50686d35e2fddc4f3085913b", + "language": "MATLAB", + "lines": 553, + "truncated": false, + "block": 9, + "row": 5748 + }, + { + "path": "preproc/drrobust/cvRsimpls.m", + "sha256": "685fc726b43b210e794476a622a053ee452e82f3d2ade4f1805285deb8997db8", + "language": "MATLAB", + "lines": 483, + "truncated": false, + "block": 9, + "row": 5678 + }, + { + "path": "preproc/drrobust/daisy.m", + "sha256": "0df6a3bd8733b6d78693828fd4c7f2da2ef5064c73c5183a56e5e6c08f0fca2d", + "language": "MATLAB", + "lines": 94, + "truncated": false, + "block": 9, + "row": 4559 + }, + { + "path": "preproc/drrobust/daplot.m", + "sha256": "79a7171ff994cc54b930ef2fb37aefe080c52611dee05072fe13f5a3a465d402", + "language": "MATLAB", + "lines": 75, + "truncated": false, + "block": 9, + "row": 4483 + }, + { + "path": "preproc/drrobust/ddplot.m", + "sha256": "3e534b791e09e5dce8602c6896109299ffd1272635cb7ebc0307d0465d16b2a5", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 3949 + }, + { + "path": "preproc/drrobust/diana.m", + "sha256": "cc5e1b5d4c93dcdb69e250b4d151c0280c8525847038ac667b9c6d7f3e0c9ce9", + "language": "MATLAB", + "lines": 197, + "truncated": false, + "block": 9, + "row": 5278 + }, + { + "path": "preproc/drrobust/distplot.m", + "sha256": "646c14b9ff3de46dbbd435f759b4cc0257e994e2b98c4865a2d249fb10f64298", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 9, + "row": 3747 + }, + { + "path": "preproc/drrobust/ellipsplot.m", + "sha256": "8eeba131b019e693c201b559f6528f44e047dab2d6a2ca08d7279aea561a425e", + "language": "MATLAB", + "lines": 76, + "truncated": false, + "block": 9, + "row": 4394 + }, + { + "path": "preproc/drrobust/extractmcdregres.m", + "sha256": "295ffd5c7e9b4128c3edb75835a3ba66e03604f9fcfa7d16c40e6aad29a8ef1c", + "language": "MATLAB", + "lines": 113, + "truncated": false, + "block": 9, + "row": 4892 + }, + { + "path": "preproc/drrobust/fanny.m", + "sha256": "912a059cc6bdce7e5ee95fbc2da88b4ba076c60a9e37bdf1df7d6d8ca50030e3", + "language": "MATLAB", + "lines": 167, + "truncated": false, + "block": 9, + "row": 5137 + }, + { + "path": "preproc/drrobust/gamcdfo.m", + "sha256": "5bd0a063fc99e62db7782db23f412809af37d376a5338f5cf58169b353a7cf3d", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4158 + }, + { + "path": "preproc/drrobust/gampdf.m", + "sha256": "bbbfc2859526b441b89507091baeb0bf790ef42e797cb4637d9a71a69f315a50", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 9, + "row": 4363 + }, + { + "path": "preproc/drrobust/greatsort.m", + "sha256": "5138d70073bac9cafbed0fd1e1d46d6706139d53a9fb99c8688aeddd04ba2475", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3228 + }, + { + "path": "preproc/drrobust/halfspacedepth.m", + "sha256": "a3efe06d4e9d37bd6f2e6412e473172adb1690b324e131627cda400f064cf667", + "language": "MATLAB", + "lines": 134, + "truncated": false, + "block": 9, + "row": 4625 + }, + { + "path": "preproc/drrobust/hl.m", + "sha256": "1018fd335d17b2e20b62849dc0fdaf9dd0ea7c329bd46471e7e8bc29f9bfca6b", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4085 + }, + { + "path": "preproc/drrobust/kernelEVD.m", + "sha256": "22e76729fe1ea0f80512eba4fb5cf812e3cfc43ffe0a5370a229c8c9ada21138", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3622 + }, + { + "path": "preproc/drrobust/l1median.m", + "sha256": "f8449901fc0cba1d5897f31f41eb7058a9a102278f9a131200ae7c5bfbdafa5a", + "language": "MATLAB", + "lines": 89, + "truncated": false, + "block": 9, + "row": 4361 + }, + { + "path": "preproc/drrobust/lmc.m", + "sha256": "8dd6707f90077402b8369ca2d1e34f01e1ecff37c712059c9761fff54115f6d0", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 9, + "row": 3692 + }, + { + "path": "preproc/drrobust/lsscatter.m", + "sha256": "832c6c83c2610f062b693fd2407aabcb5d7e61447ee9b0b93ba13b13e0f048f2", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 9, + "row": 3917 + }, + { + "path": "preproc/drrobust/ltsregres.m", + "sha256": "4ec874d2381ff087b10d548219220ba25b475f3df165f8b69c4ec73f90b9946e", + "language": "MATLAB", + "lines": 1162, + "truncated": false, + "block": 9, + "row": 5952 + }, + { + "path": "preproc/drrobust/madc.m", + "sha256": "98c721fdb074c9ff898c0602cbc70b0048268e5321d9e1dc6b40180023d5f777", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 4013 + }, + { + "path": "preproc/drrobust/mahalanobis.m", + "sha256": "2728dcca38957f8652bccda03ba28fd7f737d9e877123be7de4f20535747703c", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 9, + "row": 4537 + }, + { + "path": "preproc/drrobust/makeplot.m", + "sha256": "dac75b297ce0e81886b9424a4d7de33064d94202a8e6a3a67d8db9db4aee0b0d", + "language": "MATLAB", + "lines": 1501, + "truncated": false, + "block": 9, + "row": 5980 + }, + { + "path": "preproc/drrobust/mc.m", + "sha256": "3f8a211e3ebb036ca2ae2f5bad308b03b468dc553fcadacd49583f6c1799e672", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 3962 + }, + { + "path": "preproc/drrobust/mcdcov.m", + "sha256": "7e05ba174e306fe09c04052dc397da2c92276d6a133587d0eb622cef80056087", + "language": "MATLAB", + "lines": 1445, + "truncated": false, + "block": 9, + "row": 5979 + }, + { + "path": "preproc/drrobust/mcdregres.m", + "sha256": "6b867c5393daffb423cc69a594ed05013e2cfa8a477cb9bdf59984e0e27d4d10", + "language": "MATLAB", + "lines": 303, + "truncated": false, + "block": 9, + "row": 5595 + }, + { + "path": "preproc/drrobust/mcenter.m", + "sha256": "3892cbaae03dc328faf682afa3d86dc9f524d536495140db8013323dc34d8aac", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3185 + }, + { + "path": "preproc/drrobust/mlochuber.m", + "sha256": "185c26f57aef14bdf0716c39b1f80c8728867608ad7f249feb62592fcd193bac", + "language": "MATLAB", + "lines": 128, + "truncated": false, + "block": 9, + "row": 4754 + }, + { + "path": "preproc/drrobust/mloclogist.m", + "sha256": "db5e0ab70bff9a8ed51a97437ff7ab37d39a0a8cca76d638336aaed865a41f7f", + "language": "MATLAB", + "lines": 124, + "truncated": false, + "block": 9, + "row": 4725 + }, + { + "path": "preproc/drrobust/mlr.m", + "sha256": "d841d5b30e7041161982e232d0aa1ff33a783b506bc80f2aa250b548b0bbf3e9", + "language": "MATLAB", + "lines": 149, + "truncated": false, + "block": 9, + "row": 5127 + }, + { + "path": "preproc/drrobust/mona.m", + "sha256": "c6a89d4e87a9af3642662df2688057322581b41987201738bf00b29499ab6208", + "language": "MATLAB", + "lines": 181, + "truncated": false, + "block": 9, + "row": 5045 + }, + { + "path": "preproc/drrobust/mscalelogist.m", + "sha256": "6fc4eba9cd3f16d35a19abbd728b8f191bb70312d6a52838f58d13f6cf67325f", + "language": "MATLAB", + "lines": 122, + "truncated": false, + "block": 9, + "row": 4686 + }, + { + "path": "preproc/drrobust/nm_gamcdf.m", + "sha256": "b35d91ba245d9c06ab0a214d85808e9874f0a7d9ada96cd32ae1d3a4fddad2e7", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4159 + }, + { + "path": "preproc/drrobust/nm_gaminv.m", + "sha256": "2bb521431bb23d32c082783b55d45bb107241aca6fd6719c3fe7f17c0d341f69", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 9, + "row": 4420 + }, + { + "path": "preproc/drrobust/nm_predict.m", + "sha256": "7bf4bcd7e236993bc2f466b3c92c1a67ad0b5ce1cb25d91e9605c2ccd491b65f", + "language": "MATLAB", + "lines": 276, + "truncated": false, + "block": 9, + "row": 5590 + }, + { + "path": "preproc/drrobust/norminv.m", + "sha256": "dca1fc87d19a56ad812c54dd7334d204c62df7c0e4a9dcfd23317afd08e7932b", + "language": "MATLAB", + "lines": 76, + "truncated": false, + "block": 9, + "row": 4339 + }, + { + "path": "preproc/drrobust/normqqplot.m", + "sha256": "f968279648d4aa7670e88871d61f012a8899c880fd04612a0801927863886c1d", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3562 + }, + { + "path": "preproc/drrobust/ols.m", + "sha256": "a140bfbdcf1c72f57e34c7ebb83666ebc0918825dd94621f617b09c41b3d105d", + "language": "MATLAB", + "lines": 143, + "truncated": false, + "block": 9, + "row": 5035 + }, + { + "path": "preproc/drrobust/pam.m", + "sha256": "2ed28fbcf55455d2fec5e59cf2e8cbafd83ed295c0a837e65953c458ec4d2b09", + "language": "MATLAB", + "lines": 236, + "truncated": false, + "block": 9, + "row": 5444 + }, + { + "path": "preproc/drrobust/plotnumbers.m", + "sha256": "134d74a9c069ba6be1a45fe34ec805c538dab64bc3348da2abce3fa5aa770886", + "language": "MATLAB", + "lines": 94, + "truncated": false, + "block": 9, + "row": 4470 + }, + { + "path": "preproc/drrobust/putlabel.m", + "sha256": "5fa75b8de53cce03e2480ee3575aa268926fdf36240f0bcef12998e4cc25072c", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 9, + "row": 3866 + }, + { + "path": "preproc/drrobust/qn.m", + "sha256": "31316b1982b84f40f9f222e4502180a1eb131540fa90fb3db71575313280a200", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3828 + }, + { + "path": "preproc/drrobust/qnm.m", + "sha256": "0b0b50f6130774b4538a31b39b71c76072da2ab9a39552df5f08f4f93686f291", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 9, + "row": 4181 + }, + { + "path": "preproc/drrobust/randomset.m", + "sha256": "e3cdb4b4271545065d5d6c8fdbf5ed47c094fe8ced023b2484a5eb4544be5a5e", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3708 + }, + { + "path": "preproc/drrobust/rapca.m", + "sha256": "0d5228a299e649bd83d380c364a857e87d50be3a885929246d76fa309680c1f3", + "language": "MATLAB", + "lines": 430, + "truncated": false, + "block": 9, + "row": 5655 + }, + { + "path": "preproc/drrobust/rda.m", + "sha256": "af19947e3dda1e0f8c8906f3b3b1caa77708c84febe119cc0aefabcc63387f70", + "language": "MATLAB", + "lines": 527, + "truncated": false, + "block": 9, + "row": 5824 + }, + { + "path": "preproc/drrobust/regresdiagplot.m", + "sha256": "835c212d2a5128fbef2c9f4a17e3dbfb6dc417f2590f7a36fef3d2832c892da7", + "language": "MATLAB", + "lines": 148, + "truncated": false, + "block": 9, + "row": 5064 + }, + { + "path": "preproc/drrobust/regresdiagplot3d.m", + "sha256": "1b0fda0fce224d30fb18c714f593e222c07d810d9d5a8d656271b88690e9582a", + "language": "MATLAB", + "lines": 153, + "truncated": false, + "block": 9, + "row": 4703 + }, + { + "path": "preproc/drrobust/removal.m", + "sha256": "8897fdb61289d356be54bb4425878e808be3b7483651918995e6d084b9362391", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3414 + }, + { + "path": "preproc/drrobust/removeObsMcd.m", + "sha256": "e94e6784f398c0dfcdc619e52b50a0d0bfbe9f386862f9406c07224eca28ffb7", + "language": "MATLAB", + "lines": 91, + "truncated": false, + "block": 9, + "row": 4508 + }, + { + "path": "preproc/drrobust/removeObsRobpca.m", + "sha256": "0a13e2e54800bc0051c6416a836ff6d718fad00c3802853f1e4fcaa980cc88ec", + "language": "MATLAB", + "lines": 168, + "truncated": false, + "block": 9, + "row": 5160 + }, + { + "path": "preproc/drrobust/residualplot.m", + "sha256": "55e7116c1b9bb8760b5342cecef2d6bae6cad4d7bb7e71aab1d8f1abc5119e75", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 3904 + }, + { + "path": "preproc/drrobust/rmc.m", + "sha256": "7856da1e0ab4b62d59be22f1a52fb351453c683c4712ba66847024d12cc8e331", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 9, + "row": 3695 + }, + { + "path": "preproc/drrobust/robpca.m", + "sha256": "1c639f1989c14636ce563629526151e69d5a853026943aa67fe2902042b08e8d", + "language": "MATLAB", + "lines": 866, + "truncated": false, + "block": 9, + "row": 5889 + }, + { + "path": "preproc/drrobust/robpcaregres.m", + "sha256": "a4a80accb9bd12ae1880528c23d35ad2f9f986b2f3bfc256adb05ffb1511303e", + "language": "MATLAB", + "lines": 94, + "truncated": false, + "block": 9, + "row": 4641 + }, + { + "path": "preproc/drrobust/robstd.m", + "sha256": "3a446435c5b5a3f7a39073df914484671d142bb0b468189e71300a5fda557cf1", + "language": "MATLAB", + "lines": 115, + "truncated": false, + "block": 9, + "row": 4764 + }, + { + "path": "preproc/drrobust/rpcr.m", + "sha256": "b749292997a5f69bf65d6fd85543e9fbb8c55c37706dff8b49827fbd4f6a410c", + "language": "MATLAB", + "lines": 464, + "truncated": false, + "block": 9, + "row": 5775 + }, + { + "path": "preproc/drrobust/rrmse.m", + "sha256": "25e95894e2fd0b50fcbe0d6dd105e721fd10e22cba604c7d49714bfbb61ddb4b", + "language": "MATLAB", + "lines": 140, + "truncated": false, + "block": 9, + "row": 4841 + }, + { + "path": "preproc/drrobust/rsimca.m", + "sha256": "1901ba60e0625bd8af2aed46046e6cd782f5183fde0a2aa6c28c836602b8f8e1", + "language": "MATLAB", + "lines": 610, + "truncated": false, + "block": 9, + "row": 5867 + }, + { + "path": "preproc/drrobust/rsimpls.m", + "sha256": "53621ff867e691801f3039f5fd7ab9bb6ae8b27594e19c782a5346ef975ec62f", + "language": "MATLAB", + "lines": 519, + "truncated": false, + "block": 9, + "row": 5808 + }, + { + "path": "preproc/drrobust/rsquared.m", + "sha256": "edd5da2c27f8b0c9537f14ac5afadaa8aeb9355dd00755c3ddee852a95c71625", + "language": "MATLAB", + "lines": 106, + "truncated": false, + "block": 9, + "row": 4453 + }, + { + "path": "preproc/drrobust/rstep.m", + "sha256": "e0cadcdbdb78f5a4f58ffa40c9a5b1467a443f9c1744450fea93b74900b9a5fd", + "language": "MATLAB", + "lines": 152, + "truncated": false, + "block": 9, + "row": 4683 + }, + { + "path": "preproc/drrobust/scorediagplot.m", + "sha256": "9a5444dc98682401aa1f28c5a5e7c95ae9573d6f3054e2f0facbd7c968b7bdab", + "language": "MATLAB", + "lines": 126, + "truncated": false, + "block": 9, + "row": 4834 + }, + { + "path": "preproc/drrobust/screeplot.m", + "sha256": "8ee70c23172005c069f99d12e45b2a1edc8539d9017349848605c3eb819f9435", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 9, + "row": 3910 + }, + { + "path": "preproc/drrobust/silhouetteplot.m", + "sha256": "cfbe4873b158d1bf7bd3c9807e6b95b9f671464e50c63fc1c8e61b0d3d4be9b7", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3651 + }, + { + "path": "preproc/drrobust/simcaplot.m", + "sha256": "5498c7cd007c045cf8bc0b19b138a8e90842eb7bb0848c5c41b171c14fc84056", + "language": "MATLAB", + "lines": 169, + "truncated": false, + "block": 9, + "row": 5043 + }, + { + "path": "preproc/drrobust/stdnormal_inv.m", + "sha256": "90cdf27143c2f3c6d64c85332e266ffbd585b6c0204753fe693995c19a702e7d", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3868 + }, + { + "path": "preproc/drrobust/tree.m", + "sha256": "86146988da28b5ba8b5ef79bb7aff2aa507d13476c2cb4ae9c4915cd6bed51d9", + "language": "MATLAB", + "lines": 558, + "truncated": false, + "block": 9, + "row": 5674 + }, + { + "path": "preproc/drrobust/twopoints.m", + "sha256": "527bf69f27b3eb5df94e4092182ecb693ff8c40658ea16905b66b2049cac5eaa", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 9, + "row": 4012 + }, + { + "path": "preproc/drrobust/unimcd.m", + "sha256": "1a3b3cc4ae3eadb51210c40d3ef9ae591a092d7ca2971b90e80e844bb9a7e5f1", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 9, + "row": 4337 + }, + { + "path": "preproc/drrobust/uniran.m", + "sha256": "882d14fe8767a551af9ef9afc4f0ca78ce67aad3a847f3af3cc0308c0fd3dc02", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3142 + }, + { + "path": "preproc/drrobust/updatecov.m", + "sha256": "7707ee72ac2faf31828fb9d14a425ebe535de8bff22944d17022fef380c41110", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 4082 + }, + { + "path": "preproc/drrobust/weightmecov.m", + "sha256": "e5c2465d695108e0a5dd1e55cd68eeba81e34735a50b4ec6d114168ccf87f721", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3620 + }, + { + "path": "preproc/drtoolbox/Contents.m", + "sha256": "f631d1074929fd23bc18480b38cd7de66fff43ad7378290e7397e884e99a90be", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3846 + }, + { + "path": "preproc/drtoolbox/bhtsne.py", + "sha256": "4d4e80a8beebc27ea4eea1063dca8c2f46528796928ab91852645c7f63c1b2ac", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 9, + "row": 10185 + }, + { + "path": "preproc/drtoolbox/compute_mapping.m", + "sha256": "327ee8baf7cbf7d5c2382f58b9ec3a08aa48a285d4c938ae633b186d75a3b8d2", + "language": "MATLAB", + "lines": 426, + "truncated": false, + "block": 9, + "row": 5782 + }, + { + "path": "preproc/drtoolbox/drgui.m", + "sha256": "760e8b44065026f0bfc299c49188f365065f7f31254796b6f0596741956b5d03", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 9, + "row": 3327 + }, + { + "path": "preproc/drtoolbox/fast_tsne.m", + "sha256": "72f126f338c331dbf7e0f0744cf1a3975f63d9609c7eb7a17f1b1f4957dcb219", + "language": "MATLAB", + "lines": 111, + "truncated": false, + "block": 9, + "row": 4993 + }, + { + "path": "preproc/drtoolbox/generate_data.m", + "sha256": "f1e9bc9aa3eed15213fe6e11ba6c2b633e78241fcc00cd52b9453c86446f68c2", + "language": "MATLAB", + "lines": 133, + "truncated": false, + "block": 9, + "row": 5069 + }, + { + "path": "preproc/drtoolbox/intrinsic_dim.m", + "sha256": "12f55c153a69dc418b1be532f4d55ba893ab07352a2cdaaa0b1a1f10b7226d2e", + "language": "MATLAB", + "lines": 241, + "truncated": false, + "block": 9, + "row": 5465 + }, + { + "path": "preproc/drtoolbox/mexall.m", + "sha256": "2e6cd4e4a6505b308f56d72079c02ce0df1a113ecba3aecc4038836b5760f60a", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 4001 + }, + { + "path": "preproc/drtoolbox/out_of_sample.m", + "sha256": "d0af435dcf399afc8ade528ad58a153aa9da71b0fa09064299225b6c31f310d8", + "language": "MATLAB", + "lines": 250, + "truncated": false, + "block": 9, + "row": 5505 + }, + { + "path": "preproc/drtoolbox/out_of_sample_est.m", + "sha256": "b452deb9f6408b5bb23d190dea54a113031c5b79b52b9e94f8e5babb272b081e", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 9, + "row": 4319 + }, + { + "path": "preproc/drtoolbox/prewhiten.m", + "sha256": "2aa5cc6e637a2f390046e4fd4c15afc06e56b16c3241fcedb3a712f17d28ed60", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3735 + }, + { + "path": "preproc/drtoolbox/reconstruct_data.m", + "sha256": "a9d6cc67e85f891d96d3802b3c7663987dfda86e1db4dc8f4dec593640be1f4c", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 9, + "row": 4190 + }, + { + "path": "preproc/drtoolbox/reconstruction_error.m", + "sha256": "1d460b5a09484a9acdc9768f140f3989b13c9911d7c39959c0f904bedabc180e", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 4440 + }, + { + "path": "preproc/drtoolbox/sptree.cpp", + "sha256": "e1d0872d40f01b99b31e7125d871dbf936076733bc59f0db937a820d031b882d", + "language": "C++", + "lines": 428, + "truncated": false, + "block": 9, + "row": 842 + }, + { + "path": "preproc/drtoolbox/sptree.h", + "sha256": "da91f151d358fcbb8a18c0fadefb6780db789ecb8d42ac998f8f2349c8ea7b55", + "language": "C/C++", + "lines": 115, + "truncated": false, + "block": 9, + "row": 1518 + }, + { + "path": "preproc/drtoolbox/techniques/L2_distance.m", + "sha256": "6d76cbc50f1649f1694b3ba08489c3673ec97cc664bfe4a6d7eb02151fb528f4", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4328 + }, + { + "path": "preproc/drtoolbox/techniques/autoencoder_ea.m", + "sha256": "6648004b059ac499ffc76ee433fa3610c6c33914de3dfa1f2ee5fdbef3ca43a2", + "language": "MATLAB", + "lines": 148, + "truncated": false, + "block": 9, + "row": 5326 + }, + { + "path": "preproc/drtoolbox/techniques/backprop.m", + "sha256": "a3335643d8a2da46636755ed5bf14ec9d23bb4e963a8987edc986ff906e280b0", + "language": "MATLAB", + "lines": 86, + "truncated": false, + "block": 9, + "row": 4654 + }, + { + "path": "preproc/drtoolbox/techniques/backprop_gradient.m", + "sha256": "b2f1b85436d667916728a840899bbc7f2986f4e8469c3ccf031ecb12a1595064", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 4570 + }, + { + "path": "preproc/drtoolbox/techniques/cca.m", + "sha256": "eb46e050851b35921f206b8840cb5e82c324ea699fec24b92ebfb71c9a4fc00b", + "language": "MATLAB", + "lines": 413, + "truncated": false, + "block": 9, + "row": 5682 + }, + { + "path": "preproc/drtoolbox/techniques/cfa.m", + "sha256": "7846b1aa6709ec28512ee04e987016413e698b63db68b8509e07151fde036068", + "language": "MATLAB", + "lines": 189, + "truncated": false, + "block": 9, + "row": 5263 + }, + { + "path": "preproc/drtoolbox/techniques/cg_update.m", + "sha256": "3682d21dda1fc0a1327d0e863c89d92ca92d99aba9e77d5d3af02bf659c2b860", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 9, + "row": 4774 + }, + { + "path": "preproc/drtoolbox/techniques/charting.m", + "sha256": "e9f0b9fdd1e13a82cdefa61681c422b51429979c6451aed4ad6680c722c4ba3a", + "language": "MATLAB", + "lines": 86, + "truncated": false, + "block": 9, + "row": 4637 + }, + { + "path": "preproc/drtoolbox/techniques/checkgrad.m", + "sha256": "8d1cb90d23d419e3f9de06657716d6840bf660aff1210629130f119f38c1ab0e", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4204 + }, + { + "path": "preproc/drtoolbox/techniques/combn.m", + "sha256": "e01131de93f4ddbaaa70cf8c6e56c9d3964099b2a4debb38a54831f8f8967412", + "language": "MATLAB", + "lines": 104, + "truncated": false, + "block": 9, + "row": 4544 + }, + { + "path": "preproc/drtoolbox/techniques/components.m", + "sha256": "a5e0c26bbc126966e0a12d8d022026c0d75b0612b4f6d13e4ebd1328e736dc42", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 4046 + }, + { + "path": "preproc/drtoolbox/techniques/compute_recon_err.m", + "sha256": "69b4dea17745c3e2b82df5526981cbd5dd7549b915268347b1a25150b9908acd", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 9, + "row": 4214 + }, + { + "path": "preproc/drtoolbox/techniques/computegr.c", + "sha256": "a4eb0707153243092588170bd1825e1733b17eefc2f00fa1c28336a3db707487", + "language": "C", + "lines": 124, + "truncated": false, + "block": 9, + "row": 28 + }, + { + "path": "preproc/drtoolbox/techniques/csdp.m", + "sha256": "803c3d4bdbf61541b9e924acc0f9810792fb9276768d9624f7ad2dd1a0644f8f", + "language": "MATLAB", + "lines": 217, + "truncated": false, + "block": 9, + "row": 5242 + }, + { + "path": "preproc/drtoolbox/techniques/d2p.m", + "sha256": "41fd5fd6d8218a3a18e1e99cf8019dcb90c60302562662e9a5659a0c01625b88", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 9, + "row": 4722 + }, + { + "path": "preproc/drtoolbox/techniques/diffusion_maps.m", + "sha256": "563754bcffa002904091dda98747de6e734004fccb8b84d8f858c53c592c0f32", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 4122 + }, + { + "path": "preproc/drtoolbox/techniques/dijk.m", + "sha256": "b954c4a3f22ab3da2f50abac05e5ffa7539bb4abe15b29109b75b4b87820d1b8", + "language": "MATLAB", + "lines": 121, + "truncated": false, + "block": 9, + "row": 4756 + }, + { + "path": "preproc/drtoolbox/techniques/dijkstra.cpp", + "sha256": "3535ee3048e9614c5401fb73bd35c28a9fbf4c6b42d99597768adb21f787d1c5", + "language": "C++", + "lines": 1054, + "truncated": false, + "block": 9, + "row": 992 + }, + { + "path": "preproc/drtoolbox/techniques/dijkstra.m", + "sha256": "ca02bafa7fa2486117970441be031e5a63864c8bcc4be13e4ec30338e4ce7f1d", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 9, + "row": 4305 + }, + { + "path": "preproc/drtoolbox/techniques/em_pca.m", + "sha256": "72b0c2496418bb595436dbdc0abef2c5bcbaa5155d93f1f85d7695e35f602fa9", + "language": "MATLAB", + "lines": 103, + "truncated": false, + "block": 9, + "row": 4709 + }, + { + "path": "preproc/drtoolbox/techniques/fa.m", + "sha256": "c30a4ea125f5db3d4e6b97928c44fb4956c2090e1b2d178525e975120dc0f163", + "language": "MATLAB", + "lines": 69, + "truncated": false, + "block": 9, + "row": 4208 + }, + { + "path": "preproc/drtoolbox/techniques/fastmvu.m", + "sha256": "b4392dbb046c2eb5f3f82fffcd9d9c01824c9fd121894c9e060642156658e930", + "language": "MATLAB", + "lines": 120, + "truncated": false, + "block": 9, + "row": 4970 + }, + { + "path": "preproc/drtoolbox/techniques/fibheap.h", + "sha256": "55a908858a33ea4d4d56c1a03ff4b60acb380ea661c265c40436e1dfc4f27826", + "language": "C/C++", + "lines": 106, + "truncated": false, + "block": 9, + "row": 1417 + }, + { + "path": "preproc/drtoolbox/techniques/find_nn.c", + "sha256": "0e100340514fb5e342c0a84f1cfda0586cdaadc3ce10b90c91671310addf2804", + "language": "C", + "lines": 111, + "truncated": false, + "block": 9, + "row": 36 + }, + { + "path": "preproc/drtoolbox/techniques/find_nn.m", + "sha256": "d165c4d62a9f9aebff687ba1e1be6f481ae185490f7346d71916c6846129fd09", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 9, + "row": 4488 + }, + { + "path": "preproc/drtoolbox/techniques/find_nn_adaptive.m", + "sha256": "20b3f5f9c82e17e7ddcf5aa0308c43597334c12320acc91483e2530b501052e6", + "language": "MATLAB", + "lines": 98, + "truncated": false, + "block": 9, + "row": 4593 + }, + { + "path": "preproc/drtoolbox/techniques/gda.m", + "sha256": "29b3a05c253faa39c42b3dc7ad4106c0edecbdc6ebf41f2742d711581e1cec81", + "language": "MATLAB", + "lines": 119, + "truncated": false, + "block": 9, + "row": 4761 + }, + { + "path": "preproc/drtoolbox/techniques/gplvm.m", + "sha256": "488cc6e23f9a664baf280cb85a6851e53837f6c72678f63151910ee299ffba2d", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3875 + }, + { + "path": "preproc/drtoolbox/techniques/gplvm_grad.m", + "sha256": "f1d2008c56b54ddd07a5a1a905faa5b6cad9f77679e245646424339c05b02111", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 3945 + }, + { + "path": "preproc/drtoolbox/techniques/gram.m", + "sha256": "e2fb7a939eee6f90e662bc742597db4498ea24ce4760c9e33e27a4ea00666092", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 9, + "row": 4279 + }, + { + "path": "preproc/drtoolbox/techniques/hill_obj.m", + "sha256": "4093caa04ec9030356fc20291fe2c964611d725de0ed9f6a6ff90af4d01ce85e", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3494 + }, + { + "path": "preproc/drtoolbox/techniques/hillclimber2c.m", + "sha256": "4804227e7955de0eb71bd7b32d6a4c63d188d4b7afdec5dce96d7817210e3b38", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3727 + }, + { + "path": "preproc/drtoolbox/techniques/hlle.m", + "sha256": "e246bf172828aaf9e0f4632cc59a25352328bb6eff763a5d2520a3abaaa678bf", + "language": "MATLAB", + "lines": 130, + "truncated": false, + "block": 9, + "row": 4903 + }, + { + "path": "preproc/drtoolbox/techniques/infermfa.m", + "sha256": "d7a333313b9a018ec0aad2ec9e75d982eb1439c297eaa2edce6e13d59c3623eb", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 4144 + }, + { + "path": "preproc/drtoolbox/techniques/isomap.m", + "sha256": "996813b4cc0857d5231e9632646ba857e82326ecf85f6b04536743c772666ff5", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 4429 + }, + { + "path": "preproc/drtoolbox/techniques/jdqr.m", + "sha256": "04f17d1a62852012279e369e0ebad6da6e258eec14a0f81477b323a17da16fe2", + "language": "MATLAB", + "lines": 2441, + "truncated": false, + "block": 9, + "row": 5998 + }, + { + "path": "preproc/drtoolbox/techniques/jdqz.m", + "sha256": "db2995c49ca2908423d94dbd82357cc180efb3bf78840e773e53125f969b1be6", + "language": "MATLAB", + "lines": 2507, + "truncated": false, + "block": 9, + "row": 6007 + }, + { + "path": "preproc/drtoolbox/techniques/kernel_function.c", + "sha256": "f4aed0451e08aa50888f593232fe6ff0c7fb217c8b64f4cd750194759b6dadad", + "language": "C", + "lines": 253, + "truncated": false, + "block": 9, + "row": 86 + }, + { + "path": "preproc/drtoolbox/techniques/kernel_function.m", + "sha256": "f50183cb55619385b1ec938ebc3d1f76521158972e7284ee8adaa8bc98463c2d", + "language": "MATLAB", + "lines": 152, + "truncated": false, + "block": 9, + "row": 5121 + }, + { + "path": "preproc/drtoolbox/techniques/kernel_pca.m", + "sha256": "f25615e46f1a17bd0631301a5b574a7e16e4ddd831e9d11c6355e085c506ce86", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 9, + "row": 4921 + }, + { + "path": "preproc/drtoolbox/techniques/landmark_isomap.m", + "sha256": "71641dabd026a56a6989e00ddc101693a25450c57079909258b089946600aa52", + "language": "MATLAB", + "lines": 98, + "truncated": false, + "block": 9, + "row": 4639 + }, + { + "path": "preproc/drtoolbox/techniques/laplacian_eigen.m", + "sha256": "068b3dca6a2be75d7035cf7c56f03e0b2af897d8a3986c734b2813fee1ed3acf", + "language": "MATLAB", + "lines": 113, + "truncated": false, + "block": 9, + "row": 4757 + }, + { + "path": "preproc/drtoolbox/techniques/lda.m", + "sha256": "082f9ebacd4717a5952eb8fce27b6cac577df9006570da514f5654f8e86f6377", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 9, + "row": 4369 + }, + { + "path": "preproc/drtoolbox/techniques/llc.m", + "sha256": "1464b06157872d72b0d7e39d0460329719240de3ab850ef9ca44f38b7fe0768c", + "language": "MATLAB", + "lines": 112, + "truncated": false, + "block": 9, + "row": 4902 + }, + { + "path": "preproc/drtoolbox/techniques/lle.m", + "sha256": "2f72334c05c858013b9ac4cc3f06dcf1bbe518201b7c0a7ffa9f7d4cef99c088", + "language": "MATLAB", + "lines": 133, + "truncated": false, + "block": 9, + "row": 4986 + }, + { + "path": "preproc/drtoolbox/techniques/lltsa.m", + "sha256": "3a9b5819c40e6afc54f250294652e87fad7f235685c1daad7e2e0b0b420591bb", + "language": "MATLAB", + "lines": 105, + "truncated": false, + "block": 9, + "row": 4672 + }, + { + "path": "preproc/drtoolbox/techniques/lmnn.m", + "sha256": "a63a031bfd1f8fec58bac596d78c6620a77bfb99992e2cd5436a69a8c4bfcbc5", + "language": "MATLAB", + "lines": 145, + "truncated": false, + "block": 9, + "row": 5125 + }, + { + "path": "preproc/drtoolbox/techniques/lmvu.m", + "sha256": "017f6f9ea2ab746a928f17e6056e0bbace13ffd7c4de0d6b99eec73116c2acbf", + "language": "MATLAB", + "lines": 293, + "truncated": false, + "block": 9, + "row": 5446 + }, + { + "path": "preproc/drtoolbox/techniques/lpp.m", + "sha256": "d798f8fe07ca2b4de2a527166a0872bf4ebc0ece3563f86ce3c9e0568ee6c946", + "language": "MATLAB", + "lines": 99, + "truncated": false, + "block": 9, + "row": 4626 + }, + { + "path": "preproc/drtoolbox/techniques/ltsa.m", + "sha256": "94c9a608b5bb63c60c458181e362780a29f85322bf9f70875ae0367e05f350d2", + "language": "MATLAB", + "lines": 104, + "truncated": false, + "block": 9, + "row": 4696 + }, + { + "path": "preproc/drtoolbox/techniques/mcml.m", + "sha256": "b8f5d53a6b6fa70f149173a6ae8e9b2cf8c61282636c2f8d29c230f7b6563a99", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 9, + "row": 4354 + }, + { + "path": "preproc/drtoolbox/techniques/mcml_grad.m", + "sha256": "f826d6f9999c10c39e4dfa29faaf418cfa420499bb759768699beb009d648860", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 3903 + }, + { + "path": "preproc/drtoolbox/techniques/mds.m", + "sha256": "927f5ba1a68b4b56c80bcab2a35a6d191eb70576577e6ad8995baf62887232ee", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3666 + }, + { + "path": "preproc/drtoolbox/techniques/mexCCACollectData.c", + "sha256": "a8bd0b875a6477f1f82fc56e6bc820fe879a8b0847ac6b16a446685358930b8a", + "language": "C", + "lines": 281, + "truncated": false, + "block": 9, + "row": 94 + }, + { + "path": "preproc/drtoolbox/techniques/mexCCACollectData2.c", + "sha256": "b058b6ce1ebca3af055acb281ec39456dd57431fe459c801aa7ff535ab9d2214", + "language": "C", + "lines": 231, + "truncated": false, + "block": 9, + "row": 77 + }, + { + "path": "preproc/drtoolbox/techniques/mgs.m", + "sha256": "7e824159be598bcfff827aabf0ff9c6fabf1a476a273b7f568ef7cc0694c41a3", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3664 + }, + { + "path": "preproc/drtoolbox/techniques/minimize.m", + "sha256": "c79a2430a3f9c2d9d65e5bdece392ac7e1e48857c86cf3d700b048703187ff3c", + "language": "MATLAB", + "lines": 156, + "truncated": false, + "block": 9, + "row": 5428 + }, + { + "path": "preproc/drtoolbox/techniques/mppca.m", + "sha256": "6a9430f394e29a9e3d474edfcdcfee6071d0f9e27488e3287c52422aa93b92b8", + "language": "MATLAB", + "lines": 124, + "truncated": false, + "block": 9, + "row": 5029 + }, + { + "path": "preproc/drtoolbox/techniques/mvu_x.m", + "sha256": "86b8359ed9ebe12ae078c19f4dfef6563768fe9bbfd61951727ef0fe2f923917", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 3991 + }, + { + "path": "preproc/drtoolbox/techniques/mvu_x_grad.m", + "sha256": "7e3c80c93f7070f6b4cac2189bbae2278f20a5e5559eeead6cee3847c1e49ce2", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3909 + }, + { + "path": "preproc/drtoolbox/techniques/nca.m", + "sha256": "12fd237ce03a8f8560ff2ba403a4524182fc604b5e5a56aa5d005c36e85f85d4", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 9, + "row": 4365 + }, + { + "path": "preproc/drtoolbox/techniques/nca_lin_grad.m", + "sha256": "ca0822898bdb96a1cc4c7ef3022a29dd9f6d684d7c1d28fcb4aa31f8cde90c1c", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 9, + "row": 4280 + }, + { + "path": "preproc/drtoolbox/techniques/nk_tsne.m", + "sha256": "bdc443e9a094b69bc85c726302e58a1fcc2557ef53764ed7adf4e6c8d2724b3e", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 9, + "row": 4225 + }, + { + "path": "preproc/drtoolbox/techniques/npe.m", + "sha256": "4190e633dda08e13b8bcca58189ac1b41777276cb330375067151850a2287f16", + "language": "MATLAB", + "lines": 122, + "truncated": false, + "block": 9, + "row": 4893 + }, + { + "path": "preproc/drtoolbox/techniques/pca.m", + "sha256": "7d8aa2e874433a30d568a6fd30836ebd6c16d08714d169247e3218ed949ee453", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 9, + "row": 4340 + }, + { + "path": "preproc/drtoolbox/techniques/readsol.m", + "sha256": "cd5e0e2329adbfdf2374b5f713c7fb4b61993432466668c59de4afb32787c4e9", + "language": "MATLAB", + "lines": 210, + "truncated": false, + "block": 9, + "row": 4898 + }, + { + "path": "preproc/drtoolbox/techniques/recon_data_from_autoenc.m", + "sha256": "1f6d75ba695c3c85de30fb25cabf432c3fd498c48298ea4c9d3428af0bd67e52", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3714 + }, + { + "path": "preproc/drtoolbox/techniques/recon_data_from_autoenc2.m", + "sha256": "cd421f9cc73c570eb8976e428dd0cc331531056c220d9ce3eb6e589362103fc9", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3715 + }, + { + "path": "preproc/drtoolbox/techniques/reconstruction_derivative.m", + "sha256": "a854533916058f670e75f83ae00a7de506704faf56e95219a0a6520ca9c03c15", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 4276 + }, + { + "path": "preproc/drtoolbox/techniques/roll_out.m", + "sha256": "fdd33082acccdb748d3863236116caa4fe7d1be01bba31e4a6670a9db1fd7c69", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 9, + "row": 3662 + }, + { + "path": "preproc/drtoolbox/techniques/run_data_through_autoenc.m", + "sha256": "6177025034b97c6b986720a564ef045d8a30444457ad0700b22e3661512ae61e", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3934 + }, + { + "path": "preproc/drtoolbox/techniques/run_data_through_network.m", + "sha256": "814a12ac78a58301176845437f860c77c8251bb04586a8b0b13eb812defbe3f9", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3638 + }, + { + "path": "preproc/drtoolbox/techniques/run_llc.m", + "sha256": "1b12ac12e8136636925c7f9fdc3cbb471bc0181c7745cdc02ba765f0752c154e", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4356 + }, + { + "path": "preproc/drtoolbox/techniques/sammon.m", + "sha256": "c653911fe3518cbd11e7f088d1cf465be3aeb02e7f8c865dc55df762721d7c8d", + "language": "MATLAB", + "lines": 205, + "truncated": false, + "block": 9, + "row": 5345 + }, + { + "path": "preproc/drtoolbox/techniques/sdecca2.m", + "sha256": "4de82e5682f87b9639e012304e2c8f26e078669eae5aef4c40c967681ac21533", + "language": "MATLAB", + "lines": 218, + "truncated": false, + "block": 9, + "row": 5350 + }, + { + "path": "preproc/drtoolbox/techniques/sne.m", + "sha256": "e1aa8cabc20998abc588b7e635d4fa8f65f16102180805984b096ab642a5d827", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 9, + "row": 4651 + }, + { + "path": "preproc/drtoolbox/techniques/sparse_nn.m", + "sha256": "762337c2d0a5a4365ed4d32a4e2a4c7835068369f1c197458f4ec7164ae3be32", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3637 + }, + { + "path": "preproc/drtoolbox/techniques/spe.m", + "sha256": "1e41493c4688c858a7a8e4d6040adff095cc58b39cb18a2c034d8fb5c28544bf", + "language": "MATLAB", + "lines": 97, + "truncated": false, + "block": 9, + "row": 4775 + }, + { + "path": "preproc/drtoolbox/techniques/sym_sne.m", + "sha256": "45a8f66cb38908258b8844ce26120d312a824bf9b58d03d1107c365d7cbc9cd1", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 9, + "row": 4649 + }, + { + "path": "preproc/drtoolbox/techniques/train_autoencoder.m", + "sha256": "8360920914ba0c43a698ce4b464f4f5ab3323fe7637b2131023b66bb9deb1c8f", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 9, + "row": 4273 + }, + { + "path": "preproc/drtoolbox/techniques/train_deep_autoenc.m", + "sha256": "22c1ef360298f6cb65f104e84cd522905004c109607914cbc6e0772a75681f09", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 9, + "row": 4367 + }, + { + "path": "preproc/drtoolbox/techniques/train_grbm.m", + "sha256": "01029a63d086ccbef67c14c81c7122ae324b87e4058425fa0eb3057233bd0313", + "language": "MATLAB", + "lines": 111, + "truncated": false, + "block": 9, + "row": 4990 + }, + { + "path": "preproc/drtoolbox/techniques/train_lin_rbm.m", + "sha256": "d1071be0f74fe1804ce2e6bcbfb5868047c99d9294ccad819e2ba569d43ede16", + "language": "MATLAB", + "lines": 113, + "truncated": false, + "block": 9, + "row": 4918 + }, + { + "path": "preproc/drtoolbox/techniques/train_rbm.m", + "sha256": "dc733c79f62e645bd8f7bcffb1bf7b5fde5b0e10656b16517eab0eb53fbb3f95", + "language": "MATLAB", + "lines": 106, + "truncated": false, + "block": 9, + "row": 4927 + }, + { + "path": "preproc/drtoolbox/techniques/tsne.m", + "sha256": "20bd896de56459139988bf7fb031b6ac0d717c52acaa97309a4860127160f8be", + "language": "MATLAB", + "lines": 93, + "truncated": false, + "block": 9, + "row": 4648 + }, + { + "path": "preproc/drtoolbox/techniques/tsne_d.m", + "sha256": "5a60c80c2b19200a684244033f4fac3f6a60cdb2006fb138d7f56cb613a55906", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4303 + }, + { + "path": "preproc/drtoolbox/techniques/tsne_p.m", + "sha256": "5852c31d00acff274c62ec44d0d525b2169e59b895f9f078290c261dc3cabf6d", + "language": "MATLAB", + "lines": 118, + "truncated": false, + "block": 9, + "row": 5023 + }, + { + "path": "preproc/drtoolbox/techniques/welcome.m", + "sha256": "a12c621ea9f8379c7f3bff3c685b71274286a99b29f8ee8dce8c424edf5506b1", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3703 + }, + { + "path": "preproc/drtoolbox/techniques/writesdpa.m", + "sha256": "c17ac10d84922786877fbd4e14b7eae0c98f6f03e90f1ee88f49acdf6c4e70fa", + "language": "MATLAB", + "lines": 403, + "truncated": false, + "block": 9, + "row": 5398 + }, + { + "path": "preproc/drtoolbox/techniques/x2p.m", + "sha256": "d81aff6177889274ac5d3f7e18d66ddb686dd1be4fb32f3ebe3bb68989ad7016", + "language": "MATLAB", + "lines": 104, + "truncated": false, + "block": 9, + "row": 4745 + }, + { + "path": "preproc/drtoolbox/test_toolbox.m", + "sha256": "b013128ea6235593e76b1f3e05b1f2ed13f7ca2b501a0d0895981ecdf14824ff", + "language": "MATLAB", + "lines": 149, + "truncated": false, + "block": 9, + "row": 5110 + }, + { + "path": "preproc/drtoolbox/tsne.cpp", + "sha256": "b732213419cba874417387c64c9a1b3aa69001ad515113c469aa732637589cfb", + "language": "C++", + "lines": 757, + "truncated": false, + "block": 9, + "row": 975 + }, + { + "path": "preproc/drtoolbox/tsne.h", + "sha256": "4b691fa1f0bdcbf00c6f1e291c9b60a091186494fc3216097e62563584d06952", + "language": "C/C++", + "lines": 63, + "truncated": false, + "block": 9, + "row": 1435 + }, + { + "path": "preproc/drtoolbox/vptree.h", + "sha256": "f04b688ae620e0deeb63e5cdb0c6a127492a02b5207a2dd8a68e4f4dc0eaf94e", + "language": "C/C++", + "lines": 272, + "truncated": false, + "block": 9, + "row": 1700 + }, + { + "path": "preproc/drtools/EuDist2.m", + "sha256": "0c88d48209f990fdf0686efa1a9bb2efb37221f744b7ea5022b7d5e19aa2de31", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 9, + "row": 3760 + }, + { + "path": "preproc/drtools/IsoP.m", + "sha256": "3cb2dfda101b495775e95b4747911e4328ac8e0f1f0266ca16934a58f71d1924", + "language": "MATLAB", + "lines": 254, + "truncated": false, + "block": 9, + "row": 5374 + }, + { + "path": "preproc/drtools/KLPP.m", + "sha256": "6048e92b4389f6d41770f21ccf59790ae33d997a08b0fc6bc4f86d9b66875354", + "language": "MATLAB", + "lines": 132, + "truncated": false, + "block": 9, + "row": 4908 + }, + { + "path": "preproc/drtools/KPCA.m", + "sha256": "8a7c8dd33b9706ee99ea313b520a50fdb61afb6f72bdc20920ca0767fa3c43e9", + "language": "MATLAB", + "lines": 120, + "truncated": false, + "block": 9, + "row": 4716 + }, + { + "path": "preproc/drtools/KSR.m", + "sha256": "5f36649661c981cbd71b99bde572af28049ff3330a5ee80b4beb61e83f8ac5ec", + "language": "MATLAB", + "lines": 215, + "truncated": false, + "block": 9, + "row": 5201 + }, + { + "path": "preproc/drtools/KSR_caller.m", + "sha256": "fad9b0b6ba8436c7bcc7d7c0a5d817536da5a133d5e6e3e72274ff651fc54a55", + "language": "MATLAB", + "lines": 355, + "truncated": false, + "block": 9, + "row": 5558 + }, + { + "path": "preproc/drtools/LGE.m", + "sha256": "8f92b8e10bedc61c5934011b4eb1e57801f0c2e0990d612e703486a5cc169d3d", + "language": "MATLAB", + "lines": 370, + "truncated": false, + "block": 9, + "row": 5537 + }, + { + "path": "preproc/drtools/LPP.m", + "sha256": "969b299a8b467f731f2eee198117262aec732ab6e0e7317877f83a298b873b4f", + "language": "MATLAB", + "lines": 166, + "truncated": false, + "block": 9, + "row": 5020 + }, + { + "path": "preproc/drtools/LSDA.m", + "sha256": "9832f8532b17a806fa1fa7f2e799ee5ccbf07a72cacc95a1395f57262f234aa9", + "language": "MATLAB", + "lines": 204, + "truncated": false, + "block": 9, + "row": 5158 + }, + { + "path": "preproc/drtools/LaplacianScore.m", + "sha256": "544bdb535275d2c160b08ab908d2cf9cd4c9fb3a0561ed6151115b7a8fb0d98f", + "language": "MATLAB", + "lines": 112, + "truncated": false, + "block": 9, + "row": 4490 + }, + { + "path": "preproc/drtools/MMP.m", + "sha256": "56dcf7877b9e577bebc5a7276dd6c5804ec6699db7bd462bc2de5b2d6241e164", + "language": "MATLAB", + "lines": 172, + "truncated": false, + "block": 9, + "row": 5005 + }, + { + "path": "preproc/drtools/NPE.m", + "sha256": "18c3e3224092d83b063c3f405d154fa2266ccf4fb927c6d55370a3b628309ac2", + "language": "MATLAB", + "lines": 236, + "truncated": false, + "block": 9, + "row": 5359 + }, + { + "path": "preproc/drtools/OLGE.m", + "sha256": "fa4332b2583135d83b1d830fcbfd813cff733fb06c872aa762858bcbf0efebb9", + "language": "MATLAB", + "lines": 352, + "truncated": false, + "block": 9, + "row": 5553 + }, + { + "path": "preproc/drtools/OLPP.m", + "sha256": "14b0c30f10f3365beeab5b9989f9038463a2e086f75825635c4001626a4642ae", + "language": "MATLAB", + "lines": 141, + "truncated": false, + "block": 9, + "row": 4943 + }, + { + "path": "preproc/drtools/PCA.m", + "sha256": "48c0763d77e97d77d8df55bf3ddf82e87ea48485d45be8e71c730c0dc1ec23bc", + "language": "MATLAB", + "lines": 135, + "truncated": false, + "block": 9, + "row": 4793 + }, + { + "path": "preproc/drtools/SDA.m", + "sha256": "c4c47acafb32f0773cb003dabda38f6a2bf035ef1e8d8187949e3728ad89389a", + "language": "MATLAB", + "lines": 222, + "truncated": false, + "block": 9, + "row": 5078 + }, + { + "path": "preproc/drtools/SDA_MR.m", + "sha256": "c54d00176ae8cec680c6d12a273fa60fc4bdb4be37b4c406a8c9134968cd7110", + "language": "MATLAB", + "lines": 174, + "truncated": false, + "block": 9, + "row": 5103 + }, + { + "path": "preproc/drtools/SR.m", + "sha256": "0ec9a24307407694fc323273ef0f41ce3d50b5e9c762431d57070285a47758a8", + "language": "MATLAB", + "lines": 360, + "truncated": false, + "block": 9, + "row": 5586 + }, + { + "path": "preproc/drtools/SR_caller.m", + "sha256": "ada3ee46f0a1359ebe4eb9f8fb57d2b6ac8157908d482f8b5455ddeece0def09", + "language": "MATLAB", + "lines": 353, + "truncated": false, + "block": 9, + "row": 5555 + }, + { + "path": "preproc/drtools/TensorLGE.m", + "sha256": "d7612d38917476480c19a90e62be9dbe876834b89e53a84d8e8ad978111fb3e6", + "language": "MATLAB", + "lines": 209, + "truncated": false, + "block": 9, + "row": 5130 + }, + { + "path": "preproc/drtools/TensorLPP.m", + "sha256": "7159cd8a9f2951d9d62a21ca6a542e6422b0312b4663780346a807fcb15b1ed1", + "language": "MATLAB", + "lines": 112, + "truncated": false, + "block": 9, + "row": 4799 + }, + { + "path": "preproc/drtools/constructKernel.m", + "sha256": "f7804f6c8731cd94f747f8567125e32f4f1bb8387724322a937cebd9873b53b6", + "language": "MATLAB", + "lines": 101, + "truncated": false, + "block": 9, + "row": 4430 + }, + { + "path": "preproc/drtools/constructW.m", + "sha256": "5a403de6b1036c873de4b55518732e5994d9b1a95e4a1fcbc7185180b1ac8005", + "language": "MATLAB", + "lines": 