{"expected":{"matches":[{"feature_index":3,"overlap_bases":20}],"query_bed":[822,842],"query_length":20,"union_overlap_bases":20},"family":"touching_boundary","fingerprint":"0b0cb090244ab943fb4f70a4a01752016c31c3cf3b031da86715fc9f02056ad0","group_id":"0b0cb090244ab943fb4f70a4a01752016c31c3cf3b031da86715fc9f02056ad0","id":"INTERVALS-0000000","index":0,"input":{"contigs":{"synthetic_A":1086,"synthetic_B":1256},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":822,"start":818,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":849,"start":842,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":465,"start":393,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":904,"start":801,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":163,"start":52,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":800,"start":766,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":426,"start":379,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":510,"start":461,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":842,"start":823,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":62}],"query_bed":[599,661],"query_length":62,"union_overlap_bases":62},"family":"coordinate_conversion","fingerprint":"249005f8262c621b5531d4697490f5feb642e1859d876f773d49a42d235a42e2","group_id":"249005f8262c621b5531d4697490f5feb642e1859d876f773d49a42d235a42e2","id":"INTERVALS-0000034","index":34,"input":{"contigs":{"synthetic_A":1282,"synthetic_B":1763},"features":[{"basis":"one_closed","contig":"synthetic_A","end":661,"start":600,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1011,"start":941,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1636,"start":1531,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1050,"start":993,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1146,"start":1128,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":117,"start":85,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":416,"start":321,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":920,"start":814,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":661,"start":600,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":53},{"feature_index":1,"overlap_bases":51}],"query_bed":[151,204],"query_length":53,"union_overlap_bases":53},"family":"nested","fingerprint":"ce2978e2b1c26bb6fafdd15d8a16c4aee276146e607beea7ee307537ef84b069","group_id":"ce2978e2b1c26bb6fafdd15d8a16c4aee276146e607beea7ee307537ef84b069","id":"INTERVALS-0000046","index":46,"input":{"contigs":{"synthetic_A":773,"synthetic_B":1784},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":209,"start":146,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":203,"start":153,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1286,"start":1263,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1281,"start":1260,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":582,"start":581,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":625,"start":601,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1682,"start":1656,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":521,"start":416,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":204,"start":152,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":14},{"feature_index":7,"overlap_bases":9}],"query_bed":[697,711],"query_length":14,"union_overlap_bases":14},"family":"coordinate_conversion","fingerprint":"aa90744e1d573e98b0c089edcd0152bf056f2b7687ef804bf3fecaf24751a542","group_id":"aa90744e1d573e98b0c089edcd0152bf056f2b7687ef804bf3fecaf24751a542","id":"INTERVALS-0000064","index":64,"input":{"contigs":{"synthetic_A":848,"synthetic_B":964},"features":[{"basis":"one_closed","contig":"synthetic_B","end":711,"start":698,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":495,"start":465,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":515,"start":456,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":165,"start":115,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":401,"start":374,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":303,"start":264,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":477,"start":361,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":706,"start":687,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":120,"start":56,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":769,"start":715,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":711,"start":698,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":60},{"feature_index":2,"overlap_bases":2}],"query_bed":[409,470],"query_length":61,"union_overlap_bases":61},"family":"overlapping_blocks","fingerprint":"62996a92d63f45772ae775cbc1a2b773ec0486b0fa3461c648f5f7e906dacba3","group_id":"62996a92d63f45772ae775cbc1a2b773ec0486b0fa3461c648f5f7e906dacba3","id":"INTERVALS-0000072","index":72,"input":{"contigs":{"synthetic_A":1694,"synthetic_B":695},"features":[{"basis":"one_closed","contig":"synthetic_A","end":412,"start":407,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":470,"start":411,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":473,"start":468,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1271,"start":1260,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":201,"start":87,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":964,"start":930,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1129,"start":1105,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":406,"start":291,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1364,"start":1328,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":107,"start":49,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":906,"start":881,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":470,"start":409,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":75}],"query_bed":[1060,1135],"query_length":75,"union_overlap_bases":75},"family":"stranded","fingerprint":"8e7ba2ec8a2d1b120586832f928174501b2e0c5ffd4dc4e6f96f76422c06aa10","group_id":"8e7ba2ec8a2d1b120586832f928174501b2e0c5ffd4dc4e6f96f76422c06aa10","id":"INTERVALS-0000083","index":83,"input":{"contigs":{"synthetic_A":1059,"synthetic_B":1632},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1135,"start":1061,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1135,"start":1061,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":572,"start":481,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1328,"start":1239,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":89,"start":69,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":169,"start":163,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":245,"start":166,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":736,"start":645,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1051,"start":1049,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":634,"start":623,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":756,"start":713,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1135,"start":1060,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":64}],"query_bed":[437,501],"query_length":64,"union_overlap_bases":64},"family":"coordinate_conversion","fingerprint":"4bf1a570147410e845d9ef3c4e3695664a8edf20d2bef314b2fada918e2a28f9","group_id":"4bf1a570147410e845d9ef3c4e3695664a8edf20d2bef314b2fada918e2a28f9","id":"INTERVALS-0000089","index":89,"input":{"contigs":{"synthetic_A":1778,"synthetic_B":932},"features":[{"basis":"one_closed","contig":"synthetic_B","end":501,"start":438,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":813,"start":726,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":211,"start":174,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1661,"start":1622,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1015,"start":986,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":596,"start":563,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":501,"start":438,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":78}],"query_bed":[79,157],"query_length":78,"union_overlap_bases":78},"family":"stranded","fingerprint":"aa7e80e0d405cd656d4d7ddcde3879f77603b4618f2ef8a61fe247031cfeefb4","group_id":"aa7e80e0d405cd656d4d7ddcde3879f77603b4618f2ef8a61fe247031cfeefb4","id":"INTERVALS-0000098","index":98,"input":{"contigs":{"synthetic_A":631,"synthetic_B":814},"features":[{"basis":"one_closed","contig":"synthetic_B","end":157,"start":80,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":157,"start":80,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":372,"start":325,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":369,"start":364,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":507,"start":473,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":143,"start":75,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":555,"start":453,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":157,"start":79,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":23},{"feature_index":2,"overlap_bases":2},{"feature_index":4,"overlap_bases":16}],"query_bed":[368,392],"query_length":24,"union_overlap_bases":24},"family":"overlapping_blocks","fingerprint":"6793535a30412733869c1ac9602a57ae034a02f1c7e1e4dd4a69229ff5a21b61","group_id":"6793535a30412733869c1ac9602a57ae034a02f1c7e1e4dd4a69229ff5a21b61","id":"INTERVALS-0000102","index":102,"input":{"contigs":{"synthetic_A":1542,"synthetic_B":1642},"features":[{"basis":"one_closed","contig":"synthetic_B","end":371,"start":366,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":392,"start":370,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":395,"start":391,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":742,"start":653,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":460,"start":377,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":405,"start":387,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":879,"start":839,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":392,"start":369,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":38},{"feature_index":2,"overlap_bases":2},{"feature_index":5,"overlap_bases":3}],"query_bed":[115,154],"query_length":39,"union_overlap_bases":39},"family":"overlapping_blocks","fingerprint":"bca82118d759efa73e164ab333fb6dbe670cea2f8fd031f3fe41ac32595c4f1a","group_id":"bca82118d759efa73e164ab333fb6dbe670cea2f8fd031f3fe41ac32595c4f1a","id":"INTERVALS-0000107","index":107,"input":{"contigs":{"synthetic_A":1171,"synthetic_B":1745},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":118,"start":112,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":154,"start":117,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":157,"start":152,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":558,"start":523,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":575,"start":466,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":118,"start":6,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":919,"start":838,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":704,"start":644,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":166,"start":157,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":447,"start":388,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":154,"start":116,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":10},{"feature_index":2,"overlap_bases":2}],"query_bed":[88,99],"query_length":11,"union_overlap_bases":11},"family":"overlapping_blocks","fingerprint":"2b86d1529125c9e9b275ad5756939bdbb8933d6e65c7905bbd9c03b2e4480530","group_id":"2b86d1529125c9e9b275ad5756939bdbb8933d6e65c7905bbd9c03b2e4480530","id":"INTERVALS-0000117","index":117,"input":{"contigs":{"synthetic_A":974,"synthetic_B":1366},"features":[{"basis":"one_closed","contig":"synthetic_A","end":91,"start":86,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":99,"start":90,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":102,"start":97,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":806,"start":792,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":996,"start":900,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":945,"start":919,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":834,"start":770,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":353,"start":238,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":99,"start":89,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":6},{"feature_index":2,"overlap_bases":2}],"query_bed":[422,429],"query_length":7,"union_overlap_bases":7},"family":"overlapping_blocks","fingerprint":"2c4a4e20ac1cbc0ba357806bf867c4302e113856ae4437fb18c759cd23f28811","group_id":"2c4a4e20ac1cbc0ba357806bf867c4302e113856ae4437fb18c759cd23f28811","id":"INTERVALS-0000137","index":137,"input":{"contigs":{"synthetic_A":947,"synthetic_B":1566},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":425,"start":419,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":429,"start":423,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":432,"start":428,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":298,"start":188,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":107,"start":67,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":873,"start":857,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":329,"start":235,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":122,"start":3,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":568,"start":482,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":301,"start":237,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":833,"start":723,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":429,"start":422,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":8},{"feature_index":1,"overlap_bases":6}],"query_bed":[1102,1110],"query_length":8,"union_overlap_bases":8},"family":"nested","fingerprint":"df93dcbcc04feffa7664ef217abdb328d40ac25708e27201f9262789f2f58383","group_id":"df93dcbcc04feffa7664ef217abdb328d40ac25708e27201f9262789f2f58383","id":"INTERVALS-0000146","index":146,"input":{"contigs":{"synthetic_A":1520,"synthetic_B":616},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1115,"start":1097,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1109,"start":1103,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":495,"start":443,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":561,"start":488,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":287,"start":210,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":230,"start":163,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":106,"start":18,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1215,"start":1215,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":67,"start":4,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1226,"start":1221,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":548,"start":444,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1110,"start":1103,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":28},{"feature_index":1,"overlap_bases":26},{"feature_index":7,"overlap_bases":28}],"query_bed":[369,397],"query_length":28,"union_overlap_bases":28},"family":"nested","fingerprint":"aca4fe26d855c6fe6704a2a5e16177d6ed3c7aa4aeebb8139041e02477a15098","group_id":"aca4fe26d855c6fe6704a2a5e16177d6ed3c7aa4aeebb8139041e02477a15098","id":"INTERVALS-0000151","index":151,"input":{"contigs":{"synthetic_A":661,"synthetic_B":865},"features":[{"basis":"one_closed","contig":"synthetic_B","end":402,"start":365,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":396,"start":371,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":308,"start":191,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":268,"start":165,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":584,"start":468,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":203,"start":152,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":629,"start":580,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":406,"start":332,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":397,"start":370,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":45},{"feature_index":1,"overlap_bases":43}],"query_bed":[703,748],"query_length":45,"union_overlap_bases":45},"family":"nested","fingerprint":"34496ebcf7f03585100f3cd3d480a3c3dcbb627e2b972b49f55c0b5fe07aca6b","group_id":"34496ebcf7f03585100f3cd3d480a3c3dcbb627e2b972b49f55c0b5fe07aca6b","id":"INTERVALS-0000161","index":161,"input":{"contigs":{"synthetic_A":1043,"synthetic_B":1585},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":753,"start":698,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":747,"start":704,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1073,"start":981,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":556,"start":474,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":933,"start":884,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":942,"start":888,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":423,"start":389,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":748,"start":704,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":20},{"feature_index":2,"overlap_bases":2}],"query_bed":[466,487],"query_length":21,"union_overlap_bases":21},"family":"overlapping_blocks","fingerprint":"8023dbba44baae9d93b866c26a5be0dda7b12886a9946a208b477eb308459b13","group_id":"8023dbba44baae9d93b866c26a5be0dda7b12886a9946a208b477eb308459b13","id":"INTERVALS-0000167","index":167,"input":{"contigs":{"synthetic_A":1496,"synthetic_B":1171},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":469,"start":463,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":487,"start":467,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":490,"start":485,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":988,"start":885,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":636,"start":606,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":171,"start":104,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1070,"start":988,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":401,"start":288,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1062,"start":1025,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":487,"start":467,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":43},{"feature_index":2,"overlap_bases":2}],"query_bed":[217,261],"query_length":44,"union_overlap_bases":44},"family":"overlapping_blocks","fingerprint":"1d9c25f6f8ff6e1c142284621c0bbebf15d50e181fc6874105f68a4cdbcf18e0","group_id":"1d9c25f6f8ff6e1c142284621c0bbebf15d50e181fc6874105f68a4cdbcf18e0","id":"INTERVALS-0000172","index":172,"input":{"contigs":{"synthetic_A":1749,"synthetic_B":625},"features":[{"basis":"one_closed","contig":"synthetic_A","end":220,"start":215,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":261,"start":219,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":264,"start":260,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":377,"start":267,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":128,"start":89,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":107,"start":17,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":175,"start":93,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":32,"start":10,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":391,"start":333,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":522,"start":439,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":261,"start":217,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":46}],"query_bed":[369,415],"query_length":46,"union_overlap_bases":46},"family":"stranded","fingerprint":"88970fec9ce59b90bdefe494ac63610a4122d6056683e143d29bea42fdb0731a","group_id":"88970fec9ce59b90bdefe494ac63610a4122d6056683e143d29bea42fdb0731a","id":"INTERVALS-0000173","index":173,"input":{"contigs":{"synthetic_A":1679,"synthetic_B":1726},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":415,"start":369,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":415,"start":370,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":651,"start":600,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":256,"start":245,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1116,"start":1115,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1124,"start":1115,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":442,"start":323,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1492,"start":1412,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":415,"start":369,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":47}],"query_bed":[91,138],"query_length":47,"union_overlap_bases":47},"family":"stranded","fingerprint":"127c7b4439cc43ab08ff1d91d5c1d9bf2371f6a928376c78683cf7d95b430d63","group_id":"127c7b4439cc43ab08ff1d91d5c1d9bf2371f6a928376c78683cf7d95b430d63","id":"INTERVALS-0000183","index":183,"input":{"contigs":{"synthetic_A":700,"synthetic_B":632},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":138,"start":91,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":138,"start":91,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":469,"start":426,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":593,"start":531,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":320,"start":211,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":353,"start":281,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":334,"start":313,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":138,"start":92,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":64},{"feature_index":1,"overlap_bases":62}],"query_bed":[660,724],"query_length":64,"union_overlap_bases":64},"family":"nested","fingerprint":"40f69dd8f6a5b209f49b36b0714235001780f0844b69fbcf46fabe97aa9623c9","group_id":"40f69dd8f6a5b209f49b36b0714235001780f0844b69fbcf46fabe97aa9623c9","id":"INTERVALS-0000186","index":186,"input":{"contigs":{"synthetic_A":1040,"synthetic_B":1316},"features":[{"basis":"one_closed","contig":"synthetic_B","end":729,"start":656,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":723,"start":661,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":153,"start":93,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":131,"start":22,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":548,"start":451,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":830,"start":819,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":736,"start":727,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":724,"start":660,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":35},{"feature_index":2,"overlap_bases":2}],"query_bed":[744,780],"query_length":36,"union_overlap_bases":36},"family":"overlapping_blocks","fingerprint":"f07a07f42feba8beabb010989e2ee077b523216cbed49adf6e9cd3f169963876","group_id":"f07a07f42feba8beabb010989e2ee077b523216cbed49adf6e9cd3f169963876","id":"INTERVALS-0000197","index":197,"input":{"contigs":{"synthetic_A":1127,"synthetic_B":709},"features":[{"basis":"one_closed","contig":"synthetic_A","end":747,"start":742,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":780,"start":746,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":783,"start":779,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":569,"start":463,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":451,"start":352,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":442,"start":350,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1096,"start":997,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":514,"start":403,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":148,"start":70,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":554,"start":492,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":702,"start":589,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":780,"start":744,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":62}],"query_bed":[92,154],"query_length":62,"union_overlap_bases":62},"family":"stranded","fingerprint":"970e4220538ed8b3abff2b95397311ca6339b987fd5e399c81bec1f80319e511","group_id":"970e4220538ed8b3abff2b95397311ca6339b987fd5e399c81bec1f80319e511","id":"INTERVALS-0000198","index":198,"input":{"contigs":{"synthetic_A":718,"synthetic_B":1571},"features":[{"basis":"one_closed","contig":"synthetic_B","end":154,"start":93,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":154,"start":92,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1233,"start":1213,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":225,"start":224,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":600,"start":506,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":537,"start":498,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":431,"start":319,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":154,"start":93,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":31}],"query_bed":[168,199],"query_length":31,"union_overlap_bases":31},"family":"coordinate_conversion","fingerprint":"05e043def246dfb33c1a81bc3994d56b1e3b5d2520cb6be658670a0a9c99888c","group_id":"05e043def246dfb33c1a81bc3994d56b1e3b5d2520cb6be658670a0a9c99888c","id":"INTERVALS-0000204","index":204,"input":{"contigs":{"synthetic_A":1083,"synthetic_B":715},"features":[{"basis":"one_closed","contig":"synthetic_B","end":199,"start":169,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":351,"start":257,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":306,"start":294,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":466,"start":379,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":677,"start":591,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":57,"start":22,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":307,"start":206,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":163,"start":68,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":384,"start":364,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":199,"start":169,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":65},{"feature_index":2,"overlap_bases":2}],"query_bed":[203,269],"query_length":66,"union_overlap_bases":66},"family":"overlapping_blocks","fingerprint":"9ce02100f06b0c89ee60117e61998aa4513267807e080ad485e18bd973da1df8","group_id":"9ce02100f06b0c89ee60117e61998aa4513267807e080ad485e18bd973da1df8","id":"INTERVALS-0000207","index":207,"input":{"contigs":{"synthetic_A":607,"synthetic_B":1336},"features":[{"basis":"one_closed","contig":"synthetic_A","end":206,"start":201,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":269,"start":204,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":272,"start":268,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1174,"start":1092,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":233,"start":200,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":537,"start":442,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":185,"start":107,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1187,"start":1074,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":251,"start":231,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":269,"start":204,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":35},{"feature_index":1,"overlap_bases":33}],"query_bed":[386,421],"query_length":35,"union_overlap_bases":35},"family":"nested","fingerprint":"efb9d73665fcb1e8d2ee9231a0efcf172de39ec0f521436a38bbefe607b1cafa","group_id":"efb9d73665fcb1e8d2ee9231a0efcf172de39ec0f521436a38bbefe607b1cafa","id":"INTERVALS-0000211","index":211,"input":{"contigs":{"synthetic_A":1416,"synthetic_B":1106},"features":[{"basis":"one_closed","contig":"synthetic_B","end":426,"start":382,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":420,"start":388,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":994,"start":957,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":982,"start":867,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":202,"start":85,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":809,"start":772,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":421,"start":387,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":36},{"feature_index":10,"overlap_bases":35}],"query_bed":[673,709],"query_length":36,"union_overlap_bases":36},"family":"coordinate_conversion","fingerprint":"8e89c584d5add7b4594555954df01d7772b9cdcc0e8b793149175af41174c95b","group_id":"8e89c584d5add7b4594555954df01d7772b9cdcc0e8b793149175af41174c95b","id":"INTERVALS-0000214","index":214,"input":{"contigs":{"synthetic_A":664,"synthetic_B":994},"features":[{"basis":"one_closed","contig":"synthetic_B","end":709,"start":674,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":637,"start":622,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":244,"start":188,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":646,"start":528,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":461,"start":436,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":825,"start":825,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":542,"start":452,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":565,"start":496,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":326,"start":324,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":667,"start":553,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":739,"start":675,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":709,"start":674,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[55,81],"query_length":26,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"668d14788af080eccb5ab1c6a5055a9f3d6a8e13aebf98a82da0b89921680b3a","group_id":"668d14788af080eccb5ab1c6a5055a9f3d6a8e13aebf98a82da0b89921680b3a","id":"INTERVALS-0000215","index":215,"input":{"contigs":{"synthetic_A":1201,"synthetic_B":1130},"features":[{"basis":"one_closed","contig":"synthetic_B","end":55,"start":37,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":107,"start":82,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":81,"start":66,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":423,"start":421,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":401,"start":282,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":264,"start":148,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":615,"start":554,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":858,"start":751,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":693,"start":600,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":249,"start":130,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":234,"start":179,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1111,"start":1073,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":81,"start":55,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[613,629],"query_length":16,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"a6ce2eb4879726cda0e54af255d862aa27f51bcb4b4b1360c2e25a60a6e9922c","group_id":"a6ce2eb4879726cda0e54af255d862aa27f51bcb4b4b1360c2e25a60a6e9922c","id":"INTERVALS-0000220","index":220,"input":{"contigs":{"synthetic_A":960,"synthetic_B":1648},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":613,"start":608,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":644,"start":630,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":125,"start":20,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1573,"start":1491,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1054,"start":957,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1275,"start":1194,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":257,"start":207,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":788,"start":722,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":484,"start":455,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":904,"start":790,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":629,"start":614,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":6},{"feature_index":3,"overlap_bases":6}],"query_bed":[198,204],"query_length":6,"union_overlap_bases":6},"family":"stranded","fingerprint":"06811e8abbb4fa1ab0ae557465bff246c825ea71d2875182d8eeb364606484de","group_id":"06811e8abbb4fa1ab0ae557465bff246c825ea71d2875182d8eeb364606484de","id":"INTERVALS-0000248","index":248,"input":{"contigs":{"synthetic_A":647,"synthetic_B":1287},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":204,"start":198,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":204,"start":198,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":50,"start":30,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":223,"start":105,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":565,"start":450,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":25,"start":9,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":397,"start":302,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":500,"start":482,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":202,"start":140,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":349,"start":246,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":204,"start":198,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":42}],"query_bed":[533,575],"query_length":42,"union_overlap_bases":42},"family":"coordinate_conversion","fingerprint":"35831116df567945e864e51609292bbde0f9696ed82a5255fc8be772ce5facc5","group_id":"35831116df567945e864e51609292bbde0f9696ed82a5255fc8be772ce5facc5","id":"INTERVALS-0000249","index":249,"input":{"contigs":{"synthetic_A":1062,"synthetic_B":1739},"features":[{"basis":"one_closed","contig":"synthetic_B","end":575,"start":534,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":535,"start":492,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":483,"start":418,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1295,"start":1248,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1358,"start":1305,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":719,"start":607,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":791,"start":703,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1720,"start":1619,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":513,"start":410,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":216,"start":196,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":575,"start":534,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[229,271],"query_length":42,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"36afb58a00146ff99aacf257f3f1bd98db1adb30856fbe470108ae92391d11ea","group_id":"36afb58a00146ff99aacf257f3f1bd98db1adb30856fbe470108ae92391d11ea","id":"INTERVALS-0000250","index":250,"input":{"contigs":{"synthetic_A":748,"synthetic_B":1224},"features":[{"basis":"one_closed","contig":"synthetic_A","end":229,"start":216,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":290,"start":271,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":584,"start":476,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":800,"start":740,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":587,"start":540,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":872,"start":760,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":660,"start":592,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":918,"start":818,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":101,"start":75,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":396,"start":372,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":593,"start":560,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":460,"start":367,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":271,"start":230,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":45},{"feature_index":2,"overlap_bases":2}],"query_bed":[194,240],"query_length":46,"union_overlap_bases":46},"family":"overlapping_blocks","fingerprint":"45911b02a87f18e60a88ffa8754e5b968b5996d48ab8af09f9dee85039ba97a5","group_id":"45911b02a87f18e60a88ffa8754e5b968b5996d48ab8af09f9dee85039ba97a5","id":"INTERVALS-0000252","index":252,"input":{"contigs":{"synthetic_A":1335,"synthetic_B":1545},"features":[{"basis":"one_closed","contig":"synthetic_A","end":197,"start":192,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":240,"start":196,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":243,"start":239,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":52,"start":2,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":549,"start":524,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1493,"start":1418,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":151,"start":51,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":821,"start":751,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":240,"start":195,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46},{"feature_index":1,"overlap_bases":44}],"query_bed":[858,904],"query_length":46,"union_overlap_bases":46},"family":"nested","fingerprint":"269177a6921d8c2b50e206cc5581d631fd1d105fe7e9f38c907f9e81fbcad584","group_id":"269177a6921d8c2b50e206cc5581d631fd1d105fe7e9f38c907f9e81fbcad584","id":"INTERVALS-0000261","index":261,"input":{"contigs":{"synthetic_A":843,"synthetic_B":1064},"features":[{"basis":"one_closed","contig":"synthetic_B","end":909,"start":854,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":903,"start":859,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":787,"start":669,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":459,"start":408,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":399,"start":318,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":506,"start":450,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":602,"start":521,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":413,"start":396,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":773,"start":706,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":904,"start":859,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":44},{"feature_index":1,"overlap_bases":42}],"query_bed":[243,287],"query_length":44,"union_overlap_bases":44},"family":"nested","fingerprint":"8fa0a8983023ef1adc8c41fe08cf1b16283d3653ed47b377c953078b639d4a00","group_id":"8fa0a8983023ef1adc8c41fe08cf1b16283d3653ed47b377c953078b639d4a00","id":"INTERVALS-0000266","index":266,"input":{"contigs":{"synthetic_A":1599,"synthetic_B":1512},"features":[{"basis":"one_closed","contig":"synthetic_B","end":292,"start":239,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":286,"start":244,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":199,"start":136,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":553,"start":493,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":735,"start":687,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1200,"start":1096,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":740,"start":707,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1294,"start":1223,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":614,"start":524,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1104,"start":1063,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1439,"start":1354,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1047,"start":997,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":287,"start":243,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":75}],"query_bed":[199,274],"query_length":75,"union_overlap_bases":75},"family":"stranded","fingerprint":"ababe3aeded933d080c27738a7a34d9bd3688da39855a6c4b61679ee65dd1ef8","group_id":"ababe3aeded933d080c27738a7a34d9bd3688da39855a6c4b61679ee65dd1ef8","id":"INTERVALS-0000273","index":273,"input":{"contigs":{"synthetic_A":1328,"synthetic_B":835},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":274,"start":199,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":274,"start":200,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":603,"start":600,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":95,"start":81,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":536,"start":447,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":516,"start":429,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":375,"start":287,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":334,"start":276,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":28,"start":27,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1022,"start":990,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":274,"start":199,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":70}],"query_bed":[307,377],"query_length":70,"union_overlap_bases":70},"family":"stranded","fingerprint":"3824a18288e10ddacd35e689efb7fac8b5640f92fbe1f8f5cd9f8802f166866f","group_id":"3824a18288e10ddacd35e689efb7fac8b5640f92fbe1f8f5cd9f8802f166866f","id":"INTERVALS-0000288","index":288,"input":{"contigs":{"synthetic_A":681,"synthetic_B":635},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":377,"start":307,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":377,"start":307,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":436,"start":322,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":561,"start":459,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":570,"start":493,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":476,"start":417,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":377,"start":307,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[824,880],"query_length":56,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"29148d1a519a8f104f333f526da89f42b5cdadb11f23b89c20d5663f155bfaa6","group_id":"29148d1a519a8f104f333f526da89f42b5cdadb11f23b89c20d5663f155bfaa6","id":"INTERVALS-0000305","index":305,"input":{"contigs":{"synthetic_A":1664,"synthetic_B":1619},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":824,"start":815,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":912,"start":880,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1101,"start":995,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":663,"start":614,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":305,"start":252,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1161,"start":1135,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":234,"start":184,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1327,"start":1218,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":880,"start":825,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":52},{"feature_index":1,"overlap_bases":50}],"query_bed":[607,659],"query_length":52,"union_overlap_bases":52},"family":"nested","fingerprint":"50150a0cab85250907de3ac2c2411fd4457979d05ff230f6d56fe7017a659a8e","group_id":"50150a0cab85250907de3ac2c2411fd4457979d05ff230f6d56fe7017a659a8e","id":"INTERVALS-0000306","index":306,"input":{"contigs":{"synthetic_A":1298,"synthetic_B":1644},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":664,"start":602,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":658,"start":609,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":726,"start":689,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1573,"start":1479,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":294,"start":179,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1338,"start":1294,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":717,"start":672,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":764,"start":721,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":659,"start":608,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":80},{"feature_index":1,"overlap_bases":78},{"feature_index":3,"overlap_bases":51}],"query_bed":[376,456],"query_length":80,"union_overlap_bases":80},"family":"nested","fingerprint":"11f1210c6ab7305364d0161f2ed0c2b9dcb79169d7b89a12eaafd46ba504c287","group_id":"11f1210c6ab7305364d0161f2ed0c2b9dcb79169d7b89a12eaafd46ba504c287","id":"INTERVALS-0000311","index":311,"input":{"contigs":{"synthetic_A":957,"synthetic_B":710},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":461,"start":371,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":455,"start":378,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":239,"start":231,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":427,"start":331,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":52,"start":17,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":69,"start":22,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":481,"start":365,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":55,"start":27,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":341,"start":278,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":295,"start":278,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":456,"start":376,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[413,418],"query_length":5,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"ab788e144765f015b6037002fdd9b30ba54ee67f2fd1b25ca383d9c0319d7271","group_id":"ab788e144765f015b6037002fdd9b30ba54ee67f2fd1b25ca383d9c0319d7271","id":"INTERVALS-0000315","index":315,"input":{"contigs":{"synthetic_A":830,"synthetic_B":1076},"features":[{"basis":"one_closed","contig":"synthetic_B","end":413,"start":413,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":422,"start":418,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":672,"start":583,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":407,"start":389,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":527,"start":447,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":113,"start":56,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":172,"start":165,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":178,"start":107,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":917,"start":909,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":119,"start":71,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":418,"start":413,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":44},{"feature_index":1,"overlap_bases":42}],"query_bed":[1264,1308],"query_length":44,"union_overlap_bases":44},"family":"nested","fingerprint":"be19be3a4d702988e86bf3408fc84459ef0a62a9100c3711602955d78011d42f","group_id":"be19be3a4d702988e86bf3408fc84459ef0a62a9100c3711602955d78011d42f","id":"INTERVALS-0000331","index":331,"input":{"contigs":{"synthetic_A":1239,"synthetic_B":1616},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1313,"start":1260,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1307,"start":1265,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":947,"start":861,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":900,"start":848,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":71,"start":52,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":449,"start":445,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":525,"start":418,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":194,"start":190,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1308,"start":1264,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":30}],"query_bed":[718,748],"query_length":30,"union_overlap_bases":30},"family":"coordinate_conversion","fingerprint":"2139fb0255afbfdba85355ef38e522f21a082ad45c76b934b018bc48ea40943c","group_id":"2139fb0255afbfdba85355ef38e522f21a082ad45c76b934b018bc48ea40943c","id":"INTERVALS-0000334","index":334,"input":{"contigs":{"synthetic_A":984,"synthetic_B":1286},"features":[{"basis":"one_closed","contig":"synthetic_A","end":748,"start":719,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1227,"start":1155,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":344,"start":279,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1045,"start":1037,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":790,"start":778,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":697,"start":602,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1208,"start":1164,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":80,"start":63,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":523,"start":482,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":772,"start":762,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":748,"start":719,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":61},{"feature_index":9,"overlap_bases":4}],"query_bed":[69,130],"query_length":61,"union_overlap_bases":61},"family":"stranded","fingerprint":"0540caa2d65e3fb2a6748615efe7cfd10f9ede3b5db9f12c8517170c2c5a4fa7","group_id":"0540caa2d65e3fb2a6748615efe7cfd10f9ede3b5db9f12c8517170c2c5a4fa7","id":"INTERVALS-0000343","index":343,"input":{"contigs":{"synthetic_A":1255,"synthetic_B":1692},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":130,"start":69,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":130,"start":70,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1134,"start":1072,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":531,"start":515,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":241,"start":187,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1258,"start":1242,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1297,"start":1200,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1313,"start":1244,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":746,"start":686,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":199,"start":126,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":439,"start":366,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":549,"start":465,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":130,"start":69,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":68},{"feature_index":2,"overlap_bases":2}],"query_bed":[858,927],"query_length":69,"union_overlap_bases":69},"family":"overlapping_blocks","fingerprint":"bd8cd380734223a4c3be8b5161b278f34796ba1cd80feac0ce296754b2b51ec0","group_id":"bd8cd380734223a4c3be8b5161b278f34796ba1cd80feac0ce296754b2b51ec0","id":"INTERVALS-0000352","index":352,"input":{"contigs":{"synthetic_A":1509,"synthetic_B":1272},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":861,"start":855,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":927,"start":859,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":930,"start":925,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":254,"start":231,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":354,"start":294,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":218,"start":121,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1117,"start":1083,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":177,"start":150,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":276,"start":250,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":360,"start":277,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":527,"start":467,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":927,"start":859,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":17}],"query_bed":[873,890],"query_length":17,"union_overlap_bases":17},"family":"coordinate_conversion","fingerprint":"1e74724e1ccd927309a786c256b6fef4159d7a8680e3413f4451a917cf924820","group_id":"1e74724e1ccd927309a786c256b6fef4159d7a8680e3413f4451a917cf924820","id":"INTERVALS-0000354","index":354,"input":{"contigs":{"synthetic_A":791,"synthetic_B":1097},"features":[{"basis":"one_closed","contig":"synthetic_B","end":890,"start":874,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":317,"start":237,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":240,"start":194,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":359,"start":288,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":259,"start":245,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":890,"start":874,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1413,1481],"query_length":68,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"de15ca58916f3bc1376e6a8c27914db251d83502dd922363a7dbdc3e09ff8cae","group_id":"de15ca58916f3bc1376e6a8c27914db251d83502dd922363a7dbdc3e09ff8cae","id":"INTERVALS-0000370","index":370,"input":{"contigs":{"synthetic_A":1762,"synthetic_B":687},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1413,"start":1404,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1489,"start":1482,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":582,"start":516,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":428,"start":370,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":127,"start":121,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":143,"start":61,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":279,"start":278,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":336,"start":249,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1481,"start":1413,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":33},{"feature_index":1,"overlap_bases":31},{"feature_index":5,"overlap_bases":30}],"query_bed":[105,138],"query_length":33,"union_overlap_bases":33},"family":"nested","fingerprint":"c087f81cb238907b377d1ffd9ec5830afcf295f7e5b5426e30f89637c83ce235","group_id":"c087f81cb238907b377d1ffd9ec5830afcf295f7e5b5426e30f89637c83ce235","id":"INTERVALS-0000371","index":371,"input":{"contigs":{"synthetic_A":1627,"synthetic_B":1522},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":143,"start":100,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":137,"start":106,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1205,"start":1144,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":339,"start":262,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1129,"start":1104,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":144,"start":108,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1283,"start":1279,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":91,"start":81,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":766,"start":683,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1422,"start":1323,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":235,"start":235,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":952,"start":873,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":138,"start":106,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":24},{"feature_index":2,"overlap_bases":2}],"query_bed":[170,195],"query_length":25,"union_overlap_bases":25},"family":"overlapping_blocks","fingerprint":"d12eeb7642d5c86eda035693276a60e09b0be8f01c79e1e2a32a30dde4a0a8db","group_id":"d12eeb7642d5c86eda035693276a60e09b0be8f01c79e1e2a32a30dde4a0a8db","id":"INTERVALS-0000387","index":387,"input":{"contigs":{"synthetic_A":1430,"synthetic_B":1482},"features":[{"basis":"one_closed","contig":"synthetic_A","end":173,"start":168,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":195,"start":171,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":198,"start":194,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1395,"start":1355,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":596,"start":541,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":917,"start":844,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":253,"start":134,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":909,"start":854,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":195,"start":170,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":65},{"feature_index":1,"overlap_bases":63}],"query_bed":[702,767],"query_length":65,"union_overlap_bases":65},"family":"nested","fingerprint":"58a38cac16f653995d6709b82d5e977284fab6a3810e65b2caf1afa32d6ddd81","group_id":"58a38cac16f653995d6709b82d5e977284fab6a3810e65b2caf1afa32d6ddd81","id":"INTERVALS-0000391","index":391,"input":{"contigs":{"synthetic_A":1747,"synthetic_B":1677},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":772,"start":697,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":766,"start":704,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":196,"start":165,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":181,"start":176,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1120,"start":1105,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":738,"start":737,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":767,"start":702,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":39}],"query_bed":[347,386],"query_length":39,"union_overlap_bases":39},"family":"coordinate_conversion","fingerprint":"c2d0b53c0b55e424995f8445b63e747dbe6a16037f97868864100701f9e24ff0","group_id":"c2d0b53c0b55e424995f8445b63e747dbe6a16037f97868864100701f9e24ff0","id":"INTERVALS-0000399","index":399,"input":{"contigs":{"synthetic_A":941,"synthetic_B":990},"features":[{"basis":"one_closed","contig":"synthetic_A","end":386,"start":348,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":174,"start":172,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":800,"start":706,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":628,"start":627,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":155,"start":128,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":640,"start":538,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":386,"start":348,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[776,842],"query_length":66,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"16cc288ee7b19322213ab2590c2ef930b61cc5a261b7a1515b8bc239065f8c76","group_id":"16cc288ee7b19322213ab2590c2ef930b61cc5a261b7a1515b8bc239065f8c76","id":"INTERVALS-0000415","index":415,"input":{"contigs":{"synthetic_A":1042,"synthetic_B":1293},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":776,"start":764,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":852,"start":843,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":911,"start":872,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":201,"start":102,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":641,"start":536,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":729,"start":614,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":815,"start":718,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1203,"start":1084,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1121,"start":1078,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":121,"start":12,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":842,"start":776,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":5}],"query_bed":[187,192],"query_length":5,"union_overlap_bases":5},"family":"coordinate_conversion","fingerprint":"f5cc92bc48abec456c21a10981cbc0d63a5b450b6b75c3fe7398593037383a20","group_id":"f5cc92bc48abec456c21a10981cbc0d63a5b450b6b75c3fe7398593037383a20","id":"INTERVALS-0000419","index":419,"input":{"contigs":{"synthetic_A":1389,"synthetic_B":1139},"features":[{"basis":"one_closed","contig":"synthetic_A","end":192,"start":188,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":826,"start":753,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":318,"start":246,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":333,"start":294,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":870,"start":863,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":535,"start":479,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":427,"start":421,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":192,"start":188,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[991,1015],"query_length":24,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"92a60704382dea540460fccd048f7ce36fc2a948d631fbfe94ca2cbf61f54eb2","group_id":"92a60704382dea540460fccd048f7ce36fc2a948d631fbfe94ca2cbf61f54eb2","id":"INTERVALS-0000430","index":430,"input":{"contigs":{"synthetic_A":1366,"synthetic_B":1259},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":991,"start":989,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1051,"start":1016,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":433,"start":329,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1181,"start":1131,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":828,"start":708,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":147,"start":33,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1262,"start":1160,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":144,"start":36,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1015,"start":991,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":80}],"query_bed":[126,206],"query_length":80,"union_overlap_bases":80},"family":"coordinate_conversion","fingerprint":"b54650d414139c8a319d3c496a73a506b6a972d1027bfc8ec655d414efe2c56e","group_id":"b54650d414139c8a319d3c496a73a506b6a972d1027bfc8ec655d414efe2c56e","id":"INTERVALS-0000434","index":434,"input":{"contigs":{"synthetic_A":940,"synthetic_B":1267},"features":[{"basis":"one_closed","contig":"synthetic_A","end":206,"start":127,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":841,"start":779,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":451,"start":352,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":495,"start":432,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":308,"start":224,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":206,"start":127,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[98,163],"query_length":65,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"ad0a18ecbf5987fb83bbbc568d0bd9ce77d2b5f450c0a3849532ee0d749f49f3","group_id":"ad0a18ecbf5987fb83bbbc568d0bd9ce77d2b5f450c0a3849532ee0d749f49f3","id":"INTERVALS-0000435","index":435,"input":{"contigs":{"synthetic_A":617,"synthetic_B":1213},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":98,"start":84,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":166,"start":163,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":247,"start":153,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":385,"start":289,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":163,"start":106,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":163,"start":99,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":17},{"feature_index":1,"overlap_bases":15}],"query_bed":[1462,1479],"query_length":17,"union_overlap_bases":17},"family":"nested","fingerprint":"d2b90f08be8032db6030cd89c154da0813c6fe4eaaa2974db2baafe52053cad1","group_id":"d2b90f08be8032db6030cd89c154da0813c6fe4eaaa2974db2baafe52053cad1","id":"INTERVALS-0000436","index":436,"input":{"contigs":{"synthetic_A":1718,"synthetic_B":1415},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1484,"start":1458,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1478,"start":1464,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":244,"start":141,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1083,"start":1046,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":791,"start":708,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1291,"start":1260,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":210,"start":148,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":849,"start":750,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1479,"start":1462,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":52},{"feature_index":2,"overlap_bases":2}],"query_bed":[482,535],"query_length":53,"union_overlap_bases":53},"family":"overlapping_blocks","fingerprint":"9ff87a04a06172a3f5e7ac06a937f17793c31f449d801a16d6781fc0774ff6e8","group_id":"9ff87a04a06172a3f5e7ac06a937f17793c31f449d801a16d6781fc0774ff6e8","id":"INTERVALS-0000462","index":462,"input":{"contigs":{"synthetic_A":685,"synthetic_B":766},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":485,"start":479,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":535,"start":484,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":538,"start":533,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":665,"start":552,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":277,"start":188,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":535,"start":482,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32}],"query_bed":[716,748],"query_length":32,"union_overlap_bases":32},"family":"coordinate_conversion","fingerprint":"bc245d606012e6e1aa39bc0e0371c1ac6cdcbe65fbe1ecd425599ab4ef0dd977","group_id":"bc245d606012e6e1aa39bc0e0371c1ac6cdcbe65fbe1ecd425599ab4ef0dd977","id":"INTERVALS-0000469","index":469,"input":{"contigs":{"synthetic_A":1290,"synthetic_B":876},"features":[{"basis":"one_closed","contig":"synthetic_A","end":748,"start":717,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":79,"start":37,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":592,"start":496,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":400,"start":313,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":228,"start":214,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":273,"start":185,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":310,"start":289,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":258,"start":178,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":964,"start":927,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":574,"start":518,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":731,"start":631,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":495,"start":397,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":748,"start":717,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":12},{"feature_index":1,"overlap_bases":10}],"query_bed":[51,63],"query_length":12,"union_overlap_bases":12},"family":"nested","fingerprint":"053e4f0c7f81f71af82b9328d0b8e3c629c73edb29c1c681d9cd9fe3e2ada711","group_id":"053e4f0c7f81f71af82b9328d0b8e3c629c73edb29c1c681d9cd9fe3e2ada711","id":"INTERVALS-0000491","index":491,"input":{"contigs":{"synthetic_A":1012,"synthetic_B":1148},"features":[{"basis":"one_closed","contig":"synthetic_B","end":68,"start":47,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":62,"start":52,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":532,"start":514,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":567,"start":544,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":270,"start":168,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":180,"start":120,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":451,"start":438,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":128,"start":82,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":63,"start":52,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":7}],"query_bed":[319,326],"query_length":7,"union_overlap_bases":7},"family":"stranded","fingerprint":"9a700aa2328e14b87bd7b18203bcb2a81a7035e2cffecf454b81abc9ee870e03","group_id":"9a700aa2328e14b87bd7b18203bcb2a81a7035e2cffecf454b81abc9ee870e03","id":"INTERVALS-0000503","index":503,"input":{"contigs":{"synthetic_A":1338,"synthetic_B":1735},"features":[{"basis":"one_closed","contig":"synthetic_B","end":326,"start":320,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":326,"start":320,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1285,"start":1252,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":876,"start":838,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1002,"start":920,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":680,"start":598,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":891,"start":834,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":962,"start":941,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":867,"start":772,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":295,"start":270,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":912,"start":840,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":671,"start":571,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":326,"start":320,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":33},{"feature_index":2,"overlap_bases":2}],"query_bed":[970,1004],"query_length":34,"union_overlap_bases":34},"family":"overlapping_blocks","fingerprint":"972b412250f0525812c8c3b92bb005d2642075340c4bfc4c2c28ec8d50b6d60d","group_id":"972b412250f0525812c8c3b92bb005d2642075340c4bfc4c2c28ec8d50b6d60d","id":"INTERVALS-0000507","index":507,"input":{"contigs":{"synthetic_A":1430,"synthetic_B":1177},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":973,"start":967,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1004,"start":972,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1007,"start":1003,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":300,"start":206,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":630,"start":604,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":787,"start":721,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":54,"start":15,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":494,"start":483,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":526,"start":423,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":127,"start":44,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1004,"start":971,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":66},{"feature_index":2,"overlap_bases":34}],"query_bed":[615,681],"query_length":66,"union_overlap_bases":66},"family":"coordinate_conversion","fingerprint":"4a7c808e7952f0e196c9f79467e2fa9d07312cc0b42af2c4ffaee67a1dad94d6","group_id":"4a7c808e7952f0e196c9f79467e2fa9d07312cc0b42af2c4ffaee67a1dad94d6","id":"INTERVALS-0000519","index":519,"input":{"contigs":{"synthetic_A":857,"synthetic_B":1680},"features":[{"basis":"one_closed","contig":"synthetic_A","end":681,"start":616,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":481,"start":477,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":649,"start":600,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":772,"start":738,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":162,"start":127,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1297,"start":1211,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":681,"start":616,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[794,805],"query_length":11,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"b8c65272b1647b294c73a76d042b3886d80630571e5252ea364d901173261b9b","group_id":"b8c65272b1647b294c73a76d042b3886d80630571e5252ea364d901173261b9b","id":"INTERVALS-0000530","index":530,"input":{"contigs":{"synthetic_A":1632,"synthetic_B":633},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":794,"start":788,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":821,"start":806,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":231,"start":199,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":370,"start":344,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":576,"start":509,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":805,"start":795,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":23},{"feature_index":1,"overlap_bases":21}],"query_bed":[491,514],"query_length":23,"union_overlap_bases":23},"family":"nested","fingerprint":"9f413aa6e389cc978ea267033f8da333f5809b173ef481f49461b560452ebc5e","group_id":"9f413aa6e389cc978ea267033f8da333f5809b173ef481f49461b560452ebc5e","id":"INTERVALS-0000536","index":536,"input":{"contigs":{"synthetic_A":937,"synthetic_B":937},"features":[{"basis":"one_closed","contig":"synthetic_B","end":519,"start":487,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":513,"start":492,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":49,"start":35,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":199,"start":105,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":879,"start":792,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":572,"start":467,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":898,"start":802,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":514,"start":492,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":76},{"feature_index":2,"overlap_bases":2},{"feature_index":3,"overlap_bases":68}],"query_bed":[256,333],"query_length":77,"union_overlap_bases":77},"family":"overlapping_blocks","fingerprint":"f14be0c67a1a88dbdf100b66cd77bc362203fac1de93c44b14fda52298f0f3ed","group_id":"f14be0c67a1a88dbdf100b66cd77bc362203fac1de93c44b14fda52298f0f3ed","id":"INTERVALS-0000537","index":537,"input":{"contigs":{"synthetic_A":982,"synthetic_B":802},"features":[{"basis":"one_closed","contig":"synthetic_A","end":259,"start":254,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":333,"start":257,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":336,"start":331,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":370,"start":265,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":339,"start":319,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":166,"start":103,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":728,"start":635,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":333,"start":257,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":62},{"feature_index":1,"overlap_bases":60},{"feature_index":5,"overlap_bases":38}],"query_bed":[362,424],"query_length":62,"union_overlap_bases":62},"family":"nested","fingerprint":"8bf9ea065b7d5066262c3411d385335ac5add8c444b33453c5e666f5891e768f","group_id":"8bf9ea065b7d5066262c3411d385335ac5add8c444b33453c5e666f5891e768f","id":"INTERVALS-0000541","index":541,"input":{"contigs":{"synthetic_A":1294,"synthetic_B":703},"features":[{"basis":"one_closed","contig":"synthetic_B","end":429,"start":358,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":423,"start":364,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":799,"start":750,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":897,"start":842,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1011,"start":997,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":400,"start":333,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1024,"start":1018,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":771,"start":694,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":434,"start":368,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":424,"start":362,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":64},{"feature_index":5,"overlap_bases":10}],"query_bed":[476,540],"query_length":64,"union_overlap_bases":64},"family":"coordinate_conversion","fingerprint":"bdfb48382261cc1c1124e5f8e9f77616e365dc2cb645a6399c2214edb3078bc7","group_id":"bdfb48382261cc1c1124e5f8e9f77616e365dc2cb645a6399c2214edb3078bc7","id":"INTERVALS-0000544","index":544,"input":{"contigs":{"synthetic_A":1695,"synthetic_B":765},"features":[{"basis":"one_closed","contig":"synthetic_A","end":540,"start":477,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":181,"start":173,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":515,"start":464,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":935,"start":854,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1532,"start":1508,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":544,"start":531,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1335,"start":1305,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":818,"start":759,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1035,"start":1016,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":129,"start":107,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":599,"start":517,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":540,"start":477,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[547,608],"query_length":61,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"9172388a9fccffa0983cd0162868b7037cbf0585e695685e6283ba07565f11cf","group_id":"9172388a9fccffa0983cd0162868b7037cbf0585e695685e6283ba07565f11cf","id":"INTERVALS-0000555","index":555,"input":{"contigs":{"synthetic_A":802,"synthetic_B":1760},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":547,"start":534,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":633,"start":609,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":735,"start":687,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":281,"start":207,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":985,"start":907,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":728,"start":637,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":607,"start":567,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":283,"start":235,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":713,"start":647,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":299,"start":197,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":591,"start":534,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":608,"start":547,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":50},{"feature_index":1,"overlap_bases":48}],"query_bed":[476,526],"query_length":50,"union_overlap_bases":50},"family":"nested","fingerprint":"0af4c1884025d60a91afb51206712adde60e939d21dea307665ea58888253e2c","group_id":"0af4c1884025d60a91afb51206712adde60e939d21dea307665ea58888253e2c","id":"INTERVALS-0000556","index":556,"input":{"contigs":{"synthetic_A":1148,"synthetic_B":1633},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":531,"start":471,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":525,"start":478,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":735,"start":709,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1484,"start":1442,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":685,"start":583,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":448,"start":425,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":71,"start":44,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1366,"start":1336,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":585,"start":521,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":581,"start":527,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":526,"start":477,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":73}],"query_bed":[216,289],"query_length":73,"union_overlap_bases":73},"family":"stranded","fingerprint":"f17693de0dad3abb185b07b6970e67ca0ca4f49a8e50c6bd931127d31e1e53df","group_id":"f17693de0dad3abb185b07b6970e67ca0ca4f49a8e50c6bd931127d31e1e53df","id":"INTERVALS-0000558","index":558,"input":{"contigs":{"synthetic_A":1661,"synthetic_B":1144},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":289,"start":216,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":289,"start":216,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":173,"start":104,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":619,"start":611,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":780,"start":732,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":873,"start":854,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":289,"start":217,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":15},{"feature_index":2,"overlap_bases":2}],"query_bed":[629,645],"query_length":16,"union_overlap_bases":16},"family":"overlapping_blocks","