{ "format": "oscr-script-manifest/1", "repository": "github.com/dellytools/delly", "url": "https://github.com/dellytools/delly", "host": "github.com", "commit": "c6474a25a125982a85829749ab7c14c63eaf17a2", "license": "BSD-3-Clause", "license_confirmed_by": "license file LICENSE", "redistribution": "yes", "files": [ { "path": "LICENSE", "sha256": "5c2e1c1a30e65e75e26b6c2145fc0fe10ac96855b9dada16e854e45bfbd6f4ee", "language": "License", "lines": 21, "truncated": false, "block": 9, "row": 2888 }, { "path": "R/cnv.R", "sha256": "998dc7cb3825d1891a130caae7d76e08c159e13901e86760ebb1180c29086ed9", "language": "R", "lines": 33, "truncated": false, "block": 9, "row": 12838 }, { "path": "R/gcbias.R", "sha256": "614715c9e4067af7fc2dedde19ab4ca449087e6310caffa610bb04bf71c97d31", "language": "R", "lines": 19, "truncated": false, "block": 9, "row": 12804 }, { "path": "R/rd.R", "sha256": "b6102f04ebff2536825710d090efb9d380963aa7724072998653cc8f13348d6a", "language": "R", "lines": 84, "truncated": false, "block": 9, "row": 13177 }, { "path": "README.md", "sha256": "4b8252f82c391b3a277415c8c5dd8fca62f234691b4aeb19d373de220fb5dbdc", "language": "Text", "lines": 266, "truncated": false, "block": 9, "row": 14721 }, { "path": "scripts/delly2bnd.py", "sha256": "a724cc689d09b8f94ca205ec2cf3cf44758dba2bd0d45ebb602b8caa5da13a55", "language": "Python", "lines": 165, "truncated": false, "block": 9, "row": 9887 }, { "path": "src/align.h", "sha256": "b0dcc2759f6b13eaa6de087b699a6c70beb0a430f285943fdcb273497c04d57b", "language": "C/C++", "lines": 249, "truncated": false, "block": 9, "row": 1672 }, { "path": "src/asmode.h", "sha256": "83e5075ac460f977d4d3a6eb4f74fbb6ecf619002666fd3a6c8d5f2100ffd8c3", "language": "C/C++", "lines": 897, "truncated": false, "block": 9, "row": 1827 }, { "path": "src/assemble.h", "sha256": "2593bee36626fe5e2b3d315412dd5f2458aba01fa5d818619ae2f662fb3659b3", "language": "C/C++", "lines": 969, "truncated": false, "block": 9, "row": 1834 }, { "path": "src/bed.h", "sha256": "48513b7e1eb044b654db1fa9e5d88b04461c8db7e87adcc550463947622291e1", "language": "C/C++", "lines": 71, "truncated": false, "block": 9, "row": 1330 }, { "path": "src/bolog.h", "sha256": "8e9693ac46c5b85f555c4a0b82e9e844be161a4b6acb75a5f0d9ed5f09d9513b", "language": "C/C++", "lines": 156, "truncated": false, "block": 9, "row": 1605 }, { "path": "src/cluster.h", "sha256": "ca279f775909de21449c8e5d477388ad23b654a8e7559e8a255abf867e8ff891", "language": "C/C++", "lines": 646, "truncated": false, "block": 9, "row": 1804 }, { "path": "src/cnv.h", "sha256": "733245ac3cc02e4bca705e289cce08cd502a1253d1faa020f3dca2bd90e7678f", "language": "C/C++", "lines": 899, "truncated": false, "block": 9, "row": 1825 }, { "path": "src/coral.h", "sha256": "c564e12583928af241b517100fe5fd3aa06569e4e468e62c52c44ef1593e3598", "language": "C/C++", "lines": 933, "truncated": false, "block": 9, "row": 1833 }, { "path": "src/coverage.h", "sha256": "5c33b1374d0f708f8345d5cf7395c74c3abbf75cc653010f8111fa0ea547dce3", "language": "C/C++", "lines": 785, "truncated": false, "block": 9, "row": 1821 }, { "path": "src/delly.cpp", "sha256": "4a9c1e1e8b09d6832284edd2fad9c6ede1cd25ff2a1e002ab2e5444d1c981593", "language": "C++", "lines": 87, "truncated": false, "block": 9, "row": 373 }, { "path": "src/delly.h", "sha256": "e46e886af1fe8d649a897761e20bde8cbec9c8c87b4465a17f7a9a2d38f15f13", "language": "C/C++", "lines": 430, "truncated": false, "block": 9, "row": 1772 }, { "path": "src/edlib.cpp", "sha256": "58308d9376ba74d8dd3100e8a7f661717def3621b036667a043e83e35eb7405d", "language": "C++", "lines": 1480, "truncated": false, "block": 9, "row": 1074 }, { "path": "src/edlib.h", "sha256": "faf76e864ff653b91b91f56a09746fa70a4c7bd2180cd17c138cc98116a64944", "language": "C/C++", "lines": 277, "truncated": false, "block": 9, "row": 1714 }, { "path": "src/filter.h", "sha256": "108dacdde2dc65478ad14b0a6a4eaf313c5287527603e24d24cda2f2d396df48", "language": "C/C++", "lines": 1407, "truncated": false, "block": 9, "row": 1855 }, { "path": "src/gaf.h", "sha256": "46ceed70f61be908bed89690cab370d650cdc4858cf5f4153e7325f5e021c601", "language": "C/C++", "lines": 