533, + "truncated": false, + "block": 6, + "row": 18690 + }, + { + "path": "preproc/drtools/lars.m", + "sha256": "bfed4082769282be9003e11c44c59713250bd99cd2b25ad6c56804bd403cc95c", + "language": "MATLAB", + "lines": 305, + "truncated": false, + "block": 9, + "row": 5481 + }, + { + "path": "preproc/drtools/lsqr2.m", + "sha256": "b6226b13036e7fba5999f2eb4b25d9d819d471b3c544070164e2f88b2f72bc73", + "language": "MATLAB", + "lines": 346, + "truncated": false, + "block": 9, + "row": 5642 + }, + { + "path": "preproc/drtools/nnmf_lin.m", + "sha256": "edd8a51f00106bbc49d4e9743dff27b41e952faa1086f0d2179f8a4aa59d25b8", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 9, + "row": 4236 + }, + { + "path": "preproc/fastICA_testing.m", + "sha256": "eb9c9298b07ef4bb5303e3337570a6af8091ae5b4089192109171d5fa41c67d8", + "language": "MATLAB", + "lines": 89, + "truncated": false, + "block": 9, + "row": 4891 + }, + { + "path": "preproc/larsen.m", + "sha256": "a3b7dbdd24f932e28f649b2f8029240721cd18c6775ffa4fb2eb01741d3560d7", + "language": "MATLAB", + "lines": 204, + "truncated": false, + "block": 9, + "row": 5172 + }, + { + "path": "preproc/mi/condentropy.m", + "sha256": "33627b725ef4e0628e85de8ee93ba9ff266ec2f5f65b42b488c0d1feac8bd03d", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3670 + }, + { + "path": "preproc/mi/condmutualinfo.m", + "sha256": "4191ea81f63a77afec4a7f6e2c7e13179fde949dafadb53f39a2859204624b76", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 3818 + }, + { + "path": "preproc/mi/demo_mi.m", + "sha256": "d8a8029336ee9758414820395451192b777426e9c705a3064d19977f199bd648", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3459 + }, + { + "path": "preproc/mi/elementmexheader.h", + "sha256": "91181baa13bd9ff95f1f3c3086eefebd62a82eecb8eea1971b79cb57f71876a5", + "language": "C/C++", + "lines": 22, + "truncated": false, + "block": 9, + "row": 1141 + }, + { + "path": "preproc/mi/entropy.m", + "sha256": "14fb7f4f97ef4b9f688ca7b0966d02f0255d047f7663e0f658e78830861663c7", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3479 + }, + { + "path": "preproc/mi/estcondentropy.cpp", + "sha256": "6690821d6223f0ff3a3b3914cd33a73e61bb8921d44b523bf50f4151852fa68c", + "language": "C++", + "lines": 74, + "truncated": false, + "block": 9, + "row": 265 + }, + { + "path": "preproc/mi/estentropy.cpp", + "sha256": "f382ff31dd7aa80cd6092be9cc86f848921771b5ae6d6c3969ffc2085cbdbede", + "language": "C++", + "lines": 53, + "truncated": false, + "block": 9, + "row": 207 + }, + { + "path": "preproc/mi/estjointentropy.cpp", + "sha256": "e1c3f9cd0ddebf6bd269521007d9711a87e953c6366e948b1b960c291e5c863b", + "language": "C++", + "lines": 65, + "truncated": false, + "block": 9, + "row": 228 + }, + { + "path": "preproc/mi/estmutualinfo.cpp", + "sha256": "9ce29e73fbb01d64ad9bfe8a062b273f304ef23f43b045452a0f284cf1751664", + "language": "C++", + "lines": 132, + "truncated": false, + "block": 9, + "row": 423 + }, + { + "path": "preproc/mi/estpa.cpp", + "sha256": "6b1e4a0dadab21774230ce22a7a001856771d97199cc81fa6cf4b06428356e69", + "language": "C++", + "lines": 183, + "truncated": false, + "block": 9, + "row": 521 + }, + { + "path": "preproc/mi/estpab.cpp", + "sha256": "8a6401cdd23298e560b14eca20d2f035327d377a9ebef335672398640890d7a5", + "language": "C++", + "lines": 222, + "truncated": false, + "block": 9, + "row": 596 + }, + { + "path": "preproc/mi/findjointstateab.cpp", + "sha256": "76bc35fd152324828c631c700e9e897bd2f8a8418987d7d0a40dad1b28d0a375", + "language": "C++", + "lines": 280, + "truncated": false, + "block": 9, + "row": 647 + }, + { + "path": "preproc/mi/jointentropy.m", + "sha256": "9919860cdc1c518d31d90543197791541bcd8e8df6100d2b18790ed6e0b374bf", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3602 + }, + { + "path": "preproc/mi/makeosmex.m", + "sha256": "1c0ea5696854f1cc972998ce4f6f8eff40eeb661fb2aa7201415048de6bcb73e", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3357 + }, + { + "path": "preproc/mi/mergemultivariables.m", + "sha256": "53a419c099e0f54c84a341f79bedb13c78bf0e45b4230c67ab6b3a282fa84d95", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3719 + }, + { + "path": "preproc/mi/miinclude.h", + "sha256": "c696c15912e4dd120adae7638ae445bf5bd06b0b47de4565f5a6722bb9acb67b", + "language": "C/C++", + "lines": 23, + "truncated": false, + "block": 9, + "row": 1143 + }, + { + "path": "preproc/mi/mrmr_mibase_d.m", + "sha256": "c2f789b3580d71ad35caa5c998989584e649bfe636e81806ae8fa52fe2ca7734", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3136 + }, + { + "path": "preproc/mi/mrmr_mid_d.m", + "sha256": "3cabfbbe3a588c5e1c5f27bea8e7ef88e9fa9bed06e0dc1dffcd828ae9031220", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 9, + "row": 3943 + }, + { + "path": "preproc/mi/mrmr_miq_d.m", + "sha256": "1f66870bc82b3b8135927d2641a0b15d1bfa40101c964511aef74e49b5266d49", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 9, + "row": 3893 + }, + { + "path": "preproc/mi/mutualinfo.m", + "sha256": "2f4ec3d0ff977181434a29a20e877a5cfac34ee8c7264546c9a3738ecb53646b", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3360 + }, + { + "path": "preproc/nk_AddParam.m", + "sha256": "f73708fc4189ca4e1aec74e116e22e7d3f941aa38388669aee2ac347f8377dfb", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 3896 + }, + { + "path": "preproc/nk_AdjForCovarsUsingLocalModels.m", + "sha256": "7d1e529dcf6ee9aac28d60bf5cf8f27bf6394333fdbf9d283b30243f2b0ee4e2", + "language": "MATLAB", + "lines": 198, + "truncated": false, + "block": 9, + "row": 5227 + }, + { + "path": "preproc/nk_AdjForCovarsUsingPCA.m", + "sha256": "bbc1c693abde1a6306e9962204801f0c88ce006e72b662d43f0466c3995c291d", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 9, + "row": 4386 + }, + { + "path": "preproc/nk_AdjustData.m", + "sha256": "f1c33655c950532881dce8266c19877f63056888979d3da8ee02407e06ace94e", + "language": "MATLAB", + "lines": 115, + "truncated": false, + "block": 9, + "row": 4525 + }, + { + "path": "preproc/nk_Check4LabelInteraction.m", + "sha256": "b5442d3bcd639d32497354c9a06448b0659298cca4a9f337edb055b5c204631f", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 9, + "row": 2973 + }, + { + "path": "preproc/nk_CreatePreprocTemplate.m", + "sha256": "3ad91abbe8071e6cd297f445c38b40bcffc1494a2085bbb55fb22ac120e47f18", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3967 + }, + { + "path": "preproc/nk_ExtractCovs.m", + "sha256": "0f9767460e102cc97b7d592e715abd780d89fad4b310ef00cd09cb107ca754f1", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3160 + }, + { + "path": "preproc/nk_GenPreML.m", + "sha256": "5e4eb03653f7f6a25d04211be7a38f54b41a5850a7dc7d6ea4970bd9829c2d4b", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3542 + }, + { + "path": "preproc/nk_GenPreprocSequence.m", + "sha256": "6465b5422c4280665b278b42605715c46fedb3b7a437a6bd8e7506726fc9ecd1", + "language": "MATLAB", + "lines": 623, + "truncated": false, + "block": 9, + "row": 5929 + }, + { + "path": "preproc/nk_MultiCentIntensNorm.m", + "sha256": "c3e27bdafd958c53a021b163839f989cedc513c71e5d48ac0025f2032c51487c", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4477 + }, + { + "path": "preproc/nk_MultiCentIntensNorm2.m", + "sha256": "1142599246a3584a842fcf49b4376e6510195a0c5bbb613234e67980c0f741eb", + "language": "MATLAB", + "lines": 111, + "truncated": false, + "block": 9, + "row": 4933 + }, + { + "path": "preproc/nk_MultiCentIntensNorm2_CV.m", + "sha256": "cc50167fbdc41a12d71aed786e67e47bb7e20978afba34726a2a3510ad36db2e", + "language": "MATLAB", + "lines": 111, + "truncated": false, + "block": 9, + "row": 4924 + }, + { + "path": "preproc/nk_Normalize2Mean.m", + "sha256": "1cbc36f482c71c49df2134e10e7409684f65de99371d2fb2a391fd1a6a52b904", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3067 + }, + { + "path": "preproc/nk_NumberCmdStr.m", + "sha256": "8fe5a477d3e3a047618acb7db4ad5ad0c3a0b687b26606b53241bebf0df812b5", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3235 + }, + { + "path": "preproc/nk_ParamReplicator.m", + "sha256": "4be4ae253c9de6d25552012b7ff40beebdcac6be586ba8643b3441e0b3b866ad", + "language": "MATLAB", + "lines": 122, + "truncated": false, + "block": 9, + "row": 4822 + }, + { + "path": "preproc/nk_PartialCorrelationsObj.m", + "sha256": "0684a8ebc0b736d640317c99874595d873a2cb87315a0fef2da2e8d6b3fdfb46", + "language": "MATLAB", + "lines": 213, + "truncated": false, + "block": 9, + "row": 5319 + }, + { + "path": "preproc/nk_PerfADASYN.m", + "sha256": "11198905960695c482fda16d27e20de062b3960e05b7bc01a5dc44bb2018b95b", + "language": "MATLAB", + "lines": 132, + "truncated": false, + "block": 9, + "row": 4874 + }, + { + "path": "preproc/nk_PerfANOVAObj.m", + "sha256": "908af31a4751afc56b7d0f851041e182fb9e9d82e7a2d13d348abca18f1d172a", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3824 + }, + { + "path": "preproc/nk_PerfANOVAObjNew.m", + "sha256": "ce7afe3b609f7390ff5f10f6b78b1408b883f39dcab134492d8e8345a459bfd6", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3779 + }, + { + "path": "preproc/nk_PerfANOVAObjOld.m", + "sha256": "784b19305e85de0e8bf63375ddec0c78f1c77626778caeedb7565d0a4abc41bd", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3733 + }, + { + "path": "preproc/nk_PerfAdjForCovarsUsingPCAObj.m", + "sha256": "985cbcf2a05f60311e614c87624444fa0269eb0a6be5b5d0b823ae36ff8776da", + "language": "MATLAB", + "lines": 237, + "truncated": false, + "block": 9, + "row": 5469 + }, + { + "path": "preproc/nk_PerfCommonFeatExtraction.m", + "sha256": "b124c23bf5e10e7572b5e94c046631d50a543dfcb927e0fefc6bac005ef05630", + "language": "MATLAB", + "lines": 93, + "truncated": false, + "block": 9, + "row": 4567 + }, + { + "path": "preproc/nk_PerfCompConnectivity.m", + "sha256": "c99942517f671e8104c698ccb982b5e139fb1ad8cab4889eaa569ea1dfb80c40", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3555 + }, + { + "path": "preproc/nk_PerfDevMapObj.m", + "sha256": "6bf5d1d2d13ef3cbfe4883b65e87e1c625e6eb9e9b7412d2b4aedb31529d78d5", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4325 + }, + { + "path": "preproc/nk_PerfDiscretizeObj.m", + "sha256": "876238c5c9dc9243b2c35e29b43d57771b72cfeb7a6bb50111e62bc5162ad791", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3740 + }, + { + "path": "preproc/nk_PerfElimZeroObj.m", + "sha256": "874231a4ce12d5c191eb3aab84431c453070eba1358e1537670d090f6854ea55", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 9, + "row": 4403 + }, + { + "path": "preproc/nk_PerfExtDimObj.m", + "sha256": "7ab5759880c9b93b069386b78dc5366d219d4e8168c7737522ec2e16d2bb6853", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 3927 + }, + { + "path": "preproc/nk_PerfFeatRankObj.m", + "sha256": "ec5dbf2ffd9bb6205f62cca1bbf21da4db28db67326c7d1748631380b6505ddd", + "language": "MATLAB", + "lines": 210, + "truncated": false, + "block": 9, + "row": 5443 + }, + { + "path": "preproc/nk_PerfICA.m", + "sha256": "2317749f5aa4e434051473fcf8db39a202e5e1bc25fc50ab20bb3a9eac3725a0", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 9, + "row": 4097 + }, + { + "path": "preproc/nk_PerfImputeLabelObj.m", + "sha256": "75264897b142201998050bbc39b4d1e311f52214b7742b0424d615aaa3ffb01b", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 9, + "row": 4519 + }, + { + "path": "preproc/nk_PerfImputeObj.m", + "sha256": "576f91286897434499b327e9c9cf2fe6d2df8011ad463eb1df82e15795833a35", + "language": "MATLAB", + "lines": 201, + "truncated": false, + "block": 9, + "row": 5485 + }, + { + "path": "preproc/nk_PerfNormObj.m", + "sha256": "c374f4478ebd239ba57cd856c7ef6b00b413535015471bf29fbb93d1e4dce4e0", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4646 + }, + { + "path": "preproc/nk_PerfPLSObj.m", + "sha256": "fa386bc6bde379c6b50e886e9956f844d3ebccb354c6b94d9089a64f083ffa11", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3789 + }, + { + "path": "preproc/nk_PerfPreprocess.m", + "sha256": "b8f742041f9bab507b7019d5b2b26aef22605be8f2ae1d58b5b3f62906565967", + "language": "MATLAB", + "lines": 677, + "truncated": false, + "block": 9, + "row": 5891 + }, + { + "path": "preproc/nk_PerfPreprocessMeta.m", + "sha256": "7502db05dae2ec7a61f7ed6173157c3fe5987d66bd4bba42d0026b67e315459b", + "language": "MATLAB", + "lines": 498, + "truncated": false, + "block": 9, + "row": 5835 + }, + { + "path": "preproc/nk_PerfPreprocessObj_core.m", + "sha256": "e968efa42fa1c8fe4b13e99e2794add5df2e195dfa50af85b45e7c9dc1ed1d0d", + "language": "MATLAB", + "lines": 1208, + "truncated": false, + "block": 9, + "row": 5950 + }, + { + "path": "preproc/nk_PerfPreprocessSpatial.m", + "sha256": "bd3497716df05db637a167c4fa7d38ce65ff07543f88173e4c178e326699a987", + "language": "MATLAB", + "lines": 130, + "truncated": false, + "block": 9, + "row": 5199 + }, + { + "path": "preproc/nk_PerfRedObj.m", + "sha256": "564bc64e0c539a65a3f89eca2725a4b8ebcb75e2e9b98c364f18ac82890c71e1", + "language": "MATLAB", + "lines": 274, + "truncated": false, + "block": 9, + "row": 5583 + }, + { + "path": "preproc/nk_PerfRemMeanDiffObj.m", + "sha256": "c9cddd8027d92afed68f66d9bbeef04dd7864c32fc28eb8555e3126af6c51ffc", + "language": "MATLAB", + "lines": 133, + "truncated": false, + "block": 9, + "row": 5030 + }, + { + "path": "preproc/nk_PerfRemMeanDiffObjOld.m", + "sha256": "f03db84fd0ec957ef4fb46f7927af37c7ad3bf7fead1316395af981e0c06ecfd", + "language": "MATLAB", + "lines": 118, + "truncated": false, + "block": 9, + "row": 4947 + }, + { + "path": "preproc/nk_PerfRemMeanDiffObj_CV.m", + "sha256": "7cf3f8fed83181666dd027567b682a0f7cb7d8df3ba5b2c765fbaf2d16e32072", + "language": "MATLAB", + "lines": 130, + "truncated": false, + "block": 9, + "row": 5009 + }, + { + "path": "preproc/nk_PerfScaleObj.m", + "sha256": "34f69fb4075a05f092d8b9c8cc623fa48e5c1da2c16897cadf862495c35c4686", + "language": "MATLAB", + "lines": 94, + "truncated": false, + "block": 9, + "row": 4836 + }, + { + "path": "preproc/nk_PerfSpatFilt.m", + "sha256": "e15bf9df46bee9ef3bcf4143be16219c0c0507e1f29f4243ff258b7535e4652f", + "language": "MATLAB", + "lines": 91, + "truncated": false, + "block": 9, + "row": 4724 + }, + { + "path": "preproc/nk_PerfStandardizeObj.m", + "sha256": "6c4aefe069e625f4dbc1f5112fdc66b48e28fabfeaf9179c034e97c3900afd78", + "language": "MATLAB", + "lines": 412, + "truncated": false, + "block": 9, + "row": 5639 + }, + { + "path": "preproc/nk_PerfUnitNormObj.m", + "sha256": "fdc82e2f2c07d28fc846db920d744843057d461d0faf7fb95a7592c5a1701c01", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 9, + "row": 4219 + }, + { + "path": "preproc/nk_PerfWActObj.m", + "sha256": "14157e9853b183cb60030c113111eae3677ec43743531af349271b77f0e5e665", + "language": "MATLAB", + "lines": 128, + "truncated": false, + "block": 9, + "row": 5182 + }, + { + "path": "preproc/nk_PerfZeroOut.m", + "sha256": "d1299de0870253f4d2f2e597f51f4094251660de52d66f26766ba019518f70d8", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 9, + "row": 3227 + }, + { + "path": "preproc/nk_PreprocDataForEval.m", + "sha256": "23f8f2138e9ab70950e123e99d4700617b4d56d532a5767444b1a145a7acaf9a", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3575 + }, + { + "path": "preproc/nk_PreprocessPrep.m", + "sha256": "7f2087968c76712e2554646c377d24a01e9a1e507d2eb76e1a1724bea655b0fa", + "language": "MATLAB", + "lines": 417, + "truncated": false, + "block": 9, + "row": 5778 + }, + { + "path": "preproc/nk_Regress.m", + "sha256": "f0fa8fc99d4e8888b8f200ffe245c31047940cf9135e6331a5a19645d198c7e6", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 9, + "row": 3522 + }, + { + "path": "preproc/nk_Scale.m", + "sha256": "2ddd4b15a2f0d67d0b53242f5f0063e1fc9d2e79cb07e7ffd4a302ddced3a233", + "language": "MATLAB", + "lines": 89, + "truncated": false, + "block": 9, + "row": 4597 + }, + { + "path": "preproc/nk_ScaleData.m", + "sha256": "b5d4f42185cbf439195bb1e9aa9e2d916f2f24e38b50fb62fe61c979f5182cbc", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 9, + "row": 4259 + }, + { + "path": "preproc/nk_SmoothMaskInActParam.m", + "sha256": "0adf2028e5b10b37bfb76d543a3a61ddc154691f899df4e2a1fdd4a1e02dfa9f", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 9, + "row": 3350 + }, + { + "path": "preproc/nk_SortComponents.m", + "sha256": "21a2f4963a35eaeffc87942a36a77bf88a1f5f37497b7ba3f3db5a8bc2bb0eba", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 9, + "row": 4267 + }, + { + "path": "preproc/nk_SpatFilt.m", + "sha256": "71293f35143c1521567b79535f80e4f345ede33891fbccce9fa4ae3eb13d0a80", + "language": "MATLAB", + "lines": 105, + "truncated": false, + "block": 9, + "row": 4731 + }, + { + "path": "preproc/nk_TestPerfCompConnectivity.m", + "sha256": "38e3e8b8f4144a61497d18dad4811e69672c5039f6f194e80852a13211d5c044", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3835 + }, + { + "path": "preproc/nk_WeightData.m", + "sha256": "7379348c89256afdeeea9384139dcab3dc42a8b4cde4908655c5d4371c3b5554", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3738 + }, + { + "path": "preproc/nmfv1_4/EQP.m", + "sha256": "8a89acb7375e677549253f1353a7530f7fffcafe8e6372ad66f3f158301f384a", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3707 + }, + { + "path": "preproc/nmfv1_4/EQP0.m", + "sha256": "0d04b4c7f8d825fe86cd28a574e45872dd42cdedcf937f20b214dfda60e2a93f", + "language": "MATLAB", + "lines": 77, + "truncated": false, + "block": 9, + "row": 4130 + }, + { + "path": "preproc/nmfv1_4/FriedmanTest.m", + "sha256": "e1b9062672c97b510d1b7ff467d852a9c12ca38a218f46304d3354de093a6875", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 4421 + }, + { + "path": "preproc/nmfv1_4/JSM.m", + "sha256": "3e222a53f7c50768906be3124abb6096e077181427315c773d6f0683bf25c2b7", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 9, + "row": 3660 + }, + { + "path": "preproc/nmfv1_4/MAT2DAT.m", + "sha256": "ec5dd4c9826bf3582164478b5b779993da292004594b57057ddb5ef58733af44", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 4056 + }, + { + "path": "preproc/nmfv1_4/NMFBicHeatMap.m", + "sha256": "00c469ae039703016a44b0a52c42eb2b53778112cfa0f4f8ab9f0c798d9f7f25", + "language": "MATLAB", + "lines": 185, + "truncated": false, + "block": 9, + "row": 5264 + }, + { + "path": "preproc/nmfv1_4/NMFCluster.m", + "sha256": "90ed99c8a13af4abdecd5e78a3e276028e77b941187396a37979a909b1aeef49", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 9, + "row": 4400 + }, + { + "path": "preproc/nmfv1_4/NMFHeatMap.m", + "sha256": "cd57a8a656e5c9004ee4102d15b190b4f3d013d3f8f640d5a5e0bae50b0183a8", + "language": "MATLAB", + "lines": 181, + "truncated": false, + "block": 9, + "row": 5202 + }, + { + "path": "preproc/nmfv1_4/NNQPActiveSet.m", + "sha256": "b8e2df42d6639b1291ba138d9c072ecc7f29b2071c91405f6c42112ae93e1d00", + "language": "MATLAB", + "lines": 110, + "truncated": false, + "block": 9, + "row": 4915 + }, + { + "path": "preproc/nmfv1_4/SB.m", + "sha256": "756f3930aaa227873517270a8987583ecf35dc87efd4bcbe067fc61147d5b0e5", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 9, + "row": 3885 + }, + { + "path": "preproc/nmfv1_4/SW.m", + "sha256": "eb7b0b3b589d06293b689883e3b35aa1068cf141ba9a8385dd5558381bba1b04", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3786 + }, + { + "path": "preproc/nmfv1_4/biCluster.m", + "sha256": "aa7a2d073fb20349f433367d8c49fda8e47894636b79fcb5fccfafd3989d6039", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 9, + "row": 4824 + }, + { + "path": "preproc/nmfv1_4/bootstrapnnlsClassifier.m", + "sha256": "ac2777bd6e6b2c8a7064d202bd008249fa157a5ab3e7302f4cdb96c670a454b8", + "language": "MATLAB", + "lines": 120, + "truncated": false, + "block": 9, + "row": 5025 + }, + { + "path": "preproc/nmfv1_4/changeClassLabels01.m", + "sha256": "b577f3f6d0a44bfa086bf46189eec73d159acbaae4ee426e39b4f0121d7bc65b", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 4045 + }, + { + "path": "preproc/nmfv1_4/chooseBestk.m", + "sha256": "8cc2dbc82f741ffc2d811a2f3ac6be2f984a5a17f7906325d08aefa46e1d3b0a", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 9, + "row": 4729 + }, + { + "path": "preproc/nmfv1_4/classification.m", + "sha256": "7fce8b4a64823607df12833e60d84bbe3374943bfe25ca8b4822b5086c356cc8", + "language": "MATLAB", + "lines": 183, + "truncated": false, + "block": 9, + "row": 5507 + }, + { + "path": "preproc/nmfv1_4/classificationPredict.m", + "sha256": "ed4fb0239a68920bcfa2a225e0926ed40fb3fe46f45cbe6dfa065472773d102c", + "language": "MATLAB", + "lines": 155, + "truncated": false, + "block": 9, + "row": 5175 + }, + { + "path": "preproc/nmfv1_4/classificationTrain.m", + "sha256": "6ccf74c1b65fc77ac2723e3a2d02696388a99947063faeb4bd8be83097eb60bb", + "language": "MATLAB", + "lines": 236, + "truncated": false, + "block": 9, + "row": 5427 + }, + { + "path": "preproc/nmfv1_4/computeKernelMatrix.m", + "sha256": "497b3c1a01c63a506e078cd5a804841ea7ad2a1053e6d7c129ec2e7ef380f9c5", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 9, + "row": 3974 + }, + { + "path": "preproc/nmfv1_4/computeMetaSample.m", + "sha256": "0149621e08a0e7cb54012f1f50200f50fb717f38c034203988595d610db7629e", + "language": "MATLAB", + "lines": 86, + "truncated": false, + "block": 9, + "row": 4572 + }, + { + "path": "preproc/nmfv1_4/constrainedQPActive.m", + "sha256": "e3b68bcfc7d0f7b0f9d8b89cc3a7160dce5f72e1c594bd51e8115d0474c62071", + "language": "MATLAB", + "lines": 116, + "truncated": false, + "block": 9, + "row": 4910 + }, + { + "path": "preproc/nmfv1_4/convexnmfrule.m", + "sha256": "d713bf159365cbbe51b966607d7a481248b41b599e6fa9161640ebb96b069922", + "language": "MATLAB", + "lines": 105, + "truncated": false, + "block": 9, + "row": 4748 + }, + { + "path": "preproc/nmfv1_4/convexnmfruletest.m", + "sha256": "b5dc805ecf163040d4dee915ac8e9445cacdad071a51686efd2cdf63b52c2862", + "language": "MATLAB", + "lines": 95, + "truncated": false, + "block": 9, + "row": 4632 + }, + { + "path": "preproc/nmfv1_4/cvExperiment.m", + "sha256": "b635881fa51b868617f9e8b6196b2f1d25652154730e15784e11253bf6adcaa1", + "language": "MATLAB", + "lines": 119, + "truncated": false, + "block": 9, + "row": 5032 + }, + { + "path": "preproc/nmfv1_4/dispersionCoefficient.m", + "sha256": "1e97b05fa68ccb5eea73bb963fb4d39187f5b963fb818edfbea55c4c8d95c389", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3667 + }, + { + "path": "preproc/nmfv1_4/ds2nfu.m", + "sha256": "1312c7fd5e7e00d1a48fb9956a8fc65e27cceb7e2cb65dd49fa029f6fc7a74dc", + "language": "MATLAB", + "lines": 106, + "truncated": false, + "block": 9, + "row": 4565 + }, + { + "path": "preproc/nmfv1_4/dynamicSystems_kernel.m", + "sha256": "6e7dd97a31862475d051deca833a8c9404cce2fa3342e4e122450e30d9512aa1", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 9, + "row": 4245 + }, + { + "path": "preproc/nmfv1_4/dynamicSystems_kernel2.m", + "sha256": "17576441f0a2770d8d7639c99a95c93c11cc4dabd0395bef0f9f9255c1eaf97d", + "language": "MATLAB", + "lines": 91, + "truncated": false, + "block": 9, + "row": 4464 + }, + { + "path": "preproc/nmfv1_4/dynamic_kernel.m", + "sha256": "fad74504a3c3334f68137a2867c7d04fd5d225d1b7a5a94f4a426f85b3064a2a", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4281 + }, + { + "path": "preproc/nmfv1_4/entropyCluster.m", + "sha256": "c044e7c026ea3f1cc52e1c7dd1bb5be3cfd54f4c357229106e80f98b21cf1f7a", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4129 + }, + { + "path": "preproc/nmfv1_4/estimatePQRS.m", + "sha256": "4157dc20b0f45484b5e4b04b9c79634c7d83b22bbec1d654f99995416c84083f", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 9, + "row": 4047 + }, + { + "path": "preproc/nmfv1_4/exampleBiCluster.m", + "sha256": "ff0374d138e6e050ec8c65cc7868e8b84d61002561e11055c5f78c4606e4b5ce", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 9, + "row": 3947 + }, + { + "path": "preproc/nmfv1_4/exampleBioProcessGS.m", + "sha256": "f576ba87a0334ebdfc22313514af59ca6c38e607e1a0fb7fce2525004defd2a5", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 9, + "row": 4418 + }, + { + "path": "preproc/nmfv1_4/exampleBioProcessMYC.m", + "sha256": "142e722ca3425bfed085f17ee760e498655d94f7d254a4cb4d3cfdbe170e78cd", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 9, + "row": 4027 + }, + { + "path": "preproc/nmfv1_4/exampleBioProcessTSYeast.m", + "sha256": "be36811a613469447418ea49b5b4f19045a2555f5abbfc9fe8d4364931f1e56b", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 4089 + }, + { + "path": "preproc/nmfv1_4/exampleClassification.m", + "sha256": "baebcba65c20d473d74f8a2a759742e04cb8ef947d6a8f0ef055c445446cf20e", + "language": "MATLAB", + "lines": 157, + "truncated": false, + "block": 9, + "row": 5164 + }, + { + "path": "preproc/nmfv1_4/exampleCluster.m", + "sha256": "4dde311564bb8c359052ec20c9aa6486a1666e3644e1636a3c6ab69e8d7f0e36", + "language": "MATLAB", + "lines": 77, + "truncated": false, + "block": 9, + "row": 4274 + }, + { + "path": "preproc/nmfv1_4/exampleClusterWeighted.m", + "sha256": "7094b81375a8ed0972f12d9f2edb7c16b10b22179bf794fbe8fa257fe34f1ec6", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 3918 + }, + { + "path": "preproc/nmfv1_4/exampleFeatureExtraction.m", + "sha256": "834faf3183bd4e985e6a1e29e925e43257b9610d6d30b4a431fb58c1bdbe4231", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4373 + }, + { + "path": "preproc/nmfv1_4/exampleFeatureExtractionKernel.m", + "sha256": "ee488cddc1c2de3dda2c312ae2f9439c983d36a98a5c893faa4c338e910bdcae", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 4431 + }, + { + "path": "preproc/nmfv1_4/exampleFeatureSelection.m", + "sha256": "ac4fceed19d0d3fdcf3395dfc387002afce5d4eaaef97b0fecc7350c72af2735", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 9, + "row": 4469 + }, + { + "path": "preproc/nmfv1_4/exampleFitLearnCurve.m", + "sha256": "b384b9d2e082344145ed50ef713c6c341a10c61551d94c6b9f26d8fe29945c65", + "language": "MATLAB", + "lines": 106, + "truncated": false, + "block": 9, + "row": 4690 + }, + { + "path": "preproc/nmfv1_4/exampleFriedmanTest.m", + "sha256": "ab2c36495944ac26ef658fbcb3c9508870d56f5e93a2761d856150464882479d", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 4374 + }, + { + "path": "preproc/nmfv1_4/fcnnls.m", + "sha256": "8b700771de620533bb1e21b49e67fade3e5224d0a827536cf187ddcb3916036e", + "language": "MATLAB", + "lines": 129, + "truncated": false, + "block": 9, + "row": 5022 + }, + { + "path": "preproc/nmfv1_4/featSel.m", + "sha256": "c1a2f2665e5086b50e6712c6c7679a548935f3ff4830c9b90ce1173aa83887cc", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 9, + "row": 4368 + }, + { + "path": "preproc/nmfv1_4/featSelNMF.m", + "sha256": "c88e9151f63f0e53f2a30d36a36f3f56d2e55c33f96108b2685564418c0239f6", + "language": "MATLAB", + "lines": 104, + "truncated": false, + "block": 9, + "row": 4821 + }, + { + "path": "preproc/nmfv1_4/featureExtractionTrain.m", + "sha256": "b56db4b0e927779fcd3f244d8c75cd9f2203f2eab1d7880b1f76f4ca4d8709d8", + "language": "MATLAB", + "lines": 245, + "truncated": false, + "block": 9, + "row": 5513 + }, + { + "path": "preproc/nmfv1_4/featureExtrationTest.m", + "sha256": "f02abe2d87f9676bb60b306d8f74c4d6c7cab34912057f826aba6e425b53175b", + "language": "MATLAB", + "lines": 172, + "truncated": false, + "block": 9, + "row": 5246 + }, + { + "path": "preproc/nmfv1_4/featureFilterNMF.m", + "sha256": "09b98f2df695e1484db6924d042191cc6b6335c3fb86e003b48bb3b50be72067", + "language": "MATLAB", + "lines": 154, + "truncated": false, + "block": 9, + "row": 5092 + }, + { + "path": "preproc/nmfv1_4/genCode.m", + "sha256": "9ad420022c0af571e550307e591b9a4ff8aa07d3b7db83f7529bf7c20f698597", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3232 + }, + { + "path": "preproc/nmfv1_4/geometricMean.m", + "sha256": "a459f2ed8ce48895c0f2a7c296fc4004c6677a5f1c3c8dbb4e5e3c2485dc5340", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 9, + "row": 3725 + }, + { + "path": "preproc/nmfv1_4/getBestScores.m", + "sha256": "de5608ca4079d80093754780b81c44c6420e239a9bdc432a745c760cd0c9e18f", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3864 + }, + { + "path": "preproc/nmfv1_4/getClusters.m", + "sha256": "0eed3b4aafc465d25c24ab928054eb031cd642e57589f9338a4f8d936a2eaa8e", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 9, + "row": 4133 + }, + { + "path": "preproc/nmfv1_4/getLabel.m", + "sha256": "b6e9774ee62077d848cf97cfc48f1d5951d1d619b9be5c3838d1e93871c352f3", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3781 + }, + { + "path": "preproc/nmfv1_4/getRank.m", + "sha256": "a0a30c37a5ea3efd6450c95bf9f689c7a258a30754288c069260f83b734b8f0b", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3176 + }, + { + "path": "preproc/nmfv1_4/getRelationMatrix.m", + "sha256": "4aa5fe4d46de59fb04a913fd7b934610a80316f16b43286475d0b421f3927d56", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3648 + }, + { + "path": "preproc/nmfv1_4/gridSearchUniverse.m", + "sha256": "09760ab5e5bb6bd5d92f046fa1b7cc959f4fa8d66e3a72ad994d820417b7f614", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 9, + "row": 4309 + }, + { + "path": "preproc/nmfv1_4/innerProduct.m", + "sha256": "0e00324d972fbe400ae7db6bac76689fdea371ca8de0e4721d66efb41db2c194", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3291 + }, + { + "path": "preproc/nmfv1_4/invPowerLaw.m", + "sha256": "7cd231711964d6c9acc5531bdf675f2ccb71b9df8d3e594fb52566ec65264d80", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 2946 + }, + { + "path": "preproc/nmfv1_4/iszero.m", + "sha256": "eea5bba504815f9c06111ff4f48fa794376fe7ab7d97a6f5ca07573ec62bc335", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3678 + }, + { + "path": "preproc/nmfv1_4/kernelLinear.m", + "sha256": "f2a32a4b24958e530813624d61a1ce324b0dd775e59c5a05fe7d84355f20b354", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 6, + "row": 6853 + }, + { + "path": "preproc/nmfv1_4/kernelPoly.m", + "sha256": "ede3d3699f3030d07885ff6ddf84557f60ec8b666c895978c61e67c329cfb357", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 6, + "row": 7554 + }, + { + "path": "preproc/nmfv1_4/kernelRBF.m", + "sha256": "4f99290000896b6cd3e2e31683804ad91ab49aa00ef62859120b2857fd07d213", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 6, + "row": 7643 + }, + { + "path": "preproc/nmfv1_4/kernelSigmoid.m", + "sha256": "fe00ff4214e2063bffed49cbe087cda6c9954d29b75aee7f07241269513d6a91", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 6, + "row": 7244 + }, + { + "path": "preproc/nmfv1_4/kernelSparseNMFNNQP.m", + "sha256": "f8b8ceb21d8fc4d9f7b4f63216dd87c3e10e3bf7a5e67214a34b497aad557ed4", + "language": "MATLAB", + "lines": 151, + "truncated": false, + "block": 9, + "row": 4984 + }, + { + "path": "preproc/nmfv1_4/kernelconvexnmf.m", + "sha256": "626b6409a54830a4f36d3fa8c188a8d7e943e95fbf744107b0f358de74598ddb", + "language": "MATLAB", + "lines": 165, + "truncated": false, + "block": 9, + "row": 5111 + }, + { + "path": "preproc/nmfv1_4/kernelnmfdecom.m", + "sha256": "95d85fb706578823c78649c361938ebd158f7305e9078fdd2150d237b57e7a88", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 9, + "row": 4492 + }, + { + "path": "preproc/nmfv1_4/kernelseminmfnnls.m", + "sha256": "9049e192ce71d8881816d43289a3f97f6ba245ee20bf717fc472c8b4e7c4e300", + "language": "MATLAB", + "lines": 141, + "truncated": false, + "block": 9, + "row": 4956 + }, + { + "path": "preproc/nmfv1_4/kernelseminmfrule.m", + "sha256": "74d373d2684820b99881ef53ddd5628678b80b5c2687f07df5aad423485d069b", + "language": "MATLAB", + "lines": 139, + "truncated": false, + "block": 9, + "row": 5040 + }, + { + "path": "preproc/nmfv1_4/kernelsparseseminmfnnls.m", + "sha256": "483716f944e5eeccb4723437b30a5542cba1a86f7a17602b63cbb8e148d8daac", + "language": "MATLAB", + "lines": 134, + "truncated": false, + "block": 9, + "row": 4953 + }, + { + "path": "preproc/nmfv1_4/kfcnnls.m", + "sha256": "fbbc6c989a1769d26d28c711e0ee2da6a8cafd00788db6cb4632478bcda8a3f4", + "language": "MATLAB", + "lines": 128, + "truncated": false, + "block": 9, + "row": 4992 + }, + { + "path": "preproc/nmfv1_4/kfcnnls2.m", + "sha256": "720e934365ee48a7292c63bfec15616affc3b3fb2bfbcd18eb162a5a44a49b10", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 9, + "row": 4913 + }, + { + "path": "preproc/nmfv1_4/knnrule.m", + "sha256": "4c979300a0037f7449c3a95d0aecd3e795de4ed531fd6c9cf8896734caec43e8", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3415 + }, + { + "path": "preproc/nmfv1_4/kurnnls.m", + "sha256": "2b7ce1e71a457c632eb90b8db7701044d59b8125344a09346bb31504854232a4", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 9, + "row": 4509 + }, + { + "path": "preproc/nmfv1_4/l1NNQPActiveSet.m", + "sha256": "5275ff285bf1a275469fc77fadfecb624d98cb285634f72357fd04a16c1524f0", + "language": "MATLAB", + "lines": 142, + "truncated": false, + "block": 9, + "row": 5054 + }, + { + "path": "preproc/nmfv1_4/l1QPActiveSet.m", + "sha256": "302c639bfe781651ad4ff1e3fceaeed246c611493cae45871f8f64368bcc95b4", + "language": "MATLAB", + "lines": 90, + "truncated": false, + "block": 9, + "row": 4670 + }, + { + "path": "preproc/nmfv1_4/learnCurve.m", + "sha256": "be1a8240b8d37bb4ecc574ca625d87474dcf3b6ca98a9f5f17f2878674d020d2", + "language": "MATLAB", + "lines": 77, + "truncated": false, + "block": 9, + "row": 4205 + }, + { + "path": "preproc/nmfv1_4/leaveMOut.m", + "sha256": "b079d2611e67d65d7bf53083092491002f6660e1ac2a3c35ee500d4fda0a9159", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 9, + "row": 3907 + }, + { + "path": "preproc/nmfv1_4/localSVM.m", + "sha256": "bfb67b07bd8b5093a2bbbf9d4e727b17ffecffe7cdb112da04aa40d9958840ef", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 9, + "row": 4209 + }, + { + "path": "preproc/nmfv1_4/logisticRegressPredict.m", + "sha256": "eec7ffcdc3bb64caf6072efb5505c84c248b0f2a472957394c4cbe2da65166d3", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 9, + "row": 4194 + }, + { + "path": "preproc/nmfv1_4/logisticRegressTrain.m", + "sha256": "c9ad9f079f4205594bdb48d106eef7577f95ab2ce49a7ebc6d296f34bf8b6b35", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3697 + }, + { + "path": "preproc/nmfv1_4/lrc.m", + "sha256": "c63d5b3c180e5fe958671dbbbf3bcf54609af0f05c612b44cf7c3d820f59f606", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 9, + "row": 4184 + }, + { + "path": "preproc/nmfv1_4/mat2vec.m", + "sha256": "8c09db97639526dca176874c405aa1c79b32b3c2f3ed35de6ffe549c622789b0", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 9, + "row": 3032 + }, + { + "path": "preproc/nmfv1_4/matrixNorm.m", + "sha256": "c645e85b43f1ba0b20893dcb6d97ca3b26172cbfc720f0cf49bb64a49dfff652", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3578 + }, + { + "path": "preproc/nmfv1_4/mergeOption.m", + "sha256": "80a999d212b558a4ba25262d03863e61e21f45f790863b597aa13b9f971ba722", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3783 + }, + { + "path": "preproc/nmfv1_4/mnmf.m", + "sha256": "fe09f1e5312b51a2c3ef9f74edac3f6c39e6442411ecba1c5dca6048c5f0d8d0", + "language": "MATLAB", + "lines": 114, + "truncated": false, + "block": 9, + "row": 4601 + }, + { + "path": "preproc/nmfv1_4/modSelKM.m", + "sha256": "14fc7f2f554428aadeb3e3542857c826d0b8bbc94d8c6ec1254482a74f651050", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3400 + }, + { + "path": "preproc/nmfv1_4/modelSelectionGammaK.m", + "sha256": "aa48b2ef002d751cdccf624ea464f1b1db98846f7afcdca0e425b4e6ea380b69", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 9, + "row": 4616 + }, + { + "path": "preproc/nmfv1_4/multiClassifiers.m", + "sha256": "9b52d42f69a38637133f8f7b6e32c6e6c2fb28735466d06bbe7227729f3c9847", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4842 + }, + { + "path": "preproc/nmfv1_4/nmf.m", + "sha256": "0e9bc3d49f13c6b5de335ff931891fa9ac9caa4e07fa12786db38069326259a9", + "language": "MATLAB", + "lines": 117, + "truncated": false, + "block": 9, + "row": 5161 + }, + { + "path": "preproc/nmfv1_4/nmfClassifier.m", + "sha256": "0887bd0f29c19d7e42c6ad19a54e497ca24eb20c86cad9308f13d7fc69e89308", + "language": "MATLAB", + "lines": 106, + "truncated": false, + "block": 9, + "row": 4955 + }, + { + "path": "preproc/nmfv1_4/nmfnnls.m", + "sha256": "0bee1820134b9b4f7f674c94ad5c98d590e325abee56de2d5bf36ed531b3ba45", + "language": "MATLAB", + "lines": 94, + "truncated": false, + "block": 9, + "row": 4695 + }, + { + "path": "preproc/nmfv1_4/nmfnnlstest.m", + "sha256": "1a548ce79ec69b11b4f8047d014adc22af824c754b2c9ec76249e58e40a86a1c", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 4009 + }, + { + "path": "preproc/nmfv1_4/nmfrule.m", + "sha256": "1a7d00f7202c276292c9a60ee85a3102badc354d5a2af1e1d61711a39a2bb4bd", + "language": "MATLAB", + "lines": 114, + "truncated": false, + "block": 9, + "row": 4860 + }, + { + "path": "preproc/nmfv1_4/nnlsClassifier.m", + "sha256": "d0916134655d41fe2093b45cfccf519ad51351d289424c5b63ff62290569d31c", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 9, + "row": 4844 + }, + { + "path": "preproc/nmfv1_4/normalizeKernelMatrix.m", + "sha256": "fd842d1fee94a222fce607e648622504cfa55fdee5e41c7fee57d101aa6be5ec", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3140 + }, + { + "path": "preproc/nmfv1_4/normc.m", + "sha256": "3e89a6d4b2773a23277a06b3d1a8bb8a4d6f9029a8c4753e0f08e0da57b5d435", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3292 + }, + { + "path": "preproc/nmfv1_4/normmean0std1.m", + "sha256": "01cc05382c16ec3351d9f8bf5799bbf20eac89029808dd9e8d80072ccb9a9594", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 9, + "row": 3999 + }, + { + "path": "preproc/nmfv1_4/num2cellstr.m", + "sha256": "94e40ef356f610f70ff56665d86c9cea020b152a87c81267772efe670995e01c", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3634 + }, + { + "path": "preproc/nmfv1_4/orthnmfrule.m", + "sha256": "475a2d69e1cdff022473593a4bb747472480a7248fecda56395a3c9fd2a8c5fe", + "language": "MATLAB", + "lines": 113, + "truncated": false, + "block": 9, + "row": 4847 + }, + { + "path": "preproc/nmfv1_4/orthnmfruletest.m", + "sha256": "d08ff3d0671d7c405689a7094e26ef99b8a381e68aa66d14e4fe07355fdeb744", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 9, + "row": 4524 + }, + { + "path": "preproc/nmfv1_4/perform.m", + "sha256": "b0bbea96ffaa4bcef2bf780c6ffae062b4a2f6124a2973fc406a4452eaa6185b", + "language": "MATLAB", + "lines": 136, + "truncated": false, + "block": 9, + "row": 4853 + }, + { + "path": "preproc/nmfv1_4/plotBarError.m", + "sha256": "30fe892b997c71e919b877439838c11885bf1146701ca09fb772fe58914b4bcc", + "language": "MATLAB", + "lines": 89, + "truncated": false, + "block": 9, + "row": 4564 + }, + { + "path": "preproc/nmfv1_4/plotNemenyiTest.m", + "sha256": "26ec02ac0625b664a6c5cf1da565a2dce6ff27676f1487d398970c453b8ec83c", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 9, + "row": 4113 + }, + { + "path": "preproc/nmfv1_4/pseudoinverse.m", + "sha256": "ee0e1bda570cf4e5fca5073c94958373a54134fd330ea6b6a78659dea31fbadd", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 9, + "row": 3873 + }, + { + "path": "preproc/nmfv1_4/purity.m", + "sha256": "a4fc35a739d45bea69a7f38eeab9fafde55b849e070a6165e87eace4a646a6ce", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 9, + "row": 3964 + }, + { + "path": "preproc/nmfv1_4/repetitivenmfClassifier.m", + "sha256": "fbba764431bea4aea96f6a6d24dbe874122a96604cf9abc34894ae67e2093007", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 4608 + }, + { + "path": "preproc/nmfv1_4/searchkernelRange.m", + "sha256": "3559d1235b4ab3301fd4a7ddef41d58ae486b904588007594fbe1ea477d91757", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3908 + }, + { + "path": "preproc/nmfv1_4/seminmfnnls.m", + "sha256": "c705bee0cb8042cb1cadd5ccf734d0fa4fbca71e8ce18b01b8ec5bf13c49df7f", + "language": "MATLAB", + "lines": 91, + "truncated": false, + "block": 9, + "row": 4659 + }, + { + "path": "preproc/nmfv1_4/seminmfnnlstest.m", + "sha256": "fa26dc6fedbc3fe8c08270dbfb51af603b669a87de20009f067cf9d05314ceda", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3699 + }, + { + "path": "preproc/nmfv1_4/seminmfrule.m", + "sha256": "c7fc258f85e8de96d9cf9e3bd1285cf1fe8edf57568a8f1b15f5f93a9895bac0", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 9, + "row": 4478 + }, + { + "path": "preproc/nmfv1_4/seminmfruletest.m", + "sha256": "05fe7805a30ce483c63136896184397765748b127c9d442dc579243ad62a7782", + "language": "MATLAB", + "lines": 69, + "truncated": false, + "block": 9, + "row": 4232 + }, + { + "path": "preproc/nmfv1_4/significantAcc.m", + "sha256": "e5f82252dfa9148c7be03d8e84e8173774279b696bf5342275a6c7f9096b1eb1", + "language": "MATLAB", + "lines": 113, + "truncated": false, + "block": 9, + "row": 4811 + }, + { + "path": "preproc/nmfv1_4/softSVMPredict2.m", + "sha256": "001c917755f56d9ce1cccd81df023e1190a2aca60402df96dc4979974a8a657b", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 9, + "row": 4256 + }, + { + "path": "preproc/nmfv1_4/softSVMTrain2.m", + "sha256": "d5cf7dd8d5166e4d7fba70ee22da2041de732e985c40313ad29f5811ac9766d2", + "language": "MATLAB", + "lines": 128, + "truncated": false, + "block": 9, + "row": 4829 + }, + { + "path": "preproc/nmfv1_4/sparseNMFNNQP.m", + "sha256": "0f874deb7453802ffea9e7159d92a777d1c5d3cc35636a7d72399d9cf947ada6", + "language": "MATLAB", + "lines": 107, + "truncated": false, + "block": 9, + "row": 4678 + }, + { + "path": "preproc/nmfv1_4/sparsenmf2nnqp.m", + "sha256": "e20bb594a8c74c44aa02463127a66ff836807e7115f455f007b3f3485466e6af", + "language": "MATLAB", + "lines": 116, + "truncated": false, + "block": 9, + "row": 4833 + }, + { + "path": "preproc/nmfv1_4/sparsenmf2rule.m", + "sha256": "7bbf227d3ef9cd8b41282ca4b60a6f8cde0c43030b96d11aae65e5dac889182e", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 9, + "row": 4813 + }, + { + "path": "preproc/nmfv1_4/sparsenmfnnls.m", + "sha256": "a3a2bec539cc41bf492975b910db87857728c0cbc3e646d20f9759dd99fcfbd0", + "language": "MATLAB", + "lines": 111, + "truncated": false, + "block": 9, + "row": 4873 + }, + { + "path": "preproc/nmfv1_4/sparsenmfnnlstest.m", + "sha256": "3fc880932b42a43e51a5a62af4ee2ba2402594cdeaeaa508d12dfbf445bd61e1", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 9, + "row": 4254 + }, + { + "path": "preproc/nmfv1_4/sparseseminmfnnls.m", + "sha256": "b93d00fef796c5b325349e976a630d31760332a9a000c8c4a6799968ff9bd2fb", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4586 + }, + { + "path": "preproc/nmfv1_4/sparsity.m", + "sha256": "f7d451bde289f2174b107b159ab94e719762aefb9f705a83d9a4684182fe35e2", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 9, + "row": 3614 + }, + { + "path": "preproc/nmfv1_4/splitTrain2TrainTestSubset.m", + "sha256": "f2392cde245d3fbde4f5929b23e4727938bbb525ebc30df2ed01da3433d6f7b5", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3878 + }, + { + "path": "preproc/nmfv1_4/subspace.m", + "sha256": "d23ecadded7c854ae42ceb8e63bc8897175938c7cd4399c918c2a63e777dbfa3", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4186 + }, + { + "path": "preproc/nmfv1_4/superkernelseminmfnnls.m", + "sha256": "a3c6a0ccb17aaab401857eb15be57e14a8176de14b6abad65daf5a98ba63dba3", + "language": "MATLAB", + "lines": 131, + "truncated": false, + "block": 9, + "row": 4744 + }, + { + "path": "preproc/nmfv1_4/vec2mat.m", + "sha256": "0ec814b67db43a7e43f0b18adee4284e3462b7fe94b2edf160ac8f1da5ac228e", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3072 + }, + { + "path": "preproc/nmfv1_4/vote.m", + "sha256": "9593e92ce01863224af0c9e64d10f86c7be292f9c9ad2fe2f019aa1923de3ebe", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 9, + "row": 3504 + }, + { + "path": "preproc/nmfv1_4/vsmf.m", + "sha256": "2076247ebbf15062ba2732f8a7f18896d6fb256948ce69c6ce17e62d7315eba9", + "language": "MATLAB", + "lines": 226, + "truncated": false, + "block": 9, + "row": 5323 + }, + { + "path": "preproc/nmfv1_4/vsmftest.m", + "sha256": "a4283ba7ac973841558f42e1318578d7e129aa015b15d5fa0fb773c622a0e3d6", + "language": "MATLAB", + "lines": 208, + "truncated": false, + "block": 