fingerprint":"94cc4f348273161edd8cf85b58b566964ff5bc85c61e22ac3226d863dbe0bcae","group_id":"94cc4f348273161edd8cf85b58b566964ff5bc85c61e22ac3226d863dbe0bcae","id":"INTERVALS-0000562","index":562,"input":{"contigs":{"synthetic_A":1707,"synthetic_B":1392},"features":[{"basis":"one_closed","contig":"synthetic_B","end":632,"start":627,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":645,"start":630,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":648,"start":644,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":982,"start":954,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":286,"start":179,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":990,"start":878,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":940,"start":838,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":360,"start":260,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":557,"start":502,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1171,"start":1062,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":782,"start":775,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":645,"start":630,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[238,307],"query_length":69,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"b0a78c96f5bcb3688990ff22b14d0b0290376250fbc595fe253470fb4ac98bda","group_id":"b0a78c96f5bcb3688990ff22b14d0b0290376250fbc595fe253470fb4ac98bda","id":"INTERVALS-0000575","index":575,"input":{"contigs":{"synthetic_A":1125,"synthetic_B":958},"features":[{"basis":"one_closed","contig":"synthetic_B","end":238,"start":220,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":316,"start":308,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":814,"start":709,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":808,"start":789,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":724,"start":661,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":631,"start":591,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":707,"start":707,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":765,"start":731,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":287,"start":180,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":383,"start":307,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":936,"start":825,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":307,"start":238,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":26},{"feature_index":2,"overlap_bases":2}],"query_bed":[442,469],"query_length":27,"union_overlap_bases":27},"family":"overlapping_blocks","fingerprint":"ca6f55e6a75daa15fd026af7ada8a87745b8bf36541dfaccea7eaebdb6f08fb1","group_id":"ca6f55e6a75daa15fd026af7ada8a87745b8bf36541dfaccea7eaebdb6f08fb1","id":"INTERVALS-0000582","index":582,"input":{"contigs":{"synthetic_A":1709,"synthetic_B":1303},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":445,"start":439,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":469,"start":443,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":472,"start":468,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":830,"start":761,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":395,"start":353,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":635,"start":624,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":469,"start":443,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":75}],"query_bed":[828,903],"query_length":75,"union_overlap_bases":75},"family":"stranded","fingerprint":"2782ed84a4da436f850ffd22846603313c648ad759e75c3b70f489b281ca11f2","group_id":"2782ed84a4da436f850ffd22846603313c648ad759e75c3b70f489b281ca11f2","id":"INTERVALS-0000593","index":593,"input":{"contigs":{"synthetic_A":1755,"synthetic_B":1314},"features":[{"basis":"one_closed","contig":"synthetic_A","end":903,"start":829,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":903,"start":828,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":557,"start":505,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":285,"start":259,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":952,"start":947,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":336,"start":300,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":903,"start":828,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":70},{"feature_index":3,"overlap_bases":68}],"query_bed":[409,479],"query_length":70,"union_overlap_bases":70},"family":"coordinate_conversion","fingerprint":"53a8eb1643cf743abbdb470d62688398e4bb7926606ffbef00763b435c85804c","group_id":"53a8eb1643cf743abbdb470d62688398e4bb7926606ffbef00763b435c85804c","id":"INTERVALS-0000599","index":599,"input":{"contigs":{"synthetic_A":953,"synthetic_B":1585},"features":[{"basis":"one_closed","contig":"synthetic_B","end":479,"start":410,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":104,"start":7,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":750,"start":666,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":500,"start":412,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":503,"start":406,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":479,"start":410,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":8,"overlap_bases":19}],"query_bed":[870,889],"query_length":19,"union_overlap_bases":19},"family":"touching_boundary","fingerprint":"8e7558746638f1c2137ccd9fdea66051b4dec83a0ea3d3d27e206cf830d8cd5e","group_id":"8e7558746638f1c2137ccd9fdea66051b4dec83a0ea3d3d27e206cf830d8cd5e","id":"INTERVALS-0000600","index":600,"input":{"contigs":{"synthetic_A":790,"synthetic_B":1519},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":870,"start":853,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":909,"start":890,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":325,"start":239,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":800,"start":736,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":671,"start":551,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":404,"start":373,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":623,"start":620,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":679,"start":636,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":929,"start":840,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":889,"start":870,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":48}],"query_bed":[557,605],"query_length":48,"union_overlap_bases":48},"family":"coordinate_conversion","fingerprint":"9dded7364499a7108cf50e48639fc268b03298921ffec5b6e89fb7ee14076c1a","group_id":"9dded7364499a7108cf50e48639fc268b03298921ffec5b6e89fb7ee14076c1a","id":"INTERVALS-0000604","index":604,"input":{"contigs":{"synthetic_A":1440,"synthetic_B":660},"features":[{"basis":"one_closed","contig":"synthetic_A","end":605,"start":558,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":62,"start":16,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":562,"start":450,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":498,"start":416,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":509,"start":498,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":302,"start":227,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":569,"start":527,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":377,"start":295,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1003,"start":952,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1361,"start":1316,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":799,"start":685,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":605,"start":558,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":9,"overlap_bases":25}],"query_bed":[332,357],"query_length":25,"union_overlap_bases":25},"family":"touching_boundary","fingerprint":"8477582c083d189f605304c9ec3c5b89549dfd785154541f8ec2fed0dc33729a","group_id":"8477582c083d189f605304c9ec3c5b89549dfd785154541f8ec2fed0dc33729a","id":"INTERVALS-0000610","index":610,"input":{"contigs":{"synthetic_A":612,"synthetic_B":1065},"features":[{"basis":"one_closed","contig":"synthetic_A","end":332,"start":332,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":365,"start":358,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":175,"start":147,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":357,"start":303,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":191,"start":82,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":244,"start":144,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":757,"start":737,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":244,"start":133,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":687,"start":669,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":375,"start":304,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":239,"start":234,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":708,"start":657,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":357,"start":333,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":57},{"feature_index":2,"overlap_bases":2},{"feature_index":6,"overlap_bases":23}],"query_bed":[211,269],"query_length":58,"union_overlap_bases":58},"family":"overlapping_blocks","fingerprint":"a1795ca40017c59131692ec65acf69fbb15aa607633d9b65c6c750c62b8c6049","group_id":"a1795ca40017c59131692ec65acf69fbb15aa607633d9b65c6c750c62b8c6049","id":"INTERVALS-0000627","index":627,"input":{"contigs":{"synthetic_A":654,"synthetic_B":659},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":214,"start":208,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":269,"start":213,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":272,"start":268,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":149,"start":42,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":533,"start":456,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":137,"start":98,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":323,"start":246,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":294,"start":278,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":631,"start":514,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":281,"start":173,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":269,"start":211,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[486,503],"query_length":17,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"a6cc0c10276bf325ef3c3f3605f4cef0c4cdd3e70f772fd39b43c6a69608ae98","group_id":"a6cc0c10276bf325ef3c3f3605f4cef0c4cdd3e70f772fd39b43c6a69608ae98","id":"INTERVALS-0000630","index":630,"input":{"contigs":{"synthetic_A":1344,"synthetic_B":1723},"features":[{"basis":"one_closed","contig":"synthetic_A","end":486,"start":481,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":512,"start":504,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":811,"start":775,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":937,"start":850,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":722,"start":626,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1139,"start":1087,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":503,"start":486,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":45}],"query_bed":[1315,1360],"query_length":45,"union_overlap_bases":45},"family":"coordinate_conversion","fingerprint":"a9ac1a10c5ab95eda02406e29a513ee92b461f8926f5f86296e4c50972d8f3a6","group_id":"a9ac1a10c5ab95eda02406e29a513ee92b461f8926f5f86296e4c50972d8f3a6","id":"INTERVALS-0000634","index":634,"input":{"contigs":{"synthetic_A":1293,"synthetic_B":1539},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1360,"start":1316,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":357,"start":266,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":860,"start":751,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":163,"start":82,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":914,"start":854,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":426,"start":353,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":608,"start":527,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1360,"start":1316,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":26},{"feature_index":2,"overlap_bases":2}],"query_bed":[335,362],"query_length":27,"union_overlap_bases":27},"family":"overlapping_blocks","fingerprint":"300c344c93b578fe4663c5d3559cc1395c7a2e8a5754c86c812effc6f81716fe","group_id":"300c344c93b578fe4663c5d3559cc1395c7a2e8a5754c86c812effc6f81716fe","id":"INTERVALS-0000637","index":637,"input":{"contigs":{"synthetic_A":1320,"synthetic_B":611},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":338,"start":332,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":362,"start":336,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":365,"start":360,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":226,"start":170,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":740,"start":698,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":523,"start":438,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":494,"start":477,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":790,"start":677,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":518,"start":452,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1177,"start":1076,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":626,"start":586,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":321,"start":297,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":362,"start":335,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":37},{"feature_index":3,"overlap_bases":24}],"query_bed":[811,848],"query_length":37,"union_overlap_bases":37},"family":"stranded","fingerprint":"ca5e629a7cd1b751416f97a0948fd5154843adc36a07533eaf93875d68caea28","group_id":"ca5e629a7cd1b751416f97a0948fd5154843adc36a07533eaf93875d68caea28","id":"INTERVALS-0000643","index":643,"input":{"contigs":{"synthetic_A":1401,"synthetic_B":1162},"features":[{"basis":"one_closed","contig":"synthetic_B","end":848,"start":812,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":848,"start":812,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":370,"start":336,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":924,"start":825,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":96,"start":60,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1029,"start":919,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1240,"start":1187,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":848,"start":812,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":45},{"feature_index":1,"overlap_bases":43}],"query_bed":[137,182],"query_length":45,"union_overlap_bases":45},"family":"nested","fingerprint":"f97bdfe4aef126ebf29ff3066d9c964dbb2b79fddb0eb030707748d6fa6f09b1","group_id":"f97bdfe4aef126ebf29ff3066d9c964dbb2b79fddb0eb030707748d6fa6f09b1","id":"INTERVALS-0000646","index":646,"input":{"contigs":{"synthetic_A":1682,"synthetic_B":1582},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":187,"start":132,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":181,"start":139,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":318,"start":282,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":197,"start":188,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":458,"start":409,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1059,"start":1044,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":593,"start":578,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":808,"start":774,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1376,"start":1345,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":692,"start":623,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":119,"start":104,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1015,"start":923,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":182,"start":138,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":39},{"feature_index":2,"overlap_bases":2}],"query_bed":[359,399],"query_length":40,"union_overlap_bases":40},"family":"overlapping_blocks","fingerprint":"969ecdc8564b1301080cd1b81c92f34dbce7de360fc4860168965d3183c3a72c","group_id":"969ecdc8564b1301080cd1b81c92f34dbce7de360fc4860168965d3183c3a72c","id":"INTERVALS-0000657","index":657,"input":{"contigs":{"synthetic_A":1214,"synthetic_B":1757},"features":[{"basis":"one_closed","contig":"synthetic_A","end":362,"start":357,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":399,"start":361,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":402,"start":397,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":331,"start":235,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":549,"start":498,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1329,"start":1215,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1651,"start":1607,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":652,"start":611,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":399,"start":360,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":54},{"feature_index":2,"overlap_bases":2}],"query_bed":[1100,1155],"query_length":55,"union_overlap_bases":55},"family":"overlapping_blocks","fingerprint":"5f96c88a08af72a0fc8a82894b4eb0bec4531c0720193a740ed2c632cc10e31e","group_id":"5f96c88a08af72a0fc8a82894b4eb0bec4531c0720193a740ed2c632cc10e31e","id":"INTERVALS-0000667","index":667,"input":{"contigs":{"synthetic_A":1670,"synthetic_B":1000},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1103,"start":1098,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1155,"start":1102,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1158,"start":1154,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1236,"start":1179,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":615,"start":578,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":392,"start":389,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":522,"start":481,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1452,"start":1351,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":790,"start":716,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1155,"start":1100,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":69},{"feature_index":2,"overlap_bases":2}],"query_bed":[262,332],"query_length":70,"union_overlap_bases":70},"family":"overlapping_blocks","fingerprint":"bfec5f24ad54195e64c864a212890f46a62d228e03ee66e0bddb489fc46ddda6","group_id":"bfec5f24ad54195e64c864a212890f46a62d228e03ee66e0bddb489fc46ddda6","id":"INTERVALS-0000682","index":682,"input":{"contigs":{"synthetic_A":1428,"synthetic_B":1424},"features":[{"basis":"one_closed","contig":"synthetic_B","end":265,"start":260,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":332,"start":264,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":335,"start":331,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1278,"start":1276,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":384,"start":267,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":669,"start":587,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":298,"start":229,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":828,"start":809,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":425,"start":344,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1037,"start":1030,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":366,"start":268,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":332,"start":263,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":4,"overlap_bases":25}],"query_bed":[78,123],"query_length":45,"union_overlap_bases":25},"family":"touching_boundary","fingerprint":"55b0bf1a93ca669539bfdc3cf7ea1c9656a94ef44f6e659dee582a74a499681e","group_id":"55b0bf1a93ca669539bfdc3cf7ea1c9656a94ef44f6e659dee582a74a499681e","id":"INTERVALS-0000685","index":685,"input":{"contigs":{"synthetic_A":751,"synthetic_B":1314},"features":[{"basis":"one_closed","contig":"synthetic_A","end":78,"start":71,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":155,"start":124,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":668,"start":635,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":329,"start":288,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":103,"start":37,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":534,"start":504,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":746,"start":656,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":123,"start":79,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":51},{"feature_index":2,"overlap_bases":2}],"query_bed":[664,716],"query_length":52,"union_overlap_bases":52},"family":"overlapping_blocks","fingerprint":"bba13156bbe052a711b159e7c804b1d96eebce1e77d002556325dbc5fd50a4e3","group_id":"bba13156bbe052a711b159e7c804b1d96eebce1e77d002556325dbc5fd50a4e3","id":"INTERVALS-0000687","index":687,"input":{"contigs":{"synthetic_A":1165,"synthetic_B":1017},"features":[{"basis":"one_closed","contig":"synthetic_A","end":667,"start":662,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":716,"start":666,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":719,"start":715,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":240,"start":125,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":353,"start":273,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1019,"start":1008,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":667,"start":596,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":451,"start":348,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":305,"start":210,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":504,"start":400,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":387,"start":376,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":716,"start":664,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":78},{"feature_index":1,"overlap_bases":76},{"feature_index":11,"overlap_bases":78}],"query_bed":[590,668],"query_length":78,"union_overlap_bases":78},"family":"nested","fingerprint":"cd01eb8e6468d60c285c43a97737dfe970b691fce99ab3012b1fd49938d6ee57","group_id":"cd01eb8e6468d60c285c43a97737dfe970b691fce99ab3012b1fd49938d6ee57","id":"INTERVALS-0000691","index":691,"input":{"contigs":{"synthetic_A":1504,"synthetic_B":1443},"features":[{"basis":"one_closed","contig":"synthetic_B","end":673,"start":586,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":667,"start":592,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1024,"start":993,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":405,"start":329,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1186,"start":1110,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1466,"start":1374,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":568,"start":525,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":702,"start":616,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1138,"start":1120,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":271,"start":156,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":745,"start":722,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":693,"start":591,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":668,"start":591,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[627,669],"query_length":42,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"2c05f9e692c6a98b4e0c8c8ff23fb08d616f28a7bd7ca9070f7b4c32cadab41a","group_id":"2c05f9e692c6a98b4e0c8c8ff23fb08d616f28a7bd7ca9070f7b4c32cadab41a","id":"INTERVALS-0000695","index":695,"input":{"contigs":{"synthetic_A":1218,"synthetic_B":1139},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":627,"start":615,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":708,"start":669,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":860,"start":783,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":966,"start":933,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":218,"start":207,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":855,"start":739,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1071,"start":1059,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":486,"start":372,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":503,"start":445,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":214,"start":173,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":715,"start":689,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":331,"start":242,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":669,"start":628,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[926,932],"query_length":6,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"7ebfb1aec76e0eca0f112a881517a540751328953bb206351681b0ded434b3be","group_id":"7ebfb1aec76e0eca0f112a881517a540751328953bb206351681b0ded434b3be","id":"INTERVALS-0000700","index":700,"input":{"contigs":{"synthetic_A":1454,"synthetic_B":1184},"features":[{"basis":"one_closed","contig":"synthetic_A","end":926,"start":909,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":947,"start":933,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":286,"start":249,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":897,"start":866,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":643,"start":578,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":670,"start":572,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":781,"start":753,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1363,"start":1306,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":778,"start":675,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1391,"start":1283,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":401,"start":289,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":932,"start":926,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":57},{"feature_index":1,"overlap_bases":55}],"query_bed":[594,651],"query_length":57,"union_overlap_bases":57},"family":"nested","fingerprint":"7688c05cccb7c7070bf6e27d52d0a1bd1038ce4acb9aa7681d832d1d041de7a1","group_id":"7688c05cccb7c7070bf6e27d52d0a1bd1038ce4acb9aa7681d832d1d041de7a1","id":"INTERVALS-0000701","index":701,"input":{"contigs":{"synthetic_A":818,"synthetic_B":1161},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":656,"start":589,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":650,"start":596,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":987,"start":876,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":207,"start":145,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":314,"start":196,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":376,"start":305,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":411,"start":365,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":325,"start":321,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":651,"start":595,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":5,"overlap_bases":38},{"feature_index":7,"overlap_bases":9}],"query_bed":[278,350],"query_length":72,"union_overlap_bases":38},"family":"touching_boundary","fingerprint":"d397707cd36a3eb004e5120dc2edfa7c53b2013ddb8a5b93c031469ec9a0cbfa","group_id":"d397707cd36a3eb004e5120dc2edfa7c53b2013ddb8a5b93c031469ec9a0cbfa","id":"INTERVALS-0000715","index":715,"input":{"contigs":{"synthetic_A":812,"synthetic_B":752},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":278,"start":269,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":359,"start":351,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":267,"start":197,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":301,"start":184,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":205,"start":87,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":357,"start":313,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":290,"start":211,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":461,"start":342,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":100,"start":25,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":112,"start":59,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":187,"start":83,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":350,"start":278,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":65},{"feature_index":1,"overlap_bases":63}],"query_bed":[395,460],"query_length":65,"union_overlap_bases":65},"family":"nested","fingerprint":"6f864dbacbe9c73dc04bb10690c205d8d04911158a101bf08d29979886170233","group_id":"6f864dbacbe9c73dc04bb10690c205d8d04911158a101bf08d29979886170233","id":"INTERVALS-0000716","index":716,"input":{"contigs":{"synthetic_A":836,"synthetic_B":1152},"features":[{"basis":"one_closed","contig":"synthetic_B","end":465,"start":391,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":459,"start":396,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":360,"start":283,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":657,"start":655,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":673,"start":622,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":248,"start":180,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1048,"start":947,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":229,"start":121,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":460,"start":395,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[195,258],"query_length":63,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"5f84a0d85944feffed1e319899862d52e7e5b7ddb41e66a511610ec866ef317b","group_id":"5f84a0d85944feffed1e319899862d52e7e5b7ddb41e66a511610ec866ef317b","id":"INTERVALS-0000725","index":725,"input":{"contigs":{"synthetic_A":1505,"synthetic_B":878},"features":[{"basis":"one_closed","contig":"synthetic_B","end":195,"start":176,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":262,"start":259,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":922,"start":815,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1160,"start":1133,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":685,"start":642,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":258,"start":196,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":64},{"feature_index":6,"overlap_bases":23}],"query_bed":[135,199],"query_length":64,"union_overlap_bases":64},"family":"coordinate_conversion","fingerprint":"d69c795c69998aee2eb52d4432407cc7f02024690e45f70bddca138c8f262542","group_id":"d69c795c69998aee2eb52d4432407cc7f02024690e45f70bddca138c8f262542","id":"INTERVALS-0000729","index":729,"input":{"contigs":{"synthetic_A":1220,"synthetic_B":1522},"features":[{"basis":"one_closed","contig":"synthetic_B","end":199,"start":136,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":783,"start":724,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":786,"start":748,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1017,"start":1006,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":515,"start":492,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":421,"start":346,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":270,"start":177,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":199,"start":136,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":72},{"feature_index":7,"overlap_bases":72}],"query_bed":[65,137],"query_length":72,"union_overlap_bases":72},"family":"coordinate_conversion","fingerprint":"0bc65c529075d41583ae84b5f0c87551928df0df77b6d669df1591fafc23f5fa","group_id":"0bc65c529075d41583ae84b5f0c87551928df0df77b6d669df1591fafc23f5fa","id":"INTERVALS-0000744","index":744,"input":{"contigs":{"synthetic_A":1726,"synthetic_B":1162},"features":[{"basis":"one_closed","contig":"synthetic_B","end":137,"start":66,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":625,"start":524,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1356,"start":1252,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":428,"start":370,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":188,"start":147,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":278,"start":248,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":124,"start":104,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":162,"start":49,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":933,"start":839,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":818,"start":714,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1436,"start":1338,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":433,"start":361,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":137,"start":66,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":67}],"query_bed":[715,782],"query_length":67,"union_overlap_bases":67},"family":"coordinate_conversion","fingerprint":"2ff6d9f891f01f5a95214895ca5f2476fce67f70f703c7fcf3ff3266e890e26f","group_id":"2ff6d9f891f01f5a95214895ca5f2476fce67f70f703c7fcf3ff3266e890e26f","id":"INTERVALS-0000769","index":769,"input":{"contigs":{"synthetic_A":1112,"synthetic_B":665},"features":[{"basis":"one_closed","contig":"synthetic_A","end":782,"start":716,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":676,"start":634,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":159,"start":78,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":322,"start":322,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":238,"start":167,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":222,"start":164,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":329,"start":310,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":580,"start":524,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1031,"start":935,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":188,"start":183,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":72,"start":54,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":452,"start":380,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":782,"start":716,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":12},{"feature_index":2,"overlap_bases":2}],"query_bed":[693,706],"query_length":13,"union_overlap_bases":13},"family":"overlapping_blocks","fingerprint":"c1e1aba463821e987fd0eb653ca126ac0ffb8be954f856269cd178818f42a93f","group_id":"c1e1aba463821e987fd0eb653ca126ac0ffb8be954f856269cd178818f42a93f","id":"INTERVALS-0000787","index":787,"input":{"contigs":{"synthetic_A":1606,"synthetic_B":1489},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":696,"start":690,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":706,"start":695,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":709,"start":704,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":290,"start":230,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1423,"start":1404,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":983,"start":970,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":92,"start":23,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":706,"start":694,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":69},{"feature_index":1,"overlap_bases":67},{"feature_index":3,"overlap_bases":41},{"feature_index":4,"overlap_bases":4}],"query_bed":[732,801],"query_length":69,"union_overlap_bases":69},"family":"nested","fingerprint":"23a2838c8df7fe36c2fc7264c4a5bdf8b741a50f88bac896976eb7a2bd22b8a0","group_id":"23a2838c8df7fe36c2fc7264c4a5bdf8b741a50f88bac896976eb7a2bd22b8a0","id":"INTERVALS-0000796","index":796,"input":{"contigs":{"synthetic_A":1558,"synthetic_B":1433},"features":[{"basis":"one_closed","contig":"synthetic_A","end":806,"start":728,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":800,"start":733,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":878,"start":878,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":773,"start":672,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":800,"start":796,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":315,"start":244,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":785,"start":776,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":532,"start":504,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":767,"start":652,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":606,"start":525,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":801,"start":732,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18}],"query_bed":[1504,1522],"query_length":18,"union_overlap_bases":18},"family":"stranded","fingerprint":"9fa6ff80fef59169f4debe4ce8abffc59f2b83d3e8843707be75fe429a95a292","group_id":"9fa6ff80fef59169f4debe4ce8abffc59f2b83d3e8843707be75fe429a95a292","id":"INTERVALS-0000803","index":803,"input":{"contigs":{"synthetic_A":850,"synthetic_B":1765},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1522,"start":1505,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1522,"start":1504,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":466,"start":390,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":360,"start":290,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":209,"start":149,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":139,"start":106,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":929,"start":846,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1522,"start":1505,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":78},{"feature_index":2,"overlap_bases":2}],"query_bed":[236,315],"query_length":79,"union_overlap_bases":79},"family":"overlapping_blocks","fingerprint":"a78412b01e8965dbef8351078a71e33d33abcee66eb083e7d71aba42fb46e150","group_id":"a78412b01e8965dbef8351078a71e33d33abcee66eb083e7d71aba42fb46e150","id":"INTERVALS-0000807","index":807,"input":{"contigs":{"synthetic_A":1617,"synthetic_B":1240},"features":[{"basis":"one_closed","contig":"synthetic_B","end":239,"start":234,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":315,"start":238,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":318,"start":313,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1139,"start":1087,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":968,"start":916,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":150,"start":61,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1377,"start":1342,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":646,"start":596,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1451,"start":1442,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":805,"start":713,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":919,"start":810,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":52,"start":1,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":315,"start":236,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[140,194],"query_length":54,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"c7ab62fa230c9e16a3487806ecbd0bbc7c7de4789bdfeefcebf68f878ca23e1f","group_id":"c7ab62fa230c9e16a3487806ecbd0bbc7c7de4789bdfeefcebf68f878ca23e1f","id":"INTERVALS-0000820","index":820,"input":{"contigs":{"synthetic_A":773,"synthetic_B":1672},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":140,"start":135,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":205,"start":194,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":198,"start":125,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":675,"start":569,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":896,"start":833,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":194,"start":140,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":22}],"query_bed":[433,455],"query_length":22,"union_overlap_bases":22},"family":"stranded","fingerprint":"36d8b0cad78b1f69de2fc79756694202d4b57e0e0f115bb36101c84952f0725d","group_id":"36d8b0cad78b1f69de2fc79756694202d4b57e0e0f115bb36101c84952f0725d","id":"INTERVALS-0000828","index":828,"input":{"contigs":{"synthetic_A":1383,"synthetic_B":986},"features":[{"basis":"one_closed","contig":"synthetic_B","end":455,"start":434,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":455,"start":433,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":753,"start":746,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":908,"start":867,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1093,"start":1032,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":948,"start":944,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":903,"start":901,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1122,"start":1103,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":424,"start":307,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":353,"start":274,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":553,"start":512,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":826,"start":818,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":455,"start":433,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":76},{"feature_index":2,"overlap_bases":2}],"query_bed":[38,115],"query_length":77,"union_overlap_bases":77},"family":"overlapping_blocks","fingerprint":"52e189909129c0f1de8b4f54d825db9bb60ea8bfb3f224aef4116b9687746432","group_id":"52e189909129c0f1de8b4f54d825db9bb60ea8bfb3f224aef4116b9687746432","id":"INTERVALS-0000832","index":832,"input":{"contigs":{"synthetic_A":1491,"synthetic_B":934},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":41,"start":35,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":115,"start":40,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":118,"start":114,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1106,"start":1065,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":706,"start":619,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":372,"start":368,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":644,"start":594,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":115,"start":39,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[598,652],"query_length":54,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"4e1d5d3ab19169464a77fe37005c4b7394ddc02db8baedc1aeb9ad19dfbc0f44","group_id":"4e1d5d3ab19169464a77fe37005c4b7394ddc02db8baedc1aeb9ad19dfbc0f44","id":"INTERVALS-0000835","index":835,"input":{"contigs":{"synthetic_A":1517,"synthetic_B":963},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":598,"start":591,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":670,"start":653,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":274,"start":269,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":915,"start":822,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":707,"start":606,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":652,"start":599,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":57},{"feature_index":2,"overlap_bases":2}],"query_bed":[599,657],"query_length":58,"union_overlap_bases":58},"family":"overlapping_blocks","fingerprint":"434498a68c2a3d0012b0052c1b184d6b81e587cf01b1640c30c065a17bebb009","group_id":"434498a68c2a3d0012b0052c1b184d6b81e587cf01b1640c30c065a17bebb009","id":"INTERVALS-0000842","index":842,"input":{"contigs":{"synthetic_A":1099,"synthetic_B":1031},"features":[{"basis":"one_closed","contig":"synthetic_B","end":602,"start":597,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":657,"start":600,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":660,"start":656,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":887,"start":872,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1044,"start":941,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":657,"start":616,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":779,"start":720,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":263,"start":189,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1037,"start":938,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":939,"start":858,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":875,"start":864,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":657,"start":599,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":9}],"query_bed":[157,166],"query_length":9,"union_overlap_bases":9},"family":"coordinate_conversion","fingerprint":"4f801d66f6bf0aff5c5e470ca3cbaada50fff33d754c59bc80ea643456d7f9f7","group_id":"4f801d66f6bf0aff5c5e470ca3cbaada50fff33d754c59bc80ea643456d7f9f7","id":"INTERVALS-0000844","index":844,"input":{"contigs":{"synthetic_A":1019,"synthetic_B":1210},"features":[{"basis":"one_closed","contig":"synthetic_A","end":166,"start":158,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":593,"start":563,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":475,"start":452,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":921,"start":838,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":323,"start":234,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":166,"start":158,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":4,"overlap_bases":10}],"query_bed":[341,351],"query_length":10,"union_overlap_bases":10},"family":"touching_boundary","fingerprint":"1ce759aa642adf423165c2c8fa77fad31f943f77aff515fe624854e5fd4b5364","group_id":"1ce759aa642adf423165c2c8fa77fad31f943f77aff515fe624854e5fd4b5364","id":"INTERVALS-0000870","index":870,"input":{"contigs":{"synthetic_A":851,"synthetic_B":613},"features":[{"basis":"one_closed","contig":"synthetic_B","end":341,"start":323,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":390,"start":351,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":458,"start":399,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":95,"start":11,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":384,"start":326,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":149,"start":63,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":607,"start":525,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":351,"start":341,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":42}],"query_bed":[487,529],"query_length":42,"union_overlap_bases":42},"family":"stranded","fingerprint":"29be21227c2d112933b7e8abc9399cd48726352f10f2296620e499258adbbaa5","group_id":"29be21227c2d112933b7e8abc9399cd48726352f10f2296620e499258adbbaa5","id":"INTERVALS-0000873","index":873,"input":{"contigs":{"synthetic_A":1651,"synthetic_B":1438},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":529,"start":487,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":529,"start":487,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":561,"start":453,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":342,"start":317,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":542,"start":433,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1057,"start":956,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":854,"start":764,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1542,"start":1455,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":826,"start":797,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1065,"start":980,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":812,"start":747,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":529,"start":488,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":34}],"query_bed":[681,715],"query_length":34,"union_overlap_bases":34},"family":"coordinate_conversion","fingerprint":"38296a3c5259cea4a22d3a46dd1e1e7ad27008a43de865c84b3adf93e8c9d464","group_id":"38296a3c5259cea4a22d3a46dd1e1e7ad27008a43de865c84b3adf93e8c9d464","id":"INTERVALS-0000879","index":879,"input":{"contigs":{"synthetic_A":1742,"synthetic_B":1209},"features":[{"basis":"one_closed","contig":"synthetic_B","end":715,"start":682,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":602,"start":554,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":527,"start":464,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":540,"start":438,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":344,"start":247,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":810,"start":760,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":563,"start":503,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":715,"start":682,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":9,"overlap_bases":66}],"query_bed":[715,781],"query_length":66,"union_overlap_bases":66},"family":"touching_boundary","fingerprint":"fbb4569c886c418c83b4ef232395c83e09ecc57a7926e1c4302a48afb88e35a7","group_id":"fbb4569c886c418c83b4ef232395c83e09ecc57a7926e1c4302a48afb88e35a7","id":"INTERVALS-0000880","index":880,"input":{"contigs":{"synthetic_A":1474,"synthetic_B":840},"features":[{"basis":"one_closed","contig":"synthetic_A","end":715,"start":714,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":793,"start":782,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":754,"start":717,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":388,"start":358,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1048,"start":1042,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":381,"start":339,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":922,"start":900,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":121,"start":53,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1395,"start":1350,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":819,"start":716,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":142,"start":97,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":289,"start":223,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":781,"start":716,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":52},{"feature_index":1,"overlap_bases":50}],"query_bed":[522,574],"query_length":52,"union_overlap_bases":52},"family":"nested","fingerprint":"079f2c444c7ac4df98177bf11588bb07cd671d1e5a0add47aaf6c7fd29d26739","group_id":"079f2c444c7ac4df98177bf11588bb07cd671d1e5a0add47aaf6c7fd29d26739","id":"INTERVALS-0000891","index":891,"input":{"contigs":{"synthetic_A":859,"synthetic_B":975},"features":[{"basis":"one_closed","contig":"synthetic_B","end":579,"start":518,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":573,"start":523,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":285,"start":204,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":200,"start":180,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":150,"start":30,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":475,"start":422,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":245,"start":231,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":185,"start":106,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":192,"start":73,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":631,"start":587,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":574,"start":523,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[454,514],"query_length":60,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"f25f3616bec46c32e982ce328656ab52a8b5a66a5ea15863772bf5886a8300e6","group_id":"f25f3616bec46c32e982ce328656ab52a8b5a66a5ea15863772bf5886a8300e6","id":"INTERVALS-0000895","index":895,"input":{"contigs":{"synthetic_A":861,"synthetic_B":1022},"features":[{"basis":"one_closed","contig":"synthetic_A","end":454,"start":437,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":530,"start":514,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":186,"start":118,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":205,"start":173,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":129,"start":31,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":408,"start":341,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":685,"start":664,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":514,"start":455,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":68}],"query_bed":[761,829],"query_length":68,"union_overlap_bases":68},"family":"stranded","fingerprint":"10acd26e45075df8e761027f4656c214e70bb64601367b29b87a4af17f829407","group_id":"10acd26e45075df8e761027f4656c214e70bb64601367b29b87a4af17f829407","id":"INTERVALS-0000903","index":903,"input":{"contigs":{"synthetic_A":1097,"synthetic_B":968},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":829,"start":761,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":829,"start":762,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":92,"start":79,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":504,"start":476,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":583,"start":527,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":829,"start":762,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":69},{"feature_index":2,"overlap_bases":2}],"query_bed":[135,205],"query_length":70,"union_overlap_bases":70},"family":"overlapping_blocks","fingerprint":"6441150cd819bde1a88eb5ee335ffd641bd10d2061f2e44d91fe0d12ea088176","group_id":"6441150cd819bde1a88eb5ee335ffd641bd10d2061f2e44d91fe0d12ea088176","id":"INTERVALS-0000912","index":912,"input":{"contigs":{"synthetic_A":1050,"synthetic_B":701},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":138,"start":132,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":205,"start":136,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":208,"start":204,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":249,"start":195,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":513,"start":453,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":232,"start":127,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":205,"start":136,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":44},{"feature_index":1,"overlap_bases":42}],"query_bed":[139,183],"query_length":44,"union_overlap_bases":44},"family":"nested","fingerprint":"61ccd7b61fc020ab06d42489e05158062e6f6918a8b2578351816088d6020feb","group_id":"61ccd7b61fc020ab06d42489e05158062e6f6918a8b2578351816088d6020feb","id":"INTERVALS-0000916","index":916,"input":{"contigs":{"synthetic_A":1543,"synthetic_B":1238},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":188,"start":134,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":182,"start":140,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1025,"start":930,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1154,"start":1122,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":262,"start":222,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":605,"start":586,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":343,"start":272,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":183,"start":140,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":69},{"feature_index":2,"overlap_bases":2}],"query_bed":[296,366],"query_length":70,"union_overlap_bases":70},"family":"overlapping_blocks","fingerprint":"e952dfb47e30a69cf4cec52f1bf3d517d321bf6bcc29a2ad3c172d7c96747d5a","group_id":"e952dfb47e30a69cf4cec52f1bf3d517d321bf6bcc29a2ad3c172d7c96747d5a","id":"INTERVALS-0000922","index":922,"input":{"contigs":{"synthetic_A":1118,"synthetic_B":1759},"features":[{"basis":"one_closed","contig":"synthetic_A","end":299,"start":294,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":366,"start":298,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":369,"start":365,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1133,"start":1056,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":759,"start":692,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1074,"start":998,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":366,"start":297,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[82,105],"query_length":23,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"475ae6e8cb24b2f6168c24e44f5eb3e615b68b1541acdd94351e5954c8fdac80","group_id":"475ae6e8cb24b2f6168c24e44f5eb3e615b68b1541acdd94351e5954c8fdac80","id":"INTERVALS-0000925","index":925,"input":{"contigs":{"synthetic_A":1762,"synthetic_B":828},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":82,"start":72,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":108,"start":105,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":234,"start":139,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1372,"start":1305,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":356,"start":317,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1705,"start":1599,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":388,"start":319,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":58,"start":7,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":105,"start":82,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":70},{"feature_index":2,"overlap_bases":2}],"query_bed":[569,640],"query_length":71,"union_overlap_bases":71},"family":"overlapping_blocks","fingerprint":"ca7271b82a701778d5063423a741be41e4f4f1aef76fdce8f036a2a5c07c23cd","group_id":"ca7271b82a701778d5063423a741be41e4f4f1aef76fdce8f036a2a5c07c23cd","id":"INTERVALS-0000932","index":932,"input":{"contigs":{"synthetic_A":1035,"synthetic_B":605},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":572,"start":566,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":640,"start":571,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":643,"start":638,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":282,"start":246,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":437,"start":396,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":547,"start":480,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":281,"start":198,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":264,"start":175,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":177,"start":63,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":424,"start":385,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":241,"start":191,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":640,"start":570,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":37}],"query_bed":[93,130],"query_length":37,"union_overlap_bases":37},"family":"stranded","fingerprint":"c4a1457a1e116236837378290e28c89049a070aa310be74d5f49686565b60680","group_id":"c4a1457a1e116236837378290e28c89049a070aa310be74d5f49686565b60680","id":"INTERVALS-0000933","index":933,"input":{"contigs":{"synthetic_A":1635,"synthetic_B":1334},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":130,"start":93,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":130,"start":93,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1601,"start":1490,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":719,"start":637,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1052,"start":999,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":434,"start":332,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":452,"start":443,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":272,"start":200,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":130,"start":94,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":53},{"feature_index":9,"overlap_bases":22}],"query_bed":[560,613],"query_length":53,"union_overlap_bases":53},"family":"coordinate_conversion","fingerprint":"a2fd18aede008bc4f8a5811a154e27883e478608dd8673a273412222952069db","group_id":"a2fd18aede008bc4f8a5811a154e27883e478608dd8673a273412222952069db","id":"INTERVALS-0000934","index":934,"input":{"contigs":{"synthetic_A":935,"synthetic_B":838},"features":[{"basis":"one_closed","contig":"synthetic_B","end":613,"start":561,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":360,"start":264,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":277,"start":237,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":311,"start":290,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":741,"start":720,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":746,"start":697,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":611,"start":591,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":733,"start":729,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":335,"start":312,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":582,"start":465,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":613,"start":561,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73}],"query_bed":[81,154],"query_length":73,"union_overlap_bases":73},"family":"coordinate_conversion","fingerprint":"53f4c11c7d651dd6699c475f66dd0bf13de26c00049a29330bdbc96901159bbe","group_id":"53f4c11c7d651dd6699c475f66dd0bf13de26c00049a29330bdbc96901159bbe","id":"INTERVALS-0000974","index":974,"input":{"contigs":{"synthetic_A":844,"synthetic_B":790},"features":[{"basis":"one_closed","contig":"synthetic_A","end":154,"start":82,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":619,"start":543,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":410,"start":365,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":746,"start":638,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":482,"start":437,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":290,"start":259,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":154,"start":82,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":60},{"feature_index":1,"overlap_bases":1}],"query_bed":[547,607],"query_length":60,"union_overlap_bases":60},"family":"coordinate_conversion","fingerprint":"32883d42e5bd468952990e8b2363dffacc5ed75d884a12432538eda88b2fc80b","group_id":"32883d42e5bd468952990e8b2363dffacc5ed75d884a12432538eda88b2fc80b","id":"INTERVALS-0000989","index":989,"input":{"contigs":{"synthetic_A":1122,"synthetic_B":783},"features":[{"basis":"one_closed","contig":"synthetic_B","end":607,"start":548,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":548,"start":542,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":164,"start":63,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":523,"start":414,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":479,"start":395,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":824,"start":724,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":630,"start":624,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":607,"start":548,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":43},{"feature_index":1,"overlap_bases":41},{"feature_index":5,"overlap_bases":43},{"feature_index":7,"overlap_bases":6}],"query_bed":[128,171],"query_length":43,"union_overlap_bases":43},"family":"nested","fingerprint":"293031fa9bb7f2b8dc3c24c27d8ede6b0bdffe934bab3c219e3d34bf5c6af26f","group_id":"293031fa9bb7f2b8dc3c24c27d8ede6b0bdffe934bab3c219e3d34bf5c6af26f","id":"INTERVALS-0000991","index":991,"input":{"contigs":{"synthetic_A":829,"synthetic_B":1480},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":176,"start":123,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":170,"start":129,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":794,"start":763,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":569,"start":538,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":622,"start":521,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":185,"start":113,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":499,"start":381,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":165,"start":159,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":349,"start":334,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":171,"start":128,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":34},{"feature_index":2,"overlap_bases":2}],"query_bed":[122,157],"query_length":35,"union_overlap_bases":35},"family":"overlapping_blocks","fingerprint":"25656608789fcb80c48ddc3cf02ad2d05f98b4e86e3031f01d0196dd55a4d53d","group_id":"25656608789fcb80c48ddc3cf02ad2d05f98b4e86e3031f01d0196dd55a4d53d","id":"INTERVALS-0001002","index":1002,"input":{"contigs":{"synthetic_A":1738,"synthetic_B":1537},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":125,"start":119,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":157,"start":123,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":160,"start":155,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":503,"start":490,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1162,"start":1096,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1156,"start":1147,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":532,"start":475,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":157,"start":122,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":60}],"query_bed":[595,655],"query_length":60,"union_overlap_bases":60},"family":"stranded","fingerprint":"4bb0e8b442cef5ebf57a6b45c9c0e45279d74c320fb49259a1e8c95eb60fe0cf","group_id":"4bb0e8b442cef5ebf57a6b45c9c0e45279d74c320fb49259a1e8c95eb60fe0cf","id":"INTERVALS-0001003","index":1003,"input":{"contigs":{"synthetic_A":805,"synthetic_B":1102},"features":[{"basis":"one_closed","contig":"synthetic_A","end":655,"start":596,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":655,"start":595,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1032,"start":973,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":155,"start":140,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":264,"start":251,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":764,"start":650,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":110,"start":92,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":945,"start":927,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":655,"start":596,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":25}],"query_bed":[724,749],"query_length":25,"union_overlap_bases":25},"family":"stranded","fingerprint":"405c472ec3c1b45e9ef3e6e51e4cc9dcb4b1da889fd6b243e9ca9c4559e02ad2","group_id":"405c472ec3c1b45e9ef3e6e51e4cc9dcb4b1da889fd6b243e9ca9c4559e02ad2","id":"INTERVALS-0001048","index":1048,"input":{"contigs":{"synthetic_A":1373,"synthetic_B":1642},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":749,"start":724,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":749,"start":724,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1248,"start":1191,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":690,"start":661,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":551,"start":507,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":215,"start":127,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":156,"start":156,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":393,"start":333,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1285,"start":1219,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":749,"start":725,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[198,260],"query_length":62,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e4655054dddf2a22f63bef0ce83a80cbb910b06ae6f3c27d730e8d887dd98b51","group_id":"e4655054dddf2a22f63bef0ce83a80cbb910b06ae6f3c27d730e8d887dd98b51","id":"INTERVALS-0001070","index":1070,"input":{"contigs":{"synthetic_A":1224,"synthetic_B":1461},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":198,"start":179,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":293,"start":261,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":693,"start":648,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":174,"start":140,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":367,"start":332,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":395,"start":373,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":363,"start":361,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":260,"start":198,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":54}],"query_bed":[801,855],"query_length":54,"union_overlap_bases":54},"family":"coordinate_conversion","fingerprint":"80dffb2449a0a40b91294414f4f50596cb895b56ae8f2cca5de9f9b6e1123641","group_id":"80dffb2449a0a40b91294414f4f50596cb895b56ae8f2cca5de9f9b6e1123641","id":"INTERVALS-0001074","index":1074,"input":{"contigs":{"synthetic_A":1634,"synthetic_B":1499},"features":[{"basis":"one_closed","contig":"synthetic_A","end":855,"start":802,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1010,"start":910,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":543,"start":449,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":418,"start":357,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":974,"start":907,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1452,"start":1346,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":578,"start":536,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":92,"start":52,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":855,"start":802,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18},{"feature_index":1,"overlap_bases":16}],"query_bed":[777,795],"query_length":18,"union_overlap_bases":18},"family":"nested","fingerprint":"4aba7114d902f3fc648a6c299563918f9ab65d27b1566c8050a2a632a1788365","group_id":"4aba7114d902f3fc648a6c299563918f9ab65d27b1566c8050a2a632a1788365","id":"INTERVALS-0001081","index":1081,"input":{"contigs":{"synthetic_A":1485,"synthetic_B":1443},"features":[{"basis":"one_closed","contig":"synthetic_B","end":800,"start":773,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":794,"start":779,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":194,"start":120,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":721,"start":659,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":609,"start":546,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":808,"start":704,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":453,"start":391,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1250,"start":1249,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1253,"start":1176,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1130,"start":1123,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":366,"start":323,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1297,"start":1265,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":795,"start":777,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":4},{"feature_index":2,"overlap_bases":2},{"feature_index":5,"overlap_bases":5}],"query_bed":[409,414],"query_length":5,"union_overlap_bases":5},"family":"overlapping_blocks","fingerprint":"0724d9dafb23db00da925e78934fc887407b8fcaf76bcd179c7e1a136f993dcb","group_id":"0724d9dafb23db00da925e78934fc887407b8fcaf76bcd179c7e1a136f993dcb","id":"INTERVALS-0001107","index":1107,"input":{"contigs":{"synthetic_A":1708,"synthetic_B":1701},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":412,"start":406,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":414,"start":411,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":417,"start":412,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1509,"start":1416,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":269,"start":267,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":424,"start":319,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":487,"start":460,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":321,"start":299,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1288,"start":1182,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":627,"start":589,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":133,"start":78,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":414,"start":409,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":73},{"feature_index":2,"overlap_bases":2},{"feature_index":6,"overlap_bases":64}],"query_bed":[1223,1297],"query_length":74,"union_overlap_bases":74},"family":"overlapping_blocks","fingerprint":"e8ee98925274dfc0c920232048b8c10efe05279cdd11556e9be9932609dec51d","group_id":"e8ee98925274dfc0c920232048b8c10efe05279cdd11556e9be9932609dec51d","id":"INTERVALS-0001137","index":1137,"input":{"contigs":{"synthetic_A":1481,"synthetic_B":1570},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1226,"start":1220,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1297,"start":1224,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1300,"start":1295,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":77,"start":66,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":480,"start":413,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":427,"start":325,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1287,"start":1204,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":833,"start":798,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":255,"start":140,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":879,"start":776,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1297,"start":1223,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":59},{"feature_index":1,"overlap_bases":57}],"query_bed":[1295,1354],"query_length":59,"union_overlap_bases":59},"family":"nested","fingerprint":"030342c43109ec75779bbcbd1136b7bd49f8bab7248b999e38ae3154f348f193","group_id":"030342c43109ec75779bbcbd1136b7bd49f8bab7248b999e38ae3154f348f193","id":"INTERVALS-0001156","index":1156,"input":{"contigs":{"synthetic_A":1594,"synthetic_B":1684},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1359,"start":1290,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1353,"start":1297,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1090,"start":1025,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":104,"start":28,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":894,"start":864,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":323,"start":282,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":919,"start":822,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1354,"start":1296,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":79},{"feature_index":2,"overlap_bases":2},{"feature_index":10,"overlap_bases":15}],"query_bed":[511,591],"query_length":80,"union_overlap_bases":80},"family":"overlapping_blocks","fingerprint":"fe9be7e451bf018035192a20c61400924082e5246c13f8d82704c5bb99cd4401","group_id":"fe9be7e451bf018035192a20c61400924082e5246c13f8d82704c5bb99cd4401","id":"INTERVALS-0001187","index":1187,"input":{"contigs":{"synthetic_A":1649,"synthetic_B":821},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":514,"start":508,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":591,"start":512,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":594,"start":590,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":408,"start":326,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":294,"start":266,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":760,"start":681,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":770,"start":667,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":619,"start":594,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":284,"start":200,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":601,"start":534,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":688,"start":576,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":591,"start":512,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":28},{"feature_index":2,"overlap_bases":2}],"query_bed":[696,725],"query_length":29,"union_overlap_bases":29},"family":"overlapping_blocks","fingerprint":"51345e7e0e242a0b39199d0801aefd0a2e5f9341cac2c1c7bfefcee29436f231","group_id":"51345e7e0e242a0b39199d0801aefd0a2e5f9341cac2c1c7bfefcee29436f231","id":"INTERVALS-0001202","index":1202,"input":{"contigs":{"synthetic_A":996,"synthetic_B":628},"features":[{"basis":"one_closed","contig":"synthetic_A","end":699,"start":694,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":725,"start":697,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":728,"start":724,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":136,"start":109,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":313,"start":291,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":293,"start":199,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":313,"start":282,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":725,"start":697,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":54},{"feature_index":3,"overlap_bases":34}],"query_bed":[70,124],"query_length":54,"union_overlap_bases":54},"family":"coordinate_conversion","fingerprint":"256b717ecf84765f1ebb35cfb4893c7bcd12993596088ef8c7416631eb117724","group_id":"256b717ecf84765f1ebb35cfb4893c7bcd12993596088ef8c7416631eb117724","id":"INTERVALS-0001214","index":1214,"input":{"contigs":{"synthetic_A":763,"synthetic_B":722},"features":[{"basis":"one_closed","contig":"synthetic_A","end":124,"start":71,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":56,"start":50,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":207,"start":109,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":136,"start":91,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":467,"start":365,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":527,"start":460,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":301,"start":230,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":40,"start":37,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":555,"start":504,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":472,"start":448,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":390,"start":345,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":456,"start":456,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":124,"start":71,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":66},{"feature_index":1,"overlap_bases":64}],"query_bed":[138,204],"query_length":66,"union_overlap_bases":66},"family":"nested","fingerprint":"89bc9e463ff5b44c6b8ef120c332b148dc5b9d69f34b67b66401b6ebb00edb03","group_id":"89bc9e463ff5b44c6b8ef120c332b148dc5b9d69f34b67b66401b6ebb00edb03","id":"INTERVALS-0001216","index":1216,"input":{"contigs":{"synthetic_A":1658,"synthetic_B":1289},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":209,"start":133,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":203,"start":140,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":396,"start":303,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":674,"start":567,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":545,"start":507,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":844,"start":794,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":128,"start":54,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":506,"start":422,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":760,"start":704,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":762,"start":648,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":261,"start":229,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":204,"start":138,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":78}],"query_bed":[38,116],"query_length":78,"union_overlap_bases":78},"family":"stranded","fingerprint":"e67b3c6eab2de99733a6e36a1374ed458928996c1dfabcfc249113201bfb90b0","group_id":"e67b3c6eab2de99733a6e36a1374ed458928996c1dfabcfc249113201bfb90b0","id":"INTERVALS-0001218","index":1218,"input":{"contigs":{"synthetic_A":1741,"synthetic_B":981},"features":[{"basis":"one_closed","contig":"synthetic_B","end":116,"start":39,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":116,"start":39