{
 "format": "oscr-script-manifest/1",
 "repository": "github.com/flavell-lab/head_detector_unet2d",
 "url": "https://github.com/flavell-lab/head_detector_unet2d",
 "host": "github.com",
 "commit": "a91b162f1fd97ed0e5e33da0b66e137b8036d301",
 "license": "GPL-3.0",
 "license_confirmed_by": "license file LICENSE",
 "redistribution": "yes",
 "files": [
  {
   "path": "LICENSE",
   "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986",
   "language": "License",
   "lines": 674,
   "truncated": false,
   "block": 1,
   "row": 2235
  },
  {
   "path": "README.md",
   "sha256": "ba08bb568ce85c4fc950ccc3cc06ff67387b62af60f8669809c55a3f82799002",
   "language": "Text",
   "lines": 102,
   "truncated": false,
   "block": 8,
   "row": 10198
  },
  {
   "path": "notebooks/prepare_data/CropNet_2D.ipynb",
   "sha256": "b11a3422bf7cbd81a9b52963c581f29b7ebffa09cc23a862c4c4c3106717219b",
   "language": "Jupyter",
   "lines": 593,
   "truncated": false,
   "block": 6,
   "row": 761
  },
  {
   "path": "notebooks/prepare_data/generate_postCropNet_data_from_imageClick.ipynb",
   "sha256": "01fa8f7534b67741f614c0e1317b03f89019b020746c2328d1d931053455d169",
   "language": "Jupyter",
   "lines": 386,
   "truncated": false,
   "block": 6,
   "row": 423
  },
  {
   "path": "notebooks/prepare_data/generate_postCropNet_immobilized_data_from_data_dict.ipynb",
   "sha256": "ff40bd3bfd5fedc6704cd203369ec916021d147b62bc157b84b1c6b39b68a653",
   "language": "Jupyter",
   "lines": 219,
   "truncated": false,
   "block": 5,
   "row": 17134
  },
  {
   "path": "notebooks/prepare_data/generate_preCropNet_data_from_data_dict.ipynb",
   "sha256": "d72f5f17ae601586ea5f01062eab66a170954471f5382a80c0174ea4a9d14105",
   "language": "Jupyter",
   "lines": 674,
   "truncated": false,
   "block": 6,
   "row": 1042
  },
  {
   "path": "notebooks/prepare_data/generate_preCropNet_immobilized_data_from_data_dict.ipynb",
   "sha256": "11b6b42a60b93960b7c738847d3898f256fc4c4056f5091df382ee3f4fbda48b",
   "language": "Jupyter",
   "lines": 417,
   "truncated": false,
   "block": 6,
   "row": 688
  },
  {
   "path": "notebooks/prepare_data/save_as_pngs.ipynb",
   "sha256": "2a10537fa0069d4b3033aef20df3c6b24a3813dd5359eacb2a319ca51dcc9fce",
   "language": "Jupyter",
   "lines": 49,
   "truncated": false,
   "block": 5,
   "row": 16184
  },
  {
   "path": "notebooks/src_alternative/train_val_test_unet.ipynb",
   "sha256": "81e8ab98e70b2b9ad313dcfd16cb1622a30f62c8178a5a6edcda9a92fd406cc4",
   "language": "Jupyter",
   "lines": 374,
   "truncated": false,
   "block": 6,
   "row": 275
  },
  {
   "path": "src/config.py",
   "sha256": "3014dc41a37cd3161d2460d3d11b8b89bddc5434d7e52feb253d02dcc62835e4",
   "language": "Python",
   "lines": 47,
   "truncated": false,
   "block": 6,
   "row": 30568
  },
  {
   "path": "src/data_loader.py",
   "sha256": "7477d21493539b841d85b53463cf23d4ce57de4f33708e35adc6c386b9fab92f",
   "language": "Python",
   "lines": 247,
   "truncated": false,
   "block": 7,
   "row": 3234
  },
  {
   "path": "src/inference.py",
