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+%ISOgrk1; +%ISOgrk2; +%ISOgrk4; + +%ISOtech; +%ISOgrk3; +%ISOamsa; +%ISOamsb; +%ISOamsc; +%ISOamsn; +%ISOamso; +%ISOamsr; +%ISOmscr; +%ISOmfrk; +%ISOmopf; + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB.dtd new file mode 100644 index 0000000000000000000000000000000000000000..738efa95c9aaffd49f32258d63ee3281bb36a131 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB.dtd @@ -0,0 +1,98 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%MMDB_module; + + +%MMDB_Chemical_graph_module; + + +%MMDB_Features_module; + + +%MMDB_Structural_model_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..84245331459811731592951a7543d2ee55d696b7 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB.mod.dtd @@ -0,0 +1,259 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd new file mode 100644 index 0000000000000000000000000000000000000000..fd56bf75e62766fc881f16c3cb2e87e1cc4898f4 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd @@ -0,0 +1,98 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%MMDB_module; + + +%MMDB_Chemical_graph_module; + + +%MMDB_Features_module; + + +%MMDB_Structural_model_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..576335487c06df71caa517b6a3a200abeb4bacdd --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd @@ -0,0 +1,561 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB_Features.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB_Features.dtd new file mode 100644 index 0000000000000000000000000000000000000000..b8eb2957c92fcd73a2f6cd7693d5def6d96b66aa --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB_Features.dtd @@ -0,0 +1,98 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%MMDB_module; + + +%MMDB_Chemical_graph_module; + + +%MMDB_Features_module; + + +%MMDB_Structural_model_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB_Features.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB_Features.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..160fb02a556b0dfbc3b8a38e491abae9cb34e664 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB_Features.mod.dtd @@ -0,0 +1,932 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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+%GenBank_General_module; + + +%MMDB_module; + + +%MMDB_Chemical_graph_module; + + +%MMDB_Features_module; + + +%MMDB_Structural_model_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..aa9f16ca7362775c7546ddf889ddcf871e2e65e6 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd @@ -0,0 +1,676 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Access.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Access.dtd new file mode 100644 index 0000000000000000000000000000000000000000..5dcedf035db84ce360e341244a148e295a342694 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Access.dtd @@ -0,0 +1,17 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_Access_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Access.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Access.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..e83ad2aa97567b80713c545a05d6062de3cff034 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Access.mod.dtd @@ -0,0 +1,49 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Biblio.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Biblio.dtd new file mode 100644 index 0000000000000000000000000000000000000000..17edc09196cce683aa8fb73b65dff677b881af56 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Biblio.dtd @@ -0,0 +1,20 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_Biblio_module; + + +%NCBI_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..e0b7e1d9f6fbec5bf546e4f1e9258af5adf2c908 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd @@ -0,0 +1,690 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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+%NCBI_BioSource_module; + + +%NCBI_General_module; + + +%NCBI_Organism_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..6b5c5da113b42305a66fd8fdd05759cfb98c3981 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd @@ -0,0 +1,200 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BioTree.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BioTree.dtd new file mode 100644 index 0000000000000000000000000000000000000000..26ba5d90e96fee41f5aa11a1f137190e7ac26c13 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BioTree.dtd @@ -0,0 +1,17 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_BioTree_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..7a2ad1a13d370fbb15150d87a3adcef58de9d049 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd @@ -0,0 +1,109 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Blast4.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Blast4.dtd new file mode 100644 index 0000000000000000000000000000000000000000..24437c512f1ac6c3322506a39c24f4d8ee20768f --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Blast4.dtd @@ -0,0 +1,95 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Blast4_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_ScoreMat_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Seqset_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..f001a47f26e4b532100d7592ba4fa2f8460d4d46 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd @@ -0,0 +1,1498 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BlastDL.