,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":424,"start":354,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":987,"start":938,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":481,"start":464,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":307,"start":192,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":790,"start":709,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":258,"start":179,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":116,"start":38,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":65}],"query_bed":[337,402],"query_length":65,"union_overlap_bases":65},"family":"stranded","fingerprint":"abd1aca6c00ff6d95706dc87014e56ef5352ed9d9421cfd9ae88c00acbbebcac","group_id":"abd1aca6c00ff6d95706dc87014e56ef5352ed9d9421cfd9ae88c00acbbebcac","id":"INTERVALS-0001223","index":1223,"input":{"contigs":{"synthetic_A":1447,"synthetic_B":1758},"features":[{"basis":"one_closed","contig":"synthetic_B","end":402,"start":338,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":402,"start":337,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":519,"start":439,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1061,"start":1004,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1103,"start":1073,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":402,"start":337,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":47}],"query_bed":[211,258],"query_length":47,"union_overlap_bases":47},"family":"coordinate_conversion","fingerprint":"6edb8e20fb077933700ab5874c7887a5b38c246060b62432d33aae8d837380d8","group_id":"6edb8e20fb077933700ab5874c7887a5b38c246060b62432d33aae8d837380d8","id":"INTERVALS-0001229","index":1229,"input":{"contigs":{"synthetic_A":854,"synthetic_B":1112},"features":[{"basis":"one_closed","contig":"synthetic_A","end":258,"start":212,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":498,"start":445,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":423,"start":380,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":353,"start":284,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":541,"start":457,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":492,"start":417,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":364,"start":312,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":258,"start":212,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[260,271],"query_length":11,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"b2e2bbe8ea2806ec7626c4964fa2593b914da6ee188b18db16912a1a10e67f8c","group_id":"b2e2bbe8ea2806ec7626c4964fa2593b914da6ee188b18db16912a1a10e67f8c","id":"INTERVALS-0001265","index":1265,"input":{"contigs":{"synthetic_A":1734,"synthetic_B":664},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":260,"start":250,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":286,"start":272,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":142,"start":63,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":51,"start":45,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":664,"start":651,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":186,"start":91,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":271,"start":261,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":74}],"query_bed":[632,706],"query_length":74,"union_overlap_bases":74},"family":"stranded","fingerprint":"f88353386691349c2a24709db0c239be8ffbf36ea5e7470ff32b4773ca613179","group_id":"f88353386691349c2a24709db0c239be8ffbf36ea5e7470ff32b4773ca613179","id":"INTERVALS-0001268","index":1268,"input":{"contigs":{"synthetic_A":617,"synthetic_B":1070},"features":[{"basis":"one_closed","contig":"synthetic_B","end":706,"start":633,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":706,"start":632,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":557,"start":487,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":159,"start":92,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":145,"start":90,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":326,"start":286,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":475,"start":400,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":114,"start":17,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":292,"start":219,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":218,"start":137,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":180,"start":109,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":98,"start":15,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":706,"start":633,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":9,"overlap_bases":25}],"query_bed":[297,350],"query_length":53,"union_overlap_bases":25},"family":"touching_boundary","fingerprint":"327bd92685dfb038152cd7bbc297e3bfcccefac4536f73ff793695b6c2f5b222","group_id":"327bd92685dfb038152cd7bbc297e3bfcccefac4536f73ff793695b6c2f5b222","id":"INTERVALS-0001270","index":1270,"input":{"contigs":{"synthetic_A":1789,"synthetic_B":882},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":297,"start":290,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":378,"start":350,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1277,"start":1264,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1261,"start":1255,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":564,"start":460,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":515,"start":470,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":59,"start":41,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":282,"start":201,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1012,"start":910,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":322,"start":269,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":117,"start":72,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":350,"start":297,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":61}],"query_bed":[639,700],"query_length":61,"union_overlap_bases":61},"family":"coordinate_conversion","fingerprint":"84132f82fc9f7523a79ffdc5d09720239e73708c9469d4286c9947a0d1bd4a79","group_id":"84132f82fc9f7523a79ffdc5d09720239e73708c9469d4286c9947a0d1bd4a79","id":"INTERVALS-0001279","index":1279,"input":{"contigs":{"synthetic_A":768,"synthetic_B":861},"features":[{"basis":"one_closed","contig":"synthetic_B","end":700,"start":640,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":591,"start":587,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":611,"start":514,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":573,"start":468,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":160,"start":142,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":292,"start":261,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":601,"start":485,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":298,"start":215,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":740,"start":718,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":321,"start":294,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":700,"start":640,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":47}],"query_bed":[178,225],"query_length":47,"union_overlap_bases":47},"family":"coordinate_conversion","fingerprint":"80f054ce707d77c0d2aaff0f75819064419a5a0dc1803815e6ae2d78217f145c","group_id":"80f054ce707d77c0d2aaff0f75819064419a5a0dc1803815e6ae2d78217f145c","id":"INTERVALS-0001294","index":1294,"input":{"contigs":{"synthetic_A":612,"synthetic_B":1074},"features":[{"basis":"one_closed","contig":"synthetic_A","end":225,"start":179,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":561,"start":476,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":106,"start":96,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":533,"start":464,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":711,"start":602,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":496,"start":382,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":277,"start":186,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":926,"start":926,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":231,"start":167,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":225,"start":179,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":19},{"feature_index":1,"overlap_bases":17}],"query_bed":[940,959],"query_length":19,"union_overlap_bases":19},"family":"nested","fingerprint":"215b41229e2060cc347a3b9c1db7e18b23b1564358969a54c4f8b5fb16574c4a","group_id":"215b41229e2060cc347a3b9c1db7e18b23b1564358969a54c4f8b5fb16574c4a","id":"INTERVALS-0001306","index":1306,"input":{"contigs":{"synthetic_A":726,"synthetic_B":1167},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":964,"start":935,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":958,"start":942,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":704,"start":625,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":611,"start":530,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":540,"start":498,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":904,"start":852,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":511,"start":420,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":483,"start":459,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":509,"start":440,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":807,"start":713,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":436,"start":403,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":625,"start":586,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":959,"start":940,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[937,954],"query_length":17,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"43d1f67407e81d5b86a894803eed91663bb2490e687e38c86b8e90bc4b52ca7a","group_id":"43d1f67407e81d5b86a894803eed91663bb2490e687e38c86b8e90bc4b52ca7a","id":"INTERVALS-0001310","index":1310,"input":{"contigs":{"synthetic_A":1703,"synthetic_B":1611},"features":[{"basis":"one_closed","contig":"synthetic_A","end":937,"start":928,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":974,"start":955,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1445,"start":1344,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":492,"start":489,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1110,"start":1012,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":492,"start":467,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":574,"start":469,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1127,"start":1093,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":968,"start":941,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":933,"start":859,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":954,"start":938,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":44}],"query_bed":[904,948],"query_length":44,"union_overlap_bases":44},"family":"coordinate_conversion","fingerprint":"8c8fa9e29e5f871c0c74cba6d6cb4ec936607b6c26c7be85b66806eb169efb55","group_id":"8c8fa9e29e5f871c0c74cba6d6cb4ec936607b6c26c7be85b66806eb169efb55","id":"INTERVALS-0001334","index":1334,"input":{"contigs":{"synthetic_A":1366,"synthetic_B":1628},"features":[{"basis":"one_closed","contig":"synthetic_B","end":948,"start":905,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":202,"start":126,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1005,"start":908,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1244,"start":1171,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":704,"start":690,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":255,"start":157,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1185,"start":1134,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":967,"start":874,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1105,"start":1091,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":257,"start":185,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":948,"start":905,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":52},{"feature_index":1,"overlap_bases":50}],"query_bed":[505,557],"query_length":52,"union_overlap_bases":52},"family":"nested","fingerprint":"8bbf380cc6eae6b5f8fbdea3b1feed4dff9b80ffb5bba4e440dbbdc449357e07","group_id":"8bbf380cc6eae6b5f8fbdea3b1feed4dff9b80ffb5bba4e440dbbdc449357e07","id":"INTERVALS-0001341","index":1341,"input":{"contigs":{"synthetic_A":1276,"synthetic_B":858},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":562,"start":500,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":556,"start":507,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":43,"start":18,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":211,"start":103,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":266,"start":176,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":210,"start":119,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":416,"start":306,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":478,"start":407,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":196,"start":153,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":557,"start":505,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":80},{"feature_index":1,"overlap_bases":78}],"query_bed":[975,1055],"query_length":80,"union_overlap_bases":80},"family":"nested","fingerprint":"41c30378475bc438f516b8d9f1282b55df4b76499a02b60269fe5dd623873905","group_id":"41c30378475bc438f516b8d9f1282b55df4b76499a02b60269fe5dd623873905","id":"INTERVALS-0001351","index":1351,"input":{"contigs":{"synthetic_A":1270,"synthetic_B":1670},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1060,"start":971,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1054,"start":976,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":851,"start":733,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1129,"start":1094,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1568,"start":1453,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1499,"start":1463,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":681,"start":677,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1611,"start":1506,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":603,"start":580,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1055,"start":976,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":33},{"feature_index":1,"overlap_bases":31}],"query_bed":[136,169],"query_length":33,"union_overlap_bases":33},"family":"nested","fingerprint":"41c014ba5cae86b3ef5e0203410d641e8dd03064b69f5e930c5914453b286c83","group_id":"41c014ba5cae86b3ef5e0203410d641e8dd03064b69f5e930c5914453b286c83","id":"INTERVALS-0001366","index":1366,"input":{"contigs":{"synthetic_A":1021,"synthetic_B":1074},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":174,"start":131,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":168,"start":138,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":897,"start":891,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1018,"start":911,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":776,"start":760,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":359,"start":301,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":836,"start":791,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":165,"start":151,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":169,"start":137,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56},{"feature_index":1,"overlap_bases":3},{"feature_index":2,"overlap_bases":56}],"query_bed":[523,579],"query_length":56,"union_overlap_bases":56},"family":"coordinate_conversion","fingerprint":"766f87a4d57477ab79dd18e5cd6901d3528407f2d9b7e9656481ee410e230dae","group_id":"766f87a4d57477ab79dd18e5cd6901d3528407f2d9b7e9656481ee410e230dae","id":"INTERVALS-0001384","index":1384,"input":{"contigs":{"synthetic_A":739,"synthetic_B":906},"features":[{"basis":"one_closed","contig":"synthetic_B","end":579,"start":524,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":637,"start":577,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":631,"start":518,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":80,"start":39,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":395,"start":325,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":547,"start":467,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":82,"start":47,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":190,"start":97,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":664,"start":591,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":98,"start":59,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":128,"start":32,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":579,"start":524,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":68},{"feature_index":2,"overlap_bases":2}],"query_bed":[576,645],"query_length":69,"union_overlap_bases":69},"family":"overlapping_blocks","fingerprint":"c2ad829c5a3d7a2957132a1dc3cdf6002872d922bbc3df42afc1af7f55a15bb9","group_id":"c2ad829c5a3d7a2957132a1dc3cdf6002872d922bbc3df42afc1af7f55a15bb9","id":"INTERVALS-0001407","index":1407,"input":{"contigs":{"synthetic_A":724,"synthetic_B":1020},"features":[{"basis":"one_closed","contig":"synthetic_B","end":579,"start":574,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":645,"start":578,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":648,"start":643,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":202,"start":159,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":425,"start":392,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":463,"start":455,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":61,"start":24,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":236,"start":132,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":246,"start":199,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":95,"start":16,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":50,"start":1,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":397,"start":341,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":645,"start":576,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":63}],"query_bed":[822,885],"query_length":63,"union_overlap_bases":63},"family":"stranded","fingerprint":"10cc7d623a56f86ed4fcaae932fe82957e3a29c73068ecbd436503f8c7467aad","group_id":"10cc7d623a56f86ed4fcaae932fe82957e3a29c73068ecbd436503f8c7467aad","id":"INTERVALS-0001443","index":1443,"input":{"contigs":{"synthetic_A":1762,"synthetic_B":1102},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":885,"start":822,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":885,"start":822,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":702,"start":610,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1208,"start":1112,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":152,"start":136,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1067,"start":1062,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":885,"start":823,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":20},{"feature_index":1,"overlap_bases":18},{"feature_index":2,"overlap_bases":16}],"query_bed":[950,970],"query_length":20,"union_overlap_bases":20},"family":"nested","fingerprint":"f9d148da3da8cddd0854a6a596fcd7d7909d750ad1a7ab50607eb9679fab78a5","group_id":"f9d148da3da8cddd0854a6a596fcd7d7909d750ad1a7ab50607eb9679fab78a5","id":"INTERVALS-0001451","index":1451,"input":{"contigs":{"synthetic_A":1515,"synthetic_B":727},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":975,"start":945,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":969,"start":952,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":981,"start":954,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":741,"start":636,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":187,"start":147,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":287,"start":212,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":547,"start":471,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":281,"start":165,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":338,"start":316,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":437,"start":392,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":970,"start":950,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":4,"overlap_bases":6}],"query_bed":[199,205],"query_length":6,"union_overlap_bases":6},"family":"touching_boundary","fingerprint":"c191f00062c881e810b147c1e5f1809dbe3022de4fa991359e40ee8be1d6850a","group_id":"c191f00062c881e810b147c1e5f1809dbe3022de4fa991359e40ee8be1d6850a","id":"INTERVALS-0001460","index":1460,"input":{"contigs":{"synthetic_A":1620,"synthetic_B":1134},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":199,"start":185,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":213,"start":205,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":467,"start":467,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":648,"start":583,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":235,"start":126,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":851,"start":737,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":102,"start":73,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":898,"start":811,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":205,"start":199,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":35},{"feature_index":1,"overlap_bases":33}],"query_bed":[120,155],"query_length":35,"union_overlap_bases":35},"family":"nested","fingerprint":"a458fabaf662f38b9eee41eca1fc50d476e3c6e7587aa50f19145f9fb3acf17f","group_id":"a458fabaf662f38b9eee41eca1fc50d476e3c6e7587aa50f19145f9fb3acf17f","id":"INTERVALS-0001461","index":1461,"input":{"contigs":{"synthetic_A":1413,"synthetic_B":1705},"features":[{"basis":"one_closed","contig":"synthetic_A","end":160,"start":116,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":154,"start":121,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1367,"start":1331,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":789,"start":767,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1438,"start":1322,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":620,"start":584,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":510,"start":442,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":639,"start":622,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1189,"start":1077,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":155,"start":121,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":54},{"feature_index":2,"overlap_bases":2},{"feature_index":5,"overlap_bases":12}],"query_bed":[385,440],"query_length":55,"union_overlap_bases":55},"family":"overlapping_blocks","fingerprint":"f685b59e8c7bf887a7f2aa5cee89b2ca870ca3510c76ca19bd4e2b785f5532a2","group_id":"f685b59e8c7bf887a7f2aa5cee89b2ca870ca3510c76ca19bd4e2b785f5532a2","id":"INTERVALS-0001462","index":1462,"input":{"contigs":{"synthetic_A":857,"synthetic_B":1407},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":388,"start":382,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":440,"start":387,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":443,"start":439,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":517,"start":477,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":702,"start":646,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":504,"start":429,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":440,"start":385,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":16},{"feature_index":1,"overlap_bases":14}],"query_bed":[616,632],"query_length":16,"union_overlap_bases":16},"family":"nested","fingerprint":"80e453f4e7eaac26cdd5cdb7caf2b83e9a4e62fc2100549891ea1f15b068f206","group_id":"80e453f4e7eaac26cdd5cdb7caf2b83e9a4e62fc2100549891ea1f15b068f206","id":"INTERVALS-0001496","index":1496,"input":{"contigs":{"synthetic_A":1140,"synthetic_B":900},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":637,"start":611,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":631,"start":618,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":921,"start":827,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":325,"start":263,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":435,"start":413,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":179,"start":113,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":632,"start":616,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":77}],"query_bed":[221,298],"query_length":77,"union_overlap_bases":77},"family":"stranded","fingerprint":"a84755047b36c95922b617b98bf699434f15bf4ec659ef6dd5446b06e8f767c3","group_id":"a84755047b36c95922b617b98bf699434f15bf4ec659ef6dd5446b06e8f767c3","id":"INTERVALS-0001498","index":1498,"input":{"contigs":{"synthetic_A":625,"synthetic_B":1184},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":298,"start":221,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":298,"start":222,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":995,"start":974,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":200,"start":142,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":219,"start":136,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":390,"start":341,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":543,"start":465,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":917,"start":839,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":298,"start":221,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":47},{"feature_index":2,"overlap_bases":2}],"query_bed":[551,599],"query_length":48,"union_overlap_bases":48},"family":"overlapping_blocks","fingerprint":"73a8e9ac2ca680550c9be80318ef7da4df54ae4b61686d448642944448cf1b2b","group_id":"73a8e9ac2ca680550c9be80318ef7da4df54ae4b61686d448642944448cf1b2b","id":"INTERVALS-0001537","index":1537,"input":{"contigs":{"synthetic_A":917,"synthetic_B":1200},"features":[{"basis":"one_closed","contig":"synthetic_B","end":554,"start":549,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":599,"start":553,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":602,"start":597,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":510,"start":482,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":658,"start":648,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":608,"start":594,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":421,"start":378,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":336,"start":292,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":329,"start":224,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":210,"start":137,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":756,"start":714,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":522,"start":458,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":599,"start":551,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":9,"overlap_bases":4}],"query_bed":[913,952],"query_length":39,"union_overlap_bases":4},"family":"touching_boundary","fingerprint":"5c8c11feed0dbf2991d6cae7e45795172bbb5b2815af9c44dac7f9d0ae86353a","group_id":"5c8c11feed0dbf2991d6cae7e45795172bbb5b2815af9c44dac7f9d0ae86353a","id":"INTERVALS-0001575","index":1575,"input":{"contigs":{"synthetic_A":1127,"synthetic_B":1232},"features":[{"basis":"one_closed","contig":"synthetic_A","end":913,"start":897,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":967,"start":953,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":705,"start":682,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1148,"start":1065,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":615,"start":497,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":621,"start":522,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":721,"start":681,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":706,"start":624,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":596,"start":495,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":917,"start":868,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":240,"start":228,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1166,"start":1074,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":952,"start":914,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":37}],"query_bed":[772,809],"query_length":37,"union_overlap_bases":37},"family":"coordinate_conversion","fingerprint":"caaa815c4132cd4b55eeb7242028fa3d73f792af55d3345217f4a313eb8f1bd3","group_id":"caaa815c4132cd4b55eeb7242028fa3d73f792af55d3345217f4a313eb8f1bd3","id":"INTERVALS-0001584","index":1584,"input":{"contigs":{"synthetic_A":1055,"synthetic_B":1588},"features":[{"basis":"one_closed","contig":"synthetic_B","end":809,"start":773,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":791,"start":674,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1044,"start":951,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":127,"start":107,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":397,"start":289,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1367,"start":1351,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":220,"start":180,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":943,"start":858,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1188,"start":1155,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":809,"start":773,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":56},{"feature_index":2,"overlap_bases":2}],"query_bed":[478,535],"query_length":57,"union_overlap_bases":57},"family":"overlapping_blocks","fingerprint":"674d288a0b8d95db750ee91fd74f111aaddc3307e4ead390756c532790cd3985","group_id":"674d288a0b8d95db750ee91fd74f111aaddc3307e4ead390756c532790cd3985","id":"INTERVALS-0001587","index":1587,"input":{"contigs":{"synthetic_A":1652,"synthetic_B":802},"features":[{"basis":"one_closed","contig":"synthetic_B","end":481,"start":476,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":535,"start":479,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":538,"start":533,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":676,"start":664,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":991,"start":893,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":535,"start":478,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46}],"query_bed":[916,962],"query_length":46,"union_overlap_bases":46},"family":"coordinate_conversion","fingerprint":"68d72fd4b4e19f3978f816cf23f8b765cd2749ffb1f2719ca2bc14393b272c8d","group_id":"68d72fd4b4e19f3978f816cf23f8b765cd2749ffb1f2719ca2bc14393b272c8d","id":"INTERVALS-0001594","index":1594,"input":{"contigs":{"synthetic_A":1274,"synthetic_B":1761},"features":[{"basis":"one_closed","contig":"synthetic_A","end":962,"start":917,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":651,"start":562,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":937,"start":898,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":845,"start":835,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":180,"start":84,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1299,"start":1288,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":448,"start":423,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":911,"start":819,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":962,"start":917,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":29},{"feature_index":2,"overlap_bases":29}],"query_bed":[347,376],"query_length":29,"union_overlap_bases":29},"family":"stranded","fingerprint":"90498328bf3e639a24608c3da77ad5d0b0dc9aea66356745552b05524dd1dec3","group_id":"90498328bf3e639a24608c3da77ad5d0b0dc9aea66356745552b05524dd1dec3","id":"INTERVALS-0001608","index":1608,"input":{"contigs":{"synthetic_A":666,"synthetic_B":831},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":376,"start":347,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":376,"start":347,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":414,"start":310,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":481,"start":426,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":208,"start":129,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":671,"start":601,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":376,"start":348,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":65},{"feature_index":2,"overlap_bases":2}],"query_bed":[570,636],"query_length":66,"union_overlap_bases":66},"family":"overlapping_blocks","fingerprint":"40e3fe9efe0c22fde2d0c063479ff9939430e0a02f3b78ef431a1956c6d50a99","group_id":"40e3fe9efe0c22fde2d0c063479ff9939430e0a02f3b78ef431a1956c6d50a99","id":"INTERVALS-0001612","index":1612,"input":{"contigs":{"synthetic_A":852,"synthetic_B":1743},"features":[{"basis":"one_closed","contig":"synthetic_B","end":573,"start":568,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":636,"start":572,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":639,"start":635,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":727,"start":645,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":367,"start":261,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":336,"start":231,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":636,"start":570,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[382,397],"query_length":15,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"067cef7215e127c3c2a69a04094d1aee1950cfb2b1621f12671d10b0ff6cc60c","group_id":"067cef7215e127c3c2a69a04094d1aee1950cfb2b1621f12671d10b0ff6cc60c","id":"INTERVALS-0001615","index":1615,"input":{"contigs":{"synthetic_A":1081,"synthetic_B":870},"features":[{"basis":"one_closed","contig":"synthetic_A","end":382,"start":364,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":408,"start":397,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":864,"start":788,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":309,"start":287,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":292,"start":245,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":85,"start":2,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":403,"start":384,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":561,"start":560,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":397,"start":383,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":68},{"feature_index":2,"overlap_bases":2}],"query_bed":[1084,1153],"query_length":69,"union_overlap_bases":69},"family":"overlapping_blocks","fingerprint":"ec5d982016d856f8b656794ae79da4aa27fffcb31465227711a4724a12c2ed7c","group_id":"ec5d982016d856f8b656794ae79da4aa27fffcb31465227711a4724a12c2ed7c","id":"INTERVALS-0001622","index":1622,"input":{"contigs":{"synthetic_A":637,"synthetic_B":1445},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1087,"start":1081,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1153,"start":1085,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1156,"start":1151,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1323,"start":1207,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":448,"start":392,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":371,"start":338,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":840,"start":726,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":634,"start":626,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":336,"start":305,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":810,"start":713,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":196,"start":152,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":120,"start":48,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1153,"start":1085,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[468,485],"query_length":17,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e38c7fa438707497bfd5066276a9ba33147df6f4b5376cfadd9faa17987cc276","group_id":"e38c7fa438707497bfd5066276a9ba33147df6f4b5376cfadd9faa17987cc276","id":"INTERVALS-0001625","index":1625,"input":{"contigs":{"synthetic_A":1786,"synthetic_B":872},"features":[{"basis":"one_closed","contig":"synthetic_B","end":468,"start":465,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":518,"start":486,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":272,"start":170,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":984,"start":941,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":418,"start":392,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1515,"start":1461,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":346,"start":310,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":592,"start":562,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1089,"start":1015,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":353,"start":344,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1036,"start":1000,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":485,"start":468,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":12}],"query_bed":[775,787],"query_length":12,"union_overlap_bases":12},"family":"stranded","fingerprint":"5378f4743d90bc1f0699aabe700a7cd419126c3dd691e58575705b603171bd0a","group_id":"5378f4743d90bc1f0699aabe700a7cd419126c3dd691e58575705b603171bd0a","id":"INTERVALS-0001628","index":1628,"input":{"contigs":{"synthetic_A":1363,"synthetic_B":1386},"features":[{"basis":"one_closed","contig":"synthetic_B","end":787,"start":776,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":787,"start":776,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":219,"start":207,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":96,"start":93,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":625,"start":554,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1088,"start":970,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1087,"start":1020,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":700,"start":643,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":396,"start":280,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":978,"start":896,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":787,"start":775,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":8}],"query_bed":[216,224],"query_length":8,"union_overlap_bases":8},"family":"coordinate_conversion","fingerprint":"fa0ac81c98c8796e488e4640f327848878e8a0440e424a6d7804edce422cedcb","group_id":"fa0ac81c98c8796e488e4640f327848878e8a0440e424a6d7804edce422cedcb","id":"INTERVALS-0001634","index":1634,"input":{"contigs":{"synthetic_A":1641,"synthetic_B":801},"features":[{"basis":"one_closed","contig":"synthetic_B","end":224,"start":217,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":873,"start":795,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":436,"start":317,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1596,"start":1508,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":346,"start":290,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":140,"start":23,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":939,"start":933,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":162,"start":149,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1191,"start":1182,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":174,"start":159,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":275,"start":257,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":224,"start":217,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":16},{"feature_index":2,"overlap_bases":2},{"feature_index":6,"overlap_bases":5}],"query_bed":[1121,1138],"query_length":17,"union_overlap_bases":17},"family":"overlapping_blocks","fingerprint":"f9b2ddbee2b3c31ea84fafc708e4686d6ff09a93512f4966d9cbf3a9ffdb69a5","group_id":"f9b2ddbee2b3c31ea84fafc708e4686d6ff09a93512f4966d9cbf3a9ffdb69a5","id":"INTERVALS-0001652","index":1652,"input":{"contigs":{"synthetic_A":1572,"synthetic_B":1294},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1124,"start":1119,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1138,"start":1123,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1141,"start":1136,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1257,"start":1169,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1151,"start":1049,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":143,"start":59,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1126,"start":1079,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1164,"start":1049,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":578,"start":543,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":731,"start":695,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":164,"start":134,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1138,"start":1122,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":58},{"feature_index":8,"overlap_bases":24}],"query_bed":[40,98],"query_length":58,"union_overlap_bases":58},"family":"stranded","fingerprint":"359ae2dca01d7bdf22af67c96ca1c13547cd9a1dcb1a52b5bbd41ac0411c8119","group_id":"359ae2dca01d7bdf22af67c96ca1c13547cd9a1dcb1a52b5bbd41ac0411c8119","id":"INTERVALS-0001653","index":1653,"input":{"contigs":{"synthetic_A":671,"synthetic_B":1411},"features":[{"basis":"one_closed","contig":"synthetic_A","end":98,"start":41,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":98,"start":41,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":818,"start":722,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":257,"start":194,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":395,"start":320,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":327,"start":246,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":475,"start":438,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":368,"start":357,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":64,"start":12,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":547,"start":462,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":295,"start":200,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":519,"start":403,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":98,"start":41,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":48},{"feature_index":2,"overlap_bases":2}],"query_bed":[312,361],"query_length":49,"union_overlap_bases":49},"family":"overlapping_blocks","fingerprint":"e4c8933ab78a02e9b4657f584e0c3f9015ed18120d2b653b409a409c4b8ae0e7","group_id":"e4c8933ab78a02e9b4657f584e0c3f9015ed18120d2b653b409a409c4b8ae0e7","id":"INTERVALS-0001662","index":1662,"input":{"contigs":{"synthetic_A":1782,"synthetic_B":1559},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":315,"start":309,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":361,"start":313,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":364,"start":360,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1454,"start":1369,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":493,"start":376,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":294,"start":176,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":361,"start":312,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":37}],"query_bed":[616,653],"query_length":37,"union_overlap_bases":37},"family":"coordinate_conversion","fingerprint":"a65e7f10c75794897a589ee85232d9daba5c2f83ae60749032958a4b7c57b137","group_id":"a65e7f10c75794897a589ee85232d9daba5c2f83ae60749032958a4b7c57b137","id":"INTERVALS-0001679","index":1679,"input":{"contigs":{"synthetic_A":905,"synthetic_B":1264},"features":[{"basis":"one_closed","contig":"synthetic_A","end":653,"start":617,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":307,"start":202,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":520,"start":465,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":606,"start":497,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":103,"start":8,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":518,"start":505,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":604,"start":536,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":653,"start":617,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[404,453],"query_length":49,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"9108d0e8209d919bad8fadb8d8213235e2cbe02fdea1c6ce187252cf32878ce2","group_id":"9108d0e8209d919bad8fadb8d8213235e2cbe02fdea1c6ce187252cf32878ce2","id":"INTERVALS-0001680","index":1680,"input":{"contigs":{"synthetic_A":607,"synthetic_B":1521},"features":[{"basis":"one_closed","contig":"synthetic_A","end":404,"start":386,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":458,"start":454,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1384,"start":1372,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":783,"start":694,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":331,"start":218,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":453,"start":404,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":63}],"query_bed":[246,309],"query_length":63,"union_overlap_bases":63},"family":"coordinate_conversion","fingerprint":"42b59a2049ad7ed423938033ca77a109778bc8117087a8ee6d758e919a529720","group_id":"42b59a2049ad7ed423938033ca77a109778bc8117087a8ee6d758e919a529720","id":"INTERVALS-0001684","index":1684,"input":{"contigs":{"synthetic_A":638,"synthetic_B":1737},"features":[{"basis":"one_closed","contig":"synthetic_B","end":309,"start":247,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":198,"start":134,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":985,"start":914,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1430,"start":1409,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1032,"start":962,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":309,"start":247,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":15}],"query_bed":[279,294],"query_length":15,"union_overlap_bases":15},"family":"stranded","fingerprint":"340fc3243541d170cb6f6f27fb576699b044120cfe926974fc580d5949c6268b","group_id":"340fc3243541d170cb6f6f27fb576699b044120cfe926974fc580d5949c6268b","id":"INTERVALS-0001698","index":1698,"input":{"contigs":{"synthetic_A":1606,"synthetic_B":1547},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":294,"start":279,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":294,"start":279,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":813,"start":702,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1257,"start":1233,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":761,"start":669,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":197,"start":112,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1432,"start":1368,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1216,"start":1153,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":579,"start":475,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":289,"start":245,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1041,"start":931,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":294,"start":279,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":67}],"query_bed":[529,596],"query_length":67,"union_overlap_bases":67},"family":"coordinate_conversion","fingerprint":"d8747e3266435285600c271a3b1a8f3f11409e70d6d7b9d0ec01e6d8b8f68b41","group_id":"d8747e3266435285600c271a3b1a8f3f11409e70d6d7b9d0ec01e6d8b8f68b41","id":"INTERVALS-0001714","index":1714,"input":{"contigs":{"synthetic_A":1275,"synthetic_B":1240},"features":[{"basis":"one_closed","contig":"synthetic_B","end":596,"start":530,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1135,"start":1097,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":78,"start":1,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":781,"start":723,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":784,"start":748,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":994,"start":880,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":409,"start":408,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":49,"start":35,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":596,"start":530,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":4,"overlap_bases":6}],"query_bed":[71,94],"query_length":23,"union_overlap_bases":6},"family":"touching_boundary","fingerprint":"40d259c8f690b9fadc10fcff2c7a7d9de216ddc3b5d1cce8032ed062a0b4a95d","group_id":"40d259c8f690b9fadc10fcff2c7a7d9de216ddc3b5d1cce8032ed062a0b4a95d","id":"INTERVALS-0001715","index":1715,"input":{"contigs":{"synthetic_A":934,"synthetic_B":1577},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":71,"start":67,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":126,"start":95,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":584,"start":557,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1233,"start":1146,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":106,"start":89,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":443,"start":332,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":279,"start":250,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":370,"start":360,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":505,"start":423,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":192,"start":80,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":70,"start":70,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":94,"start":72,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":6,"overlap_bases":66},{"feature_index":10,"overlap_bases":62},{"feature_index":11,"overlap_bases":7}],"query_bed":[475,541],"query_length":66,"union_overlap_bases":66},"family":"touching_boundary","fingerprint":"5f1ff8b81bb7faa69521022d091c37e89e8cee7fe0e7fc0d5a653871f48a8270","group_id":"5f1ff8b81bb7faa69521022d091c37e89e8cee7fe0e7fc0d5a653871f48a8270","id":"INTERVALS-0001735","index":1735,"input":{"contigs":{"synthetic_A":713,"synthetic_B":907},"features":[{"basis":"one_closed","contig":"synthetic_B","end":475,"start":470,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":557,"start":542,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":64,"start":35,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":123,"start":67,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":321,"start":220,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":539,"start":507,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":568,"start":472,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":249,"start":225,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":176,"start":81,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":563,"start":512,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":582,"start":480,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":487,"start":481,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":541,"start":476,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":26}],"query_bed":[447,473],"query_length":26,"union_overlap_bases":26},"family":"coordinate_conversion","fingerprint":"62e8f8d24a1bfcaf1ed89dc5e9c5c024b0ad21a2d71078854cc7a6cf74747448","group_id":"62e8f8d24a1bfcaf1ed89dc5e9c5c024b0ad21a2d71078854cc7a6cf74747448","id":"INTERVALS-0001754","index":1754,"input":{"contigs":{"synthetic_A":1206,"synthetic_B":1366},"features":[{"basis":"one_closed","contig":"synthetic_B","end":473,"start":448,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":691,"start":669,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":554,"start":509,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":936,"start":898,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":984,"start":921,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1006,"start":982,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":656,"start":595,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":162,"start":124,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":781,"start":766,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":473,"start":448,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":28}],"query_bed":[762,790],"query_length":28,"union_overlap_bases":28},"family":"stranded","fingerprint":"6bb41ece6946ed1fc6665b19bdd788d89a15827d445e67fec4a6d4a14b4b8387","group_id":"6bb41ece6946ed1fc6665b19bdd788d89a15827d445e67fec4a6d4a14b4b8387","id":"INTERVALS-0001763","index":1763,"input":{"contigs":{"synthetic_A":1126,"synthetic_B":1085},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":790,"start":762,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":790,"start":763,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":155,"start":128,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":538,"start":491,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":474,"start":433,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":114,"start":86,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":790,"start":762,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32},{"feature_index":10,"overlap_bases":28}],"query_bed":[92,124],"query_length":32,"union_overlap_bases":32},"family":"coordinate_conversion","fingerprint":"8d113f5c215870a6ecd809c7e172a404706aaf11916136f0704a08bb9a59f138","group_id":"8d113f5c215870a6ecd809c7e172a404706aaf11916136f0704a08bb9a59f138","id":"INTERVALS-0001764","index":1764,"input":{"contigs":{"synthetic_A":635,"synthetic_B":603},"features":[{"basis":"one_closed","contig":"synthetic_A","end":124,"start":93,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":204,"start":203,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":283,"start":220,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":250,"start":213,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":380,"start":316,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":47,"start":15,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":500,"start":405,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":339,"start":235,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":444,"start":381,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":524,"start":454,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":123,"start":96,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":442,"start":360,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":124,"start":93,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":7,"overlap_bases":8}],"query_bed":[98,162],"query_length":64,"union_overlap_bases":8},"family":"touching_boundary","fingerprint":"1e3462127e8a3e51d63a2776c3e50328783d0745bfefd66b692449a8b699dc99","group_id":"1e3462127e8a3e51d63a2776c3e50328783d0745bfefd66b692449a8b699dc99","id":"INTERVALS-0001765","index":1765,"input":{"contigs":{"synthetic_A":672,"synthetic_B":1038},"features":[{"basis":"one_closed","contig":"synthetic_A","end":98,"start":89,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":176,"start":162,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":696,"start":596,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":53,"start":8,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":595,"start":484,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":617,"start":537,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":120,"start":86,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":106,"start":74,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":952,"start":894,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":845,"start":743,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":523,"start":468,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":474,"start":378,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":162,"start":99,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":35}],"query_bed":[530,565],"query_length":35,"union_overlap_bases":35},"family":"coordinate_conversion","fingerprint":"8157a94e34be519920859ad6f3369c36c340ee848a5d5caed4cd88be7b98122e","group_id":"8157a94e34be519920859ad6f3369c36c340ee848a5d5caed4cd88be7b98122e","id":"INTERVALS-0001789","index":1789,"input":{"contigs":{"synthetic_A":1316,"synthetic_B":951},"features":[{"basis":"one_closed","contig":"synthetic_B","end":565,"start":531,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":743,"start":697,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":75,"start":74,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":462,"start":373,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":754,"start":742,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":942,"start":934,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":565,"start":531,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[368,428],"query_length":60,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"f261e05ab1052ff893b911b09240a009806dafdedd9283bcc6c440fcaf051705","group_id":"f261e05ab1052ff893b911b09240a009806dafdedd9283bcc6c440fcaf051705","id":"INTERVALS-0001790","index":1790,"input":{"contigs":{"synthetic_A":1585,"synthetic_B":641},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":368,"start":356,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":442,"start":429,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":581,"start":535,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":500,"start":495,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":351,"start":304,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":381,"start":307,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":658,"start":552,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1371,"start":1325,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":428,"start":369,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":42},{"feature_index":1,"overlap_bases":40}],"query_bed":[304,346],"query_length":42,"union_overlap_bases":42},"family":"nested","fingerprint":"7d17687ea89bfc3056bc417d6390e56849e4d48191b96d06a79ee4550483eaf4","group_id":"7d17687ea89bfc3056bc417d6390e56849e4d48191b96d06a79ee4550483eaf4","id":"INTERVALS-0001796","index":1796,"input":{"contigs":{"synthetic_A":940,"synthetic_B":1095},"features":[{"basis":"one_closed","contig":"synthetic_A","end":351,"start":300,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":345,"start":305,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":120,"start":88,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":701,"start":655,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":691,"start":647,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":290,"start":232,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1025,"start":908,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":346,"start":304,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":53},{"feature_index":1,"overlap_bases":53},{"feature_index":5,"overlap_bases":30}],"query_bed":[425,478],"query_length":53,"union_overlap_bases":53},"family":"coordinate_conversion","fingerprint":"3070ebee2c3406476ea1db92744423843100e98c79cf19e67fc4898ec95401c6","group_id":"3070ebee2c3406476ea1db92744423843100e98c79cf19e67fc4898ec95401c6","id":"INTERVALS-0001804","index":1804,"input":{"contigs":{"synthetic_A":671,"synthetic_B":1534},"features":[{"basis":"one_closed","contig":"synthetic_A","end":478,"start":426,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":517,"start":401,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":529,"start":489,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":707,"start":702,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1376,"start":1284,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":491,"start":449,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":478,"start":426,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":15},{"feature_index":2,"overlap_bases":2}],"query_bed":[748,764],"query_length":16,"union_overlap_bases":16},"family":"overlapping_blocks","fingerprint":"aeab5a26763eff1440bbaefd4152fdf66264fbf55bf004843d0ddd3945e1651f","group_id":"aeab5a26763eff1440bbaefd4152fdf66264fbf55bf004843d0ddd3945e1651f","id":"INTERVALS-0001807","index":1807,"input":{"contigs":{"synthetic_A":1689,"synthetic_B":773},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":751,"start":745,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":764,"start":749,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":767,"start":763,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":182,"start":164,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":626,"start":519,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":567,"start":511,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":573,"start":465,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":355,"start":319,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":564,"start":547,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":218,"start":199,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":764,"start":749,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":17},{"feature_index":1,"overlap_bases":15}],"query_bed":[241,258],"query_length":17,"union_overlap_bases":17},"family":"nested","fingerprint":"2e8fc444d015a7b742175f731d2c77709d44d9f33a9fa7fb1e54b05b7dec32a2","group_id":"2e8fc444d015a7b742175f731d2c77709d44d9f33a9fa7fb1e54b05b7dec32a2","id":"INTERVALS-0001836","index":1836,"input":{"contigs":{"synthetic_A":1062,"synthetic_B":1180},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":263,"start":236,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":257,"start":242,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":882,"start":792,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":943,"start":866,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":197,"start":110,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":785,"start":675,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":182,"start":85,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":645,"start":570,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":646,"start":578,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":415,"start":318,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":496,"start":490,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":258,"start":242,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":15}],"query_bed":[408,423],"query_length":15,"union_overlap_bases":15},"family":"coordinate_conversion","fingerprint":"c881a5869e64ef0266dbee8e7e84342c657ff770cba275c2f2b24f7576838e06","group_id":"c881a5869e64ef0266dbee8e7e84342c657ff770cba275c2f2b24f7576838e06","id":"INTERVALS-0001864","index":1864,"input":{"contigs":{"synthetic_A":1360,"synthetic_B":1772},"features":[{"basis":"one_closed","contig":"synthetic_A","end":423,"start":409,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":385,"start":333,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1483,"start":1412,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":640,"start":525,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":910,"start":817,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":423,"start":409,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":29}],"query_bed":[231,260],"query_length":29,"union_overlap_bases":29},"family":"stranded","fingerprint":"b4e22c3a2608aaf45454f8a71dfd41cc1318f9e4efbf1d15d03674ed7530392c","group_id":"b4e22c3a2608aaf45454f8a71dfd41cc1318f9e4efbf1d15d03674ed7530392c","id":"INTERVALS-0001868","index":1868,"input":{"contigs":{"synthetic_A":1076,"synthetic_B":1230},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":260,"start":231,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":260,"start":231,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":523,"start":508,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":121,"start":44,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":735,"start":638,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":304,"start":302,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":948,"start":904,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":469,"start":362,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":599,"start":481,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":260,"start":231,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":31},{"feature_index":1,"overlap_bases":29},{"feature_index":5,"overlap_bases":15}],"query_bed":[189,220],"query_length":31,"union_overlap_bases":31},"family":"nested","fingerprint":"2ddbb7c41b71f7f5e14a4f9531c53bafb8ca82720f2b543c775deb91a742cbf2","group_id":"2ddbb7c41b71f7f5e14a4f9531c53bafb8ca82720f2b543c775deb91a742cbf2","id":"INTERVALS-0001881","index":1881,"input":{"contigs":{"synthetic_A":1194,"synthetic_B":680},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":225,"start":184,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":219,"start":191,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":848,"start":818,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":467,"start":353,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1059,"start":1035,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":271,"start":205,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":402,"start":310,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":551,"start":523,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":402,"start":333,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":220,"start":190,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":51}],"query_bed":[715,766],"query_length":51,"union_overlap_bases":51},"family":"coordinate_conversion","fingerprint":"c16be8e23f7cc491aeb48ca4f2b6d0621a19259a3b14c777e821e8f174366055","group_id":"c16be8e23f7cc491aeb48ca4f2b6d0621a19259a3b14c777e821e8f174366055","id":"INTERVALS-0001884","index":1884,"input":{"contigs":{"synthetic_A":1180,"synthetic_B":620},"features":[{"basis":"one_closed","contig":"synthetic_A","end":766,"start":716,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":155,"start":142,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":394,"start":355,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":318,"start":272,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":517,"start":457,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":479,"start":422,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":66,"start":50,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":61,"start":2,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":317,"start":249,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":401,"start":359,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":26,"start":12,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":531,"start":426,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":766,"start":716,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46}],"query_bed":[48,94],"query_length":46,"union_overlap_bases":46},"family":"stranded","fingerprint":"67ddfdb0846b11f5c4347ed3d707d065a79038e1fe2860f3bea85e4f564844ed","group_id":"67ddfdb0846b11f5c4347ed3d707d065a79038e1fe2860f3bea85e4f564844ed","id":"INTERVALS-0001903","index":1903,"input":{"contigs":{"synthetic_A":1056,"synthetic_B":1317},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":94,"start":48,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":94,"start":48,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":730,"start":664,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1147,"start":1054,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":749,"start":707,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":958,"start":908,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":376,"start":303,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":652,"start":596,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":212,"start":184,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":28,"start":15,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":527,"start":505,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":870,"start":791,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":94,"start":48,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":61},{"feature_index":1,"overlap_bases":59}],"query_bed":[590,651],"query_length":61,"union_overlap_bases":61},"family":"nested","fingerprint":"edea34f00ce2a74b359d1943dc2e6b80b733aa7d02a18403f3af0f410f72a2d5","group_id":"edea34f00ce2a74b359d1943dc2e6b80b733aa7d02a18403f3af0f410f72a2d5","id":"INTERVALS-0001931","index":1931,"input":{"contigs":{"synthetic_A":1561,"synthetic_B":760},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":656,"start":585,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":650,"start":591,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":549,"start":549,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":293,"start":179,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":156,"start":112,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":919,"start":862,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":385,"start":366,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":265,"start":173,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":507,"start":420,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":339,"start":229,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":651,"start":590,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":71},{"feature_index":1,"overlap_bases":69}],"query_bed":[839,910],"query_length":71,"union_overlap_bases":71},"family":"nested","fingerprint":"5ca2dd9e5efe1df7312469055601f104ed49eb016ceeb11c777984b6ff6bdcc5","group_id":"5ca2dd9e5efe1df7312469055601f104ed49eb016ceeb11c777984b6ff6bdcc5","id":"INTERVALS-0001936","index":1936,"input":{"contigs":{"synthetic_A":1751,"synthetic_B":1357},"features":[{"basis":"one_closed","contig":"synthetic_B","end":915,"start":835,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":909,"start":841,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":866,"start":830,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":546,"start":487,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":99,"start":53,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":858,"start":835,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":676,"start":626,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":910,"start":839,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":31}],"query_bed":[565,596],"query_length":31,"union_overlap_bases":31},"family":"stranded","fingerprint":"a9e408c615b9e6c75b3f85104b401c06e6b1b813cf33bf17171800ff2f37a9a9","group_id":"a9e408c615b9e6c75b3f85104b401c06e6b1b813cf33bf17171800ff2f37a9a9","id":"INTERVALS-0001948","index":1948,"input":{"contigs":{"synthetic_A":1720,"synthetic_B":1040},"features":[{"basis":"one_closed","contig":"synthetic_A","end":596,"start":566,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":596,"start":566,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":581,"start":517,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":116,"start":29,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":287,"start":275,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":971,"start":855,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":99,"start":49,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":482,"start":374,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":730,"start":642,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":567,"start":529,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":211,"start":106,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":596,"start":566,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":22},{"feature_index":2,"overlap_bases":2}],"query_bed":[156,179],"query_length":23,"union_overlap_bases":23},"family":"overlapping_blocks","fingerprint":"ede4cf6a94bd75aec07bc6a979b67ce10cb4ae31f928c7d3fe75149ed02ffa93","group_id":"ede4cf6a94bd75aec07bc6a979b67ce10cb4ae31f928c7d3fe75149ed02ffa93","id":"INTERVALS-0001977","index":1977,"input":{"contigs":{"synthetic_A":1635,"synthetic_B":1712},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":159,"start":153,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":179,"start":157,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":182,"start":177,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":235,"start":131,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1588,"start":1490,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":814,"start":778,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":299,"start":280,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":886,"start":826,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":93,"start":87,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":179,"start":156,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":63}],"query_bed":[1269,1332],"query_length":63,"union_overlap_bases":63},"family":"coordinate_conversion","fingerprint":"5c7d44c6389fcfbee0568290b78cf8ab6d2e4a9f1fd6ea6dd376e48e34391b74","group_id":"5c7d44c6389fcfbee0568290b78cf8ab6d2e4a9f1fd6ea6dd376e48e34391b74","id":"INTERVALS-0001979","index":1979,"input":{"contigs":{"synthetic_A":1144,"synthetic_B":1533},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1332,"start":1270,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":777,"start":708,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":489,"start":480,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":632,"start":624,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":826,"start":776,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":195,"start":185,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":194,"start":174,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1250,"start":1160,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":911,"start":828,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":330,"start":219,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":441,"start":373,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1332,"start":1270,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[356,366],"query_length":10,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"9e3f4594f83b23438699da604247e55610f6b3409ea42e1dcca0398b45bc2c97","group_id":"9e3f4594f83b23438699da604247e55610f6b3409ea42e1dcca0398b45bc2c97","id":"INTERVALS-0001980","index":1980,"input":{"contigs":{"synthetic_A":1135,"synthetic_B":1243},"features":[{"basis":"one_closed","contig":"synthetic_B","end":356,"start":342,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":374,"start":367,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":180,"start":157,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":836,"start":756,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":650,"start":542,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":366,"start":357,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[933,995],"query_length":62,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"7186885aed84fc2b06058c0fc156efd3076818c6684ff91d4254f94376ac5956","group_id":"7186885aed84fc2b06058c0fc156efd3076818c6684ff91d4254f94376ac5956","id":"INTERVALS-0001985","index":1985,"input":{"contigs":{"synthetic_A":1521,"synthetic_B":1549},"features":[{"basis":"one_closed","contig":"synthetic_B","end":933,"start":927,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1011,"start":995,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1450,"start":1359,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":922,"start":828,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":872,"start":761,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1045,"start":1004,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":995,"start":933,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":79},{"feature_index":1,"overlap_bases":77}],"query_bed":[1193,1272],"query_length":79,"union_overlap_bases":79},"family":"nested","fingerprint":"390fdc6034550875873a46538ea71f86930c8caa91c7b89403196687d5e662b4","group_id":"390fdc6034550875873a46538ea71f86930c8caa91c7b89403196687d5e662b4","id":"INTERVALS-0001986","index":1986,"input":{"contigs":{"synthetic_A":1606,"synthetic_B":1498},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1277,"start":1188,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1271,"start":1195,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1352,"start":1348,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":372,"start":255,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":733,"start":672,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":762,"start":715,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1120,"start":1075,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":922,"start":893,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":363,"start":313,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":683,"start":652,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1272,"start":1193,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[824,876],"query_length":52,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"45cba538926c2b183658e206c5c79fdf41173e8b82a136b8bef7fb013401ca12","group_id":"45cba538926c2b183658e206c5c79fdf41173e8b82a136b8bef7fb013401ca12","id":"INTERVALS-0001995","index":1995,"input":{"contigs":{"synthetic_A":1117,"synthetic_B":1272},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":824,"start":814,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":901,"start":876,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":485,"start":473,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":686,"start":618,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":394,"start":373,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":207,"start":201,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":451,"start":416,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":710,"start":644,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":876,"start":825,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":66}],"query_bed":[614,680],"query_length":66,"union_overlap_bases":66},"family":"coordinate_conversion","fingerprint":"b8da0f06045acf21bac9fff0bdd48fef047d86c5cd234338f31a5a3bd28f9e24","group_id":"b8da0f06045acf21bac9fff0bdd48fef047d86c5cd234338f31a5a3bd28f9e24","id":"INTERVALS-0002064","index":2064,"input":{"contigs":{"synthetic_A":1594,"synthetic_B":680},"features":[{"basis":"one_closed","contig":"synthetic_A","end":680,"start":615,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":865,"start":774,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":262,"start":158,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1552,"start":1470,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":117,"start":79,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":508,"start":476,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":408,"start":361,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":182,"start":129,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":350,"start":241,