9, + "row": 5232 + }, + { + "path": "preproc/nmfv1_4/wnmfrule.m", + "sha256": "03481487455516afca1ab7780677b85b4e646660c2aaaa31f5de26a124deec9f", + "language": "MATLAB", + "lines": 110, + "truncated": false, + "block": 9, + "row": 4771 + }, + { + "path": "preproc/nmfv1_4/writeGeneList.m", + "sha256": "8b1ccfe69d91f6cc056418a9ed0a547493ead259799af47b208fbb5e4926b73e", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 9, + "row": 3831 + }, + { + "path": "preproc/nmfv1_4/wvote.m", + "sha256": "b23492b1fc8a9fd6dc53b48a706464b02dd731b14e99aec7edf156d191a2d264", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3536 + }, + { + "path": "preproc/spca.m", + "sha256": "886e6099962882be40dd8dd283bc5a46dd011a501bd4b263690068dee88a2560", + "language": "MATLAB", + "lines": 168, + "truncated": false, + "block": 9, + "row": 5117 + }, + { + "path": "project2InputSpace.m", + "sha256": "b2f2949186b6e205d875e91d8467aa98cbff1f9f9fc6a78dfabc59df4bebe95f", + "language": "MATLAB", + "lines": 132, + "truncated": false, + "block": 9, + "row": 5096 + }, + { + "path": "ranking.m", + "sha256": "73d4b9f66d0bab178eda562ce97da9b0038e9bb72d197100d9acc72262c05419", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 9, + "row": 3165 + }, + { + "path": "resample_image.m", + "sha256": "35935780bb6b651c693ec213b996b123825ae44140fcfc920314429d94737eb6", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 9, + "row": 3311 + }, + { + "path": "resize_img_useTemp_imcalc_NM.m", + "sha256": "e5b5af6993950fa8087c06286dce1df61a3b5c6e7e5f0c6a0ab2ad2e2d00528c", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3832 + }, + { + "path": "rotateticklabel.m", + "sha256": "cfdd205f2a09945ee8c039a4f441e5d1f470aaa58f8dd1604411b2b734b55089", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4083 + }, + { + "path": "scale_matrix.m", + "sha256": "f7b41a9c763bcf84b8ba14dbd05ff64961e46f71057fbf35dc4061629d59e405", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3247 + }, + { + "path": "script_usage/nk_GenGridAct_script.m", + "sha256": "abc1156ba54f2ceb623693130625f9f2244ecccba1a8f50375c351ae62bdcbe5", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 9, + "row": 3840 + }, + { + "path": "script_usage/train_model.m", + "sha256": "86f7ddf4210780f547e56d8f2544b28850b7a602d8a4c562df9311a637f668e6", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3817 + }, + { + "path": "searchindex.js", + "sha256": "7f09f8e1436f4b93bca120cc76007c5ad92df1693a1e8f83c1e37190a80376f1", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 9, + "row": 2122 + }, + { + "path": "simulate_sampleSize.m", + "sha256": "03a809f678fb0bd4b1d10a5430af6a04c68ef746961688ef7e4f357e2e9ee419", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 2951 + }, + { + "path": "simulation/GaussDist.m", + "sha256": "e41a1ece16fcebb5b2f8ec255e6d3f6a251e0c37687b276f6980371c58fd6e12", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 9, + "row": 2964 + }, + { + "path": "simulation/nk_CreatPredFeat.m", + "sha256": "ea76fb3528297510a0804c255f4de8519ca860f33e3290ef06b3101685cf015a", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3704 + }, + { + "path": "simulation/nk_DataLabel_config.m", + "sha256": "cbd0283d35d742dd60fca2c73b142558c6d096ccf985e5129c2489f604c9dc5b", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3282 + }, + { + "path": "simulation/nk_SimulateML.m", + "sha256": "766256461cb6593eadbb303e25f6bead8d59fd020265fd1f9ef210b65f27bb53", + "language": "MATLAB", + "lines": 381, + "truncated": false, + "block": 9, + "row": 5654 + }, + { + "path": "simulation/nk_SimulateML2.m", + "sha256": "42ee5ffd7c67a56970d2c656c60bd4b3bd48c8d116d6faab3a83db3e095eefa5", + "language": "MATLAB", + "lines": 817, + "truncated": false, + "block": 9, + "row": 5896 + }, + { + "path": "simulation/nk_SimulateML3.m", + "sha256": "5bb6ea761f1b3f1fa58d8feb568d6aba701ece9c5d341a7f7c28277604566540", + "language": "MATLAB", + "lines": 428, + "truncated": false, + "block": 9, + "row": 5701 + }, + { + "path": "simulation/nk_SynthDistkNN.m", + "sha256": "68dcff26b9d31189cec4c88a0d740ac54e7a73e663638c46e2faa0288517f9cb", + "language": "MATLAB", + "lines": 184, + "truncated": false, + "block": 9, + "row": 5300 + }, + { + "path": "simulation/nk_SynthPCAGauss.m", + "sha256": "3ce83713602bd39a5ddbb23135bd67554d83a69179b5701f503b204f3f192bee", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 4482 + }, + { + "path": "simulation/nk_SynthPCAGaussDist.m", + "sha256": "97ddd2d468438ac7c97ed2e0e7a0e82641636d03d387e08e79d195fbbb64a89f", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 9, + "row": 3508 + }, + { + "path": "simulation/py_simulate_data.py", + "sha256": "f73ded107a4d5f591ff97da11dc798ae318c403787e2918f0fcc4a1630a79468", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 9, + "row": 8231 + }, + { + "path": "simulation/py_simulate_data2.py", + "sha256": "c9520ec8c02fbf9b24278471cbeda5d13389ce1add2c107dcd5e38624bc05fbb", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7396 + }, + { + "path": "splash.m", + "sha256": "308953e28a74830b092a62937f7c408cf9644427eb6a75b2caab62419097afa5", + "language": "MATLAB", + "lines": 269, + "truncated": false, + "block": 9, + "row": 5476 + }, + { + "path": "trainpredict/ACCURACY.m", + "sha256": "00bf7a59878a3e9946b681e01f9215fc78cb11a64191c69209b0dedec8642d8b", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3347 + }, + { + "path": "trainpredict/ADASYN.m", + "sha256": "b4caaab21ff92195858e9e957f162455a7027b4ff94225b16f2843d02ed20538", + "language": "MATLAB", + "lines": 350, + "truncated": false, + "block": 9, + "row": 5603 + }, + { + "path": "trainpredict/ALLPARAM.m", + "sha256": "912a99ffa5dfd91f7f1a95cead8fb5bcb5a84a92402207804111707b7391a2bd", + "language": "MATLAB", + "lines": 93, + "truncated": false, + "block": 9, + "row": 4644 + }, + { + "path": "trainpredict/AUC.m", + "sha256": "0f3ef675826e74a6e3cb8e12731588f8da5285391217ab44910462b0dd6e93d9", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 9, + "row": 3457 + }, + { + "path": "trainpredict/BAC.m", + "sha256": "199eda7b719a69a751daf52297ba138913c9657a9942414be48df9a67b032049", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3773 + }, + { + "path": "trainpredict/BAC2.m", + "sha256": "21c3650c7576adc076f6075f5edf3fffdc4cea4d5ae466180e2abc4282a3ec5e", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3766 + }, + { + "path": "trainpredict/BBQ/Mysvmclassify.m", + "sha256": "5ccf85009061dfbae3637f8c2553d5a1310606b1e70483b9b0c33bff393aa86a", + "language": "MATLAB", + "lines": 193, + "truncated": false, + "block": 9, + "row": 5338 + }, + { + "path": "trainpredict/BBQ/Mysvmdecision.m", + "sha256": "6e39d79cdf32a4e6b8a25615fd374758219df29cf30f29f3722a5cfebea700c3", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 9, + "row": 3273 + }, + { + "path": "trainpredict/BBQ/buildBBQ.m", + "sha256": "d916eedf5102a7354a8d2c99c7f075053fcd9bb1710d8e1b35c64e0ef80d098b", + "language": "MATLAB", + "lines": 354, + "truncated": false, + "block": 9, + "row": 5576 + }, + { + "path": "trainpredict/BBQ/elbow.m", + "sha256": "d855e3488f02297c52191d91a0de7fcd142557b8f149a3d98e84fc249aa75f27", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3134 + }, + { + "path": "trainpredict/BBQ/getAUC.m", + "sha256": "89281451787a954bf0f1ba8e7dbd27ecd7866e5831545a015c448831c01a48cb", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3192 + }, + { + "path": "trainpredict/BBQ/getECE.m", + "sha256": "3b600d1a38a61613269391407b4feb75f0276a7f454b83812947dc0e945f1fb8", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3458 + }, + { + "path": "trainpredict/BBQ/getMCE.m", + "sha256": "ca3fd91fe6b9c11b07dd49e120e2bcb1b6f48d3829ffbf19fbf9b2dea2a94db0", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3397 + }, + { + "path": "trainpredict/BBQ/getMeasures.m", + "sha256": "f0a9d27ac0b40ca5ac14da54f34e642507af21620c77293d35bd0bf418766997", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 9, + "row": 3427 + }, + { + "path": "trainpredict/BBQ/getRMSE.m", + "sha256": "96f3426e9f500966dacf28cbe0a907c65cedeb3d933956cfb8c48a64b5b509e9", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 2970 + }, + { + "path": "trainpredict/BBQ/predictBBQ.m", + "sha256": "62fea2b8110e0dc7ea93871580d1b851b4193afa2addf8957c77f4f3462d1c62", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4446 + }, + { + "path": "trainpredict/BBQ/test.m", + "sha256": "05607bc0b699d1dd3d03e4b2471cb2facda4c86b5a9ff33186bec5e758d3958f", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 3948 + }, + { + "path": "trainpredict/CC.m", + "sha256": "92e1ac3bef0567208c1820ea8332fd7c113d95e27542bcb93130f0e53128db26", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 9, + "row": 3460 + }, + { + "path": "trainpredict/ComputeEnsPerf.m", + "sha256": "fefcde2da4bbfcac70e5df6c885ea19fef5f8791aa87af1061321cbe11368762", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 9, + "row": 4076 + }, + { + "path": "trainpredict/DOR.m", + "sha256": "1a7b544c6e6d3005adbc1d991ebb4ef484de20876cb14160073dcef3413aedb3", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3358 + }, + { + "path": "trainpredict/DetrendFoldPerm.m", + "sha256": "27c243d88df7c854dfd02d8d9a8d08eef8aebf6879703ebbd79ff6db3c57e993", + "language": "MATLAB", + "lines": 95, + "truncated": false, + "block": 9, + "row": 4702 + }, + { + "path": "trainpredict/ECE.m", + "sha256": "13dd351a2aee66cfda5c16b38a11c48cf747d0dfc40238e117f8d9f7b1cbc74c", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3429 + }, + { + "path": "trainpredict/EvalCoxPH.m", + "sha256": "7fe3fa9453e08c2c11bfdcf6e0c1a8a2829acabe213c2d1e63f695b2c9e3c871", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3214 + }, + { + "path": "trainpredict/EvalSeqOpt.m", + "sha256": "cb972ee337beee6acf2b3e7a128c2fb49c3119dfddf5dffa6234092dd3dc12e2", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3446 + }, + { + "path": "trainpredict/EvalSubSpaces.m", + "sha256": "a40adebfb46451ebc0bb41e1858a0047cf7a905325c911afc9af9f4e5839f750", + "language": "MATLAB", + "lines": 140, + "truncated": false, + "block": 9, + "row": 5294 + }, + { + "path": "trainpredict/FPR.m", + "sha256": "83db7d422e2f378e6c515b5f4afb3bb3a89d90d53c0c22c1851a7c055a8983da", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3441 + }, + { + "path": "trainpredict/FSCORE.m", + "sha256": "389e9e731bf185ebc3f724b23649ba2047c0d7ad20e44bfa2f1a07a817043586", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 9, + "row": 3530 + }, + { + "path": "trainpredict/FoldPerm.m", + "sha256": "db0d55c54d390d0e3a0bfa3546b425508cdaa0ef369f6d27c8e460753d2fe28d", + "language": "MATLAB", + "lines": 441, + "truncated": false, + "block": 9, + "row": 5802 + }, + { + "path": "trainpredict/GAFeatSel/GA.m", + "sha256": "8852568492c6787f410baa012fa7bc09ad4aaa45e7764c57789ea5d83f8a9f2e", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3487 + }, + { + "path": "trainpredict/GAFeatSel/jFitnessFunction1.m", + "sha256": "d41d67be388e1b4578bb7e43aec8d4539fd8321a67b128e0541b0cec8b148161", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3170 + }, + { + "path": "trainpredict/GAFeatSel/jGA1.m", + "sha256": "1aef0f4ee8a455d2ad1a38c37768d43aea149c99fa5b1eeeab0545ab1c7882a7", + "language": "MATLAB", + "lines": 86, + "truncated": false, + "block": 9, + "row": 4101 + }, + { + "path": "trainpredict/GMEAN.m", + "sha256": "22e6bd1db2cdd0daaf3b9cddc713c26381c31ee7c30f8c75c652df2744d3a55c", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3486 + }, + { + "path": "trainpredict/GetMLType.m", + "sha256": "1a2de29615774e1f6750ce16feff25bb95ff8498aaa833f5db80a48ba3c15c7b", + "language": "MATLAB", + "lines": 108, + "truncated": false, + "block": 9, + "row": 4864 + }, + { + "path": "trainpredict/HYDRA/hydra.m", + "sha256": "7ed31bebbcf541ddbf75c4a3a0601a1d5019c599f3fabcff14f32b7a984b1e79", + "language": "MATLAB", + "lines": 635, + "truncated": false, + "block": 1, + "row": 4271 + }, + { + "path": "trainpredict/HYDRA/hydra_solver.m", + "sha256": "d8a60f04fd5ab361a5e0bc24b4f863c076caf55096c635661454b99374e46bed", + "language": "MATLAB", + "lines": 711, + "truncated": false, + "block": 9, + "row": 5833 + }, + { + "path": "trainpredict/KAPPA.m", + "sha256": "d2eed0693660ff1135f206dca9e9feb2a852b9e4430103506ffa14492e9b52de", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3668 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/alphaseeding/libsvm-alphaseed-2.81/libsvm-alphaseed-2.81/svm.cpp", + "sha256": "ba580450e846449baa283e2f37588f3742761bbccdd59ae3384ca70c173e368a", + "language": "C++", + "lines": 3071, + "truncated": false, + "block": 9, + "row": 1067 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/make.m", + "sha256": "0b184ba5a57c2b6309d7ea64cefab274ba2a85d6ab770ab45857d6811997ae5f", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3111 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/py-tools/checkdata.py", + "sha256": "58b2a197a233fd734a4befff2e9ee9efe8b9659032d13613891dad23ae55fef2", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 9, + "row": 8136 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/py-tools/dense2sparse.py", + "sha256": "a355e51d5cfd07a1e4acdb5abbe7a0db004a16dbac48129875b9d34114c1f622", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6520 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/py-tools/easy.py", + "sha256": "797c7df57b29edb2cb2dbe3d7c562a5ab642b38a66fa2a0d5ae1e07637e296d2", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8336 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/py-tools/grid.py", + "sha256": "3a2cb36520036a9cba21cb3a993ec4b68a5c10d48ae8f2da435c77328d3f38c9", + "language": "Python", + "lines": 376, + "truncated": false, + "block": 9, + "row": 11151 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/py-tools/sparse2dense.py", + "sha256": "998dfce947fc6c4fc824af457acf732fe845ea35729ec908f0fdf5538bd8927a", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 6763 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/py-tools/subset.py", + "sha256": "b41190fde4c158870f4946efc79239e0d63adfe3b3d93e64b387215f7fc23936", + "language": "Python", + "lines": 144, + "truncated": false, + "block": 9, + "row": 8549 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/read_sparse.c", + "sha256": "93c64361a1ed6f8534292eccd0b82c89a96f4265ce316d92019b30ea5d150925", + "language": "C", + "lines": 145, + "truncated": false, + "block": 9, + "row": 25 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/read_sparse289PLUS.c", + "sha256": "93c64361a1ed6f8534292eccd0b82c89a96f4265ce316d92019b30ea5d150925", + "language": "C", + "lines": 145, + "truncated": false, + "block": 9, + "row": 25 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/svm-predict.c", + "sha256": "1eebe3c25259ec6b5f81ae341bdd6be42077ba942414d8cab8eb5ec1f0f42eb8", + "language": "C", + "lines": 186, + "truncated": false, + "block": 9, + "row": 43 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/svm-predict289PLUS.c", + "sha256": "1eebe3c25259ec6b5f81ae341bdd6be42077ba942414d8cab8eb5ec1f0f42eb8", + "language": "C", + "lines": 186, + "truncated": false, + "block": 9, + "row": 43 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/svm-scale.c", + "sha256": "c0308d4d77fc282fbf3b0a86e09703b0320e1cd7e6ec93799ea1cfee76b1ffbb", + "language": "C", + "lines": 341, + "truncated": false, + "block": 9, + "row": 81 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/svm-scale289PLUS.c", + "sha256": "c0308d4d77fc282fbf3b0a86e09703b0320e1cd7e6ec93799ea1cfee76b1ffbb", + "language": "C", + "lines": 341, + "truncated": false, + "block": 9, + "row": 81 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/svm-train.c", + "sha256": "d226c1f140d02b3bb5d7f6ec438e62aa5140097b9228da2be94441763553bf39", + "language": "C", + "lines": 331, + "truncated": false, + "block": 9, + "row": 90 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/svm-train289PLUS.c", + "sha256": "d226c1f140d02b3bb5d7f6ec438e62aa5140097b9228da2be94441763553bf39", + "language": "C", + "lines": 331, + "truncated": false, + "block": 9, + "row": 90 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/svm.cpp", + "sha256": "554b9a4ba8c8708ab29b73e45eac3e7a74ce7fae760b54f7280222522551f007", + "language": "C++", + "lines": 3545, + "truncated": false, + "block": 9, + "row": 1083 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/svm.h", + "sha256": "9f8d2f0e2536c236759bb43839916c5e40b0a52132d12a6395762268da7080d7", + "language": "C/C++", + "lines": 177, + "truncated": false, + "block": 9, + "row": 1599 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/svm_model_matlab.c", + "sha256": "caaab70b1ac88088ae5972428e0e76393bc7acbc9cf4e2a982e04d0cc21d4023", + "language": "C", + "lines": 423, + "truncated": false, + "block": 9, + "row": 106 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/svm_model_matlab.h", + "sha256": "5596b8bb66b57c0a954f40c10c3cbfb902fd416ed2df1537fc1adfe711a82e85", + "language": "C/C++", + "lines": 2, + "truncated": false, + "block": 5, + "row": 5506 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/svm_model_matlab_work.c", + "sha256": "6aa2e9cbcf3d656e3801e8d75165e5b6e74040f2380ea90c88fb3bdbbff9e806", + "language": "C", + "lines": 365, + "truncated": false, + "block": 9, + "row": 93 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/svmpredict.c", + "sha256": "4b856c68c031a26df88fb62cbe8b95d366b5324fad2e51c7b927a701e353fb5e", + "language": "C", + "lines": 339, + "truncated": false, + "block": 9, + "row": 96 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/svmpredict289PLUS.c", + "sha256": "4b856c68c031a26df88fb62cbe8b95d366b5324fad2e51c7b927a701e353fb5e", + "language": "C", + "lines": 339, + "truncated": false, + "block": 9, + "row": 96 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/svmscale.c", + "sha256": "a1da21527674ef9a684e48bb8395e4952cd6f8550de4fc61c6a7fa38dbe6ec43", + "language": "C", + "lines": 353, + "truncated": false, + "block": 9, + "row": 84 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/svmscale289PLUS.c", + "sha256": "a1da21527674ef9a684e48bb8395e4952cd6f8550de4fc61c6a7fa38dbe6ec43", + "language": "C", + "lines": 353, + "truncated": false, + "block": 9, + "row": 84 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/svmtrain.c", + "sha256": "38c43e6186594b9f7ecb3457b36196f882a388ddbd509ee454285aae55497083", + "language": "C", + "lines": 633, + "truncated": false, + "block": 9, + "row": 137 + }, + { + "path": "trainpredict/LIBSVM-Plus-2.89/svmtrain289PLUS.c", + "sha256": "5ff237b85e54472e648f5409b9d3e8d2b10256ccabbbb05df69a1b1f3a843a59", + "language": "C", + "lines": 633, + "truncated": false, + "block": 9, + "row": 138 + }, + { + "path": "trainpredict/MAERR.m", + "sha256": "fbf58fa928a61c03bfcad33e7a73249a564fe14558664d766d5cb5606f9305d9", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3283 + }, + { + "path": "trainpredict/MALSAR-1.0/INSTALL.m", + "sha256": "067d4e5ccd4b44071822c1115e307bb1ab9695d269a5413336ce6f0a719232ca", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 9, + "row": 4467 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/calibration/segADMM_Zstep.c", + "sha256": "5a15d6756f6456b7db9f4854c12dc88546560d651f1fb71cf1cc366bbc0d0d88", + "language": "C", + "lines": 61, + "truncated": false, + "block": 9, + "row": 19 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/calibration/segADMM_Zstep.cpp", + "sha256": "5a15d6756f6456b7db9f4854c12dc88546560d651f1fb71cf1cc366bbc0d0d88", + "language": "C++", + "lines": 61, + "truncated": false, + "block": 9, + "row": 19 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/calibration/segL2.c", + "sha256": "5f837ae5e8a48f06b92bedd865c9c92ff96b033ab7e2a4739b9285748a60c398", + "language": "C", + "lines": 54, + "truncated": false, + "block": 9, + "row": 15 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/calibration/segL2.cpp", + "sha256": "5f837ae5e8a48f06b92bedd865c9c92ff96b033ab7e2a4739b9285748a60c398", + "language": "C++", + "lines": 54, + "truncated": false, + "block": 9, + "row": 15 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/calibration/segL2Proj.c", + "sha256": "930557c8185babf3431d9b0e6d0a15daf05fa281e1dcfe15af418a7deece2092", + "language": "C", + "lines": 65, + "truncated": false, + "block": 9, + "row": 21 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/calibration/segL2Proj.cpp", + "sha256": "930557c8185babf3431d9b0e6d0a15daf05fa281e1dcfe15af418a7deece2092", + "language": "C++", + "lines": 65, + "truncated": false, + "block": 9, + "row": 21 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/calibration/segSubg_loss.c", + "sha256": "ac14a1486103f61a61adee3aae4a9b0a03cf7046a84daecc13039849904352f2", + "language": "C", + "lines": 70, + "truncated": false, + "block": 9, + "row": 23 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/calibration/segSubg_loss.cpp", + "sha256": "ac14a1486103f61a61adee3aae4a9b0a03cf7046a84daecc13039849904352f2", + "language": "C++", + "lines": 70, + "truncated": false, + "block": 9, + "row": 23 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/eplb/eplb.c", + "sha256": "c7ca52e76b1d6321b85a5cd0fd85108d3543e5a7ebab1874447282b94bc0d55a", + "language": "C", + "lines": 58, + "truncated": false, + "block": 9, + "row": 13 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/eplb/eplb_old.c", + "sha256": "3644c84a34aff86e68c30bbb5e36986b9d503e9898642f18f9251db83c001189", + "language": "C", + "lines": 317, + "truncated": false, + "block": 9, + "row": 98 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/eplb/epph.h", + "sha256": "56154aa14951718b9b684830c491104483baeb6bd6bc2101ceae7d758502ff07", + "language": "C/C++", + "lines": 847, + "truncated": false, + "block": 9, + "row": 1784 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/flsa/flsa.c", + "sha256": "b2291c289d1e7d9ef21ff37983cef079093ec43966b3a06c25e0fccc7cf13781", + "language": "C", + "lines": 143, + "truncated": false, + "block": 9, + "row": 45 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/flsa/flsa.h", + "sha256": "11df34d8b9de4de9c0fdf4e84683872d648cadd9ae0312f9a275b82fc8fc717c", + "language": "C/C++", + "lines": 382, + "truncated": false, + "block": 9, + "row": 1687 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/flsa/sfa.h", + "sha256": "7b5266fe4b7d8c048ba9a706c4f4f14afe3e7f61d47a7998ea8bdc55bc15da84", + "language": "C/C++", + "lines": 1873, + "truncated": false, + "block": 9, + "row": 1839 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/largescale_ops/install.m", + "sha256": "5a6b1df0e9c50dd9c50be267559ede53c944efdf318c72211ca9b7090fd56fcb", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 9, + "row": 2978 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/largescale_ops/sparse_inp.c", + "sha256": "ac8f0ce82389dc23891edd0f07e848a5a9496472c83edecee2cb68e044fe6eeb", + "language": "C", + "lines": 64, + "truncated": false, + "block": 9, + "row": 22 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/largescale_ops/sparse_inp.m", + "sha256": "a43269ea135d84d03e0ebbffda501688decf26f65e44fcd254ddd8a6304813ae", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3129 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/largescale_ops/sparse_inp_native.m", + "sha256": "f2af68ad7317b20814e77c93d3390a9e76dd2b5f8a9066e2165b180aec5a6c85", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3108 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/largescale_ops/sparse_update.c", + "sha256": "417138e952fa660f0eaf90ddca3e2de14c0c5390d57afa65446a90cdf20aaf4f", + "language": "C", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/largescale_ops/sparse_update.m", + "sha256": "70acb1636a594b1b54140fbb43826bcbc012d54b03c12cc85583c27d7499ce19", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 9, + "row": 3004 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/largescale_ops/sparse_update_native.m", + "sha256": "07ea35dcdfc5c5ac08efce0bebd387007ba307997237db7b25b16ca85168d98a", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 9, + "row": 2952 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/largescale_ops/testMatrixMultiply.m", + "sha256": "04bb232995a9256f2858f2dbac8500f5771b43bce4da984c48d0e5a585932c7d", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 9, + "row": 3060 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/largescale_ops/testMatrixMultiply2.m", + "sha256": "f9a1c08ba818e75ee96f7bafa0ad55113052bd970932dead67a32f3f08eac8fa", + "language": "MATLAB", + "lines": 134, + "truncated": false, + "block": 9, + "row": 4973 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/largescale_ops/test_consist1.m", + "sha256": "daec576cd9c92e4c9619fd72536653f32f60ebf4a3520811dbae6e166c0e6eec", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 9, + "row": 3148 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/largescale_ops/test_consist2.m", + "sha256": "b2aa7128ead264fa8d49f20ddd72f4f386fc09f50ac6aa07311d067753474ad5", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 9, + "row": 3110 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/c_files/prf_lbm/prf_lbm.cpp", + "sha256": "c24a1bd85b856f8d31383bb4c4f919e407436275bde4977546ecc9273e03af97", + "language": "C++", + "lines": 129, + "truncated": false, + "block": 9, + "row": 337 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/CMTL/Least_CMTL.m", + "sha256": "efe273b98f538b40e298aca8902722dfeb02069a63c3fce29b1540e8e9fde290", + "language": "MATLAB", + "lines": 282, + "truncated": false, + "block": 9, + "row": 5407 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/CMTL/Logistic_CMTL.m", + "sha256": "b0ce1fac81f68e4bc15cbec66f95bc3ff624f76dcc40e33ba13d9ece5179d05c", + "language": "MATLAB", + "lines": 311, + "truncated": false, + "block": 9, + "row": 5445 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/CMTL/bsa_ihb.m", + "sha256": "9221d2fa3c2aeea435091931c85730efc88d47e9050be41c962ef464adbf897c", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 4242 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/Lasso/Least_Lasso.m", + "sha256": "0166fd4ef7f15702590ba82a05e8c600d2743f928880b6f99533c55bceaeb414", + "language": "MATLAB", + "lines": 213, + "truncated": false, + "block": 9, + "row": 5082 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/Lasso/Logistic_Lasso.m", + "sha256": "96e284143c59359e6d1c37858b1092b15573b0b760ff334d91137ec0cd2ee03b", + "language": "MATLAB", + "lines": 285, + "truncated": false, + "block": 9, + "row": 5362 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/SRMTL/Least_SRMTL.m", + "sha256": "30dd53eaf9de67be29d3f73697789e720fa27d783136694368e5c9b03172dba9", + "language": "MATLAB", + "lines": 248, + "truncated": false, + "block": 9, + "row": 5281 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/SRMTL/Logistic_SRMTL.m", + "sha256": "d462b364bbaa200fecc526366cf8f1e50eaad04fb991dcec9bdd910db1a4596a", + "language": "MATLAB", + "lines": 306, + "truncated": false, + "block": 9, + "row": 5420 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/cASO/Least_CASO.m", + "sha256": "290db18d98945e49334f2b206b0dbaf65bd7a96b7f9bb0e257481140d7d62a7f", + "language": "MATLAB", + "lines": 279, + "truncated": false, + "block": 9, + "row": 5397 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/cASO/Logistic_CASO.m", + "sha256": "632978466f4bd54f8da64c39ebf462ca27090d2c318986ee001b53f5d9996dea", + "language": "MATLAB", + "lines": 317, + "truncated": false, + "block": 9, + "row": 5448 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/cASO/bsa_ihb.m", + "sha256": "33aa89313abd26e989c1b805a1822f2fd49bae11cb333c5eb02727a39aabf227", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 9, + "row": 4243 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/calibration/MTFLC_ADMM.m", + "sha256": "88a846cfc5a709a5fec76154ef2a81e836aaada30a331769ac586e30c515da73", + "language": "MATLAB", + "lines": 149, + "truncated": false, + "block": 9, + "row": 4945 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/calibration/MTFLC_ADMM_WSolver.m", + "sha256": "ac9eb6e8ecab86e1da8ed9d145db882dc4b9b6f37ff673b9184a4c32b7489ff7", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 9, + "row": 4428 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/calibration/MTFLC_CVX.m", + "sha256": "8974d01fe06cfe4597ab672cf53ce1ce177403fd0c50cad74b52b34d8991c38a", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 3830 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/calibration/MTFLCd_ADMM.m", + "sha256": "9fd59581cf47971a2e379d4145d6962d3415d01f4a0b1d1eba21d5e2812350ea", + "language": "MATLAB", + "lines": 172, + "truncated": false, + "block": 9, + "row": 5083 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/calibration/MTFLCd_ADMM_WSolver.m", + "sha256": "82ec7d743d51226994bec5d68929f17481daddce3cad1b21566eb47f2d906eba", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 9, + "row": 4390 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/calibration/MTFLCd_DFISTA.m", + "sha256": "0daa78784e68dae025b1cba1f9d7881717c6ed300e58983e146a76b8640ed7ad", + "language": "MATLAB", + "lines": 174, + "truncated": false, + "block": 9, + "row": 5058 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/calibration/MTFLCd_DPG.m", + "sha256": "4eba5892c77f5e727b29ace7833fbba4cedbaf04366b2c65103a94d141865bb5", + "language": "MATLAB", + "lines": 175, + "truncated": false, + "block": 9, + "row": 5056 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/calibration/MTFLCd_DSolver.m", + "sha256": "ea544c9a10efca7e828aec129c1ad579e9ba58587d2a33b18673771608242f7c", + "language": "MATLAB", + "lines": 125, + "truncated": false, + "block": 9, + "row": 4730 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/calibration/MTFLCd_SFISTA.m", + "sha256": "a7547eb3a2fa2d4408937f527cec17b0dea95b17ea19249115cf6138217be8bb", + "language": "MATLAB", + "lines": 182, + "truncated": false, + "block": 9, + "row": 5094 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/calibration/MTFLCd_SPG.m", + "sha256": "d190b6290bbedfd43c596917660af90ab36918ec71e001f607b68269853eb932", + "language": "MATLAB", + "lines": 191, + "truncated": false, + "block": 9, + "row": 5151 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/calibration/MTFLCd_SPGWrapper.m", + "sha256": "22d2f994e95468ac5de00b2e300d2f8f7e8b08e69f7b7212b0df262c81ee06c7", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 2967 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/calibration/MTFLCd_SSolver.m", + "sha256": "050c2ee5dbb8c9e3fbfc523d11f442f6abd9b4f76e6fb5c393e1efce50e3ca9c", + "language": "MATLAB", + "lines": 110, + "truncated": false, + "block": 9, + "row": 4603 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/calibration/MTFLCd_Subg.m", + "sha256": "dfb725e7e6cf02ba943e0f14582cf026472ecb97cea67317dc74b87f9b4226ed", + "language": "MATLAB", + "lines": 112, + "truncated": false, + "block": 9, + "row": 4527 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/calibration/diagonalize.m", + "sha256": "28b58a07add10c04d24d3b5b415271210e68c555ceb388f5c6dcadff555b4b05", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 4057 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/calibration/primalObj.m", + "sha256": "6b682fcf35ec2b307671182674b1a96a0786c2aa6636fe24a02eea9bf8bde22c", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3187 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/calibration/primalObjD.m", + "sha256": "16eee50e826fd55387d1c85db8546fd471cf3c7dc54de1af514c35fece05382f", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 9, + "row": 3098 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/calibration/setOptsDefault.m", + "sha256": "1053c3456a00e58587b1268a86175bcf6b1846bb9ebb4ae46f55926797fb007f", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3015 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/calibration/standardize.m", + "sha256": "5397530addf88b507f8c8d86ab3c48538ad108deaf7d0666df246868531dbdf0", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3119 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/dirty/L11norm.m", + "sha256": "ab08753d3b6a0781c84bb798cb305b7917114b1e403c13c8d78284a2fad55218", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2935 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/dirty/L1infnorm.m", + "sha256": "4532b0f94afac8d02cbaeffa7deaf5880b4f9168f525f5cd681ad1f391293e08", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2937 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/dirty/Least_Dirty.m", + "sha256": "a6c01c0828a3721e5325e6c3c395d511186225389f11053e0d4442eadb68b538", + "language": "MATLAB", + "lines": 199, + "truncated": false, + "block": 9, + "row": 5166 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/dirty/Logistic_Dirty.m", + "sha256": "da6451dd48fed73f0fbb32384ed7fc3d1ca0d1dce579f713a734918d56fbde80", + "language": "MATLAB", + "lines": 267, + "truncated": false, + "block": 9, + "row": 5330 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/dirty/_Example.m", + "sha256": "3f2ef8b6a0f70384617cf965b9e109771e0ddae5ccf19b6990328a0f64949023", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 9, + "row": 3346 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/dirty/diagonalize.m", + "sha256": "23ba4290b2748ccf988a26da2b46c923650bfb3f524b5ae3a0364fbf29972874", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3617 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/dirty/proximalL11norm.m", + "sha256": "d07b13c504f06c5c89982fe0bd169c1f721f85675d4dd7f289a6b9567975d744", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 9, + "row": 2996 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/dirty/proximalL1infnorm.m", + "sha256": "0462e9aa363589bb7acfd71b5d4084fd86792ae67d6a906ea688401ad129da1b", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3127 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/iMSF/Construct_iMSF.m", + "sha256": "42e915e16453c3d5889a9027bfb4ad00d510a50696e00e4f62d310b1b4f785f3", + "language": "MATLAB", + "lines": 145, + "truncated": false, + "block": 9, + "row": 4884 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/iMSF/Least_iMSF.m", + "sha256": "3ec42b2b1cf280ec6c2d73cf45105ec3421766147d7590d0a668fe087e93e72c", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 9, + "row": 4389 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/iMSF/Logistic_iMSF.m", + "sha256": "4e1a5edc47ef7cd7d6f0459b47933af682701233cf5d7b59e290d0276f34a25b", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 9, + "row": 4393 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/iMSF/MultiSource_LeastR.m", + "sha256": "432328fcd5610851ed059a25aa17805fc247d43981ef20cfa8d2c9a1fb9683bc", + "language": "MATLAB", + "lines": 344, + "truncated": false, + "block": 9, + "row": 5541 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/iMSF/MultiSource_LogisticR.m", + "sha256": "aa02ff9d77f2c8fd3cb0798c91c6895dbd20b5cc544a364149489ab78692026f", + "language": "MATLAB", + "lines": 404, + "truncated": false, + "block": 9, + "row": 5650 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/iMSF/nchoose.m", + "sha256": "8063a1366e3e04cb54763ba96f8a391a32eeda3494cd4fd5f96f1cc232a1422e", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 4135 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/joint_feature_learning/Least_L21.m", + "sha256": "82f8c5bde8ae60529125fb2318a0c61e7fc21a63da0975f9ac97092661acef35", + "language": "MATLAB", + "lines": 234, + "truncated": false, + "block": 9, + "row": 5220 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/joint_feature_learning/Logistic_L21.m", + "sha256": "549dfdb59ba2610a9089221f065b93c3cb026486b0806a7c9e1dadc4eed546a5", + "language": "MATLAB", + "lines": 281, + "truncated": false, + "block": 9, + "row": 5364 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/low_rank/Least_Trace.m", + "sha256": "8ce4a73c96368c0f0bda19b03195b6263d534d082d410ec0c4856781ef5951b9", + "language": "MATLAB", + "lines": 221, + "truncated": false, + "block": 9, + "row": 5168 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/low_rank/Logistic_Trace.m", + "sha256": "ebdfcefe72fa7a811e3ae7623e36a56e8caebd36bdedd1e7ec54554e8aaf16cb", + "language": "MATLAB", + "lines": 271, + "truncated": false, + "block": 9, + "row": 5348 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/low_rank/trace_projection.m", + "sha256": "30c0da278a2228e5cc64423c1186272fa66de77ef8168e8890e077a18afc68b1", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 9, + "row": 4092 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/msmtfl/Least_msmtfl_capL1.m", + "sha256": "f8e256e936fee8daab4dedf13a5674b5f5af765ecd1e55195342de5ce63a36f5", + "language": "MATLAB", + "lines": 159, + "truncated": false, + "block": 9, + "row": 4959 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/msmtfl/diagonalize.m", + "sha256": "b0b124cc980a187d4fbf1280d0b4b7a5dafcad1b091155b07e448050bb809846", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3656 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/msmtfl/normalize.m", + "sha256": "7945f1aa140ad1275b860ed61379afbf5bd396800c3c8b7bfa9e3bde6ddf1cfd", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3388 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/msmtfl/proximalwL1norm.m", + "sha256": "4ba297f3ba35bb337cd54885279ca4dde64857c17c3cbade15f6a17d7e675321", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2957 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/msmtfl/standardize.m", + "sha256": "5397530addf88b507f8c8d86ab3c48538ad108deaf7d0666df246868531dbdf0", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3119 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/msmtfl/wL1norm.m", + "sha256": "5b36e184f9c753f4367e4759be5b0f9aca1e56e0326325dc5eaf37136b4af99b", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2948 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/msmtfl/wLassomtl.m", + "sha256": "c47bd606bfe6b26770630223b8995904f52b9777d55bdcd9c3116af2e85433f0", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 9, + "row": 4261 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/mutli-task clustering/LSSMTC.m", + "sha256": "7bbbfacaaddcf36bb87ee1c5a54ccbb0ecf008fb680db03a025dd21d661b904b", + "language": "MATLAB", + "lines": 191, + "truncated": false, + "block": 9, + "row": 5129 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/mutli-task clustering/MutualInfo.m", + "sha256": "f75e754f8d138fcfa5705897adab1533243f63fdb01d3c8e2009d629a3280fbb", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4125 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/mutli-task clustering/bestMap.m", + "sha256": "a809c74179e88663851f63046be50b00a34b1858964ff476f66ef2d6ef9b4295", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 4077 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/mutli-task clustering/hungarian.m", + "sha256": "b195a3806ab88e8594818b0374ecec66f752d24a1d49dd27d3e6ce8a51d100c7", + "language": "MATLAB", + "lines": 465, + "truncated": false, + "block": 3, + "row": 16333 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/mutli-task clustering/matrix2res.m", + "sha256": "15feb3b63c9973934469270381132074a7289fa5d0720410258bcc51519b423c", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3713 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/maxNorm.m", + "sha256": "8e45a7083bebb8a29a158ca43f4f99f0d6b5be51d98e20a32d8b7640d34ad0c5", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 9, + "row": 2990 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/maxNorm_ind.m", + "sha256": "8b155a56fa57511331abd3f6179e2bda670ba81a6c21462ad09af0ca38ae48e0", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 9, + "row": 3036 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/pacifier_iba.m", + "sha256": "d4eac7455ace55cee9e402b24687ec5922ecb46bd35df88058ec4c4d1ab247f4", + "language": "MATLAB", + "lines": 134, + "truncated": false, + "block": 9, + "row": 4763 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/pacifier_sba.m", + "sha256": "161dc940809381d74d720071c9a81371060ff49bc1ba3422e9c90fed56a57381", + "language": "MATLAB", + "lines": 187, + "truncated": false, + "block": 9, + "row": 5176 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/private/merge_struct.m", + "sha256": "e7481545223ed66ccb8f5b4c9e0a05b660fef188ae5695aaf26bcd39f40dd591", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3209 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/private/pnopt_Lbfgs_prod.m", + "sha256": "5224f7b94afac09b2e7fc683431c733881f60cecfbafff5d82d0fc5308b892e7", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3540 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/private/pnopt_backtrack.m", + "sha256": "45333a30836da5b7795a935dcbe6aa74e43e069d13f7c98e0b549e919305e3fc", + "language": "MATLAB", + "lines": 69, + "truncated": false, + "block": 9, + "row": 4126 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/private/pnopt_curvtrack.m", + "sha256": "f65e951a8ff97848742803c3246cb3a383c1c2600154d943dc8f4a87f555edbb", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 4110 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/private/pnopt_flags.m", + "sha256": "23ee949221dcdb9e18d2c5d71f1592ae1015adfd0848cef53474123d3d1a1693", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 9, + "row": 3332 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/private/pnopt_optimset.m", + "sha256": "b98117e0be065cb39ad8869c132bedfd48e820a234864b87cb2b215c93360f5c", + "language": "MATLAB", + "lines": 127, + "truncated": false, + "block": 9, + "row": 4904 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/private/pnopt_quad.m", + "sha256": "ec3f71c8792f84c617e93179a4d4d68be11ce5a0e7e956bbd609f11411ab6ab5", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 9, + "row": 3145 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/private/pnopt_sparsa.m", + "sha256": "67ebff7d9ec72a473909e6dd05240d721f9d2190ef6410efd2e385e2edb20619", + "language": "MATLAB", + "lines": 220, + "truncated": false, + "block": 9, + "row": 5266 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/private/pnopt_stop.m", + "sha256": "d3da33af6ff69ab34715bb29753ce4be0fc4ea4d608fc5392599c8816b7fc6f2", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3432 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/private/prox_l1.m", + "sha256": "9e58671a7bd6210c548a179fa4721d6ceed24d89d1f0f3d288541870872520c5", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3673 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/private/prox_nnl1.m", + "sha256": "0292d8156d335807d0ade6bf0136ddd1411fd43c42de886ef7e0f1f4c285fb9a", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3737 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/private/prox_null.m", + "sha256": "2ae472319539175862fb90c6e3ba1da4e9c77849b6368c11e3dcc0616b62db06", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3563 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/private/tfocs_err.m", + "sha256": "572cbfd9d1329dbaad3401b30c40aecebf30167fb2f35863e65979cab29d4d36", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 9, + "row": 2974 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/private/tfocs_prox.m", + "sha256": "1a21ef9af7f36fb6b672e7d7d4ef9f9bf265af7fd0ff36e228df8653369a0913", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 9, + "row": 4408 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/private/tfocs_stop.m", + "sha256": "35d98d4a9ca0446979c259eb72ca9115fbe6a52fa19974240a1ba707dc9d47f7", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 9, + "row": 3117 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/solveU.m", + "sha256": "710e88534114420d2c64e30ed9b28b0126afa1160ee8df10b836696c68761e57", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 9, + "row": 4098 