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BlastDL.dtd new file mode 100644 index 0000000000000000000000000000000000000000..451e782fb7ccb3730a468cc6f3e8f2782d18dcfe --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BlastDL.dtd @@ -0,0 +1,89 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_BlastDL_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..78a99bb9949d4b0fad3c930021723e425ce1f82d --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd @@ -0,0 +1,138 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd new file mode 100644 index 0000000000000000000000000000000000000000..307176aaf01328f0e8789f75e87118bc7549cd97 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd @@ -0,0 +1,17 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_BlastOutput_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..7b0f47ffe80f3521ff47cea5dcf531290f82e9b9 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd @@ -0,0 +1,273 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Cdd.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Cdd.dtd new file mode 100644 index 0000000000000000000000000000000000000000..b2d06ad60b64a640f5d4aa691c1bfabac11f6953 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Cdd.dtd @@ -0,0 +1,110 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%MMDB_module; + + +%MMDB_Chemical_graph_module; + + +%MMDB_Features_module; + + +%MMDB_Structural_model_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Cdd_module; + + +%NCBI_Cn3d_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_ScoreMat_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Seqset_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..7cf68d65403eb00229ec094b1e042fae56fa5634 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd @@ -0,0 +1,1088 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Cn3d.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Cn3d.dtd new file mode 100644 index 0000000000000000000000000000000000000000..95580456eb78a2f1a1e91e2f2ce32e60c784c4d0 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Cn3d.dtd @@ -0,0 +1,101 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%MMDB_module; + + +%MMDB_Chemical_graph_module; + + +%MMDB_Features_module; + + +%MMDB_Structural_model_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Cn3d_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..16a815f9e2f79aa8b900c3b67e089e1a2f908305 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd @@ -0,0 +1,534 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..3919c3e8ae2609ec707c2f29b37e743ff73de730 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Entrez2.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Entrez2.dtd new file mode 100644 index 0000000000000000000000000000000000000000..a08a9072524ede0577c1121d27f93bad11d1d042 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Entrez2.dtd @@ -0,0 +1,17 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_Entrez2_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..5eb72c9b0bd8af2d4ae53e51a434ab63ab9d4d7e --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd @@ -0,0 +1,747 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd new file mode 100644 index 0000000000000000000000000000000000000000..36e206f6c70d34e5ff543f4ae28995b05fef121b --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd @@ -0,0 +1,89 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Entrezgene_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..c75d32f25a9fb9d9bcb7f00d0c9e2c7b9ce5b9b9 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd @@ -0,0 +1,394 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_FeatDef.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_FeatDef.dtd new file mode 100644 index 0000000000000000000000000000000000000000..a3ce559da877c9cf61ba0979b981fc568ad439fc --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_FeatDef.dtd @@ -0,0 +1,17 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_FeatDef_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..65fbf9008b541d9807205b220e0a0a35cbd4291f --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd @@ -0,0 +1,97 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_GBSeq.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_GBSeq.dtd new file mode 100644 index 0000000000000000000000000000000000000000..d317e9663396fa4ed036d39af9702383e8d4aa39 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_GBSeq.dtd @@ -0,0 +1,17 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_GBSeq_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..95be4f3c67a6df0ac2054c20115a70cf084f4ab7 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd @@ -0,0 +1,407 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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0000000000000000000000000000000000000000..be703afdd0f16966408ca8b744bdeae6daad4af3 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd @@ -0,0 +1,97 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_General.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_General.dtd new file mode 100644 index 0000000000000000000000000000000000000000..a8bb6c1adb7c0d03f470e0b00498a4d8ec9da95f --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_General.dtd @@ -0,0 +1,17 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_General.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_General.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..c573ca5786894322c93e7a2744389fd80eca09eb --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_General.mod.dtd @@ -0,0 +1,333 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ID1Access.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ID1Access.dtd new file mode 100644 index 0000000000000000000000000000000000000000..8e57ced97b298d8ca909f6387002886f7fce015a --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ID1Access.dtd @@ -0,0 +1,92 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_ID1Access_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Seqset_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..b489907402d3b68d9bc5be9183a76db9831ecb29 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd @@ -0,0 +1,218 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ID2Access.