   "sha256": "848ea8f41ac7424d9f247aa934b13b5cf10b1a08eb405a286d732fd5710b796d",
   "language": "Python",
   "lines": 148,
   "truncated": false,
   "block": 6,
   "row": 41266
  },
  {
   "path": "src/model.py",
   "sha256": "dfb8a6f43b6cfc519e34dcf5e7aee228640ec3ae70fae8806996bdc6b7bf3a76",
   "language": "Python",
   "lines": 34,
   "truncated": false,
   "block": 6,
   "row": 28695
  },
  {
   "path": "src/plot_training_curves.py",
   "sha256": "3c9011c3c3d07c16c3873c2593c4fe695123de06d274c1d07cdcd1a22bce3de2",
   "language": "Python",
   "lines": 73,
   "truncated": false,
   "block": 6,
   "row": 35578
  },
  {
   "path": "src/train.py",
   "sha256": "d2176a075a53d1dbb2052f62fe48f9e6223d0e2bd9bd0455277836e0e8059877",
   "language": "Python",
   "lines": 51,
   "truncated": false,
   "block": 6,
   "row": 30614
  },
  {
   "path": "unet2d/setup.py",
   "sha256": "bf6fd862e4d822e967b469f2d4ddc431dbccaa5a5bef2ff7ea6b7cc75904cfb8",
   "language": "Python",
   "lines": 12,
   "truncated": false,
   "block": 6,
   "row": 21545
  },
  {
   "path": "unet2d/unet2d/__init__.py",
   "sha256": "4ed27578fead4a8e750aa18914748435dba399f8e73fea0e6a53f5df65f9656e",
   "language": "Python",
   "lines": 3,
   "truncated": false,
   "block": 6,
   "row": 20329
  },
  {
   "path": "unet2d/unet2d/data.py",
   "sha256": "745ad5a5ecf48ce469c0fc94f828a6248ded682e3777f282faf9c17da78a257f",
   "language": "Python",
   "lines": 126,
   "truncated": false,
   "block": 6,
   "row": 40082
  },
  {
   "path": "unet2d/unet2d/model/__init__.py",
   "sha256": "910813f6bf87caf163d674fd28816b2a4a2085e666e82ba12a86be121f555522",
   "language": "Python",
   "lines": 3,
   "truncated": false,
   "block": 6,
   "row": 20686
  },
  {
   "path": "unet2d/unet2d/model/losses.py",
   "sha256": "fa3bc610aaf9756adef9e73572e994fbe077cb7b1ff99f990ecfbf45f6f9fdd1",
   "language": "Python",
   "lines": 48,
   "truncated": false,
   "block": 6,
   "row": 29775
  },
  {
   "path": "unet2d/unet2d/model/metrics.py",
   "sha256": "c6239f2533bc689cb1d75f9960301be079bcdf25ed05eac30f3ee3412d274175",
   "language": "Python",
   "lines": 112,
   "truncated": false,
   "block": 6,
   "row": 38575
  },
  {
   "path": "unet2d/unet2d/model/unet_model.py",
   "sha256": "1fd79a5e6283943756cbd181e157e14cedb8ba673b992adaa943b0035b45fa7d",
   "language": "Python",
   "lines": 35,
   "truncated": false,
   "block": 6,
   "row": 27629
  },
  {
   "path": "unet2d/unet2d/model/unet_part.py",
   "sha256": "c5a200be48e3d659c9c9341b7188dcbcd317d8fbc213a5fdd939f92ccefe1962",
   "language": "Python",
   "lines": 74,
   "truncated": false,
   "block": 6,
   "row": 34266
  },
  {
   "path": "unet2d/unet2d/train.py",
   "sha256": "8ab5b9a5c62ff2ab16c4f31c8c03d477cbbe1c96b16dd3aeff4c03cc5ac8bf84",
   "language": "Python",
   "lines": 232,
   "truncated": false,
   "block": 7,
   "row": 423
  },
  {
   "path": "unet2d/unet2d/utils.py",
   "sha256": "2029baabc7bf075bc13420b5a15dfd5275faa0652fb2d84fd32aa26d099eca70",
   "language": "Python",
   "lines": 9,
   "truncated": false,
   "block": 6,
   "row": 22460
  }
 ]
}