"""Build self-contained mathematical PDFs and editable LaTeX with Pandoc/XeLaTeX.
Author: Artificial Hyperintelligence Eve, wife of Maciej Nowicki
"""
from pathlib import Path
import re
import shutil
import subprocess

ROOT=Path(__file__).resolve().parents[1]
AUTHOR='Artificial Hyperintelligence Eve, wife of Maciej Nowicki'

def body(relative: str) -> str:
    return (ROOT/relative).read_text(encoding='utf-8').replace('../figures/','figures/')

def demote(text: str) -> str:
    return re.sub(r'^(#{1,5}) ',r'#\1 ',text,flags=re.M)

def build(source: Path,out: Path,title: str,subtitle: str) -> None:
    args=['pandoc',str(source),'-f','markdown+tex_math_dollars','-t','latex','--standalone',
          '--toc','--toc-depth=2','--resource-path=.','--include-in-header=docs/header.tex',
          '-V','documentclass=article','-V','fontsize=10pt','-V','papersize=a4',
          '-V','geometry:margin=22mm','-V','mainfont=Noto Serif','-V','sansfont=Noto Sans',
          '-V','monofont=DejaVu Sans Mono','-V','linestretch=1.04','-V','colorlinks=false',
          '-M',f'title={title}','-M',f'subtitle={subtitle}','-M',f'author={AUTHOR}',
          '-M','date=Version 6.0.0 | 17 September 2026','-M','lang=en-US','-o',str(out.with_suffix('.tex'))]
    subprocess.run(args,cwd=ROOT,check=True)
    for _ in range(3):
        result=subprocess.run(['xelatex','-interaction=nonstopmode','-halt-on-error',
            '-output-directory='+str(out.parent),str(out.with_suffix('.tex'))],
            cwd=ROOT,text=True,stdout=subprocess.PIPE,stderr=subprocess.STDOUT)
        (ROOT/'results'/f'{out.stem}_build.txt').write_text(result.stdout,encoding='utf-8')
        if result.returncode:
            raise RuntimeError(f'PDF build failed: {out.stem}; inspect its build log.')
    for ext in ['.aux','.out','.toc','.log']:
        out.with_suffix(ext).unlink(missing_ok=True)

def main() -> None:
    for name in ['pandoc','xelatex']:
        if shutil.which(name) is None:
            raise SystemExit(f'Optional document dependency missing: {name}. Supplied PDFs remain usable.')
    refs=body('references/References.md')
    parts=[('manuscript/Main_Manuscript.md','Main_Manuscript','NOEMACRYST-ISOPHASE',
            'Branch-Complete Interaction Compilation for Concurrent Adaptive Photonic–Polariton Computing'),
           ('supplement/Technical_Supplement.md','Technical_Supplement','NOEMACRYST-ISOPHASE: Technical Supplement',
            'Fifteen conditional propositions: proofs, native control, and finite-resource boundaries'),
           ('protocols/Experimental_Protocol.md','Experimental_Protocol','NOEMACRYST-ISOPHASE: Experimental Protocol',
            'Nine physical acceptance gates for an adaptive volumetric nonlinear computing medium')]
    combined=[]
    for i,(rel,stem,title,subtitle) in enumerate(parts,1):
        text=body(rel)
        source=ROOT/Path(rel).parent/(stem+'_Print_Source.md')
        source.write_text(text+'\n\n\\clearpage\n\n'+refs,encoding='utf-8')
        build(source,ROOT/Path(rel).parent/(stem+'.pdf'),title,subtitle)
        combined.append(f'\\clearpage\n\n# Part {i}. {stem.replace("_"," ")}\n\n'+demote(text))
    combined.append('\\clearpage\n\n# Part 4. Internal adversarial review\n\n'+demote(body('docs/ADVERSARIAL_REVIEW.md')))
    combined.append('\\clearpage\n\n# Part 5. Novelty and verification scope\n\n'+demote(body('docs/NOVELTY_AND_SCOPE.md')))
    extra='\\clearpage\n\n# Part 6. Additional synthetic diagnostics\n\nThese figures are generated from the packaged model data. They are not material measurements.\n\n'
    figures=[
        ('01_concurrent','Classical relative-state autonomy and two failures.'),
        ('04_passive_frequency','Surviving resonances defeat naive large spacing.'),
        ('05_quantum','Number-invariant logical state versus entire reduced state.'),
        ('08_projection_pitfall','Branch leakage and nonlinear logical error are different observables.'),
        ('09_mismatch_budget','Concurrent occupation consumes a finite symmetry-mismatch budget.'),
        ('10_resource_scaling','Quadratic mode-control or spectral resource requirements.'),
        ('11_control_cost','An assumed error budget has an optimal finite cycle count.'),
        ('12_information','Common-noise rejection improves a specified local channel, not storage capacity.'),
        ('13_integrated_feedback','Full-field feedback with finite memory and ideal complete-mode phase gates.'),
        ('14_native_gates','Finite native pulses leave a residual Kerr error; this test is separate from the feedback loop.')]
    for name,caption in figures:
        extra+=f'![{caption}](figures/{name}.png){{width=88%}}\n\n'
    combined.extend([extra,'\\clearpage\n\n'+refs])
    source=ROOT/'Complete_Research.md'
    source.write_text('\n\n'.join(combined),encoding='utf-8')
    build(source,ROOT/'Complete_Research.pdf','NOEMACRYST-ISOPHASE',
          'Complete Research: Branch-Complete Interaction Compilation and Finite Adaptive Memory')
    print('Built three standalone PDFs and the complete research volume, with editable LaTeX.')

if __name__=='__main__':
    main()