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ID2Access.dtd new file mode 100644 index 0000000000000000000000000000000000000000..4adbfa5c9b5103085d2f91b62106547c53138a3e --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ID2Access.dtd @@ -0,0 +1,95 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_ID2Access_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_Seq_split_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Seqset_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..5d5ecf750a6ecf499060cec596a8c3d510cd0413 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd @@ -0,0 +1,759 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_MedArchive.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_MedArchive.dtd new file mode 100644 index 0000000000000000000000000000000000000000..1082302d8a223c576ca6b274b7c5a52ccb92012f --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_MedArchive.dtd @@ -0,0 +1,35 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_Biblio_module; + + +%NCBI_General_module; + + +%NCBI_MedArchive_module; + + +%NCBI_Medlars_module; + + +%NCBI_Medline_module; + + +%NCBI_Pub_module; + + +%NCBI_PubMed_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..b4c2701022dd7380e1d45150bbf5582a05e12df2 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd @@ -0,0 +1,271 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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0000000000000000000000000000000000000000..cb8d48a48d3eafcfd7ea63d0e14545c3163c3b64 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd @@ -0,0 +1,58 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Medline.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Medline.dtd new file mode 100644 index 0000000000000000000000000000000000000000..9495345842431740e5779240fd2dcaf6ec26832b --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Medline.dtd @@ -0,0 +1,23 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_Biblio_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..b05a78ea4dffe4debfb1f8b342cb5ea7b29f4494 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd @@ -0,0 +1,245 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Mim.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Mim.dtd new file mode 100644 index 0000000000000000000000000000000000000000..7dc862be74939cd861f2d2082d966e8e42ec5cf3 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Mim.dtd @@ -0,0 +1,17 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_Mim_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..664a8514581259764aeefe3b994463ccc5ea5098 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd @@ -0,0 +1,354 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Mime.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Mime.dtd new file mode 100644 index 0000000000000000000000000000000000000000..a7be9297b03dbc7bca00ea1bf34da59b15e84eb4 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Mime.dtd @@ -0,0 +1,113 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%MMDB_module; + + +%MMDB_Chemical_graph_module; + + +%MMDB_Features_module; + + +%MMDB_Structural_model_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Cdd_module; + + +%NCBI_Cn3d_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Mime_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_ScoreMat_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Seqset_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..a7f8ef40974d587b262fcd6805a39ccc2ce87d3f --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd @@ -0,0 +1,251 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd new file mode 100644 index 0000000000000000000000000000000000000000..ae5196af075cb2d001fe103b2d6ee2565e38396f --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd @@ -0,0 +1,17 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_ObjPrt_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..23f916a553af8d8ecd3a957c6a11a6837d431ce5 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd @@ -0,0 +1,133 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Organism.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Organism.dtd new file mode 100644 index 0000000000000000000000000000000000000000..b06e17ecf61db004c8d4c2d9b5ac50450f9d94c1 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Organism.dtd @@ -0,0 +1,20 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_General_module; + + +%NCBI_Organism_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..9c36c43619d0fe8dbc107b4e9e55d026d08d7d25 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd @@ -0,0 +1,226 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_PCAssay.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_PCAssay.dtd new file mode 100644 index 0000000000000000000000000000000000000000..7b35bb21fad655f9b7305c49bfed1d374ee038cf --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_PCAssay.dtd @@ -0,0 +1,38 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_PCAssay_module; + + +%NCBI_PCSubstance_module; + + +%NCBI_Pub_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..020ab0740eb1d731f27924a81c24d1d75b003fd0 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd @@ -0,0 +1,1006 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd new file mode 100644 index 0000000000000000000000000000000000000000..0efe6fdf4b8af8180b2cee511946fc39e03071d9 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd @@ -0,0 +1,29 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_Biblio_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_PCSubstance_module; + + +%NCBI_Pub_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..479ed8636542edc57ab2f900a777d620be0bddd0 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd @@ -0,0 +1,1628 @@ + + + + + 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+%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Project_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_PubMed_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Seqset_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Project.