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/solveU_ind.m", + "sha256": "b17149f4de51ffff9e705be7d0b1f616a26eca96db7b9d5a150540c2def29d09", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 4078 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/solveV_eig.m", + "sha256": "fc8eb7632698e19f8bbf89feae66a98258340931e261bc70f9b26cf2ee3ef3a8", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3626 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/solveV_eig_ind.m", + "sha256": "a6c4ea80da498377c7ae9f3b1776626b501ee7349a340fcd2501b03b64cdaeee", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 9, + "row": 3599 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/progression_model/TGL/Least_TGL.m", + "sha256": "c2c3395457465cd704ba6e0fea68b9e33c61eb0c93e3312ef984151e63df2f17", + "language": "MATLAB", + "lines": 247, + "truncated": false, + "block": 9, + "row": 5277 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/progression_model/TGL/Logistic_TGL.m", + "sha256": "07015d25c7d61321fc8ceaefdd8ea4f738345077e32ab0c964f2c6468b04485e", + "language": "MATLAB", + "lines": 301, + "truncated": false, + "block": 9, + "row": 5424 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/progression_model/TGL/TGL_projection_rowise.m", + "sha256": "93d078804fe8c0b6051ac3505781be1c747e8abb81b802265e6fdef4f1e638b2", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 9, + "row": 3180 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/progression_model/cFSGL/FGLasso_projection_rowise.m", + "sha256": "c7338f31e70655e8cd492b82278379e37310ed61ba01798e32dc594f84161d63", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 9, + "row": 4142 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/progression_model/cFSGL/Least_CFGLasso.m", + "sha256": "e6f0257c7e47cee4621126ccdddee5195b0e49a0a7b9391f61d065402532c5a6", + "language": "MATLAB", + "lines": 237, + "truncated": false, + "block": 9, + "row": 5239 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/progression_model/cFSGL/Logistic_CFGLasso.m", + "sha256": "0f047d809bf06b62096c5ccb1469b823a57fc42b95a69d7f91626bf3de9dcc99", + "language": "MATLAB", + "lines": 299, + "truncated": false, + "block": 9, + "row": 5426 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/progression_model/nFSGL/Least_FGLasso.m", + "sha256": "ebcde164c74b4bded592a0bc02112b479bb7a0c783417160a2361820c69a2909", + "language": "MATLAB", + "lines": 162, + "truncated": false, + "block": 9, + "row": 4820 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/progression_model/nFSGL/Least_NCFGLassoF1.m", + "sha256": "1cfc61a74d8592843024d069b59c528798aa7f757a87d44cba4d31f7c52c2ab8", + "language": "MATLAB", + "lines": 106, + "truncated": false, + "block": 9, + "row": 4447 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/progression_model/nFSGL/Least_NCFGLassoF2.m", + "sha256": "022726fdbe4507c90a3df33b55cab87853b035df07de89da6dc42b23d4e21906", + "language": "MATLAB", + "lines": 105, + "truncated": false, + "block": 9, + "row": 4458 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/progression_model/nFSGL/Least_Weight1FGLasso.m", + "sha256": "58f6866a5c876bd61d6184c5512facdd0c0606ee660d1dac309cbce3015b935d", + "language": "MATLAB", + "lines": 239, + "truncated": false, + "block": 9, + "row": 5240 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/progression_model/nFSGL/Least_Weight2FGLasso.m", + "sha256": "d123c759dad3b2ce852b7b78d9ac4e025fd07dfef8aa01d0fb7a5510f4c584e2", + "language": "MATLAB", + "lines": 242, + "truncated": false, + "block": 9, + "row": 5275 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/rMTFL/L12norm.m", + "sha256": "1fdd4c61c51f9638b7516756aba534ec6fd941d0499ba1eca59fc03d39f9c092", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 9, + "row": 2936 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/rMTFL/Least_rMTFL.m", + "sha256": "d4774e90bdcb17d2ff281f6a35da42bd88f2028341ea048fdc437d9040ef7daf", + "language": "MATLAB", + "lines": 189, + "truncated": false, + "block": 9, + "row": 5098 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/rMTFL/Logistic_rMTFL.m", + "sha256": "daa6370ca8a535c773b51ebaf2692dc5b53a2533c998caec6faeb5aba41f0a40", + "language": "MATLAB", + "lines": 241, + "truncated": false, + "block": 9, + "row": 5209 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/rMTFL/diagonalize.m", + "sha256": "23ba4290b2748ccf988a26da2b46c923650bfb3f524b5ae3a0364fbf29972874", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3617 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/rMTFL/normalize.m", + "sha256": "b90e48612df69fffdd99132e358fdec481f538ffb638d642994595b6c04590ef", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3324 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/rMTFL/proximalL12norm.m", + "sha256": "95096a9e3499484b6fd79fcf30bd7be9141e885cf120837980da3924b00e5e4c", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 9, + "row": 3013 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/rMTFL/standardize.m", + "sha256": "5397530addf88b507f8c8d86ab3c48538ad108deaf7d0666df246868531dbdf0", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3119 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/robust/Least_RMTL.m", + "sha256": "d46816f1163cd5b7a47608daca94084f96a77ed3ca33cf224562e930915b1ea3", + "language": "MATLAB", + "lines": 207, + "truncated": false, + "block": 9, + "row": 5059 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/robust/line_search_cond_RMTL.m", + "sha256": "bcf6a118e281a4b92263e71c25ef4d78f002d9545a695b6f0e63f24db1a8112e", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 9, + "row": 4355 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/robust/solve_12_norm.m", + "sha256": "14620dce4341e2cc342ac8e28f181e622c98a99f1244ea65ba8f9be5d60c7e47", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 9, + "row": 3784 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/robust/solve_trace_norm_RMTL.m", + "sha256": "d4d5f82d1a335a64d2b71343c806ffba388541fea706c6bcb6fcc859196ae769", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 9, + "row": 3968 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/sparse_low_rank/Least_SparseTrace.m", + "sha256": "efc3a0e0a1a82b66f5bce57f4d5e677770667753a208814da02a30338b8e01ae", + "language": "MATLAB", + "lines": 226, + "truncated": false, + "block": 9, + "row": 5095 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/sparse_low_rank/Solve_OneNorm.m", + "sha256": "3790361cbb3f3f72c3446310c605ae47a3a7562e0d6791d6d65dd01ddafe0806", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 9, + "row": 3901 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/functions/sparse_low_rank/line_search_cond_sparse_lowrank.m", + "sha256": "1124bc20cdec4665bcbf934254c9dacf8f2f59b3ce124e15dcff8aca343e8a91", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 9, + "row": 4207 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/utils/combine_input.m", + "sha256": "d38973e16f67fdbc6297021fc84b987365f461e82ebc596441605bdebcf9aa79", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 9, + "row": 3953 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/utils/init_opts.m", + "sha256": "5a3c954d5b725286c12672cb34f6cf8829c5cd69efb7909eb414c338653aeb26", + "language": "MATLAB", + "lines": 151, + "truncated": false, + "block": 9, + "row": 5027 + }, + { + "path": "trainpredict/MALSAR-1.0/MALSAR/utils/multi_transpose.m", + "sha256": "6dbfaed5865ec6a1494f80092c0ab52a5aed3728c070b1eade7041f12ecd1b46", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 9, + "row": 3746 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/example_CMTL.m", + "sha256": "d84769b4c7b6b0a64b048ea3d4867c4f2bcfccda1d4a9e882275cfaa5478b81a", + "language": "MATLAB", + "lines": 119, + "truncated": false, + "block": 9, + "row": 4840 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/example_Calibration.m", + "sha256": "36eef8fb1f9a1e7936af7b2faa63d4dfd461489f512af66ffded4f3e7396af17", + "language": "MATLAB", + "lines": 266, + "truncated": false, + "block": 9, + "row": 5412 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/example_Dirty.m", + "sha256": "40eed8620eff17a0a682960dcab94d3597608d396a6f44d027a4bb58b7f44b56", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 9, + "row": 4432 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/example_Dirty_Classify.m", + "sha256": "2bc627a8dbea7de16d6a5375dcd886092f3598178fc52dcdc616d9b9262907d5", + "language": "MATLAB", + "lines": 121, + "truncated": false, + "block": 9, + "row": 4521 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/example_L21.m", + "sha256": "57107c7479c4e334bfea626506a0bf79752c0d7b70c7a443ed4f427ff674fb39", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 9, + "row": 4415 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/example_LSSMTC.m", + "sha256": "bcacd05f720874c54317e992e1f4a7b1b72695d3bb37c92221ebefc3377ef9a9", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 9, + "row": 4396 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/example_Lasso.m", + "sha256": "37dddb9f6ce59f4276d1b31869c353c9c34fda6ee60dcda4a89fcd563ad14c19", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 9, + "row": 4377 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/example_Robust.m", + "sha256": "01ffa3e08e16ae075185bdbc0b85a5fe8ee3fe83d4ffcfffe93a6aa88bb88270", + "language": "MATLAB", + "lines": 89, + "truncated": false, + "block": 9, + "row": 4555 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/example_SRMTL.m", + "sha256": "83ffe148c547f15f69486873d9c2d2150d6eb667f9d2ae76599aec3fd9fffc25", + "language": "MATLAB", + "lines": 97, + "truncated": false, + "block": 9, + "row": 4660 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/example_SRMTL_spcov.m", + "sha256": "14f40c68f0551fcc1d5c2511f2988bf5f4a4f77eaf98a90aa813ccb6d2f8ec65", + "language": "MATLAB", + "lines": 103, + "truncated": false, + "block": 9, + "row": 4688 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/example_Trace.m", + "sha256": "662aed952586ab20a5099a3bdfc49b7ee452cae1ab4776ef18c4c853380a7a21", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 9, + "row": 4465 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/example_iMSF.m", + "sha256": "92a0bb398db206d24f87a3979d4b57c3c7718d2d8e4c74673251bf5179e490d4", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 9, + "row": 4324 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/example_msmtfl.m", + "sha256": "b8712e78626ca85c3553bbaf95e44746de83a725a915a9c17a3edd291302e4d1", + "language": "MATLAB", + "lines": 122, + "truncated": false, + "block": 9, + "row": 4787 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/example_mtl_classify.m", + "sha256": "e92f834e87441f2390468a133756bfaf0fb920260a431e6677dcb043a405fcdf", + "language": "MATLAB", + "lines": 69, + "truncated": false, + "block": 9, + "row": 4202 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/example_pacifier.m", + "sha256": "20f050060116afee82779313525dc4668f05ce488033ef832598b707ee89012e", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3379 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/example_rMTFL.m", + "sha256": "e2e6ff13d0a0aedaec6327530762fe12fda71921bdcc82e431f18c00c836ca00", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 9, + "row": 4176 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/example_rMTFL_Classify.m", + "sha256": "0fb16eb011f694061e74f869eefda06bab2328a9c81db92ce211a5b0ee1c9197", + "language": "MATLAB", + "lines": 120, + "truncated": false, + "block": 9, + "row": 4489 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/train_and_test/CrossValidation1Param.m", + "sha256": "5f5ce2e31edbb770bbbad119da621b7bfda941e0b89ae32939d3e4f5f4c3e97f", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 9, + "row": 4599 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/train_and_test/CrossValidationDirty.m", + "sha256": "4844b7df8de2489bf2fbaa6a6f80ea88c96e1aecc69d3b77ff01b8a16c5ad3d8", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4357 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/train_and_test/eval_MTL_accuracy.m", + "sha256": "ae1994f168eb40c88b197737f0159296a55de75f864d7af11abef799c8cbfe6c", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3223 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/train_and_test/eval_MTL_mse.m", + "sha256": "ad4f28e7348953c84f48ffb2f7d46bee8fb62428bc3015d1a144450fc1c4b834", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 9, + "row": 4311 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/train_and_test/eval_MTL_rmse.m", + "sha256": "a6974acd7930119bdd516b040bb21401195f6c20bad133f137ec567bf204f2f1", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4231 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/train_and_test/mtSplitPerc.m", + "sha256": "dd9c8cfff566a5abdbfa074ca9ee19e8deb944d552f844898b3bbd4026fd54f0", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 4239 + }, + { + "path": "trainpredict/MALSAR-1.0/examples/train_and_test/test_script.m", + "sha256": "6fe7596ff43e37baf0e3405198e2fe29323e77b841274705d7a3a7d5208375b2", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 9, + "row": 4371 + }, + { + "path": "trainpredict/MCC.m", + "sha256": "3e85e4ecd9f5c7fdb4d6acc39391abcfc088173654000167f2ea75eea0af9af7", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3556 + }, + { + "path": "trainpredict/MCE.m", + "sha256": "fb7c00d467181bf889e633458854fdd7626cbb4ffe44cc1da96ad44cbe409a18", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 9, + "row": 3303 + }, + { + "path": "trainpredict/MRVR/demo.m", + "sha256": "92187db928f030fb14fff30c70bbc9ce5dd327a14e9ac382bed37f4ad1d2fe10", + "language": "MATLAB", + "lines": 150, + "truncated": false, + "block": 9, + "row": 4975 + }, + { + "path": "trainpredict/MRVR/fmrvr.m", + "sha256": "f1985df8f164ad38e94608e32e0902baf692c6f821121f4d899f88b838a013df", + "language": "MATLAB", + "lines": 156, + "truncated": false, + "block": 9, + "row": 5154 + }, + { + "path": "trainpredict/MRVR/mc_rvm.m", + "sha256": "de507f8388834a086d12f61b7190a1cf4598b9b484b65cfcef2934112c9400e6", + "language": "MATLAB", + "lines": 464, + "truncated": false, + "block": 9, + "row": 5531 + }, + { + "path": "trainpredict/MRVR/mcrvm_example.m", + "sha256": "0a811893278a775a4e6aa00f8b103075ae3dbde5eff76e114d55adde58eacf8b", + "language": "MATLAB", + "lines": 139, + "truncated": false, + "block": 9, + "row": 4849 + }, + { + "path": "trainpredict/MRVR/monteCarloSimulations.m", + "sha256": "9ce236a204796240955e67527c1bcf5481f352c66066db7c64d70abbe0231511", + "language": "MATLAB", + "lines": 233, + "truncated": false, + "block": 9, + "row": 5395 + }, + { + "path": "trainpredict/MRVR/mvrvm.m", + "sha256": "d5fd562963414720d6516478fbfa668ff24f9487a0bc75ef3f9f80db3b468a2a", + "language": "MATLAB", + "lines": 250, + "truncated": false, + "block": 9, + "row": 5186 + }, + { + "path": "trainpredict/MRVR/mvrvm_example.m", + "sha256": "f616e00904dae93ec313b5a77cf66c21fe496c3506ddf9594decea57dcb272b7", + "language": "MATLAB", + "lines": 108, + "truncated": false, + "block": 9, + "row": 4457 + }, + { + "path": "trainpredict/MRVR/sbl_kernelFunction.m", + "sha256": "bca92ca0905d37a977bf791b538a85218d7635bf328897381e0739b15de3e764", + "language": "MATLAB", + "lines": 113, + "truncated": false, + "block": 9, + "row": 4350 + }, + { + "path": "trainpredict/MSE.m", + "sha256": "d6987bfc4b871ba461df14abed6d3228b445ce7a20c8d9f0c886616c9209b5ec", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3307 + }, + { + "path": "trainpredict/MultiDichoFoldPerm.m", + "sha256": "99a7ef47e31894bab1033177465fdf5998ee3a5c11fd665265d83b6ee6cdeae7", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 9, + "row": 4734 + }, + { + "path": "trainpredict/NETBEN.m", + "sha256": "0b714d36e843cb2a96cc1c41998bc1b6ef6d6e45d8ea246f9099c962e8118027", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 9, + "row": 3480 + }, + { + "path": "trainpredict/NNP.m", + "sha256": "89006a9f60ee8dd565ca7d6060d4b8411c0d3e9e3f58420f2f98df1ef05fa4c6", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3219 + }, + { + "path": "trainpredict/NPV.m", + "sha256": "c779534cfa730441744c26cb510b2a3a3c908d7a3d48267b28208c2acfa21c00", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 9, + "row": 3437 + }, + { + "path": "trainpredict/NRMSD.m", + "sha256": "1a26f06c309d9637b2a7d13adc82522842aee9f5aadebe10ae5de2cebf3f49ab", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3371 + }, + { + "path": "trainpredict/NRSMD.m", + "sha256": "5f740550ca028cee44b8105c65672339283bdddbd879376c379cbd7385f6a526", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 9, + "row": 3286 + }, + { + "path": "trainpredict/OptimCore.m", + "sha256": "ef575bd33800c6361344e6e8dce97bb5438061551e2b88feb890c72ef1f862c4", + "language": "MATLAB", + "lines": 152, + "truncated": false, + "block": 9, + "row": 5173 + }, + { + "path": "trainpredict/PPV.m", + "sha256": "a0a4c0ac978f83505b3e254ca9e0a48cbc94db73642e0aa31baee7dc607e41fe", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 9, + "row": 3462 + }, + { + "path": "trainpredict/PSI.m", + "sha256": "45f4dbd92eb651659199c1a466342610f221161220898f7277381377575dd9be", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3221 + }, + { + "path": "trainpredict/ProbabilisticFea.m", + "sha256": "faa8d3a69905435e8c7c5af4ac9fac40a9719491229a959e824534e6ac641002", + "language": "MATLAB", + "lines": 94, + "truncated": false, + "block": 9, + "row": 4882 + }, + { + "path": "trainpredict/RMSD.m", + "sha256": "47288a9a14bef0193682ca2a92445544d77b6c990e1e65d2b77e8732cb9cbd85", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3298 + }, + { + "path": "trainpredict/SB2_Release_200/SB1_KernelFunction.m", + "sha256": "75c5d57d7a6fa665f37c5e54d9d0b5c64da7a8acbff62269b91ed79366130969", + "language": "MATLAB", + "lines": 123, + "truncated": false, + "block": 9, + "row": 4553 + }, + { + "path": "trainpredict/SB2_Release_200/SB1_Release_110/SB1_Diagnostic.m", + "sha256": "ee57bb02c8ee46161ad5798920914c90e6f2f72201f8dd3f1018d59f239c4d3c", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3272 + }, + { + "path": "trainpredict/SB2_Release_200/SB1_Release_110/SB1_Estimate.m", + "sha256": "4e252c8f77003c9a1a86e513ccffa3718f8358a5133f4e5e309d2a7ce9cf9046", + "language": "MATLAB", + "lines": 195, + "truncated": false, + "block": 9, + "row": 5120 + }, + { + "path": "trainpredict/SB2_Release_200/SB1_Release_110/SB1_ExampleClassify.m", + "sha256": "40c511626f60a4f9ab110dd42491fba3d01cd9aff57d9f7df5b1997181b49618", + "language": "MATLAB", + "lines": 147, + "truncated": false, + "block": 9, + "row": 4870 + }, + { + "path": "trainpredict/SB2_Release_200/SB1_Release_110/SB1_ExampleRegress.m", + "sha256": "067bba8b8e753924462471fe625a16215cca6d04627a218fc8996043b5998477", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 9, + "row": 4532 + }, + { + "path": "trainpredict/SB2_Release_200/SB1_Release_110/SB1_KernelFunction.m", + "sha256": "4451b975cd98f5b86894c07e69e0288ef2f81b38f10eec1ec7b69cf4666afdd0", + "language": "MATLAB", + "lines": 104, + "truncated": false, + "block": 9, + "row": 4416 + }, + { + "path": "trainpredict/SB2_Release_200/SB1_Release_110/SB1_PosteriorMode.m", + "sha256": "9d68192d09f2465e5afcf099eaeeedb070fb9f2ea632765fc1a46e697b18d471", + "language": "MATLAB", + "lines": 151, + "truncated": false, + "block": 9, + "row": 4862 + }, + { + "path": "trainpredict/SB2_Release_200/SB1_Release_110/SB1_RVM.m", + "sha256": "009ada627b001a9c76a860c178e8a7be364c0c4ed4e373137325395cfe0ea17d", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 9, + "row": 4479 + }, + { + "path": "trainpredict/SB2_Release_200/SB1_Release_110/getEnvironment.m", + "sha256": "c48502cb8031831c2d8cfca860837b1f213905da30c56852be6c0a47a6ee1816", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 9, + "row": 3147 + }, + { + "path": "trainpredict/SB2_Release_200/SB1_Release_110/setEnvironment.m", + "sha256": "ab07518074d3ec951c6a992b56a6aa1fb5f8a7e82a4a9d5427cd447e5c9b04c5", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 9, + "row": 3558 + }, + { + "path": "trainpredict/SB2_Release_200/SB2_ControlSettings.m", + "sha256": "3b46ebfcd9a26ea270281fead7087619472ca66f09ceadc22c3756bd7d7fdd50", + "language": "MATLAB", + "lines": 138, + "truncated": false, + "block": 9, + "row": 4963 + }, + { + "path": "trainpredict/SB2_Release_200/SB2_Diagnostic.m", + "sha256": "974bc58fcfe5a8ea1109f0a47993684a32f20cc3e3ecb8b12085fbcded2b93a7", + "language": "MATLAB", + "lines": 131, + "truncated": false, + "block": 9, + "row": 4773 + }, + { + "path": "trainpredict/SB2_Release_200/SB2_FormatTime.m", + "sha256": "629ff642c4de091831d4120b582068b8713f18ed5c679afa5187c070bb83b794", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 9, + "row": 4033 + }, + { + "path": "trainpredict/SB2_Release_200/SB2_FullStatistics.m", + "sha256": "d22c98776acd68111acdc80ff26473478510ac68c0e4655a2673a48e3adfd40a", + "language": "MATLAB", + "lines": 190, + "truncated": false, + "block": 9, + "row": 5188 + }, + { + "path": "trainpredict/SB2_Release_200/SB2_Initialisation.m", + "sha256": "97bab01cde10d1e695bad6545b8097a88e7ca3ecc397133905fb5ab32f82c449", + "language": "MATLAB", + "lines": 229, + "truncated": false, + "block": 9, + "row": 5357 + }, + { + "path": "trainpredict/SB2_Release_200/SB2_Likelihoods.m", + "sha256": "0911811b397379008ca4091eebfb2e4da101695e64b324e02b1b55a558942ead", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 9, + "row": 4296 + }, + { + "path": "trainpredict/SB2_Release_200/SB2_ParameterSettings.m", + "sha256": "736d8874d58008e74bf6a404389aa69983c3b94578f7d22a71dbf8f5b0eb01f5", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 9, + "row": 4596 + }, + { + "path": "trainpredict/SB2_Release_200/SB2_PosteriorMode.m", + "sha256": "d7b7867a24d0d1c67cbcf7a8a2cfb449d719f9a94d91a8d4272dd452b18f9212", + "language": "MATLAB", + "lines": 219, + "truncated": false, + "block": 9, + "row": 5233 + }, + { + "path": "trainpredict/SB2_Release_200/SB2_PreProcessBasis.m", + "sha256": "6cc740aab4546b9f821b3e8a0ee9b22d46271c9d781b211b25838e46bc66d31d", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 9, + "row": 4157 + }, + { + "path": "trainpredict/SB2_Release_200/SB2_Sigmoid.m", + "sha256": "5a021d1e35ee3434557576505fbbe27a751c0c0079c4efae3d7d1a6c6c56f5d7", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 9, + "row": 3732 + }, + { + "path": "trainpredict/SB2_Release_200/SB2_UserOptions.m", + "sha256": "bcffb0591010ef21601ac50c3970ad008395411da478fb5905e17dac2271f5e8", + "language": "MATLAB", + "lines": 212, + "truncated": false, + "block": 9, + "row": 5179 + }, + { + "path": "trainpredict/SB2_Release_200/SparseBayes.m", + "sha256": "d8a928a560294effb9b50848129e420a1b4a0acd23dc03dc8b7f3c63eba875c1", + "language": "MATLAB", + "lines": 823, + "truncated": false, + "block": 9, + "row": 5850 + }, + { + "path": "trainpredict/SB2_Release_200/SparseBayesDemo.m", + "sha256": "2444991c3b6c7d7e43bdbb8352fdb868f6ffc00df7f399ffe4665dca294c57b4", + "language": "MATLAB", + "lines": 351, + "truncated": false, + "block": 9, + "row": 5488 + }, + { + "path": "trainpredict/SCC.m", + "sha256": "ce01a2b3980382b75cbaa4711f46a216d06423a171e3feda292c9a27122c3ae4", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3525 + }, + { + "path": "trainpredict/SENSITIVITY.m", + "sha256": "c965f4a1319cd9d104720a159d6c74b20f76fa3bc54fae35c0dc58d2ccdacd3d", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3452 + }, + { + "path": "trainpredict/SPECIFICITY.m", + "sha256": "28e105bdad4480684eb02325e12177ef363e7991310bee5a042a35a4751cc26f", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3456 + }, + { + "path": "trainpredict/SVEN/nk_SVEN.m", + "sha256": "d91f4bc7301e390ec47dc3cbb5c2f66ee0696528afb63f7bdd89e73827ad12b4", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 9, + "row": 3535 + }, + { + "path": "trainpredict/SelectFeaturesAcrossCV1.m", + "sha256": "bc12753f4817c53dd2fbb148be1352cf99e4ad87be6ca7b2b6eb0cdbf956484e", + "language": "MATLAB", + "lines": 145, + "truncated": false, + "block": 9, + "row": 5041 + }, + { + "path": "trainpredict/SubSpaceStrat.m", + "sha256": "5730177843a5083bcf2f2f7f499d0d5bf988620463d0a7ae57dae088dfbb037d", + "language": "MATLAB", + "lines": 531, + "truncated": false, + "block": 9, + "row": 5903 + }, + { + "path": "trainpredict/TPR.m", + "sha256": "dc704c87fa9fec6ea4080030bd7834548d7b61774070169e0a2e404043f8f693", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 9, + "row": 3393 + }, + { + "path": "trainpredict/TransferResults.m", + "sha256": "767848def18677a01e1da33ca6e6943982fcacbb3aaef185fe90411b8f2c272a", + "language": "MATLAB", + "lines": 147, + "truncated": false, + "block": 9, + "row": 5305 + }, + { + "path": "trainpredict/avrRank.m", + "sha256": "23ee19263aa3c535f0ac77ad86a0098c937ca74d0d677c8a9be0350cd9192447", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4131 + }, + { + "path": "trainpredict/binProbabilities.m", + "sha256": "87f8c8601767b5cbb5790e5766256fd2eb1fb1748667404892e4a3219f57ef9c", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3675 + }, + { + "path": "trainpredict/blogreg/blogreg.c", + "sha256": "bb2c5f916097490dd02659e66afadba98f56d6719c0c56029fbf55d24f5f9157", + "language": "C", + "lines": 857, + "truncated": false, + "block": 9, + "row": 140 + }, + { + "path": "trainpredict/blogreg/blogreg.m", + "sha256": "b0535affa0b275b23a94b3ce839074b63abc70b6c6d06978e73e7b273bceac1a", + "language": "MATLAB", + "lines": 122, + "truncated": false, + "block": 9, + "row": 4749 + }, + { + "path": "trainpredict/blogreg/logreg.m", + "sha256": "f7952e0b207f7f301663c7c3a294901988f5adf983d8bc412769763789bf3177", + "language": "MATLAB", + "lines": 108, + "truncated": false, + "block": 9, + "row": 4218 + }, + { + "path": "trainpredict/blogreg/sbmlr.m", + "sha256": "e240149517e59c0f4814b6910f6050dcde01e57a13d74452dfc85ad3ba1f1cbb", + "language": "MATLAB", + "lines": 288, + "truncated": false, + "block": 9, + "row": 5295 + }, + { + "path": "trainpredict/calibrateScores.m", + "sha256": "6552b11a15b9d3dd4d63b52084bbb26662aae55380efc61ed25b660162eb34f5", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 9, + "row": 3700 + }, + { + "path": "trainpredict/cellcat.m", + "sha256": "65bbd19de7ac6d4bf2b91dcd33d660cf6621780bf77d0c76f995a84ca819aee7", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3088 + }, + { + "path": "trainpredict/checkProperLossCalibration.m", + "sha256": "ba3cf74f3409af61e5d0b35499fe9948bf91bed74fd0e98666c8a7ffc7a47b61", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 9, + "row": 3519 + }, + { + "path": "trainpredict/determine_linsvm_flag.m", + "sha256": "7f227f412e03a00cc6c75172ccdc91773bbcff9fd9be1eef24064402eaf40b35", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 9, + "row": 2988 + }, + { + "path": "trainpredict/elm_linear/elmPredict.m", + "sha256": "8b541b8f6b6ef330ddeefccd1baf914f3d8c7acd3e69604132414b45779a1272", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 9, + "row": 3478 + }, + { + "path": "trainpredict/elm_linear/elmScale.m", + "sha256": "5a2f1cae5ea88ffd01a76fa9f3fea3ae9b346f63c0bba4d4362685e93f575038", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3069 + }, + { + "path": "trainpredict/elm_linear/elmTrain.m", + "sha256": "7e1b43724e5b699ab661e16588b9fcb4c9d76ceda78d65de144e97c57deb3780", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 9, + "row": 3944 + }, + { + "path": "trainpredict/elm_linear/elm_kernel.m", + "sha256": "1307a8e0bf4fd811341741bd58d8baa655130fadfc52e144c18ef828c20e4d60", + "language": "MATLAB", + "lines": 200, + "truncated": false, + "block": 9, + "row": 5384 + }, + { + "path": "trainpredict/elm_linear/mexElmPredict.cpp", + "sha256": "97636cff982641e12f922fa2b360d8f884e2515ee3a0c678de3c0710bd37cf4c", + "language": "C++", + "lines": 119, + "truncated": false, + "block": 9, + "row": 368 + }, + { + "path": "trainpredict/elm_linear/mexElmPredict.m", + "sha256": "72f129f3b0f182e0ab59be294caf0bfea8f7436f153c7a3775f7eac4eb9f9d88", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 9, + "row": 3169 + }, + { + "path": "trainpredict/elm_linear/mexElmTrain.cpp", + "sha256": "6628a816994f1a412b45fad2f4a829fa2706f0ccffdbdf8dac3d9693fc6c7b3f", + "language": "C++", + "lines": 139, + "truncated": false, + "block": 9, + "row": 417 + }, + { + "path": "trainpredict/elm_linear/mexElmTrain.m", + "sha256": "133ebcceb3b4fb9c821ebc2c1e6e2e5013b99a052ce520f77b296ae2fd0f334f", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 9, + "row": 3207 + }, + { + "path": "trainpredict/elm_linear/test_script.m", + "sha256": "0d67ffc0eb35f5e8ea32cfdc4230a0170ccd68452aa074956b4e64f2bbbf768e", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4180 + }, + { + "path": "trainpredict/fknn.m", + "sha256": "a8a3e08835b2451dca8ab3f029c66ef13bd833ec30180bedbe943339bc7106aa", + "language": "MATLAB", + "lines": 135, + "truncated": false, + "block": 9, + "row": 4991 + }, + { + "path": "trainpredict/generateDAG.m", + "sha256": "6509837b7269f5b53ebc14f90f89f5a264b45d2de6e48a8e6f1130f0765bd533", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 9, + "row": 3293 + }, + { + "path": "trainpredict/glmnet/coxnet.m", + "sha256": "a56a275b077c90673150d3038c1e081985f931908d229a29f4e02411861ddf65", + "language": "MATLAB", + "lines": 76, + "truncated": false, + "block": 3, + "row": 11326 + }, + { + "path": "trainpredict/glmnet/cvcompute.m", + "sha256": "2971cb9bb207baada4c4a40afe4409f35a538fee315d43f9ff8a1f0d1cfd43bb", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 3, + "row": 9110 + }, + { + "path": "trainpredict/glmnet/cvcoxnet.m", + "sha256": "f8b0f91a3ace684ed3af8473cb759d46560976e8a6a905dd5aa31519cc27e32c", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 3, + "row": 12573 + }, + { + "path": "trainpredict/glmnet/cvelnet.m", + "sha256": "7db0957c0e953f7c2a3147f14277463c37d3660642cd3144ad045aa860649a86", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 3, + "row": 11537 + }, + { + "path": "trainpredict/glmnet/cvfishnet.m", + "sha256": "0d365e6c7399947c6736b7b55d71d8364ad30b449a51c98abf8b70efcb335e96", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 3, + "row": 11893 + }, + { + "path": "trainpredict/glmnet/cvglmnet.m", + "sha256": "e1a50f102a06dd25ed0b879f32645e742dcf760528ac2a9de88219444f535907", + "language": "MATLAB", + "lines": 365, + "truncated": false, + "block": 3, + "row": 16491 + }, + { + "path": "trainpredict/glmnet/cvglmnetCoef.m", + "sha256": "dcc1229a35e2c23c20001a7e16e179db0f3463a1de9af54da8f7fa414fcaaf39", + "language": "MATLAB", + "lines": 91, + "truncated": false, + "block": 3, + "row": 13802 + }, + { + "path": "trainpredict/glmnet/cvglmnetPlot.m", + "sha256": "8f917e52bcf8596126ec8d517a651b6811133ce73de3db5d90c5a1ef15c0216d", + "language": "MATLAB", + "lines": 132, + "truncated": false, + "block": 3, + "row": 14280 + }, + { + "path": "trainpredict/glmnet/cvglmnetPredict.m", + "sha256": "1887b936b165140389a904ebe930258e8b81600114317aaf280ec9a70e3ec2c7", + "language": "MATLAB", + "lines": 105, + "truncated": false, + "block": 3, + "row": 14051 + }, + { + "path": "trainpredict/glmnet/cvlognet.m", + "sha256": "b911f51967aaf1cb0e7a993ce458f6f9d1bf6effdaa1bd4fcd176c002aeab239", + "language": "MATLAB", + "lines": 148, + "truncated": false, + "block": 3, + "row": 14317 + }, + { + "path": "trainpredict/glmnet/cvmrelnet.m", + "sha256": "191cc26d6745b7940a3ba43605e0d557f0df3bdd36b6633b44315e2882c5811b", + "language": "MATLAB", + "lines": 90, + "truncated": false, + "block": 3, + "row": 12261 + }, + { + "path": "trainpredict/glmnet/cvmultnet.m", + "sha256": "a0a85f0c04f7f10c8b5a6f447ede9a0a731261cfd24274f939dd03ef19f11601", + "language": "MATLAB", + "lines": 121, + "truncated": false, + "block": 3, + "row": 13321 + }, + { + "path": "trainpredict/glmnet/elnet.m", + "sha256": "f5d588005cf72b271238a1efff7fa768b9b9fadf2a060396034939aa377e40e2", + "language": "MATLAB", + "lines": 75, + "truncated": false, + "block": 3, + "row": 11539 + }, + { + "path": "trainpredict/glmnet/err.m", + "sha256": "6ff415198972e54324fd0a0ad82b568fde0a599c3a07b88dea9aefae9fcf62d2", + "language": "MATLAB", + "lines": 138, + "truncated": false, + "block": 3, + "row": 14019 + }, + { + "path": "trainpredict/glmnet/fishnet.m", + "sha256": "7c399459245e6397b1ed512840c9e07ccc37af6ebf13a47fc1d3535931c5ca22", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 3, + "row": 11338 + }, + { + "path": "trainpredict/glmnet/glmnet.m", + "sha256": "d67dad10b3dca1cfe52bc05240c68811dcad9fa6d720d121a06f83af0b445a02", + "language": "MATLAB", + "lines": 468, + "truncated": false, + "block": 3, + "row": 16673 + }, + { + "path": "trainpredict/glmnet/glmnetCoef.m", + "sha256": "1c380f5caaca72fa85cb7c1fb7428ee0683461c816ef2531e20138a7c61f56bf", + "language": "MATLAB", + "lines": 141, + "truncated": false, + "block": 3, + "row": 15059 + }, + { + "path": "trainpredict/glmnet/glmnetControl.m", + "sha256": "d6cb589d043328e3bc5198243e9c94dfca49cc62d6c9a1e5ba34267e7a015b62", + "language": "MATLAB", + "lines": 116, + "truncated": false, + "block": 3, + "row": 14675 + }, + { + "path": "trainpredict/glmnet/glmnetDev.m", + "sha256": "91df87167300efcb2b31110b9fc03098fe9329c24f352a86835445f309e64c14", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 3, + "row": 8201 + }, + { + "path": "trainpredict/glmnet/glmnetPlot.m", + "sha256": "a811297b3c0312ecd42e935580351fddad0902c4ece6c6a80697b5524a780065", + "language": "MATLAB", + "lines": 248, + "truncated": false, + "block": 3, + "row": 15689 + }, + { + "path": "trainpredict/glmnet/glmnetPredict.m", + "sha256": "b5cada0c499c9afc25eacf29d0f2d33bc63eba58cbd094c33a14c7a4b22f882c", + "language": "MATLAB", + "lines": 472, + "truncated": false, + "block": 3, + "row": 16718 + }, + { + "path": "trainpredict/glmnet/glmnetPrint.m", + "sha256": "ad3c262b99b274c5433df8e9c30480e0e803988cf3d3d3e7c68b123f763bf5f6", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 3, + "row": 12085 + }, + { + "path": "trainpredict/glmnet/glmnetSet.m", + "sha256": "3462bb4ce857723d4f90b0ff152ab31ee7dd60bebf08914f128396fcf39d10ea", + "language": "MATLAB", + "lines": 187, + "truncated": false, + "block": 3, + "row": 16160 + }, + { + "path": "trainpredict/glmnet/histcmd.m", + "sha256": "46b3acbcd53afc2c2bb20cb62d05038e2ea87b4b044fe2dcc2efed558d8988c6", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 3, + "row": 8252 + }, + { + "path": "trainpredict/glmnet/lognet.m", + "sha256": "1a8e0be6dc937c43e8279f9c4fa52197daf6837c4be33d1f25143d5a124c0e67", + "language": "MATLAB", + "lines": 170, + "truncated": false, + "block": 3, + "row": 14312 + }, + { + "path": "trainpredict/glmnet/mrelnet.m", + "sha256": "cf69717b3b461775cb74b9396bd2a60109500118ac0a51f9efa1dada34a81b4d", + "language": "MATLAB", + "lines": 113, + "truncated": false, + "block": 3, + "row": 12858 + }, + { + "path": "trainpredict/glmnet/nonzeroCoef.m", + "sha256": "6ab5181be972a87f77beab22622cc4ea0fde071d9d17cc52b3280677212eca97", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 3, + "row": 8594 + }, + { + "path": "trainpredict/glmnet/wtmean.m", + "sha256": "d98d0ebdb8a4e01e3c20e69246debc41c079695eb4054e1cb39834a8195146fa", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 3, + "row": 8361 + }, + { + "path": "trainpredict/isotonic_regression.m", + "sha256": "80492ff469dafead7581894a50cc776ef4b3c0cf4427c991e35d1405c2fdcc80", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 9, + "row": 3867 + }, + { + "path": "trainpredict/liblinear-2.44/blas/blas.h", + "sha256": "57a2637c207675bf69e99a58c2729c491535e101d3aafe2fddc697cc57a94542", + "language": "C/C++", + "lines": 25, + "truncated": false, + "block": 9, + "row": 1146 + }, + { + "path": "trainpredict/liblinear-2.44/blas/blasp.h", + "sha256": "f781f643938137736f1c2a5b026c0aa1f99f8c2e7822f2786c9fe4e9d740c493", + "language": "C/C++", + "lines": 438, + "truncated": false, + "block": 9, + "row": 1771 + }, + { + "path": "trainpredict/liblinear-2.44/blas/daxpy.c", + "sha256": "d9594a126f423e0112ff1093ccf4d3a63c01adfeca0ed029dae3b081e31a1ea1", + "language": "C", + "lines": 57, + "truncated": false, + "block": 9, + "row": 7 + }, + { + "path": "trainpredict/liblinear-2.44/blas/ddot.c", + "sha256": "1600dee968017f0106726fd0d7575ba1f1b22ac358e8c29047543fa04e69e275", + "language": "C", + "lines": 58, + "truncated": false, + "block": 9, + "row": 8 + }, + { + "path": "trainpredict/liblinear-2.44/blas/dnrm2.c", + "sha256": "07071fddc23a704d09da79e7b3ac9807ce932f55260e91a82cd6964d1863d1b9", + "language": "C", + "lines": 70, + "truncated": false, + "block": 9, + "row": 10 + }, + { + "path": "trainpredict/liblinear-2.44/blas/dscal.c", + "sha256": "09b386c6aa01c81db8b44db164f7bbb66f6326e992a65a53d8cd8a2e4735259e", + "language": "C", + "lines": 52, + "truncated": false, + "block": 9, + "row": 4 + }, + { + "path": "trainpredict/liblinear-2.44/linear.cpp", + "sha256": "cfb3e033c5759344a583d8e23d72d0252c5da0dce4df7cb5c41f7eee7ae7405a", + "language": "C++", + "lines": 3782, + "truncated": false, + "block": 9, + "row": 1091 + }, + { + "path": "trainpredict/liblinear-2.44/linear.h", + "sha256": "6c819fb866139742363ede1bd5e9ff45d4348a557f6043518c7773d1d9700531", + "language": "C/C++", + "lines": 88, + "truncated": false, + "block": 9, + "row": 1375 + }, + { + "path": "trainpredict/liblinear-2.44/matlab/libsvmread_liblin244.c", + "sha256": "6a42f100b8c2045b9052bbcb01be1dadf49164b81785b29b03e266f7be9cf8a8", + "language": "C", + "lines": 212, + "truncated": false, + "block": 9, + "row": 42 + }, + { + "path": "trainpredict/liblinear-2.44/matlab/libsvmwrite_liblin244.c", + "sha256": "c08fa41b19d6c3ea1a2e181523c3ec44ec218ff82eaab793a9e25d219da11499", + "language": "C", + "lines": 119, + "truncated": false, + "block": 9, + "row": 24 + }, + { + "path": "trainpredict/liblinear-2.44/matlab/linear_model_matlab.c", + "sha256": "8cfb1a4ac19efd45ef950579956eaff90d37e5148887f5dd774c417d8ec1f526", + "language": "C", + "lines": 190, + "truncated": false, + "block": 9, + "row": 35 + }, + { + "path": "trainpredict/liblinear-2.44/matlab/linear_model_matlab.h", + "sha256": "fe5b55ee97274b592147eb5dfb0d87a5cecbc02a8703655bad0447f06e9f7bcb", + "language": "C/C++", + "lines": 2, + "truncated": false, + "block": 3, + "row": 3331 + }, + { + "path": "trainpredict/liblinear-2.44/matlab/make.m", + "sha256": "591ba159c1f52448863d74f28cad29139e6ba396fa02b4fc2c26c3181c9d9976", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3769 + }, + { + "path": "trainpredict/liblinear-2.44/matlab/predict_liblin244.c", + "sha256": "b14555e84b4c62d6a30a8c7dc0dddd07e18f0f3dd55dd711b2d662ca3db9c6b5", + "language": "C", + "lines": 341, + "truncated": false, + "block": 9, + "row": 97 + }, + { + "path": "trainpredict/liblinear-2.44/matlab/train_liblin244.c", + "sha256": "a1b93d2f9f3cbfd91d22d096bc0c532d2cb282d6933aa323320d852baad72a2a", + "language": "C", + "lines": 523, + "truncated": false, + "block": 9, + "row": 132 + }, + { + "path": "trainpredict/liblinear-2.44/newton.cpp", + "sha256": "cd3880508fd6c36f6ffb0e6c0b2600a5fab4f10530519cf139cea926e8716d0c", + "language": "C++", + "lines": 251, + "truncated": false, + "block": 9, + "row": 549 + }, + { + "path": "trainpredict/liblinear-2.44/newton.h", + "sha256": "d5b2f3bf30131879b1e8b386fdac1a8dd7ec1ce27c877ea10651dfc9d89db91d", + "language": "C/C++", + "lines": 37, + "truncated": false, + "block": 9, + "row": 1154 + }, + { + "path": "trainpredict/liblinear-2.44/predict_liblin244.c", + "sha256": "a04b80fe9f7e26263fdb5177081164d007bc75583774a8fe7a8916f0af6c4813", + "language": "C", + "lines": 243, + "truncated": false, + "block": 9, + "row": 61 + }, + { + "path": "trainpredict/liblinear-2.44/python/liblinear/commonutil.py", + "sha256": "53776450ab0aa5ad3b65c069825ae724a4d840625d6a54a8af986d1f405a7dcb", + "language": "Python", + "lines": 178, + "truncated": false, + "block": 9, + "row": 9900 + }, + { + "path": "trainpredict/liblinear-2.44/python/liblinear/liblinear.py", + "sha256": "7cb3e2181e2dc4432c5334f92d4f944fc273e82f9e9eea688dc29f2197f1ec44", + "language": "Python", + "lines": 452, + "truncated": false, + "block": 9, + "row": 11625 + }, + { + "path": "trainpredict/liblinear-2.44/python/liblinear/liblinearutil.py", + "sha256": "c44a622d89284b0be34541f3fe4fa1b0bbd7dc8fdab6f007e165407b062de7f2", + "language": "Python", + "lines": 282, + "truncated": false, + "block": 9, + "row": 11011 + }, + { + "path": "trainpredict/liblinear-2.44/python/setup.py", + "sha256": "dd1a327e694b4c8b9260e9ab386d882eadc04139394055e19e9f1ed25f2bca9c", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 8652 + }, + { + "path": "trainpredict/liblinear-2.44/svm-scale.c", + "sha256": "60fb80c83834fb5ba9dba872062d31063654a88aa3afdf0081890c94df9c4c65", + "language": "C", + "lines": 405, + "truncated": false, + "block": 9, + "row": 99 + }, + { + "path": "trainpredict/liblinear-2.44/train_liblin244.c", + "sha256": "d886d307e39c5aa5eb3fa1bf54aef89b3438c6236924d8eb2f8f53f051e5ff15", + "language": "C", + "lines": 478, + "truncated": false, + "block": 9, + "row": 120 + }, + { + "path": "trainpredict/libsvm-mat-2.9-1/libsvmread.c", + "sha256": "b303730464f028b7acdcc3a770fef31a4883ef68c92e7061399e6656ada8e3cb", + "language": "C", + "lines": 200, + "truncated": false, + "block": 9, + "row": 37 + }, + { + "path": "trainpredict/libsvm-mat-2.9-1/libsvmread291.c", + "sha256": "b303730464f028b7acdcc3a770fef31a4883ef68c92e7061399e6656ada8e3cb", + "language": "C", + "lines": 200, + "truncated": false, + "block": 9, + "row": 37 + }, + { + "path": "trainpredict/libsvm-mat-2.9-1/libsvmwrite.c", + "sha256": "b2b626209ea21b73f928f7d136bba40d78eb9fa6972e539a172bcfa0288992a8", + "language": "C", + "lines": 104, + "truncated": false, + "block": 5, + "row": 152 + }, + { + "path": "trainpredict/libsvm-mat-2.9-1/libsvmwrite291.c", + "sha256": "b2b626209ea21b73f928f7d136bba40d78eb9fa6972e539a172bcfa0288992a8", + "language": "C", + "lines": 104, + "truncated": false, + "block": 5, + "row": 152 + }, + { + "path": "trainpredict/libsvm-mat-2.9-1/make.m", + "sha256": "2b97fada9a58ba67eaf9e5a56e7afc5e2c8025116b044aba075fda9f73fabb7e", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 9, + "row": 3133 + }, + { + "path": "trainpredict/libsvm-mat-2.9-1/svm.cpp", + "sha256": "14b78f3c27a077062c007207e530847bbb9927fbaf4fce7936f51f5827b83162", + "language": "C++", + "lines": 3073, + "truncated": false, + "block": 9, + "row": 1068 + }, + { + "path": "trainpredict/libsvm-mat-2.9-1/svm.h", + "sha256": "e4de20c4eb2864ea4adb177138b329f0ced2506e22c48d28edf55d8eacd6c3b5", + "language": "C/C++", + "lines": 97, + "truncated": false, + "block": 9, + "row": 1407 + }, + { + "path": "trainpredict/libsvm-mat-2.9-1/svm_model_matlab.c", + "sha256": "ad257a64564a27a5fa665f0b5a772e8d3cb56b06e2ba367381ee863f788349cb", + "language": "C", + "lines": 349, + "truncated": false, + "block": 9, + "row": 88 + }, + { + "path": "trainpredict/libsvm-mat-2.9-1/svm_model_matlab.h", + "sha256": "5596b8bb66b57c0a954f40c10c3cbfb902fd416ed2df1537fc1adfe711a82e85", + "language": "C/C++", + "lines": 2, + "truncated": false, + "block": 5, + "row": 5506 + }, + { + "path": "trainpredict/libsvm-mat-2.9-1/svmpredict.c", + "sha256": "220c309fa3cd2d2ad8a3e1873421682841f6e74a76315b3d841daa6e7876b4a2", + "language": "C", + "lines": 345, + "truncated": false, + "block": 9, + "row": 101 + }, + { + "path": "trainpredict/libsvm-mat-2.9-1/svmpredict291.c", + "sha256": "a7a9f12471dc622f2c15eedf286c709b4763412d6f0891f0967531747c6f57f0", + "language": "C", + "lines": 345, + "truncated": false, + "block": 9, + "row": 100 + }, + { + "path": "trainpredict/libsvm-mat-2.9-1/svmtrain.c", + "sha256": "40c7fd09342e7b6e6f4ad67ba0c4e0edacde653ac33a29f2a8a15119673d7122", + "language": "C", + "lines": 467, + "truncated": false, + "block": 9, + "row": 118 + }, + { + "path": "trainpredict/libsvm-mat-2.9-1/svmtrain291.c", + "sha256": "40c7fd09342e7b6e6f4ad67ba0c4e0edacde653ac33a29f2a8a15119673d7122", + "language": "C", + "lines": 