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":555,"start":486,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":883,"start":871,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":680,"start":615,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":21}],"query_bed":[841,862],"query_length":21,"union_overlap_bases":21},"family":"stranded","fingerprint":"bbde9cb2d7ad055138aa72a4ff34d9e2ac09b16b3403afd33889a679a6552864","group_id":"bbde9cb2d7ad055138aa72a4ff34d9e2ac09b16b3403afd33889a679a6552864","id":"INTERVALS-0002073","index":2073,"input":{"contigs":{"synthetic_A":1351,"synthetic_B":691},"features":[{"basis":"one_closed","contig":"synthetic_A","end":862,"start":842,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":862,"start":842,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":125,"start":8,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1218,"start":1175,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":416,"start":362,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1109,"start":1091,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":480,"start":412,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":381,"start":317,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":655,"start":568,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":444,"start":346,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":862,"start":841,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":58}],"query_bed":[957,1015],"query_length":58,"union_overlap_bases":58},"family":"coordinate_conversion","fingerprint":"2089e05aa16599964789b9476795cc73d4c86b56c53c89e139e4c9ba2175e0db","group_id":"2089e05aa16599964789b9476795cc73d4c86b56c53c89e139e4c9ba2175e0db","id":"INTERVALS-0002099","index":2099,"input":{"contigs":{"synthetic_A":1504,"synthetic_B":706},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1015,"start":958,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1396,"start":1310,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":389,"start":324,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":363,"start":319,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":169,"start":55,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":616,"start":506,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":448,"start":335,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":558,"start":454,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":628,"start":528,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":280,"start":219,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":280,"start":211,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1015,"start":958,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":74},{"feature_index":2,"overlap_bases":2}],"query_bed":[74,149],"query_length":75,"union_overlap_bases":75},"family":"overlapping_blocks","fingerprint":"83b276569bc90e642ca28313247ddbd16c6260728d406ae5961666e63a194f38","group_id":"83b276569bc90e642ca28313247ddbd16c6260728d406ae5961666e63a194f38","id":"INTERVALS-0002102","index":2102,"input":{"contigs":{"synthetic_A":907,"synthetic_B":968},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":77,"start":71,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":149,"start":76,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":152,"start":147,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":822,"start":787,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":692,"start":630,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":337,"start":316,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":395,"start":289,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":392,"start":348,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":847,"start":773,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":865,"start":752,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":868,"start":844,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":860,"start":794,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":149,"start":75,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":11}],"query_bed":[1526,1537],"query_length":11,"union_overlap_bases":11},"family":"coordinate_conversion","fingerprint":"6f38c3f6575a701062af6b2e0b3f63fe1d0029737419f1614275739a6f763257","group_id":"6f38c3f6575a701062af6b2e0b3f63fe1d0029737419f1614275739a6f763257","id":"INTERVALS-0002104","index":2104,"input":{"contigs":{"synthetic_A":746,"synthetic_B":1792},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1537,"start":1527,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":187,"start":174,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":442,"start":349,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1204,"start":1157,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":553,"start":513,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":500,"start":400,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1537,"start":1527,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":22},{"feature_index":1,"overlap_bases":20}],"query_bed":[52,74],"query_length":22,"union_overlap_bases":22},"family":"nested","fingerprint":"7f5a689859116ffc69f7db072b5f67c96480a856eb25a3976b65f4b001360d03","group_id":"7f5a689859116ffc69f7db072b5f67c96480a856eb25a3976b65f4b001360d03","id":"INTERVALS-0002116","index":2116,"input":{"contigs":{"synthetic_A":1563,"synthetic_B":1667},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":79,"start":47,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":73,"start":53,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":749,"start":718,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":354,"start":271,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":293,"start":216,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":874,"start":789,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":828,"start":708,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1022,"start":1003,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":657,"start":550,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1259,"start":1151,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":74,"start":53,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46},{"feature_index":2,"overlap_bases":9}],"query_bed":[182,228],"query_length":46,"union_overlap_bases":46},"family":"coordinate_conversion","fingerprint":"d80155104838886b98be633308e9fc8bd96c72bb932a897805498744e9615f4d","group_id":"d80155104838886b98be633308e9fc8bd96c72bb932a897805498744e9615f4d","id":"INTERVALS-0002124","index":2124,"input":{"contigs":{"synthetic_A":898,"synthetic_B":689},"features":[{"basis":"one_closed","contig":"synthetic_A","end":228,"start":183,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":551,"start":519,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":191,"start":154,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":40,"start":5,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":754,"start":701,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":467,"start":355,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":369,"start":293,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":228,"start":183,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":60},{"feature_index":2,"overlap_bases":2}],"query_bed":[976,1037],"query_length":61,"union_overlap_bases":61},"family":"overlapping_blocks","fingerprint":"2b062c1e3f24865d9f9d9c72f15aa99a03d6ebb89f99c2be4a9fef7b1dd52c4e","group_id":"2b062c1e3f24865d9f9d9c72f15aa99a03d6ebb89f99c2be4a9fef7b1dd52c4e","id":"INTERVALS-0002127","index":2127,"input":{"contigs":{"synthetic_A":672,"synthetic_B":1459},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":979,"start":973,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1037,"start":978,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1040,"start":1035,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":218,"start":192,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":232,"start":178,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":427,"start":396,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":246,"start":169,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":544,"start":503,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":353,"start":290,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":105,"start":100,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1037,"start":976,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":62}],"query_bed":[1139,1201],"query_length":62,"union_overlap_bases":62},"family":"coordinate_conversion","fingerprint":"ff292f00fd244875159772ace674f2b43df3cae483bb6cc56122d57d4c020111","group_id":"ff292f00fd244875159772ace674f2b43df3cae483bb6cc56122d57d4c020111","id":"INTERVALS-0002134","index":2134,"input":{"contigs":{"synthetic_A":1544,"synthetic_B":862},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1201,"start":1140,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":509,"start":499,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":45,"start":1,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":495,"start":414,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":324,"start":211,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1201,"start":1140,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[185,225],"query_length":40,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"bc79f7164076c2f60183719dd577932faa287fe77c69dc6b95414f053b4d360c","group_id":"bc79f7164076c2f60183719dd577932faa287fe77c69dc6b95414f053b4d360c","id":"INTERVALS-0002145","index":2145,"input":{"contigs":{"synthetic_A":1362,"synthetic_B":1522},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":185,"start":165,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":231,"start":225,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":977,"start":920,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1158,"start":1106,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1021,"start":970,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":541,"start":427,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":225,"start":185,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":64},{"feature_index":4,"overlap_bases":13}],"query_bed":[732,796],"query_length":64,"union_overlap_bases":64},"family":"coordinate_conversion","fingerprint":"1a14d3f6a3e53bde4a7e57ab01834608432f12f68b6464bc87c4478f6c1ef138","group_id":"1a14d3f6a3e53bde4a7e57ab01834608432f12f68b6464bc87c4478f6c1ef138","id":"INTERVALS-0002149","index":2149,"input":{"contigs":{"synthetic_A":1424,"synthetic_B":1159},"features":[{"basis":"one_closed","contig":"synthetic_B","end":796,"start":733,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":660,"start":595,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1085,"start":1073,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":321,"start":244,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":862,"start":784,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1077,"start":998,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":347,"start":277,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":366,"start":345,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":130,"start":76,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":393,"start":350,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":796,"start":733,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73},{"feature_index":1,"overlap_bases":71}],"query_bed":[655,728],"query_length":73,"union_overlap_bases":73},"family":"nested","fingerprint":"c7634d945ea9e77c193a064901761ddfba6ff0006a500bfdb50b251cfddeb0f0","group_id":"c7634d945ea9e77c193a064901761ddfba6ff0006a500bfdb50b251cfddeb0f0","id":"INTERVALS-0002151","index":2151,"input":{"contigs":{"synthetic_A":1758,"synthetic_B":1420},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":733,"start":650,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":727,"start":656,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":280,"start":210,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":126,"start":101,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1241,"start":1190,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1226,"start":1137,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":792,"start":789,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":471,"start":470,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1660,"start":1612,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":814,"start":723,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":728,"start":655,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":37}],"query_bed":[311,348],"query_length":37,"union_overlap_bases":37},"family":"stranded","fingerprint":"2a29074e0f07f4178ff061b32c650c322d14614fbfd1747745699f89882dbfb2","group_id":"2a29074e0f07f4178ff061b32c650c322d14614fbfd1747745699f89882dbfb2","id":"INTERVALS-0002153","index":2153,"input":{"contigs":{"synthetic_A":1642,"synthetic_B":1656},"features":[{"basis":"one_closed","contig":"synthetic_B","end":348,"start":312,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":348,"start":312,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":264,"start":207,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1336,"start":1267,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":516,"start":490,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1260,"start":1189,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":692,"start":605,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":651,"start":593,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":204,"start":139,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":453,"start":446,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1481,"start":1452,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1420,"start":1316,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":348,"start":311,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":6}],"query_bed":[417,423],"query_length":6,"union_overlap_bases":6},"family":"coordinate_conversion","fingerprint":"86dfaa426d7715cf5a187b4fc24a64ff1c48d26770da2ff39bd3be9ae9765fd3","group_id":"86dfaa426d7715cf5a187b4fc24a64ff1c48d26770da2ff39bd3be9ae9765fd3","id":"INTERVALS-0002169","index":2169,"input":{"contigs":{"synthetic_A":1233,"synthetic_B":1043},"features":[{"basis":"one_closed","contig":"synthetic_B","end":423,"start":418,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":682,"start":617,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":454,"start":362,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":516,"start":499,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":371,"start":309,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":650,"start":573,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":856,"start":842,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":703,"start":615,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":734,"start":644,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":744,"start":686,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":305,"start":229,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":423,"start":418,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18}],"query_bed":[600,618],"query_length":18,"union_overlap_bases":18},"family":"stranded","fingerprint":"eb0223c407d3b1519359ec2d85601ca71f0ea7483431daf6d90996c6ae942ee9","group_id":"eb0223c407d3b1519359ec2d85601ca71f0ea7483431daf6d90996c6ae942ee9","id":"INTERVALS-0002183","index":2183,"input":{"contigs":{"synthetic_A":957,"synthetic_B":828},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":618,"start":600,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":618,"start":601,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":905,"start":805,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":309,"start":281,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":673,"start":596,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":514,"start":412,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":264,"start":149,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":618,"start":601,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[649,682],"query_length":33,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"40419f0070436df4a5d2b1e516c0161f091cb4f023c04ed0c93ae07b8fc7e0cf","group_id":"40419f0070436df4a5d2b1e516c0161f091cb4f023c04ed0c93ae07b8fc7e0cf","id":"INTERVALS-0002185","index":2185,"input":{"contigs":{"synthetic_A":846,"synthetic_B":1053},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":649,"start":640,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":687,"start":682,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":676,"start":593,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":191,"start":189,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":907,"start":790,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":120,"start":36,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":682,"start":649,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":68},{"feature_index":1,"overlap_bases":66}],"query_bed":[840,908],"query_length":68,"union_overlap_bases":68},"family":"nested","fingerprint":"d795128892ae0a6f06867c51f7fb30f4d294da5daa189465e05f7b6216902f53","group_id":"d795128892ae0a6f06867c51f7fb30f4d294da5daa189465e05f7b6216902f53","id":"INTERVALS-0002186","index":2186,"input":{"contigs":{"synthetic_A":1634,"synthetic_B":989},"features":[{"basis":"one_closed","contig":"synthetic_A","end":913,"start":836,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":907,"start":842,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":572,"start":464,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":171,"start":120,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":917,"start":831,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1267,"start":1248,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":476,"start":364,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":24,"start":7,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":971,"start":861,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":292,"start":213,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":908,"start":840,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":58},{"feature_index":2,"overlap_bases":2}],"query_bed":[703,762],"query_length":59,"union_overlap_bases":59},"family":"overlapping_blocks","fingerprint":"d06b3ed81d68087c1cc469900b42c43f7ced159e7873ed1b433dc93c681943fa","group_id":"d06b3ed81d68087c1cc469900b42c43f7ced159e7873ed1b433dc93c681943fa","id":"INTERVALS-0002212","index":2212,"input":{"contigs":{"synthetic_A":1371,"synthetic_B":928},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":706,"start":700,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":762,"start":705,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":765,"start":760,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":548,"start":479,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":243,"start":150,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":78,"start":48,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":212,"start":145,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":642,"start":582,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":362,"start":347,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":128,"start":47,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1043,"start":1010,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":762,"start":703,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":68},{"feature_index":2,"overlap_bases":2}],"query_bed":[829,898],"query_length":69,"union_overlap_bases":69},"family":"overlapping_blocks","fingerprint":"26a90f6ae15b36470dcce04d65588eb5c2eda5183e2f27d3397544696e51e9ad","group_id":"26a90f6ae15b36470dcce04d65588eb5c2eda5183e2f27d3397544696e51e9ad","id":"INTERVALS-0002217","index":2217,"input":{"contigs":{"synthetic_A":774,"synthetic_B":1050},"features":[{"basis":"one_closed","contig":"synthetic_B","end":832,"start":827,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":898,"start":830,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":901,"start":897,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":742,"start":635,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":264,"start":157,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":229,"start":150,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":674,"start":614,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":387,"start":335,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":898,"start":829,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":13},{"feature_index":2,"overlap_bases":2}],"query_bed":[139,153],"query_length":14,"union_overlap_bases":14},"family":"overlapping_blocks","fingerprint":"124cfea03b83c2befbd1b2cade461114e015d72d639ed7967e86752916ff90d8","group_id":"124cfea03b83c2befbd1b2cade461114e015d72d639ed7967e86752916ff90d8","id":"INTERVALS-0002227","index":2227,"input":{"contigs":{"synthetic_A":1450,"synthetic_B":1040},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":142,"start":136,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":153,"start":141,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":156,"start":152,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":485,"start":484,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":999,"start":884,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":872,"start":755,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":153,"start":140,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":23},{"feature_index":1,"overlap_bases":21}],"query_bed":[151,174],"query_length":23,"union_overlap_bases":23},"family":"nested","fingerprint":"aa215c5829c34a85a2811afc8b2ef2a63ddf79aaa3fdfaf17c1b3da0c3e7f1f0","group_id":"aa215c5829c34a85a2811afc8b2ef2a63ddf79aaa3fdfaf17c1b3da0c3e7f1f0","id":"INTERVALS-0002236","index":2236,"input":{"contigs":{"synthetic_A":1378,"synthetic_B":958},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":179,"start":146,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":173,"start":153,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":82,"start":57,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":680,"start":653,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":883,"start":804,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":701,"start":696,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":868,"start":819,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1055,"start":1013,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":14,"start":6,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":748,"start":690,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":672,"start":593,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":174,"start":151,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":67},{"feature_index":2,"overlap_bases":2}],"query_bed":[693,761],"query_length":68,"union_overlap_bases":68},"family":"overlapping_blocks","fingerprint":"1808a31cb71026b52b17bf77645da98fd46476f87f91d8df34852a00c01a7871","group_id":"1808a31cb71026b52b17bf77645da98fd46476f87f91d8df34852a00c01a7871","id":"INTERVALS-0002237","index":2237,"input":{"contigs":{"synthetic_A":1278,"synthetic_B":901},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":696,"start":690,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":761,"start":694,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":764,"start":759,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1147,"start":1110,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":190,"start":185,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":404,"start":350,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":140,"start":79,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":348,"start":276,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":149,"start":98,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":892,"start":815,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":757,"start":709,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":761,"start":694,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":59}],"query_bed":[347,406],"query_length":59,"union_overlap_bases":59},"family":"coordinate_conversion","fingerprint":"56c33d60b1d7f15855b2dc93138ef73d08e658206a14c1735027904296d50d31","group_id":"56c33d60b1d7f15855b2dc93138ef73d08e658206a14c1735027904296d50d31","id":"INTERVALS-0002239","index":2239,"input":{"contigs":{"synthetic_A":1411,"synthetic_B":1437},"features":[{"basis":"one_closed","contig":"synthetic_A","end":406,"start":348,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1218,"start":1180,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":341,"start":285,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":481,"start":402,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":887,"start":835,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":599,"start":481,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":77,"start":9,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1193,"start":1170,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":262,"start":212,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":585,"start":491,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":965,"start":929,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":406,"start":348,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":62},{"feature_index":2,"overlap_bases":2}],"query_bed":[133,196],"query_length":63,"union_overlap_bases":63},"family":"overlapping_blocks","fingerprint":"89e113de8814770d088ebb4a2d29171c11ef9c78cde705b7b4393b95cde0245e","group_id":"89e113de8814770d088ebb4a2d29171c11ef9c78cde705b7b4393b95cde0245e","id":"INTERVALS-0002247","index":2247,"input":{"contigs":{"synthetic_A":1324,"synthetic_B":1613},"features":[{"basis":"one_closed","contig":"synthetic_A","end":136,"start":131,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":196,"start":135,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":199,"start":194,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":670,"start":603,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":568,"start":494,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1043,"start":1029,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":196,"start":134,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":22},{"feature_index":2,"overlap_bases":2}],"query_bed":[245,268],"query_length":23,"union_overlap_bases":23},"family":"overlapping_blocks","fingerprint":"46779ab4c2b3437f092bdfc34584fb9a38e51428176e1c38175c3399171c607d","group_id":"46779ab4c2b3437f092bdfc34584fb9a38e51428176e1c38175c3399171c607d","id":"INTERVALS-0002262","index":2262,"input":{"contigs":{"synthetic_A":813,"synthetic_B":1073},"features":[{"basis":"one_closed","contig":"synthetic_B","end":248,"start":243,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":268,"start":247,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":271,"start":266,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":529,"start":518,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":704,"start":662,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":552,"start":548,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":214,"start":164,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":503,"start":435,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":386,"start":372,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":377,"start":303,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1061,"start":948,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":156,"start":49,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":268,"start":245,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":63},{"feature_index":1,"overlap_bases":61}],"query_bed":[662,725],"query_length":63,"union_overlap_bases":63},"family":"nested","fingerprint":"da75e770001bfcebbbc1044143b229348057ddefe9476df80d5ece74a055e7a7","group_id":"da75e770001bfcebbbc1044143b229348057ddefe9476df80d5ece74a055e7a7","id":"INTERVALS-0002266","index":2266,"input":{"contigs":{"synthetic_A":1558,"synthetic_B":686},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":730,"start":657,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":724,"start":664,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":770,"start":672,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":335,"start":226,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":774,"start":740,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":131,"start":30,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":49,"start":14,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1151,"start":1074,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":448,"start":336,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":938,"start":830,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":725,"start":663,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":53}],"query_bed":[360,413],"query_length":53,"union_overlap_bases":53},"family":"coordinate_conversion","fingerprint":"eccc08be1159803e9f8c51d5175c933bc8baff03d63bbc62a5f3ac93964bb972","group_id":"eccc08be1159803e9f8c51d5175c933bc8baff03d63bbc62a5f3ac93964bb972","id":"INTERVALS-0002279","index":2279,"input":{"contigs":{"synthetic_A":1102,"synthetic_B":1013},"features":[{"basis":"one_closed","contig":"synthetic_B","end":413,"start":361,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":683,"start":631,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":540,"start":505,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":143,"start":77,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":466,"start":437,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":189,"start":133,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":344,"start":332,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":263,"start":217,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":413,"start":361,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":43}],"query_bed":[431,474],"query_length":43,"union_overlap_bases":43},"family":"coordinate_conversion","fingerprint":"29bb143ca6b965f0d1a7fd547867504be3f736acff41c86872042fdfe0408e10","group_id":"29bb143ca6b965f0d1a7fd547867504be3f736acff41c86872042fdfe0408e10","id":"INTERVALS-0002284","index":2284,"input":{"contigs":{"synthetic_A":1143,"synthetic_B":1761},"features":[{"basis":"one_closed","contig":"synthetic_A","end":474,"start":432,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":242,"start":156,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":767,"start":764,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":309,"start":273,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":323,"start":223,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":524,"start":480,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1538,"start":1479,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":913,"start":900,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":171,"start":53,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":221,"start":207,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":214,"start":107,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":474,"start":432,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":18},{"feature_index":2,"overlap_bases":2}],"query_bed":[60,79],"query_length":19,"union_overlap_bases":19},"family":"overlapping_blocks","fingerprint":"e80165ccb87039266c55d177c06b4e952c094c6bd786320d0ff26693a0f8b503","group_id":"e80165ccb87039266c55d177c06b4e952c094c6bd786320d0ff26693a0f8b503","id":"INTERVALS-0002292","index":2292,"input":{"contigs":{"synthetic_A":1746,"synthetic_B":606},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":63,"start":57,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":79,"start":61,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":82,"start":78,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":403,"start":386,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":527,"start":475,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":489,"start":473,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":79,"start":61,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":61},{"feature_index":3,"overlap_bases":19}],"query_bed":[518,579],"query_length":61,"union_overlap_bases":61},"family":"coordinate_conversion","fingerprint":"8f8b6028c499f42f48af6d949a31be8153ceb4c7a546cbc1668c859077b8d184","group_id":"8f8b6028c499f42f48af6d949a31be8153ceb4c7a546cbc1668c859077b8d184","id":"INTERVALS-0002294","index":2294,"input":{"contigs":{"synthetic_A":772,"synthetic_B":1567},"features":[{"basis":"one_closed","contig":"synthetic_A","end":579,"start":519,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":535,"start":522,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":308,"start":220,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":624,"start":561,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":484,"start":391,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1280,"start":1210,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":45,"start":14,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1000,"start":953,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":579,"start":519,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":20},{"feature_index":2,"overlap_bases":2}],"query_bed":[638,659],"query_length":21,"union_overlap_bases":21},"family":"overlapping_blocks","fingerprint":"49b6b804b1b74021ddf74d83a9037ecf35daddfe78a249b7e6ef7d3eab0ad7cc","group_id":"49b6b804b1b74021ddf74d83a9037ecf35daddfe78a249b7e6ef7d3eab0ad7cc","id":"INTERVALS-0002302","index":2302,"input":{"contigs":{"synthetic_A":1120,"synthetic_B":1018},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":641,"start":635,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":659,"start":639,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":662,"start":657,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":616,"start":531,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":809,"start":726,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":268,"start":247,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":659,"start":638,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":52},{"feature_index":1,"overlap_bases":50}],"query_bed":[357,409],"query_length":52,"union_overlap_bases":52},"family":"nested","fingerprint":"98ed3fa6338205a217fcc5afdc7d4b8914cd7d5df507c2cf18075ae1c2ddc14c","group_id":"98ed3fa6338205a217fcc5afdc7d4b8914cd7d5df507c2cf18075ae1c2ddc14c","id":"INTERVALS-0002311","index":2311,"input":{"contigs":{"synthetic_A":1799,"synthetic_B":742},"features":[{"basis":"one_closed","contig":"synthetic_B","end":414,"start":353,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":408,"start":359,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":555,"start":487,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1061,"start":1044,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":290,"start":185,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1041,"start":923,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":173,"start":136,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1205,"start":1151,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1416,"start":1378,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1200,"start":1150,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":409,"start":357,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":75},{"feature_index":1,"overlap_bases":73},{"feature_index":8,"overlap_bases":11}],"query_bed":[128,203],"query_length":75,"union_overlap_bases":75},"family":"nested","fingerprint":"9fb66e343be48898ca47db1137087cdac4a2ae2a878dd3d2b9a6d8432b3da777","group_id":"9fb66e343be48898ca47db1137087cdac4a2ae2a878dd3d2b9a6d8432b3da777","id":"INTERVALS-0002321","index":2321,"input":{"contigs":{"synthetic_A":758,"synthetic_B":719},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":208,"start":123,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":202,"start":129,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":485,"start":369,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":648,"start":590,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":698,"start":620,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":374,"start":310,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":440,"start":397,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":372,"start":324,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":139,"start":117,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":224,"start":138,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":591,"start":505,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":364,"start":290,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":203,"start":128,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":11}],"query_bed":[302,313],"query_length":11,"union_overlap_bases":11},"family":"stranded","fingerprint":"012716ba1e1fdbe73698bd34d132d7c17098b2b9d720963deb830647266da2dc","group_id":"012716ba1e1fdbe73698bd34d132d7c17098b2b9d720963deb830647266da2dc","id":"INTERVALS-0002323","index":2323,"input":{"contigs":{"synthetic_A":1579,"synthetic_B":1722},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":313,"start":302,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":313,"start":302,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":497,"start":477,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":874,"start":855,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":129,"start":86,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":313,"start":303,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":61}],"query_bed":[988,1049],"query_length":61,"union_overlap_bases":61},"family":"coordinate_conversion","fingerprint":"9fb9ce6c5ac9f47e0d7f12e21271fc172386ce5ac47f2b27de7180130999ce4e","group_id":"9fb9ce6c5ac9f47e0d7f12e21271fc172386ce5ac47f2b27de7180130999ce4e","id":"INTERVALS-0002324","index":2324,"input":{"contigs":{"synthetic_A":865,"synthetic_B":1459},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1049,"start":989,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":540,"start":540,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":124,"start":34,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1387,"start":1320,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":65,"start":48,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":764,"start":751,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1049,"start":989,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":48}],"query_bed":[960,1008],"query_length":48,"union_overlap_bases":48},"family":"stranded","fingerprint":"ca47b022a788622f61e24a5b658629d214cd9af6b421a9ee1db789d4e83599f2","group_id":"ca47b022a788622f61e24a5b658629d214cd9af6b421a9ee1db789d4e83599f2","id":"INTERVALS-0002333","index":2333,"input":{"contigs":{"synthetic_A":1181,"synthetic_B":1191},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1008,"start":960,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1008,"start":961,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":723,"start":680,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":503,"start":491,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":90,"start":76,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1008,"start":960,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[591,655],"query_length":64,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"4c86521a48b2a8b2ba159c02788e49673b2d4601ceb12f07716d8e3d28aa3559","group_id":"4c86521a48b2a8b2ba159c02788e49673b2d4601ceb12f07716d8e3d28aa3559","id":"INTERVALS-0002335","index":2335,"input":{"contigs":{"synthetic_A":1681,"synthetic_B":1724},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":591,"start":582,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":688,"start":655,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1335,"start":1225,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1394,"start":1302,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":514,"start":428,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":655,"start":591,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":75}],"query_bed":[622,697],"query_length":75,"union_overlap_bases":75},"family":"coordinate_conversion","fingerprint":"c462e06e4c415af8ccb460d58d1d272f4676e169438c6d8d1735205bc9fc11af","group_id":"c462e06e4c415af8ccb460d58d1d272f4676e169438c6d8d1735205bc9fc11af","id":"INTERVALS-0002339","index":2339,"input":{"contigs":{"synthetic_A":951,"synthetic_B":1145},"features":[{"basis":"one_closed","contig":"synthetic_A","end":697,"start":623,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":806,"start":703,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":367,"start":272,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":602,"start":489,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":285,"start":246,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":775,"start":688,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":257,"start":168,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":814,"start":771,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":697,"start":623,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":23}],"query_bed":[272,295],"query_length":23,"union_overlap_bases":23},"family":"stranded","fingerprint":"de6832e855d434fe429cacbd20d6f62cae3fed610179482a254f2bf9059a324d","group_id":"de6832e855d434fe429cacbd20d6f62cae3fed610179482a254f2bf9059a324d","id":"INTERVALS-0002368","index":2368,"input":{"contigs":{"synthetic_A":1376,"synthetic_B":600},"features":[{"basis":"one_closed","contig":"synthetic_B","end":295,"start":273,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":295,"start":273,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":810,"start":766,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":148,"start":34,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1040,"start":975,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":403,"start":323,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":492,"start":464,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":351,"start":351,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":891,"start":890,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1256,"start":1213,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":137,"start":53,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":162,"start":140,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":295,"start":272,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[407,423],"query_length":16,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"b6e744b66871cc863b291186607b6cc8ae0780b8ec2cbfe35c35bd4274e71de2","group_id":"b6e744b66871cc863b291186607b6cc8ae0780b8ec2cbfe35c35bd4274e71de2","id":"INTERVALS-0002370","index":2370,"input":{"contigs":{"synthetic_A":1473,"synthetic_B":1738},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":407,"start":389,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":428,"start":423,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":123,"start":78,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1341,"start":1231,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":635,"start":604,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":954,"start":855,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":423,"start":407,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":17}],"query_bed":[908,925],"query_length":17,"union_overlap_bases":17},"family":"stranded","fingerprint":"cd3d55de5026721163350d5b698620fda884fc75ba6418a3ea142be3b26bb736","group_id":"cd3d55de5026721163350d5b698620fda884fc75ba6418a3ea142be3b26bb736","id":"INTERVALS-0002373","index":2373,"input":{"contigs":{"synthetic_A":1169,"synthetic_B":1258},"features":[{"basis":"one_closed","contig":"synthetic_A","end":925,"start":909,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":925,"start":908,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":752,"start":742,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":418,"start":412,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":340,"start":273,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":790,"start":736,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":223,"start":200,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":620,"start":568,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":925,"start":909,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32}],"query_bed":[47,79],"query_length":32,"union_overlap_bases":32},"family":"coordinate_conversion","fingerprint":"01aec7e0f9b716324cf41312ba1984c71b02cd894f36fe6a1e5681023bfffe96","group_id":"01aec7e0f9b716324cf41312ba1984c71b02cd894f36fe6a1e5681023bfffe96","id":"INTERVALS-0002374","index":2374,"input":{"contigs":{"synthetic_A":851,"synthetic_B":1051},"features":[{"basis":"one_closed","contig":"synthetic_B","end":79,"start":48,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":801,"start":781,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":274,"start":209,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":323,"start":215,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":525,"start":436,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":486,"start":417,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":435,"start":408,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":180,"start":96,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":79,"start":48,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":62},{"feature_index":1,"overlap_bases":60},{"feature_index":2,"overlap_bases":20}],"query_bed":[517,579],"query_length":62,"union_overlap_bases":62},"family":"nested","fingerprint":"490ec72a574da78632c88846105e5813f2a4a842da3b3f54eeffff9916bec681","group_id":"490ec72a574da78632c88846105e5813f2a4a842da3b3f54eeffff9916bec681","id":"INTERVALS-0002391","index":2391,"input":{"contigs":{"synthetic_A":1520,"synthetic_B":776},"features":[{"basis":"one_closed","contig":"synthetic_B","end":584,"start":513,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":578,"start":518,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":543,"start":524,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":393,"start":388,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":356,"start":292,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":250,"start":248,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":32,"start":23,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":679,"start":594,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":83,"start":23,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":294,"start":254,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":579,"start":518,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":55}],"query_bed":[394,449],"query_length":55,"union_overlap_bases":55},"family":"coordinate_conversion","fingerprint":"8f004f38cfd8dabc788ed7fe4b7f570db58bb1e709af9e02f31a3901f1f7b5f3","group_id":"8f004f38cfd8dabc788ed7fe4b7f570db58bb1e709af9e02f31a3901f1f7b5f3","id":"INTERVALS-0002414","index":2414,"input":{"contigs":{"synthetic_A":802,"synthetic_B":964},"features":[{"basis":"one_closed","contig":"synthetic_A","end":449,"start":395,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":207,"start":184,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":520,"start":404,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":741,"start":651,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":641,"start":524,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":494,"start":482,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":445,"start":364,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":121,"start":71,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":472,"start":466,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":760,"start":651,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":449,"start":395,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":69},{"feature_index":2,"overlap_bases":2}],"query_bed":[501,571],"query_length":70,"union_overlap_bases":70},"family":"overlapping_blocks","fingerprint":"2db94b1c87aac0b1a62d3a9389a024045e0b3d9767c2a6b86d1b655dd025e7df","group_id":"2db94b1c87aac0b1a62d3a9389a024045e0b3d9767c2a6b86d1b655dd025e7df","id":"INTERVALS-0002417","index":2417,"input":{"contigs":{"synthetic_A":1698,"synthetic_B":712},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":504,"start":498,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":571,"start":502,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":574,"start":570,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1401,"start":1367,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":125,"start":41,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":44,"start":12,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":78,"start":5,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":327,"start":317,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":284,"start":200,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":218,"start":211,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":489,"start":463,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1092,"start":983,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":571,"start":502,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[166,211],"query_length":45,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"5a1d0b26910ee892a608f15f216032fae18c635a6755e930be9a559353337533","group_id":"5a1d0b26910ee892a608f15f216032fae18c635a6755e930be9a559353337533","id":"INTERVALS-0002420","index":2420,"input":{"contigs":{"synthetic_A":1038,"synthetic_B":1011},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":166,"start":157,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":245,"start":211,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":747,"start":678,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":837,"start":791,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":569,"start":559,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":377,"start":355,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":211,"start":166,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":67},{"feature_index":1,"overlap_bases":65}],"query_bed":[1206,1273],"query_length":67,"union_overlap_bases":67},"family":"nested","fingerprint":"b3cce484d7483246c9482a161c9e568a3c245a810651b3d589e0e2112bacd869","group_id":"b3cce484d7483246c9482a161c9e568a3c245a810651b3d589e0e2112bacd869","id":"INTERVALS-0002426","index":2426,"input":{"contigs":{"synthetic_A":1524,"synthetic_B":1665},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1278,"start":1201,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1272,"start":1208,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":362,"start":317,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1057,"start":1016,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1375,"start":1345,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":533,"start":465,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1484,"start":1455,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1028,"start":1009,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":368,"start":273,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1273,"start":1207,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":20},{"feature_index":2,"overlap_bases":2}],"query_bed":[431,452],"query_length":21,"union_overlap_bases":21},"family":"overlapping_blocks","fingerprint":"34ac5a2ca61bd6c22e1c543fdf87222a64ac8684f14d1d76146e33ed5f313fe1","group_id":"34ac5a2ca61bd6c22e1c543fdf87222a64ac8684f14d1d76146e33ed5f313fe1","id":"INTERVALS-0002437","index":2437,"input":{"contigs":{"synthetic_A":925,"synthetic_B":1135},"features":[{"basis":"one_closed","contig":"synthetic_B","end":434,"start":429,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":452,"start":432,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":455,"start":451,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":134,"start":55,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":944,"start":933,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":150,"start":30,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":452,"start":432,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":3,"overlap_bases":4}],"query_bed":[1225,1237],"query_length":12,"union_overlap_bases":4},"family":"touching_boundary","fingerprint":"2e7b735ef19682f8ae3c17b93923d20c6e77d14aa8aa61efbc6388093185a7d5","group_id":"2e7b735ef19682f8ae3c17b93923d20c6e77d14aa8aa61efbc6388093185a7d5","id":"INTERVALS-0002440","index":2440,"input":{"contigs":{"synthetic_A":1497,"synthetic_B":865},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1225,"start":1217,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1253,"start":1237,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":195,"start":125,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1260,"start":1234,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":700,"start":698,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1316,"start":1302,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1237,"start":1225,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":72}],"query_bed":[266,338],"query_length":72,"union_overlap_bases":72},"family":"stranded","fingerprint":"888cecce5d1316ab04021ba20525087856be5a53cc4827d8bfe6dfacb2d1324e","group_id":"888cecce5d1316ab04021ba20525087856be5a53cc4827d8bfe6dfacb2d1324e","id":"INTERVALS-0002448","index":2448,"input":{"contigs":{"synthetic_A":1491,"synthetic_B":1724},"features":[{"basis":"one_closed","contig":"synthetic_B","end":338,"start":267,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":338,"start":267,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":977,"start":874,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1082,"start":985,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":450,"start":350,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":809,"start":729,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1127,"start":1028,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":174,"start":146,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1363,"start":1314,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":448,"start":401,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":338,"start":266,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[258,315],"query_length":57,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"27f7099e233bc64c4b19066e254db85bce1759a5b9c02e52bd001714aee06f04","group_id":"27f7099e233bc64c4b19066e254db85bce1759a5b9c02e52bd001714aee06f04","id":"INTERVALS-0002455","index":2455,"input":{"contigs":{"synthetic_A":1556,"synthetic_B":1610},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":258,"start":246,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":336,"start":316,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":151,"start":36,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1014,"start":968,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1379,"start":1310,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":315,"start":259,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":51},{"feature_index":1,"overlap_bases":49}],"query_bed":[196,247],"query_length":51,"union_overlap_bases":51},"family":"nested","fingerprint":"6455ea0e53d2ffe5607ee94e896f0bd3b05e9201cc96eff695d925560988805c","group_id":"6455ea0e53d2ffe5607ee94e896f0bd3b05e9201cc96eff695d925560988805c","id":"INTERVALS-0002461","index":2461,"input":{"contigs":{"synthetic_A":844,"synthetic_B":1107},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":252,"start":191,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":246,"start":197,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":530,"start":417,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":511,"start":462,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":85,"start":4,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":247,"start":196,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":18},{"feature_index":2,"overlap_bases":2}],"query_bed":[1113,1132],"query_length":19,"union_overlap_bases":19},"family":"overlapping_blocks","fingerprint":"d02aa26ace55b6fee0d88df71d49d715ad738d6d5b7a5233fe8d4b0076875453","group_id":"d02aa26ace55b6fee0d88df71d49d715ad738d6d5b7a5233fe8d4b0076875453","id":"INTERVALS-0002462","index":2462,"input":{"contigs":{"synthetic_A":1674,"synthetic_B":1346},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1116,"start":1111,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1132,"start":1115,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1135,"start":1131,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1501,"start":1492,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":598,"start":560,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":179,"start":155,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1132,"start":1113,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":55}],"query_bed":[146,201],"query_length":55,"union_overlap_bases":55},"family":"stranded","fingerprint":"84c2668244dcb8211c21b2a5b07f63f690e5a16f9162f70009ad1a7b3a63b59d","group_id":"84c2668244dcb8211c21b2a5b07f63f690e5a16f9162f70009ad1a7b3a63b59d","id":"INTERVALS-0002473","index":2473,"input":{"contigs":{"synthetic_A":817,"synthetic_B":1789},"features":[{"basis":"one_closed","contig":"synthetic_A","end":201,"start":147,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":201,"start":147,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":213,"start":180,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":602,"start":497,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":423,"start":308,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":710,"start":625,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":201,"start":147,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":48},{"feature_index":1,"overlap_bases":46},{"feature_index":5,"overlap_bases":23}],"query_bed":[778,826],"query_length":48,"union_overlap_bases":48},"family":"nested","fingerprint":"f77aa05ed1d6cb2b3d1ac01b4ad9a2383bd235f3d920354598bd51dfdc31d86e","group_id":"f77aa05ed1d6cb2b3d1ac01b4ad9a2383bd235f3d920354598bd51dfdc31d86e","id":"INTERVALS-0002476","index":2476,"input":{"contigs":{"synthetic_A":1672,"synthetic_B":1348},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":831,"start":773,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":825,"start":779,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":50,"start":3,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1577,"start":1497,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1343,"start":1225,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":858,"start":803,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":692,"start":675,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":646,"start":533,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":959,"start":941,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":552,"start":526,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":414,"start":313,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":494,"start":477,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":826,"start":778,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":57},{"feature_index":1,"overlap_bases":55}],"query_bed":[722,779],"query_length":57,"union_overlap_bases":57},"family":"nested","fingerprint":"cfc000aeaa33059f3cbc434307083b686771bfb161c5d900fa240c0816c948da","group_id":"cfc000aeaa33059f3cbc434307083b686771bfb161c5d900fa240c0816c948da","id":"INTERVALS-0002486","index":2486,"input":{"contigs":{"synthetic_A":916,"synthetic_B":1171},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":784,"start":717,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":778,"start":723,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":296,"start":293,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":902,"start":796,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":313,"start":218,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":428,"start":378,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":604,"start":556,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":396,"start":276,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":779,"start":723,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":33},{"feature_index":1,"overlap_bases":31}],"query_bed":[369,402],"query_length":33,"union_overlap_bases":33},"family":"nested","fingerprint":"76ed4f36d2946bba6e843e1119efe68c9a68f5a305be8a727d531f0357d8c780","group_id":"76ed4f36d2946bba6e843e1119efe68c9a68f5a305be8a727d531f0357d8c780","id":"INTERVALS-0002511","index":2511,"input":{"contigs":{"synthetic_A":1122,"synthetic_B":1527},"features":[{"basis":"one_closed","contig":"synthetic_A","end":407,"start":365,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":401,"start":370,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":855,"start":768,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":429,"start":422,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":764,"start":695,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":402,"start":370,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":26},{"feature_index":2,"overlap_bases":2}],"query_bed":[92,119],"query_length":27,"union_overlap_bases":27},"family":"overlapping_blocks","fingerprint":"bcad1fec6e103ac831804eacd09b9986f3c1429525740e789fd5dff865f1f311","group_id":"bcad1fec6e103ac831804eacd09b9986f3c1429525740e789fd5dff865f1f311","id":"INTERVALS-0002542","index":2542,"input":{"contigs":{"synthetic_A":748,"synthetic_B":1306},"features":[{"basis":"one_closed","contig":"synthetic_A","end":95,"start":90,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":119,"start":93,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":122,"start":117,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":908,"start":854,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":159,"start":90,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":119,"start":93,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":15},{"feature_index":1,"overlap_bases":13}],"query_bed":[667,682],"query_length":15,"union_overlap_bases":15},"family":"nested","fingerprint":"9002fcfa9c53a13af26efa504c7d26a6447ac65091f8510799a38567e1727b68","group_id":"9002fcfa9c53a13af26efa504c7d26a6447ac65091f8510799a38567e1727b68","id":"INTERVALS-0002566","index":2566,"input":{"contigs":{"synthetic_A":1576,"synthetic_B":916},"features":[{"basis":"one_closed","contig":"synthetic_A","end":687,"start":663,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":681,"start":669,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":177,"start":125,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1500,"start":1392,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":819,"start":738,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":732,"start":722,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":682,"start":667,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[259,279],"query_length":20,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"213e3beace518cde5f4efec45ef8abfc282353cd5991611eb5d784ff9bbad2a7","group_id":"213e3beace518cde5f4efec45ef8abfc282353cd5991611eb5d784ff9bbad2a7","id":"INTERVALS-0002570","index":2570,"input":{"contigs":{"synthetic_A":1126,"synthetic_B":1283},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":259,"start":244,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":293,"start":280,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":669,"start":611,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":423,"start":375,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":594,"start":591,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":179,"start":106,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":396,"start":284,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":272,"start":252,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":880,"start":788,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":279,"start":259,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":19}],"query_bed":[454,473],"query_length":19,"union_overlap_bases":19},"family":"stranded","fingerprint":"720e7774509a17995db81c6cdc4c561076b5bdfa4b08cc5af3622c7d602d2586","group_id":"720e7774509a17995db81c6cdc4c561076b5bdfa4b08cc5af3622c7d602d2586","id":"INTERVALS-0002588","index":2588,"input":{"contigs":{"synthetic_A":1274,"synthetic_B":925},"features":[{"basis":"one_closed","contig":"synthetic_B","end":473,"start":455,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":473,"start":455,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1052,"start":1045,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":611,"start":581,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":353,"start":311,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":473,"start":455,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":72},{"feature_index":1,"overlap_bases":70},{"feature_index":2,"overlap_bases":4}],"query_bed":[424,496],"query_length":72,"union_overlap_bases":72},"family":"nested","fingerprint":"8cf42db8e6bbc95a5e22e25ff32e89f23ef74fcf10548317a3dec0b343991647","group_id":"8cf42db8e6bbc95a5e22e25ff32e89f23ef74fcf10548317a3dec0b343991647","id":"INTERVALS-0002591","index":2591,"input":{"contigs":{"synthetic_A":965,"synthetic_B":1443},"features":[{"basis":"one_closed","contig":"synthetic_A","end":501,"start":420,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":495,"start":425,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":539,"start":493,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":316,"start":238,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1299,"start":1191,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":451,"start":426,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":496,"start":424,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[382,398],"query_length":16,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e5b2905c037a216c4d0172bd6970a76e89166f04ed2f43cd5e4cb48b74f0d391","group_id":"e5b2905c037a216c4d0172bd6970a76e89166f04ed2f43cd5e4cb48b74f0d391","id":"INTERVALS-0002595","index":2595,"input":{"contigs":{"synthetic_A":1565,"synthetic_B":687},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":382,"start":379,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":406,"start":399,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":174,"start":97,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":635,"start":547,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":480,"start":450,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":192,"start":99,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1295,"start":1243,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1461,"start":1428,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":536,"start":482,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":533,"start":458,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":208,"start":202,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":84,"start":7,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":398,"start":382,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":77},{"feature_index":2,"overlap_bases":2}],"query_bed":[883,961],"query_length":78,"union_overlap_bases":78},"family":"overlapping_blocks","fingerprint":"a66d1ef8d6e38b40fa6f1d68f91843617ae4550047368a76302f4461dd1072be","group_id":"a66d1ef8d6e38b40fa6f1d68f91843617ae4550047368a76302f4461dd1072be","id":"INTERVALS-0002622","index":2622,"input":{"contigs":{"synthetic_A":1272,"synthetic_B":701},"features":[{"basis":"one_closed","contig":"synthetic_A","end":886,"start":881,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":961,"start":884,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":964,"start":960,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":612,"start":520,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":260,"start":242,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":961,"start":884,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":8},{"feature_index":2,"overlap_bases":2}],"query_bed":[344,353],"query_length":9,"union_overlap_bases":9},"family":"overlapping_blocks","fingerprint":"6921187ea3c6b2cbfed3870c8367b4544e711d4efeb448bf73608e3bb4eb7ae0","group_id":"6921187ea3c6b2cbfed3870c8367b4544e711d4efeb448bf73608e3bb4eb7ae0","id":"INTERVALS-0002632","index":2632,"input":{"contigs":{"synthetic_A":767,"synthetic_B":980},"features":[{"basis":"one_closed","contig":"synthetic_B","end":347,"start":342,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":353,"start":346,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":356,"start":351,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":712,"start":668,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":432,"start":419,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":843,"start":762,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":353,"start":344,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":43},{"feature_index":1,"overlap_bases":41}],"query_bed":[235,278],"query_length":43,"union_overlap_bases":43},"family":"nested","fingerprint":"104d0c4ecd11f5cc632af7845db8ca0c057774707aa8625a59a4e18322703cbf","group_id":"104d0c4ecd11f5cc632af7845db8ca0c057774707aa8625a59a4e18322703cbf","id":"INTERVALS-0002636","index":2636,"input":{"contigs":{"synthetic_A":1196,"synthetic_B":987},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":283,"start":230,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":277,"start":237,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":676,"start":674,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":367,"start":255,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":477,"start":427,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":140,"start":53,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":893,"start":826,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":225,"start":131,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":596,"start":562,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":441,"start":365,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":278,"start":235,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":45},{"feature_index":2,"overlap_bases":2}],"query_bed":[432,478],"query_length":46,"union_overlap_bases":46},"family":"overlapping_blocks","fingerprint":"24ff35fe7834007e5f2566861c24ae32d246f02b1e2aacebd3b421ab1ff5dd57","group_id":"24ff35fe7834007e5f2566861c24ae32d246f02b1e2aacebd3b421ab1ff5dd57","id":"INTERVALS-0002637","index":2637,"input":{"contigs":{"synthetic_A":859,"synthetic_B":1272},"features":[{"basis":"one_closed","contig":"synthetic_A","end":435,"start":430,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":478,"start":433,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":481,"start":476,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":60,"start":30,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":556,"start":547,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":478,"start":432,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":13}],"query_bed":[445,458],"query_length":13,"union_overlap_bases":13},"family":"stranded","fingerprint":"d3f80c5c57e5e2ed106ff2140f2bd0f6132319b1264dfade5a736c9ffba4327a","group_id":"d3f80c5c57e5e2ed106ff2140f2bd0f6132319b1264dfade5a736c9ffba4327a","id":"INTERVALS-0002653","index":2653,"input":{"contigs":{"synthetic_A":1095,"synthetic_B":1708},"features":[{"basis":"one_closed","contig":"synthetic_A","end":458,"start":446,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":458,"start":445,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":768,"start":730,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":480,"start":402,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":152,"start":147,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":458,"start":445,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":61}],"query_bed":[727,788],"query_length":61,"union_overlap_bases":61},"family":"stranded","fingerprint":"ab2ff50a38d6d543ac03b81e0ba7f677679b2cf3c15385467f16dc5b47aa6643","group_id":"ab2ff50a38d6d543ac03b81e0ba7f677679b2cf3c15385467f16dc5b47aa6643","id":"INTERVALS-0002673","index":2673,"input":{"contigs":{"synthetic_A":1022,"synthetic_B":952},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":788,"start":727,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":788,"start":727,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":299,"start":279,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":422,"start":366,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":416,"start":384,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":846,"start":746,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":939,"start":829,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":256,"start":188,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":788,"start":728,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":59}],"query_bed":[529,588],"query_length":59,"union_overlap_bases":59},"family":"coordinate_conversion","fingerprint":"75095ed05c6a30104d1e6ca2a80c21f6d01c12718763ec6e0b38bba1f5b435d8","group_id":"75095ed05c6a30104d1e6ca2a80c21f6d01c12718763ec6e0b38bba1f5b435d8","id":"INTERVALS-0002684","index":2684,"input":{"contigs":{"synthetic_A":705,"synthetic_B":1175},"features":[{"basis":"one_closed","contig":"synthetic_B","end":588,"start":530,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":878,"start":800,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":928,"start":928,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":113,"start":91,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":141,"start":116,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1072,"start":975,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":557,"start":456,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":460,"start":385,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":916,"start":915,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":164,"start":90,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":588,"start":530,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":36}],"query_bed":[1064,1100],"query_length":36,"union_overlap_bases":36},"family":"coordinate_conversion","fingerprint":"30692e2c09a4e595b1cdffbf5cad7b3baf377c763665b796dbd2b543af3debdb","group_id":"30692e2c09a4e595b1cdffbf5cad7b3baf377c763665b796dbd2b543af3debdb","id":"INTERVALS-0002694","index":2694,"input":{"contigs":{"synthetic_A":1665,"synthetic_B":1691},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1100,"start":1065,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":557,"start":552,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":327,"start":288,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":867,"start":821,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1530,"start":1515,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1436,"start":1369,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1505,"start":1492,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":474,"start":426,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1129,"start":1122,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":357,"start":326,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1100,"start":1065,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[547,573],"query_length":26,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"3941f5c4ad13cb04906d9bd716c87e78203211a50c3aeea181ab7f8af5cc9502","group_id":"3941f5c4ad13cb04906d9bd716c87e78203211a50c3aeea181ab7f8af5cc9502","id":"INTERVALS-0002700","index":2700,"input":{"contigs":{"synthetic_A":1452,"synthetic_B":769},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":547,"start":529,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":609,"start":573,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":294,"start":289,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":585,"start":538,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":760,"start":756,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":632,"start":525,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":620,"start":507,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":144,"start":74,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":621,"start":569,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1179,"start":1143,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1058,"start":1057,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":610,"start":570,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":573,"start":548,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":24}],"query_bed":[553,577],"query_length":24,"union_overlap_bases":24},"family":"stranded","fingerprint":"8188eb1248e9fc3a0343676ff503015b9a15f68395d9752a23d2b49b931a9e92","group_id":"8188eb1248e9fc3a0343676ff503015b9a15f68395d9752a23d2b49b931a9e92","id":"INTERVALS-0002713","index":2713,"input":{"contigs":{"synthetic_A":1349,"synthetic_B":1319},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":577,"start":553,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":577,"start":554,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":194,"start":174,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":544,"start":531,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1049,"start":959,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1272,"start":1163,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":111,"start":8,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1005,"start":997,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":577,"start":554,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":37}],"query_bed":[562,599],"query_length":37,"union_overlap_bases":37},"family":"coordinate_conversion","fingerprint":"fe708aaec62e699dd10741406a9c9f91948eaec405a232379b5b851d81d9cccb","group_id":"fe708aaec62e699dd10741406a9c9f91948eaec405a232379b5b851d81d9cccb","