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Project.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..e2215fe28953bbd0b37b4e0eda393c8670f7f2bf --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Project.mod.dtd @@ -0,0 +1,158 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Protein.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Protein.dtd new file mode 100644 index 0000000000000000000000000000000000000000..e8279eae261ec9bdaf6aa116dfec442f5adc9e50 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Protein.dtd @@ -0,0 +1,20 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_General_module; + + +%NCBI_Protein_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..e833a5d202c8388d5fac2fd98dafecf1de1b20f3 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd @@ -0,0 +1,75 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Pub.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Pub.dtd new file mode 100644 index 0000000000000000000000000000000000000000..6a52954489e310215de576f9f499fa8afc3eb35b --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Pub.dtd @@ -0,0 +1,26 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_Biblio_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Pub_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..ca92c1841f9fd1e937a7c6bcbf837c59d3c2249d --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd @@ -0,0 +1,120 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_PubMed.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_PubMed.dtd new file mode 100644 index 0000000000000000000000000000000000000000..b272da6b189594173efa0169e680703cdc757b5d --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_PubMed.dtd @@ -0,0 +1,26 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_Biblio_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_PubMed_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..4313a762aa2e3f41991be7e9cc5e609e73c5a6ed --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd @@ -0,0 +1,64 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_RNA.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_RNA.dtd new file mode 100644 index 0000000000000000000000000000000000000000..c64fad9e72dadd499c258811718b6d0eea5d7b14 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_RNA.dtd @@ -0,0 +1,86 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..b1c7991dca708c2aba2d57e289cfb867f02e66f9 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd @@ -0,0 +1,144 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Remap.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Remap.dtd new file mode 100644 index 0000000000000000000000000000000000000000..4696a507c8c61828acbffbb657a98a71e415179f --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Remap.dtd @@ -0,0 +1,89 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Remap_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..9f14d3559f5b895dad9818b056aea900cca37bff --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd @@ -0,0 +1,158 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Rsite.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Rsite.dtd new file mode 100644 index 0000000000000000000000000000000000000000..7bcf4ded594f5c18a824947e6632355ac32b6aa7 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Rsite.dtd @@ -0,0 +1,20 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_General_module; + + +%NCBI_Rsite_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..1758ab1533ed3b338e79d78c317300976faea0d9 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd @@ -0,0 +1,38 @@ + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd new file mode 100644 index 0000000000000000000000000000000000000000..64a676bc011e4fcfa609bc8022099c3e7f93f45c --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd @@ -0,0 +1,92 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_ScoreMat_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Seqset_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..d79b8e06e803135c12721cdf8500433d919009bc --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd @@ -0,0 +1,579 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_SeqCode.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_SeqCode.dtd new file mode 100644 index 0000000000000000000000000000000000000000..3e754ace6235d44918610bc9cdba2a6a00d17125 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_SeqCode.dtd @@ -0,0 +1,17 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_SeqCode_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..1e6096615ce4fee0b49f195d685df6052bc3af73 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd @@ -0,0 +1,150 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_SeqTable.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_SeqTable.dtd new file mode 100644 index 0000000000000000000000000000000000000000..f47d9bad4d4e7e35f71d9b643a5d7fb1b800ffcf --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_SeqTable.dtd @@ -0,0 +1,86 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..54232b32326a1db9d0452435f818fe8d38ba25ae --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd @@ -0,0 +1,390 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seq_split.