467, + "truncated": false, + "block": 9, + "row": 118 + }, + { + "path": "trainpredict/libsvm-weights-3.12/matlab/do_binary_cross_validation.m", + "sha256": "73504abbb2e7f94d5342f4ea448d07ce4d97350007f73a84dddc36c97b13bdde", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3394 + }, + { + "path": "trainpredict/libsvm-weights-3.12/matlab/do_binary_predict.m", + "sha256": "07e6943275ebd252c99cbe2497ee3281457ecc118f475431bf4921375dffe27b", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 2985 + }, + { + "path": "trainpredict/libsvm-weights-3.12/matlab/libsvmread312.c", + "sha256": "d163066fa90659551e7a90b1cd3fffb7a9e96a13cb9546e1cd33c090b8715a12", + "language": "C", + "lines": 212, + "truncated": false, + "block": 3, + "row": 107 + }, + { + "path": "trainpredict/libsvm-weights-3.12/matlab/libsvmwrite312.c", + "sha256": "d3d9bf85be573640e987f70160ac50e493ad38a55bd7d82377e60d219a4a4b49", + "language": "C", + "lines": 106, + "truncated": false, + "block": 3, + "row": 58 + }, + { + "path": "trainpredict/libsvm-weights-3.12/matlab/make.m", + "sha256": "d2a0329c6d86bbbc978b8771caad5f5853b67823366bd703d3f2796c5d41b28d", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 9, + "row": 3515 + }, + { + "path": "trainpredict/libsvm-weights-3.12/matlab/svm_model_matlab.c", + "sha256": "6799ba7a1e752afc51685758e30a994075c6bf1d153ca720652fcb4f2d9dc4b4", + "language": "C", + "lines": 351, + "truncated": false, + "block": 9, + "row": 89 + }, + { + "path": "trainpredict/libsvm-weights-3.12/matlab/svm_model_matlab.h", + "sha256": "5596b8bb66b57c0a954f40c10c3cbfb902fd416ed2df1537fc1adfe711a82e85", + "language": "C/C++", + "lines": 2, + "truncated": false, + "block": 5, + "row": 5506 + }, + { + "path": "trainpredict/libsvm-weights-3.12/matlab/svmpredict312.c", + "sha256": "4c39392041fd52ee15ab6f5702b480cc1c5601d3db67d0efa6b821c36c6bc310", + "language": "C", + "lines": 349, + "truncated": false, + "block": 9, + "row": 105 + }, + { + "path": "trainpredict/libsvm-weights-3.12/matlab/svmtrain312.c", + "sha256": "6d30ce35076a83f02630f2c91c9f9cc2abb2dee7ca5b5f51f5261de90aa94c5f", + "language": "C", + "lines": 504, + "truncated": false, + "block": 9, + "row": 127 + }, + { + "path": "trainpredict/libsvm-weights-3.12/matlab/validation_function.m", + "sha256": "544bb98d557a9cdf5eda759197152954205084a7497d1750b301d69909276f6a", + "language": "MATLAB", + "lines": 97, + "truncated": false, + "block": 9, + "row": 4381 + }, + { + "path": "trainpredict/libsvm-weights-3.12/python/svm.py", + "sha256": "bc7489ba4e77e6f79606f0cb0e186caecb5f735644cb65414f8b336e1cd64d82", + "language": "Python", + "lines": 298, + "truncated": false, + "block": 9, + "row": 10616 + }, + { + "path": "trainpredict/libsvm-weights-3.12/python/svmutil.py", + "sha256": "51f977ec42c59438f6b94f20bc5db50985a4dc779d1bc8a99a0b92fef7a73254", + "language": "Python", + "lines": 246, + "truncated": false, + "block": 9, + "row": 10492 + }, + { + "path": "trainpredict/libsvm-weights-3.12/svm-predict.c", + "sha256": "da234149ed8edaf19a44afb94539db02ec50f54b7ee0db53f518a73ca37bea2a", + "language": "C", + "lines": 229, + "truncated": false, + "block": 9, + "row": 63 + }, + { + "path": "trainpredict/libsvm-weights-3.12/svm-scale.c", + "sha256": "361db39fd71b318f216dfa50812698d5dd6af28941f10345144298a744622ad4", + "language": "C", + "lines": 353, + "truncated": false, + "block": 9, + "row": 83 + }, + { + "path": "trainpredict/libsvm-weights-3.12/svm-train.c", + "sha256": "11fcab9f52de774c86b09df8d4b0eb552c14c553b67d9b019c7ad4c7aad2f9f8", + "language": "C", + "lines": 394, + "truncated": false, + "block": 9, + "row": 103 + }, + { + "path": "trainpredict/libsvm-weights-3.12/svm.cpp", + "sha256": "fff68f9e204e0af3cad0968a55a8118d007ce6800f6bdbf91c7f108fe339bed6", + "language": "C++", + "lines": 3216, + "truncated": false, + "block": 9, + "row": 1073 + }, + { + "path": "trainpredict/libsvm-weights-3.12/svm.h", + "sha256": "dddca687cfd6faec0467c7dba2b1fdbfe461222398af9dac2c6d955d41209b1f", + "language": "C/C++", + "lines": 102, + "truncated": false, + "block": 9, + "row": 1432 + }, + { + "path": "trainpredict/libsvm-weights-3.12/tools/checkdata.py", + "sha256": "3e7a4ef93efb3692361e2de98f2ad59fff097914ed62bb6f42ed0567e6ac7cdd", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 9, + "row": 8216 + }, + { + "path": "trainpredict/libsvm-weights-3.12/tools/easy.py", + "sha256": "77535280eef4b48545b8bc95be39fa668101993feedf8508b8aab1c869528a6c", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8342 + }, + { + "path": "trainpredict/libsvm-weights-3.12/tools/grid.py", + "sha256": "b969c883ca55ac5621733b86b573fe0784a0b096e3085e68a48b1d1090920470", + "language": "Python", + "lines": 374, + "truncated": false, + "block": 9, + "row": 11130 + }, + { + "path": "trainpredict/libsvm-weights-3.12/tools/subset.py", + "sha256": "c3b6b77f5432ffc0a9b19b0d15965c86113556f510454b790db6b049cecdb123", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 9, + "row": 8524 + }, + { + "path": "trainpredict/mRVMs/YTruncate.m", + "sha256": "84b14ddb429b490eaf89e49c31acf544ac6e12ec67cb973a3bf679243d90b428", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 9, + "row": 3591 + }, + { + "path": "trainpredict/mRVMs/build_standarized_kernel.m", + "sha256": "f1dbfd3a860325d4f76368a900670f82dcbe40e7285648b1774809a7c3556701", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 9, + "row": 3577 + }, + { + "path": "trainpredict/mRVMs/chol_inv.m", + "sha256": "d6eebe1c43b701030ba489acc034d2f030829dc244c7ffc5c2bd9daa256e1ec0", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3405 + }, + { + "path": "trainpredict/mRVMs/col_sum.m", + "sha256": "f6e4e30d09e9815394d42781d7478cf887d0f9127b23ec1a3f290c89c5ce77ff", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 9, + "row": 2949 + }, + { + "path": "trainpredict/mRVMs/cv_mRVM1.m", + "sha256": "25040ca266e3c579c80e7bbed1f88eb7f7a9a8a06a47f7d1c52e8911aaff88cd", + "language": "MATLAB", + "lines": 170, + "truncated": false, + "block": 9, + "row": 5301 + }, + { + "path": "trainpredict/mRVMs/cv_mRVM1_MKL.m", + "sha256": "cadcf6a100a45845e4d902616e1265636ec11cec21db066f11025d76a77b180d", + "language": "MATLAB", + "lines": 202, + "truncated": false, + "block": 9, + "row": 5379 + }, + { + "path": "trainpredict/mRVMs/cv_mRVM2.m", + "sha256": "245ee9c4bfa37df4ce0cef1ba0013438cf7534ce92a3d4dc9ca4f182c7795a0e", + "language": "MATLAB", + "lines": 169, + "truncated": false, + "block": 9, + "row": 5290 + }, + { + "path": "trainpredict/mRVMs/cv_mRVM2_MKL.m", + "sha256": "3b72a0f7d864f11d5e226ecdb887564d3e93445edae990b72b149e0e3160817a", + "language": "MATLAB", + "lines": 198, + "truncated": false, + "block": 9, + "row": 5367 + }, + { + "path": "trainpredict/mRVMs/kernel_func_RVM.m", + "sha256": "40c6efa683e81c742ec59d51eefe84488b318e77ae1117a6b8362ccbda2ad5ad", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 9, + "row": 3771 + }, + { + "path": "trainpredict/mRVMs/mRVM_train_output.m", + "sha256": "2f13df402c2a598d787dcef4baa7a2446a026a089a38fa044e2a8d87d88184c3", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 9, + "row": 3963 + }, + { + "path": "trainpredict/mRVMs/phi.c", + "sha256": "e3ffae1699b1d6fb620ce04c7916c99a4df1a8c9f369d08aafe205600c4859fd", + "language": "C", + "lines": 77, + "truncated": false, + "block": 9, + "row": 17 + }, + { + "path": "trainpredict/mRVMs/postA.m", + "sha256": "0fc485d6a7a3b06335c4090e8f8ad28155f5d4dbb336044170ad07cedcdcdc5b", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 9, + "row": 3534 + }, + { + "path": "trainpredict/mRVMs/postW_map.m", + "sha256": "32aaf05b365433cd4d2270f00acc5054fd5074a870e56df7b1c2a6cdf5829355", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 9, + "row": 3417 + }, + { + "path": "trainpredict/mRVMs/predict_mRVM.m", + "sha256": "45febe6ae689aab0c5cbf86b258ab6501073e89f394df987fdb64977007bc72a", + "language": "MATLAB", + "lines": 164, + "truncated": false, + "block": 9, + "row": 5354 + }, + { + "path": "trainpredict/mRVMs/predict_mRVM_MKL.m", + "sha256": "a94e5a1e93040622e70e8a1d1a5c4943286892d060dfb473fa4177ed933d325e", + "language": "MATLAB", + "lines": 179, + "truncated": false, + "block": 9, + "row": 5401 + }, + { + "path": "trainpredict/mRVMs/safenormcdf.m", + "sha256": "7c7926df4a3cbd486e33b080e8648fee7de95194457691d83e8b7f3505550944", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 9, + "row": 2930 + }, + { + "path": "trainpredict/mRVMs/safenormpdf.m", + "sha256": "6f6e07586d8d4312373e257d452b92698cad1a4c6cd19322df4d9316b8f5826d", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 9, + "row": 2941 + }, + { + "path": "trainpredict/mRVMs/solve_tril.c", + "sha256": "6767e66ff44e39d036c51b6c9d138c8ce818cd5f06380887b15ec50f553500a7", + "language": "C", + "lines": 106, + "truncated": false, + "block": 9, + "row": 26 + }, + { + "path": "trainpredict/mRVMs/solve_triu.c", + "sha256": "46978eb9a3359657c16816d51cc4dc2baf009e2c4b37cff35e64862e271d8f41", + "language": "C", + "lines": 80, + "truncated": false, + "block": 9, + "row": 20 + }, + { + "path": "trainpredict/mRVMs/standardize_data.m", + "sha256": "ae152230159d8c7e84f02aaf068c395141ff4c05f4d857fcfad4dc7acd2e78df", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 9, + "row": 3780 + }, + { + "path": "trainpredict/mRVMs/standardize_test_set.m", + "sha256": "68ef7de71df50e7456affa11267e61ce448419815c689e218ddc14cd844c8f00", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 9, + "row": 3451 + }, + { + "path": "trainpredict/mRVMs/train_mRVM1.m", + "sha256": "46240e657698a5e6400825c733a738a2c770743aa75fc3f7d4b18079bc0225b9", + "language": "MATLAB", + "lines": 509, + "truncated": false, + "block": 9, + "row": 5749 + }, + { + "path": "trainpredict/mRVMs/train_mRVM1_MKL.m", + "sha256": "9c8a520bb4c9dda55025618866638d2ff7373128f41d4620e46a175774e0027a", + "language": "MATLAB", + "lines": 566, + "truncated": false, + "block": 9, + "row": 5781 + }, + { + "path": "trainpredict/mRVMs/train_mRVM2.m", + "sha256": "30f4ab75816d583476c512a8e5763167867947dca920b35cb06a671c04ed9d5a", + "language": "MATLAB", + "lines": 243, + "truncated": false, + "block": 9, + "row": 5434 + }, + { + "path": "trainpredict/mRVMs/train_mRVM2_MKL.m", + "sha256": "57906220b65fe83db259fde15914376fdcdf05468f89dac7a29d924da8eecf0b", + "language": "MATLAB", + "lines": 321, + "truncated": false, + "block": 9, + "row": 5557 + }, + { + "path": "trainpredict/mRVMs/updateY.m", + "sha256": "71d9c2a20aceb74f5665ece8cb7a48dda2bd3d6c563cf260f818a0f6b7575eed", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 9, + "row": 3505 + }, + { + "path": "trainpredict/matLearn2016/binaryclass/ml_binaryclass_Cauchit.m", + "sha256": "63c4cd644ebae5b6e9b99ebe518d71026cffd45f229bc8d27ddbdd9011f8f3bd", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 9, + "row": 4080 + }, + { + "path": "trainpredict/matLearn2016/binaryclass/ml_binaryclass_HSVM.m", + "sha256": "411feed5d1d4a19aa8f4c16bc073d053cc02e55ca76340541cbabcada5104ac1", + "language": "MATLAB", + "lines": 145, + "truncated": false, + "block": 9, + "row": 4897 + }, + { + "path": "trainpredict/matLearn2016/binaryclass/ml_binaryclass_MLP.m", + "sha256": "6110d8d3292dac3ff9249bae3842d401087f5721a360c81e86acf5fc31b33b46", + "language": "MATLAB", + "lines": 230, + "truncated": false, + "block": 9, + "row": 5198 + }, + { + "path": "trainpredict/matLearn2016/binaryclass/ml_binaryclass_SSVM.m", + "sha256": "b9ce039fb4a3d51751b05b36d494fd8f95ee91f529c12a1a257b5184a7fde648", + "language": "MATLAB", + "lines": 117, + "truncated": false, + "block": 9, + "row": 4563 + }, + { + "path": "trainpredict/matLearn2016/binaryclass/ml_binaryclass_SVM.m", + "sha256": "bf09036293770d5b2b59d806fdc4fe463c888c9e548006a80a7195526cf64572", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 9, + "row": 4026 + }, + { + "path": "trainpredict/matLearn2016/binaryclass/ml_binaryclass_bagging.m", + "sha256": "58c918baad5df36dcfdc05c1a82e007ff96be102148ca0ecfe9e416931e05432", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 9, + "row": 4081 + }, + { + "path": "trainpredict/matLearn2016/binaryclass/ml_binaryclass_basis.m", + "sha256": "3272899fcfaaaec81287aac0e34b4e7a59afada2991b31a982eb9a4d2b6a3914", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 9, + "row": 3972 + }, + { + "path": "trainpredict/matLearn2016/binaryclass/ml_binaryclass_boosting.m", + "sha256": "b3222b7ceb24ba7a86f1f22d923ace8bbb40651571198701983963ef78fd90ad", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 9, + "row": 4320 + }, + { + "path": "trainpredict/matLearn2016/binaryclass/ml_binaryclass_brokenStump.m", + "sha256": "bb725101a9eafda75b7f160b31121cfcb69ceb59d1946fb7eeb246d0adb7cbc6", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 9, + "row": 3653 + }, + { + "path": "trainpredict/matLearn2016/binaryclass/ml_binaryclass_elastic_net.m", + "sha256": "72627dca8b4a3d999eb06a7ef680fa9c476d770371d2837e4baada1c52f6c234", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 9, + "row": 4063 + }, + { + "path": "trainpredict/matLearn2016/binaryclass/ml_binaryclass_exponential.m", + "sha256": "2c0ecaad1c562c50ede131ad9314d30f03706da25be641d9a3940716b194751c", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 3989 + }, + { + "path": "trainpredict/matLearn2016/binaryclass/ml_binaryclass_extreme.m", + "sha256": "7907e26b3fd68d81e28a43199abec2c51cd954c3a48dfb9b9b7376a837c86c67", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 9, + "row": 4069 + } + ] +} \ No newline at end of file diff --git a/manifests/ac/github.com__xinhuili__interpolation.json b/manifests/ac/github.com__xinhuili__interpolation.json new file mode 100644 index 0000000000000000000000000000000000000000..a2b7334673164c61d6e72e8d0df89ad58b79d214 --- /dev/null +++ b/manifests/ac/github.com__xinhuili__interpolation.json @@ -0,0 +1,246 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/xinhuili/interpolation", + "url": "https://github.com/XinhuiLi/interpolation.git", + "host": "github.com", + "commit": "573f1e0714e70a23861b290b550bfce5f6e905f1", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "8adaa86c3414e164b4eeb4d098169303faf33175f445c822183246931236464a", + "language": "License", + "lines": 201, + "truncated": false, + "block": 9, + "row": 2897 + }, + { + "path": "README.md", + "sha256": "aa07db53c886aea620cc3e1ece42b722cd1a8b5fe9e61befcdf31e5b79911329", + "language": "Text", + "lines": 100, + "truncated": false, + "block": 9, + "row": 14585 + }, + { + "path": "data/dataset.py", + "sha256": "c942104d5ee3f6b3f53bf2601bc78977b2478330d134f1f51fb075aebeadd1a9", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7125 + }, + { + "path": "data/utils.py", + "sha256": "2b19ab59df8d3e31f9943d475f14745515da0cbcc59b914797bd03cc7d882107", + "language": "Python", + "lines": 306, + "truncated": false, + "block": 9, + "row": 11114 + }, + { + "path": "interpolation/interp_dfnc_asd.ipynb", + "sha256": "2992df54fca68e1284c60faea2dcd8a6099d4296a49c37a102f5394b06cae274", + "language": "Jupyter", + "lines": 746, + "truncated": false, + "block": 9, + "row": 2704 + }, + { + "path": "interpolation/interp_dfnc_sz.ipynb", + "sha256": "f9d7883be76bb374acfadce9b14936ffbc2bba06622b16e762f57b0e0ea9e723", + "language": "Jupyter", + "lines": 722, + "truncated": false, + "block": 9, + "row": 2701 + }, + { + "path": "interpolation/interp_sfnc_asd.ipynb", + "sha256": "12399d66bf7f7f9f5c77f21bf54927d6c917483a792143ea9f0c759a484c7af8", + "language": "Jupyter", + "lines": 775, + "truncated": false, + "block": 9, + "row": 2700 + }, + { + "path": "interpolation/interp_sfnc_sz.ipynb", + "sha256": "4ecba29d0687122817c44b6dc8a56ceb532a5948493c55ca0252d1d3624b0bbb", + "language": "Jupyter", + "lines": 762, + "truncated": false, + "block": 9, + "row": 2696 + }, + { + "path": "models/ivae.py", + "sha256": "4487caaa88f97738008e97a5d1f967d1ed876c05eb5a1c3a8e0d9a6d07cb0ec9", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 9, + "row": 10368 + }, + { + "path": "models/ppca.py", + "sha256": "adabeeedae6d9120c95b39ec6c722689b0cdc03ec16e2bbc43eb05d2f69c0eeb", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 9, + "row": 7459 + }, + { + "path": "models/utils.py", + "sha256": "d9b02712ae0dd5f84c4c730227e5e77003ecddf0daf650c60a424e6012dd4092", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6759 + }, + { + "path": "models/vae.py", + "sha256": "ee7170e1031077937361ec3f81ed99618e672ae9c41d4b3ce8d6209ad8fe6889", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8225 + }, + { + "path": "visualization/plot_cognitive_score.ipynb", + "sha256": "07939de50ec021b572c21e6f8ed6fed6622e55c82340431009b3f922c3e9824d", + "language": "Jupyter", + "lines": 248, + "truncated": false, + "block": 9, + "row": 2527 + }, + { + "path": "visualization/plot_comparison.ipynb", + "sha256": "511658153706fb7d274bb33dabb255791f45fe5736d547ce4cc94215e99988a2", + "language": "Jupyter", + "lines": 121, + "truncated": false, + "block": 9, + "row": 2361 + }, + { + "path": "visualization/plot_confounds.ipynb", + "sha256": "5ecb6eaba6e216d7208ab05f5dd57dfaf391e81cded2981b125ef71e79474e37", + "language": "Jupyter", + "lines": 176, + "truncated": false, + "block": 9, + "row": 2414 + }, + { + "path": "visualization/plot_correlation.ipynb", + "sha256": "5a1231a16e14667cf9611ae897510290fedd70ca1132fb12efce5d491ab2957a", + "language": "Jupyter", + "lines": 64, + "truncated": false, + "block": 9, + "row": 2278 + }, + { + "path": "visualization/plot_dfnc_latent_space.ipynb", + "sha256": "fcfdd3e8e1b8a4f1b546b132d2b1ef415d929c15fe97a7c5776562a24b798412", + "language": "Jupyter", + "lines": 225, + "truncated": false, + "block": 9, + "row": 2489 + }, + { + "path": "visualization/plot_dynamic_metrics.ipynb", + "sha256": "df5f66d4eedf4b05faf5785f0ff6174fa335034a847d5e37e9f036dee7fcdab7", + "language": "Jupyter", + "lines": 138, + "truncated": false, + "block": 9, + "row": 2530 + }, + { + "path": "visualization/plot_hypopt_dfnc_vae.ipynb", + "sha256": "6ae6a64ec191febf899cc4b5ff3ddcbd2471021ed8a35c089f7c843ffc7b3a9e", + "language": "Jupyter", + "lines": 67, + "truncated": false, + "block": 9, + "row": 2309 + }, + { + "path": "visualization/plot_hypopt_sfnc_ivae.ipynb", + "sha256": "b7bd0ec964958ea0eccd5c498e3478f7125ec5ca6a27aa99498490118646c560", + "language": "Jupyter", + "lines": 82, + "truncated": false, + "block": 9, + "row": 2310 + }, + { + "path": "visualization/plot_hypopt_sfnc_vae.ipynb", + "sha256": "06f8fe77a804376eeccb925bb75115d9dd4cdf165baac27170637dd0ae7063bf", + "language": "Jupyter", + "lines": 67, + "truncated": false, + "block": 9, + "row": 2307 + }, + { + "path": "visualization/plot_kmeans.ipynb", + "sha256": "4bb88f3c718ab1f6491ac9b173f4ce204d69586fe4460f872be3bb36452be454", + "language": "Jupyter", + "lines": 34, + "truncated": false, + "block": 9, + "row": 2206 + }, + { + "path": "visualization/plot_mse.ipynb", + "sha256": "c61275d842d84e134dedb3431d2cbac32db64abea102f9e54507e96a30645d74", + "language": "Jupyter", + "lines": 78, + "truncated": false, + "block": 9, + "row": 2317 + }, + { + "path": "visualization/plot_sfnc_latent_space.ipynb", + "sha256": "60c9a3fc79abba2676c588df10c8a388facb28db403d86d75c78dccc7bec66b0", + "language": "Jupyter", + "lines": 162, + "truncated": false, + "block": 9, + "row": 2428 + }, + { + "path": "visualization/plot_std.ipynb", + "sha256": "c9a4a0a60133d4ec891f72e797ba465136c2d7b55ed5f4d1b158aea154a01e16", + "language": "Jupyter", + "lines": 108, + "truncated": false, + "block": 9, + "row": 2375 + }, + { + "path": "visualization/plot_subgroup.ipynb", + "sha256": "a4641a2658ce4c35e24f8d6b1b77ad75716d1be207fa68613ac43a364f74ab0b", + "language": "Jupyter", + "lines": 404, + "truncated": false, + "block": 9, + "row": 2606 + } + ] +} \ No newline at end of file diff --git a/manifests/b0/zenodo__18610042.json b/manifests/b0/zenodo__18610042.json new file mode 100644 index 0000000000000000000000000000000000000000..7efb1c8677dd8d2183949ddeab383da50875593b --- /dev/null +++ b/manifests/b0/zenodo__18610042.json @@ -0,0 +1,102 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18610042", + "url": "10.5281/zenodo.18610042", + "host": "zenodo.org", + "commit": "", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "Liana.ipynb", + "sha256": "2c5d16019eba238c0068f15cb97932afa3de9ccfe4f1409bc8fb50260515df69", + "language": "Jupyter", + "lines": 274, + "truncated": false, + "block": 9, + "row": 2443 + }, + { + "path": "Manuscript_figures.Rmd", + "sha256": "1ddf60086b251e603d50fb4fb7a464d2714fb644084b52b224be4e4281e9790e", + "language": "R", + "lines": 5753, + "truncated": false, + "block": 9, + "row": 13868 + }, + { + "path": "Objects_preparations.Rmd", + "sha256": "6caf48c3d3d168be976c2859334794f1908f7b50440388429c5cd379666586bb", + "language": "R", + "lines": 842, + "truncated": false, + "block": 9, + "row": 13793 + }, + { + "path": "Objects_preparations.ipynb", + "sha256": "e243d87e0e99e0c11529f3401758cd6cabeecebdd25ab3753d89087b93e2486b", + "language": "Jupyter", + "lines": 152, + "truncated": false, + "block": 9, + "row": 2287 + }, + { + "path": "README.md", + "sha256": "fc77231111b2f52dd7e72e5359b9d8842a9bf94a28916568798881c04498e8a7", + "language": "Text", + "lines": 102, + "truncated": false, + "block": 9, + "row": 14604 + }, + { + "path": "Scenic.ipynb", + "sha256": "356adf8d1c5bbd921b6b1ff896e26c484c8dda8719e56b3dcf3c2302fed1c27c", + "language": "Jupyter", + "lines": 376, + "truncated": false, + "block": 9, + "row": 2526 + }, + { + "path": "scCODA.ipynb", + "sha256": "b8c32aaa16321f605ca7e315da99bfe24dab5ce9a149e28a9a073f8448701b5d", + "language": "Jupyter", + "lines": 1399, + "truncated": false, + "block": 9, + "row": 2699 + }, + { + "path": "scDRS_MSA.ipynb", + "sha256": "dfb6c533452de7f909cf3274562711792130d34a85a33c5ed7042de6486d0888", + "language": "Jupyter", + "lines": 116, + "truncated": false, + "block": 9, + "row": 2260 + }, + { + "path": "scDRS_PD.ipynb", + "sha256": "49631e9d4a94035e94f5c844109a5248740baee64a34a9e1ffe0e2d5c0631263", + "language": "Jupyter", + "lines": 230, + "truncated": false, + "block": 9, + "row": 2374 + } + ] +} \ No newline at end of file diff --git a/manifests/b1/github.com__nehalpk__vision_transformer.json b/manifests/b1/github.com__nehalpk__vision_transformer.json new file mode 100644 index 0000000000000000000000000000000000000000..2015ac8c431f15be49bc3e5a82bed384f4a16d67 --- /dev/null +++ b/manifests/b1/github.com__nehalpk__vision_transformer.json @@ -0,0 +1,255 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/nehalpk/vision_transformer", + "url": "https://github.com/Nehalpk/Vision_transformer", + "host": "github.com", + "commit": "4c686a6729d31dcabcc83811b78adae6e6621bdc", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "559422b1658ea98a7181cd753bcefdfe3a7e36d6c8d927b336190fc38fd54893", + "language": "Text", + "lines": 152, + "truncated": false, + "block": 9, + "row": 14614 + }, + { + "path": "feature_extraction _and_feature_combination.py", + "sha256": "0fe5e3c36464f77e3297a747a64a0f4388fa5f0be53e032815b6cdc52ba90f27", + "language": "Python", + "lines": 559, + "truncated": false, + "block": 9, + "row": 11985 + }, + { + "path": "hdfnet/__init__.py", + "sha256": "27e8febb48ada44153ea2add9969a2c50a9831a74d9755fdd53c549a888b1cc2", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 9, + "row": 6093 + }, + { + "path": "hdfnet/data/augment.py", + "sha256": "8fa4f45cbd8a940e8819369b99f46a2b4c573d8fba2d9ff7572c9941ce59662a", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 8224 + }, + { + "path": "hdfnet/data/dataset.py", + "sha256": "f3c6f1b927417d28257bf7ec18305aea07f84843b8f85847fcd9b89bd73c64a7", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 8358 + }, + { + "path": "hdfnet/data/manifest.py", + "sha256": "3c752f4c17c9c53d52c1291d275d92ca68ae1a51a87292b7fe557f7732ed4bd1", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 9396 + }, + { + "path": "hdfnet/data/preprocess.py", + "sha256": "21f020ba8929223168bb8f94cc7a403ada69ce7be323903bf96cce672285dbe6", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 9, + "row": 8083 + }, + { + "path": "hdfnet/data/splits.py", + "sha256": "78a1282d7b4ce512645629312759d92bf9cc0024060cc32a9ed5163fd2f567f8", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 7370 + }, + { + "path": "hdfnet/eval/gradcam.py", + "sha256": "1ebc8c203fce7561b5f42305ecce9acc28ec5e79781c60980d8e81e113b7615d", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 8508 + }, + { + "path": "hdfnet/eval/metrics.py", + "sha256": "36d94a409f39d4291761ff24a0637b0920146de7384c600770ba0ec9681f4bfd", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 8411 + }, + { + "path": "hdfnet/models/hdfnet.py", + "sha256": "4a7ef0acc912f57d4b7235f47cd08ade8b0e6331ed0065fe7f021a5b8ee3b97a", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7807 + }, + { + "path": "hdfnet/models/layers.py", + "sha256": "5ee97968b15383558a921d6080e82cae372271ed65c121440943bef23fb2a2f4", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8529 + }, + { + "path": "hdfnet/models/resnet.py", + "sha256": "9d8b4db094a2f67d6c99aa808a02fec75c2bf0b4cf07bafa02556b5313e0b6a2", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 9, + "row": 8485 + }, + { + "path": "hdfnet/models/vgg.py", + "sha256": "23bd70007e8b4337f6414ce405ecaea5a52d08f7f00104d23761eea55c18c6a2", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7687 + }, + { + "path": "hdfnet/models/vit.py", + "sha256": "43c4d8c189f52bec16b2f4604fd0a5375e4a1761e37682deddce473305706708", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 8325 + }, + { + "path": "hdfnet/training/kfold.py", + "sha256": "cf0084102c46ca9155903e672944f0a83c5f2c2972ed1c8794f24c460683f181", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 9, + "row": 10566 + }, + { + "path": "hdfnet/training/train.py", + "sha256": "98682c3ebb93b0c519a24a59aec8095f568c0f3af93019ec254f22eecd7ce2ff", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 9, + "row": 9173 + }, + { + "path": "hdfnet/utils/config.py", + "sha256": "c44a399398b50045d645d49d3d38f33426c74cd07e3050e30ffc488e3063e5dc", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 9, + "row": 6401 + }, + { + "path": "hdfnet/utils/io.py", + "sha256": "23add2131fe56e23df555dc82182ca98f4917027114f9b090c11b9dc96e71566", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6565 + }, + { + "path": "hdfnet/utils/seed.py", + "sha256": "26ea24f20dcd9a9f9bcb1ce6ecdf9ed95000b05f46b3f80e3ee95fbb9c9be53b", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 9, + "row": 6468 + }, + { + "path": "scripts/build_manifest.py", + "sha256": "086eb7b7e0004ccf90276285fd0222ef312fba51bc56d2f4ebe90b054c263197", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6676 + }, + { + "path": "scripts/evaluate.py", + "sha256": "9b1fec95d93246ed72dd5d7a536d902f11cf2da0dc29eeca6d9960e0a4cecfcb", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 9, + "row": 6776 + }, + { + "path": "scripts/gradcam.py", + "sha256": "add2d12dd6b4784c25dc967ef975bf3a09bb1e92ed50747245689ade21593b8f", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 9, + "row": 6883 + }, + { + "path": "scripts/lesion_coverage_demo.py", + "sha256": "be04959945954a38e94139e2df22c8868458c7bd5b023ed3819ab95b0c342dc9", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 7400 + }, + { + "path": "scripts/train.py", + "sha256": "3daaa3f5d9b20bef84e89fe770d2a316fcb093206708bc96b71e317fd7ffdeb0", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 9, + "row": 6627 + }, + { + "path": "scripts/train_kfold.py", + "sha256": "9f0a2b45decc9170a697e086a7115d5b4de7f5c2ccae6126434150a2df5fd15f", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6816 + } + ] +} \ No newline at end of file diff --git a/manifests/b2/github.com__jacobgil__msi-atlas.json b/manifests/b2/github.com__jacobgil__msi-atlas.json new file mode 100644 index 0000000000000000000000000000000000000000..db2b108a179608fc18bbc1823a95dd0e4b3ec899 --- /dev/null +++ b/manifests/b2/github.com__jacobgil__msi-atlas.json @@ -0,0 +1,75 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/jacobgil/msi-atlas", + "url": "https://github.com/jacobgil/msi-atlas", + "host": "github.com", + "commit": "de9d453840f91e8383052ada42322e99547bd95e", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "1b8a906a4630421b9d0331474181bf510539476a127928d6d09de29cab161ae9", + "language": "License", + "lines": 21, + "truncated": false, + "block": 3, + "row": 8030 + }, + { + "path": "README.md", + "sha256": "9bc55cb727f2fb8bb3f94269ea5648acbfaa1939c54e5013343c339fb96c910f", + "language": "Text", + "lines": 53, + "truncated": false, + "block": 9, + "row": 14520 + }, + { + "path": "msi_atlas/annotations.py", + "sha256": "ad94f07ca78a2aeac2d7945a2ed6d9db3decc4137a018e43b88dd86209143f52", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 9, + "row": 9797 + }, + { + "path": "msi_atlas/atlas.py", + "sha256": "5c12cc31cfce7b3f531becdb650ec9cf8351875d455a9ac2725b08a41a3c486a", + "language": "Python", + "lines": 308, + "truncated": false, + "block": 9, + "row": 11272 + }, + { + "path": "msi_atlas/atlas_linear_model.py", + "sha256": "a29f5d44927589f019d7b0bc5a1c7f28f8ee452d68f24a61c14ad1eb17a629b2", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 9703 + }, + { + "path": "msi_atlas/mapping.py", + "sha256": "d7bf1801eedc804ea7b515d0915b7381b30307a60ce691d36a93818af7cc0036", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8393 + }, + { + "path": "notebooks/linear.ipynb", + "sha256": "135bc7cc4f6887b09df0d8dd1ba9a2b73fc05e7a193edc9b616bad9f73c4682c", + "language": "Jupyter", + "lines": 494, + "truncated": false, + "block": 9, + "row": 2605 + } + ] +} \ No newline at end of file diff --git a/manifests/b3/github.com__ef-lab__ethopy_hardware.json b/manifests/b3/github.com__ef-lab__ethopy_hardware.json new file mode 100644 index 0000000000000000000000000000000000000000..c2f8e8d898aaeb00ab11af77d9916600f915b27a --- /dev/null +++ b/manifests/b3/github.com__ef-lab__ethopy_hardware.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ef-lab/ethopy_hardware", + "url": "https://github.com/ef-lab/ethopy_hardware", + "host": "github.com", + "commit": "fd1c74230a7615d9238df146f265667c360ba2d2", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "580963b4d05914efd1f69b997b62882c7e558b2c8fc3b8711fc8e0744c2cd1fa", + "language": "License", + "lines": 21, + "truncated": false, + "block": 9, + "row": 2821 + }, + { + "path": "README.md", + "sha256": "f1e2d96fb09044f6fe5cbf07cad24ff7294b061eafbfb3eb3577526859e036b1", + "language": "Text", + "lines": 46, + "truncated": false, + "block": 9, + "row": 14501 + } + ] +} \ No newline at end of file diff --git a/manifests/b3/github.com__epfl-lcsb__rekindle.json b/manifests/b3/github.com__epfl-lcsb__rekindle.json new file mode 100644 index 0000000000000000000000000000000000000000..f2584771537c0d78b37471da02d69acf197797e8 --- /dev/null +++ b/manifests/b3/github.com__epfl-lcsb__rekindle.json @@ -0,0 +1,5781 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/epfl-lcsb/rekindle", + "url": "https://github.com/EPFL-LCSB/rekindle", + "host": "github.com", + "commit": "8cbb82c4bc53d87c347dd8fe8256479ed83ea3cd", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4", + "language": "License", + "lines": 201, + "truncated": false, + "block": 1, + "row": 2216 + }, + { + "path": "README.md", + "sha256": "fb692e660485f0f0b7ec4e1d6c1e88c9c61b0d0aebaeddb60c7df7b5994eff28", + "language": "Text", + "lines": 122, + "truncated": false, + "block": 9, + "row": 14634 + }, + { + "path": "analysis/__init__.py", + "sha256": "b89efc42927c13e7ef7894b63626721953a4dbce9e8dc45a101f2b26c2430f3a", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 6949 + }, + { + "path": "analysis/gsa/__init__.py", + "sha256": "654a36195aa1b3e96de835f1b197d20c16c41de91b96b1777d044be687eed422", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 6948 + }, + { + "path": "analysis/mca/__init__.py", + "sha256": "fcc4c925921f9c25e010e949ed3e6ca04b344700cfb1dd7c4d5a550c6eec3d2c", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 7051 + }, + { + "path": "analysis/mca/concentration_control_fun.py", + "sha256": "76cab86a3fd801a76161bba14d5845e233702600986c33990642ec129535c190", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 9, + "row": 10057 + }, + { + "path": "analysis/mca/elasticity_fun.py", + "sha256": "15f74ac9b7d91e7fbfecc657c3f09fa99037e709a2fa16ddf26bae2c39a2ba9d", + "language": "Python", + "lines": 154, + "truncated": false, + "block": 9, + "row": 9727 + }, + { + "path": "analysis/mca/flux_control_fun.py", + "sha256": "1ec064b0bfe5eff73697c2902e461fd47e8de2b85b3b5ae966118d58f0c0f437", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 9, + "row": 9633 + }, + { + "path": "analysis/mca/jacobian_fun.py", + "sha256": "c4d62e6b119ad18ab3cc167df46a6addfdf2285aa08c96349f6acdb047b988b8", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 9, + "row": 9366 + }, + { + "path": "analysis/mca/make.py", + "sha256": "9fb3b3cde272f7cd13b5c73ba4b34eb7319122fb30b24d69d3775467168f0863", + "language": "Python", + "lines": 233, + "truncated": false, + "block": 9, + "row": 10812 + }, + { + "path": "analysis/mca/prepare.py", + "sha256": "7bebb9c86dff0c7f1f07cbdd266d8a16a402a9efab0260842f64630e7f8d889f", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 9, + "row": 7434 + }, + { + "path": "analysis/mca/utils.py", + "sha256": "a85dec493baa55f217dae416db1ef9feafb420688e932f02c25fb08479d9ee94", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 9, + "row": 10474 + }, + { + "path": "analysis/mca/volume_ratio_function.py", + "sha256": "4fb8bfcf4a7a24bfd1dc46a1a754e2748be700e3ec03a6d88f4315a7e082d831", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 9, + "row": 7959 + }, + { + "path": "analysis/modal/__init__.py", + "sha256": "9241f427ed7c3ded23ac8d0c95078ce4a914570d58211c6a6ea5e96360c36974", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 6983 + }, + { + "path": "analysis/modal/modal_matrix.py", + "sha256": "ab5a944c810e8be26126933415aada472d644e1f72b8c669b690ae448caa8096", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 9, + "row": 8651 + }, + { + "path": "analysis/ode/__init__.py", + "sha256": "7730be4a59faf4bfde6877eb2ac793ebcccfec141a2a7d465f5a7dce7b82a2d0", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7054 + }, + { + "path": "analysis/ode/flux_fun.py", + "sha256": "69bb0d7d60851c40d904288907c347e2eb47bbecb0ebbca55fe80ac9fc49a2d2", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 9, + "row": 8156 + }, + { + "path": "analysis/ode/gamma_fun.py", + "sha256": "60055d69377f76fdc9785d21a9fd6bedc6c20a8cb2f94280cadf829eab57fb68", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7120 + }, + { + "path": "analysis/ode/ode_fun.py", + "sha256": "c11e4a15f145b8896470bdff3b946a96d4ee4f4a3ec183940f33dae0058767c8", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 9, + "row": 8642 + }, + { + "path": "analysis/ode/sample_concentrations.py", + "sha256": "5d93e36f0db0a8767c27e455fa24c3eb09f3e9e29e7e8ddb034ef84b2cbbf3b2", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 9, + "row": 8521 + }, + { + "path": "analysis/ode/symbolic_jacobian_fun.py", + "sha256": "d342433447ae2eccbd4b42fbda2e417873b6984ae200a34acd2efac54be217b3", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 9, + "row": 9268 + }, + { + "path": "analysis/ode/utils.py", + "sha256": "eceb3cdc969549c8d1cd1da9eeb3bd59ae796800af063194bbf151aa4e16d2cf", + "language": "Python", + "lines": 298, + "truncated": false, + "block": 9, + "row": 10957 + }, + { + "path": "analysis/oracle/__init__.py", + "sha256": "ec5b0089b018156439716497d35967b8e32477d8f871f2c54677ecc9b81a68f7", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7102 + }, + { + "path": "analysis/oracle/add_min_displacement.py", + "sha256": "7694d5c2ad86bc8e2ccff57bb23ffad302af756147009562272ff160a07cae54", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 9, + "row": 7725 + }, + { + "path": "analysis/oracle/dummy_free_energies.py", + "sha256": "c9d512ee79c8f05d1952cfb8ad0af97288e1bc173e8530fce88c383e6c24b593", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 9, + "row": 10096 + }, + { + "path": "analysis/oracle/fix_directionality.py", + "sha256": "62f85fcd2b4c4a11caf6d549ba2fadf2fef6a9f7bbb1cc47a0e6cd511efe2995", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 9, + "row": 7611 + }, + { + "path": "analysis/oracle/flux_concentration_ratios.py", + "sha256": "f16f70d6decba09c798087f03445d3eb5d61ff6704c26e7ad9f16ce6750989f2", + "language": "Python", + "lines": 243, + "truncated": false, + "block": 9, + "row": 10575 + }, + { + "path": "analysis/oracle/load_pytfa_solution.py", + "sha256": "55f52cbfbde63ceb23524bda11bf022b5d38bba27941014860677618fc12adfe", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 9, + "row": 9436 + }, + { + "path": "analysis/oracle/minimum_fluxes.py", + "sha256": "015b2aafdd799a078602ae89545aba4a52b36c34053e3ae3341c77bfc2696d76", + "language": "Python", + "lines": 317, + "truncated": false, + "block": 9, + "row": 10992 + }, + { + "path": "core/__init__.py", + "sha256": "5a27edf739bb2eec47c179241675712036c7c9fe5d8a100a56ef9d99fad44ef0", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7078 + }, + { + "path": "core/compartments.py", + "sha256": "11e8fc2691fa40abcc2664be973f06e0360240a8fb2fbbbb5e787e6045f992f5", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7457 + }, + { + "path": "core/itemsets.py", + "sha256": "7602cf013a94057af9bb4c3893add9d5654df1a6819ef957f9d01487a7d5c134", + "language": "Python", + "lines": 194, + "truncated": false, + "block": 9, + "row": 9889 + }, + { + "path": "core/kinmodel.py", + "sha256": "58501b453eb01cb8ae4aafa66a2bf35da4cc9d80e8f989951949489f95ac6ec1", + "language": "Python", + "lines": 416, + "truncated": false, + "block": 9, + "row": 11458 + }, + { + "path": "core/modifiers.py", + "sha256": "e3ff5044d94d66962c6858d5cb0e82b399a1e5a44194b1d8f9c341c1202336f6", + "language": "Python", + "lines": 399, + "truncated": false, + "block": 9, + "row": 11191 + }, + { + "path": "core/parameters.py", + "sha256": "11adfc14279c00715353ac3f01528107196ed668c05070952665316a8ef177b9", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 9, + "row": 10072 + }, + { + "path": "core/reactions.py", + "sha256": "aaade62c2b1602c452bb7d8fbfc2c9b77e453cefdb8468b2830e8ec87afe689e", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 9, + "row": 9398 + }, + { + "path": "core/reactor.py", + "sha256": "fe206e9dae24ee46f84385b5d3e07caeadb922e97fcb672ec780ce30d26c84cc", + "language": "Python", + "lines": 360, + "truncated": false, + "block": 9, + "row": 11298 + }, + { + "path": "core/solution.py", + "sha256": "7c47e5e14af5d572addd43eb9d175f96fecb09ecc7153b860ae80918a9e40e98", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 9, + "row": 8430 + }, + { + "path": "cython/nullspace.c", + "sha256": "a92c10ff57b8c6b1a73d8793c1cb505c6087c9ebfe025e34aa672ded39687698", + "language": "C", + "lines": 4953, + "truncated": true, + "block": 9, + "row": 155 + }, + { + "path": "cython/nullspace.h", + "sha256": "e9e791c94ebbcba2756105bb356a13ffde81d613fc6087f1fb62625c9b4148d9", + "language": "C/C++", + "lines": 4, + "truncated": false, + "block": 9, + "row": 1109 + }, + { + "path": "io/__init__.py", + "sha256": "654a36195aa1b3e96de835f1b197d20c16c41de91b96b1777d044be687eed422", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 6948 + }, + { + "path": "io/generate_from_cobra.py", + "sha256": "8afc95ff2cc47eaa0bcaa97fe2aa1309d0c9149c23e11d3374d2c7c251de1f91", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 9, + "row": 10058 + }, + { + "path": "io/generate_from_pytfa.py", + "sha256": "93ea4a5d0a9f1a70995672fd206c55333b6018024980a4bf7f2d4b2cc3d4a5c8", + "language": "Python", + "lines": 161, + "truncated": false, + "block": 9, + "row": 9897 + }, + { + "path": "io/model_generator.py", + "sha256": "df0fc81672f753ab521f09de42c86b470a123db7f5aae4c9a7473c168142f95a", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 9, + "row": 8539 + }, + { + "path": "io/utils.py", + "sha256": "e6d4d83d988974f5ac09b4e000cc6327a62b6bcd87b982c345b2c77e20e8de61", + "language": "Python", + "lines": 216, + "truncated": false, + "block": 9, + "row": 10226 + }, + { + "path": "io/yaml.py", + "sha256": "b48f3e474688799f93bdcdc145d62af228c8675ff08299018f54a74c49a0f9ee", + "language": "Python", + "lines": 331, + "truncated": false, + "block": 9, + "row": 11178 + }, + { + "path": "mechanisms/__init__.py", + "sha256": "8537b23e0ffdf11605b79e26b12463b5a0cb3b01ec7ac1c80b9c9dadcf051cd3", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7465 + }, + { + "path": "mechanisms/bi_uni_reversible_hill.py", + "sha256": "25dfbf3db47dbcd0a7add1dcb9519f9d4790b14d3c2676818b6a1e6ada17cbcd", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 9, + "row": 9982 + }, + { + "path": "mechanisms/convenience.py", + "sha256": "25df30268c34a8684466767a2e962e811a80766c8fefa490706ec1c06082a8b2", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 9, + "row": 10588 + }, + { + "path": "mechanisms/convenience_with_inihibition.py", + "sha256": "2a66379c11f38c0421f5b3be378afe24e2aecafede93b5152e8593542316b933", + "language": "Python", + "lines": 261, + "truncated": false, + "block": 9, + "row": 10913 + }, + { + "path": "mechanisms/gene_expression.py", + "sha256": "dec5b25127e14325bdf76f11568a408c18c9a4c8ecb48c572eea1423544187a6", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 9, + "row": 10229 + }, + { + "path": "mechanisms/generalized_elementary_kinetics.py", + "sha256": "f3a5776b7a13963aa031092494c07fb255456c1c3f34c09da6044e9fd5acc589", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 9, + "row": 10546 + }, + { + "path": "mechanisms/generalized_reversible_hill_n_n.py", + "sha256": "9aba4ea62abb2dd0b244e12973c86b3e88c51aff71dce1f93a528fa681e46b14", + "language": "Python", + "lines": 237, + "truncated": false, + "block": 9, + "row": 10706 + }, + { + "path": "mechanisms/generalized_reversible_hill_n_n_h1.py", + "sha256": "854b41a53a0a5de77cbdac45fa5b9e6fcd377d26c2555ae89cf52370938e77cd", + "language": "Python", + "lines": 237, + "truncated": false, + "block": 9, + "row": 10740 + }, + { + "path": "mechanisms/irrev_hill.py", + "sha256": "b54ddf995fba0c7fb92aba89214bb4723af1417a2030bb2a9004835c615e8644", + "language": "Python", + "lines": 161, + "truncated": false, + "block": 9, + "row": 9615 + }, + { + "path": "mechanisms/irrev_m_n_michaelis_menten.py", + "sha256": "259acf59506e32aa2b33f6f9fd7aa263f7e1c1327b5d8c546796609f8c446049", + "language": "Python", + "lines": 182, + "truncated": false, + "block": 9, + "row": 10081 + }, + { + "path": "mechanisms/irrev_massaction.py", + "sha256": "45b9aa2f7958a8b05a60731602d3ade17c646bccb418d666fcab395e6e59ae82", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 9, + "row": 9753 + }, + { + "path": "mechanisms/mechanism.py", + "sha256": "eb9e59bf0f33e65d9b77f5406d2fb195f88bf66f2db69c0075af8924b2407ebc", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 9, + "row": 9224 + }, + { + "path": "mechanisms/michaelis_menten.py", + "sha256": "3537b13b182bfdbc501f66d48628936cf3674f7d0d1c141886850a120dbcfb6a", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 9, + "row": 10531 + }, + { + "path": "mechanisms/rand_bi_bi_michaelis_menten.py", + "sha256": "917f21816c24360132614c26bffa12669d22b97ef2f0f21923ec105f518af737", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 9708 + }, + { + "path": "mechanisms/rev_massaction.py", + "sha256": "5a8a824feec98b721d2e81613fe054bc6ea34530f387aa85791ef14ed5564f81", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 9, + "row": 9817 + }, + { + "path": "mechanisms/uni_bi_reversible_hill.py", + "sha256": "2f43fe5d3309e7116ae290c04e22007af7ce05ebb2b0f558912ec2c9e6cedad8", + "language": "Python", + "lines": 178, + "truncated": false, + "block": 9, + "row": 9954 + }, + { + "path": "mechanisms/utils.py", + "sha256": "a44103f9b4cdb6a6037a9050e95b0eabd0b48fbe67b11c4def908b7a09008b7b", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 9, + "row": 7369 + }, + { + "path": "sampling/__init__.py", + "sha256": "1acf424e921195d4b7c34db7ae5c7ecd71d67b2cbe74185722a1b6f7c6f2a059", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7089 + }, + { + "path": "sampling/cma_es_parameter_sampler.py", + "sha256": "4afe4d86501bc64d5ff8b60714c91f7dbb0d301f1011169e8979744fd4f79e32", + "language": "Python", + "lines": 241, + "truncated": false, + "block": 9, + "row": 10416 + }, + { + "path": "sampling/flux_concentration_sampler.py", + "sha256": "aafa833e3e57e70252d81c3a12ca9457be58baf925cd58b0e35219cfa2db7666", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7644 + }, + { + "path": "sampling/flux_parameter_function.py", + "sha256": "7955ed2cd07a39391618d9195c9fee72bbe41547ce225541b98dbf73f2befba2", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 9, + "row": 8321 + }, + { + "path": "sampling/ga_flux_concentration_sampler.py", + "sha256": "d7ebf68661d1370da594c5ec0fb7a3e6c9c0b45d5ccf78ed10a1fbd454174a4a", + "language": "Python", + "lines": 243, + "truncated": false, + "block": 9, + "row": 10557 + }, + { + "path": "sampling/ga_parameter_sampler.py", + "sha256": "569b1d7d41b10489257778e6628c1aa98b4c56131aaea873952c98a5618f860d", + "language": "Python", + "lines": 234, + "truncated": false, + "block": 9, + "row": 10401 + }, + { + "path": "sampling/parameter_sampler.py", + "sha256": "065c4d8c2fcd0c05175c9dc9f164e10e776f5b5fd17121eac6c379ecafad4337", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7624 + }, + { + "path": "sampling/saturation_parameter_function.py", + "sha256": "a5a0484164561f73b0e92da3b64ab337f6a84ee055035c4ad09970f290bd8d22", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9672 + }, + { + "path": "sampling/simple_parameter_sampler.py", + "sha256": "3a27e7ae01b6a20d90be20d0deb509e41eddb444581328741d261d6c182f88cc", + "language": "Python", + "lines": 207, + "truncated": false, + "block": 9, + "row": 10391 + }, + { + "path": "sampling/simple_resampler.py", + "sha256": "19c3587c5e35af95e8a732d7054e33c3d6b4a7a6e39f069d95206b9efb06b309", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 9, + "row": 9616 + }, + { + "path": "sampling/utils.py", + "sha256": "567cba7bdbda894a53334e2980c7e6ae837d75f9ccfb1567acd1080465daf5f0", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 9, + "row": 8833 + }, + { + "path": "simulations/reactor.py", + "sha256": "c970a2b8fba8f6376a502fa67a07ba36b38bea9f9f99abc7725bebc177150a0b", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 9, + "row": 8768 + }, + { + "path": "utils/__init__.py", + "sha256": "98966b3c2a9d9df2775b251c9201053863a94c9967fc5128e843cbec40031c88", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 7002 + }, + { + "path": "utils/compile_sympy.py", + "sha256": "a6b443c0218546db8ba52b06f5b6bf81acd3dfd15b8306c00da0139b95c7241b", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 9, + "row": 10146 + }, + { + "path": "utils/constants.py", + "sha256": "9aee5f95c11552f5b9827c5f476f48c0de36affa0dbc7a6097e5bfb0c5d334ab", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7060 + }, + { + "path": "utils/constructors.py", + "sha256": "11644b59a0232924b4642d223630801fb5129baf0a80c2deed55407fa79ab1d8", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 9, + "row": 8040 + }, + { + "path": "utils/conversions.py", + "sha256": "5d1bcba0369e065a2ee8da041c00a7b2305b548118b191b54f922ceae9024df4", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 9, + "row": 7452 + }, + { + "path": "utils/general.py", + "sha256": "1322d25991c36d52dd8891758c26df22058401b32d62b422b5678157a2a1d9bf", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 9, + "row": 9197 + }, + { + "path": "utils/logger.py", + "sha256": "e2e07a74117708db118a8f0fb35a0a748f43fd01258fd827b2981dd5293582ff", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 9, + "row": 7966 + }, + { + "path": "utils/medium.py", + "sha256": "7c19b882ec2d16bf96aa59095af8b88944bdd7bbdcd61bc304bd1717524552e3", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7222 + }, + { + "path": "utils/moieties.py", + "sha256": "880cdaa8010f7fbadc28fec364b9947b804ee39ee5cc43fea68232a48b4da971", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 9, + "row": 8463 + }, + { + "path": "utils/namespace.py", + "sha256": "09fdfd414dbbd437cc32a2d8a9cf4f4f7da7dd7510973ae7bc792664a32717a6", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7268 + }, + { + "path": "utils/scaling.py", + "sha256": "dd9cdca639fa44916f0db185e75b4e54946a90feb44c8042deb54c8fa4413717", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7212 + }, + { + "path": "utils/tabdict.py", + "sha256": "e1413ce13074a48154dc049f12b776c7632d4f65deb11474973f89ec186cff7f", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8133 + }, + { + "path": "utils/tensor.py", + "sha256": "140339916266d462dbed860df6b09daa2829ed6d8fe507f6d6bd40e8476bd96b", + "language": "Python", + "lines": 214, + "truncated": false, + "block": 9, + "row": 9911 + }, + { + "path": "venv/N1-rekindle-data-preprocessing.py", + "sha256": "89532fe487c3eebd80fd2353c68949fcf53689b124a648f8ecb77fbddb5a9dc5", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 9, + "row": 8857 + }, + { + "path": "venv/N2-rekindle-do-cgan-training.py", + "sha256": "09917db41437f492e6d069448ba83599eed39737cfcc910e9a7d4edef5427d80", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8455 + }, + { + "path": "venv/N3-skimpy-calculate-eigenvalues.py", + "sha256": "07cbf96ea6929afc373b85efc023a3b7af850f95fc78f1907158be13c003a537", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7194 + }, + { + "path": "venv/N4-rekindle-generate-using-trained-models.py", + "sha256": "b1d8e4283aa38de5da17205e89d5d1877e4b897ecadf869374daec5b76baf1a1", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 9, + "row": 7079 + }, + { + "path": "venv/N5-skimpy-convert-parameters-to-hdf5.py", + "sha256": "ba115d6cf9fa1000d9f677ab55eecd148dc2c8697666d9b91e56bd21f8634744", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 9, + "row": 9284 + }, + { + "path": "venv/N6-skimpy-integrate-ODEs.py", + "sha256": "7c99e5f4ee08bdd5b86a3950edbdd50a7f08ba1928f8584693f461d026ba5014", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 9, + "row": 9517 + }, + { + "path": "venv/algorithm_classification_test.ipynb", + "sha256": "148782914f7039e7ef5b3424998e71b3d2a781cde3f1ba81f1f96037fff98bad", + "language": "Jupyter", + "lines": 299, + "truncated": false, + "block": 9, + "row": 2464 + }, + { + "path": "venv/bin/activate_this.py", + "sha256": "e3976726c76d39622de4bb554819817c1f04ec094a72786765ef5edd619c95a9", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 9, + "row": 7248 + }, + { + "path": "venv/cGANtools/GAN.py", + "sha256": "d0018fc044f693d80649d43512d5fe21242dd6c126823921afee513f88e0b659", + "language": "Python", + "lines": 300, + "truncated": false, + "block": 9, + "row": 10988 + }, + { + "path": "venv/demo_rekindle.ipynb", + "sha256": "6d95158528bbcb96a288fe13249cbb7543af0d2f94bd51b4ebcfaeba64e411e7", + "language": "Jupyter", + "lines": 248, + "truncated": false, + "block": 9, + "row": 2437 + }, + { + "path": "venv/distance_check.ipynb", + "sha256": "d37cd36d18674f57f8127836c6aaf4cabe88309a9f6939bd8b29016aacfbbfc5", + "language": "Jupyter", + "lines": 135, + "truncated": false, + "block": 9, + "row": 2338 + }, + { + "path": "venv/helper.py", + "sha256": "7cfdb893e1e50ae71cecc97ca32a34e439801f65bf1f92786a8ab7c1cf51da05", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 9, + "row": 7258 + }, + { + "path": "venv/lib/python3.8/site-packages/_distutils_hack/__init__.py", + "sha256": "5f7454880e8a04fa0499ca3f0a3002ca5b7241b15119552965101b4a43c6c0cb", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 6, + "row": 37925 + }, + { + "path": "venv/lib/python3.8/site-packages/_distutils_hack/override.py", + "sha256": "12efecf8d17a5486780aa774b5b6c0e70b56932d8864f35df1eb7a18bb759b3a", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 6, + "row": 20343 + }, + { + "path": "venv/lib/python3.8/site-packages/_virtualenv.py", + "sha256": "684b8c07932ba4a84ac2e5ae9afe49ef04e92bac3d8d4191d455cf09d093e5fc", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 9, + "row": 9722 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/__init__.py", + "sha256": "c65eaf2564e7eec07bbf987ba8f8fe0ad4f37d7bdb05ecd8d45c5ef529a37752", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6563 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/__main__.py", + "sha256": "997c160dfb4d2cc29fc15a8a156184feeb8166f1922225042e12e47b2b08b997", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 6, + "row": 26851 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/__init__.py", + "sha256": "5ef275248ba64277cb345c5545d7ffc6b6e191383558c52b7f61b3ac7dbb1770", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 9, + "row": 6589 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/build_env.py", + "sha256": "da116d6c4a0ee2f0341717a137f7b6a1767fdc4ded02f2a99d599cf2c3988efd", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 9, + "row": 10777 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cache.py", + "sha256": "e9538db6845e1996c177bb2a6359fa87091d582e22cf7b665f05f0663a6364ac", + "language": "Python", + "lines": 287, + "truncated": false, + "block": 7, + "row": 2846 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/__init__.py", + "sha256": "1641c1829c716fefe077aaf51639cd85f30ecc0518c97a17289e9a6e28df7055", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 6, + "row": 20840 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/autocompletion.py", + "sha256": "af619049a1c78a6d4bc0f84c68ef4c3de29db12bf91fc4bd12556c981c9035ec", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 9, + "row": 9956 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/base_command.py", + "sha256": "dba3079e5cd9482f969368f6386b010ece5c97695a76ba2f272572d7fda0d199", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 9, + "row": 10348 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/cmdoptions.py", + "sha256": "e76248c8fe42eb24fc0e94f53b666c78063ebccbcb4dbf05a8ed20f3938560cb", + "language": "Python", + "lines": 1024, + "truncated": false, + "block": 9, + "row": 12193 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/command_context.py", + "sha256": "936245e563ec3f530d29a5d62bc8d915b26161f7f391dbc668fb0be77b596c35", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6922 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/main.py", + "sha256": "1bf3ac63ae85651b662eb309e24de6efbb66b6c451450777ffeaa57b596f9a78", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 9, + "row": 8222 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/main_parser.py", + "sha256": "1bbd19d5f5cb633789baea2d8302b0abe75a089d230a6987c71e9a147cfa5804", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 9, + "row": 8317 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/parser.py", + "sha256": "af1e30e88803d0e6e2eedd64f66574ce5621cbf0ee0a86830aa86450a30e14d5", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 10980 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/progress_bars.py", + "sha256": "724fc82e38ba6914c6d33c576a39cf588a504c6c53ce6de7b1c64ec703664d6a", + "language": "Python", + "lines": 261, + "truncated": false, + "block": 9, + "row": 10552 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/req_command.py", + "sha256": "ade7cfc9974aba5bab89d70b68275226d832605721c5df72f2930ca7fecf3beb", + "language": "Python", + "lines": 461, + "truncated": false, + "block": 9, + "row": 11623 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/spinners.py", + "sha256": "54b752582bf29372a892e8cbc817ff40a61c19bade3d0a0f078bfb8ea1bbc720", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 9, + "row": 9599 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/cli/status_codes.py", + "sha256": "b0414751a5096eabfc880acbdc702d733b5666618e157d358537ac4b2b43121d", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 6, + "row": 20754 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/__init__.py", + "sha256": "bfec6697ca0cc2b4210a9980a64a5c30e13decca7c41a071a1139b9c64b8dfff", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 8904 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/cache.py", + "sha256": "0042dff7c45647f82253dc25d114977fe32c4f23b91bf8b03b4887a05e056e67", + "language": "Python", + "lines": 228, + "truncated": false, + "block": 9, + "row": 10251 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/check.py", + "sha256": "0edd30ecda85a7ca3fe3927bc37d8642b29ececcf6bf0a3f53c526b070fd60d2", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7572 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/completion.py", + "sha256": "5314b4f6cf2b127534f000223778077502235385c64a5bf9489deb209753ca10", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 9, + "row": 8494 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/configuration.py", + "sha256": "5f57dd55d120f0c1c5b40ad4fb76cce9604d6b1d44ed9eeab333c47652b5ceaa", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 9, + "row": 10677 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/debug.py", + "sha256": "ca7b4ea65c3ddd56684005410770573cabaa6da9b8993e9312b6acb45c05cb7b", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 9, + "row": 10089 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/download.py", + "sha256": "ceff12fc3376fa4e8ad15491df208f2d2acb7a1a18923dc8bf23b51e8f2df15e", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 9, + "row": 9456 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/freeze.py", + "sha256": "bcf560bb005bd79b9bbfc12cf683d2c9678f05ed9cab7f50c635382a2cde4f09", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 9, + "row": 8778 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/hash.py", + "sha256": "8a9eb802c27a105504696283bec6667501e4b35253120ac38c7e5bca5f886327", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 9, + "row": 7671 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/help.py", + "sha256": "e8c9f3ada93f8fec84de9b030aa8b61b121226a219274e0339b294f50867c4c1", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 9, + "row": 7197 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/install.py", + "sha256": "685bd941f3eb32b1c36fa8e36e6ad5972bc3c4c21e5f765c64a490bd8e9cd0a2", + "language": "Python", + "lines": 740, + "truncated": false, + "block": 9, + "row": 12143 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/list.py", + "sha256": "8dfa834b8c6f9ba595f2b1d54a6be9688f35d6e92f0f83a23d9c0618a330c242", + "language": "Python", + "lines": 319, + "truncated": false, + "block": 9, + "row": 11020 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/search.py", + "sha256": "1307063e40c34f014ca62d8f04a84fb965f660130f732ecec755857169e8b9ac", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 9, + "row": 9701 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/show.py", + "sha256": "b33daf6f187897b063e232a59031931d80fa23cfddb92a525055715221f8e314", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 9, + "row": 10106 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/uninstall.py", + "sha256": "103731ddad3797753cb69676a787df21d9f8e61636605126abdca879c705da8c", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 9, + "row": 8643 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/commands/wheel.py", + "sha256": "c0a19292cb988e38603986bf8c3eae95a2a93d7694ccf8b2cdf44d353e033a2a", + "language": "Python", + "lines": 178, + "truncated": false, + "block": 9, + "row": 9908 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/configuration.py", + "sha256": "4012df86ffac6cffa8474f0d1714989effe62c1f9282d34eb165c017db4311c3", + "language": "Python", + "lines": 403, + "truncated": false, + "block": 7, + "row": 5781 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/distributions/__init__.py", + "sha256": "a30d623d6fd0a7e4cec8e53e5a084e282f2f02fd7f4b2935cc44d954efef2841", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 9, + "row": 6961 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/distributions/base.py", + "sha256": "5159dd6a89348ce1eb2c7d09a8dd18ce5c55127bc542e998cb7edd898dd90ae1", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 9, + "row": 7289 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/distributions/installed.py", + "sha256": "b9a4cc3ef63786bfccd410b2d74eef2475aca4a30982b3f1bf7d16dffcd96744", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6799 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/distributions/sdist.py", + "sha256": "728f1f351f2a2211d12c19dcc15f76a09edef0838218f804b1b10574d3e4d589", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 9028 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/distributions/wheel.py", + "sha256": "9fd32a3685b232a36c71f6cd79eaa1d5bceda19522079c751fd878b457e2254c", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7256 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/exceptions.py", + "sha256": "d89409492ebca20811fd920e03e8755360d10035116e4427f4d7f8119599f37e", + "language": "Python", + "lines": 397, + "truncated": false, + "block": 7, + "row": 5421 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/index/__init__.py", + "sha256": "be9b7e25e4d979f87c6be142db665e0525c555bb817174868882e141925a3694", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 6, + "row": 20234 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/index/collector.py", + "sha256": "6845ed1cad0b6b89c63fb9aee4de42437b667e369cccbc1b1a2f00af8a06cf9a", + "language": "Python", + "lines": 556, + "truncated": false, + "block": 9, + "row": 11725 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/index/package_finder.py", + "sha256": "dc9f51cead4d00eda9ff30dbe1fbf7dc6781041398bac57d917b409f68fa7825", + "language": "Python", + "lines": 1012, + "truncated": false, + "block": 9, + "row": 12362 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/index/sources.py", + "sha256": "495c8f8adbf4f3e41a961dbf064e5d88027d18003f77e6bdde4a28b90a1d006d", + "language": "Python", + "lines": 224, + "truncated": false, + "block": 6, + "row": 44255 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/locations/__init__.py", + "sha256": "f445d1c42a7288c0a553cefe3f913aead705c726dc03f2b32ebcdc2b656def3b", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 9, + "row": 9399 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/locations/_distutils.py", + "sha256": "2f97e5452afd047d250703d497ad5cc817353a7543d3a14e10d9033118f2837f", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 9543 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/locations/_sysconfig.py", + "sha256": "4edf2090deec8716eaa14973a8cd7d9b28814736dfb7d0b39267124b8607935b", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 9, + "row": 9816 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/locations/base.py", + "sha256": "41b929826cc86d606750bdbfdeabb6f6ca8235ec28a986e4570f0a9a28117b67", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7495 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/main.py", + "sha256": "059d2f91daa0a68b5e4e8d40d50f28bc57bc13380a14958e5233e621441f1826", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 6, + "row": 21984 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/metadata/__init__.py", + "sha256": "288351f1960efe295cda9915dede4a7102f358b35cdc68d90e4946593549fb35", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7490 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/metadata/base.py", + "sha256": "e81881fdbde5bcd1d821529bceb0e18b46c999296ce50d4afa205e1d694a9c8c", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 9370 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/metadata/pkg_resources.py", + "sha256": "e0554fc58140050ff5b5b87f0910732b8c74fd22201f5b822b1d992f2864a2e4", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 9, + "row": 9180 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/__init__.py", + "sha256": "dc31d477fab1a4fa337f3a2ea2a6bd83db6cd42cebe6a6877c5c5b9f1ae27a93", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 6, + "row": 20476 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/candidate.py", + "sha256": "2e5c8617648c1a379eb7d6cb6c40330160cff3659ca77df8d98b1aeed096ffd3", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7082 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/direct_url.py", + "sha256": "56b9c934ea9c3f39df35aae34096afb31dad806ec67dc2dae8fc990ae7ff2fb0", + "language": "Python", + "lines": 233, + "truncated": false, + "block": 9, + "row": 10026 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/format_control.py", + "sha256": "9768e9e3b996b09a7bf8bc4cb34e65f53faa160f59e4fc1dc8ff51ed773f5594", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 9, + "row": 8307 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/index.py", + "sha256": "6ac32b69954f234b27c9ee34e06ced1295e029eae3d72005999976a7778de018", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 9, + "row": 7144 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/link.py", + "sha256": "e707476c60cb6da7d2758a68d8acbb17d451a36dbacd1cba8a4ddc2c7ffc2b07", + "language": "Python", + "lines": 248, + "truncated": false, + "block": 9, + "row": 10270 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/scheme.py", + "sha256": "8aa71e0bb80a8939f664b8023a01906dc9a8e3d4d183d1274144ac407dd4fbb0", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 9, + "row": 6896 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/search_scope.py", + "sha256": "e2e18d12a62bcf892eebf5b3a30aa2bee32f3747e3e57434dd6075e188dc3795", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 9, + "row": 9314 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/selection_prefs.py", + "sha256": "68d4432fdec6cf7c96256de8834caebce914d3650bf0e78d403b836ad67c483a", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7869 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/target_python.py", + "sha256": "48b186df3f4f8ff0a20398e6327343bf630ddd24f791e56e6a7543cd3bcee693", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 9, + "row": 9057 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/models/wheel.py", + "sha256": "3168f142404d5c8e97396893bb3306eee38d845bbcc40f783aa0fff41b88b157", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 8867 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/network/__init__.py", + "sha256": "8dfe93b799d5ffbce401106b2a88c85c8b607a3be87a054954a51b8406b92287", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 6, + "row": 20395 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/network/auth.py", + "sha256": "77c0dfd1fcb4d4fd632651775c330cf000b292d47570df735111bec9ed6771cd", + "language": "Python", + "lines": 312, + "truncated": false, + "block": 9, + "row": 11101 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/network/cache.py", + "sha256": "27fc69b0b59b46b942494710840e7e4ee4f92d6225a55b531f87d9d574a3c9be", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8046 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/network/download.py", + "sha256": "f1fadbd9b20d39ffa36e614f6a929bc843bdb235c95891ba389696e2143daf7b", + "language": "Python", + "lines": 196, + "truncated": false, + "block": 9, + "row": 9923 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/network/lazy_wheel.py", + "sha256": "5cc7eb0cad48072e382f71b1dd467607cb3dd154570daf7ae76d0838f9b398e5", + "language": "Python", + "lines": 224, + "truncated": false, + "block": 9, + "row": 10394 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/network/session.py", + "sha256": "5477a2a2b3df9583cd58ada933fab6d9cf87e6099104387d50a0895b75405052", + "language": "Python", + "lines": 449, + "truncated": false, + "block": 9, + "row": 11570 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/network/utils.py", + "sha256": "baa4fa4243bd347530a93c3780705631015d698a9869b078db741466e8900f77", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 9104 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/network/xmlrpc.py", + "sha256": "08bd5604e4e0c4fc1b719e90b9b678a574178dbeea4d31694d415ef9969691c0", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7657 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/build/metadata.py", + "sha256": "8c9a74e51ae9d0032c41bee2cc35db3460b52ed3cdc0e847423edc44ce77db87", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7215 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/build/metadata_legacy.py", + "sha256": "10230184b10f110bfa3d4502a4f0975bec0df50457758e393cd5c9bfb0592935", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 7841 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/build/wheel.py", + "sha256": "5982ccc6ec6a3776a1253424d8c23d85d999281a45cb11de36951d3b43f26f15", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7158 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/build/wheel_legacy.py", + "sha256": "34e2614d831896375b8b3168fd68e468a1961b548467a681cab05d0abaec641f", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 8647 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/check.py", + "sha256": "3ad319d9f7f4ce4f0686997b7885f2499e03f290947f33c060da464f1c35a965", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 9, + "row": 9560 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/freeze.py", + "sha256": "0fe7b1d01c32e84d04552fe01e58b1944a4a0e94711599d4993cbb9dff2ceedb", + "language": "Python", + "lines": 264, + "truncated": false, + "block": 9, + "row": 10822 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/install/__init__.py", + "sha256": "997ee1c83d863413b69851a8903437d2bfc65efed8fcf2ddb71714bf5e387beb", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 6, + "row": 20404 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/install/editable_legacy.py", + "sha256": "6e304e6df13ab33dd498623bcb8f860a029ad969938275a514553b6fe8b4b10b", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 9, + "row": 7430 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/install/legacy.py", + "sha256": "7f9f5f41b34b3b6aef97c6cd426fc2b96e9d80fbd75d0ef2e5aa6e956662d351", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 9, + "row": 9149 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/install/wheel.py", + "sha256": "d605761bea30940da2c1c6f160073804e4e23d144607c4f3a6e534c2e84cd954", + "language": "Python", + "lines": 819, + "truncated": false, + "block": 9, + "row": 12215 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/operations/prepare.py", + "sha256": "0171cd83588671e835972a83a9b71a6e600521f4359357087e09956392425a8a", + "language": "Python", + "lines": 655, + "truncated": false, + "block": 9, + "row": 12072 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/pyproject.py", + "sha256": "6cdfdd962155c68acb213c421334f45263d81684aa93fbc606d3354308906b2b", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 9, + "row": 10142 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/req/__init__.py", + "sha256": "95134706fd1901935b4b099753e5d4766eba82c88d9ae8810e2d431582788484", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 8513 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/req/constructors.py", + "sha256": "e2c8a719deecaca848f780d5e973bea915f633a2abf74ece166b1f9252abb7ae", + "language": "Python", + "lines": 486, + "truncated": false, + "block": 9, + "row": 11574 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/req/req_file.py", + "sha256": "9cf205976322f540c686b8fe2b4137fd0ba017bb65dd4043b72d5ccdb205edf9", + "language": "Python", + "lines": 551, + "truncated": false, + "block": 9, + "row": 11706 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/req/req_install.py", + "sha256": "451da691a014d91103b63658de7472d288dc500fc17f42698d7f594f265451ae", + "language": "Python", + "lines": 892, + "truncated": false, + "block": 9, + "row": 12295 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/req/req_set.py", + "sha256": "02eb6c6a2576b3ed882f0b56b530383895bf64b460e065e0eb033463f8596f59", + "language": "Python", + "lines": 199, + "truncated": false, + "block": 9, + "row": 10366 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/req/req_tracker.py", + "sha256": "5ee3f0797d656c95d3da04a40972024b98676ba6f299ee4f790a783a4f3e476a", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 9, + "row": 9233 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/req/req_uninstall.py", + "sha256": "8000a29d321c49c646c3cd6a2da15d4e3f4a197955b82a6bbbb5ef1c68c813e1", + "language": "Python", + "lines": 640, + "truncated": false, + "block": 9, + "row": 12026 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/base.py", + "sha256": "4f84277d284912ba4f59ee223a23bb5665eecf56f17b6d0b2cdb37dc052c9583", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 9, + "row": 6704 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/legacy/resolver.py", + "sha256": "385ffa621e21ac57c9e2ed072c5e19441940f2504751f01a16786e54a21084f3", + "language": "Python", + "lines": 462, + "truncated": false, + "block": 9, + "row": 11701 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/resolvelib/base.py", + "sha256": "31b6a4caa4a8b41195269237900a6aa8fd9f3cf66287d0e0b1f929b8577e0033", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 9, + "row": 9730 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/resolvelib/candidates.py", + "sha256": "744292b8af41e4ce767354ae801e37cd79e7c603563536bb8420b022d497eb57", + "language": "Python", + "lines": 604, + "truncated": false, + "block": 9, + "row": 11827 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/resolvelib/factory.py", + "sha256": "b5aa9e0e65e4d24018f4456a48c84426b898d363124a16d9bedf55a84020930e", + "language": "Python", + "lines": 661, + "truncated": false, + "block": 9, + "row": 12085 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/resolvelib/found_candidates.py", + "sha256": "173c4a73385e9771a156238811f18751f510eab3775346e530c52ebbe6e51df5", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 9621 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/resolvelib/provider.py", + "sha256": "1d82139e3b3b85cc431803420dd2f8aa0d8c2756b0d6303d70ccb134fda62eb9", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 9, + "row": 10319 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/resolvelib/reporter.py", + "sha256": "c60682b572e3efdd40fea45f57d6359d719e69656adc9134ca0200dd83515aad", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 9, + "row": 8381 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/resolvelib/requirements.py", + "sha256": "7c5d911fa5426a74ee17e8b0bbcb5963c061d056a40c14f0eed9032724eccbd1", + "language": "Python", + "lines": 198, + "truncated": false, + "block": 9, + "row": 9849 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/resolution/resolvelib/resolver.py", + "sha256": "de1967ad9925b33154c06405177de72e410ef24c73e2f677fee2a9fcbf18be61", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 9, + "row": 11129 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/self_outdated_check.py", + "sha256": "8afa1461a1aeabe45afc3be566f3ed1e181b63decd28762e3c6ceb80dd86d40f", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 6, + "row": 44143 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/appdirs.py", + "sha256": "1c208568ead93a730bcd10e929770c88587fda4599f8fcc574df2978b8b090d6", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7273 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/compat.py", + "sha256": "239f2d4d9deaa8666a78654ffe611133c37b40fbbbd6788ba717cedc88f68df4", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7837 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/compatibility_tags.py", + "sha256": "21c4041c2649bdd7ca7220029971822addfd628836fd0d9740a307a2303fda98", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 9, + "row": 9699 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/datetime.py", + "sha256": "6e265d109110046abc03e37ba28a68b22a5e1b39921dd234597eb492597f004b", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6484 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/deprecation.py", + "sha256": "083f60535ce60ed0b7364d93335e0556901afdbc4231dd372b1e6ddcba05c248", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 9, + "row": 8674 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/direct_url_helpers.py", + "sha256": "f9c859531749905446fa9036318eff5a28b9539a35f28e4ae00a81b1677ddbe7", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 9, + "row": 9048 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/distutils_args.py", + "sha256": "2b15936b3d3b03fd6e902cb0fe935a87e8bab01beb56d74cb2717c8e0b833584", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 9, + "row": 7309 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/encoding.py", + "sha256": "4f47104e4181efeb37c22bcb94770a6caaaf268334c8b768f28b7cf4b946773d", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7235 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/entrypoints.py", + "sha256": "9b851790b6539cfb1d4a2b10ccd1621ccd4265c30af0dd4203df20e0e45ec767", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 9, + "row": 7129 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/filesystem.py", + "sha256": "6b7ae7a1407f1d37446c368050748d30f207a8776ce1403e98b4396ef80e8d24", + "language": "Python", + "lines": 193, + "truncated": false, + "block": 9, + "row": 9847 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/filetypes.py", + "sha256": "c1ebe255b6a91d6550ffcf8af8f4d0fd39d82faea4662e12ad50539916195cb7", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 6, + "row": 24227 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/glibc.py", + "sha256": "18cd58da15a439ffedba6c9218583e88d6dcee88a505042b8dccdbffbd39085f", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 6, + "row": 36381 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/hashes.py", + "sha256": "a35a90124a9ed80aac466fc984ba0ce21931995b5ec07d1966943a10139b1ee5", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 6, + "row": 41682 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/inject_securetransport.py", + "sha256": "b4697d060cadd881cab41ddbd01fbaaf75b6c981773a0f8f05ed3ae3b4b7959b", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 6, + "row": 24495 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/logging.py", + "sha256": "064a774128eeaf77a492e9c0227b0627a96ceca17c00d4ed0601a18d8d2f96d8", + "language": "Python", + "lines": 387, + "truncated": false, + "block": 9, + "row": 11137 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/misc.py", + "sha256": "17b2c36fa3d02309e26302dcce1536a520321d9f5b9d3553d7223f39db98877c", + "language": "Python", + "lines": 821, + "truncated": false, + "block": 9, + "row": 12017 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/models.py", + "sha256": "a82818c94c369881f5a6899bb09dd842c32d38d660c89e011b03b93099d20b87", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 6, + "row": 27889 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/packaging.py", + "sha256": "235f77f0007b169adc54925de82d2f4a232e0956a39abc59179e6f5f98f46cca", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 6, + "row": 35466 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/parallel.py", + "sha256": "45917825d74f11655b9243c29277efa6a68b7e6dcf9aa77f001a021e6578957b", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 6, + "row": 36562 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/pkg_resources.py", + "sha256": "8f01f925588f7be2655cbbcb0b4f8049f4d309162f9b4bbd0b04067168f14ad2", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 6, + "row": 26246 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/setuptools_build.py", + "sha256": "c64f6c4418d4c8d4c7b3f4ef11679b556b3519f2cf376d3c333a525ebf4e93f0", + "language": "Python", + "lines": 173, + "truncated": false, + "block": 6, + "row": 41405 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/subprocess.py", + "sha256": "bb168fdc8ccf8816211b431b75f3cafee721640876eee677c0edeae6145f132a", + "language": "Python", + "lines": 281, + "truncated": false, + "block": 9, + "row": 10829 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/temp_dir.py", + "sha256": "f60b3737d1907955d15568c921a952a47d6e8fcc905cf4f36ab6f99f5fc7315a", + "language": "Python", + "lines": 260, + "truncated": false, + "block": 7, + "row": 663 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/unpacking.py", + "sha256": "3e2a186307d30a7fd57987abf34a2786b3bd6358207ada8e3d23aba06dfc6d14", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 9, + "row": 10644 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/urls.py", + "sha256": "5f38d0b0719dd980e6261a02a20b293d3aa1e8a979b4610d4473dcc234b4242e", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7302 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/virtualenv.py", + "sha256": "8914cafac0fa6d6a47a97719d0409f76914b59ab4c3871545422116b42fa1aed", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 6, + "row": 37589 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/utils/wheel.py", + "sha256": "0ce21565a5cdedb30e01e304ab320e6471a5e0e14ef8a1ab12a05407ce3c0cfa", + "language": "Python", + "lines": 189, + "truncated": false, + "block": 6, + "row": 43838 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/vcs/__init__.py", + "sha256": "0a3cb11c281db75f65db58f4b491a243fe9893c9be2969904e1998be58ddd5ea", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6712 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/vcs/bazaar.py", + "sha256": "032fef37ef3bbd8484cc1a974f7455c25e34be5939ea3de3cbf01f41b323e2ea", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 6, + "row": 35676 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/vcs/git.py", + "sha256": "511533d644aa84386a26cafdba56854dec0ff198f07fba153cfeec91d8fd48c4", + "language": "Python", + "lines": 450, + "truncated": false, + "block": 9, + "row": 11502 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/vcs/mercurial.py", + "sha256": "d97dde232780590588d93c683d3fb1b95b03e9fc6bed84b21f0e0c47d116cf83", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 9, + "row": 9479 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/vcs/subversion.py", + "sha256": "94f7c2bbce352403111bf8d35ff4db459ac1a4a748779790f2deffc48ef0dcbd", + "language": "Python", + "lines": 329, + "truncated": false, + "block": 9, + "row": 11106 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/vcs/versioncontrol.py", + "sha256": "37ad1348c6d3afbf400f347ad410ab93c62881441c0419cd68b8093d37d7b1f7", + "language": "Python", + "lines": 715, + "truncated": false, + "block": 9, + "row": 12004 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_internal/wheel_builder.py", + "sha256": "856eb7666001afae6b3a24910475eed63054744670e4b662c342da4016f3d252", + "language": "Python", + "lines": 360, + "truncated": false, + "block": 7, + "row": 4387 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/__init__.py", + "sha256": "802ad0c0f058d8e64179e76f28e2dd459dd6d4b21133ad1f1ba7789a05bffbd6", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 9, + "row": 9376 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/appdirs.py", + "sha256": "33a218449b5d6609923c25c248c051074553dcff0c7456d60836d22eb07611b8", + "language": "Python", + "lines": 633, + "truncated": false, + "block": 7, + "row": 10004 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/__init__.py", + "sha256": "a49b40694c4eb0c3e7cad2350378ee009917603afc92b7529ec838620dce0448", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 6, + "row": 21732 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/_cmd.py", + "sha256": "511184d0aac0f3b41e9021b74863dab6548f4f9ef57594c38cd6be6575f7a437", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 6, + "row": 27599 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/adapter.py", + "sha256": "b12c1a49877ddc821f085538b4e3204a8e9bd8b0adfe0052690523f24b4914e0", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 6, + "row": 41040 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/cache.py", + "sha256": "d5f738c093fc1d8b75c9c9c95de130e690a97812f60aac71ea0f456f40180d64", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 6, + "row": 24468 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/caches/__init__.py", + "sha256": "fa01cd298bda783d243a4e4cef878eaec4a020a52d0ba8ba19f6e6ba01b0784a", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 6, + "row": 20616 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/caches/file_cache.py", + "sha256": "9d854ab09b5787a8095ef767d625b2ae1c6f930a50acaf9e2a8311cee8b090a9", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 6, + "row": 39193 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/caches/redis_cache.py", + "sha256": "1f17a5329342a3e758af67e2243c0cde1861466c5462d079b579b51a90004f86", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 6, + "row": 24742 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/compat.py", + "sha256": "90736f31176deacfd7c2aabff6a266afda2edf060c38c50cc4f3dcc0dc53f0c7", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 6, + "row": 23843 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/controller.py", + "sha256": "096117de979d20cf6ceb4b2e7f8cd93ed9bf26f5609efa203062bf3a2046e45f", + "language": "Python", + "lines": 376, + "truncated": false, + "block": 7, + "row": 6040 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/filewrapper.py", + "sha256": "bc008a3bc2e5ceefd95b28d5d45c67d4c0384c653ad0de4ddc64ab0057406364", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 6, + "row": 34180 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/heuristics.py", + "sha256": "045187277c90731bd98b37e8f742cb674e13fd9e574825ef168b6ba7b52cd2c7", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 6, + "row": 38979 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/serialize.py", + "sha256": "bc86b88efab8c7f29238b74421e7689275f669760742e8cb0c5578f85db50e7a", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 6, + "row": 45111 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/cachecontrol/wrapper.py", + "sha256": "e4b5f4b89c2435052d612130dda1a61aef5663cc068a977cd6627c946d1dd0ce", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 6, + "row": 23822 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/certifi/__init__.py", + "sha256": "4ac99d9851e31c263854bb6ac29a7d3ff8ec39c02e1e3fb97395aaa04cfea058", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 9, + "row": 6162 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/certifi/__main__.py", + "sha256": "d64dc2afde6f0b1c464460e58eb5b7c0c76965d2f73617f4bb59fe936a9db026", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 6, + "row": 21482 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/certifi/core.py", + "sha256": "80e15dd331d8971e24aeb2c49fdf367ac3ad9b3ddd8e21b40454838608e5bdc2", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 9, + "row": 8426 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/__init__.py", + "sha256": "99665a5a6bd9921c1f044013f4ed58ea74537cace14fb1478504d302e8dba940", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 6, + "row": 36720 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/big5freq.py", + "sha256": "0ffccae46cb3a15b117acd0790b2738a5b45417d1b2822ceac57bdff10ef3bff", + "language": "Python", + "lines": 386, + "truncated": false, + "block": 7, + "row": 10791 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/big5prober.py", + "sha256": "901c476dd7ad0693deef1ae56fe7bdf748a8b7ae20fde1922dddf6941eff8773", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 6, + "row": 30651 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/chardistribution.py", + "sha256": "df0a164bad8aac6a282b2ab3e334129e315b2696ba57b834d9d68089b4f0725f", + "language": "Python", + "lines": 