id":"INTERVALS-0002734","index":2734,"input":{"contigs":{"synthetic_A":1460,"synthetic_B":1160},"features":[{"basis":"one_closed","contig":"synthetic_A","end":599,"start":563,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":681,"start":641,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":118,"start":102,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":390,"start":317,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":277,"start":244,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":231,"start":197,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1014,"start":920,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1067,"start":995,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":946,"start":946,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":638,"start":566,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":599,"start":563,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":2,"overlap_bases":46},{"feature_index":6,"overlap_bases":40}],"query_bed":[304,354],"query_length":50,"union_overlap_bases":46},"family":"touching_boundary","fingerprint":"507a903e7a992f83a51f6e804999b967abb3b88cde5932f8421d73e0a68ff57c","group_id":"507a903e7a992f83a51f6e804999b967abb3b88cde5932f8421d73e0a68ff57c","id":"INTERVALS-0002735","index":2735,"input":{"contigs":{"synthetic_A":1300,"synthetic_B":668},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":304,"start":289,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":375,"start":354,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":350,"start":302,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":573,"start":545,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":625,"start":555,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":251,"start":223,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":344,"start":254,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":940,"start":909,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":418,"start":396,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":968,"start":850,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":164,"start":53,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1121,"start":1008,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":354,"start":304,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":59},{"feature_index":1,"overlap_bases":57}],"query_bed":[382,441],"query_length":59,"union_overlap_bases":59},"family":"nested","fingerprint":"26aec9b48b712315f89dada36774cf535dc2223d4c88c684ec5b86786d696325","group_id":"26aec9b48b712315f89dada36774cf535dc2223d4c88c684ec5b86786d696325","id":"INTERVALS-0002746","index":2746,"input":{"contigs":{"synthetic_A":1044,"synthetic_B":1308},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":446,"start":377,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":440,"start":383,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":767,"start":692,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":687,"start":598,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":427,"start":415,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":687,"start":645,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":641,"start":633,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":688,"start":630,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":441,"start":382,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":42}],"query_bed":[155,197],"query_length":42,"union_overlap_bases":42},"family":"stranded","fingerprint":"37d75fd00b59cbb6bed23fafcaeb084a556523a93f4ba277623ef61b51f1a582","group_id":"37d75fd00b59cbb6bed23fafcaeb084a556523a93f4ba277623ef61b51f1a582","id":"INTERVALS-0002753","index":2753,"input":{"contigs":{"synthetic_A":735,"synthetic_B":1463},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":197,"start":155,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":197,"start":155,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":149,"start":59,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":439,"start":345,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":600,"start":571,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":245,"start":218,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":197,"start":156,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":50},{"feature_index":2,"overlap_bases":2}],"query_bed":[77,128],"query_length":51,"union_overlap_bases":51},"family":"overlapping_blocks","fingerprint":"c6ed364004517354a1a0d1a7075b46873dbb382b68ad7e2975e565fa7f18e80b","group_id":"c6ed364004517354a1a0d1a7075b46873dbb382b68ad7e2975e565fa7f18e80b","id":"INTERVALS-0002772","index":2772,"input":{"contigs":{"synthetic_A":881,"synthetic_B":1047},"features":[{"basis":"one_closed","contig":"synthetic_B","end":80,"start":75,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":128,"start":78,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":131,"start":127,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":347,"start":252,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":418,"start":350,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":524,"start":497,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":128,"start":77,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":78}],"query_bed":[829,907],"query_length":78,"union_overlap_bases":78},"family":"coordinate_conversion","fingerprint":"952fa926f3750ad6b9518f106e713894d59f251dd084ffcb4a7e78a8451b8c82","group_id":"952fa926f3750ad6b9518f106e713894d59f251dd084ffcb4a7e78a8451b8c82","id":"INTERVALS-0002794","index":2794,"input":{"contigs":{"synthetic_A":1501,"synthetic_B":1344},"features":[{"basis":"one_closed","contig":"synthetic_B","end":907,"start":830,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1223,"start":1182,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":858,"start":782,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1144,"start":1138,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":979,"start":930,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":743,"start":717,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":708,"start":590,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":709,"start":668,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":195,"start":115,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":414,"start":343,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":457,"start":433,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1041,"start":941,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":907,"start":830,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":67}],"query_bed":[115,182],"query_length":67,"union_overlap_bases":67},"family":"coordinate_conversion","fingerprint":"5d2f6714205e43ee83d45f80061dd9042bef29c3eb2f4f4e67e9eeb2497f96eb","group_id":"5d2f6714205e43ee83d45f80061dd9042bef29c3eb2f4f4e67e9eeb2497f96eb","id":"INTERVALS-0002799","index":2799,"input":{"contigs":{"synthetic_A":779,"synthetic_B":1155},"features":[{"basis":"one_closed","contig":"synthetic_A","end":182,"start":116,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":923,"start":879,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":235,"start":173,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":598,"start":491,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":746,"start":664,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":730,"start":660,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":467,"start":362,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":573,"start":524,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":182,"start":116,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":9},{"feature_index":2,"overlap_bases":2}],"query_bed":[532,542],"query_length":10,"union_overlap_bases":10},"family":"overlapping_blocks","fingerprint":"2e8f46aea5d538753d2587017a094d6b6062e856c44a097da6394cfd27730aa1","group_id":"2e8f46aea5d538753d2587017a094d6b6062e856c44a097da6394cfd27730aa1","id":"INTERVALS-0002802","index":2802,"input":{"contigs":{"synthetic_A":1082,"synthetic_B":824},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":535,"start":529,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":542,"start":534,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":545,"start":541,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":987,"start":877,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":292,"start":283,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":586,"start":546,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":588,"start":587,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":727,"start":628,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":542,"start":532,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":23}],"query_bed":[412,435],"query_length":23,"union_overlap_bases":23},"family":"stranded","fingerprint":"c05f9872b2f18ff1ccab781e6b3a8990901464297d437e868a5e6c71756c0f78","group_id":"c05f9872b2f18ff1ccab781e6b3a8990901464297d437e868a5e6c71756c0f78","id":"INTERVALS-0002818","index":2818,"input":{"contigs":{"synthetic_A":757,"synthetic_B":724},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":435,"start":412,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":435,"start":413,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":611,"start":517,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":605,"start":545,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":340,"start":270,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":613,"start":596,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":225,"start":138,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":435,"start":413,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":7,"overlap_bases":63}],"query_bed":[428,507],"query_length":79,"union_overlap_bases":63},"family":"touching_boundary","fingerprint":"d84a2c7cc79c5f1c220c697424df84b844ddf1af17124c4602e55f4b98e185bd","group_id":"d84a2c7cc79c5f1c220c697424df84b844ddf1af17124c4602e55f4b98e185bd","id":"INTERVALS-0002830","index":2830,"input":{"contigs":{"synthetic_A":1298,"synthetic_B":872},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":428,"start":424,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":511,"start":507,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":943,"start":844,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":772,"start":723,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":792,"start":688,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":718,"start":623,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":769,"start":709,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":491,"start":406,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":507,"start":428,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":14},{"feature_index":1,"overlap_bases":12}],"query_bed":[688,702],"query_length":14,"union_overlap_bases":14},"family":"nested","fingerprint":"9381dda6ebc619d3075d0aaddb6006665c19409b54d3dbd050be30ed1470a3f4","group_id":"9381dda6ebc619d3075d0aaddb6006665c19409b54d3dbd050be30ed1470a3f4","id":"INTERVALS-0002856","index":2856,"input":{"contigs":{"synthetic_A":762,"synthetic_B":1726},"features":[{"basis":"one_closed","contig":"synthetic_B","end":707,"start":684,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":701,"start":689,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":598,"start":505,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":414,"start":300,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1465,"start":1397,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":702,"start":688,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":76},{"feature_index":2,"overlap_bases":2},{"feature_index":3,"overlap_bases":17}],"query_bed":[542,619],"query_length":77,"union_overlap_bases":77},"family":"overlapping_blocks","fingerprint":"a66a9f347f829319fdca3081241a734e96df359e555a26256d7b98e08945f930","group_id":"a66a9f347f829319fdca3081241a734e96df359e555a26256d7b98e08945f930","id":"INTERVALS-0002867","index":2867,"input":{"contigs":{"synthetic_A":1137,"synthetic_B":1323},"features":[{"basis":"one_closed","contig":"synthetic_B","end":545,"start":540,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":619,"start":543,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":622,"start":617,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":642,"start":602,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":101,"start":65,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":430,"start":328,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1041,"start":1009,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":802,"start":706,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1016,"start":935,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":502,"start":391,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":347,"start":311,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":619,"start":543,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":27},{"feature_index":1,"overlap_bases":25}],"query_bed":[384,411],"query_length":27,"union_overlap_bases":27},"family":"nested","fingerprint":"9412d7b6ecc2da1d07d7b73aabcfefa1d5d35bb3e6512c60ff78a85fa7c03f3c","group_id":"9412d7b6ecc2da1d07d7b73aabcfefa1d5d35bb3e6512c60ff78a85fa7c03f3c","id":"INTERVALS-0002871","index":2871,"input":{"contigs":{"synthetic_A":1559,"synthetic_B":1204},"features":[{"basis":"one_closed","contig":"synthetic_B","end":416,"start":380,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":410,"start":386,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":795,"start":706,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":247,"start":183,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":242,"start":229,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":411,"start":384,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73}],"query_bed":[483,556],"query_length":73,"union_overlap_bases":73},"family":"coordinate_conversion","fingerprint":"3fde666a2dfc21fe62d195ca068eb48324144f1ba73ab08ae81f807d5757d6bd","group_id":"3fde666a2dfc21fe62d195ca068eb48324144f1ba73ab08ae81f807d5757d6bd","id":"INTERVALS-0002874","index":2874,"input":{"contigs":{"synthetic_A":1164,"synthetic_B":1242},"features":[{"basis":"one_closed","contig":"synthetic_B","end":556,"start":484,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":939,"start":917,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":121,"start":86,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":992,"start":979,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":925,"start":821,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":556,"start":484,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":34},{"feature_index":2,"overlap_bases":2}],"query_bed":[331,366],"query_length":35,"union_overlap_bases":35},"family":"overlapping_blocks","fingerprint":"c030c2c2eb914d6d6d05a031909d91f3fd24b262359e167a7d13dd547f2209c2","group_id":"c030c2c2eb914d6d6d05a031909d91f3fd24b262359e167a7d13dd547f2209c2","id":"INTERVALS-0002882","index":2882,"input":{"contigs":{"synthetic_A":1474,"synthetic_B":992},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":334,"start":328,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":366,"start":332,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":369,"start":364,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":113,"start":64,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":715,"start":609,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":863,"start":850,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":434,"start":416,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":535,"start":510,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":167,"start":68,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":286,"start":250,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1164,"start":1136,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":366,"start":331,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":58}],"query_bed":[92,150],"query_length":58,"union_overlap_bases":58},"family":"coordinate_conversion","fingerprint":"0c1e9f3e426d83090d216ae6774e7a4034c4625b0cd893d6bac7f3ed677cdc68","group_id":"0c1e9f3e426d83090d216ae6774e7a4034c4625b0cd893d6bac7f3ed677cdc68","id":"INTERVALS-0002909","index":2909,"input":{"contigs":{"synthetic_A":872,"synthetic_B":716},"features":[{"basis":"one_closed","contig":"synthetic_B","end":150,"start":93,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":295,"start":225,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":295,"start":224,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":301,"start":239,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":216,"start":176,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":563,"start":474,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":501,"start":396,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":242,"start":223,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":199,"start":172,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":150,"start":93,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":13},{"feature_index":1,"overlap_bases":11}],"query_bed":[746,759],"query_length":13,"union_overlap_bases":13},"family":"nested","fingerprint":"dac7d77e4b2c535a371cec2cfc61a84e883204fb21bc1cea55359b2c64d5e011","group_id":"dac7d77e4b2c535a371cec2cfc61a84e883204fb21bc1cea55359b2c64d5e011","id":"INTERVALS-0002926","index":2926,"input":{"contigs":{"synthetic_A":1331,"synthetic_B":1055},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":764,"start":741,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":758,"start":747,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1076,"start":1073,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":672,"start":615,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":306,"start":269,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":664,"start":652,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":759,"start":746,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":58}],"query_bed":[822,880],"query_length":58,"union_overlap_bases":58},"family":"stranded","fingerprint":"4a7305ea16984ff04923b04d818074dfc44ae1fe74e78cd23a78c6ac48c54269","group_id":"4a7305ea16984ff04923b04d818074dfc44ae1fe74e78cd23a78c6ac48c54269","id":"INTERVALS-0002928","index":2928,"input":{"contigs":{"synthetic_A":1521,"synthetic_B":1726},"features":[{"basis":"one_closed","contig":"synthetic_B","end":880,"start":823,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":880,"start":823,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1080,"start":961,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":237,"start":130,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":212,"start":176,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1199,"start":1106,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":691,"start":634,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":239,"start":147,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":485,"start":451,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":880,"start":822,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":51},{"feature_index":1,"overlap_bases":49}],"query_bed":[283,334],"query_length":51,"union_overlap_bases":51},"family":"nested","fingerprint":"d65a3d6215f3b45a10de493205e76278af6519f31414fa28ce269d0349062921","group_id":"d65a3d6215f3b45a10de493205e76278af6519f31414fa28ce269d0349062921","id":"INTERVALS-0002931","index":2931,"input":{"contigs":{"synthetic_A":1248,"synthetic_B":1280},"features":[{"basis":"one_closed","contig":"synthetic_B","end":339,"start":279,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":333,"start":285,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":30,"start":13,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":629,"start":555,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":139,"start":90,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":830,"start":746,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1002,"start":974,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":853,"start":768,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":557,"start":529,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":471,"start":401,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":615,"start":536,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":334,"start":284,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[94,130],"query_length":36,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"0a429f62d3a0db70e5cca7515d3ff5627f129504cd645b3c7e9a015c0a2a0549","group_id":"0a429f62d3a0db70e5cca7515d3ff5627f129504cd645b3c7e9a015c0a2a0549","id":"INTERVALS-0002950","index":2950,"input":{"contigs":{"synthetic_A":1318,"synthetic_B":1038},"features":[{"basis":"one_closed","contig":"synthetic_A","end":94,"start":93,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":147,"start":131,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1051,"start":1042,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":181,"start":103,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1137,"start":1070,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":235,"start":200,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":140,"start":106,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":446,"start":354,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":130,"start":95,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":71},{"feature_index":1,"overlap_bases":69}],"query_bed":[1310,1381],"query_length":71,"union_overlap_bases":71},"family":"nested","fingerprint":"366d20443e11f7f195b857b12eccd080ae2fa5d632755ebda41e8e0be939dc9b","group_id":"366d20443e11f7f195b857b12eccd080ae2fa5d632755ebda41e8e0be939dc9b","id":"INTERVALS-0002951","index":2951,"input":{"contigs":{"synthetic_A":677,"synthetic_B":1515},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1386,"start":1306,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1380,"start":1311,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":551,"start":440,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":332,"start":318,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":406,"start":405,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":706,"start":686,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1381,"start":1310,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":9}],"query_bed":[108,117],"query_length":9,"union_overlap_bases":9},"family":"stranded","fingerprint":"f92b8d3cf3bab3f56d18f10486ec38f4ec950e47c5943a4fec5ef87503f7f5f4","group_id":"f92b8d3cf3bab3f56d18f10486ec38f4ec950e47c5943a4fec5ef87503f7f5f4","id":"INTERVALS-0002958","index":2958,"input":{"contigs":{"synthetic_A":1174,"synthetic_B":1602},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":117,"start":108,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":117,"start":109,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":906,"start":818,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":486,"start":471,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1474,"start":1358,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1468,"start":1422,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":433,"start":400,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":150,"start":114,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":156,"start":65,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":117,"start":108,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":65},{"feature_index":2,"overlap_bases":2}],"query_bed":[327,393],"query_length":66,"union_overlap_bases":66},"family":"overlapping_blocks","fingerprint":"84913e4005c173d2907427cf724934194a300e2eef6bac63cdb4dbb6c701c741","group_id":"84913e4005c173d2907427cf724934194a300e2eef6bac63cdb4dbb6c701c741","id":"INTERVALS-0002977","index":2977,"input":{"contigs":{"synthetic_A":1566,"synthetic_B":1793},"features":[{"basis":"one_closed","contig":"synthetic_A","end":330,"start":325,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":393,"start":328,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":396,"start":391,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1274,"start":1272,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1131,"start":1113,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":393,"start":327,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":2,"overlap_bases":21}],"query_bed":[274,295],"query_length":21,"union_overlap_bases":21},"family":"touching_boundary","fingerprint":"f4e6fd0681e3845db975454cf49c889f9a4d339b5937e3ed2e13c64afd573d40","group_id":"f4e6fd0681e3845db975454cf49c889f9a4d339b5937e3ed2e13c64afd573d40","id":"INTERVALS-0002995","index":2995,"input":{"contigs":{"synthetic_A":916,"synthetic_B":1722},"features":[{"basis":"one_closed","contig":"synthetic_B","end":274,"start":260,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":321,"start":295,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":302,"start":227,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":839,"start":722,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":795,"start":754,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1262,"start":1179,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1477,"start":1400,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":295,"start":274,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":41},{"feature_index":2,"overlap_bases":2}],"query_bed":[515,557],"query_length":42,"union_overlap_bases":42},"family":"overlapping_blocks","fingerprint":"c0e7ca9ed00153aa4ebdf1a832606b515d620cf63d38d80e4c32a4cc88675227","group_id":"c0e7ca9ed00153aa4ebdf1a832606b515d620cf63d38d80e4c32a4cc88675227","id":"INTERVALS-0002997","index":2997,"input":{"contigs":{"synthetic_A":1600,"synthetic_B":848},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":518,"start":512,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":557,"start":516,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":560,"start":555,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":720,"start":637,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":671,"start":640,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1356,"start":1278,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":347,"start":257,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":323,"start":251,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":326,"start":293,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":557,"start":516,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":37},{"feature_index":2,"overlap_bases":2},{"feature_index":4,"overlap_bases":18}],"query_bed":[300,338],"query_length":38,"union_overlap_bases":38},"family":"overlapping_blocks","fingerprint":"a7fc43ca9081e26d7f88271360e197de05786824f1fa73c96a8b759a17fff800","group_id":"a7fc43ca9081e26d7f88271360e197de05786824f1fa73c96a8b759a17fff800","id":"INTERVALS-0003007","index":3007,"input":{"contigs":{"synthetic_A":1238,"synthetic_B":1774},"features":[{"basis":"one_closed","contig":"synthetic_B","end":303,"start":298,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":338,"start":301,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":341,"start":336,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":188,"start":84,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":412,"start":320,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":959,"start":886,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":992,"start":983,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":338,"start":300,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":28}],"query_bed":[390,418],"query_length":28,"union_overlap_bases":28},"family":"stranded","fingerprint":"4bd99e2640dbcaa576b16f2c1046ee5bf8e05a0a318e06717e95e7baec0185f9","group_id":"4bd99e2640dbcaa576b16f2c1046ee5bf8e05a0a318e06717e95e7baec0185f9","id":"INTERVALS-0003008","index":3008,"input":{"contigs":{"synthetic_A":723,"synthetic_B":723},"features":[{"basis":"one_closed","contig":"synthetic_B","end":418,"start":391,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":418,"start":391,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":429,"start":357,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":472,"start":367,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":156,"start":106,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":298,"start":195,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":169,"start":123,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":152,"start":95,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":287,"start":252,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":418,"start":390,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":14},{"feature_index":2,"overlap_bases":2}],"query_bed":[677,692],"query_length":15,"union_overlap_bases":15},"family":"overlapping_blocks","fingerprint":"02582f740e4f7969ab4709d7eb327158375f4e0dc2d47107c18b4b6334835ab1","group_id":"02582f740e4f7969ab4709d7eb327158375f4e0dc2d47107c18b4b6334835ab1","id":"INTERVALS-0003012","index":3012,"input":{"contigs":{"synthetic_A":1506,"synthetic_B":1114},"features":[{"basis":"one_closed","contig":"synthetic_B","end":680,"start":675,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":692,"start":678,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":695,"start":690,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1277,"start":1183,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":535,"start":526,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":906,"start":858,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1015,"start":991,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":280,"start":258,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":692,"start":677,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":51},{"feature_index":2,"overlap_bases":2}],"query_bed":[490,542],"query_length":52,"union_overlap_bases":52},"family":"overlapping_blocks","fingerprint":"294b4cd8195dd60794747c14eff40858b599f0955f824d1900adcd0bcca5b227","group_id":"294b4cd8195dd60794747c14eff40858b599f0955f824d1900adcd0bcca5b227","id":"INTERVALS-0003017","index":3017,"input":{"contigs":{"synthetic_A":1169,"synthetic_B":1486},"features":[{"basis":"one_closed","contig":"synthetic_A","end":493,"start":488,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":542,"start":492,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":545,"start":541,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":393,"start":289,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":295,"start":250,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":615,"start":596,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":746,"start":631,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":307,"start":277,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":695,"start":687,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":542,"start":491,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[601,613],"query_length":12,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"be6b90accfe9a127fcc01efce749c900b777bd1f70b2c35b70ff01270d23e7ac","group_id":"be6b90accfe9a127fcc01efce749c900b777bd1f70b2c35b70ff01270d23e7ac","id":"INTERVALS-0003020","index":3020,"input":{"contigs":{"synthetic_A":1058,"synthetic_B":1786},"features":[{"basis":"one_closed","contig":"synthetic_A","end":601,"start":590,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":633,"start":613,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":388,"start":333,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":706,"start":592,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1683,"start":1571,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":535,"start":531,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":92,"start":6,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":601,"start":570,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":913,"start":806,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":917,"start":891,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":613,"start":601,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":25}],"query_bed":[229,254],"query_length":25,"union_overlap_bases":25},"family":"coordinate_conversion","fingerprint":"5b1c1d32958505956e28b0923e599a5499f6e4a6a4032e6ebed4cbd73b2ce7e0","group_id":"5b1c1d32958505956e28b0923e599a5499f6e4a6a4032e6ebed4cbd73b2ce7e0","id":"INTERVALS-0003024","index":3024,"input":{"contigs":{"synthetic_A":1454,"synthetic_B":991},"features":[{"basis":"one_closed","contig":"synthetic_B","end":254,"start":230,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1296,"start":1288,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1335,"start":1229,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":667,"start":628,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":644,"start":549,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":244,"start":138,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":939,"start":830,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":242,"start":168,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":237,"start":162,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":114,"start":19,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":254,"start":230,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73},{"feature_index":1,"overlap_bases":71}],"query_bed":[235,308],"query_length":73,"union_overlap_bases":73},"family":"nested","fingerprint":"50796d9ef5aba0cad490353cbe2975e493006d33831d97cd64b5b199c15a1951","group_id":"50796d9ef5aba0cad490353cbe2975e493006d33831d97cd64b5b199c15a1951","id":"INTERVALS-0003031","index":3031,"input":{"contigs":{"synthetic_A":1475,"synthetic_B":1607},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":313,"start":230,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":307,"start":236,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":106,"start":46,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":104,"start":38,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":406,"start":312,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":839,"start":824,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1377,"start":1300,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":308,"start":236,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":72},{"feature_index":4,"overlap_bases":61}],"query_bed":[684,756],"query_length":72,"union_overlap_bases":72},"family":"coordinate_conversion","fingerprint":"7333be3e03cd4b7eb0a37211fabd30c0640e8d374b7b01f290cee7703d747191","group_id":"7333be3e03cd4b7eb0a37211fabd30c0640e8d374b7b01f290cee7703d747191","id":"INTERVALS-0003034","index":3034,"input":{"contigs":{"synthetic_A":1777,"synthetic_B":1205},"features":[{"basis":"one_closed","contig":"synthetic_B","end":756,"start":685,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":253,"start":171,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":214,"start":179,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":308,"start":263,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":745,"start":684,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1031,"start":1025,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":238,"start":214,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":817,"start":757,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":203,"start":104,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":572,"start":517,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":756,"start":685,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":9},{"feature_index":3,"overlap_bases":9},{"feature_index":6,"overlap_bases":9}],"query_bed":[633,642],"query_length":9,"union_overlap_bases":9},"family":"stranded","fingerprint":"8f8775dae818716c60f29e108fd52d27c86fbc06a409506569ddb5bf27e1bebd","group_id":"8f8775dae818716c60f29e108fd52d27c86fbc06a409506569ddb5bf27e1bebd","id":"INTERVALS-0003038","index":3038,"input":{"contigs":{"synthetic_A":1526,"synthetic_B":892},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":642,"start":633,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":642,"start":633,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":157,"start":40,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":722,"start":617,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":334,"start":327,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":509,"start":412,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":657,"start":624,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":422,"start":331,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":60,"start":44,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":811,"start":744,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":364,"start":281,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":727,"start":687,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":642,"start":634,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":70},{"feature_index":2,"overlap_bases":2}],"query_bed":[375,446],"query_length":71,"union_overlap_bases":71},"family":"overlapping_blocks","fingerprint":"31d1187ecac319a969333ff3cd83ae0ec892f3ced82bf4cc215a07b1e7d2a1a6","group_id":"31d1187ecac319a969333ff3cd83ae0ec892f3ced82bf4cc215a07b1e7d2a1a6","id":"INTERVALS-0003042","index":3042,"input":{"contigs":{"synthetic_A":1520,"synthetic_B":1755},"features":[{"basis":"one_closed","contig":"synthetic_B","end":378,"start":373,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":446,"start":376,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":449,"start":444,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":117,"start":33,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1196,"start":1132,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1110,"start":1056,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":907,"start":849,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":790,"start":672,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1020,"start":957,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1037,"start":993,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":446,"start":376,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":61}],"query_bed":[290,351],"query_length":61,"union_overlap_bases":61},"family":"coordinate_conversion","fingerprint":"561f5c4aba3c01d854e375101f8b965eb7a219c4feb0d4e799ee572b89473564","group_id":"561f5c4aba3c01d854e375101f8b965eb7a219c4feb0d4e799ee572b89473564","id":"INTERVALS-0003054","index":3054,"input":{"contigs":{"synthetic_A":1486,"synthetic_B":1721},"features":[{"basis":"one_closed","contig":"synthetic_A","end":351,"start":291,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":287,"start":210,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1435,"start":1371,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1039,"start":930,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":729,"start":655,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":98,"start":54,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":547,"start":489,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":421,"start":311,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":698,"start":657,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":351,"start":291,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":21}],"query_bed":[555,576],"query_length":21,"union_overlap_bases":21},"family":"stranded","fingerprint":"1b490512251242197752c24ddfe1a331e7cf22632afe12a400f51a117e937b80","group_id":"1b490512251242197752c24ddfe1a331e7cf22632afe12a400f51a117e937b80","id":"INTERVALS-0003063","index":3063,"input":{"contigs":{"synthetic_A":1757,"synthetic_B":777},"features":[{"basis":"one_closed","contig":"synthetic_A","end":576,"start":556,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":576,"start":555,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":82,"start":0,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1067,"start":956,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1234,"start":1214,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":179,"start":81,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1281,"start":1224,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":544,"start":445,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":247,"start":219,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":633,"start":583,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":576,"start":555,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":63}],"query_bed":[238,301],"query_length":63,"union_overlap_bases":63},"family":"stranded","fingerprint":"e36d2d0cba6ed739fa31d46f71a8cc4b996d71f8b41e171fd478d1c351a93589","group_id":"e36d2d0cba6ed739fa31d46f71a8cc4b996d71f8b41e171fd478d1c351a93589","id":"INTERVALS-0003068","index":3068,"input":{"contigs":{"synthetic_A":1326,"synthetic_B":869},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":301,"start":238,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":301,"start":239,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":728,"start":631,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":584,"start":573,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":617,"start":541,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":754,"start":644,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":904,"start":862,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":956,"start":918,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":834,"start":816,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1076,"start":968,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1029,"start":983,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":425,"start":314,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":301,"start":238,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[222,270],"query_length":48,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"455f61203cad8860fbd72752ddd51b610a781ea374d36f97373964b0b226357c","group_id":"455f61203cad8860fbd72752ddd51b610a781ea374d36f97373964b0b226357c","id":"INTERVALS-0003070","index":3070,"input":{"contigs":{"synthetic_A":663,"synthetic_B":1124},"features":[{"basis":"one_closed","contig":"synthetic_A","end":222,"start":207,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":288,"start":270,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":563,"start":541,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":399,"start":382,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":999,"start":913,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":64,"start":37,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":651,"start":579,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":564,"start":551,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":522,"start":457,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":270,"start":223,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":20}],"query_bed":[1122,1142],"query_length":20,"union_overlap_bases":20},"family":"coordinate_conversion","fingerprint":"4295abd4e62291cc62cf51517f0178e9bcd42bb4d4d171d3a271d19423401123","group_id":"4295abd4e62291cc62cf51517f0178e9bcd42bb4d4d171d3a271d19423401123","id":"INTERVALS-0003079","index":3079,"input":{"contigs":{"synthetic_A":1689,"synthetic_B":964},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1142,"start":1123,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":764,"start":759,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":505,"start":437,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1581,"start":1496,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":107,"start":24,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":831,"start":754,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":845,"start":813,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1142,"start":1123,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":26},{"feature_index":2,"overlap_bases":2}],"query_bed":[1089,1116],"query_length":27,"union_overlap_bases":27},"family":"overlapping_blocks","fingerprint":"5eeca1de7d0d1424f92871b5c5743b63aa8ccd518ea9365818f03c2f1f01a1a3","group_id":"5eeca1de7d0d1424f92871b5c5743b63aa8ccd518ea9365818f03c2f1f01a1a3","id":"INTERVALS-0003082","index":3082,"input":{"contigs":{"synthetic_A":1338,"synthetic_B":1615},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1092,"start":1086,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1116,"start":1090,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1119,"start":1115,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":303,"start":212,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":660,"start":543,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":182,"start":84,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1114,"start":1007,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":944,"start":850,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":666,"start":654,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":684,"start":599,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1116,"start":1089,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[125,147],"query_length":22,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"c6107a343e5019fa1f16473593bbc364b35430fdf50eff518c83b182ecc04342","group_id":"c6107a343e5019fa1f16473593bbc364b35430fdf50eff518c83b182ecc04342","id":"INTERVALS-0003090","index":3090,"input":{"contigs":{"synthetic_A":1343,"synthetic_B":963},"features":[{"basis":"one_closed","contig":"synthetic_B","end":125,"start":107,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":169,"start":148,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":221,"start":189,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":447,"start":443,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":95,"start":8,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":875,"start":797,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1118,"start":1076,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":844,"start":803,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":85,"start":25,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":147,"start":126,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":29},{"feature_index":1,"overlap_bases":27},{"feature_index":4,"overlap_bases":29}],"query_bed":[186,215],"query_length":29,"union_overlap_bases":29},"family":"nested","fingerprint":"c829b6d22226f0d97477c58c4b83e337acfa860f8d004e5762eba295a6ccc3fe","group_id":"c829b6d22226f0d97477c58c4b83e337acfa860f8d004e5762eba295a6ccc3fe","id":"INTERVALS-0003091","index":3091,"input":{"contigs":{"synthetic_A":761,"synthetic_B":1505},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":220,"start":181,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":214,"start":188,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":70,"start":54,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":865,"start":846,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":288,"start":174,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":272,"start":239,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":221,"start":209,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":641,"start":542,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":143,"start":100,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":72,"start":31,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":215,"start":186,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":16}],"query_bed":[64,80],"query_length":16,"union_overlap_bases":16},"family":"coordinate_conversion","fingerprint":"2ea07636c15128271df4732c75d650d182dd42d73877be681cccce847808eb4a","group_id":"2ea07636c15128271df4732c75d650d182dd42d73877be681cccce847808eb4a","id":"INTERVALS-0003094","index":3094,"input":{"contigs":{"synthetic_A":1150,"synthetic_B":1777},"features":[{"basis":"one_closed","contig":"synthetic_B","end":80,"start":65,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1239,"start":1229,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":653,"start":630,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":893,"start":858,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1195,"start":1125,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":871,"start":865,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":80,"start":65,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":78},{"feature_index":1,"overlap_bases":76},{"feature_index":4,"overlap_bases":45}],"query_bed":[440,518],"query_length":78,"union_overlap_bases":78},"family":"nested","fingerprint":"513b85a031724b8788e078cec3fb2139bb37a65914e25d01be0d9d1145689d3a","group_id":"513b85a031724b8788e078cec3fb2139bb37a65914e25d01be0d9d1145689d3a","id":"INTERVALS-0003096","index":3096,"input":{"contigs":{"synthetic_A":1303,"synthetic_B":825},"features":[{"basis":"one_closed","contig":"synthetic_B","end":523,"start":436,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":517,"start":442,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":230,"start":180,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":560,"start":459,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":485,"start":378,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":518,"start":441,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":74},{"feature_index":5,"overlap_bases":35},{"feature_index":8,"overlap_bases":2}],"query_bed":[227,301],"query_length":74,"union_overlap_bases":74},"family":"stranded","fingerprint":"fe3a16225f7edfcba6b991b35fd9ce27aa77597732babefddee7d2f1f512a240","group_id":"fe3a16225f7edfcba6b991b35fd9ce27aa77597732babefddee7d2f1f512a240","id":"INTERVALS-0003098","index":3098,"input":{"contigs":{"synthetic_A":1069,"synthetic_B":823},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":301,"start":227,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":301,"start":228,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":177,"start":124,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":847,"start":732,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":163,"start":78,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":376,"start":266,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":746,"start":699,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1002,"start":896,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":229,"start":226,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":301,"start":227,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[471,504],"query_length":33,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"afc2d10a60e00fd23584f78cb3593d92608c16c947d213ee1acaa33439cf37ca","group_id":"afc2d10a60e00fd23584f78cb3593d92608c16c947d213ee1acaa33439cf37ca","id":"INTERVALS-0003140","index":3140,"input":{"contigs":{"synthetic_A":1487,"synthetic_B":642},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":471,"start":469,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":535,"start":504,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":207,"start":139,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":307,"start":223,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1007,"start":935,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":297,"start":297,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":240,"start":204,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":134,"start":87,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":327,"start":217,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":504,"start":472,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":42},{"feature_index":3,"overlap_bases":30}],"query_bed":[455,497],"query_length":42,"union_overlap_bases":42},"family":"coordinate_conversion","fingerprint":"1b516f4ab13239dfd6809cdb72f12217379124382d626a33687cbffb0b73240b","group_id":"1b516f4ab13239dfd6809cdb72f12217379124382d626a33687cbffb0b73240b","id":"INTERVALS-0003144","index":3144,"input":{"contigs":{"synthetic_A":1329,"synthetic_B":1662},"features":[{"basis":"one_closed","contig":"synthetic_A","end":497,"start":456,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1211,"start":1096,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":612,"start":493,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":578,"start":468,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":770,"start":744,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":396,"start":384,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":574,"start":547,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1576,"start":1482,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1583,"start":1504,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1117,"start":1113,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":497,"start":456,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":7},{"feature_index":1,"overlap_bases":5}],"query_bed":[602,609],"query_length":7,"union_overlap_bases":7},"family":"nested","fingerprint":"9a499a34eae845b72282ce9dd47d3d1e35f03cea5d26f215ce2c9b8a07a4c01e","group_id":"9a499a34eae845b72282ce9dd47d3d1e35f03cea5d26f215ce2c9b8a07a4c01e","id":"INTERVALS-0003146","index":3146,"input":{"contigs":{"synthetic_A":1422,"synthetic_B":1783},"features":[{"basis":"one_closed","contig":"synthetic_A","end":614,"start":598,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":608,"start":604,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":904,"start":816,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":655,"start":547,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":519,"start":497,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":546,"start":533,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":482,"start":376,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":694,"start":648,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":883,"start":858,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":609,"start":602,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1319,1360],"query_length":41,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"c65e5146904f28be8f312e9d981dfb8230cb4a9c8e77ddf3e09540ca1a171aa4","group_id":"c65e5146904f28be8f312e9d981dfb8230cb4a9c8e77ddf3e09540ca1a171aa4","id":"INTERVALS-0003155","index":3155,"input":{"contigs":{"synthetic_A":1328,"synthetic_B":1789},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1319,"start":1316,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1387,"start":1360,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1089,"start":1086,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":654,"start":642,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":117,"start":35,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":857,"start":777,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":366,"start":322,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":638,"start":592,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1360,"start":1320,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":35},{"feature_index":2,"overlap_bases":2}],"query_bed":[202,238],"query_length":36,"union_overlap_bases":36},"family":"overlapping_blocks","fingerprint":"0f6a1092f3f7542a55c9497326cdf7d97ab6d55f30e8c55d00454362e79c4ffa","group_id":"0f6a1092f3f7542a55c9497326cdf7d97ab6d55f30e8c55d00454362e79c4ffa","id":"INTERVALS-0003157","index":3157,"input":{"contigs":{"synthetic_A":1092,"synthetic_B":814},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":205,"start":199,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":238,"start":204,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":241,"start":236,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":397,"start":384,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":366,"start":337,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":101,"start":71,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":238,"start":203,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":62}],"query_bed":[859,921],"query_length":62,"union_overlap_bases":62},"family":"coordinate_conversion","fingerprint":"91d16b3e5fb803cf5f844ed0aa17fc28f0eb51b5d7ee6698731c6635a6863b24","group_id":"91d16b3e5fb803cf5f844ed0aa17fc28f0eb51b5d7ee6698731c6635a6863b24","id":"INTERVALS-0003174","index":3174,"input":{"contigs":{"synthetic_A":1539,"synthetic_B":1203},"features":[{"basis":"one_closed","contig":"synthetic_A","end":921,"start":860,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":429,"start":419,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":663,"start":631,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":777,"start":739,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":167,"start":58,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1023,"start":933,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":347,"start":262,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":254,"start":237,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1105,"start":1053,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":331,"start":223,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":921,"start":860,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":80}],"query_bed":[430,510],"query_length":80,"union_overlap_bases":80},"family":"stranded","fingerprint":"2622bed8ca6355c0c684e24acfd0e1e0e3e4855ca3419ebcf753ed62428b3c38","group_id":"2622bed8ca6355c0c684e24acfd0e1e0e3e4855ca3419ebcf753ed62428b3c38","id":"INTERVALS-0003193","index":3193,"input":{"contigs":{"synthetic_A":990,"synthetic_B":1275},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":510,"start":430,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":510,"start":431,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":307,"start":268,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1039,"start":996,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":740,"start":649,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1052,"start":999,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":708,"start":648,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":207,"start":182,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":872,"start":754,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1107,"start":1086,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":838,"start":724,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":510,"start":431,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":61},{"feature_index":2,"overlap_bases":59}],"query_bed":[670,731],"query_length":61,"union_overlap_bases":61},"family":"stranded","fingerprint":"29bbfc124a77376da905cccaa66d6ee7336fcc3dbbc30481282e9ad2826e957c","group_id":"29bbfc124a77376da905cccaa66d6ee7336fcc3dbbc30481282e9ad2826e957c","id":"INTERVALS-0003208","index":3208,"input":{"contigs":{"synthetic_A":1381,"synthetic_B":1706},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":731,"start":670,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":731,"start":670,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":729,"start":649,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":80,"start":55,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":467,"start":421,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":552,"start":517,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":731,"start":671,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[357,382],"query_length":25,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"00f732c41204eddaac4b7043a7b6e6b2d3eb0e666bf02fa70ae2e46d6b2a490d","group_id":"00f732c41204eddaac4b7043a7b6e6b2d3eb0e666bf02fa70ae2e46d6b2a490d","id":"INTERVALS-0003230","index":3230,"input":{"contigs":{"synthetic_A":1617,"synthetic_B":1324},"features":[{"basis":"one_closed","contig":"synthetic_B","end":357,"start":338,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":418,"start":382,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":171,"start":79,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":990,"start":890,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":621,"start":512,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1468,"start":1394,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":593,"start":566,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":537,"start":439,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":462,"start":399,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1131,"start":1101,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":382,"start":358,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":52},{"feature_index":1,"overlap_bases":50}],"query_bed":[428,480],"query_length":52,"union_overlap_bases":52},"family":"nested","fingerprint":"97f882682a053ff93ec81255b77e346c889f1b6c5310896e34610ede6f14b2ba","group_id":"97f882682a053ff93ec81255b77e346c889f1b6c5310896e34610ede6f14b2ba","id":"INTERVALS-0003236","index":3236,"input":{"contigs":{"synthetic_A":949,"synthetic_B":982},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":485,"start":423,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":479,"start":429,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":166,"start":141,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":506,"start":465,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":874,"start":765,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":92,"start":54,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":714,"start":642,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":160,"start":126,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":493,"start":413,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":480,"start":428,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":69},{"feature_index":6,"overlap_bases":12}],"query_bed":[260,329],"query_length":69,"union_overlap_bases":69},"family":"stranded","fingerprint":"944bfce45587f50297f5684567f06c3caf418c125e74b25a0a7bd4401cd094fb","group_id":"944bfce45587f50297f5684567f06c3caf418c125e74b25a0a7bd4401cd094fb","id":"INTERVALS-0003253","index":3253,"input":{"contigs":{"synthetic_A":1056,"synthetic_B":603},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":329,"start":260,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":329,"start":261,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":35,"start":15,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":409,"start":363,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":479,"start":453,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":37,"start":36,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":397,"start":318,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":211,"start":99,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":539,"start":484,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":329,"start":260,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":71},{"feature_index":1,"overlap_bases":69},{"feature_index":10,"overlap_bases":54}],"query_bed":[177,248],"query_length":71,"union_overlap_bases":71},"family":"nested","fingerprint":"128996c61e95ee131e0ac6a4b65efb74e27a93c4f9415de762f2abec1110c82c","group_id":"128996c61e95ee131e0ac6a4b65efb74e27a93c4f9415de762f2abec1110c82c","id":"INTERVALS-0003276","index":3276,"input":{"contigs":{"synthetic_A":1115,"synthetic_B":900},"features":[{"basis":"one_closed","contig":"synthetic_A","end":253,"start":173,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":247,"start":179,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":764,"start":746,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":584,"start":545,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":157,"start":111,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":131,"start":127,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":74,"start":22,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":184,"start":113,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":346,"start":299,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":323,"start":295,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":262,"start":194,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":581,"start":512,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":248,"start":177,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1023,1052],"query_length":29,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"fdf550501cbb22b5f9bf3a3b6bf3473adb9f0d97aab6db772d0a2da1e62a5f2d","group_id":"fdf550501cbb22b5f9bf3a3b6bf3473adb9f0d97aab6db772d0a2da1e62a5f2d","id":"INTERVALS-0003280","index":3280,"input":{"contigs":{"synthetic_A":1669,"synthetic_B":1041},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1023,"start":1011,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1053,"start":1053,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":103,"start":53,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":971,"start":892,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":72,"start":61,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1052,"start":1023,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":23},{"feature_index":1,"overlap_bases":21}],"query_bed":[580,603],"query_length":23,"union_overlap_bases":23},"family":"nested","fingerprint":"cf672bdc9d0e83fc33f4934486848840f92c41ac73d9da450b4676c05ce262d5","group_id":"cf672bdc9d0e83fc33f4934486848840f92c41ac73d9da450b4676c05ce262d5","id":"INTERVALS-0003296","index":3296,"input":{"contigs":{"synthetic_A":1133,"synthetic_B":1501},"features":[{"basis":"one_closed","contig":"synthetic_A","end":608,"start":576,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":602,"start":581,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":693,"start":619,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":947,"start":912,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1132,"start":1014,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":654,"start":541,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1028,"start":1001,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":553,"start":439,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":823,"start":721,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1410,"start":1335,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":603,"start":580,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":56},{"feature_index":2,"overlap_bases":2}],"query_bed":[55,112],"query_length":57,"union_overlap_bases":57},"family":"overlapping_blocks","fingerprint":"6eafa4189f5b60ff7fbca9e1021d6dcaa39ab9a3d753df1bf83c760423c04237","group_id":"6eafa4189f5b60ff7fbca9e1021d6dcaa39ab9a3d753df1bf83c760423c04237","id":"INTERVALS-0003317","index":3317,"input":{"contigs":{"synthetic_A":800,"synthetic_B":1313},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":58,"start":52,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":112,"start":56,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":115,"start":111,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":122,"start":19,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":771,"start":669,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":387,"start":281,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1296,"start":1182,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":112,"start":55,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":4,"overlap_bases":38}],"query_bed":[387,437],"query_length":50,"union_overlap_bases":38},"family":"touching_boundary","fingerprint":"c28b648cadb97a1c346263cd53f081b09320c0c7ecd1624538485ce5768c0adb","group_id":"c28b648cadb97a1c346263cd53f081b09320c0c7ecd1624538485ce5768c0adb","id":"INTERVALS-0003320","index":3320,"input":{"contigs":{"synthetic_A":661,"synthetic_B":1676},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":387,"start":381,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":470,"start":438,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":230,"start":137,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":111,"start":31,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":425,"start":349,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":363,"start":265,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":201,"start":89,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1398,"start":1385,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":414,"start":354,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":437,"start":388,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":34},{"feature_index":2,"overlap_bases":2}],"query_bed":[780,815],"query_length":35,"union_overlap_bases":35},"family":"overlapping_blocks","fingerprint":"7be725c09bf993f3d1237585ade9c876a90b349ae997de631032900576aa7f9c","group_id":"7be725c09bf993f3d1237585ade9c876a90b349ae997de631032900576aa7f9c","id":"INTERVALS-0003322","index":3322,"input":{"contigs":{"synthetic_A":1306,"synthetic_B":1358},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":783,"start":777,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":815,"start":782,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":818,"start":814,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":754,"start":641,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1201,"start":1098,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":544,"start":488,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":271,"start":160,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":585,"start":540,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":815,"start":781,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":17},{"feature_index":1,"overlap_bases":15},{"feature_index":6,"overlap_bases":17}],"query_bed":[557,574],"query_length":17,"union_overlap_bases":17},"family":"nested","fingerprint":"a69941f40f440bff02fe946ffd230876b7b6c38aa3d9e37091553026367ed776","group_id":"a69941f40f440bff02fe946ffd230876b7b6c38aa3d9e37091553026367ed776","id":"INTERVALS-0003341","index":3341,"input":{"contigs":{"synthetic_A":1545,"synthetic_B":782},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":579,"start":552,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":573,"start":558,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":340,"start":312,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1014,"start":976,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1103,"start":1091,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":434,"start":353,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":591,"start":543,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":244,"start":207,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1468,"start":1356,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":662,"start":598,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":610,"start":494,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":415,"start":378,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":574,"start":557,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":71}],"query_bed":[760,831],"query_length":71,"union_overlap_bases":71},"family":"coordinate_conversion","fingerprint":"d2a605f28d14bc4bf2db5799c1f6699a9a4b3260c3e0268278c7206d49053865","group_id":"d2a605f28d14bc4bf2db5799c1f6699a9a4b3260c3e0268278c7206d49053865","id":"INTERVALS-0003349","index":3349,"input":{"contigs":{"synthetic_A":1099,"synthetic_B":1336},"features":[{"basis":"one_closed","contig":"synthetic_B","end":831,"start":761,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1206,"start":1105,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1255,"start":1165,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":882,"start":795,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":633,"start":581,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":400,"start":359,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":951,"start":875,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":928,"start":830,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":875,"start":785,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":831,"start":761,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":76},{"feature_index":8,"overlap_bases":51},{"feature_index":9,"overlap_bases":38}],"query_bed":[30,106],"query_length":76,"union_overlap_bases":76},"family":"stranded","fingerprint":"6207d21238ef5d0da775f2a331004237f1d261fd34df235522c387b5acb9eb07","group_id":"6207d21238ef5d0da775f2a331004237f1d261fd34df235522c387b5acb9eb07","id":"INTERVALS-0003358","index":3358,"input":{"contigs":{"synthetic_A":898,"synthetic_B":1243},"features":[{"basis":"one_closed","contig":"synthetic_B","end":106,"start":31,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":106,"start":31,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":400,"start":374,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":232,"start":135,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":855,"start":754,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":529,"start":434,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":669,"start":565,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":372,"start":297,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":126,"start":56,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":68,"start":12,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":106,"start":30,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":69},{"feature_index":1,"overlap_bases":67}],"query_bed":[859,928],"query_length":69,"union_overlap_bases":69},"family":"nested","fingerprint":"95894f08979569380e50fce153781b7dd3044e492511b7d50e9c66c2a919e294","group_id":"95894f08979569380e50fce153781b7dd3044e492511b7d50e9c66c2a919e294","id":"INTERVALS-0003366","index":3366,"input":{"contigs":{"synthetic_A":1759,"synthetic_B":1314},"features":[{"basis":"one_closed","contig":"synthetic_B","end":933,"start":855,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":927,"start":860,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":88,"start":14,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1070,"start":967,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":711,"start":600,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1141,"start":1066,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":623,"start":554,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":583,"start":567,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":928,"start":860,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":5},{"feature_index":1,"overlap_bases":3},{"feature_index":5,"overlap_bases":5}],"query_bed":[544,549],"query_length":5,"union_overlap_bases":5},"family":"nested","fingerprint":"8a8f6f744bab8509f801805b2f4feb304155677ad122e99e28d8eefbf39fb0a5","group_id":"8a8f6f744bab8509f801805b2f4feb304155677ad122e99e28d8eefbf39fb0a5","id":"INTERVALS-0003381","index":3381,"input":{"contigs":{"synthetic_A":776,"synthetic_B":1298},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":554,"start":539,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":548,"start":545,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":621,"start":588,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":146,"start":132,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":370,"start":331,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":618,"start":544,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":217,"start":141,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":549,"start":545,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[324,336],"query_length":12,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"19ac458e9bcb94c44651e9d2f23560d4fbdf2c15e78e02774127a0d175d0e419","group_id":"19ac458e9bcb94c44651e9d2f23560d4fbdf2c15e78e02774127a0d175d0e419","id":"INTERVALS-0003390","index":3390,"input":{"contigs":{"synthetic_A":1268,"synthetic_B":1680},"features":[{"basis":"one_closed","contig":"synthetic_B","end":324,"start":321,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":337,"start":336,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1189,"start":1176,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":313,"start":312,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1206,"start":1105,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1066,"start":1048,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":964,"start":923,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":507,"start":419,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":336,"start":324,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":68},{"feature_index":1,"overlap_bases":66}],"query_bed":[1175,1243],"query_length":68,"union_overlap_bases":68},"family":"nested","fingerprint":"215f7e182652491fba8be9e2767c2f46a65cbba3f34657edbfa345bb5fcb336e","group_id":"215f7e182652491fba8be9e2767c2f46a65cbba3f34657edbfa345bb5fcb336e","id":"INTERVALS-0003391","index":3391,"input":{"contigs":{"synthetic_A":1610,"synthetic_B":1452},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1248,"start":1171,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1242,"start":1177,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1565,"start":1478,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":656,"start":577,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":117,"start":73,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":813,"start":784,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1243,"start":1175,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":74},{"feature_index":9,"overlap_bases":3}],"query_bed":[796,870],"query_length":74,"union_overlap_bases":74},"family":"stranded","fingerprint":"90a851b470e9a8bcd24bd18313672be9c13d1d6e0260beda9567acc5f6177b52","group_id":"90a851b470e9a8bcd24bd18313672be9c13d1d6e0260beda9567acc5f6177b52","id":"INTERVALS-0003418","index":3418,"input":{"contigs":{"synthetic_A":1269,"synthetic_B":1370},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":870,"start":796,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":870,"start":797,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1243,"start":1147,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1146,"start":1050,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":500,"start":436,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":535,"start":445,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":759,"start":