172, "truncated": false, "block": 9, "row": 1615 }, { "path": "src/gcbias.h", "sha256": "da0e21fc86a04f430bfbc0cf0ca60b98eb8eac72b6e0421a12e334948c1ad4a3", "language": "C/C++", "lines": 445, "truncated": false, "block": 9, "row": 1780 }, { "path": "src/genotype.h", "sha256": "89fe05d17338a886d323a9c0a4a04e1003c65e004f71519f1eb97162206f7209", "language": "C/C++", "lines": 401, "truncated": false, "block": 9, "row": 1778 }, { "path": "src/gfa.h", "sha256": "e5e8a13a0789850c8bd63714d38718baf9ecb31ba9875e010a186ae92169464b", "language": "C/C++", "lines": 214, "truncated": false, "block": 9, "row": 1612 }, { "path": "src/gotoh.h", "sha256": "1db3b7e20d724ebe454fbf18e427baf665400a5456c16691f4fa9330d24ff4a5", "language": "C/C++", "lines": 194, "truncated": false, "block": 9, "row": 1603 }, { "path": "src/junction.h", "sha256": "8ce22eab144bfc16ea1af5ac51d67436522c00d356d00d38905b1e4a1db0b29e", "language": "C/C++", "lines": 752, "truncated": false, "block": 9, "row": 1826 }, { "path": "src/merge.h", "sha256": "94c26450c0d15befdbeec16c8ae74e15e0ee8982f70b558b67bf5479feff089c", "language": "C/C++", "lines": 2166, "truncated": false, "block": 9, "row": 1865 }, { "path": "src/methyl.h", "sha256": "31f82271227da57772cafd5df794ad3d2fc57140bd4bf0f548bbfce3f7c879d5", "language": "C/C++", "lines": 572, "truncated": false, "block": 9, "row": 1800 }, { "path": "src/modvcf.h", "sha256": "e030cffa2f2a5490e2d084178c6d07e42ebe02a9fbf88642ee580309e9f34888", "language": "C/C++", "lines": 816, "truncated": false, "block": 9, "row": 1832 }, { "path": "src/msa.h", "sha256": "74193a2ee589a00b3bd3e843bbfb89c384727f745923de01d3b7441a073423b8", "language": "C/C++", "lines": 250, "truncated": false, "block": 9, "row": 1669 }, { "path": "src/needle.h", "sha256": "798c76da161f7e206a39b735f47a84cf49697bb7034bc9786cf7dddde3d249da", "language": "C/C++", "lines": 409, "truncated": false, "block": 9, "row": 1742 }, { "path": "src/pangenome.h", "sha256": "e0e67b04b4b4dcf5e3fcf392c04241dd216bdaf602c1df6c1569c7b65d7fa894", "language": "C/C++", "lines": 289, "truncated": false, "block": 9, "row": 1725 }, { "path": "src/ploidy.h", "sha256": "91838e1372401dcf65e3f39266b2c5a77523065ae50bf82ad5c2dc7d4b167c54", "language": "C/C++", "lines": 368, "truncated": false, "block": 9, "row": 1733 }, { "path": "src/popgen.h", "sha256": "7d463f2ab82c5115ce652492dedcb68cd6fd4a1c738f217f87fc7c32da04dd61", "language": "C/C++", "lines": 305, "truncated": false, "block": 9, "row": 1704 }, { "path": "src/scan.h", "sha256": "fc1b07e68d44c89b9762ab28322bc70b2c84ac42da2c3464ab177ae8e7ccfb32", "language": "C/C++", "lines": 285, "truncated": false, "block": 9, "row": 1708 }, { "path": "src/shortpe.h", "sha256": "1a125f18d29b00d14c75e6c6fe3fc6ba574d4b31619daca5d076f3ad77690be8", "language": "C/C++", "lines": 626, "truncated": false, "block": 9, "row": 1807 }, { "path": "src/split.h", "sha256": "a7d713a23e2329cc7fd2f030a62cb9eacc59c69a954187ffff458c0fc31cd12d", "language": "C/C++", "lines": 677, "truncated": false, "block": 9, "row": 1808 }, { "path": "src/svanno.h", "sha256": "d87ea4e978d19acab9847c8149e0383bd317745d54759401b09af55fe0d22dc8", "language": "C/C++", "lines": 241, "truncated": false, "block": 9, "row": 1850 }, { "path": "src/tags.h", "sha256": "9e22669ef7cf24afabdd5e029c0ccb3c065efc16c889ab866966fec72d07dadb", "language": "C/C++", "lines": 375, "truncated": false, "block": 9, "row": 1755 }, { "path": "src/tegua.h", "sha256": "1d96d5ea9499a2be2745ae82a5698da92e711296d4d2f9420c2a34a7b63d95eb", "language": "C/C++", "lines": 450, "truncated": false, "block": 9, "row": 1783 }, { "path": "src/threadpool.h", "sha256": "80bf0a2b5b4ffeef458ff52aded9ef22725f19c109e54a810fa68b630f479823", "language": "C/C++", "lines": 81, "truncated": false, "block": 9, "row": 1306 }, { "path": "src/util.h", "sha256": "db12a9df6e3e39a0ff66941f2a7cf117bddc3e4632c00dca68f032e13fff21fb", "language": "C/C++", "lines": 941, "truncated": false, "block": 9, "row": 1824 }, { "path": "src/version.h", "sha256": "21eb77ac00df7903ce3f88749719d2daf849f982a444a5f8368b2cf89d5c21c4", "language": "C/C++", "lines": 60, "truncated": false, "block": 9, "row": 1483 } ] }