233, + "truncated": false, + "block": 7, + "row": 2286 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/charsetgroupprober.py", + "sha256": "1992d17873fa151467e3786f48ea060b161a984acacf2a7a460390c55782de48", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 9, + "row": 8984 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/charsetprober.py", + "sha256": "2929b0244ae3ca9ca3d1b459982e45e5e33b73c61080b6088d95e29ed64db2d8", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 6, + "row": 41551 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/cli/__init__.py", + "sha256": "01ba4719c80b6fe911b091a7c05124b64eeece964e09c058ef8f9805daca546b", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4956 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/cli/chardetect.py", + "sha256": "5cae73aa3506d9ae3ecba78b1d9f13858729e96594add96610bc4dca971cd921", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 9, + "row": 8368 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/codingstatemachine.py", + "sha256": "558a7fe9ccb2922e6c1e05c34999d75b8ab5a1e94773772ef40c904d7eeeba0f", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 6, + "row": 37659 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/compat.py", + "sha256": "e34cebeb0202670927c72b8b18670838fcaf7bc0d379b0426dbbedb6f9e6a794", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 6, + "row": 26864 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/cp949prober.py", + "sha256": "4d9e37e105fccf306c9d4bcbffcc26e004154d9d9992a10440bfe5370f5ff68c", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 6, + "row": 31125 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/enums.py", + "sha256": "0229b075bf5ab357492996853541f63a158854155de9990927f58ae6c358f1c5", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 6, + "row": 30124 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/escprober.py", + "sha256": "924caa560d58c370c8380309d9b765c9081415086e1c05bc7541ac913a0d5927", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 6, + "row": 38642 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/escsm.py", + "sha256": "46e5e580dbd32036ab9ddbe594d0a4e56641229742c50d2471df4402ec5487ce", + "language": "Python", + "lines": 246, + "truncated": false, + "block": 7, + "row": 3383 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/eucjpprober.py", + "sha256": "883f09769d084918e08e254dedfd1ef3119e409e46336a1e675740f276d2794c", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 6, + "row": 38090 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/euckrfreq.py", + "sha256": "fbb19d9af8167b3e3e78ee12b97a5aeed0620e2e6f45743c5af74503355a49fa", + "language": "Python", + "lines": 195, + "truncated": false, + "block": 7, + "row": 5675 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/euckrprober.py", + "sha256": "32a14c4d05f15b81dbcc8a59f652831c1dc637c48fe328877a74e67fc83f3f16", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 6, + "row": 30598 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/euctwfreq.py", + "sha256": "368d56c9db853a00795484d403b3cbc82e6825137347231b07168a235975e8c0", + "language": "Python", + "lines": 387, + "truncated": false, + "block": 7, + "row": 10839 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/euctwprober.py", + "sha256": "d77a7a10fe3245ac6a9cfe221edc47389e91db3c47ab5fe6f214d18f3559f797", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 6, + "row": 30594 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/gb2312freq.py", + "sha256": "257f25b3078a2e69c2c2693c507110b0b824affacffe411bbe2bc2e2a3ceae57", + "language": "Python", + "lines": 283, + "truncated": false, + "block": 7, + "row": 8804 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/gb2312prober.py", + "sha256": "806bc85a2f568438c4fb14171ef348cab9cbbc46cc01883251267ae4751fca5c", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 6, + "row": 30633 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/hebrewprober.py", + "sha256": "737499f8aee1bf2cc663a251019c4983027fb144bd93459892f318d34601605a", + "language": "Python", + "lines": 292, + "truncated": false, + "block": 7, + "row": 5850 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/jisfreq.py", + "sha256": "be9989bf606ed09f209cc5513c730579f4d1be8fe16b59abc8b8a0f0207080e8", + "language": "Python", + "lines": 325, + "truncated": false, + "block": 7, + "row": 9980 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/jpcntx.py", + "sha256": "3d894da915104fc2ccddc4f91661c63f48a2b1c1654d6103f763002ef06e9e0a", + "language": "Python", + "lines": 233, + "truncated": false, + "block": 7, + "row": 8470 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/langbulgarianmodel.py", + "sha256": "ae4f42269bb13b46ce6dba0972fea03605aea2c61999df2a10476ce72ec34bf6", + "language": "Python", + "lines": 4650, + "truncated": false, + "block": 8, + "row": 1031 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/langgreekmodel.py", + "sha256": "4beb8d4358a10bbe72841bd2bb1db880b159bf743272d3300ba3b12c9757f9bc", + "language": "Python", + "lines": 4398, + "truncated": false, + "block": 8, + "row": 1006 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/langhebrewmodel.py", + "sha256": "0f33cfe933c61bff8f57bb6ab29bbf77c76eb9eaa6eee37ee5e434687530d468", + "language": "Python", + "lines": 4383, + "truncated": false, + "block": 8, + "row": 1001 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/langhungarianmodel.py", + "sha256": "46d247ec365db26687ab22b8e8a9269e4e70407889c093cf252aaa225a5e6517", + "language": "Python", + "lines": 4650, + "truncated": false, + "block": 8, + "row": 1016 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/langrussianmodel.py", + "sha256": "4c7a893a14b189341c1dba03352739ca87dcda4a175d01471728edcae9ed51f3", + "language": "Python", + "lines": 5718, + "truncated": false, + "block": 8, + "row": 1108 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/langthaimodel.py", + "sha256": "475c171e750cb5e8e9c342671ff24ef177586ac304eb08d5aa9d733fb4ca2e08", + "language": "Python", + "lines": 4383, + "truncated": false, + "block": 8, + "row": 1019 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/langturkishmodel.py", + "sha256": "adfc1a9d3a6d4f04b2704e3e3fe41ab0f9b377e5d56207afcadce3944cc106ef", + "language": "Python", + "lines": 4383, + "truncated": false, + "block": 8, + "row": 981 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/latin1prober.py", + "sha256": "4b6228391845937f451053a54855ad815c9b4623fa87b0652e574755c94d914f", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 6, + "row": 42099 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/mbcharsetprober.py", + "sha256": "011f797851fdbeea927ef2d064df8be628de6b6e4d3810a85eac3cb393bdc4b4", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 6, + "row": 37155 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/mbcsgroupprober.py", + "sha256": "87a4d19e762ad8ec46d56743e493b2c5c755a67edd1b4abebc1f275abe666e1e", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 6, + "row": 31876 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/mbcssm.py", + "sha256": "498df6c15205dc7cdc8d8dc1684b29cbd99eb5b3522b120807444a3e7eed8e92", + "language": "Python", + "lines": 572, + "truncated": false, + "block": 7, + "row": 9917 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/metadata/languages.py", + "sha256": "e35b4bab778b4ab0446c455542954616af4aee8d659fd6f51e9635974842510a", + "language": "Python", + "lines": 310, + "truncated": false, + "block": 9, + "row": 11799 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/sbcharsetprober.py", + "sha256": "9e6c8ccaec731bcec337a2b7464d8c53324b30b47af4cad6a5d9c7ccec155304", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 9886 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/sbcsgroupprober.py", + "sha256": "86a79f42e5e6885c83040ace8ee8c7ea177a5855e5383d64582b310e18f1e557", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 9, + "row": 9202 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/sjisprober.py", + "sha256": "208b7e9598f4589a8ae2b9946732993f8189944f0a504b45615b98f7a7a4e4c4", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 6, + "row": 38150 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/universaldetector.py", + "sha256": "0e96535c25f49d41d7c6443db2be06671181fe1bde67a856b77b8cf7872058ab", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 7, + "row": 4956 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/utf8prober.py", + "sha256": "21d0fcbf7cd63ac07c38b8b23e2fb2fdfab08a9445c55f4d73578a04b4ae204c", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 6, + "row": 35038 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/chardet/version.py", + "sha256": "0380882c501df0c4551b51e85cfa78e622bd44b956c95ef76b512dc04f13be7f", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 6, + "row": 21393 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/colorama/__init__.py", + "sha256": "a42744aebcb32d2cc35b93fead13c194f2ea6c1b4844d241e9c320a1e267b399", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6473 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/colorama/ansi.py", + "sha256": "4e8a7811e12e69074159db5e28c11c18e4de29e175f50f96a3febf0a3e643b34", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 9, + "row": 8242 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/colorama/ansitowin32.py", + "sha256": "c95ec212609bd7d3239c928e0d9104bcc1ff7e76c98709e9ce8e2cc59b865e60", + "language": "Python", + "lines": 258, + "truncated": false, + "block": 9, + "row": 10899 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/colorama/initialise.py", + "sha256": "3e9ae8bc3371313aefa0d1c570bd8d663a47d97cc373c04bc4bc6212b7d49789", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 6, + "row": 31404 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/colorama/win32.py", + "sha256": "6c9f0897d8f0681379049f1b98de85a18675418b8c2afda3f1f1ab5e1ed3263c", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 6, + "row": 42168 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/colorama/winterm.py", + "sha256": "db2ff66fb66cbf7e1f780b0febb98b39573e060ab9d667581a8e7bd55a6b96b3", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 6, + "row": 44070 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/__init__.py", + "sha256": "def780936acfce7381da0b0aead8db6e1d1340c9861393fcd9e13dc17aba3489", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6724 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/_backport/__init__.py", + "sha256": "6ea4bf753387eae5bd88681dd2ecdfa4f8e8eaf678c693d9ee4c9f649daf35ac", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 6, + "row": 21602 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/_backport/misc.py", + "sha256": "29679c20d75b14d3b148e3f57c617af340899da0ba4b87c146012d6984f0d228", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 6, + "row": 25384 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/_backport/shutil.py", + "sha256": "217fc6d8d3eac1e70989b9080e37b4e1baaed31a4791f490d8668674456a3396", + "language": "Python", + "lines": 764, + "truncated": false, + "block": 9, + "row": 12091 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/_backport/sysconfig.py", + "sha256": "0501c595bea9b9b0a5fddbd3d4d8edcc8b61ca5a1f8ca8aca31db7f6cb438345", + "language": "Python", + "lines": 786, + "truncated": false, + "block": 7, + "row": 10181 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/_backport/tarfile.py", + "sha256": "221a7bad745c8db20ac3c08e9bdc1278f57d0111976d217d8065c0327d90f8a5", + "language": "Python", + "lines": 2607, + "truncated": false, + "block": 8, + "row": 952 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/compat.py", + "sha256": "003039eb1880c5aaf7994eaa7a694184d6ecac53e8b174613b8e11cec6c93ea9", + "language": "Python", + "lines": 1120, + "truncated": false, + "block": 9, + "row": 12413 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/database.py", + "sha256": "2a5d18bcf40a73839ca558bb939705ce2c9d335c4e2bc8aa7712c65e06d91d5e", + "language": "Python", + "lines": 1339, + "truncated": false, + "block": 9, + "row": 12500 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/index.py", + "sha256": "4972b3a5008445cb71603329fce2de7b67f42747b5f5984674222832551f5103", + "language": "Python", + "lines": 516, + "truncated": false, + "block": 7, + "row": 8926 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/locators.py", + "sha256": "73d13870311a709fee29bb84e41a805687285a9eabb2e0464e488d0d0ab7cd5e", + "language": "Python", + "lines": 1302, + "truncated": false, + "block": 8, + "row": 361 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/manifest.py", + "sha256": "9d0121626828ade681673c85cf062c5f124046eddfa38124ba7535eb7535ea21", + "language": "Python", + "lines": 393, + "truncated": false, + "block": 7, + "row": 6432 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/markers.py", + "sha256": "e807377027c504445ec621125883979a0f9aa483fc9767ac69f3525f728ccbef", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 6, + "row": 39852 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/metadata.py", + "sha256": "cf628fcb7877b5c0e76fd5ecee702a4393b3d1baa358050598a59c14a468a1d8", + "language": "Python", + "lines": 1056, + "truncated": false, + "block": 9, + "row": 12382 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/resources.py", + "sha256": "d851afd191c5d782978cb2252f447df7597241019c7b0392e2627ee67f895677", + "language": "Python", + "lines": 355, + "truncated": false, + "block": 7, + "row": 3596 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/scripts.py", + "sha256": "fcc023dec32ebf9ea4b8cf05b222165ea6d3d209ae98f19a391fdab4ece7e1ae", + "language": "Python", + "lines": 419, + "truncated": false, + "block": 9, + "row": 11651 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/util.py", + "sha256": "7f68d908fadc2c2b7a2dc9c2d20532f85babeb4b570fcade03b938ac3a47303c", + "language": "Python", + "lines": 1761, + "truncated": false, + "block": 8, + "row": 559 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/version.py", + "sha256": "fe7ec5ea3baf40601c9fbebd13f4876bb7ce71fe44465115ca627f1233d1c06c", + "language": "Python", + "lines": 736, + "truncated": false, + "block": 7, + "row": 9486 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distlib/wheel.py", + "sha256": "bfa0e7c13aa1347c2b11516bf3f61e8935ba1b87ed3ff7afb32c0d82b99d6f6a", + "language": "Python", + "lines": 1018, + "truncated": false, + "block": 9, + "row": 12410 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/distro.py", + "sha256": "c713088766b72a68a9a5e5841f3ca74dd1d3dff8d9334a3ea68b3474058944e3", + "language": "Python", + "lines": 1230, + "truncated": false, + "block": 7, + "row": 11861 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/__init__.py", + "sha256": "058cdc282a9e1228b9db10eba8116bba19e6b66922b875c5c8587e720950f269", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7209 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/_ihatexml.py", + "sha256": "89f3b017ba57aa6c938485dcddba1673deace0c0decea46b455a7b1700d8505b", + "language": "Python", + "lines": 289, + "truncated": false, + "block": 9, + "row": 11605 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/_inputstream.py", + "sha256": "8c4acd012325920b3b32938cf557bf55d2c3272145c1e0232ee855bad673df75", + "language": "Python", + "lines": 918, + "truncated": false, + "block": 9, + "row": 12279 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/_tokenizer.py", + "sha256": "d389a0036b0d4e78aeb65d9fc45bfe7a2e5b9ece2245a3f15575c787f1eb57fe", + "language": "Python", + "lines": 1735, + "truncated": false, + "block": 9, + "row": 12596 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/_trie/__init__.py", + "sha256": "9ea7e03bdd74df6f411152794f8a6c57042d8ddda2272117436f97f1cd58c705", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 9, + "row": 6363 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/_trie/_base.py", + "sha256": "09ac9b63232ba3cb844506236f2dad4de4946ad9d60df5aba1437d37b7adcb9c", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 6, + "row": 25640 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/_trie/py.py", + "sha256": "c179902eb6517f833258dca0d26de1f359bd22784b47b189d34da6208661fbca", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 6, + "row": 30732 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/_utils.py", + "sha256": "0f1f402a7b64b118c54f5bde063ec8dfada97f93a021a4f4ce0970ab8dd19df5", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 9, + "row": 9437 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/constants.py", + "sha256": "2e5fb2ccb53f8dc8f2008fe1e7bce4a99eda416139b79c40e32fe3420a14521c", + "language": "Python", + "lines": 2946, + "truncated": false, + "block": 9, + "row": 12613 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/filters/alphabeticalattributes.py", + "sha256": "95589973624c09c9578bfe6076ebe6773ad1c6d3b95e8f4e3676c70550acca45", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 6, + "row": 25083 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/filters/base.py", + "sha256": "cfe214f590188e9b15b2a995b7b92e582eb78d1d7584332be8256bbee6a8f16d", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 6, + "row": 21655 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/filters/inject_meta_charset.py", + "sha256": "7a00d75041d79801bde74e31cf42ba00b0e0624bd4ac2daad7961455e3655508", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 6, + "row": 35624 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/filters/lint.py", + "sha256": "8e4eaae7ac58d288e261fbe974ff8e6529bd793a9c01d46a842a0f22d7a63d80", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 6, + "row": 37821 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/filters/optionaltags.py", + "sha256": "f25593ef927468138798f81f9aa4c749f3e93cca74d53f3834abb409179dc5c1", + "language": "Python", + "lines": 207, + "truncated": false, + "block": 7, + "row": 3457 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/filters/sanitizer.py", + "sha256": "9baa069a40619060279f69d5e83e2113bf12099e961272bdaca759077b970487", + "language": "Python", + "lines": 916, + "truncated": false, + "block": 9, + "row": 12134 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/filters/whitespace.py", + "sha256": "f1e5aa671778502e33945196ea2c98e9ffb6bae4fca4e09200b737219b7bfede", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 6, + "row": 26984 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/html5parser.py", + "sha256": "6a7afe697adefc899fae4437e5cfeb7ed297c42f34bc909110a7b4e93ab5e470", + "language": "Python", + "lines": 2795, + "truncated": false, + "block": 9, + "row": 12664 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/serializer.py", + "sha256": "fcfa6f719174edcc04ef1afdb8a919aa1e5fe1411a23c96d094db13c9cda4e99", + "language": "Python", + "lines": 409, + "truncated": false, + "block": 9, + "row": 11535 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treeadapters/__init__.py", + "sha256": "034ad8e605c87b86c93a248644efe3fed1619e04413bc4193f33ed3f0e5d173a", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 6, + "row": 23758 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treeadapters/genshi.py", + "sha256": "087dbba40b032a6bb864690052bc2dcbbbb429ab862c26512cf33368edcce6fa", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 6, + "row": 30434 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treeadapters/sax.py", + "sha256": "04a4bcc284139ca8aa79f7c7b310a152a2f8ab6651ff06f97dcf4c277cd00bcb", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 6, + "row": 30736 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treebuilders/__init__.py", + "sha256": "032b12272bcf7e290230cb1356f6b1c2480389e10b0f975f47c149200baaee16", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 6, + "row": 37665 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treebuilders/base.py", + "sha256": "cfea39d6fb7daff9762031b9222a1338a1b36677b8172dff15cfbbcedace8782", + "language": "Python", + "lines": 417, + "truncated": false, + "block": 9, + "row": 11407 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treebuilders/dom.py", + "sha256": "db6c216f40bbd735c8b1a8b999a9a0eaacc11228a070122f683cb802cc376add", + "language": "Python", + "lines": 239, + "truncated": false, + "block": 7, + "row": 1800 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treebuilders/etree.py", + "sha256": "c39645a4a93a6c0c67af00f6fc1ac5e44542eefcf3d0bdcb322f52c6b6dcffcc", + "language": "Python", + "lines": 343, + "truncated": false, + "block": 9, + "row": 11217 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treebuilders/etree_lxml.py", + "sha256": "f60a838ecf88c6c3e10586b9729befd85675299946f371a2baccb69459af2241", + "language": "Python", + "lines": 392, + "truncated": false, + "block": 9, + "row": 11431 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treewalkers/__init__.py", + "sha256": "3813ed7354d4e661b2cb5f100ccc4a132604cf4c3115450d8f9bf4f978266216", + "language": "Python", + "lines": 154, + "truncated": false, + "block": 9, + "row": 9746 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treewalkers/base.py", + "sha256": "a2e88eb2e4b3bc8d0a8337563fc3e5c4869236cf5f6a585b8a29c011cfd42096", + "language": "Python", + "lines": 252, + "truncated": false, + "block": 7, + "row": 53 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treewalkers/dom.py", + "sha256": "107c8547c0fc958367c8353d971fc82a2815251c9e7141ae6b498e8bb1c1ba47", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 6, + "row": 28502 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treewalkers/etree.py", + "sha256": "c68d4be66f55b647e91492b4a459a42d56a386a618562b15667de4f646293e42", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 9, + "row": 9294 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treewalkers/etree_lxml.py", + "sha256": "fdbd0b01558b715bbd59a53ffb0dc3f1fd08452a426e37faebb57edcd45d853c", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 9, + "row": 9963 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/html5lib/treewalkers/genshi.py", + "sha256": "e03d8f1026799f764ddeabb78cc97dc98ec1f358e7400a414125657da22e61b0", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 6, + "row": 33272 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/idna/__init__.py", + "sha256": "f4db7bc69c9eb770e63ab3d41a8a03740c261d966ed6a500cb611a27dde41a24", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 6, + "row": 20450 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/idna/codec.py", + "sha256": "e1154c86a16ab898321812b2978d0046a7200f39030d7654bf297510e0912c51", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 8540 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/idna/compat.py", + "sha256": "83eecf878e67cc82deffbc6fc5d6d379bac766ae26416c48387d6b8cc73ac6bb", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 9, + "row": 6465 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/idna/core.py", + "sha256": "55d1464328a2b7578c294436c7498d5e819386b5e5472a74ef498f0f22d7f588", + "language": "Python", + "lines": 396, + "truncated": false, + "block": 9, + "row": 11104 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/idna/idnadata.py", + "sha256": "725e31f512ddc3564cb4411bbcac00b17f8877701d2233b95371daa0a33a546b", + "language": "Python", + "lines": 2050, + "truncated": false, + "block": 9, + "row": 12426 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/idna/intranges.py", + "sha256": "4d8d65a7164841610fead36a8d9905039860a0c58e8f53819a7506f22853f3b1", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 6, + "row": 30603 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/idna/package_data.py", + "sha256": "931a6d16f799dfbcdb3d298a53b28c100f0f8bb877fac335fa9d9a826d8fa422", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 9, + "row": 6091 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/idna/uts46data.py", + "sha256": "e0264407a65082648d2004c19f657fc5d5bd3c481539700e611cc27901ac2bf1", + "language": "Python", + "lines": 8356, + "truncated": false, + "block": 9, + "row": 12695 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/msgpack/__init__.py", + "sha256": "da027072c4c8680b4233418c8b6ad4fbf63a9082de790baa464ad0db68d200d7", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 6, + "row": 26330 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/msgpack/_version.py", + "sha256": "745474de80029e3e25b0a775467c03ec13cc89523f14cca074e2f54ce044c3f5", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 6, + "row": 20136 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/msgpack/exceptions.py", + "sha256": "7424d67a2f1da64accb100dc8d093be004e5f47b08047d326edf3338f36a3187", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 6, + "row": 26099 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/msgpack/ext.py", + "sha256": "e25df9e98e2c54472f0a56b6761fdc2f9eef87818c8597dade4b961c51d8cfa0", + "language": "Python", + "lines": 193, + "truncated": false, + "block": 6, + "row": 43485 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/msgpack/fallback.py", + "sha256": "469bf52dd7b2f1ff2e7919d0ce70f80112819fd7713363f2c153645c8f0811e1", + "language": "Python", + "lines": 1087, + "truncated": false, + "block": 7, + "row": 11468 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/__about__.py", + "sha256": "8f807b20c312aa95276337187791f95999482d77af0fb666fe7f658ff4d1393c", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6846 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/__init__.py", + "sha256": "e9e9dba795e045f8c18ec23df9b9f4d078c77f94c7db53c330e2a4256f31c3ec", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 6, + "row": 23120 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/_compat.py", + "sha256": "31776c1a9484fd6f99ac7a02f3b6a7748e0b576140c14ec72cbf9e1defc28e15", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7180 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/_structures.py", + "sha256": "a339025fc43c7f6a84d4489cdd8890e1bb8355f833da261ebd8f5eed1db2de26", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 6, + "row": 31920 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/_typing.py", + "sha256": "560034000bec73deca0799c5f3dce8b9d3b208c12c57b165697cd96d8a849330", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 9, + "row": 7766 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/markers.py", + "sha256": "f033a7d5cee867f0f248194ba26ffda38f46ce86d519837cfa4a4afe7b23f284", + "language": "Python", + "lines": 336, + "truncated": false, + "block": 9, + "row": 10715 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/requirements.py", + "sha256": "307a9ffc52a28470b4564381eb6654754c86f289042fdec3e17cbf8cad72152d", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 9, + "row": 9508 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/specifiers.py", + "sha256": "45ac50f892b20aa2394019ba803bdba19d8aea38cb55dfa9c6ad24bd87f6f247", + "language": "Python", + "lines": 864, + "truncated": false, + "block": 9, + "row": 12276 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/tags.py", + "sha256": "04c10bff75b713c9d72bf017016aa695871cb2fa339c52a44c19133d1e3c0c1f", + "language": "Python", + "lines": 866, + "truncated": false, + "block": 9, + "row": 12205 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/utils.py", + "sha256": "e6f531c025584a668d24581deca682069c475d037cf4a22f44bbc2b03cdaa349", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 9, + "row": 9230 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/packaging/version.py", + "sha256": "b7b169b192a60e770c9fa106dbc744bbfe4d05951af7f1d5a221be7ec0e8de87", + "language": "Python", + "lines": 556, + "truncated": false, + "block": 9, + "row": 11551 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/__init__.py", + "sha256": "9a3bbd7a51472c4509db7ad4e59a5d8fc9d139d634563ddba78660bc14ece9b8", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6378 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/build.py", + "sha256": "678f4299115a7d7ecd8e804ca1d8a26f04186bf118cf7134177d5bec3e5656fb", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 9, + "row": 8790 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/check.py", + "sha256": "f0b24bb5f67df7301c578bca2756bea1d331836b042260fb44c360fc4adefb56", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 9, + "row": 9870 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/colorlog.py", + "sha256": "4e4f40b989bf70b17704a4c1a124c9b7d6d1af29f4685a232103b06df5544f14", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 6, + "row": 39054 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/compat.py", + "sha256": "33ee6ce15369f2b8f24fbe9967f89b9cf0f8e03615cd2425c821076b28ed0cfc", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 6, + "row": 24330 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/dirtools.py", + "sha256": "da69009002f4991cff7a56058d12ae7a44c9562a47d734e7e2d6dfd440debfce", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 6, + "row": 26402 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/envbuild.py", + "sha256": "b332941653b9d17d5a8507d7c33e210fd576544fdbcfd30b54f21e89db05a38c", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 6, + "row": 43407 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/in_process/__init__.py", + "sha256": "3325a8022f091dd701bfbc97b96a544950036f1e8b481f6b661ee44c881d03c6", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 9, + "row": 6703 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/in_process/_in_process.py", + "sha256": "5eb28e4d44497626b947b8b78bf390992f3d2c04855c4dc74177d7eb7a990481", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 7, + "row": 1252 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/meta.py", + "sha256": "f269cce650e74f8cd742905396225b4467deb07ee28a81f0a336c3c402cf4bd6", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 6, + "row": 33905 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pep517/wrappers.py", + "sha256": "41865f3759d6a2ae19da4ad8f945f5e092c0c6474dc2e8d88d119feea15cf75e", + "language": "Python", + "lines": 318, + "truncated": false, + "block": 9, + "row": 10969 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pkg_resources/__init__.py", + "sha256": "5e91817ef4bd7da7c0e9b9b9af1eef9f1771b3bcaaca873f367a73280a6427ae", + "language": "Python", + "lines": 3296, + "truncated": false, + "block": 8, + "row": 1047 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pkg_resources/py31compat.py", + "sha256": "09193c7e488f4432ec6e2e6965c2ac1c8fff3db9a1ffde0bf26afd432f406f65", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 6, + "row": 23113 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/progress/__init__.py", + "sha256": "7dc6d0417a399e9d82a10ca1487e57a6b9227302d934b78f477b886a1ce748ed", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 6, + "row": 40970 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/progress/bar.py", + "sha256": "42e0ee54d7265e0a71b4db713b416aef6c4a8a0c4005a566c58181c3827767f1", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 6, + "row": 35330 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/progress/counter.py", + "sha256": "3339f206bbcf5ab3a519ee0c64094651bf6adda3837bafda35878013f54da180", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 6, + "row": 28200 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/progress/spinner.py", + "sha256": "93c25b0d6f784f4f965ee5dfc5920585da0d3d8a778df9e95ea0677d1bf97c6b", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 6, + "row": 28266 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/pyparsing.py", + "sha256": "571e297e104718420c8db652173e8fee68881be000e5516ebba547fde064a0b4", + "language": "Python", + "lines": 5208, + "truncated": true, + "block": 8, + "row": 1188 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/__init__.py", + "sha256": "89bee74630da75b08c39e5f6b0c40b71b5f3cbdf361e82916362c3fe05aac0f3", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 9, + "row": 9256 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/__version__.py", + "sha256": "93827c735c85445cf0196c2537b9a268339c945b5b708b351a59e64f5ed86d74", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 9, + "row": 6614 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/_internal_utils.py", + "sha256": "671dcf9c451c7327ec07e89ed759d95405bca82949cb4831d6a34c13bae04f5f", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 6, + "row": 26191 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/adapters.py", + "sha256": "7be6e6284029355a85772971b8c2497e2687765992ff3856848304ce51ef1ae7", + "language": "Python", + "lines": 533, + "truncated": false, + "block": 7, + "row": 9060 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/api.py", + "sha256": "3e51ccf874f73d0e65cae7e8786995fa7271462ed49d4c86561ece57b07d5d5e", + "language": "Python", + "lines": 161, + "truncated": false, + "block": 6, + "row": 44165 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/auth.py", + "sha256": "38ca092152b244bcbd4c7afdd72f2bc72b19b9c9703c1f8ad57835cc1a265214", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 7, + "row": 3122 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/certs.py", + "sha256": "9d7455abd0ed1a6bffd4061bc234eef54ae001c749bf4e59be435e6a82ce6716", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 6, + "row": 22585 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/compat.py", + "sha256": "2d05ae091e2a5e4eb0efea90a295f2cf458d1d47400f8d24d262a768011fd7e8", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 6, + "row": 32019 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/cookies.py", + "sha256": "63e6ca5fa4ef5b716762513a02ed125ed55559c68d745bee030431c3e1b48932", + "language": "Python", + "lines": 549, + "truncated": false, + "block": 7, + "row": 8067 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/exceptions.py", + "sha256": "77d7c9270f1814107d5731bdaa1bf12ee3b1e9b7b773f0f06dc93e75550401cb", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 9, + "row": 8619 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/help.py", + "sha256": "4893d57285dea3b29f2b803124de5e1554028ebd229bceed5369fbb9b2ec92c5", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 6, + "row": 37628 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/hooks.py", + "sha256": "411786cb2d1b45caf9ae4c02b8e6cd6a46d8b1cec492229e0701b8a877a4af64", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 6, + "row": 24205 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/models.py", + "sha256": "52491a56e535b5cf81298078d5d76cdf9b1a8aca13a5a609d980421591047e13", + "language": "Python", + "lines": 956, + "truncated": false, + "block": 9, + "row": 12316 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/packages.py", + "sha256": "9e32665627d8e1a49cb6e5b73cfe441510b18c4c0c4433ba27f7de1b674a5ac2", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 6, + "row": 23844 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/sessions.py", + "sha256": "06c9d1fb36082e0a05cc9eb2ab84fc86dfe2d0fc303c6540c56c56695e5d7078", + "language": "Python", + "lines": 781, + "truncated": false, + "block": 9, + "row": 12224 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/status_codes.py", + "sha256": "813efd3dbb3f7108c1829f9fbeb520835767d8340edf66c38f84c89e39cc3d27", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 6, + "row": 39293 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/structures.py", + "sha256": "9ac02dafd9aad49c4777e251ca220b7dd165a5b270bef16e3f7adf5104ff4311", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 6, + "row": 35824 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/requests/utils.py", + "sha256": "fcaf4082437a79f3def9afb3819bab5f376ce4f042d02cc39328c0136a024054", + "language": "Python", + "lines": 992, + "truncated": false, + "block": 9, + "row": 12233 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/resolvelib/__init__.py", + "sha256": "41602a344ae3c6a10c2a5f8051c717cf5d1a08a5663be5a65afc5497740e9456", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 9, + "row": 6683 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/resolvelib/compat/collections_abc.py", + "sha256": "bb2f31519f8d0c4c3dd7ab6e8145e6f0783008688c3b47fe45c767a647d77ceb", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6395 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/resolvelib/providers.py", + "sha256": "6dfcc50d977b52a924012ee550cfc77986c0f87ce329f0e595efe99ffefdbe2a", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 9, + "row": 9714 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/resolvelib/reporters.py", + "sha256": "850bef5eeb8404ec8458ef0a0df2ec58a5635f9e5414c014c0ed1864c369cc0c", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 9, + "row": 7401 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/resolvelib/resolvers.py", + "sha256": "3fa6aafbba58e44ef344e6f4cd4516a85207100f4b9b4316b31fdb617cd48370", + "language": "Python", + "lines": 474, + "truncated": false, + "block": 9, + "row": 11660 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/resolvelib/structs.py", + "sha256": "67a9b80a42899561f864829e944b0a35e66a293bf2bb1e21a81373638919ccba", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 9, + "row": 9275 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/six.py", + "sha256": "53867fcafe77e16e423728d8f62f15d4e5d8d928c09f2f32d8be6f0cb8614e13", + "language": "Python", + "lines": 982, + "truncated": false, + "block": 7, + "row": 11102 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/__init__.py", + "sha256": "eaa4a33760490edf3ae1bea7c45a1a9696c22d01e20f68980259d44bd756492c", + "language": "Python", + "lines": 523, + "truncated": false, + "block": 9, + "row": 11592 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/_asyncio.py", + "sha256": "e82e127eff4839461fd7ed2fb88a04e8e19b989ac9cb01f4f98b25af199bc4ac", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 9, + "row": 8421 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/_utils.py", + "sha256": "5b59ee8c7ba6d5ff62e114293928eab10a3dfe642d694b4dce75c09901ec2f6f", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 9, + "row": 9299 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/after.py", + "sha256": "28d222d964fcdebe1ea80dd069730ad735d0ce46cb8151e3e6e45a9d8e8769b3", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7352 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/before.py", + "sha256": "07da405e7ebf27550acf04cbf6716d4693a1360f2ce6f1928b86ea9f1e3e95a0", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 9, + "row": 7203 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/before_sleep.py", + "sha256": "95910c1cd685466742730b3732887810e67dcdea38311c6c91d894b9dbcdbaf6", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7733 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/compat.py", + "sha256": "747a272642651f00f6726a8bad81d85344ddce6d9b9f5fbbe90652b7a3827a6c", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 9, + "row": 6855 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/nap.py", + "sha256": "ed556e74e4e6bafffe0bf5c996f8c67201db57afc0d87973ca6697bbcbe3d5df", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 9, + "row": 7330 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/retry.py", + "sha256": "c6c90b19ad7912c3613cf3a621470a4bb0aa8da440b56c4614d3cd4638f3f545", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 9, + "row": 9638 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/stop.py", + "sha256": "e1c8d27bf60f49ac33ea223e4010cdd3115f13fce52af8e1170c76d599720f61", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 9, + "row": 8187 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/tornadoweb.py", + "sha256": "ab75d95b603d464cb50615106cd1c5eb584cd445d0e7b740ef0c4f9e548ec77b", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7689 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/tenacity/wait.py", + "sha256": "140a087c851235fe4e589613ee7863142d2e3958a31cc05de7a0094722cddb7d", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 9, + "row": 9840 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/toml/__init__.py", + "sha256": "918818cde861531d5c72db2ea6b9a310ac2749d990782e77713c62ee7c50ae4a", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 9, + "row": 6867 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/toml/decoder.py", + "sha256": "75e0cf42aa63f76486ea902dc0b6e0287ac8b25cbb840646f94ea0db2ee1c867", + "language": "Python", + "lines": 1057, + "truncated": false, + "block": 9, + "row": 12381 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/toml/encoder.py", + "sha256": "b417bddff181db52b9d939526cc898b867881971fbd05d96cc083e9487d5a24a", + "language": "Python", + "lines": 304, + "truncated": false, + "block": 9, + "row": 10814 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/toml/ordered.py", + "sha256": "516b791246bdd0859505876f2e06393d79e405c558a478e7c3d4faeeb33ce53f", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 6, + "row": 22134 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/toml/tz.py", + "sha256": "fb9be0f30920fdab67562d939c4bde7b121513b4ff171055afffb65957ced680", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 9, + "row": 6828 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/__init__.py", + "sha256": "8f7cb31c86e65bb092f8829027df8f3d07ff60a3bc10e01ecbfacc5b4511eeeb", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 9, + "row": 8378 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/_collections.py", + "sha256": "469d6657206073f52501ca7a3376add6c909057479278dcd6b0453bd6da0fd76", + "language": "Python", + "lines": 337, + "truncated": false, + "block": 9, + "row": 10930 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/_version.py", + "sha256": "d818e4fdc078f7ddb53d3bdeade5a9f194773612cda02300c874863fe39eb0b9", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 9, + "row": 6211 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/connection.py", + "sha256": "abebdffd333733245b65c167dfe5422990527f4a048468efec115e666ffb930e", + "language": "Python", + "lines": 539, + "truncated": false, + "block": 9, + "row": 11759 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/connectionpool.py", + "sha256": "20aa1eb89658f580189b418ae2af8c5c08725d6d0cfc59ef69b61a36c0c847e1", + "language": "Python", + "lines": 1067, + "truncated": false, + "block": 9, + "row": 12358 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/contrib/_appengine_environ.py", + "sha256": "6c36f2384856d8228b25c42a00a032ac41cdf9a925b321c52aaeaf17c645b269", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 6, + "row": 25310 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/contrib/_securetransport/bindings.py", + "sha256": "791cb5323fb0a60eec47af8e4af9d25788d46e3313e3ae1d2cdfc25b16c8455c", + "language": "Python", + "lines": 519, + "truncated": false, + "block": 9, + "row": 11678 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/contrib/_securetransport/low_level.py", + "sha256": "96021db12c9ca9f0745e6e41889cd719e20a4fbc9b0903053c902091cc0f6b5b", + "language": "Python", + "lines": 396, + "truncated": false, + "block": 9, + "row": 11326 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/contrib/appengine.py", + "sha256": "966f3a5e368e23b6a36e89ec37424b0347249204855a183158a2d6fd89ade2c2", + "language": "Python", + "lines": 314, + "truncated": false, + "block": 9, + "row": 10964 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/contrib/ntlmpool.py", + "sha256": "e88f79875ffbd5fcf19a831236d634801f259f20a856d3ff0e9a851a3d787dd5", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 9, + "row": 9141 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/contrib/pyopenssl.py", + "sha256": "92a9bd497e21ffa87be90c060c188d43b8be92d299ba766ec734d58e3b470eda", + "language": "Python", + "lines": 