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seq_split.dtd new file mode 100644 index 0000000000000000000000000000000000000000..d705b7cf94b28320fed9f7a9f4db6b35832961e3 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seq_split.dtd @@ -0,0 +1,92 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_Seq_split_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Seqset_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..4ab94ad4d4ce20d9956e9fd8eb5ecd713b3ebfa2 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd @@ -0,0 +1,559 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqalign.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqalign.dtd new file mode 100644 index 0000000000000000000000000000000000000000..08e37eb9902f29cac8218fb404997b78bc3e6f6d --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqalign.dtd @@ -0,0 +1,86 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..721a351b2627f0e2bced20551dd4eb2f92144d95 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd @@ -0,0 +1,570 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd new file mode 100644 index 0000000000000000000000000000000000000000..48af83fb004ffca1091791bb6a0eba9b32e18a64 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd @@ -0,0 +1,86 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..fb7dc7571e550bbddbe92c7d9c5cabe5b4579e48 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd @@ -0,0 +1,772 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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+%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..7daa894efdf4f5ef95c4d3525bf212ef041b4d4d --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd @@ -0,0 +1,325 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqres.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqres.dtd new file mode 100644 index 0000000000000000000000000000000000000000..353ff75aeee76fea2d820db7e0d35f3e939a4db9 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqres.dtd @@ -0,0 +1,86 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..27dba623009f06bc390677d4b19b7be728d5d669 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd @@ -0,0 +1,134 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqset.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqset.dtd new file mode 100644 index 0000000000000000000000000000000000000000..69de4db4f741263619b4780cc065bfbef7e432a1 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqset.dtd @@ -0,0 +1,89 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Seqset_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..549d8d60db67350bb60122134c02c51d4ff974f8 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd @@ -0,0 +1,138 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Sequence.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Sequence.dtd new file mode 100644 index 0000000000000000000000000000000000000000..78673f6d015cbcc7a9d35c561112cd660b469443 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Sequence.dtd @@ -0,0 +1,86 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..d09ae02802590a964b7095950107aac08b6bd850 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd @@ -0,0 +1,1112 @@ + + + + + + + + + + + + + + + + + + + + + + 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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Submit.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Submit.dtd new file mode 100644 index 0000000000000000000000000000000000000000..b81b188dbb849ad0a82a48a2422a236aae0bd470 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Submit.dtd @@ -0,0 +1,92 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Seqset_module; + + +%NCBI_Sequence_module; + + +%NCBI_Submit_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..64885f071aaa3123daec234577212c91efdde8a3 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd @@ -0,0 +1,156 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Systems.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Systems.dtd new file mode 100644 index 0000000000000000000000000000000000000000..d1f8c2a20f198df004fb5253a178e75b80e37da2 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Systems.dtd @@ -0,0 +1,86 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Sequence_module; + + +%NCBI_Systems_module; + + +%NCBI_TxInit_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_TSeq.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_TSeq.dtd new file mode 100644 index 0000000000000000000000000000000000000000..94635570b1107e2a7daa060bda1b34bf3bb69cca --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_TSeq.dtd @@ -0,0 +1,17 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_TSeq_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..e7fc3f480727db0656456b7be43d50f036c02bad --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd @@ -0,0 +1,66 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_TxInit.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_TxInit.dtd new file mode 100644 index 0000000000000000000000000000000000000000..fe9a6c1084b1e528f1d5244c19f684269edd949e --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_TxInit.dtd @@ -0,0 +1,29 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_TxInit_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..d5d97c1e4c66ce5b724285599f6e62632aed1279 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd @@ -0,0 +1,184 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Variation.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Variation.dtd new file mode 100644 index 0000000000000000000000000000000000000000..7a992b1814356be9813c0ce208a26433ab51fc1f --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Variation.dtd @@ -0,0 +1,86 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..ee7f0201bb2d10c5050b79a167c42bb3233b9c87 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd @@ -0,0 +1,944 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_all.