664,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":733,"start":706,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":858,"start":765,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":799,"start":736,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":114,"start":31,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1076,"start":1045,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":870,"start":797,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[341,351],"query_length":10,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"0e890994a60a635a234829cca684c61eefe8e14d8642b138e82d065e4428959e","group_id":"0e890994a60a635a234829cca684c61eefe8e14d8642b138e82d065e4428959e","id":"INTERVALS-0003420","index":3420,"input":{"contigs":{"synthetic_A":1085,"synthetic_B":809},"features":[{"basis":"one_closed","contig":"synthetic_A","end":341,"start":331,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":389,"start":351,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":293,"start":267,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":335,"start":231,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":456,"start":445,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":268,"start":236,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":714,"start":698,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":539,"start":520,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":319,"start":288,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":612,"start":582,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":351,"start":342,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":50},{"feature_index":1,"overlap_bases":48},{"feature_index":4,"overlap_bases":50},{"feature_index":7,"overlap_bases":39}],"query_bed":[823,873],"query_length":50,"union_overlap_bases":50},"family":"nested","fingerprint":"60fbaff68ed982fdc35995bf899551505d84c19cdd9dcbc9fe8d7f09f14e8f75","group_id":"60fbaff68ed982fdc35995bf899551505d84c19cdd9dcbc9fe8d7f09f14e8f75","id":"INTERVALS-0003426","index":3426,"input":{"contigs":{"synthetic_A":1111,"synthetic_B":1652},"features":[{"basis":"one_closed","contig":"synthetic_A","end":878,"start":819,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":872,"start":824,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1372,"start":1312,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1032,"start":1031,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":923,"start":803,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":455,"start":428,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":724,"start":638,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":918,"start":834,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":443,"start":360,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":873,"start":823,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":48},{"feature_index":2,"overlap_bases":2},{"feature_index":5,"overlap_bases":27}],"query_bed":[238,287],"query_length":49,"union_overlap_bases":49},"family":"overlapping_blocks","fingerprint":"d16cfda8f0124dbc5f68255171735e06f3a911aa68f02618fe67bc97bd285a15","group_id":"d16cfda8f0124dbc5f68255171735e06f3a911aa68f02618fe67bc97bd285a15","id":"INTERVALS-0003427","index":3427,"input":{"contigs":{"synthetic_A":1117,"synthetic_B":765},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":241,"start":235,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":287,"start":240,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":290,"start":286,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":130,"start":19,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":614,"start":570,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":265,"start":178,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":473,"start":407,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":287,"start":239,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":66},{"feature_index":2,"overlap_bases":2}],"query_bed":[1357,1424],"query_length":67,"union_overlap_bases":67},"family":"overlapping_blocks","fingerprint":"446cd84cf0b3d73e98f89a76198ae7e4a447af28eeacbad0119d4611dfec95a4","group_id":"446cd84cf0b3d73e98f89a76198ae7e4a447af28eeacbad0119d4611dfec95a4","id":"INTERVALS-0003432","index":3432,"input":{"contigs":{"synthetic_A":1559,"synthetic_B":1788},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1360,"start":1355,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1424,"start":1358,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1427,"start":1422,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1366,"start":1357,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":537,"start":450,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":606,"start":533,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":835,"start":823,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":819,"start":788,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":89,"start":64,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1252,"start":1135,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":338,"start":328,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":534,"start":485,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1424,"start":1358,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56},{"feature_index":1,"overlap_bases":54}],"query_bed":[426,482],"query_length":56,"union_overlap_bases":56},"family":"nested","fingerprint":"45e8b0063f0a627ecb675753ee517727b25eeaf70cff82b14cff991688d76145","group_id":"45e8b0063f0a627ecb675753ee517727b25eeaf70cff82b14cff991688d76145","id":"INTERVALS-0003441","index":3441,"input":{"contigs":{"synthetic_A":627,"synthetic_B":1297},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":487,"start":421,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":481,"start":427,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":536,"start":492,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":416,"start":374,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":520,"start":510,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1092,"start":1090,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":482,"start":426,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":27},{"feature_index":2,"overlap_bases":2}],"query_bed":[70,98],"query_length":28,"union_overlap_bases":28},"family":"overlapping_blocks","fingerprint":"3913d770ec34c8bcd0dcaeb802a6523df779817e241d9b2dcbff0f61402f7110","group_id":"3913d770ec34c8bcd0dcaeb802a6523df779817e241d9b2dcbff0f61402f7110","id":"INTERVALS-0003447","index":3447,"input":{"contigs":{"synthetic_A":1468,"synthetic_B":626},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":73,"start":67,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":98,"start":71,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":101,"start":97,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":626,"start":607,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":240,"start":192,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":768,"start":752,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":394,"start":378,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":98,"start":70,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[570,635],"query_length":65,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"8c293bd00c403f874ecb659645b0a8a465ff3d80603628838e78810eef4496f9","group_id":"8c293bd00c403f874ecb659645b0a8a465ff3d80603628838e78810eef4496f9","id":"INTERVALS-0003460","index":3460,"input":{"contigs":{"synthetic_A":1033,"synthetic_B":1247},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":570,"start":558,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":641,"start":636,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":328,"start":236,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":401,"start":359,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1038,"start":1010,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":866,"start":758,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":825,"start":753,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":171,"start":105,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":511,"start":452,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":875,"start":825,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1046,"start":1034,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1012,"start":954,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":635,"start":570,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":23},{"feature_index":1,"overlap_bases":21}],"query_bed":[55,78],"query_length":23,"union_overlap_bases":23},"family":"nested","fingerprint":"4d8cca2294e1c54b94902ee44d96741facb71692e06f304197c301b0ab056415","group_id":"4d8cca2294e1c54b94902ee44d96741facb71692e06f304197c301b0ab056415","id":"INTERVALS-0003461","index":3461,"input":{"contigs":{"synthetic_A":1287,"synthetic_B":1438},"features":[{"basis":"one_closed","contig":"synthetic_B","end":83,"start":51,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":77,"start":56,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1002,"start":992,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1267,"start":1181,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":818,"start":811,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":78,"start":55,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[424,477],"query_length":53,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"69da8e1c4021043b3348a169af220e72653a6f82fe11398e9f18a2e75312c395","group_id":"69da8e1c4021043b3348a169af220e72653a6f82fe11398e9f18a2e75312c395","id":"INTERVALS-0003475","index":3475,"input":{"contigs":{"synthetic_A":1634,"synthetic_B":1685},"features":[{"basis":"one_closed","contig":"synthetic_B","end":424,"start":411,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":491,"start":477,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":684,"start":617,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1463,"start":1364,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1258,"start":1247,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1272,"start":1168,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1150,"start":1057,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1100,"start":991,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1442,"start":1435,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":656,"start":608,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":306,"start":269,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":399,"start":339,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":477,"start":424,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[678,729],"query_length":51,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"76c5bd409a5aa94d8b18205ad0c9d55e9e3ce7982477f0d09a4dd789594d223a","group_id":"76c5bd409a5aa94d8b18205ad0c9d55e9e3ce7982477f0d09a4dd789594d223a","id":"INTERVALS-0003485","index":3485,"input":{"contigs":{"synthetic_A":1078,"synthetic_B":1448},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":678,"start":674,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":735,"start":730,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":481,"start":374,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":192,"start":182,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1152,"start":1125,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":892,"start":786,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":510,"start":482,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":308,"start":298,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":729,"start":679,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":21}],"query_bed":[218,239],"query_length":21,"union_overlap_bases":21},"family":"stranded","fingerprint":"8fb8952a70e3cf097e3e40b02ed3bc929bcc2a96294bd1a85ea7ac50df5ab675","group_id":"8fb8952a70e3cf097e3e40b02ed3bc929bcc2a96294bd1a85ea7ac50df5ab675","id":"INTERVALS-0003488","index":3488,"input":{"contigs":{"synthetic_A":1253,"synthetic_B":1209},"features":[{"basis":"one_closed","contig":"synthetic_A","end":239,"start":219,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":239,"start":218,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":210,"start":206,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":733,"start":621,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":765,"start":685,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":205,"start":138,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1227,"start":1112,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":943,"start":888,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1058,"start":952,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1081,"start":1010,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":239,"start":218,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[87,126],"query_length":39,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"db93c906435d3c0f00ab45b57df6b80ba199042b42a9be93c6051f5fa5ab5044","group_id":"db93c906435d3c0f00ab45b57df6b80ba199042b42a9be93c6051f5fa5ab5044","id":"INTERVALS-0003505","index":3505,"input":{"contigs":{"synthetic_A":787,"synthetic_B":1071},"features":[{"basis":"one_closed","contig":"synthetic_A","end":87,"start":76,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":128,"start":127,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":477,"start":383,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":595,"start":494,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":66,"start":60,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":126,"start":87,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":38}],"query_bed":[781,819],"query_length":38,"union_overlap_bases":38},"family":"stranded","fingerprint":"8b80815cb3c829f233df3dfebc1b4e3402d98a63d9e7e96eef37df1aa54faafa","group_id":"8b80815cb3c829f233df3dfebc1b4e3402d98a63d9e7e96eef37df1aa54faafa","id":"INTERVALS-0003508","index":3508,"input":{"contigs":{"synthetic_A":1746,"synthetic_B":1415},"features":[{"basis":"one_closed","contig":"synthetic_B","end":819,"start":782,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":819,"start":781,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1231,"start":1168,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":210,"start":108,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1191,"start":1135,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1556,"start":1480,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1082,"start":1068,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":880,"start":866,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":783,"start":690,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":528,"start":473,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1150,"start":1138,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":819,"start":781,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":7}],"query_bed":[1080,1087],"query_length":7,"union_overlap_bases":7},"family":"coordinate_conversion","fingerprint":"e3e68b5c1db9ca1e00a52d571692bc34beaf0a1afdb6619416fd5d4cfbf8a897","group_id":"e3e68b5c1db9ca1e00a52d571692bc34beaf0a1afdb6619416fd5d4cfbf8a897","id":"INTERVALS-0003509","index":3509,"input":{"contigs":{"synthetic_A":1588,"synthetic_B":1439},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1087,"start":1081,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1213,"start":1136,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":985,"start":962,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1357,"start":1310,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1093,"start":1020,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":662,"start":605,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":652,"start":577,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1087,"start":1081,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":31},{"feature_index":1,"overlap_bases":29}],"query_bed":[24,55],"query_length":31,"union_overlap_bases":31},"family":"nested","fingerprint":"9ddda618ad83a36f19c5b859db74ac1ad258b37f072b9f841f5607ea7785b63a","group_id":"9ddda618ad83a36f19c5b859db74ac1ad258b37f072b9f841f5607ea7785b63a","id":"INTERVALS-0003511","index":3511,"input":{"contigs":{"synthetic_A":649,"synthetic_B":1695},"features":[{"basis":"one_closed","contig":"synthetic_A","end":60,"start":20,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":54,"start":25,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":240,"start":193,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":275,"start":160,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1130,"start":1026,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":291,"start":211,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":55,"start":24,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[690,710],"query_length":20,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e76ee062bda37426b3c9a2c62c79840c315b131b4b22d3fa3d854924d45ed9cf","group_id":"e76ee062bda37426b3c9a2c62c79840c315b131b4b22d3fa3d854924d45ed9cf","id":"INTERVALS-0003545","index":3545,"input":{"contigs":{"synthetic_A":1374,"synthetic_B":1207},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":690,"start":689,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":747,"start":710,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":301,"start":216,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":971,"start":970,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":126,"start":99,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":324,"start":312,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":193,"start":97,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":710,"start":691,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":16},{"feature_index":2,"overlap_bases":2}],"query_bed":[552,569],"query_length":17,"union_overlap_bases":17},"family":"overlapping_blocks","fingerprint":"be08ceea6fba8ef17c5b7ee69b53a96f4e61480171d9d02042f3fcc55c20485c","group_id":"be08ceea6fba8ef17c5b7ee69b53a96f4e61480171d9d02042f3fcc55c20485c","id":"INTERVALS-0003552","index":3552,"input":{"contigs":{"synthetic_A":817,"synthetic_B":1024},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":555,"start":549,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":569,"start":554,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":572,"start":567,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":515,"start":485,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":178,"start":89,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":338,"start":299,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":312,"start":311,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":900,"start":863,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":316,"start":297,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":302,"start":265,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":628,"start":515,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":569,"start":553,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":56}],"query_bed":[783,839],"query_length":56,"union_overlap_bases":56},"family":"stranded","fingerprint":"4aa163f42074a40eb1d96fe6eb5dc5cb3de5dfbe0104e6e33477efd98066c7fd","group_id":"4aa163f42074a40eb1d96fe6eb5dc5cb3de5dfbe0104e6e33477efd98066c7fd","id":"INTERVALS-0003553","index":3553,"input":{"contigs":{"synthetic_A":1756,"synthetic_B":1637},"features":[{"basis":"one_closed","contig":"synthetic_B","end":839,"start":784,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":839,"start":784,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1298,"start":1265,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":630,"start":598,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":236,"start":191,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":839,"start":784,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":34}],"query_bed":[842,876],"query_length":34,"union_overlap_bases":34},"family":"coordinate_conversion","fingerprint":"3ad93cf8e8f2461cf453944a29659fbfcca14d36c04579f24bffb143cb9cdde8","group_id":"3ad93cf8e8f2461cf453944a29659fbfcca14d36c04579f24bffb143cb9cdde8","id":"INTERVALS-0003564","index":3564,"input":{"contigs":{"synthetic_A":1324,"synthetic_B":623},"features":[{"basis":"one_closed","contig":"synthetic_A","end":876,"start":843,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":369,"start":320,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":888,"start":879,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":604,"start":551,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1234,"start":1140,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":493,"start":456,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":593,"start":516,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":302,"start":268,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":126,"start":46,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":23,"start":16,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":876,"start":843,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32},{"feature_index":1,"overlap_bases":30}],"query_bed":[1003,1035],"query_length":32,"union_overlap_bases":32},"family":"nested","fingerprint":"cfb39ce251f63576a8dc674a947b8b0c2eec1819ad013b2d45aa5909892ef35d","group_id":"cfb39ce251f63576a8dc674a947b8b0c2eec1819ad013b2d45aa5909892ef35d","id":"INTERVALS-0003571","index":3571,"input":{"contigs":{"synthetic_A":1226,"synthetic_B":733},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1040,"start":998,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1034,"start":1005,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":244,"start":131,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":194,"start":148,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":640,"start":609,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1035,"start":1004,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":36},{"feature_index":1,"overlap_bases":34}],"query_bed":[83,119],"query_length":36,"union_overlap_bases":36},"family":"nested","fingerprint":"90e9570454cbbb1f32311c075710f602f279411b325dc4a258235523c90e08dc","group_id":"90e9570454cbbb1f32311c075710f602f279411b325dc4a258235523c90e08dc","id":"INTERVALS-0003576","index":3576,"input":{"contigs":{"synthetic_A":1279,"synthetic_B":619},"features":[{"basis":"one_closed","contig":"synthetic_A","end":124,"start":79,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":118,"start":85,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":116,"start":102,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":440,"start":322,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":533,"start":509,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":91,"start":39,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":88,"start":47,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":476,"start":403,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":528,"start":408,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":119,"start":83,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":10,"overlap_bases":34}],"query_bed":[118,152],"query_length":34,"union_overlap_bases":34},"family":"touching_boundary","fingerprint":"f39287048a5bce4979ab9afcb3e1e24e8e544ecade37bc18534ebd828ddb56ac","group_id":"f39287048a5bce4979ab9afcb3e1e24e8e544ecade37bc18534ebd828ddb56ac","id":"INTERVALS-0003580","index":3580,"input":{"contigs":{"synthetic_A":705,"synthetic_B":1475},"features":[{"basis":"one_closed","contig":"synthetic_B","end":118,"start":112,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":162,"start":153,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":203,"start":162,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":282,"start":220,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":279,"start":163,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":117,"start":19,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":189,"start":103,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":475,"start":447,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":579,"start":541,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":221,"start":102,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":152,"start":94,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":442,"start":379,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":152,"start":118,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":74},{"feature_index":2,"overlap_bases":2}],"query_bed":[1042,1117],"query_length":75,"union_overlap_bases":75},"family":"overlapping_blocks","fingerprint":"46e2c3200e82a758d1d5318619b62b4f7e7d717ff4929f805460805bf5a6a8c4","group_id":"46e2c3200e82a758d1d5318619b62b4f7e7d717ff4929f805460805bf5a6a8c4","id":"INTERVALS-0003582","index":3582,"input":{"contigs":{"synthetic_A":1631,"synthetic_B":1429},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1045,"start":1040,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1117,"start":1044,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1120,"start":1115,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":128,"start":104,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":257,"start":213,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":161,"start":130,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":262,"start":180,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":46,"start":36,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":650,"start":613,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1031,"start":927,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1117,"start":1043,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":7},{"feature_index":1,"overlap_bases":5}],"query_bed":[609,616],"query_length":7,"union_overlap_bases":7},"family":"nested","fingerprint":"244e5bb2dfe74314c0c085b22fb8c4b780d1c02471814d477f6fb25ff609ffd7","group_id":"244e5bb2dfe74314c0c085b22fb8c4b780d1c02471814d477f6fb25ff609ffd7","id":"INTERVALS-0003586","index":3586,"input":{"contigs":{"synthetic_A":624,"synthetic_B":941},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":621,"start":604,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":615,"start":611,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":214,"start":165,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":267,"start":212,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":865,"start":765,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":520,"start":430,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":412,"start":335,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":141,"start":93,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":359,"start":263,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":321,"start":249,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":320,"start":265,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":806,"start":766,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":616,"start":610,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":20}],"query_bed":[758,778],"query_length":20,"union_overlap_bases":20},"family":"coordinate_conversion","fingerprint":"ec3f1ae4ecdb1a819bdc97b4370aafbe1001c1be56c3ee467fc37d597c0c09e3","group_id":"ec3f1ae4ecdb1a819bdc97b4370aafbe1001c1be56c3ee467fc37d597c0c09e3","id":"INTERVALS-0003624","index":3624,"input":{"contigs":{"synthetic_A":1757,"synthetic_B":1282},"features":[{"basis":"one_closed","contig":"synthetic_A","end":778,"start":759,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":908,"start":849,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":410,"start":409,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1211,"start":1141,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":215,"start":116,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":883,"start":858,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":191,"start":190,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":137,"start":128,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":339,"start":289,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":229,"start":133,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":308,"start":308,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":778,"start":759,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":43},{"feature_index":4,"overlap_bases":40}],"query_bed":[360,403],"query_length":43,"union_overlap_bases":43},"family":"stranded","fingerprint":"718c765c7c52feb1c5add67a9ec6fdc75512b72957fc0ec43aac4b266749afe2","group_id":"718c765c7c52feb1c5add67a9ec6fdc75512b72957fc0ec43aac4b266749afe2","id":"INTERVALS-0003628","index":3628,"input":{"contigs":{"synthetic_A":1227,"synthetic_B":912},"features":[{"basis":"one_closed","contig":"synthetic_B","end":403,"start":361,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":403,"start":361,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":830,"start":827,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":630,"start":594,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":400,"start":316,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":144,"start":74,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":457,"start":348,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":403,"start":360,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":54}],"query_bed":[607,661],"query_length":54,"union_overlap_bases":54},"family":"coordinate_conversion","fingerprint":"d45d1d0477f22385557063551942417fcf9238d6751b4523482d733784eec9d4","group_id":"d45d1d0477f22385557063551942417fcf9238d6751b4523482d733784eec9d4","id":"INTERVALS-0003629","index":3629,"input":{"contigs":{"synthetic_A":1134,"synthetic_B":1225},"features":[{"basis":"one_closed","contig":"synthetic_A","end":661,"start":608,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":293,"start":227,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":928,"start":831,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1124,"start":1037,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":253,"start":184,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":661,"start":608,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":66}],"query_bed":[766,832],"query_length":66,"union_overlap_bases":66},"family":"stranded","fingerprint":"90492b8a3ee9e9e81618c363a4dddb15dac819ee8976f05c760f8981abba0ab8","group_id":"90492b8a3ee9e9e81618c363a4dddb15dac819ee8976f05c760f8981abba0ab8","id":"INTERVALS-0003648","index":3648,"input":{"contigs":{"synthetic_A":1529,"synthetic_B":805},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":832,"start":766,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":832,"start":767,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":421,"start":380,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":454,"start":366,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":323,"start":267,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":308,"start":196,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":554,"start":439,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":832,"start":766,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1247,1309],"query_length":62,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"9bac0cc21964eb789216d6765556547a0c3377d03f2e2b0e0cb88386ec0bdd7d","group_id":"9bac0cc21964eb789216d6765556547a0c3377d03f2e2b0e0cb88386ec0bdd7d","id":"INTERVALS-0003650","index":3650,"input":{"contigs":{"synthetic_A":1579,"synthetic_B":765},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1247,"start":1242,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1317,"start":1310,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1236,"start":1158,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":734,"start":630,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":724,"start":638,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":727,"start":612,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":141,"start":35,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1498,"start":1402,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":514,"start":416,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":82,"start":42,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1309,"start":1248,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":58},{"feature_index":1,"overlap_bases":56}],"query_bed":[436,494],"query_length":58,"union_overlap_bases":58},"family":"nested","fingerprint":"32529494feefaa6a51a1dc22380d70d8b32bce2f17d9c48a4ba0523acd95a952","group_id":"32529494feefaa6a51a1dc22380d70d8b32bce2f17d9c48a4ba0523acd95a952","id":"INTERVALS-0003651","index":3651,"input":{"contigs":{"synthetic_A":655,"synthetic_B":710},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":499,"start":431,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":493,"start":437,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":626,"start":572,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":89,"start":84,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":310,"start":257,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":657,"start":542,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":364,"start":266,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":579,"start":507,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":368,"start":276,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":494,"start":437,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":10}],"query_bed":[456,466],"query_length":10,"union_overlap_bases":10},"family":"stranded","fingerprint":"77969488f6b9b942c10a50deb3368417ea14057501e39616a026b0e0030f1631","group_id":"77969488f6b9b942c10a50deb3368417ea14057501e39616a026b0e0030f1631","id":"INTERVALS-0003653","index":3653,"input":{"contigs":{"synthetic_A":1759,"synthetic_B":635},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":466,"start":456,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":466,"start":457,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1098,"start":980,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":760,"start":686,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":160,"start":60,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1290,"start":1262,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":272,"start":251,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":405,"start":338,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":310,"start":259,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":424,"start":352,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":367,"start":364,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":329,"start":326,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":466,"start":456,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":24},{"feature_index":4,"overlap_bases":24}],"query_bed":[1420,1444],"query_length":24,"union_overlap_bases":24},"family":"stranded","fingerprint":"3825961ec0b667954567e5c02d41f1fbe6ca86176b0d15c93e31ffbb56dea1e3","group_id":"3825961ec0b667954567e5c02d41f1fbe6ca86176b0d15c93e31ffbb56dea1e3","id":"INTERVALS-0003673","index":3673,"input":{"contigs":{"synthetic_A":1362,"synthetic_B":1695},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1444,"start":1420,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1444,"start":1420,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1139,"start":1071,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1540,"start":1490,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1462,"start":1388,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":809,"start":801,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":169,"start":161,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":204,"start":118,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1362,"start":1252,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1444,"start":1421,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":77},{"feature_index":7,"overlap_bases":10}],"query_bed":[610,687],"query_length":77,"union_overlap_bases":77},"family":"stranded","fingerprint":"75586e806131b96ee7ab16217907b4da98a13fc8d081fce3298aff73978810ef","group_id":"75586e806131b96ee7ab16217907b4da98a13fc8d081fce3298aff73978810ef","id":"INTERVALS-0003693","index":3693,"input":{"contigs":{"synthetic_A":1748,"synthetic_B":1001},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":687,"start":610,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":687,"start":611,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1236,"start":1154,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1533,"start":1453,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":873,"start":784,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":735,"start":631,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":161,"start":56,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":772,"start":678,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":728,"start":640,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":191,"start":146,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":217,"start":97,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":816,"start":734,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":687,"start":610,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[900,969],"query_length":69,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"0099dff26530ce7edce0446cb705503c37bdfb60f69f22ac4952132082b3a7ec","group_id":"0099dff26530ce7edce0446cb705503c37bdfb60f69f22ac4952132082b3a7ec","id":"INTERVALS-0003695","index":3695,"input":{"contigs":{"synthetic_A":795,"synthetic_B":1165},"features":[{"basis":"one_closed","contig":"synthetic_B","end":900,"start":893,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":995,"start":969,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":630,"start":621,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":607,"start":529,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":84,"start":1,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":969,"start":900,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[557,605],"query_length":48,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"fbfe15166ce74fa4c485efcdb2aa0ae0fd7b19681bbd4c19b4676df0f4c1fa4a","group_id":"fbfe15166ce74fa4c485efcdb2aa0ae0fd7b19681bbd4c19b4676df0f4c1fa4a","id":"INTERVALS-0003715","index":3715,"input":{"contigs":{"synthetic_A":1381,"synthetic_B":767},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":557,"start":553,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":639,"start":606,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":117,"start":72,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":660,"start":588,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":872,"start":781,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":524,"start":470,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":833,"start":783,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":205,"start":126,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":605,"start":557,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":12}],"query_bed":[314,326],"query_length":12,"union_overlap_bases":12},"family":"stranded","fingerprint":"04978f280950c064af5ab211538239fe6de82a4b1cfe7e31e45743b459c828df","group_id":"04978f280950c064af5ab211538239fe6de82a4b1cfe7e31e45743b459c828df","id":"INTERVALS-0003718","index":3718,"input":{"contigs":{"synthetic_A":1489,"synthetic_B":708},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":326,"start":314,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":326,"start":315,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1278,"start":1179,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":278,"start":261,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":670,"start":577,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1031,"start":932,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":196,"start":98,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1142,"start":1105,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":409,"start":385,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":323,"start":281,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":886,"start":846,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":246,"start":139,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":326,"start":314,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":7}],"query_bed":[180,187],"query_length":7,"union_overlap_bases":7},"family":"coordinate_conversion","fingerprint":"0425616eada913adfaa8912fb17f79b7bccda9bbe58cd65c89da3398e85ea8ca","group_id":"0425616eada913adfaa8912fb17f79b7bccda9bbe58cd65c89da3398e85ea8ca","id":"INTERVALS-0003719","index":3719,"input":{"contigs":{"synthetic_A":1374,"synthetic_B":1206},"features":[{"basis":"one_closed","contig":"synthetic_B","end":187,"start":181,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":829,"start":814,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":145,"start":83,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":96,"start":10,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":514,"start":451,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":925,"start":921,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":832,"start":808,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":717,"start":708,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":187,"start":181,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":80}],"query_bed":[406,486],"query_length":80,"union_overlap_bases":80},"family":"stranded","fingerprint":"e56809ba61487256b0fb4510b4b27989e0b9d1566bbefc25ae3ca4bfcb5ca2b2","group_id":"e56809ba61487256b0fb4510b4b27989e0b9d1566bbefc25ae3ca4bfcb5ca2b2","id":"INTERVALS-0003723","index":3723,"input":{"contigs":{"synthetic_A":945,"synthetic_B":1670},"features":[{"basis":"one_closed","contig":"synthetic_A","end":486,"start":407,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":486,"start":407,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1201,"start":1126,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":939,"start":820,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1116,"start":1104,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":737,"start":701,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1452,"start":1342,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":790,"start":676,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":718,"start":599,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1215,"start":1132,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":87,"start":5,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1105,"start":1044,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":486,"start":406,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[337,358],"query_length":21,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"32794f12991ad6c56943cd0c6cd67e0309e609ec5fb0d884033b3899e3ce4399","group_id":"32794f12991ad6c56943cd0c6cd67e0309e609ec5fb0d884033b3899e3ce4399","id":"INTERVALS-0003740","index":3740,"input":{"contigs":{"synthetic_A":1288,"synthetic_B":923},"features":[{"basis":"one_closed","contig":"synthetic_A","end":337,"start":325,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":370,"start":359,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":804,"start":689,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":504,"start":405,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":269,"start":169,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1207,"start":1111,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":633,"start":581,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":358,"start":338,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":78},{"feature_index":3,"overlap_bases":67},{"feature_index":10,"overlap_bases":9}],"query_bed":[1513,1591],"query_length":78,"union_overlap_bases":78},"family":"coordinate_conversion","fingerprint":"f15e1fd48020ac992ef23b29055b7addf308f528b0eed2acfeca0cee8e9bd365","group_id":"f15e1fd48020ac992ef23b29055b7addf308f528b0eed2acfeca0cee8e9bd365","id":"INTERVALS-0003749","index":3749,"input":{"contigs":{"synthetic_A":1731,"synthetic_B":637},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1591,"start":1514,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":278,"start":251,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":415,"start":404,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1580,"start":1464,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":560,"start":454,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":742,"start":692,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":316,"start":262,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":217,"start":130,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":73,"start":65,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1470,"start":1376,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1558,"start":1550,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":427,"start":384,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1591,"start":1514,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":51}],"query_bed":[290,341],"query_length":51,"union_overlap_bases":51},"family":"coordinate_conversion","fingerprint":"b58b63a4d9f8226a578d4fff09e1060ef6b220a7efb5ab3ca884d0d03ee6af60","group_id":"b58b63a4d9f8226a578d4fff09e1060ef6b220a7efb5ab3ca884d0d03ee6af60","id":"INTERVALS-0003754","index":3754,"input":{"contigs":{"synthetic_A":1055,"synthetic_B":743},"features":[{"basis":"one_closed","contig":"synthetic_A","end":341,"start":291,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":899,"start":877,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":520,"start":461,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":275,"start":247,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":401,"start":346,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":341,"start":291,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":20},{"feature_index":2,"overlap_bases":2}],"query_bed":[21,42],"query_length":21,"union_overlap_bases":21},"family":"overlapping_blocks","fingerprint":"1f4ee4d80601f139b03d34fbbaa6a51a5ec95206016220f53a0abf2e74224810","group_id":"1f4ee4d80601f139b03d34fbbaa6a51a5ec95206016220f53a0abf2e74224810","id":"INTERVALS-0003762","index":3762,"input":{"contigs":{"synthetic_A":1107,"synthetic_B":1641},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":24,"start":18,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":42,"start":22,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":45,"start":41,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1093,"start":1071,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":489,"start":478,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":948,"start":936,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":631,"start":516,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":42,"start":21,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":5},{"feature_index":2,"overlap_bases":2}],"query_bed":[545,551],"query_length":6,"union_overlap_bases":6},"family":"overlapping_blocks","fingerprint":"c79f0d9842cb6135ca94970d661fa18c69f82726f4f1a5e4a3fd9f59c05fe60a","group_id":"c79f0d9842cb6135ca94970d661fa18c69f82726f4f1a5e4a3fd9f59c05fe60a","id":"INTERVALS-0003787","index":3787,"input":{"contigs":{"synthetic_A":1150,"synthetic_B":763},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":548,"start":542,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":551,"start":547,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":554,"start":550,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":785,"start":765,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":578,"start":476,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":442,"start":405,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":249,"start":245,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":154,"start":109,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":540,"start":521,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":133,"start":97,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":719,"start":667,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":610,"start":581,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":551,"start":545,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56},{"feature_index":7,"overlap_bases":1}],"query_bed":[90,146],"query_length":56,"union_overlap_bases":56},"family":"coordinate_conversion","fingerprint":"bacd3a72d93b03f5475bb795b66102039148a8b53f5b11e5a96b20bb44a7c3cc","group_id":"bacd3a72d93b03f5475bb795b66102039148a8b53f5b11e5a96b20bb44a7c3cc","id":"INTERVALS-0003789","index":3789,"input":{"contigs":{"synthetic_A":1206,"synthetic_B":1214},"features":[{"basis":"one_closed","contig":"synthetic_B","end":146,"start":91,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":493,"start":393,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":786,"start":678,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":234,"start":150,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":778,"start":678,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":886,"start":803,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":105,"start":82,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":249,"start":146,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":146,"start":91,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":15}],"query_bed":[30,45],"query_length":15,"union_overlap_bases":15},"family":"coordinate_conversion","fingerprint":"cfab9d4401d8a0697cca6b4009800ff54dfe7425cead3c0afd303220f3b2b9cf","group_id":"cfab9d4401d8a0697cca6b4009800ff54dfe7425cead3c0afd303220f3b2b9cf","id":"INTERVALS-0003799","index":3799,"input":{"contigs":{"synthetic_A":1609,"synthetic_B":1757},"features":[{"basis":"one_closed","contig":"synthetic_A","end":45,"start":31,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1202,"start":1111,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1148,"start":1044,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":120,"start":41,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1394,"start":1343,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1601,"start":1486,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":384,"start":373,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1140,"start":1135,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1474,"start":1381,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":779,"start":759,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":737,"start":672,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":45,"start":31,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":58},{"feature_index":8,"overlap_bases":4}],"query_bed":[531,589],"query_length":58,"union_overlap_bases":58},"family":"coordinate_conversion","fingerprint":"e4795cacb8a3dcef26cf3026d23c5718a4d7de911d75a59af19021ef1e1d783a","group_id":"e4795cacb8a3dcef26cf3026d23c5718a4d7de911d75a59af19021ef1e1d783a","id":"INTERVALS-0003839","index":3839,"input":{"contigs":{"synthetic_A":1017,"synthetic_B":787},"features":[{"basis":"one_closed","contig":"synthetic_B","end":589,"start":532,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":162,"start":72,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":492,"start":481,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":515,"start":417,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":172,"start":171,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":457,"start":373,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":2,"start":1,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":58,"start":36,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":535,"start":497,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":589,"start":532,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[595,671],"query_length":76,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"96a7f4343e684b9f57debd16eb9d1bd25783d1b2518ff6bd15015c83c687a41b","group_id":"96a7f4343e684b9f57debd16eb9d1bd25783d1b2518ff6bd15015c83c687a41b","id":"INTERVALS-0003845","index":3845,"input":{"contigs":{"synthetic_A":849,"synthetic_B":814},"features":[{"basis":"one_closed","contig":"synthetic_B","end":595,"start":585,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":678,"start":671,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":369,"start":354,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":782,"start":683,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":686,"start":650,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":490,"start":415,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":671,"start":596,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[243,285],"query_length":42,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"4538b1425bb0042a39143599314ccd8cd54098deb8826132b4f99e12c057e589","group_id":"4538b1425bb0042a39143599314ccd8cd54098deb8826132b4f99e12c057e589","id":"INTERVALS-0003850","index":3850,"input":{"contigs":{"synthetic_A":1656,"synthetic_B":1664},"features":[{"basis":"one_closed","contig":"synthetic_A","end":243,"start":241,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":321,"start":285,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":902,"start":822,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":398,"start":363,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1332,"start":1322,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1490,"start":1410,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":285,"start":243,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":12},{"feature_index":2,"overlap_bases":2}],"query_bed":[787,800],"query_length":13,"union_overlap_bases":13},"family":"overlapping_blocks","fingerprint":"2206903671dd360c548c3257d0b23e18ed6f4a8857976aacb9742babd3e02744","group_id":"2206903671dd360c548c3257d0b23e18ed6f4a8857976aacb9742babd3e02744","id":"INTERVALS-0003852","index":3852,"input":{"contigs":{"synthetic_A":1482,"synthetic_B":1554},"features":[{"basis":"one_closed","contig":"synthetic_A","end":790,"start":785,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":800,"start":789,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":803,"start":798,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1061,"start":1002,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":995,"start":985,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1512,"start":1410,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":803,"start":739,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":652,"start":551,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":800,"start":787,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":5,"overlap_bases":6},{"feature_index":7,"overlap_bases":34}],"query_bed":[1152,1224],"query_length":72,"union_overlap_bases":34},"family":"touching_boundary","fingerprint":"e29b35d61bb273acedac1e358571ef6e891a79cdfd768b28d7c537881d6a20b4","group_id":"e29b35d61bb273acedac1e358571ef6e891a79cdfd768b28d7c537881d6a20b4","id":"INTERVALS-0003870","index":3870,"input":{"contigs":{"synthetic_A":1586,"synthetic_B":1287},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1152,"start":1149,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1263,"start":1224,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":759,"start":670,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":900,"start":856,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1338,"start":1321,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1158,"start":1100,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":529,"start":445,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1186,"start":1140,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1224,"start":1152,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":70}],"query_bed":[594,664],"query_length":70,"union_overlap_bases":70},"family":"stranded","fingerprint":"55f930b0df391170bbdb3ced6bed187603207e3536ac86743f0fc806a6cb76d2","group_id":"55f930b0df391170bbdb3ced6bed187603207e3536ac86743f0fc806a6cb76d2","id":"INTERVALS-0003873","index":3873,"input":{"contigs":{"synthetic_A":1668,"synthetic_B":675},"features":[{"basis":"one_closed","contig":"synthetic_A","end":664,"start":595,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":664,"start":594,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":428,"start":348,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1217,"start":1149,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":443,"start":341,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":439,"start":436,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":385,"start":274,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":145,"start":128,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":207,"start":158,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":252,"start":190,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":664,"start":594,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":60},{"feature_index":1,"overlap_bases":58},{"feature_index":10,"overlap_bases":2}],"query_bed":[396,456],"query_length":60,"union_overlap_bases":60},"family":"nested","fingerprint":"2e6b949813240502eddd92427b526db3d21c71ae631aa13925300fcafe2aef36","group_id":"2e6b949813240502eddd92427b526db3d21c71ae631aa13925300fcafe2aef36","id":"INTERVALS-0003901","index":3901,"input":{"contigs":{"synthetic_A":733,"synthetic_B":1597},"features":[{"basis":"one_closed","contig":"synthetic_A","end":461,"start":392,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":455,"start":397,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":185,"start":107,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1415,"start":1347,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":326,"start":325,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":360,"start":297,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":478,"start":385,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1344,"start":1243,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":507,"start":415,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1201,"start":1112,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":469,"start":455,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":456,"start":396,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":28}],"query_bed":[647,675],"query_length":28,"union_overlap_bases":28},"family":"coordinate_conversion","fingerprint":"45298f640140ad219b0f0c507f09589f0ec482df9644af5c32ab47640e87c132","group_id":"45298f640140ad219b0f0c507f09589f0ec482df9644af5c32ab47640e87c132","id":"INTERVALS-0003909","index":3909,"input":{"contigs":{"synthetic_A":847,"synthetic_B":823},"features":[{"basis":"one_closed","contig":"synthetic_A","end":675,"start":648,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":506,"start":404,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":232,"start":232,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":483,"start":445,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":746,"start":663,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":152,"start":83,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":69,"start":63,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":434,"start":323,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":675,"start":648,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":51},{"feature_index":2,"overlap_bases":2}],"query_bed":[111,163],"query_length":52,"union_overlap_bases":52},"family":"overlapping_blocks","fingerprint":"03bbe8ce44ed2d74af2143ac23ed07a4e1c490cc0343be5e4c0e57da926adfe9","group_id":"03bbe8ce44ed2d74af2143ac23ed07a4e1c490cc0343be5e4c0e57da926adfe9","id":"INTERVALS-0003917","index":3917,"input":{"contigs":{"synthetic_A":1247,"synthetic_B":1158},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":114,"start":108,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":163,"start":112,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":166,"start":161,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":882,"start":835,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1054,"start":954,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":167,"start":97,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":881,"start":837,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":163,"start":112,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":56},{"feature_index":2,"overlap_bases":2}],"query_bed":[959,1016],"query_length":57,"union_overlap_bases":57},"family":"overlapping_blocks","fingerprint":"cae6b5f055020b946c56e0904faa28de667d2feea94b72968252e8c6924a2c1a","group_id":"cae6b5f055020b946c56e0904faa28de667d2feea94b72968252e8c6924a2c1a","id":"INTERVALS-0003927","index":3927,"input":{"contigs":{"synthetic_A":1531,"synthetic_B":1592},"features":[{"basis":"one_closed","contig":"synthetic_A","end":962,"start":957,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1016,"start":960,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1019,"start":1015,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1400,"start":1324,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":387,"start":343,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1416,"start":1365,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":120,"start":64,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1016,"start":960,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":70},{"feature_index":1,"overlap_bases":68}],"query_bed":[139,209],"query_length":70,"union_overlap_bases":70},"family":"nested","fingerprint":"ca6167069013a0d6635d4365104ab47e2277d7bfc8af08094b060a8bbdedb158","group_id":"ca6167069013a0d6635d4365104ab47e2277d7bfc8af08094b060a8bbdedb158","id":"INTERVALS-0003941","index":3941,"input":{"contigs":{"synthetic_A":729,"synthetic_B":820},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":214,"start":134,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":208,"start":140,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":315,"start":298,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":121,"start":56,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":433,"start":365,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":209,"start":139,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":54},{"feature_index":2,"overlap_bases":2},{"feature_index":4,"overlap_bases":29}],"query_bed":[289,344],"query_length":55,"union_overlap_bases":55},"family":"overlapping_blocks","fingerprint":"74e577544fb8932a525c2c3b4cb064bd03b14fd4ab9b516df62f428572fd832a","group_id":"74e577544fb8932a525c2c3b4cb064bd03b14fd4ab9b516df62f428572fd832a","id":"INTERVALS-0003962","index":3962,"input":{"contigs":{"synthetic_A":819,"synthetic_B":742},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":292,"start":286,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":344,"start":290,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":347,"start":343,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":425,"start":358,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":318,"start":239,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":507,"start":479,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":174,"start":100,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":344,"start":290,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":5}],"query_bed":[283,288],"query_length":5,"union_overlap_bases":5},"family":"coordinate_conversion","fingerprint":"23f6307c469167cee278101fe3a45cccd93e9fa1028b659affb51faf12b9e4cd","group_id":"23f6307c469167cee278101fe3a45cccd93e9fa1028b659affb51faf12b9e4cd","id":"INTERVALS-0003964","index":3964,"input":{"contigs":{"synthetic_A":1465,"synthetic_B":1728},"features":[{"basis":"one_closed","contig":"synthetic_B","end":288,"start":284,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1443,"start":1336,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":200,"start":128,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":990,"start":954,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":460,"start":447,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":237,"start":178,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":562,"start":466,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":288,"start":284,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[108,162],"query_length":54,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"7af86f52d21afc22b756d25be665e9921922d99b5bea3273f8436e825da41ac8","group_id":"7af86f52d21afc22b756d25be665e9921922d99b5bea3273f8436e825da41ac8","id":"INTERVALS-0003965","index":3965,"input":{"contigs":{"synthetic_A":1283,"synthetic_B":739},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":108,"start":103,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":167,"start":163,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1068,"start":1064,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":821,"start":729,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":347,"start":278,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":253,"start":220,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":162,"start":108,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":37},{"feature_index":2,"overlap_bases":2},{"feature_index":6,"overlap_bases":14}],"query_bed":[124,162],"query_length":38,"union_overlap_bases":38},"family":"overlapping_blocks","fingerprint":"9bec3c7039a43024cbf92ac3f5db975f69eb6a25866c4afa5bf95d973db47143","group_id":"9bec3c7039a43024cbf92ac3f5db975f69eb6a25866c4afa5bf95d973db47143","id":"INTERVALS-0003972","index":3972,"input":{"contigs":{"synthetic_A":619,"synthetic_B":1091},"features":[{"basis":"one_closed","contig":"synthetic_B","end":127,"start":122,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":162,"start":125,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":165,"start":160,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":89,"start":18,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":385,"start":304,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":419,"start":400,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":165,"start":149,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":641,"start":615,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":969,"start":878,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":313,"start":288,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":162,"start":125,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[694,708],"query_length":14,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"196a4f3079d042518b1348cecbf57c6f70709db820e23e220368d43ffe1f41c2","group_id":"196a4f3079d042518b1348cecbf57c6f70709db820e23e220368d43ffe1f41c2","id":"INTERVALS-0003990","index":3990,"input":{"contigs":{"synthetic_A":1119,"synthetic_B":1069},"features":[{"basis":"one_closed","contig":"synthetic_B","end":694,"start":680,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":726,"start":709,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":152,"start":90,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":995,"start":965,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":161,"start":136,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":814,"start":711,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":165,"start":51,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":288,"start":227,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":708,"start":694,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73}],"query_bed":[366,439],"query_length":73,"union_overlap_bases":73},"family":"coordinate_conversion","fingerprint":"0c266e6ca2bdb211e14338b7812bea188163fc58ed6b5afc910b5edeaf56d9d1","group_id":"0c266e6ca2bdb211e14338b7812bea188163fc58ed6b5afc910b5edeaf56d9d1","id":"INTERVALS-0004004","index":4004,"input":{"contigs":{"synthetic_A":991,"synthetic_B":1762},"features":[{"basis":"one_closed","contig":"synthetic_B","end":439,"start":367,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":759,"start":656,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1163,"start":1156,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1332,"start":1310,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":830,"start":804,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":180,"start":85,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":439,"start":367,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":74},{"feature_index":2,"overlap_bases":2}],"query_bed":[90,165],"query_length":75,"union_overlap_bases":75},"family":"overlapping_blocks","fingerprint":"ff5935f61e159e2e569f03230035b7e46cfd32fbfc617651e81c7b3ec07c6f60","group_id":"ff5935f61e159e2e569f03230035b7e46cfd32fbfc617651e81c7b3ec07c6f60","id":"INTERVALS-0004012","index":4012,"input":{"contigs":{"synthetic_A":671,"synthetic_B":923},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":93,"start":87,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":165,"start":92,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":168,"start":164,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":517,"start":455,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":459,"start":419,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":513,"start":460,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":342,"start":323,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":403,"start":400,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":414,"start":296,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":890,"start":791,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":165,"start":91,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":38}],"query_bed":[438,476],"query_length":38,"union_overlap_bases":38},"family":"stranded","fingerprint":"c194953af98cd8385c86c20bc219ba20b3909862aa4c2a3300a9b70c3e39d31d","group_id":"c194953af98cd8385c86c20bc219ba20b3909862aa4c2a3300a9b70c3e39d31d","id":"INTERVALS-0004013","index":4013,"input":{"contigs":{"synthetic_A":1249,"synthetic_B":1238},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":476,"start":438,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":476,"start":438,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":848,"start":843,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":263,"start":194,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":318,"start":309,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":55,"start":53,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":426,"start":391,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":593,"start":536,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":659,"start":636,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":656,"start":606,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":690,"start":590,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":476,"start":438,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":49},{"feature_index":1,"overlap_bases":47},{"feature_index":6,"overlap_bases":43}],"query_bed":[226,275],"query_length":49,"union_overlap_bases":49},"family":"nested","fingerprint":"ccdf0dda6c3c48d48696fa9135c31a227592b2cfa8bcc296ae223fa6db7fba3d","group_id":"ccdf0dda6c3c48d48696fa9135c31a227592b2cfa8bcc296ae223fa6db7fba3d","id":"INTERVALS-0004016","index":4016,"input":{"contigs":{"synthetic_A":951,"synthetic_B":1510},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":280,"start":221,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":274,"start":228,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":354,"start":307,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1234,"start":1190,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":490,"start":386,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1195,"start":1112,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":281,"start":232,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":269,"start":192,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":573,"start":547,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":381,"start":345,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":681,"start":672,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":275,"start":227,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":37},{"feature_index":1,"overlap_bases":35}],"query_bed":[1043,1080],"query_length":37,"union_overlap_bases":37},"family":"nested","fingerprint":"d2a1c56e739928ec5073bacac74f364f68ec1f3578d8145e6f283e8ce38be7bb","group_id":"d2a1c56e739928ec5073bacac74f364f68ec1f3578d8145e6f283e8ce38be7bb","id":"INTERVALS-0004026","index":4026,"input":{"contigs":{"synthetic_A":1500,"synthetic_B":1794},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1085,"start":1038,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1079,"start":1044,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":773,"start":719,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":752,"start":738,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":500,"start":463,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":974,"start":888,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":607,"start":560,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1106,"start":999,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":894,"start":837,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1080,"start":1044,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":35}],"query_bed":[1057,1092],"query_length":35,"union_overlap_bases":35},"family":"stranded","fingerprint":"5d5238484524d95fa26c215f6e4e208d9fe896df77c647a02070fa7c39944c63","group_id":"5d5238484524d95fa26c215f6e4e208d9fe896df77c647a02070fa7c39944c63","id":"INTERVALS-0004038","index":4038,"input":{"contigs":{"synthetic_A":1733,"synthetic_B":826},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1092,"start":1057,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1092,"start":1058,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":104,"start":24,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1036,"start":1009,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":132,"start":56,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1493,"start":1476,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1627,"start":1565,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":86,"start":36,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1092,"start":1058,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[998,1063],"query_length":65,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"f99a0f5af9e142a1b06bfe4a69b3d93f259677a8b3d0b72e0a0d0ff416f062f3","group_id":"f99a0f5af9e142a1b06bfe4a69b3d93f259677a8b3d0b72e0a0d0ff416f062f3","id":"INTERVALS-0004040","index":4040,"input":{"contigs":{"synthetic_A":1787,"synthetic_B":873},"features":[{"basis":"one_closed","contig":"synthetic_A","end":998,"start":997,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1073,"start":1064,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":52,"start":17,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":938,"start":824,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":584,"start":491,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":339,"start":304,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":313,"start":259,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":424,"start":416,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1063,"start":998,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":11},{"feature_index":1,"overlap_bases":9},{"feature_index":4,"overlap_bases":11}],"query_bed":[499,510],"query_length":11,"union_overlap_bases":11},"family":"nested","fingerprint":"fa1a99ccaee21899b92771067ee81fad8fd0c71329fe3d85af99ff4d20bfc233","group_id":"fa1a99ccaee21899b92771067ee81fad8fd0c71329fe3d85af99ff4d20bfc233","id":"INTERVALS-0004051","index":4051,"input":{"contigs":{"synthetic_A":1640,"synthetic_B":1033},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":515,"start":494,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":509,"start":501,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":377,"start":331,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1269,"start":1234,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":523,"start":407,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":806,"start":723,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":554,"start":490,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":811,"start":719,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1102,"start":1056,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":510,"start":500,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":36}],"query_bed":[303,339],"query_length":36,"union_overlap_bases":36},"family":"coordinate_conversion","fingerprint":"9c7f59388390750bed395ec2ab1a6a9eeccf104390075d77e7d7a996b4ff679d","group_id":"9c7f59388390750bed395ec2ab1a6a9eeccf104390075d77e7d7a996b4ff679d","id":"INTERVALS-0004054","index":4054,"input":{"contigs":{"synthetic_A":1118,"synthetic_B":1769},"features":[{"basis":"one_closed","contig":"synthetic_B","end":339,"start":304,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":686,"start":623,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1041,"start":967,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":487,"start":439,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":854,"start":742,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":339,"start":304,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":46},{"feature_index":2,"overlap_bases":2}],"query_bed":[312,359],"query_length":47,"union_overlap_bases":47},"family":"overlapping_blocks","fingerprint":"5fb97a247f163083b740ab76d46deaac55fd8c26ba0497b1e67d3c83952427ea","group_id":"5fb97a247f163083b740ab76d46deaac55fd8c26ba0497b1e67d3c83952427ea","id":"INTERVALS-0004062","index":4062,"input":{"contigs":{"synthetic_A":717,"synthetic_B":1552},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":315,"start":309,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":359,"start":314,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":362,"start":358,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