509, + "truncated": false, + "block": 9, + "row": 11616 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/contrib/securetransport.py", + "sha256": "3041076b762a1bc89f0cf606d203b5d82d6d66ed88f87a86178942e7770714f8", + "language": "Python", + "lines": 920, + "truncated": false, + "block": 9, + "row": 12315 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/contrib/socks.py", + "sha256": "0dc463336974ad0308ca162b37aafeb6756463a6530f11c994cf3fbac0241820", + "language": "Python", + "lines": 216, + "truncated": false, + "block": 9, + "row": 10155 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/exceptions.py", + "sha256": "d0c9e7a372874cd7d745f63beb7f0db9f38f9146fa9973a6f8baa3fb8c76c3c0", + "language": "Python", + "lines": 323, + "truncated": false, + "block": 9, + "row": 10461 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/fields.py", + "sha256": "92f2c30a0fc9987d652e3514118fc52d2f14858ee106f0cfb951136d8f2676b3", + "language": "Python", + "lines": 274, + "truncated": false, + "block": 9, + "row": 10553 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/filepost.py", + "sha256": "e5bfeaaa04475652fbb8bb5d018073061f861e653901f255b7fd8dd174b73de6", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 9, + "row": 8192 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/packages/__init__.py", + "sha256": "87804b843e2d2da071d5a75a0ed2977eea6c82a634c162d76ff7f5ff256557a0", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 6, + "row": 20722 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/packages/backports/makefile.py", + "sha256": "9dbcedde2d1a80f54fd3b8eaaa08e16988cc9ae022fd6e44d04cb0662bd53bc1", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 9, + "row": 7451 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/packages/six.py", + "sha256": "69dc78cfe78cfc3d15beed0822a573140090feec7d97ae32ec391211f6f1083b", + "language": "Python", + "lines": 1021, + "truncated": false, + "block": 7, + "row": 10946 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/packages/ssl_match_hostname/__init__.py", + "sha256": "ce9a5ecdd1107691ac61eac8ea657a31f518cb8f79255e2670e582fc681b9635", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6878 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/packages/ssl_match_hostname/_implementation.py", + "sha256": "e9d67eab4ef883b5e1b09dbb3050a091cb7c895359077b0c66f2a17fe294572d", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 9, + "row": 9731 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/poolmanager.py", + "sha256": "c21ce55fa51312038330e0b2d190cc50e351042cf9c3220cf19f68a57018f8b9", + "language": "Python", + "lines": 536, + "truncated": false, + "block": 9, + "row": 11816 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/request.py", + "sha256": "645488a97d02e968b38b179c0a1677fe8932bbb044bf4959bb5553d2cea1e123", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 9, + "row": 9825 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/response.py", + "sha256": "846846061ed3904921fc8420e42d56ff1b8f36b8082afe415173f213eab42ee1", + "language": "Python", + "lines": 821, + "truncated": false, + "block": 9, + "row": 12171 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/__init__.py", + "sha256": "2449929a6aaa2f26b0f0fe75814226661f06c20f62d7349ef83a2a022b67da77", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 9, + "row": 7205 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/connection.py", + "sha256": "fc8f99a05e7cc572cb8e8f90e4819a26b331cb6216fdec48f0af4ef69abba29d", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 9, + "row": 9431 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/proxy.py", + "sha256": "1468a90049ef66d7b295d5cd8dc7b80c407b633c14f9ae657a9f32e52d2a1d08", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 9, + "row": 7581 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/queue.py", + "sha256": "9d1817f3f797fbf564bf1a17d3de905a8cfc3ecd101d4004c482c263fecf9dc3", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 9, + "row": 6655 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/request.py", + "sha256": "367cda10a4353dabb0e4c14c57a1e68043072137f402e6bd7d0bb38b6b99cc67", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 9, + "row": 9121 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/response.py", + "sha256": "189a60dc4822f6a6895d1c01879c2ff8c36e4566a7e4122ee34a117a8c563f6f", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 9, + "row": 8816 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/retry.py", + "sha256": "b3764d2973bafeddb7650320f3396edb43cc4aaada4f8f79f92fe6118ff5f5a9", + "language": "Python", + "lines": 602, + "truncated": false, + "block": 9, + "row": 11925 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/ssl_.py", + "sha256": "74a707facaa247f1125aa28fd4f27a4940144afa82f9f90c406ad3a2457834c6", + "language": "Python", + "lines": 474, + "truncated": false, + "block": 9, + "row": 11575 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/ssltransport.py", + "sha256": "bce3823d19fe74e0d4676aad3027d2b5bd099a382b80968a2ea27daaf2ae705b", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 9, + "row": 10120 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/timeout.py", + "sha256": "4126c150d381f7287a0270e7eb54ab2d0d21839a33d08f7eb97106f75009b888", + "language": "Python", + "lines": 268, + "truncated": false, + "block": 9, + "row": 10824 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/url.py", + "sha256": "28fff26870344c5140b1048899cfc53873be5aadcf3477ff6ca39b29cae0754e", + "language": "Python", + "lines": 430, + "truncated": false, + "block": 9, + "row": 11335 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/urllib3/util/wait.py", + "sha256": "dcc50a452014243076b60728eea454b245b4cd7180598bd1444e10d7feb194bb", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 9, + "row": 9619 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/webencodings/__init__.py", + "sha256": "a8e04922e3f2ff8072607e96fdb360245faa610d83a14f9d2ac0eee724560978", + "language": "Python", + "lines": 342, + "truncated": false, + "block": 7, + "row": 3452 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/webencodings/labels.py", + "sha256": "e003bf2b14dd76a1adacbf67b3b9003e36f409c37ac6c088c5b2b7ec763daf71", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 7, + "row": 1864 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/webencodings/mklabels.py", + "sha256": "19821ecb09e968b9cfd064a273c2c55a0774515bcefe5d4d73a62817ef3b47fe", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 6, + "row": 27690 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/webencodings/tests.py", + "sha256": "3ad18bca384d6357ef916d46bcb27f155f59a2a0bd027ca3afbab79314dbccdb", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 6, + "row": 44262 + }, + { + "path": "venv/lib/python3.8/site-packages/pip/_vendor/webencodings/x_user_defined.py", + "sha256": "c8ea9649d9a9cad19f52087f67a258803361a1cf81007cb279e4f5e45af8dad3", + "language": "Python", + "lines": 325, + "truncated": false, + "block": 6, + "row": 39647 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/__init__.py", + "sha256": "3f73cd377fe6f0926b60ca7e8be4aafb7ae12b9bee562aaa8e7d545ca1df7bb4", + "language": "Python", + "lines": 3288, + "truncated": false, + "block": 8, + "row": 1046 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/appdirs.py", + "sha256": "3227af504bafde5fe6408487e52174b210e4fc13611c7cd88803eb4f72133782", + "language": "Python", + "lines": 608, + "truncated": false, + "block": 7, + "row": 9759 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/__about__.py", + "sha256": "3cd32c6999f851c087cae6e044e1f56e5e8296e76e3e3239905ad2a7f660925a", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6853 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/__init__.py", + "sha256": "e9e9dba795e045f8c18ec23df9b9f4d078c77f94c7db53c330e2a4256f31c3ec", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 6, + "row": 23120 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/_compat.py", + "sha256": "31776c1a9484fd6f99ac7a02f3b6a7748e0b576140c14ec72cbf9e1defc28e15", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7180 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/_structures.py", + "sha256": "a339025fc43c7f6a84d4489cdd8890e1bb8355f833da261ebd8f5eed1db2de26", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 6, + "row": 31920 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/_typing.py", + "sha256": "c79f44850e7b4cc4fe9134722d9576e4766f6061b06ee713a3a88a87f3b4b4cc", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 6, + "row": 30926 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/markers.py", + "sha256": "6129ed4243272b2c35fc51baa1134d9c6c4b2fa6c0c5c1973adb8513e6134b79", + "language": "Python", + "lines": 328, + "truncated": false, + "block": 9, + "row": 10730 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/requirements.py", + "sha256": "47c2b81f8c57fe20f82efa46c35537a2eb8f6c637ec33b05803edbae100cef56", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 9434 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/specifiers.py", + "sha256": "b98a7d975dc5d0b7249d2e9de0deb4cad88180598884a89d78eabd027b314dca", + "language": "Python", + "lines": 863, + "truncated": false, + "block": 9, + "row": 12268 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/tags.py", + "sha256": "34a312dfb668fe75ab67182c0facdb5ec5e073d79d9fd9b5eb470188b98725d1", + "language": "Python", + "lines": 751, + "truncated": false, + "block": 9, + "row": 12045 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/utils.py", + "sha256": "452865be78ced82b58483f2eae2df67eb30c14c4e607ede286cab5fa08732c4c", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7756 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/version.py", + "sha256": "0a76e6f8e3bd0ffa9df194c5c7315c8d26af7b14981599b279aa0fbccb2380f7", + "language": "Python", + "lines": 535, + "truncated": false, + "block": 9, + "row": 11508 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/_vendor/pyparsing.py", + "sha256": "49f6ec6e2bf7e4535e0e91ba2a4f3b34875cb96e88e539dea8680eba624db20e", + "language": "Python", + "lines": 4945, + "truncated": true, + "block": 8, + "row": 1183 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/extern/__init__.py", + "sha256": "dcf8b1693f53cf3778368c95e8256119ded2ffd67e539caf31601fb592af0ba9", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 6, + "row": 33455 + }, + { + "path": "venv/lib/python3.8/site-packages/pkg_resources/tests/data/my-test-package-source/setup.py", + "sha256": "32b7b39779eac646248c26292319a3861838011f21822e1065d1189a4f88ed1f", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 9, + "row": 6360 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/__init__.py", + "sha256": "d1cdb7d8b47238b19d2fe6309a093cb8cb9bc7b236d70fa2c495a24f48d02be7", + "language": "Python", + "lines": 241, + "truncated": false, + "block": 9, + "row": 10327 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_deprecation_warning.py", + "sha256": "8d4f7e76d7efe9c2a6b5024e5cdf273f59a6ee038dc3990a12d88fb5bc276722", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 6, + "row": 21280 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/__init__.py", + "sha256": "969400a6147feee8560b67db484a6ce096bd5b86307b337f217fcb244b779215", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 6, + "row": 21446 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/_msvccompiler.py", + "sha256": "8d1d0933903524c9d9eb130389c4338575a05d3557b3595601e51ec42d73d7df", + "language": "Python", + "lines": 561, + "truncated": false, + "block": 7, + "row": 8841 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/archive_util.py", + "sha256": "a96fae886c187b14ef2b97be8927a5ff7d43b21c7e0aa4da9cd3caeac9f07fdf", + "language": "Python", + "lines": 256, + "truncated": false, + "block": 7, + "row": 1417 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/bcppcompiler.py", + "sha256": "3890d5a425265fa1fcbffee5575ce27d5d5f731f760abd9d862521ebdf3d5092", + "language": "Python", + "lines": 393, + "truncated": false, + "block": 7, + "row": 6468 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/ccompiler.py", + "sha256": "1b6b67f50df343455435f5b52ccfa7ae72edffa3a1b6252e9ee802bfce43d4f4", + "language": "Python", + "lines": 1123, + "truncated": false, + "block": 8, + "row": 154 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/cmd.py", + "sha256": "79ca3a2c0194b686cbb8f69fba19a02a09304512ff598f0a27861e0c21e9725b", + "language": "Python", + "lines": 403, + "truncated": false, + "block": 7, + "row": 7944 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/__init__.py", + "sha256": "d9303eae5343973788f9cb1b5875c58c60fcb8e62a00b31fc963a14f8f670ba8", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 6, + "row": 24431 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/bdist.py", + "sha256": "db3e1eb9d465fe7ee6de51bd95e2f4218a9eb386ec9bc7347f17d9ba269f8cc8", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 6, + "row": 42482 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/bdist_dumb.py", + "sha256": "053babf63708a69c8fecf89abe37ec93b623125aafc5e60eda7a54c8f3ce7a47", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 6, + "row": 41093 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/bdist_msi.py", + "sha256": "11515060dfd7f84c5e78ff2099d57d25c20db2e506b0b254cfd69f314d11b7c7", + "language": "Python", + "lines": 749, + "truncated": false, + "block": 7, + "row": 11243 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/bdist_rpm.py", + "sha256": "8233b0db61a10d26dcab46ddab6e5c4dbfa7e875969b46d284b41a77f9a42789", + "language": "Python", + "lines": 579, + "truncated": false, + "block": 7, + "row": 9055 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/bdist_wininst.py", + "sha256": "88695a23e55f1251ce9de79ccca1d69d23796b5d3eec831c25a5ee47599d4b77", + "language": "Python", + "lines": 377, + "truncated": false, + "block": 7, + "row": 7036 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/build.py", + "sha256": "d753724765005336a5ae44d9da98740401c55850b68ed4ac37b808685f8d0b4f", + "language": "Python", + "lines": 157, + "truncated": false, + "block": 6, + "row": 42908 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/build_clib.py", + "sha256": "6e05531e1dbc78b400d86930ebc6a602977f8fba90057e0c4c8fb34ef00afc9e", + "language": "Python", + "lines": 209, + "truncated": false, + "block": 7, + "row": 765 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/build_ext.py", + "sha256": "63f4986ddf121dca6034f7efde27d59e26658d8b3570b00595e0528b6fcedc26", + "language": "Python", + "lines": 755, + "truncated": false, + "block": 9, + "row": 12261 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/build_py.py", + "sha256": "4bf365c3885913c3e7220a97e4e14c766b7e19298e84f410e1fda3af5b819e85", + "language": "Python", + "lines": 416, + "truncated": false, + "block": 7, + "row": 7558 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/build_scripts.py", + "sha256": "68ac9c2493f1dcb7d9d5cbd981225ac670f62e7bd1339589fbcc64a5d81c2ec2", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 6, + "row": 43752 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/check.py", + "sha256": "e6a0ed23be5c719837b0022d41679a22ef32dc5477d783b8aebf529b3e07b04a", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 6, + "row": 42643 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/clean.py", + "sha256": "d930ade3baeee2165933445f55f5188f96dba6272918b3f8421c398c1b6fa7d9", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 6, + "row": 35068 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/config.py", + "sha256": "d9a4e3c30dcfc23301f3e6626c27b83fb07ea86d61335827feb257632c51cfa7", + "language": "Python", + "lines": 344, + "truncated": false, + "block": 7, + "row": 5385 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/install.py", + "sha256": "a0e336ac3ee5fd28250113550e68999fcbba0c07e2757445ff2139412df6f01e", + "language": "Python", + "lines": 677, + "truncated": false, + "block": 9, + "row": 12156 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/install_data.py", + "sha256": "62118e0308778093ea17b7a6e57034ae6a51e36cf56cb87cd28a049730f252f9", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 6, + "row": 35209 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/install_egg_info.py", + "sha256": "d245b496254c79a7648d7d197117cca6d2857a7d3b1b0ea0cb0d551d3e4a2307", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 6, + "row": 34467 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/install_headers.py", + "sha256": "5d0ea27646c80dfaf59635c23b39ee55432f385a47067e9c2b45b3f6020cd9be", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 6, + "row": 27625 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/install_lib.py", + "sha256": "f40a1f47e30ef6502d8f0c2eba40a9b5ea4e68910a3195b65478b2479854ec70", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 7, + "row": 1196 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/install_scripts.py", + "sha256": "fc22d4790c06251718da48a4edaccf327e4876d0c2ae359d52f675921946e9c9", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 6, + "row": 31905 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/py37compat.py", + "sha256": "ab346186f4e286ac7f3d966dd996040b18755f73a3db9e55a9ab737a560500ac", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 9, + "row": 6803 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/register.py", + "sha256": "da36aaf7debcaedda9b91543071d476cd897bf6eee3a4f22744ff894f7ffdd53", + "language": "Python", + "lines": 304, + "truncated": false, + "block": 7, + "row": 4361 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/sdist.py", + "sha256": "aa8b498c03b3ca1263ab6fa80c89a3345aceb5a4a778414325307eb04935c275", + "language": "Python", + "lines": 494, + "truncated": false, + "block": 7, + "row": 8271 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/command/upload.py", + "sha256": "04b3b5c3b79202ab028c22d7b5ffc24554a3c05d569b2381c8654635d710f286", + "language": "Python", + "lines": 214, + "truncated": false, + "block": 9, + "row": 10298 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/config.py", + "sha256": "76d1e06e5c7d2617f2acac75f89ec9971c3f7fbb3c65b3c54228b65163136696", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 6, + "row": 40903 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/core.py", + "sha256": "8db74e92938ad3dc62fb9eaf861c2f9f77d87612dbe4324ef2adcad5f9d0cf44", + "language": "Python", + "lines": 234, + "truncated": false, + "block": 7, + "row": 1746 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/cygwinccompiler.py", + "sha256": "f54e0902eb14ce5006265d18e674e83e443795dcec780b62c9ee37e26c09d28c", + "language": "Python", + "lines": 403, + "truncated": false, + "block": 7, + "row": 7206 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/debug.py", + "sha256": "37a32b4c0a8aea5f52564ead5b0791d74f0f33c3a5eea3657f257e9c770b86c6", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 6, + "row": 20867 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/dep_util.py", + "sha256": "1ae47d230fe3cd9464c9e989e475fcac1ff0446c642017019b5aa1e78afbce19", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 6, + "row": 37360 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/dir_util.py", + "sha256": "5308413944dc57ae464f071ee123ee4d747c67cab72d811c9adb6a7066f46d8a", + "language": "Python", + "lines": 210, + "truncated": false, + "block": 7, + "row": 461 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/dist.py", + "sha256": "062b9fe9c6bcba215f31271116c6142ad6f99de30fb712b146d5e7e74ff57f75", + "language": "Python", + "lines": 1257, + "truncated": false, + "block": 8, + "row": 279 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/errors.py", + "sha256": "62bead29919dcc1a0d8b9def06d8aad1427ffd7d390a6c5275026a3966b0e926", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 6, + "row": 37627 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/extension.py", + "sha256": "6d36f74340a87af18a62fe5d5f596cfbe2e7f2d941d3e5043ac8bd070ce567eb", + "language": "Python", + "lines": 240, + "truncated": false, + "block": 7, + "row": 3386 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/fancy_getopt.py", + "sha256": "38fc69d82c478b5629fddd43f09c56e147aaf5f0bbd6d7a040569a7e1e7c1865", + "language": "Python", + "lines": 457, + "truncated": false, + "block": 7, + "row": 7818 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/file_util.py", + "sha256": "d2152a7c8b4dff1d83562851d0c1dd03828231508e3bc568072685a7f6ba3038", + "language": "Python", + "lines": 238, + "truncated": false, + "block": 7, + "row": 901 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/filelist.py", + "sha256": "f1b471873a7616c6a81d3ed3b8a0f842372e87f07d3b0ff14edfe1b5926f3764", + "language": "Python", + "lines": 327, + "truncated": false, + "block": 7, + "row": 5184 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/log.py", + "sha256": "8560667540b62bddbb41c56fdd110c5b71cc3dc97171c3d09e0c4b4ae517425d", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 6, + "row": 31675 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/msvc9compiler.py", + "sha256": "5fadb707dda0d2ff00dc110cf6aa517f7f7a00477f85f8e47c35154cabb485c1", + "language": "Python", + "lines": 788, + "truncated": false, + "block": 7, + "row": 10702 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/msvccompiler.py", + "sha256": "aabb802de191abcf828ed8c4dad2d0f16dba42772171879d5b31667bc0316784", + "language": "Python", + "lines": 643, + "truncated": false, + "block": 7, + "row": 9522 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/py35compat.py", + "sha256": "fac935bc122c3a01fe0286e32186cafce12374917fe78525fc3d44884f5733f7", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 6, + "row": 22539 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/py38compat.py", + "sha256": "208edd741c4e8a30bbb8d378cffe3a1d8523c184c960c3622c9a064e8ae6666d", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 6, + "row": 21244 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/spawn.py", + "sha256": "3a64a7ab712a762b6af09e6fe715cc9994921e32e7e1ab5b59265b2fae49ba50", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 9348 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/sysconfig.py", + "sha256": "e73e79314ee05de71e2ff1bd14ae9ec7ed8ebdd7885c945925a7ebb6d84971f5", + "language": "Python", + "lines": 573, + "truncated": false, + "block": 7, + "row": 9005 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/text_file.py", + "sha256": "3ecb8025e59d289a0b495ffa37a229079fb43daf382b32d4b9c24c1516b3c372", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 7, + "row": 4938 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/unixccompiler.py", + "sha256": "13ae5e7428582e81d8f308b83b116eff02adde125edc6c9217abf9d46fd9ccbd", + "language": "Python", + "lines": 328, + "truncated": false, + "block": 7, + "row": 6373 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/util.py", + "sha256": "5a5cfd9e80a1263cde9bd99f80ebbe29a37cb2807868d8517dee151a5b5777cc", + "language": "Python", + "lines": 561, + "truncated": false, + "block": 9, + "row": 11894 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/version.py", + "sha256": "f0da203fa34f3d0a69dc450c65c4fd73310789af9e86a3e8f2ca68fdeec08145", + "language": "Python", + "lines": 347, + "truncated": false, + "block": 7, + "row": 4964 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_distutils/versionpredicate.py", + "sha256": "671a4403e4d0bfcf2651673a85eb543b8a92a80dac6bb8a98d9dd010ae5ebc39", + "language": "Python", + "lines": 166, + "truncated": false, + "block": 6, + "row": 41607 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_imp.py", + "sha256": "1e617dd486e2b517ec0f9cfe838ff099cb87f916a1c8838d6cf82208e160b730", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 6, + "row": 33591 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/more_itertools/__init__.py", + "sha256": "0bbb177df1d35ccdcffa268b3cf7ea7e60e8c4e7e540c24b70cede77da778da9", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 9, + "row": 6340 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/more_itertools/more.py", + "sha256": "0e565af2fe898a15707d0e731e274e03ec43134a2b710214cb156709a5280ca1", + "language": "Python", + "lines": 3825, + "truncated": false, + "block": 9, + "row": 12666 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/more_itertools/recipes.py", + "sha256": "524364aec672aa2c202c700d0539af3210af68d4af48d621c8ea73fc9739e436", + "language": "Python", + "lines": 620, + "truncated": false, + "block": 9, + "row": 11571 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/ordered_set.py", + "sha256": "75b68272cdbb77237d827316185e6703f06b567e90f8dae329826957dfdf801b", + "language": "Python", + "lines": 488, + "truncated": false, + "block": 7, + "row": 6594 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/__about__.py", + "sha256": "3cd32c6999f851c087cae6e044e1f56e5e8296e76e3e3239905ad2a7f660925a", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6853 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/__init__.py", + "sha256": "e9e9dba795e045f8c18ec23df9b9f4d078c77f94c7db53c330e2a4256f31c3ec", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 6, + "row": 23120 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/_compat.py", + "sha256": "31776c1a9484fd6f99ac7a02f3b6a7748e0b576140c14ec72cbf9e1defc28e15", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 9, + "row": 7180 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/_structures.py", + "sha256": "a339025fc43c7f6a84d4489cdd8890e1bb8355f833da261ebd8f5eed1db2de26", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 6, + "row": 31920 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/_typing.py", + "sha256": "c79f44850e7b4cc4fe9134722d9576e4766f6061b06ee713a3a88a87f3b4b4cc", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 6, + "row": 30926 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/markers.py", + "sha256": "0420b165bb7cc60cac1fcbf9a6a6cb91db509d164720690942a94d0467a4e274", + "language": "Python", + "lines": 328, + "truncated": false, + "block": 9, + "row": 10726 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/requirements.py", + "sha256": "547c9d65d93c9b7a85c517a898dc0aafbd5c9a98da9ed115ff13a1904cb220d2", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 9, + "row": 9427 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/specifiers.py", + "sha256": "b98a7d975dc5d0b7249d2e9de0deb4cad88180598884a89d78eabd027b314dca", + "language": "Python", + "lines": 863, + "truncated": false, + "block": 9, + "row": 12268 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/tags.py", + "sha256": "34a312dfb668fe75ab67182c0facdb5ec5e073d79d9fd9b5eb470188b98725d1", + "language": "Python", + "lines": 751, + "truncated": false, + "block": 9, + "row": 12045 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/utils.py", + "sha256": "452865be78ced82b58483f2eae2df67eb30c14c4e607ede286cab5fa08732c4c", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 9, + "row": 7756 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/packaging/version.py", + "sha256": "0a76e6f8e3bd0ffa9df194c5c7315c8d26af7b14981599b279aa0fbccb2380f7", + "language": "Python", + "lines": 535, + "truncated": false, + "block": 9, + "row": 11508 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/_vendor/pyparsing.py", + "sha256": "49f6ec6e2bf7e4535e0e91ba2a4f3b34875cb96e88e539dea8680eba624db20e", + "language": "Python", + "lines": 4945, + "truncated": true, + "block": 8, + "row": 1183 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/archive_util.py", + "sha256": "99a2436e8cd16c37923f0e77553d1c6ff212dd6d00a7bde5251f2d5fc4590f1d", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 6, + "row": 45082 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/build_meta.py", + "sha256": "c7b148d543ca08ac41052a295e871f1839c96bdf2b40ef1ab4a5d2c09b5d89df", + "language": "Python", + "lines": 281, + "truncated": false, + "block": 7, + "row": 3193 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/__init__.py", + "sha256": "7bef1324e8a451edd2b747f0d9bda9f6ee440dd4b1979cc75012492a27db710f", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 6, + "row": 21273 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/alias.py", + "sha256": "d6c2d0c5970d87a7434290e69b81bb506193a25f379d8d4d4cf98d05b9b6b222", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 6, + "row": 33539 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/bdist_egg.py", + "sha256": "faea6207a7c5b66f1c412423d4b4435691b5f93d78dc3b170af5747e1d37bbb5", + "language": "Python", + "lines": 456, + "truncated": false, + "block": 7, + "row": 7313 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/bdist_rpm.py", + "sha256": "ff863bb55033bb5cc4b8373cb6945d13fb32df3493de1dcb3d3b738a8a2ce429", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 6, + "row": 24984 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/build_clib.py", + "sha256": "7d61d2146924d7454275d0560accef361a306c6f59f42657563436b92227a0eb", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 6, + "row": 39909 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/build_ext.py", + "sha256": "688fea9caf66f2550b6434ba5ccbffa768f6a487a155b49aadbe0f2470c0eddc", + "language": "Python", + "lines": 322, + "truncated": false, + "block": 9, + "row": 11241 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/build_py.py", + "sha256": "7cfecae97f154bdd83fbf8472b98ccf7dc27a928d342125cc79fbc5a9ef8301f", + "language": "Python", + "lines": 252, + "truncated": false, + "block": 9, + "row": 10621 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/develop.py", + "sha256": "074a79761ed5ad231d11f85d504fc02655a4d94c407ac38e635e02015e7f0c40", + "language": "Python", + "lines": 216, + "truncated": false, + "block": 9, + "row": 10429 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/dist_info.py", + "sha256": "e6dea439fadd8002d3f8fde882cb3a3c5f64f8b7b27acb9ec9cba4ddd5326672", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 6, + "row": 25324 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/easy_install.py", + "sha256": "d77069534616d1434963e9353925423e3ec49c26747a9e5f6424b4b8ab99d266", + "language": "Python", + "lines": 2290, + "truncated": false, + "block": 9, + "row": 12620 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/egg_info.py", + "sha256": "b1ef85858235b1933329dea59dd57ffaf364277d615f81d8e1970c52eef597d9", + "language": "Python", + "lines": 734, + "truncated": false, + "block": 7, + "row": 9890 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/install.py", + "sha256": "f1da0cc5e4040e82b811ca3498ed969575f3ce9f509ec18943b67bc969193c6f", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 6, + "row": 40626 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/install_egg_info.py", + "sha256": "6cc81e21e4625f34380c018f575df6f24723c108c78ce594e059e00162d5efc4", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 6, + "row": 32819 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/install_lib.py", + "sha256": "533e3631cb321d9023ac1e9cc3d13b073d31b1a4dbcf19ccd4f23d0818623ed1", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 6, + "row": 38425 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/install_scripts.py", + "sha256": "a348cdfdec7bc98624f16e5c97299314e5f090530acd6f6aff377d36971ec7b3", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 6, + "row": 34426 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/py36compat.py", + "sha256": "ef22d6cd08f5efd127c77a49f15d5c0c30b378b30531df5725794afa2653ab96", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 6, + "row": 41178 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/register.py", + "sha256": "924dc3c5709be655d3bea9e17f0c7683aabb8b06d49a04f25d409a068a013949", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 6, + "row": 22607 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/rotate.py", + "sha256": "4afb103dab1ecc8a233e3bcc9df92ace1f0fd14d2d0a3d1d69ccc5f2e7373503", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 6, + "row": 32501 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/saveopts.py", + "sha256": "cdaed00817108a628aae259ca0271b8713e3533df481207be33b932f8ef1a4fe", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 6, + "row": 23648 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/sdist.py", + "sha256": "a44305d06315b9ace734ae8615a98ae064971bdfea79fd2273ccfb8c4b0f98aa", + "language": "Python", + "lines": 189, + "truncated": false, + "block": 6, + "row": 43286 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/setopt.py", + "sha256": "2e272a957a1c90ba8138760f36fd49d37d87c6804a0f81ce1c1d75aa6fedf81b", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 9, + "row": 9484 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/test.py", + "sha256": "f8ed31ac7f1a7492935c2f1d4992ff6c0876d5da2618cfb3081e5144d7e774d7", + "language": "Python", + "lines": 274, + "truncated": false, + "block": 9, + "row": 10717 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/upload.py", + "sha256": "5d3dd81557d83c0980e6a8468347ae96e53df1fb714545be3f329c38330bc54b", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 6, + "row": 22565 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/command/upload_docs.py", + "sha256": "6dae643b279d0ffbbadb07a29ebc6aaa7be9b90bc122e6a65de8491bab40bced", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 6, + "row": 45295 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/config.py", + "sha256": "6bf4bd76a6f9975f2f96a7b906b537d37a99e9e1686a00b93d98d8c11617fe6c", + "language": "Python", + "lines": 715, + "truncated": false, + "block": 9, + "row": 11969 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/dep_util.py", + "sha256": "043c75064ccd427b6f001e1a972a476d6e54541ce3aad86cd34d0fad42f866a7", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 6, + "row": 25264 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/depends.py", + "sha256": "8877d974b7650aed81965485f5b460ecd534a2a6cf58c1fc9639b806ec100d8d", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 6, + "row": 42326 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/dist.py", + "sha256": "41565bdb2a608535c5bb3ce9ef9dcadf81f229410058232f01e6120682db0e59", + "language": "Python", + "lines": 1115, + "truncated": false, + "block": 9, + "row": 12427 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/errors.py", + "sha256": "31539cbf7f351cd49a8c3804516cce43827a0790470813128c77da59c130035a", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 6, + "row": 22917 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/extension.py", + "sha256": "34c338e978cd7557a559e99cd31f02c95280e4ab3a666df14d6480d924bac593", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 6, + "row": 30257 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/extern/__init__.py", + "sha256": "1e17fd5bbdd6022b70f5375125f0c86fa6058e62b9e8217ad5a7ddb35320d076", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 6, + "row": 33658 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/glob.py", + "sha256": "d686636df8c01d25db81d852b91e98194f232a86fd2fc36d126058a9c3d32d89", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 6, + "row": 41011 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/installer.py", + "sha256": "8db85bed9564355fdb4943207e72dc670d081ebe911059ca178a3bff526ac66d", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 6, + "row": 37594 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/launch.py", + "sha256": "4f23d3f887354f612762f18edba81f3513f8cac065ae1a5b4634315ac88ee35e", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 6, + "row": 24503 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/lib2to3_ex.py", + "sha256": "60a03b0a6748256c32d3ecae640c548283476d71664f8a79de235a7567414029", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 9, + "row": 8114 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/monkey.py", + "sha256": "d1edc77552971cbe35e4eee7a7e014aa11055cf3ee0dd24a6c8e3b72143f0c4e", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 6, + "row": 41798 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/msvc.py", + "sha256": "dcb2edf77f1ee8e47bc163f322f090bbb2c25994882aaa0a57ac37afc8d5de46", + "language": "Python", + "lines": 1805, + "truncated": false, + "block": 8, + "row": 284 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/namespaces.py", + "sha256": "3cca8654f5cf610823513bc483d6c671c440908383ad0e8d9ac0e0fdfc04af02", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 6, + "row": 36128 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/package_index.py", + "sha256": "0bf1529ca9bb599334c1eca9359353652f62f48ebdc2d97707313ea917778d20", + "language": "Python", + "lines": 1128, + "truncated": false, + "block": 9, + "row": 12398 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/py34compat.py", + "sha256": "29839deb26d1c63056f0d266603f2dfd4cb2566caca69157a87a452ddb251975", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 6, + "row": 21409 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/sandbox.py", + "sha256": "222af199e0876e5d421d3ee910f810ead4f1f7053ce789fe776a7cd12bbcb797", + "language": "Python", + "lines": 496, + "truncated": false, + "block": 9, + "row": 11351 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/ssl_support.py", + "sha256": "08f53fe354bec7657aa8eb8436bdb042c392c651ef240a173b1b803dbaf18e93", + "language": "Python", + "lines": 266, + "truncated": false, + "block": 9, + "row": 10548 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/unicode_utils.py", + "sha256": "68e385a38246c00b2206db46603b2a152ed8a9641e6768fa0d6882b9cb51ff4d", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 6, + "row": 25216 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/version.py", + "sha256": "a20fdcb9941bd1023aba429915f6563e5af51e02413cf9f6bceda6fdb23d6531", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 6, + "row": 20893 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/wheel.py", + "sha256": "d0ff2d4a4d74e6e17f51bfb7d0dd875365f6bfb30a0d2763a5e4254515b74a42", + "language": "Python", + "lines": 213, + "truncated": false, + "block": 7, + "row": 1075 + }, + { + "path": "venv/lib/python3.8/site-packages/setuptools/windows_support.py", + "sha256": "e46adfa923f6f9d2c6268653ab683a7422a4c90c716b69f92108979490a86041", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 6, + "row": 23976 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/__init__.py", + "sha256": "80469c93aab7be06e6ae07a7edc3b77c23afeaf145e21876298ca3ddf2a4e782", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 6, + "row": 20169 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/__main__.py", + "sha256": "945f982cee217509a85ae87879665df182f553de5149d9bbeac34b0576b4be31", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 6, + "row": 22316 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/bdist_wheel.py", + "sha256": "daf7efde0fdbf01bd9e43a3d6e92c405dbbd75011cbe8310d5f957a4a6052435", + "language": "Python", + "lines": 492, + "truncated": false, + "block": 7, + "row": 8297 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/cli/__init__.py", + "sha256": "1964a8194a5169b4dff1b93716c3533eb73916cafc60ebf6757e79898d96ede6", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 6, + "row": 34334 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/cli/convert.py", + "sha256": "ec5e2f8f6dc0d8e8210c35a7f605f657efd37973336b56b99c87a39851845093", + "language": "Python", + "lines": 269, + "truncated": false, + "block": 7, + "row": 2378 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/cli/pack.py", + "sha256": "4be275888cb518f0d34c3767fbf4b0c466bb37bdbd878899348d75103142a9f0", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 6, + "row": 36502 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/cli/unpack.py", + "sha256": "d155b34fb53fc727a74cfc0455abf1aaf75e7bddc63ef0051e747752ef756917", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 6, + "row": 23726 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/macosx_libfile.py", + "sha256": "eef11c1a5976dcaddf88b8edb47d229ed8f14743482bc3babe29a3459ec10a87", + "language": "Python", + "lines": 428, + "truncated": false, + "block": 7, + "row": 6986 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/metadata.py", + "sha256": "6f790f8599f6c360fdc1e9e096d5f99c621943711150e43953e2b9bc728f75e8", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 6, + "row": 39744 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/pkginfo.py", + "sha256": "191efa92ea50ce7d71f6c283697b84e81e85b19e0e91f46d1bba677655cfbd0e", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 6, + "row": 27279 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/util.py", + "sha256": "9a73599090a2f431cb23fab8953b9da03d265bdee1fc0a005a5ee9acd3cb5c97", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 6, + "row": 25200 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/vendored/packaging/_typing.py", + "sha256": "c79f44850e7b4cc4fe9134722d9576e4766f6061b06ee713a3a88a87f3b4b4cc", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 6, + "row": 30926 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/vendored/packaging/tags.py", + "sha256": "cbc86016a7d5d0aae2a3e1de80f0770f4a7f01e898704f17c0094476612b0ded", + "language": "Python", + "lines": 852, + "truncated": false, + "block": 9, + "row": 12192 + }, + { + "path": "venv/lib/python3.8/site-packages/wheel/wheelfile.py", + "sha256": "eca80e2b5ce7ae8f83f007a580d104e2383a7c361763f06ee9cadda8b6f61104", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 6, + "row": 45479 + }, + { + "path": "venv/skimpytools/get_subsytems.py", + "sha256": "d524415c493c33bbd7d06845872516c5ba3310f629e6b7e855d152a66bce99f7", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 9, + "row": 6901 + }, + { + "path": "venv/skimpytools/npy_to_hdf5.py", + "sha256": "d711ef0b9184af7d6faec18807576506fd1a9d1368676580db65e5e9992b0237", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 9, + "row": 9697 + }, + { + "path": "venv/skimpytools/stability.py", + "sha256": "37a1d9c92df25e44e01bd013a7e245fd6f957ec092b0e6ae91dc314a538e5696", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 9, + "row": 10183 + }, + { + "path": "viz/controll_coefficients.py", + "sha256": "28114b3295592521b63a3f2844e21ccffc01d2b80a85d3b867a78b5d5ee24aae", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 9, + "row": 8048 + }, + { + "path": "viz/escher.py", + "sha256": "20307d744a17e8a2efcdfbab9b02980326c9ac68072c81fd5e88468606b660f7", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 9, + "row": 8845 + }, + { + "path": "viz/flux_profile.py", + "sha256": "45624f8cb5c0689eac9abf1bdc4fa30f15e04e2097ffef23783c846c266b4d9a", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 9, + "row": 7931 + }, + { + "path": "viz/modal.py", + "sha256": "6bd071d4bc58da6928cca255177df570cf95f8f2146e40ca0b888f8ad4fe1954", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 9, + "row": 8824 + }, + { + "path": "viz/plotting.py", + "sha256": "f9085c5e9578567a3190b36bc084d19c6e281108471500e4d39b0a8fb2ce68db", + "language": "Python", + "lines": 204, + "truncated": false, + "block": 9, + "row": 9854 + }, + { + "path": "viz/sensitivty.py", + "sha256": "95e9ee6188cd6eb886cb6c497413d49363bd42cd3b41fbf0e10a80e98de8a248", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 9, + "row": 8166 + }, + { + "path": "viz/utils.py", + "sha256": "7f35f394be2caf4a228b64552a7bb3d160ef106abad6b82018619d22ae66c200", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 9, + "row": 8562 + } + ] +} \ No newline at end of file