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_all.dtd new file mode 100644 index 0000000000000000000000000000000000000000..3ed101df35fec9f395a4fc601983ec4b2335ce89 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NCBI_all.dtd @@ -0,0 +1,202 @@ + + +%NCBI_Entity_module; + + +%Docsum_3_0_module; + + +%Docsum_3_1_module; + + +%Docsum_3_2_module; + + +%Docsum_3_3_module; + + +%Docsum_3_4_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%HomoloGene_module; + + +%INSD_INSDSeq_module; + + +%MMDB_module; + + +%MMDB_Chemical_graph_module; + + +%MMDB_Features_module; + + +%MMDB_Structural_model_module; + + +%NCBI_Access_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_BioTree_module; + + +%NCBI_Blast4_module; + + +%NCBI_BlastDL_module; + + +%NCBI_BlastOutput_module; + + +%NCBI_Cdd_module; + + +%NCBI_Cn3d_module; + + +%NCBI_Entrez2_module; + + +%NCBI_Entrezgene_module; + + +%NCBI_FeatDef_module; + + +%NCBI_GBSeq_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_ID1Access_module; + + +%NCBI_ID2Access_module; + + +%NCBI_MedArchive_module; + + +%NCBI_Medlars_module; + + +%NCBI_Medline_module; + + +%NCBI_Mim_module; + + +%NCBI_Mime_module; + + +%NCBI_ObjPrt_module; + + +%NCBI_Organism_module; + + +%NCBI_PCAssay_module; + + +%NCBI_PCSubstance_module; + + +%NCBI_Project_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_PubMed_module; + + +%NCBI_RNA_module; + + +%NCBI_Remap_module; + + +%NCBI_Rsite_module; + + +%NCBI_ScoreMat_module; + + +%NCBI_SeqCode_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seq_split_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Seqset_module; + + +%NCBI_Sequence_module; + + +%NCBI_Submit_module; + + +%NCBI_TSeq_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%NSE_module; + + +%OMSSA_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NSE.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NSE.dtd new file mode 100644 index 0000000000000000000000000000000000000000..74f0075d8676ef074a8da200bbf8416974cd2e46 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NSE.dtd @@ -0,0 +1,17 @@ + + + + + +%NCBI_Entity_module; + + +%NSE_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NSE.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NSE.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..4327f4855924d463b36064cb5e9456769203ac05 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/NSE.mod.dtd @@ -0,0 +1,895 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/OMSSA.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/OMSSA.dtd new file mode 100644 index 0000000000000000000000000000000000000000..4ab5adcb601e13a4d19e727358d2435005cdf197 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/OMSSA.dtd @@ -0,0 +1,89 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + +%NCBI_Seqfeat_module; + + +%NCBI_Seqloc_module; + + +%NCBI_Seqres_module; + + +%NCBI_Sequence_module; + + +%NCBI_TxInit_module; + + +%NCBI_Variation_module; + + +%OMSSA_module; + + +%PDB_General_module; + + +%PIR_General_module; + + +%PRF_General_module; + + +%SP_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/OMSSA.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/OMSSA.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..26f050e6164655d0b125bd8859cd373511f08754 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/OMSSA.mod.dtd @@ -0,0 +1,1361 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/PDB_General.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/PDB_General.dtd new file mode 100644 index 0000000000000000000000000000000000000000..cb2b6636f084be360177978b151d4e44481ecac0 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/PDB_General.dtd @@ -0,0 +1,20 @@ + + + + + +%NCBI_Entity_module; + + +%NCBI_General_module; + + +%PDB_General_module; diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/PDB_General.mod.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/PDB_General.mod.dtd new file mode 100644 index 0000000000000000000000000000000000000000..1e5aae9b76a82454b7d15c1852701f87a8809456 --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/PDB_General.mod.dtd @@ -0,0 +1,70 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/PIR_General.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/PIR_General.dtd new file mode 100644 index 0000000000000000000000000000000000000000..15f7879a7f29d1a999b098e4903207274226adfc --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/PIR_General.dtd @@ -0,0 +1,86 @@ + + + + + +%NCBI_Entity_module; + + +%EMBL_General_module; + + +%GenBank_General_module; + + +%NCBI_Biblio_module; + + +%NCBI_BioSource_module; + + +%NCBI_Gene_module; + + +%NCBI_General_module; + + +%NCBI_Medline_module; + + +%NCBI_Organism_module; + + +%NCBI_Protein_module; + + +%NCBI_Pub_module; + + +%NCBI_RNA_module; + + +%NCBI_Rsite_module; + + +%NCBI_SeqTable_module; + + +%NCBI_Seqalign_module; + + 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--git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/nlmserials_100101.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/nlmserials_100101.dtd new file mode 100644 index 0000000000000000000000000000000000000000..87c1dc2e46e7a0894c2f15b4b337d6eb64ddd85a --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/nlmserials_100101.dtd @@ -0,0 +1,157 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd new file mode 100644 index 0000000000000000000000000000000000000000..f7397eae83577a89f583d2599e42baff1e7c8eea --- /dev/null +++ b/.venv_haddock/lib/python3.12/site-packages/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd @@ -0,0 +1,80 @@ + + + + + + + + + + +%NlmCommon; + + + + 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