":600,"start":595,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1283,"start":1164,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":260,"start":141,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1076,"start":977,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":55,"start":11,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1383,"start":1352,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":262,"start":205,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":303,"start":271,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":359,"start":313,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":36},{"feature_index":1,"overlap_bases":34}],"query_bed":[1316,1352],"query_length":36,"union_overlap_bases":36},"family":"nested","fingerprint":"f7634b0c4b9e096744ed56c6724d0499d407c77f9b836c6ab08dac8a6cc4743b","group_id":"f7634b0c4b9e096744ed56c6724d0499d407c77f9b836c6ab08dac8a6cc4743b","id":"INTERVALS-0004076","index":4076,"input":{"contigs":{"synthetic_A":1637,"synthetic_B":877},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1357,"start":1312,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1351,"start":1318,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":210,"start":186,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":605,"start":502,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1524,"start":1446,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":182,"start":97,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":683,"start":667,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1352,"start":1316,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":40}],"query_bed":[248,288],"query_length":40,"union_overlap_bases":40},"family":"stranded","fingerprint":"0f8fa82a8e5cd543e3e5946278c6ecd82ed70d0dcc97fea84330725937014044","group_id":"0f8fa82a8e5cd543e3e5946278c6ecd82ed70d0dcc97fea84330725937014044","id":"INTERVALS-0004103","index":4103,"input":{"contigs":{"synthetic_A":638,"synthetic_B":628},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":288,"start":248,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":288,"start":249,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":562,"start":477,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":129,"start":10,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":299,"start":211,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":344,"start":332,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":204,"start":153,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":288,"start":249,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":27},{"feature_index":1,"overlap_bases":25}],"query_bed":[703,730],"query_length":27,"union_overlap_bases":27},"family":"nested","fingerprint":"2cd095ca191272e73183f51ebad248936529cc07508f1109eef6b3f445f17ed5","group_id":"2cd095ca191272e73183f51ebad248936529cc07508f1109eef6b3f445f17ed5","id":"INTERVALS-0004121","index":4121,"input":{"contigs":{"synthetic_A":869,"synthetic_B":1565},"features":[{"basis":"one_closed","contig":"synthetic_B","end":735,"start":699,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":729,"start":705,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":638,"start":560,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":499,"start":458,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":401,"start":348,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":598,"start":585,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":119,"start":48,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":175,"start":91,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":190,"start":146,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":134,"start":16,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1000,"start":978,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":730,"start":703,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":52},{"feature_index":3,"overlap_bases":19}],"query_bed":[107,159],"query_length":52,"union_overlap_bases":52},"family":"coordinate_conversion","fingerprint":"1da4fa2846eafb5e0165c57c871a8ca3215af6130a1013951737d4ee41e07fc8","group_id":"1da4fa2846eafb5e0165c57c871a8ca3215af6130a1013951737d4ee41e07fc8","id":"INTERVALS-0004129","index":4129,"input":{"contigs":{"synthetic_A":801,"synthetic_B":1514},"features":[{"basis":"one_closed","contig":"synthetic_A","end":159,"start":108,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":673,"start":632,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":420,"start":394,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":252,"start":141,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":89,"start":29,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1354,"start":1300,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":159,"start":108,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":34},{"feature_index":1,"overlap_bases":32}],"query_bed":[636,670],"query_length":34,"union_overlap_bases":34},"family":"nested","fingerprint":"614a2ece6d7ecf480fdd5d313b4c446fe024dc5de694d9e83a8ca240ef3f8320","group_id":"614a2ece6d7ecf480fdd5d313b4c446fe024dc5de694d9e83a8ca240ef3f8320","id":"INTERVALS-0004131","index":4131,"input":{"contigs":{"synthetic_A":1053,"synthetic_B":868},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":675,"start":631,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":669,"start":637,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":476,"start":424,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":246,"start":163,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":593,"start":553,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":271,"start":236,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":476,"start":455,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":200,"start":186,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":254,"start":169,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":670,"start":636,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":77},{"feature_index":2,"overlap_bases":2}],"query_bed":[916,994],"query_length":78,"union_overlap_bases":78},"family":"overlapping_blocks","fingerprint":"5245b9842940a98a11dbf5e66caf8ff53263d31896aabf6c559035899f26f89c","group_id":"5245b9842940a98a11dbf5e66caf8ff53263d31896aabf6c559035899f26f89c","id":"INTERVALS-0004132","index":4132,"input":{"contigs":{"synthetic_A":1768,"synthetic_B":1307},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":919,"start":913,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":994,"start":918,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":997,"start":993,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":588,"start":565,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1039,"start":994,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":615,"start":574,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":796,"start":696,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":994,"start":917,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":75}],"query_bed":[33,108],"query_length":75,"union_overlap_bases":75},"family":"stranded","fingerprint":"6bff868ec4207734f19f4cccf29a93d6676e2ebd1dc2db7c10b5bb310d78e2ad","group_id":"6bff868ec4207734f19f4cccf29a93d6676e2ebd1dc2db7c10b5bb310d78e2ad","id":"INTERVALS-0004148","index":4148,"input":{"contigs":{"synthetic_A":1019,"synthetic_B":1209},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":108,"start":33,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":108,"start":33,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":803,"start":712,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":594,"start":522,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":246,"start":157,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":378,"start":293,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":108,"start":33,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":69},{"feature_index":1,"overlap_bases":67}],"query_bed":[429,498],"query_length":69,"union_overlap_bases":69},"family":"nested","fingerprint":"3b4f2e0ef62d6ff35044b5272de89fae915cafe3c7e5079f5b901a9524f0184e","group_id":"3b4f2e0ef62d6ff35044b5272de89fae915cafe3c7e5079f5b901a9524f0184e","id":"INTERVALS-0004166","index":4166,"input":{"contigs":{"synthetic_A":1443,"synthetic_B":1484},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":503,"start":424,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":497,"start":430,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":220,"start":105,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":738,"start":736,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":152,"start":144,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1062,"start":961,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":795,"start":682,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":980,"start":945,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1158,"start":1053,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":135,"start":86,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":107,"start":72,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":498,"start":429,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[206,246],"query_length":40,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"67ed5648ef29ead0a758059ba733f8c6b4cd721cf62aff2c9c4df6771d2dc673","group_id":"67ed5648ef29ead0a758059ba733f8c6b4cd721cf62aff2c9c4df6771d2dc673","id":"INTERVALS-0004175","index":4175,"input":{"contigs":{"synthetic_A":834,"synthetic_B":1073},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":206,"start":190,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":266,"start":246,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":493,"start":461,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":591,"start":549,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":523,"start":515,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":570,"start":566,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":246,"start":207,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":69},{"feature_index":2,"overlap_bases":2}],"query_bed":[513,583],"query_length":70,"union_overlap_bases":70},"family":"overlapping_blocks","fingerprint":"d6b089425148c78dc2d9801ef7db3a871a6b72775992e99bb4d5d37bb9c9f475","group_id":"d6b089425148c78dc2d9801ef7db3a871a6b72775992e99bb4d5d37bb9c9f475","id":"INTERVALS-0004182","index":4182,"input":{"contigs":{"synthetic_A":1629,"synthetic_B":1659},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":516,"start":510,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":583,"start":514,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":586,"start":582,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":209,"start":129,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":739,"start":640,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":227,"start":140,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1173,"start":1108,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":177,"start":174,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":583,"start":514,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":13}],"query_bed":[340,353],"query_length":13,"union_overlap_bases":13},"family":"coordinate_conversion","fingerprint":"4d4d9fa0e49031f76621f7f2d4f8383edf02bff8df8be2860c91f3ff505839d9","group_id":"4d4d9fa0e49031f76621f7f2d4f8383edf02bff8df8be2860c91f3ff505839d9","id":"INTERVALS-0004194","index":4194,"input":{"contigs":{"synthetic_A":926,"synthetic_B":1341},"features":[{"basis":"one_closed","contig":"synthetic_B","end":353,"start":341,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":815,"start":730,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":316,"start":279,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":538,"start":510,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1093,"start":990,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1017,"start":939,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":98,"start":62,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":353,"start":341,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":40},{"feature_index":4,"overlap_bases":19}],"query_bed":[569,609],"query_length":40,"union_overlap_bases":40},"family":"stranded","fingerprint":"242556541333beb1626c37caf00e873f8df852b45579c3cc01dcf3b387bf2114","group_id":"242556541333beb1626c37caf00e873f8df852b45579c3cc01dcf3b387bf2114","id":"INTERVALS-0004203","index":4203,"input":{"contigs":{"synthetic_A":948,"synthetic_B":1275},"features":[{"basis":"one_closed","contig":"synthetic_B","end":609,"start":570,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":609,"start":570,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":891,"start":877,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":263,"start":220,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":588,"start":508,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":750,"start":649,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":449,"start":415,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":265,"start":171,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":609,"start":569,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[497,542],"query_length":45,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"32241dbca9f6f417647e63f4df6bcee8ecd1a6e05520be9de394a7fcf8053685","group_id":"32241dbca9f6f417647e63f4df6bcee8ecd1a6e05520be9de394a7fcf8053685","id":"INTERVALS-0004215","index":4215,"input":{"contigs":{"synthetic_A":1663,"synthetic_B":1145},"features":[{"basis":"one_closed","contig":"synthetic_A","end":497,"start":482,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":573,"start":543,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":961,"start":849,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":679,"start":581,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":312,"start":216,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":542,"start":497,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":45},{"feature_index":1,"overlap_bases":43}],"query_bed":[936,981],"query_length":45,"union_overlap_bases":45},"family":"nested","fingerprint":"e506d1f4164e79f03de82aafeb886de833ec38fbc08d3ab5d30e1e260993f099","group_id":"e506d1f4164e79f03de82aafeb886de833ec38fbc08d3ab5d30e1e260993f099","id":"INTERVALS-0004216","index":4216,"input":{"contigs":{"synthetic_A":1143,"synthetic_B":854},"features":[{"basis":"one_closed","contig":"synthetic_A","end":986,"start":932,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":980,"start":937,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":731,"start":715,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":272,"start":237,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":807,"start":702,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":337,"start":248,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":510,"start":465,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":515,"start":511,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":102,"start":72,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":216,"start":201,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":75,"start":47,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":981,"start":937,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":6,"overlap_bases":4}],"query_bed":[274,280],"query_length":6,"union_overlap_bases":4},"family":"touching_boundary","fingerprint":"6a0065ba359cafec4a64fce8a9d320b401dff8b661ee2d38ce98e1b1dc18b56f","group_id":"6a0065ba359cafec4a64fce8a9d320b401dff8b661ee2d38ce98e1b1dc18b56f","id":"INTERVALS-0004225","index":4225,"input":{"contigs":{"synthetic_A":644,"synthetic_B":1436},"features":[{"basis":"one_closed","contig":"synthetic_A","end":274,"start":258,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":307,"start":281,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":595,"start":481,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":221,"start":176,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":963,"start":849,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":556,"start":510,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":326,"start":277,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":769,"start":738,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":662,"start":581,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":71,"start":10,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":583,"start":577,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":280,"start":274,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":75},{"feature_index":5,"overlap_bases":58}],"query_bed":[319,394],"query_length":75,"union_overlap_bases":75},"family":"coordinate_conversion","fingerprint":"32946126ce0dcc725abff10572d882557ebee049a214b79a5e11e369db5e2bd7","group_id":"32946126ce0dcc725abff10572d882557ebee049a214b79a5e11e369db5e2bd7","id":"INTERVALS-0004249","index":4249,"input":{"contigs":{"synthetic_A":1175,"synthetic_B":1028},"features":[{"basis":"one_closed","contig":"synthetic_B","end":394,"start":320,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":747,"start":680,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":367,"start":364,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":157,"start":113,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":634,"start":521,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":417,"start":337,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":639,"start":544,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":928,"start":847,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":300,"start":213,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":726,"start":705,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":976,"start":876,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":394,"start":320,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":72}],"query_bed":[384,456],"query_length":72,"union_overlap_bases":72},"family":"stranded","fingerprint":"9135edc69dfb9f0fd4f2c06fab68e608c3c3963348980e04ed12c48d6364eb83","group_id":"9135edc69dfb9f0fd4f2c06fab68e608c3c3963348980e04ed12c48d6364eb83","id":"INTERVALS-0004258","index":4258,"input":{"contigs":{"synthetic_A":897,"synthetic_B":1009},"features":[{"basis":"one_closed","contig":"synthetic_B","end":456,"start":385,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":456,"start":385,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":69,"start":46,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":174,"start":142,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":457,"start":445,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":647,"start":579,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":644,"start":611,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":300,"start":193,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":292,"start":255,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":456,"start":384,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":40}],"query_bed":[254,294],"query_length":40,"union_overlap_bases":40},"family":"coordinate_conversion","fingerprint":"34e9c66494e283afebe3e3a51d0bfed2ee1de2f376f5fcb524c08f95e168f371","group_id":"34e9c66494e283afebe3e3a51d0bfed2ee1de2f376f5fcb524c08f95e168f371","id":"INTERVALS-0004259","index":4259,"input":{"contigs":{"synthetic_A":1105,"synthetic_B":1076},"features":[{"basis":"one_closed","contig":"synthetic_A","end":294,"start":255,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":751,"start":650,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":398,"start":324,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":218,"start":204,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":844,"start":749,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":204,"start":158,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":884,"start":874,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":294,"start":255,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":8},{"feature_index":2,"overlap_bases":2}],"query_bed":[994,1003],"query_length":9,"union_overlap_bases":9},"family":"overlapping_blocks","fingerprint":"f7c1fabc9bddb3e856a1a09f746bd5ce6e6590b1da52a5a62cb5fcc26c57cc5a","group_id":"f7c1fabc9bddb3e856a1a09f746bd5ce6e6590b1da52a5a62cb5fcc26c57cc5a","id":"INTERVALS-0004267","index":4267,"input":{"contigs":{"synthetic_A":1273,"synthetic_B":1249},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":997,"start":991,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1003,"start":996,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1006,"start":1001,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":790,"start":711,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":442,"start":412,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":569,"start":514,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1089,"start":993,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1151,"start":1057,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":785,"start":727,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":392,"start":369,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1003,"start":995,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[330,381],"query_length":51,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"8db46cf4443da8f3fd3f6d19c03ab532b3b1283bf8bf8d0911f62537b2eed96c","group_id":"8db46cf4443da8f3fd3f6d19c03ab532b3b1283bf8bf8d0911f62537b2eed96c","id":"INTERVALS-0004275","index":4275,"input":{"contigs":{"synthetic_A":1568,"synthetic_B":603},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":330,"start":322,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":405,"start":381,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":317,"start":269,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1298,"start":1202,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":62,"start":31,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":494,"start":401,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":381,"start":331,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18}],"query_bed":[747,765],"query_length":18,"union_overlap_bases":18},"family":"stranded","fingerprint":"e4b1a8d2e5550cbbac31aaf52b955d1c64f004f99b7a281e1da5dadcc6f122b7","group_id":"e4b1a8d2e5550cbbac31aaf52b955d1c64f004f99b7a281e1da5dadcc6f122b7","id":"INTERVALS-0004278","index":4278,"input":{"contigs":{"synthetic_A":962,"synthetic_B":1775},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":765,"start":747,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":765,"start":747,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1426,"start":1382,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1271,"start":1197,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":585,"start":520,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1266,"start":1210,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":142,"start":99,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":640,"start":542,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":565,"start":503,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":510,"start":392,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":325,"start":306,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":765,"start":748,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[729,756],"query_length":27,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"2750eda2261ee5c647c496f2a8b1586048b11a00a18ddad41f0985f70548d31b","group_id":"2750eda2261ee5c647c496f2a8b1586048b11a00a18ddad41f0985f70548d31b","id":"INTERVALS-0004280","index":4280,"input":{"contigs":{"synthetic_A":1790,"synthetic_B":1633},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":729,"start":716,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":796,"start":756,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1586,"start":1493,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":405,"start":298,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":879,"start":780,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":879,"start":802,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":930,"start":848,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":839,"start":762,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1279,"start":1256,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":957,"start":886,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":279,"start":229,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":756,"start":730,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":33},{"feature_index":3,"overlap_bases":21}],"query_bed":[208,241],"query_length":33,"union_overlap_bases":33},"family":"stranded","fingerprint":"4ced15f49be0a014958036197940326a028563b001eba06e3a4f371f1dbe4f96","group_id":"4ced15f49be0a014958036197940326a028563b001eba06e3a4f371f1dbe4f96","id":"INTERVALS-0004283","index":4283,"input":{"contigs":{"synthetic_A":1550,"synthetic_B":1781},"features":[{"basis":"one_closed","contig":"synthetic_A","end":241,"start":209,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":241,"start":209,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1131,"start":1086,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":236,"start":215,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":669,"start":658,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1052,"start":1021,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1580,"start":1472,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":425,"start":312,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1355,"start":1284,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":596,"start":558,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":660,"start":651,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":241,"start":208,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[568,579],"query_length":11,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"5784dd628acee50060cc393958bade81ddd6c38f42bf84c2af6b0e4df611ecdf","group_id":"5784dd628acee50060cc393958bade81ddd6c38f42bf84c2af6b0e4df611ecdf","id":"INTERVALS-0004285","index":4285,"input":{"contigs":{"synthetic_A":892,"synthetic_B":1673},"features":[{"basis":"one_closed","contig":"synthetic_A","end":568,"start":549,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":611,"start":580,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1089,"start":1006,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":665,"start":579,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":296,"start":219,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":622,"start":527,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":284,"start":268,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1120,"start":1081,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":104,"start":7,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":41,"start":34,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":360,"start":356,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":579,"start":569,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":52}],"query_bed":[731,783],"query_length":52,"union_overlap_bases":52},"family":"stranded","fingerprint":"cb5c08b444c2848b7baa2a100aa8143bb8926969c5d2ed1904a5f6e580c19781","group_id":"cb5c08b444c2848b7baa2a100aa8143bb8926969c5d2ed1904a5f6e580c19781","id":"INTERVALS-0004288","index":4288,"input":{"contigs":{"synthetic_A":1516,"synthetic_B":1233},"features":[{"basis":"one_closed","contig":"synthetic_B","end":783,"start":732,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":783,"start":731,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":144,"start":57,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1277,"start":1160,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1164,"start":1059,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":163,"start":150,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1181,"start":1061,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":783,"start":732,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":57},{"feature_index":2,"overlap_bases":2},{"feature_index":4,"overlap_bases":11}],"query_bed":[622,680],"query_length":58,"union_overlap_bases":58},"family":"overlapping_blocks","fingerprint":"a40ed20a3b6190211a1556da206bd5e8653be4a36a51ceb0f2c070aaab933b28","group_id":"a40ed20a3b6190211a1556da206bd5e8653be4a36a51ceb0f2c070aaab933b28","id":"INTERVALS-0004302","index":4302,"input":{"contigs":{"synthetic_A":1748,"synthetic_B":1573},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":625,"start":619,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":680,"start":623,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":683,"start":679,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1093,"start":1001,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":633,"start":598,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":432,"start":420,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":523,"start":478,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":495,"start":386,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":97,"start":13,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":304,"start":300,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":680,"start":622,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":66},{"feature_index":1,"overlap_bases":64}],"query_bed":[361,427],"query_length":66,"union_overlap_bases":66},"family":"nested","fingerprint":"2f8893b2408dc48c89bcb34369192672a4cc471f0f01806a23b23b3831cafa21","group_id":"2f8893b2408dc48c89bcb34369192672a4cc471f0f01806a23b23b3831cafa21","id":"INTERVALS-0004306","index":4306,"input":{"contigs":{"synthetic_A":1522,"synthetic_B":901},"features":[{"basis":"one_closed","contig":"synthetic_A","end":432,"start":357,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":426,"start":362,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":330,"start":224,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":235,"start":219,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":651,"start":543,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":427,"start":361,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[268,332],"query_length":64,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"db62db3ecd59c9d20452a286b54f25991fdab472fdcfef4e278fff8d8f351c21","group_id":"db62db3ecd59c9d20452a286b54f25991fdab472fdcfef4e278fff8d8f351c21","id":"INTERVALS-0004320","index":4320,"input":{"contigs":{"synthetic_A":767,"synthetic_B":1471},"features":[{"basis":"one_closed","contig":"synthetic_B","end":268,"start":264,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":369,"start":333,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":720,"start":691,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1325,"start":1207,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":666,"start":567,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":41,"start":13,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":548,"start":504,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1146,"start":1123,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":173,"start":120,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":175,"start":113,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":233,"start":113,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":332,"start":268,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[602,673],"query_length":71,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"9b0cb7c6b5a253a98cb089f81ff7d3ea32609e771cee33115cf6380a5bea0f53","group_id":"9b0cb7c6b5a253a98cb089f81ff7d3ea32609e771cee33115cf6380a5bea0f53","id":"INTERVALS-0004325","index":4325,"input":{"contigs":{"synthetic_A":757,"synthetic_B":1049},"features":[{"basis":"one_closed","contig":"synthetic_B","end":602,"start":597,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":710,"start":673,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":239,"start":120,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":642,"start":559,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":232,"start":139,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":753,"start":719,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":573,"start":567,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":817,"start":779,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":673,"start":603,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":68},{"feature_index":2,"overlap_bases":2},{"feature_index":8,"overlap_bases":19}],"query_bed":[796,865],"query_length":69,"union_overlap_bases":69},"family":"overlapping_blocks","fingerprint":"03076d7c1e5e559801de4d5eddb681c5cdd6ca790cc15eac323de6c6fbf179a2","group_id":"03076d7c1e5e559801de4d5eddb681c5cdd6ca790cc15eac323de6c6fbf179a2","id":"INTERVALS-0004332","index":4332,"input":{"contigs":{"synthetic_A":1781,"synthetic_B":1572},"features":[{"basis":"one_closed","contig":"synthetic_B","end":799,"start":794,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":865,"start":798,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":868,"start":863,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1244,"start":1158,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1496,"start":1423,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":621,"start":580,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":76,"start":38,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":486,"start":437,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":917,"start":846,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":865,"start":797,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32}],"query_bed":[229,261],"query_length":32,"union_overlap_bases":32},"family":"coordinate_conversion","fingerprint":"71456d48682fc310515816a6279c1de9d112e314cc42d24128868dfd129ac681","group_id":"71456d48682fc310515816a6279c1de9d112e314cc42d24128868dfd129ac681","id":"INTERVALS-0004334","index":4334,"input":{"contigs":{"synthetic_A":900,"synthetic_B":1076},"features":[{"basis":"one_closed","contig":"synthetic_A","end":261,"start":230,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":216,"start":152,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1027,"start":925,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":381,"start":291,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":556,"start":510,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":690,"start":597,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":200,"start":147,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":173,"start":86,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":261,"start":230,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":42},{"feature_index":1,"overlap_bases":40}],"query_bed":[42,84],"query_length":42,"union_overlap_bases":42},"family":"nested","fingerprint":"ea18cad0ca9895fd23d93bd62db278558cdd5816abac4309298f0185d6ba7e98","group_id":"ea18cad0ca9895fd23d93bd62db278558cdd5816abac4309298f0185d6ba7e98","id":"INTERVALS-0004336","index":4336,"input":{"contigs":{"synthetic_A":1133,"synthetic_B":768},"features":[{"basis":"one_closed","contig":"synthetic_B","end":89,"start":38,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":83,"start":44,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":177,"start":105,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":92,"start":57,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":820,"start":809,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":508,"start":390,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":84,"start":42,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":53},{"feature_index":2,"overlap_bases":2}],"query_bed":[293,347],"query_length":54,"union_overlap_bases":54},"family":"overlapping_blocks","fingerprint":"9aed9418808d7814e421e6065199c214b3d89a301e28c9126bf777a3326aaa73","group_id":"9aed9418808d7814e421e6065199c214b3d89a301e28c9126bf777a3326aaa73","id":"INTERVALS-0004337","index":4337,"input":{"contigs":{"synthetic_A":1303,"synthetic_B":647},"features":[{"basis":"one_closed","contig":"synthetic_B","end":296,"start":291,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":347,"start":294,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":350,"start":346,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":759,"start":715,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":200,"start":163,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":347,"start":231,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":266,"start":258,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":310,"start":234,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":188,"start":137,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":25,"start":18,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":154,"start":69,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":347,"start":293,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":36}],"query_bed":[825,861],"query_length":36,"union_overlap_bases":36},"family":"coordinate_conversion","fingerprint":"9e121c221c2e73c1a422a8b69c6c7d30621df5693b84ac02ddd5cac11276bece","group_id":"9e121c221c2e73c1a422a8b69c6c7d30621df5693b84ac02ddd5cac11276bece","id":"INTERVALS-0004344","index":4344,"input":{"contigs":{"synthetic_A":1647,"synthetic_B":1445},"features":[{"basis":"one_closed","contig":"synthetic_B","end":861,"start":826,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1129,"start":1062,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":325,"start":292,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":379,"start":287,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":372,"start":342,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":835,"start":737,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1281,"start":1197,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":467,"start":449,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":522,"start":476,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1368,"start":1338,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":988,"start":885,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":861,"start":826,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":2,"overlap_bases":41}],"query_bed":[121,185],"query_length":64,"union_overlap_bases":41},"family":"touching_boundary","fingerprint":"80933230c3631c95d726100d3a4b5a200396ee91e9a479ad6de9fd1d545c7996","group_id":"80933230c3631c95d726100d3a4b5a200396ee91e9a479ad6de9fd1d545c7996","id":"INTERVALS-0004350","index":4350,"input":{"contigs":{"synthetic_A":1151,"synthetic_B":615},"features":[{"basis":"one_closed","contig":"synthetic_A","end":121,"start":103,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":190,"start":185,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":162,"start":47,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":938,"start":831,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":97,"start":6,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":185,"start":122,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":55}],"query_bed":[468,523],"query_length":55,"union_overlap_bases":55},"family":"coordinate_conversion","fingerprint":"0225442e86df1fb228a3d9950d1c9dbe68234f74d9629866d595033d32f791da","group_id":"0225442e86df1fb228a3d9950d1c9dbe68234f74d9629866d595033d32f791da","id":"INTERVALS-0004369","index":4369,"input":{"contigs":{"synthetic_A":734,"synthetic_B":974},"features":[{"basis":"one_closed","contig":"synthetic_A","end":523,"start":469,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":361,"start":294,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":348,"start":310,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":226,"start":191,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":942,"start":845,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":648,"start":604,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":667,"start":583,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":681,"start":662,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":545,"start":502,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":523,"start":469,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[388,425],"query_length":37,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"d459b7ea1a69b9cc159914dca7388ea10ee1e2954d3b45ee8777321f22847cb5","group_id":"d459b7ea1a69b9cc159914dca7388ea10ee1e2954d3b45ee8777321f22847cb5","id":"INTERVALS-0004370","index":4370,"input":{"contigs":{"synthetic_A":1641,"synthetic_B":1417},"features":[{"basis":"one_closed","contig":"synthetic_B","end":388,"start":372,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":429,"start":425,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":217,"start":130,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1364,"start":1305,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1295,"start":1283,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1276,"start":1222,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1311,"start":1233,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":460,"start":377,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":175,"start":76,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":425,"start":388,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":43},{"feature_index":2,"overlap_bases":2}],"query_bed":[43,87],"query_length":44,"union_overlap_bases":44},"family":"overlapping_blocks","fingerprint":"8934a158cdda679dd761151bf0c49e9d5754965ed972c92ca6f9e1c9d653e059","group_id":"8934a158cdda679dd761151bf0c49e9d5754965ed972c92ca6f9e1c9d653e059","id":"INTERVALS-0004372","index":4372,"input":{"contigs":{"synthetic_A":928,"synthetic_B":1120},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":46,"start":40,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":87,"start":44,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":90,"start":86,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":603,"start":512,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":111,"start":1,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":539,"start":432,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":367,"start":290,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":176,"start":130,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":566,"start":487,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":156,"start":111,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":528,"start":516,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1031,"start":923,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":87,"start":44,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56},{"feature_index":1,"overlap_bases":54}],"query_bed":[1177,1233],"query_length":56,"union_overlap_bases":56},"family":"nested","fingerprint":"f6c601e418e4bec441a00536a675f60cf27036ffca62a273d28eee512d7e703a","group_id":"f6c601e418e4bec441a00536a675f60cf27036ffca62a273d28eee512d7e703a","id":"INTERVALS-0004376","index":4376,"input":{"contigs":{"synthetic_A":1475,"synthetic_B":1701},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1238,"start":1173,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1232,"start":1179,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1233,"start":1159,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":865,"start":785,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":707,"start":676,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1426,"start":1308,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":764,"start":726,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":623,"start":593,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":921,"start":903,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":355,"start":252,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":908,"start":789,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1233,"start":1178,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":15},{"feature_index":1,"overlap_bases":13}],"query_bed":[299,314],"query_length":15,"union_overlap_bases":15},"family":"nested","fingerprint":"72b0de06a4f984f183f85f93699d11c056b405413ecef88429fe56620482c2f3","group_id":"72b0de06a4f984f183f85f93699d11c056b405413ecef88429fe56620482c2f3","id":"INTERVALS-0004386","index":4386,"input":{"contigs":{"synthetic_A":997,"synthetic_B":924},"features":[{"basis":"one_closed","contig":"synthetic_A","end":319,"start":295,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":313,"start":300,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":157,"start":87,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":611,"start":595,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":275,"start":161,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":260,"start":204,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":141,"start":85,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":293,"start":268,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":481,"start":379,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":196,"start":137,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":550,"start":449,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":314,"start":299,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[26,78],"query_length":52,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"525b09f69b82e0ab2756d232b66ebbe2d00cf91c1ee724ad30440acf3d651dec","group_id":"525b09f69b82e0ab2756d232b66ebbe2d00cf91c1ee724ad30440acf3d651dec","id":"INTERVALS-0004390","index":4390,"input":{"contigs":{"synthetic_A":1487,"synthetic_B":1126},"features":[{"basis":"one_closed","contig":"synthetic_A","end":26,"start":16,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":100,"start":78,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1004,"start":896,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":690,"start":674,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":545,"start":457,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":467,"start":431,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1022,"start":916,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":403,"start":338,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":476,"start":384,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":135,"start":88,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":332,"start":285,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":77,"start":61,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":78,"start":27,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":62},{"feature_index":2,"overlap_bases":2}],"query_bed":[388,451],"query_length":63,"union_overlap_bases":63},"family":"overlapping_blocks","fingerprint":"55a5e892e5ab9575edc8eace9546550afc593b1b6164152acad1799a692d89e1","group_id":"55a5e892e5ab9575edc8eace9546550afc593b1b6164152acad1799a692d89e1","id":"INTERVALS-0004392","index":4392,"input":{"contigs":{"synthetic_A":669,"synthetic_B":1016},"features":[{"basis":"one_closed","contig":"synthetic_B","end":391,"start":386,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":451,"start":389,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":454,"start":450,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":453,"start":339,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":320,"start":285,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":103,"start":88,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":780,"start":679,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":433,"start":403,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":451,"start":389,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[176,194],"query_length":18,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"6616a46e97dcc2851aca151636cc7079377f58b0e9de64c677e5bb8a40893c34","group_id":"6616a46e97dcc2851aca151636cc7079377f58b0e9de64c677e5bb8a40893c34","id":"INTERVALS-0004410","index":4410,"input":{"contigs":{"synthetic_A":1013,"synthetic_B":830},"features":[{"basis":"one_closed","contig":"synthetic_A","end":176,"start":159,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":202,"start":195,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":545,"start":440,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":692,"start":651,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":628,"start":527,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":194,"start":176,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":3,"overlap_bases":11}],"query_bed":[396,459],"query_length":63,"union_overlap_bases":11},"family":"touching_boundary","fingerprint":"1b657968dc6ea68e04d2451fea8c9c802f2e59c974c8f4e5496bf7074a84d7f0","group_id":"1b657968dc6ea68e04d2451fea8c9c802f2e59c974c8f4e5496bf7074a84d7f0","id":"INTERVALS-0004415","index":4415,"input":{"contigs":{"synthetic_A":1424,"synthetic_B":1700},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":396,"start":389,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":497,"start":460,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":364,"start":264,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":524,"start":449,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1149,"start":1085,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":459,"start":397,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":40},{"feature_index":2,"overlap_bases":2}],"query_bed":[372,413],"query_length":41,"union_overlap_bases":41},"family":"overlapping_blocks","fingerprint":"167eb9dc7862dcf130ec74b953ab9e62d2b65aa0b10f2ad422f5f34c8f302b79","group_id":"167eb9dc7862dcf130ec74b953ab9e62d2b65aa0b10f2ad422f5f34c8f302b79","id":"INTERVALS-0004422","index":4422,"input":{"contigs":{"synthetic_A":1600,"synthetic_B":1221},"features":[{"basis":"one_closed","contig":"synthetic_A","end":375,"start":370,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":413,"start":374,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":416,"start":412,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":994,"start":966,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":921,"start":904,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":257,"start":255,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":313,"start":266,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":413,"start":372,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":40}],"query_bed":[1036,1076],"query_length":40,"union_overlap_bases":40},"family":"stranded","fingerprint":"489fb2d67fa673b339560984d10cd8a958b300f5ccf04ade766e01a00ea6c99a","group_id":"489fb2d67fa673b339560984d10cd8a958b300f5ccf04ade766e01a00ea6c99a","id":"INTERVALS-0004433","index":4433,"input":{"contigs":{"synthetic_A":1321,"synthetic_B":1550},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1076,"start":1037,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1076,"start":1037,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":865,"start":754,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":317,"start":230,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1289,"start":1286,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":381,"start":264,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":266,"start":226,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":512,"start":470,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1058,"start":1040,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":741,"start":724,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1076,"start":1036,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73}],"query_bed":[176,249],"query_length":73,"union_overlap_bases":73},"family":"coordinate_conversion","fingerprint":"64e12772a6ca882fd34a564ec0e7af14260be95c1ac0a291f907d60e839e3c25","group_id":"64e12772a6ca882fd34a564ec0e7af14260be95c1ac0a291f907d60e839e3c25","id":"INTERVALS-0004439","index":4439,"input":{"contigs":{"synthetic_A":783,"synthetic_B":1697},"features":[{"basis":"one_closed","contig":"synthetic_B","end":249,"start":177,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":396,"start":285,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1535,"start":1416,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":517,"start":415,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":561,"start":462,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":289,"start":213,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":245,"start":169,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":696,"start":641,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":531,"start":498,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":249,"start":177,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":69},{"feature_index":1,"overlap_bases":67}],"query_bed":[639,708],"query_length":69,"union_overlap_bases":69},"family":"nested","fingerprint":"a9c7447ac4c04430ef2000c73d2c9e9f9ba4b8f619524edcc4d685c81c036988","group_id":"a9c7447ac4c04430ef2000c73d2c9e9f9ba4b8f619524edcc4d685c81c036988","id":"INTERVALS-0004476","index":4476,"input":{"contigs":{"synthetic_A":1126,"synthetic_B":1596},"features":[{"basis":"one_closed","contig":"synthetic_B","end":713,"start":635,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":707,"start":640,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":54,"start":22,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":982,"start":863,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":785,"start":677,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":992,"start":962,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":513,"start":411,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":331,"start":265,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":115,"start":66,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":708,"start":639,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":67},{"feature_index":1,"overlap_bases":65}],"query_bed":[1084,1151],"query_length":67,"union_overlap_bases":67},"family":"nested","fingerprint":"b423f67a4740f5269753d08da8bc19e43ce09062d781ef7eaa823ef65a92a1a5","group_id":"b423f67a4740f5269753d08da8bc19e43ce09062d781ef7eaa823ef65a92a1a5","id":"INTERVALS-0004481","index":4481,"input":{"contigs":{"synthetic_A":1408,"synthetic_B":712},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1156,"start":1079,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1150,"start":1086,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":917,"start":814,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1372,"start":1259,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":91,"start":58,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":194,"start":153,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1151,"start":1085,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":38}],"query_bed":[106,144],"query_length":38,"union_overlap_bases":38},"family":"coordinate_conversion","fingerprint":"01a989f632bf85f34e26c990da412926d4096847b24734d39f968ecec6841478","group_id":"01a989f632bf85f34e26c990da412926d4096847b24734d39f968ecec6841478","id":"INTERVALS-0004489","index":4489,"input":{"contigs":{"synthetic_A":1305,"synthetic_B":1416},"features":[{"basis":"one_closed","contig":"synthetic_A","end":144,"start":107,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":928,"start":822,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":530,"start":418,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1277,"start":1177,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":589,"start":512,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":770,"start":656,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":879,"start":776,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":989,"start":955,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":731,"start":680,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":144,"start":107,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":46},{"feature_index":2,"overlap_bases":2},{"feature_index":9,"overlap_bases":47}],"query_bed":[536,583],"query_length":47,"union_overlap_bases":47},"family":"overlapping_blocks","fingerprint":"b7ecfe5a1bbd2230161dddfd9c5c643218784dfe41165b7ed8cbb8c86b61738f","group_id":"b7ecfe5a1bbd2230161dddfd9c5c643218784dfe41165b7ed8cbb8c86b61738f","id":"INTERVALS-0004537","index":4537,"input":{"contigs":{"synthetic_A":1335,"synthetic_B":812},"features":[{"basis":"one_closed","contig":"synthetic_A","end":539,"start":534,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":583,"start":538,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":586,"start":582,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":361,"start":276,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":164,"start":126,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":265,"start":159,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":746,"start":640,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":250,"start":189,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":794,"start":703,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":606,"start":500,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":732,"start":679,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":962,"start":905,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":583,"start":536,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":52}],"query_bed":[86,138],"query_length":52,"union_overlap_bases":52},"family":"stranded","fingerprint":"37de4a3421a33ce7c3a767c6bd8c859f23ec2575873bd34f4d6403640d362d1c","group_id":"37de4a3421a33ce7c3a767c6bd8c859f23ec2575873bd34f4d6403640d362d1c","id":"INTERVALS-0004538","index":4538,"input":{"contigs":{"synthetic_A":1233,"synthetic_B":1634},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":138,"start":86,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":138,"start":87,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":146,"start":107,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":833,"start":788,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":442,"start":434,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":707,"start":689,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":138,"start":86,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":77}],"query_bed":[297,374],"query_length":77,"union_overlap_bases":77},"family":"coordinate_conversion","fingerprint":"15ef22e0b4ae3242f45c84d44efec2eebb53dc053066842b0ff352b70f4dae69","group_id":"15ef22e0b4ae3242f45c84d44efec2eebb53dc053066842b0ff352b70f4dae69","id":"INTERVALS-0004539","index":4539,"input":{"contigs":{"synthetic_A":791,"synthetic_B":1186},"features":[{"basis":"one_closed","contig":"synthetic_A","end":374,"start":298,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":217,"start":112,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":140,"start":127,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":688,"start":610,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":909,"start":872,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":224,"start":181,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":117,"start":110,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":687,"start":623,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":117,"start":37,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":374,"start":298,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":23},{"feature_index":2,"overlap_bases":2}],"query_bed":[564,588],"query_length":24,"union_overlap_bases":24},"family":"overlapping_blocks","fingerprint":"a676a428ca63effafece0829eac25d28310062f6b8cff373aac170c14e363f91","group_id":"a676a428ca63effafece0829eac25d28310062f6b8cff373aac170c14e363f91","id":"INTERVALS-0004552","index":4552,"input":{"contigs":{"synthetic_A":1755,"synthetic_B":1343},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":567,"start":561,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":588,"start":566,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":591,"start":587,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":269,"start":253,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1086,"start":1050,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":13,"start":12,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":666,"start":583,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":761,"start":672,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":441,"start":396,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":588,"start":564,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":6},{"feature_index":2,"overlap_bases":2}],"query_bed":[738,745],"query_length":7,"union_overlap_bases":7},"family":"overlapping_blocks","fingerprint":"9caf44d6cc04a578b816e6459480a5cb37dea98d246a70ee71a9a6609c0ad062","group_id":"9caf44d6cc04a578b816e6459480a5cb37dea98d246a70ee71a9a6609c0ad062","id":"INTERVALS-0004567","index":4567,"input":{"contigs":{"synthetic_A":1396,"synthetic_B":1410},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":741,"start":735,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":745,"start":740,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":748,"start":744,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":175,"start":102,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":550,"start":544,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":937,"start":936,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":506,"start":417,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":745,"start":739,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":63},{"feature_index":2,"overlap_bases":2}],"query_bed":[323,387],"query_length":64,"union_overlap_bases":64},"family":"overlapping_blocks","fingerprint":"0d0a4c2cfc0a0f0ee6ca6fa36bd86c11682d8ff006292ce4683a8d2d2b501bb0","group_id":"0d0a4c2cfc0a0f0ee6ca6fa36bd86c11682d8ff006292ce4683a8d2d2b501bb0","id":"INTERVALS-0004572","index":4572,"input":{"contigs":{"synthetic_A":911,"synthetic_B":1372},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":326,"start":320,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":387,"start":324,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":390,"start":386,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":424,"start":318,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":498,"start":429,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":269,"start":204,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":118,"start":110,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":41,"start":7,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1333,"start":1249,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":387,"start":323,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":50},{"feature_index":2,"overlap_bases":2}],"query_bed":[323,374],"query_length":51,"union_overlap_bases":51},"family":"overlapping_blocks","fingerprint":"be10d02c060145bc6f75a7b6134511d30072c99547edee23c49fe8516673d211","group_id":"be10d02c060145bc6f75a7b6134511d30072c99547edee23c49fe8516673d211","id":"INTERVALS-0004577","index":4577,"input":{"contigs":{"synthetic_A":1674,"synthetic_B":1437},"features":[{"basis":"one_closed","contig":"synthetic_B","end":326,"start":321,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":374,"start":324,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":377,"start":372,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":743,"start":650,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":489,"start":442,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":162,"start":134,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":402,"start":327,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1540,"start":1526,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":374,"start":323,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18}],"query_bed":[367,385],"query_length":18,"union_overlap_bases":18},"family":"coordinate_conversion","fingerprint":"3a4afb82b9fee01c7621f4903fd9e80a2028f9f5a1911d4cfd012c378b3994a1","group_id":"3a4afb82b9fee01c7621f4903fd9e80a2028f9f5a1911d4cfd012c378b3994a1","id":"INTERVALS-0004579","index":4579,"input":{"contigs":{"synthetic_A":935,"synthetic_B":736},"features":[{"basis":"one_closed","contig":"synthetic_A","end":385,"start":368,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":526,"start":492,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":599,"start":540,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":367,"start":262,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":727,"start":698,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":532,"start":469,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":302,"start":283,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":78,"start":27,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":573,"start":457,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":280,"start":233,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":469,"start":431,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":385,"start":368,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":41},{"feature_index":1,"overlap_bases":39},{"feature_index":2,"overlap_bases":41}],"query_bed":[106,147],"query_length":41,"union_overlap_bases":41},"family":"nested","fingerprint":"434ff304f43bfbbc4dc2cfef37ea2117689eb060abba815a957642ad76984ce3","group_id":"434ff304f43bfbbc4dc2cfef37ea2117689eb060abba815a957642ad76984ce3","id":"INTERVALS-0004586","index":4586,"input":{"contigs":{"synthetic_A":642,"synthetic_B":1607},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":152,"start":101,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":146,"start":108,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":164,"start":75,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1140,"start":1122,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":429,"start":346,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":147,"start":107,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":43},{"feature_index":1,"overlap_bases":41},{"feature_index":7,"overlap_bases":43}],"query_bed":[764,807],"query_length":43,"union_overlap_bases":43},"family":"nested","fingerprint":"69682354a4fab6b08fbf7e4fcf6899d9b66a7d6f11ae43be6e26af1db5835434","group_id":"69682354a4fab6b08fbf7e4fcf6899d9b66a7d6f11ae43be6e26af1db5835434","id":"INTERVALS-0004591","index":4591,"input":{"contigs":{"synthetic_A":1494,"synthetic_B":1548},"features":[{"basis":"one_closed","contig":"synthetic_A","end":812,"start":760,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":806,"start":766,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":248,"start":186,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1153,"start":1069,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":330,"start":314,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1310,"start":1202,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":687,"start":609,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":828,"start":709,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":351,"start":312,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":147,"start":104,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":807,"start":764,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":78},{"feature_index":1,"overlap_bases":76},{"feature_index":5,"overlap_bases":4}],"query_bed":[231,309],"query_length":78,"union_overlap_bases":78},"family":"nested","fingerprint":"6b3068f48ee3f95575b5adaacf827542a886ad36b9a0a01c00e5ef9399b44506","group_id":"6b3068f48ee3f95575b5adaacf827542a886ad36b9a0a01c00e5ef9399b44506","id":"INTERVALS-0004606","index":4606,"input":{"contigs":{"synthetic_A":948,"synthetic_B":1624},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":314,"start":226,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":308,"start":233,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1089,"start":1030,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":106,"start":78,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":491,"start":417,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":235,"start":192,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":408,"start":382,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":341,"start":315,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":527,"start":455,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":795,"start":690,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":309,"start":232,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":30},{"feature_index":2,"overlap_bases":2},{"feature_index":4,"overlap_bases":31}],"query_bed":[253,284],"query_length":31,"union_overlap_bases":31},"family":"overlapping_blocks","fingerprint":"073dea7e248a449ff02b9d2dd935a78651df25534e27bd5bc1d960855194f536","group_id":"073dea7e248a449ff02b9d2dd935a78651df25534e27bd5bc1d960855194f536","id":"INTERVALS-0004612","index":4612,"input":{"contigs":{"synthetic_A":684,"synthetic_B":1057},"features":[{"basis":"one_closed","contig":"synthetic_B","end":256,"start":251,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":284,"start":255,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":287,"start":282,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":69,"start":23,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":323,"start":248,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":222,"start":194,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":592,"start":586,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":284,"start":254,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1234,1261],"query_length":27,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"01ceb2daf91c050675c5d7a4cc1e8f0596d3ab2f8c73ad4ade2a7ce09ce6198d","group_id":"01ceb2daf91c050675c5d7a4cc1e8f0596d3ab2f8c73ad4ade2a7ce09ce6198d","id":"INTERVALS-0004620","index":4620,"input":{"contigs":{"synthetic_A":866,"synthetic_B":1465},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1234,"start":1218,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1300,"start":1262,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":635,"start":546,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":233,"start":155,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":609,"start":590,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":656,"start":656,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1261,"start":1235,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":59},{"feature_index":1,"overlap_bases":57}],"query_bed":[244,303],"query_length":59,"union_overlap_bases":59},"family":"nested","fingerprint":"f27118b873a9aa9ae797900718f1694bbd535bea0d0e04b6359375e2e1fa110e","group_id":"f27118b873a9aa9ae797900718f1694bbd535bea0d0e04b6359375e2e1fa110e","id":"INTERVALS-0004631","index":4631,"input":{"contigs":{"synthetic_A":1492,"synthetic_B":1644},"features":[{"basis":"one_closed","contig":"synthetic_A","end":308,"start":240,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":302,"start":245,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1136,"start":1095,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1113,"start":1061,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1251,"start":1135,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":964,"start":862,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":892,"start":818,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1094,"start":1073,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":149,"start":48,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":123,"start":9,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":390,"start":369,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":303,"start":245,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":19},{"feature_index":2,"overlap_bases":2}],"query_bed":[23,43],"query_length":20,"union_overlap_bases":20},"family":"overlapping_blocks","fingerprint":"32e47ed6409a59324043b41058f0029d0246160cad2f5a95afd78886667f5776","group_id":"32e47ed6409a59324043b41058f0029d0246160cad2f5a95afd78886667f5776","id":"INTERVALS-0004637","index":4637,"input":{"contigs":{"synthetic_A":849,"synthetic_B":657},"features":[{"basis":"one_closed","contig":"synthetic_B","end":26,"start":21,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":43,"start":25,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":46,"start":41,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":363,"start":348,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":80,"start":78,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":596,"start":527,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":43,"start":23,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":22},{"feature_index":1,"overlap_bases":20}],"query_bed":[154,176],"query_length":22,"union_overlap_bases":22},"family":"nested","fingerprint":"b1882b2055aabe30617a96f024a6a673d315bad62533f6e54e6b22d56af4133e","group_id":"b1882b2055aabe30617a96f024a6a673d315bad62533f6e54e6b22d56af4133e","id":"INTERVALS-0004651","index":4651,"input":{"contigs":{"synthetic_A":1316,"synthetic_B":1717},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":181,"start":149,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":175,"start":155,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1296,"start":1184,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":773,"start":664,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":978,"start":946,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":920,"start":811,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":943,"start":915,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":392,"start":357,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":137,"start":25,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1572,"start":1543,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":637,"start":597,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1230,"start":1111,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":176,"start":155,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":78}],"query_bed":[159,237],"query_length":78,"union_overlap_bases":78},"family":"coordinate_conversion","fingerprint":"1deebb901840f88dae1fb50878ca01a027257b6df2d880e106c40cb4f28b68ee","group_id":"1deebb901840f88dae1fb50878ca01a027257b6df2d880e106c40cb4f28b68ee","id":"INTERVALS-0004689","index":4689,"input":{"contigs":{"synthetic_A":734,"synthetic_B":1314},"features":[{"basis":"one_closed","contig":"synthetic_B","end":237,"start":160,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":409,"start":398,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":519,"start":502,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":259,"start":145,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1220,"start":1122,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":168,"start":70,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":610,"start":541,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":359,"start":255,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":339,"start":258,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":388,"start":270,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":671,"start":606,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":237,"start":160,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[895,919],"query_length":24,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"2441fe12fb9f2e256758a5495b0eb919dd48ff25863ceab981cdd1f55a5a5a66","group_id":"2441fe12fb9f2e256758a5495b0eb919dd48ff25863ceab981cdd1f55a5a5a66","id":"INTERVALS-0004695","index":4695,"input":{"contigs":{"synthetic_A":1190,"synthetic_B":1552},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":895,"start":891,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":921,"start":920,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":72,"start":7,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":283,"start":186,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":662,"start":563,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1067,"start":1030,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":370,"start":365,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1109,"start":1004,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":919,"start":896,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":74},{"feature_index":1,"overlap_bases":72}],"query_bed":[116,190],"query_length":74,"union_overlap_bases":74},"family":"nested","fingerprint":"085b7fc03826bead85576ccfcfe4269b837068e51b7d23d2f97fbbc890be7adc","group_id":"085b7fc03826bead85576ccfcfe4269b837068e51b7d23d2f97fbbc890be7adc","id":"INTERVALS-0004711","index":4711,"input":{"contigs":{"synthetic_A":629,"synthetic_B":1090},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":195,"start":111,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":189,"start":118,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":654,"start":562,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":364,"start":347,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":582,"start":488,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":561,"start":454,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":166,"start":101,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":376,"start":315,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":808,"start":781,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":429,"start":322,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":59,"start":55,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":190,"start":117,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":11},{"feature_index":2,"overlap_bases":2}],"query_bed":[365,377],"query_length":12,"union_overlap_bases":12},"family":"overlapping_blocks","fingerprint":"19338428f8dc26b813651968b517f399b77c65621676c9fb6110fdd3bcffa094","group_id":"19338428f8dc26b813651968b517f399b77c65621676c9fb6110fdd3bcffa094","id":"INTERVALS-0004722","index":4722,"input":{"contigs":{"synthetic_A":1667,"synthetic_B":1344},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":368,"start":362,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":377,"start":366,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":380,"start":375,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":171,"start":134,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1203,"start":1159,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1115,"start":1096,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":445,"start":386,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":909,"start":870,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":241,"start":189,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":84,"start":32,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":377,"start":365,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":23}],"query_bed":[207,230],"query_length":23,"union_overlap_bases":23},"family":"coordinate_conversion","fingerprint":"2cb974bc58e478c81f488a736ff108ba69379c4a0a70fce16177d76800af1c0f","group_id":"2cb974bc58e478c81f488a736ff108ba69379c4a0a70fce16177d76800af1c0f","id":"INTERVALS-0004724","index":4724,"input":{"contigs":{"synthetic_A":1103,"synthetic_B":886},"features":[{"basis":"one_closed","contig":"synthetic_B","end":230,"start":208,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":207,"start":157,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":419,"start":329,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":343,"start":258,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":595,"start":586,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":89,"start":34,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":230,"start":208,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":53}],"query_bed":[301,354],"query_length":53,"union_overlap_bases":53},"family":"stranded","fingerprint":"f54f4c806debd55b230d8d346e9ac98d9982153232c8acbba1fb62d65428acf1","group_id":"f54f4c806debd55b230d8d346e9ac98d9982153232c8acbba1fb62d65428acf1","id":"INTERVALS-0004728","index":4728,"input":{"contigs":{"synthetic_A":789,"synthetic_B":1339},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":354,"start":301,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":354,"start":301,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":205,"start":86,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1031,"start":946,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":396,"start":340,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":643,"start":623,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":548,"start":463,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1112,"start":993,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1137,"start":1033,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":354,"start":302,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":9}],"query_bed":[525,534],"query_length":9,"union_overlap_bases":9},"family":"coordinate_conversion","fingerprint":"acd36cd400191dc0688b625debfdd18fba8d506ac15f43a671738472387b931f","group_id":"acd36cd400191dc0688b625debfdd18fba8d506ac15f43a671738472387b931f","id":"INTERVALS-0004739","index":4739,"input":{"contigs":{"synthetic_A":1349,"synthetic_B":1559},"features":[{"basis":"one_closed","contig":"synthetic_A","end":534,"start":526,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":295,"start":223,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1099,"start":1091,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":970,"start":882,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":927,"start":909,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1198,"start":1175,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1154,"start":1150,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":418,"start":360,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":620,"start":504,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":534,"start":526,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":43},{"feature_index":2,"overlap_bases":2},{"feature_index":3,"overlap_bases":44}],"query_bed":[814,858],"query_length":44,"union_overlap_bases":44},"family":"overlapping_blocks","fingerprint":"4d02b83c37833bd0c327503b5541653509f125738e89e5b9f8860af269ec9f65","group_id":"4d02b83c37833bd0c327503b5541653509f125738e89e5b9f8860af269ec9f65","id":"INTERVALS-0004757","index":4757,"input":{"contigs":{"synthetic_A":711,"synthetic_B":1796},"features":[{"basis":"one_closed","contig":"synthetic_B","end":817,"start":812,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":858,"start":815,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":861,"start":857,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":864,"start":778,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":416,"start":403,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1526,"start":1418,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":147,"start":125,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":187,"start":139,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":90,"start":16,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":268,"start":189,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":978,"start":874,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":798,"start":786,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":858,"start":815,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":77},{"feature_index":1,"overlap_bases":75},{"feature_index":8,"overlap_bases":1}],"query_bed":[52,129],"query_length":77,"union_overlap_bases":77},"family":"nested","fingerprint":"5e0f28feaceeb9857d5799bda368cf456b78134b1bb191f25cfa6065c0b85ef5","group_id":"5e0f28feaceeb9857d5799bda368cf456b78134b1bb191f25cfa6065c0b85ef5","id":"INTERVALS-0004766","index":4766,"input":{"contigs":{"synthetic_A":1076,"synthetic_B":1450},"features":[{"basis":"one_closed","contig":"synthetic_A","end":134,"start":48,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":128,"start":54,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1257,"start":1199,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":418,"start":316,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":236,"start":157,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":966,"start":904,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":144,"start":103,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":155,"start":142,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":213,"start":129,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":668,"start":577,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":129,"start":53,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":21},{"feature_index":1,"overlap_bases":19}],"query_bed":[186,207],"query_length":21,"union_overlap_bases":21},"family":"nested","fingerprint":"ef1757409ab0d248611280687149508861de85389b296e5088b4dfc22b3aea50","group_id":"ef1757409ab0d248611280687149508861de85389b296e5088b4dfc22b3aea50","id":"INTERVALS-0004781","index":4781,"input":{"contigs":{"synthetic_A":1777,"synthetic_B":1022},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":212,"start":181,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":206,"start":188,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":546,"start":473,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":745,"start":632,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1028,"start":909,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":274,"start":273,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":207,"start":186,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":11},{"feature_index":4,"overlap_bases":11}],"query_bed":[554,565],"query_length":11,"union_overlap_bases":11},"family":"coordinate_conversion","fingerprint":"3fa364202d956ceb7b8376697473f3a72c34bac9720ad979fd5119bdcdc99799","group_id":"3fa364202d956ceb7b8376697473f3a72c34bac9720ad979fd5119bdcdc99799","id":"INTERVALS-0004784","index":4784,"input":{"contigs":{"synthetic_A":1595,"synthetic_B":1653},"features":[{"basis":"one_closed","contig":"synthetic_B","end":565,"start":555,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":267,"start":167,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":90,"start":46,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1556,"start":1460,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":581,"start":526,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":334,"start":263,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":654,"start":568,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1544,"start":1452,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":531,"start":500,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":565,"start":555,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":65},{"feature_index":2,"overlap_bases":2}],"query_bed":[480,546],"query_length":66,"union_overlap_bases":66},"family":"overlapping_blocks","fingerprint":"419ee15a10d9f58e28cc9316f29d2ec1526cfa54c290cb5869234b62fcfb774c","group_id":"419ee15a10d9f58e28cc9316f29d2ec1526cfa54c290cb5869234b62fcfb774c","id":"INTERVALS-0004787","index":4787,"input":{"contigs":{"synthetic_A":720,"synthetic_B":1462},"features":[{"basis":"one_closed","contig":"synthetic_B","end":483,"start":478,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":546,"start":482,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":549,"start":545,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":355,"start":305,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1116,"start":1016,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":234,"start":222,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":900,"start":842,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":529,"start":478,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":546,"start":481,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":34},{"feature_index":3,"overlap_bases":7}],"query_bed":[1012,1046],"query_length":34,"union_overlap_bases":34},"family":"stranded","fingerprint":"d6a35baa9a9dd0b9ea065bb35036a69533b7724ff0ff54010344f1d29590997a","group_id":"d6a35baa9a9dd0b9ea065bb35036a69533b7724ff0ff54010344f1d29590997a","id":"INTERVALS-0004788","index":4788,"input":{"contigs":{"synthetic_A":652,"synthetic_B":1359},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1046,"start":1013,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1046,"start":1013,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":232,"start":218,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1019,"start":947,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":639,"start":532,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":989,"start":920,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1046,"start":1013,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":67},{"feature_index":1,"overlap_bases":65},{"feature_index":3,"overlap_bases":2}],"query_bed":[1365,1432],"query_length":67,"union_overlap_bases":67},"family":"nested","fingerprint":"0db5aac2df08a6ea87d54597dabfcb5b3ff26f1a2c5913cca0f3fe926b06cdf3","group_id":"0db5aac2df08a6ea87d54597dabfcb5b3ff26f1a2c5913cca0f3fe926b06cdf3","id":"INTERVALS-0004791","index":4791,"input":{"contigs":{"synthetic_A":1551,"synthetic_B":1693},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1437,"start":1361,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1431,"start":1367,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1228,"start":1143,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1406,"start":1405,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1280,"start":1223,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":465,"start":383,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":699,"start":688,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":500,"start":449,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":923,"start":822,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1432,"start":1366,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":13},{"feature_index":2,"overlap_bases":2}],"query_bed":[833,847],"query_length":14,"union_overlap_bases":14},"family":"overlapping_blocks","fingerprint":"1067df568b3e1fa38a0cd9fc1bcd09f7f84685557a2d3c7e9514f20fc364ad66","group_id":"1067df568b3e1fa38a0cd9fc1bcd09f7f84685557a2d3c7e9514f20fc364ad66","id":"INTERVALS-0004797","index":4797,"input":{"contigs":{"synthetic_A":1335,"synthetic_B":1389},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":836,"start":830,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":847,"start":835,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":850,"start":846,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1093,"start":1074,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1093,"start":1009,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1092,"start":998,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":420,"start":305,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1254,"start":1187,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":365,"start":357,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":530,"start":527,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":341,"start":306,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":847,"start":834,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":38}],"query_bed":[161,199],"query_length":38,"union_overlap_bases":38},"family":"coordinate_conversion","fingerprint":"a814edda0a8979b0631f657d864fd5203adb4ecb59420b0eaa8df1b0886eaead","group_id":"a814edda0a8979b0631f657d864fd5203adb4ecb59420b0eaa8df1b0886eaead","id":"INTERVALS-0004809","index":4809,"input":{"contigs":{"synthetic_A":1555,"synthetic_B":676},"features":[{"basis":"one_closed","contig":"synthetic_B","end":199,"start":162,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":369,"start":352,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":543,"start":484,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":919,"start":817,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1337,"start":1306,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":513,"start":467,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":254,"start":227,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":383,"start":312,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":551,"start":508,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1080,"start":967,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":389,"start":303,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":199,"start":162,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":35}],"query_bed":[307,342],"query_length":35,"union_overlap_bases":35},"family":"stranded","fingerprint":"dfcae126656002383f084e3c1144b7d455a9376188b3ec403c09846f8a1fb045","group_id":"dfcae126656002383f084e3c1144b7d455a9376188b3ec403c09846f8a1fb045","id":"INTERVALS-0004813","index":4813,"input":{"contigs":{"synthetic_A":1342,"synthetic_B":1374},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":342,"start":307,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":342,"start":307,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":457,"start":378,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":404,"start":375,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":875,"start":849,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":311,"start":302,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":505,"start":492,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":671,"start":581,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":364,"start":274,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":769,"start":659,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":282,"start":191,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":342,"start":308,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":21},{"feature_index":2,"overlap_bases":2},{"feature_index":3,"overlap_bases":11}],"query_bed":[323,345],"query_length":22,"union_overlap_bases":22},"family":"overlapping_blocks","fingerprint":"58c3cbacec46b1cf7dd4ccd9f9fc34a323865492434796a14f883ef6c78ef882","group_id":"58c3cbacec46b1cf7dd4ccd9f9fc34a323865492434796a14f883ef6c78ef882","id":"INTERVALS-0004817","index":4817,"input":{"contigs":{"synthetic_A":724,"synthetic_B":1621},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":326,"start":320,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":345,"start":324,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":348,"start":344,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":446,"start":335,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1092,"start":1012,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":525,"start":421,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":432,"start":405,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1213,"start":1198,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1351,"start":1306,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":271,"start":220,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":605,"start":511,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":345,"start":323,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":54},{"feature_index":2,"overlap_bases":2}],"query_bed":[319,374],"query_length":55,"union_overlap_bases":55},"family":"overlapping_blocks","fingerprint":"15bcd358eecdb59cf64883f765ba5f0104fc502f5c20a71335335e2ea4013b4c","group_id":"15bcd358eecdb59cf64883f765ba5f0104fc502f5c20a71335335e2ea4013b4c","id":"INTERVALS-0004827","index":4827,"input":{"contigs":{"synthetic_A":1217,"synthetic_B":679},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":322,"start":316,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":374,"start":320,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":377,"start":372,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":892,"start":890,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":87,"start":14,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":159,"start":111,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":85,"start":24,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":168,"start":113,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":106,"start":88,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":611,"start":535,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":374,"start":319,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":12}],"query_bed":[677,689],"query_length":12,"union_overlap_bases":12},"family":"coordinate_conversion","fingerprint":"9676fa145cc30037fc5c39445a6583d218c319da9e363627461af7e12d395107","group_id":"9676fa145cc30037fc5c39445a6583d218c319da9e363627461af7e12d395107","id":"INTERVALS-0004829","index":4829,"input":{"contigs":{"synthetic_A":1211,"synthetic_B":928},"features":[{"basis":"one_closed","contig":"synthetic_B","end":689,"start":678,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":284,"start":262,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1004,"start":938,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":792,"start":697,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":96,"start":56,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":230,"start":151,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1117,"start":1059,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":689,"start":678,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":7,"overlap_bases":52}],"query_bed":[321,388],"query_length":67,"union_overlap_bases":52},"family":"touching_boundary","fingerprint":"0190761e26323215585245332b2b0c33f23aafd4e47ab4524240e1fa76dde3b2","group_id":"0190761e26323215585245332b2b0c33f23aafd4e47ab4524240e1fa76dde3b2","id":"INTERVALS-0004840","index":4840,"input":{"contigs":{"synthetic_A":1673,"synthetic_B":901},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":321,"start":312,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":403,"start":389,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":270,"start":263,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":281,"start":273,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":494,"start":489,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":706,"start":661,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":128,"start":45,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":377,"start":326,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1238,"start":1143,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1307,"start":1280,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":51,"start":42,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":509,"start":436,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":388,"start":322,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":10},{"feature_index":2,"overlap_bases":2}],"query_bed":[548,559],"query_length":11,"union_overlap_bases":11},"family":"overlapping_blocks","fingerprint":"0d7aa93628190875b8f9e9abd72765b78b316d959283a326d8b6473226de50d0","group_id":"0d7aa93628190875b8f9e9abd72765b78b316d959283a326d8b6473226de50d0","id":"INTERVALS-0004857","index":4857,"input":{"contigs":{"synthetic_A":891,"synthetic_B":1669},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":551,"start":545,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":559,"start":549,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":562,"start":557,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":906,"start":850,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":939,"start":865,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":630,"start":614,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1375,"start":1262,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":98,"start":59,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1312,"start":1238,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":698,"start":627,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":257,"start":152,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":559,"start":548,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":40},{"feature_index":2,"overlap_bases":2}],"query_bed":[244,285],"query_length":41,"union_overlap_bases":41},"family":"overlapping_blocks","fingerprint":"85d7ee34434c101dd587236e92ec4abf60d0ce81e4590ff28a91ddd330443f1e","group_id":"85d7ee34434c101dd587236e92ec4abf60d0ce81e4590ff28a91ddd330443f1e","id":"INTERVALS-0004862","index":4862,"input":{"contigs":{"synthetic_A":642,"synthetic_B":1784},"features":[{"basis":"one_closed","contig":"synthetic_B","end":247,"start":242,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":285,"start":246,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":288,"start":284,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":70,"start":21,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":107,"start":8,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":228,"start":187,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1204,"start":1168,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":273,"start":194,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":900,"start":856,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":285,"start":245,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56}],"query_bed":[147,203],"query_length":56,"union_overlap_bases":56},"family":"stranded","fingerprint":"4f73a5f4b3e001877cc9d80fd5c4230ab774e480f1f1a4a92ac18f7e2c621e6f","group_id":"4f73a5f4b3e001877cc9d80fd5c4230ab774e480f1f1a4a92ac18f7e2c621e6f","id":"INTERVALS-0004868","index":4868,"input":{"contigs":{"synthetic_A":760,"synthetic_B":1118},"features":[{"basis":"one_closed","contig":"synthetic_A","end":203,"start":148,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":203,"start":148,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":634,"start":546,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":176,"start":107,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":74,"start":8,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":162,"start":68,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":608,"start":522,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":203,"start":147,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":34},{"feature_index":2,"overlap_bases":7}],"query_bed":[201,235],"query_length":34,"union_overlap_bases":34},"family":"stranded","fingerprint":"5e252852b6458e43d15961a8d5336728945d2a0440038eb94810c8eaf156a563","group_id":"5e252852b6458e43d15961a8d5336728945d2a0440038eb94810c8eaf156a563","id":"INTERVALS-0004873","index":4873,"input":{"contigs":{"synthetic_A":1423,"synthetic_B":659},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":235,"start":201,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":235,"start":202,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":223,"start":216,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":277,"start":270,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":618,"start":521,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1067,"start":982,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":358,"start":283,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":235,"start":201,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[564,604],"query_length":40,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"7e092d126a1cf8dd896df5f6aa9394819c9300d8b6c61a1bbaadf5bd42cc35d8","group_id":"7e092d126a1cf8dd896df5f6aa9394819c9300d8b6c61a1bbaadf5bd42cc35d8","id":"INTERVALS-0004875","index":4875,"input":{"contigs":{"synthetic_A":1002,"synthetic_B":1661},"features":[{"basis":"one_closed","contig":"synthetic_B","end":564,"start":546,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":630,"start":605,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":67,"start":16,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":489,"start":375,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":673,"start":586,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":604,"start":564,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":6}],"query_bed":[591,597],"query_length":6,"union_overlap_bases":6},"family":"coordinate_conversion","fingerprint":"e60f4fcc038e2e43f01b5eed2eb3dadfb56e377eeeb133b5b41fbaa594e3c33c","group_id":"e60f4fcc038e2e43f01b5eed2eb3dadfb56e377eeeb133b5b41fbaa594e3c33c","id":"INTERVALS-0004889","index":4889,"input":{"contigs":{"synthetic_A":1368,"synthetic_B":985},"features":[{"basis":"one_closed","contig":"synthetic_A","end":597,"start":592,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":515,"start":489,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":112,"start":88,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":98,"start":32,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":682,"start":600,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":651,"start":640,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":239,"start":136,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":816,"start":802,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":297,"start":203,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":516,"start":504,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":597,"start":592,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[358,417],"query_length":59,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"6100f3c6c3cf7c992af3e6a38f3d1070ff7d6be3078c91a281578ec3c94d2c89","group_id":"6100f3c6c3cf7c992af3e6a38f3d1070ff7d6be3078c91a281578ec3c94d2c89","id":"INTERVALS-0004890","index":4890,"input":{"contigs":{"synthetic_A":1330,"synthetic_B":1235},"features":[{"basis":"one_closed","contig":"synthetic_B","end":358,"start":339,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":427,"start":417,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":897,"start":788,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":848,"start":750,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1018,"start":928,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1085,"start":1056,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":512,"start":492,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":337,"start":249,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1190,"start":1168,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":695,"start":609,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":417,"start":359,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[712,739],"query_length":27,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"3a345eb837f68ad03890632a76c992465ea97fdd08e70b8bdb0c780122431ea0","group_id":"3a345eb837f68ad03890632a76c992465ea97fdd08e70b8bdb0c780122431ea0","id":"INTERVALS-0004895","index":4895,"input":{"contigs":{"synthetic_A":991,"synthetic_B":1555},"features":[{"basis":"one_closed","contig":"synthetic_B","end":712,"start":709,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":740,"start":739,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":901,"start":817,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":795,"start":686,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1176,"start":1155,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":739,"start":713,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":14}],"query_bed":[182,196],"query_length":14,"union_overlap_bases":14},"family":"coordinate_conversion","fingerprint":"46883e463705f1644adaea163410215c45b121e509ada2a3adcf2dd14984f613","group_id":"46883e463705f1644adaea163410215c45b121e509ada2a3adcf2dd14984f613","id":"INTERVALS-0004904","index":4904,"input":{"contigs":{"synthetic_A":1096,"synthetic_B":1243},"features":[{"basis":"one_closed","contig":"synthetic_A","end":196,"start":183,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":635,"start":621,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":747,"start":698,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":272,"start":225,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":449,"start":415,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":356,"start":333,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":629,"start":627,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":196,"start":183,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":55}],"query_bed":[613,668],"query_length":55,"union_overlap_bases":55},"family":"stranded","fingerprint":"7b34eccacfd6026487cb4f6e3e71852d8fe2c08938c90d73f3c4f01be86c3771","group_id":"7b34eccacfd6026487cb4f6e3e71852d8fe2c08938c90d73f3c4f01be86c3771","id":"INTERVALS-0004908","index":4908,"input":{"contigs":{"synthetic_A":1194,"synthetic_B":819},"features":[{"basis":"one_closed","contig":"synthetic_B","end":668,"start":614,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":668,"start":614,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":526,"start":483,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":522,"start":408,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":997,"start":920,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":703,"start":684,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":506,"start":461,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":632,"start":518,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":775,"start":674,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":144,"start":62,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1069,"start":1005,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":668,"start":614,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[44,106],"query_length":62,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"556abf4ceeaf61cea2c8baa48febd82e61de507bb33e2ec5e3d30043f9a5a152","group_id":"556abf4ceeaf61cea2c8baa48febd82e61de507bb33e2ec5e3d30043f9a5a152","id":"INTERVALS-0004910","index":4910,"input":{"contigs":{"synthetic_A":1490,"synthetic_B":1481},"features":[{"basis":"one_closed","contig":"synthetic_A","end":44,"start":43,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":125,"start":106,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1068,"start":997,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":469,"start":464,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":949,"start":859,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":548,"start":518,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":768,"start":729,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":222,"start":118,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1287,"start":1215,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1204,"start":1154,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":106,"start":44,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":47}],"query_bed":[380,427],"query_length":47,"union_overlap_bases":47},"family":"coordinate_conversion","fingerprint":"9c83e890df7ec4d4ffd7fdf79a3b866cce0f42a615fcee5d77908765a84b3e40","group_id":"9c83e890df7ec4d4ffd7fdf79a3b866cce0f42a615fcee5d77908765a84b3e40","id":"INTERVALS-0004914","index":4914,"input":{"contigs":{"synthetic_A":1011,"synthetic_B":1194},"features":[{"basis":"one_closed","contig":"synthetic_A","end":427,"start":381,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":115,"start":11,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1075,"start":1026,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":248,"start":139,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":62,"start":15,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":427,"start":381,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":24}],"query_bed":[513,537],"query_length":24,"union_overlap_bases":24},"family":"stranded","fingerprint":"73e057de04630bd5c663b1f5dcb53c62ccf757fbf6597e3fc105f374ae1cebda","group_id":"73e057de04630bd5c663b1f5dcb53c62ccf757fbf6597e3fc105f374ae1cebda","id":"INTERVALS-0004918","index":4918,"input":{"contigs":{"synthetic_A":796,"synthetic_B":1325},"features":[{"basis":"one_closed","contig":"synthetic_A","end":537,"start":514,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":537,"start":514,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":354,"start":336,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1031,"start":1020,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":213,"start":169,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":126,"start":92,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":741,"start":705,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":537,"start":514,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":20},{"feature_index":1,"overlap_bases":18}],"query_bed":[566,586],"query_length":20,"union_overlap_bases":20},"family":"nested","fingerprint":"98be8634402de2e0af4c7b52779e4cb1973b3e56bdb085c4da930e5533c1c3e4","group_id":"98be8634402de2e0af4c7b52779e4cb1973b3e56bdb085c4da930e5533c1c3e4","id":"INTERVALS-0004936","index":4936,"input":{"contigs":{"synthetic_A":1057,"synthetic_B":781},"features":[{"basis":"one_closed","contig":"synthetic_B","end":591,"start":562,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":585,"start":567,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":795,"start":734,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":74,"start":52,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":190,"start":95,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":282,"start":243,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":586,"start":567,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":59}],"query_bed":[1178,1237],"query_length":59,"union_overlap_bases":59},"family":"stranded","fingerprint":"da2ea1803bea82e7fd1baf47f6598173ce682c40fb7a4816d761cee0d426df41","group_id":"da2ea1803bea82e7fd1baf47f6598173ce682c40fb7a4816d761cee0d426df41","id":"INTERVALS-0004943","index":4943,"input":{"contigs":{"synthetic_A":1579,"synthetic_B":1121},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1237,"start":1178,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1237,"start":1179,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":184,"start":81,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":868,"start":802,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":116,"start":53,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":507,"start":406,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":924,"start":832,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":255,"start":254,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1237,"start":1179,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73},{"feature_index":4,"overlap_bases":22}],"query_bed":[239,312],"query_length":73,"union_overlap_bases":73},"family":"coordinate_conversion","fingerprint":"8b77406a4b1a23b5100c80d8f24512d655202b57417830a697ee7e954fdb7b0c","group_id":"8b77406a4b1a23b5100c80d8f24512d655202b57417830a697ee7e954fdb7b0c","id":"INTERVALS-0004949","index":4949,"input":{"contigs":{"synthetic_A":1274,"synthetic_B":1606},"features":[{"basis":"one_closed","contig":"synthetic_A","end":312,"start":240,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":428,"start":425,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":936,"start":901,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":522,"start":468,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":261,"start":153,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":312,"start":240,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":17},{"feature_index":7,"overlap_bases":17}],"query_bed":[1176,1193],"query_length":17,"union_overlap_bases":17},"family":"stranded","fingerprint":"39b89cce1b1d3ef0a9a09c33f402a4037121c366c2f1b458fcc2b6ebe712c45b","group_id":"39b89cce1b1d3ef0a9a09c33f402a4037121c366c2f1b458fcc2b6ebe712c45b","id":"INTERVALS-0004958","index":4958,"input":{"contigs":{"synthetic_A":1275,"synthetic_B":1402},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1193,"start":1176,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1193,"start":1176,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":115,"start":25,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":211,"start":161,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":630,"start":581,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":328,"start":295,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":962,"start":913,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1229,"start":1171,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":545,"start":507,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1129,"start":1107,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1193,"start":1177,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":23}],"query_bed":[1072,1095],"query_length":23,"union_overlap_bases":23},"family":"stranded","fingerprint":"ada53bf6d90eb61b275b2f4ac21f194605f93cd307e298af91d003e18dad9dbc","group_id":"ada53bf6d90eb61b275b2f4ac21f194605f93cd307e298af91d003e18dad9dbc","id":"INTERVALS-0004973","index":4973,"input":{"contigs":{"synthetic_A":1347,"synthetic_B":945},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1095,"start":1073,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1095,"start":1072,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":785,"start":766,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":611,"start":588,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":529,"start":440,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1095,"start":1073,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":24}],"query_bed":[540,564],"query_length":24,"union_overlap_bases":24},"family":"coordinate_conversion","fingerprint":"02e413043b3f1836ef0cb835ee56733437231eeab4b9c890eadacb3aeef7d686","group_id":"02e413043b3f1836ef0cb835ee56733437231eeab4b9c890eadacb3aeef7d686","id":"INTERVALS-0004974","index":4974,"input":{"contigs":{"synthetic_A":914,"synthetic_B":1457},"features":[{"basis":"one_closed","contig":"synthetic_A","end":564,"start":541,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":237,"start":185,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1392,"start":1309,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":494,"start":456,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":360,"start":278,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":740,"start":679,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1036,"start":960,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1168,"start":1089,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":164,"start":75,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":711,"start":618,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1132,"start":1065,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":564,"start":541,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":31},{"feature_index":1,"overlap_bases":29}],"query_bed":[319,350],"query_length":31,"union_overlap_bases":31},"family":"nested","fingerprint":"46a514f84d8f66e39acdd626b873bd44842d13042bfbf05c7e9d9a4290ef8128","group_id":"46a514f84d8f66e39acdd626b873bd44842d13042bfbf05c7e9d9a4290ef8128","id":"INTERVALS-0004976","index":4976,"input":{"contigs":{"synthetic_A":618,"synthetic_B":1056},"features":[{"basis":"one_closed","contig":"synthetic_A","end":355,"start":315,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":349,"start":320,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":475,"start":468,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":531,"start":494,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":875,"start":784,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":338,"start":280,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":881,"start":858,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":826,"start":749,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":178,"start":132,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":428,"start":371,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":115,"start":64,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":350,"start":320,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":75},{"feature_index":2,"overlap_bases":2}],"query_bed":[979,1055],"query_length":76,"union_overlap_bases":76},"family":"overlapping_blocks","fingerprint":"49e2bcc4679e0254b2b9b05d5a999e1ba38e76e4c227f058577cf5604b674c87","group_id":"49e2bcc4679e0254b2b9b05d5a999e1ba38e76e4c227f058577cf5604b674c87","id":"INTERVALS-0004977","index":4977,"input":{"contigs":{"synthetic_A":1584,"synthetic_B":1334},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":982,"start":976,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1055,"start":981,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1058,"start":1053,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1355,"start":1280,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1327,"start":1307,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":460,"start":443,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":822,"start":800,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":861,"start":760,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":889,"start":797,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1055,"start":980,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":72},{"feature_index":6,"overlap_bases":49}],"query_bed":[617,689],"query_length":72,"union_overlap_bases":72},"family":"stranded","fingerprint":"eac31c38510440813a94a9517d3f27fe42cd4520b96819936c8d39f52489f798","group_id":"eac31c38510440813a94a9517d3f27fe42cd4520b96819936c8d39f52489f798","id":"INTERVALS-0005008","index":5008,"input":{"contigs":{"synthetic_A":1444,"synthetic_B":1128},"features":[{"basis":"one_closed","contig":"synthetic_B","end":689,"start":618,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":689,"start":617,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1277,"start":1251,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":77,"start":70,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":285,"start":259,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1004,"start":976,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":706,"start":641,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":735,"start":730,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1292,"start":1229,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":895,"start":886,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":689,"start":618,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":20},{"feature_index":2,"overlap_bases":2},{"feature_index":7,"overlap_bases":21}],"query_bed":[621,642],"query_length":21,"union_overlap_bases":21},"family":"overlapping_blocks","fingerprint":"b97d905ea882c0bb6c9d45525248513df353b4c691c8ee93d4cd3a125fa3f7da","group_id":"b97d905ea882c0bb6c9d45525248513df353b4c691c8ee93d4cd3a125fa3f7da","id":"INTERVALS-0005022","index":5022,"input":{"contigs":{"synthetic_A":978,"synthetic_B":1665},"features":[{"basis":"one_closed","contig":"synthetic_A","end":624,"start":619,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":642,"start":622,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":645,"start":641,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":891,"start":805,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":521,"start":412,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":151,"start":64,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1493,"start":1408,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":682,"start":594,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1057,"start":966,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":218,"start":171,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":642,"start":622,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":18},{"feature_index":2,"overlap_bases":2}],"query_bed":[34,53],"query_length":19,"union_overlap_bases":19},"family":"overlapping_blocks","fingerprint":"0502115466480e5b23d634a9b87a599bf6e2e0270382fed1e9d3e69e401b82cf","group_id":"0502115466480e5b23d634a9b87a599bf6e2e0270382fed1e9d3e69e401b82cf","id":"INTERVALS-0005037","index":5037,"input":{"contigs":{"synthetic_A":684,"synthetic_B":734},"features":[{"basis":"one_closed","contig":"synthetic_B","end":37,"start":32,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":53,"start":35,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":56,"start":52,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":438,"start":350,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":124,"start":60,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":423,"start":358,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":373,"start":350,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":22,"start":19,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":433,"start":339,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":90,"start":86,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":53,"start":34,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":77}],"query_bed":[445,522],"query_length":77,"union_overlap_bases":77},"family":"stranded","fingerprint":"a7afe3405b0d749ae2a84730fc0b084441375de00a362238fb1859eff760f6dc","group_id":"a7afe3405b0d749ae2a84730fc0b084441375de00a362238fb1859eff760f6dc","id":"INTERVALS-0005053","index":5053,"input":{"contigs":{"synthetic_A":1392,"synthetic_B":1296},"features":[{"basis":"one_closed","contig":"synthetic_A","end":522,"start":446,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":522,"start":446,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":731,"start":715,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1128,"start":1048,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":136,"start":113,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":442,"start":418,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":771,"start":685,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":522,"start":445,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":7}],"query_bed":[1345,1352],"query_length":7,"union_overlap_bases":7},"family":"stranded","fingerprint":"7fee242a6b35383e0322aef4d10c5b010c44d809d6d65217f01413896abc8044","group_id":"7fee242a6b35383e0322aef4d10c5b010c44d809d6d65217f01413896abc8044","id":"INTERVALS-0005068","index":5068,"input":{"contigs":{"synthetic_A":1596,"synthetic_B":1088},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1352,"start":1346,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1352,"start":1346,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":968,"start":923,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":289,"start":202,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":689,"start":623,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":650,"start":574,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":684,"start":627,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":244,"start":144,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":716,"start":677,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":381,"start":325,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1360,"start":1350,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1489,"start":1426,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1352,"start":1346,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":39},{"feature_index":2,"overlap_bases":2}],"query_bed":[448,488],"query_length":40,"union_overlap_bases":40},"family":"overlapping_blocks","fingerprint":"80fa7df07e1ab4db92d3306875fa471760ea932998c912604f99c3e9046939c3","group_id":"80fa7df07e1ab4db92d3306875fa471760ea932998c912604f99c3e9046939c3","id":"INTERVALS-0005087","index":5087,"input":{"contigs":{"synthetic_A":1796,"synthetic_B":1740},"features":[{"basis":"one_closed","contig":"synthetic_B","end":451,"start":446,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":488,"start":449,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":491,"start":486,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1021,"start":915,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1316,"start":1219,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":193,"start":137,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1435,"start":1380,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1577,"start":1527,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":488,"start":449,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[85,130],"query_length":45,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"593aad58aaed8f2aaa9fe7851bc902c1e6e469ef01a642968d876aa122dee5ff","group_id":"593aad58aaed8f2aaa9fe7851bc902c1e6e469ef01a642968d876aa122dee5ff","id":"INTERVALS-0005090","index":5090,"input":{"contigs":{"synthetic_A":667,"synthetic_B":1671},"features":[{"basis":"one_closed","contig":"synthetic_A","end":85,"start":68,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":133,"start":131,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1441,"start":1333,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":542,"start":503,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":542,"start":428,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1333,"start":1252,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":130,"start":86,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[86,100],"query_length":14,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e32fb9904020ff0cc2b74913c59a46ca0f383d8b61617efd2a16d360cee4f07a","group_id":"e32fb9904020ff0cc2b74913c59a46ca0f383d8b61617efd2a16d360cee4f07a","id":"INTERVALS-0005120","index":5120,"input":{"contigs":{"synthetic_A":827,"synthetic_B":1619},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":86,"start":73,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":131,"start":101,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1107,"start":1064,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":412,"start":323,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":254,"start":144,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":243,"start":216,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":100,"start":87,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":8}],"query_bed":[1464,1472],"query_length":8,"union_overlap_bases":8},"family":"coordinate_conversion","fingerprint":"15d50d064fe6a4871604af2946fc4416a8b116e251611f545a59698b0f8d69b8","group_id":"15d50d064fe6a4871604af2946fc4416a8b116e251611f545a59698b0f8d69b8","id":"INTERVALS-0005124","index":5124,"input":{"contigs":{"synthetic_A":1752,"synthetic_B":1659},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1472,"start":1465,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1301,"start":1272,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":265,"start":152,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":496,"start":445,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":380,"start":345,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1182,"start":1180,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":495,"start":430,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":593,"start":521,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1472,"start":1465,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":10}],"query_bed":[125,135],"query_length":10,"union_overlap_bases":10},"family":"coordinate_conversion","fingerprint":"bc06c13869eac377997df0396045730e434909c4ad91f1ba143a705596de3ce7","group_id":"bc06c13869eac377997df0396045730e434909c4ad91f1ba143a705596de3ce7","id":"INTERVALS-0005139","index":5139,"input":{"contigs":{"synthetic_A":1148,"synthetic_B":832},"features":[{"basis":"one_closed","contig":"synthetic_B","end":135,"start":126,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":879,"start":812,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":739,"start":698,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":753,"start":689,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":442,"start":399,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":576,"start":500,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":504,"start":422,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":511,"start":427,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":281,"start":173,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":614,"start":497,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":488,"start":432,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":907,"start":870,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":135,"start":126,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":62}],"query_bed":[779,841],"query_length":62,"union_overlap_bases":62},"family":"stranded","fingerprint":"158ccbeaea3a367817a9b640bc993c6aa32ef40e7d82016b115f38583a98584d","group_id":"158ccbeaea3a367817a9b640bc993c6aa32ef40e7d82016b115f38583a98584d","id":"INTERVALS-0005143","index":5143,"input":{"contigs":{"synthetic_A":1783,"synthetic_B":1146},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":841,"start":779,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":841,"start":779,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":8,"start":2,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":53,"start":17,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1171,"start":1114,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":487,"start":455,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":727,"start":680,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":773,"start":765,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":524,"start":501,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":744,"start":723,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":841,"start":780,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":35},{"feature_index":2,"overlap_bases":2}],"query_bed":[464,500],"query_length":36,"union_overlap_bases":36},"family":"overlapping_blocks","fingerprint":"1cefc0f41a1d4d9b2726d19039a7f19ff9ef0deeebc7a969f15c346bfa5d807f","group_id":"1cefc0f41a1d4d9b2726d19039a7f19ff9ef0deeebc7a969f15c346bfa5d807f","id":"INTERVALS-0005167","index":5167,"input":{"contigs":{"synthetic_A":1040,"synthetic_B":1253},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":467,"start":461,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":500,"start":466,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":503,"start":499,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":93,"start":51,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":333,"start":226,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":253,"start":194,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":293,"start":243,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":434,"start":328,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":738,"start":705,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":943,"start":920,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":342,"start":282,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":804,"start":777,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":500,"start":464,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1213,1277],"query_length":64,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"d1ef385e17b08c60b308a5055d5580ebf4311b07f81a89317d4ab4e5fa121714","group_id":"d1ef385e17b08c60b308a5055d5580ebf4311b07f81a89317d4ab4e5fa121714","id":"INTERVALS-0005180","index":5180,"input":{"contigs":{"synthetic_A":1698,"synthetic_B":1566},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1213,"start":1212,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1289,"start":1277,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":246,"start":186,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1027,"start":1006,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":321,"start":306,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1324,"start":1284,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":424,"start":363,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":73,"start":32,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":177,"start":174,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1293,"start":1215,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1298,"start":1224,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":346,"start":326,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1277,"start":1213,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":67},{"feature_index":1,"overlap_bases":5}],"query_bed":[431,498],"query_length":67,"union_overlap_bases":67},"family":"coordinate_conversion","fingerprint":"d222c9b2c19b3aa115537ef679e421cafc5ae52145b7abc2e82affd1f7a7b131","group_id":"d222c9b2c19b3aa115537ef679e421cafc5ae52145b7abc2e82affd1f7a7b131","id":"INTERVALS-0005184","index":5184,"input":{"contigs":{"synthetic_A":674,"synthetic_B":1164},"features":[{"basis":"one_closed","contig":"synthetic_A","end":498,"start":432,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":525,"start":494,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":439,"start":377,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":284,"start":205,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":219,"start":103,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":498,"start":432,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":44}],"query_bed":[616,660],"query_length":44,"union_overlap_bases":44},"family":"coordinate_conversion","fingerprint":"4d3b5458c533f3f7c66812525f2bb4a227df2b49166bf9031139ed959287e03c","group_id":"4d3b5458c533f3f7c66812525f2bb4a227df2b49166bf9031139ed959287e03c","id":"INTERVALS-0005189","index":5189,"input":{"contigs":{"synthetic_A":1122,"synthetic_B":738},"features":[{"basis":"one_closed","contig":"synthetic_A","end":660,"start":617,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":354,"start":292,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":460,"start":438,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":63,"start":24,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":647,"start":587,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":231,"start":158,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":660,"start":617,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[136,206],"query_length":70,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"dfc485883b29e1e5ba1fde1797cbe5f7473619adaa8cb6f42cf0823ae4cce360","group_id":"dfc485883b29e1e5ba1fde1797cbe5f7473619adaa8cb6f42cf0823ae4cce360","id":"INTERVALS-0005190","index":5190,"input":{"contigs":{"synthetic_A":883,"synthetic_B":1292},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":136,"start":128,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":211,"start":207,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":619,"start":602,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":960,"start":890,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":473,"start":353,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1079,"start":1002,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":398,"start":298,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":206,"start":137,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":59},{"feature_index":2,"overlap_bases":2},{"feature_index":5,"overlap_bases":49}],"query_bed":[190,250],"query_length":60,"union_overlap_bases":60},"family":"overlapping_blocks","fingerprint":"991ac73cfae2ac9e5d4b5cb7f40620301f127523bafc9a41af9e9a6aa1db8fc0","group_id":"991ac73cfae2ac9e5d4b5cb7f40620301f127523bafc9a41af9e9a6aa1db8fc0","id":"INTERVALS-0005197","index":5197,"input":{"contigs":{"synthetic_A":803,"synthetic_B":957},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":193,"start":187,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":250,"start":191,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":253,"start":249,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":118,"start":49,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":687,"start":686,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":242,"start":194,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":510,"start":423,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":250,"start":191,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[174,219],"query_length":45,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"0d50305291e1de7f9a69ac7d3189595d8d7cea21171507da386dc84226a5efb0","group_id":"0d50305291e1de7f9a69ac7d3189595d8d7cea21171507da386dc84226a5efb0","id":"INTERVALS-0005205","index":5205,"input":{"contigs":{"synthetic_A":920,"synthetic_B":704},"features":[{"basis":"one_closed","contig":"synthetic_B","end":174,"start":170,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":231,"start":219,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":495,"start":449,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":705,"start":605,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":435,"start":409,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":162,"start":91,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":281,"start":241,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":782,"start":781,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":219,"start":174,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1076,1092],"query_length":16,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e815a51e496228be7bded38892cfee20dafba973595593d4f589836519ad18eb","group_id":"e815a51e496228be7bded38892cfee20dafba973595593d4f589836519ad18eb","id":"INTERVALS-0005215","index":5215,"input":{"contigs":{"synthetic_A":836,"synthetic_B":1413},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1076,"start":1064,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1102,"start":1092,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":263,"start":260,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":514,"start":453,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":571,"start":529,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":679,"start":589,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":519,"start":493,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1092,"start":1077,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":54},{"feature_index":1,"overlap_bases":52}],"query_bed":[420,474],"query_length":54,"union_overlap_bases":54},"family":"nested","fingerprint":"e4968c6e46b3f51f8916cb317b5a6fcfad11fd509d3c02bcedde192edce26e0c","group_id":"e4968c6e46b3f51f8916cb317b5a6fcfad11fd509d3c02bcedde192edce26e0c","id":"INTERVALS-0005251","index":5251,"input":{"contigs":{"synthetic_A":1131,"synthetic_B":1383},"features":[{"basis":"one_closed","contig":"synthetic_A","end":479,"start":416,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":473,"start":421,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":888,"start":828,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1355,"start":1258,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":380,"start":297,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1184,"start":1119,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":934,"start":883,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":961,"start":905,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":274,"start":170,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":474,"start":420,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":26}],"query_bed":[980,1006],"query_length":26,"union_overlap_bases":26},"family":"stranded","fingerprint":"07f91588c889f6664e6449b79937f7162654e6b4de9ea2bbf043799e77695e01","group_id":"07f91588c889f6664e6449b79937f7162654e6b4de9ea2bbf043799e77695e01","id":"INTERVALS-0005253","index":5253,"input":{"contigs":{"synthetic_A":1426,"synthetic_B":1449},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1006,"start":980,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1006,"start":981,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":452,"start":367,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":531,"start":480,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":384,"start":318,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1184,"start":1078,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":271,"start":152,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":223,"start":178,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":316,"start":200,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1288,"start":1228,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1006,"start":981,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[325,361],"query_length":36,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"5e184d3a6684f25fb85ffabf69adbbc8eee6da9880a0df3c2e11382e40aee631","group_id":"5e184d3a6684f25fb85ffabf69adbbc8eee6da9880a0df3c2e11382e40aee631","id":"INTERVALS-0005275","index":5275,"input":{"contigs":{"synthetic_A":1027,"synthetic_B":1506},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":325,"start":313,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":376,"start":361,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":164,"start":144,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1141,"start":1125,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":225,"start":159,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":361,"start":325,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[481,530],"query_length":49,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"c315dbe4a826f22cc22d361d3bbcc0d105265857b155fcfb83b5bf09a7ec5f13","group_id":"c315dbe4a826f22cc22d361d3bbcc0d105265857b155fcfb83b5bf09a7ec5f13","id":"INTERVALS-0005310","index":5310,"input":{"contigs":{"synthetic_A":1088,"synthetic_B":1538},"features":[{"basis":"one_closed","contig":"synthetic_A","end":481,"start":464,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":546,"start":530,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":672,"start":596,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":810,"start":748,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":113,"start":62,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":552,"start":551,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":99,"start":51,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":530,"start":481,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56}],"query_bed":[896,952],"query_length":56,"union_overlap_bases":56},"family":"coordinate_conversion","fingerprint":"f0e97710188646da8cdba4ae215f547bf5eb040785d965795fce3df3894e4a4a","group_id":"f0e97710188646da8cdba4ae215f547bf5eb040785d965795fce3df3894e4a4a","id":"INTERVALS-0005314","index":5314,"input":{"contigs":{"synthetic_A":1007,"synthetic_B":1473},"features":[{"basis":"one_closed","contig":"synthetic_B","end":952,"start":897,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":292,"start":290,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":682,"start":614,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1092,"start":1045,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1317,"start":1229,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":584,"start":538,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":952,"start":897,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":2,"overlap_bases":40}],"query_bed":[777,822],"query_length":45,"union_overlap_bases":40},"family":"touching_boundary","fingerprint":"9f4d34fa6c1fe3976e6cebe4a5116537c3e2a6038e53b404d4264eb57a7f6df0","group_id":"9f4d34fa6c1fe3976e6cebe4a5116537c3e2a6038e53b404d4264eb57a7f6df0","id":"INTERVALS-0005325","index":5325,"input":{"contigs":{"synthetic_A":696,"synthetic_B":1103},"features":[{"basis":"one_closed","contig":"synthetic_B","end":777,"start":776,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":845,"start":822,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":898,"start":782,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":145,"start":87,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":280,"start":275,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":704,"start":610,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":576,"start":502,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":552,"start":514,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":444,"start":406,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":752,"start":671,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":822,"start":777,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":5,"overlap_bases":14}],"query_bed":[30,90],"query_length":60,"union_overlap_bases":14},"family":"touching_boundary","fingerprint":"de46ed7ce759d0c36d6110e5a4125215103ea675e35ad91d3bfc7fe3a717ccbc","group_id":"de46ed7ce759d0c36d6110e5a4125215103ea675e35ad91d3bfc7fe3a717ccbc","id":"INTERVALS-0005335","index":5335,"input":{"contigs":{"synthetic_A":1269,"synthetic_B":1299},"features":[{"basis":"one_closed","contig":"synthetic_A","end":30,"start":22,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":107,"start":90,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":826,"start":807,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":453,"start":350,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":76,"start":73,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":44,"start":14,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":90,"start":30,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":45},{"feature_index":1,"overlap_bases":43}],"query_bed":[760,805],"query_length":45,"union_overlap_bases":45},"family":"nested","fingerprint":"e6e7e5443435c36d4cfcbf93307f2099c76cbf306a882bb4c4c37d6fcdefac2a","group_id":"e6e7e5443435c36d4cfcbf93307f2099c76cbf306a882bb4c4c37d6fcdefac2a","id":"INTERVALS-0005346","index":5346,"input":{"contigs":{"synthetic_A":1082,"synthetic_B":655},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":810,"start":755,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":804,"start":761,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":33,"start":15,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":537,"start":439,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":411,"start":397,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":805,"start":760,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32},{"feature_index":1,"overlap_bases":30},{"feature_index":5,"overlap_bases":25}],"query_bed":[1381,1413],"query_length":32,"union_overlap_bases":32},"family":"nested","fingerprint":"a013d31c468148c8d355fc56c1715b6ab1e041e8f9ff39b0e25e66d9b423ace0","group_id":"a013d31c468148c8d355fc56c1715b6ab1e041e8f9ff39b0e25e66d9b423ace0","id":"INTERVALS-0005361","index":5361,"input":{"contigs":{"synthetic_A":1451,"synthetic_B":1626},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1418,"start":1376,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1412,"start":1383,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":672,"start":652,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":430,"start":424,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":352,"start":344,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1406,"start":1337,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1413,"start":1381,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":7},{"feature_index":2,"overlap_bases":2}],"query_bed":[280,288],"query_length":8,"union_overlap_bases":8},"family":"overlapping_blocks","fingerprint":"18e970ea492928b167b71cfbb3783fd021dc7da36a83e9939a5aa7c972f6c586","group_id":"18e970ea492928b167b71cfbb3783fd021dc7da36a83e9939a5aa7c972f6c586","id":"INTERVALS-0005362","index":5362,"input":{"contigs":{"synthetic_A":1701,"synthetic_B":1333},"features":[{"basis":"one_closed","contig":"synthetic_B","end":283,"start":278,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":288,"start":282,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":291,"start":286,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":470,"start":381,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":260,"start":161,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":188,"start":186,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":426,"start":341,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1560,"start":1480,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1079,"start":971,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":856,"start":843,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":288,"start":281,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":47},{"feature_index":2,"overlap_bases":2}],"query_bed":[187,235],"query_length":48,"union_overlap_bases":48},"family":"overlapping_blocks","fingerprint":"74df97bc51db4f4746b780d0839c2270a83a609f3d8f5d789d7995a795a3b26b","group_id":"74df97bc51db4f4746b780d0839c2270a83a609f3d8f5d789d7995a795a3b26b","id":"INTERVALS-0005372","index":5372,"input":{"contigs":{"synthetic_A":1287,"synthetic_B":1105},"features":[{"basis":"one_closed","contig":"synthetic_B","end":190,"start":185,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":235,"start":189,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":238,"start":234,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1191,"start":1110,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":487,"start":369,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":235,"start":188,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":35},{"feature_index":2,"overlap_bases":2}],"query_bed":[158,194],"query_length":36,"union_overlap_bases":36},"family":"overlapping_blocks","fingerprint":"496f40bed2850d5a3dfbbaf91eb203b3ca1562978d9fcf4ee5b7fc29a720a557","group_id":"496f40bed2850d5a3dfbbaf91eb203b3ca1562978d9fcf4ee5b7fc29a720a557","id":"INTERVALS-0005412","index":5412,"input":{"contigs":{"synthetic_A":1709,"synthetic_B":618},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":161,"start":155,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":194,"start":159,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":197,"start":193,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1080,"start":1075,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":123,"start":51,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1632,"start":1549,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":484,"start":373,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":459,"start":355,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":281,"start":208,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":574,"start":454,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":196,"start":155,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":752,"start":671,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":194,"start":158,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":39}],"query_bed":[535,574],"query_length":39,"union_overlap_bases":39},"family":"stranded","fingerprint":"3f005e38db185b1968b4fa333e0d9019b65f43ca8767f832f190f4c5e46ad39c","group_id":"3f005e38db185b1968b4fa333e0d9019b65f43ca8767f832f190f4c5e46ad39c","id":"INTERVALS-0005413","index":5413,"input":{"contigs":{"synthetic_A":1310,"synthetic_B":1603},"features":[{"basis":"one_closed","contig":"synthetic_A","end":574,"start":536,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":574,"start":535,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":855,"start":845,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":725,"start":614,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":501,"start":409,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":228,"start":169,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":128,"start":122,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":734,"start":641,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":574,"start":535,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":34}],"query_bed":[370,404],"query_length":34,"union_overlap_bases":34},"family":"coordinate_conversion","fingerprint":"415b2582f93b114688c57636ebf05f50c43396ee69b3339325b21c707db9987d","group_id":"415b2582f93b114688c57636ebf05f50c43396ee69b3339325b21c707db9987d","id":"INTERVALS-0005414","index":5414,"input":{"contigs":{"synthetic_A":719,"synthetic_B":1731},"features":[{"basis":"one_closed","contig":"synthetic_A","end":404,"start":371,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":152,"start":119,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":607,"start":539,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":666,"start":563,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":337,"start":280,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":404,"start":371,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[999,1050],"query_length":51,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"2f2efa6e73ffbb35f30adf0013576c6a1187babedb44e24ff145deaa08a3a37c","group_id":"2f2efa6e73ffbb35f30adf0013576c6a1187babedb44e24ff145deaa08a3a37c","id":"INTERVALS-0005420","index":5420,"input":{"contigs":{"synthetic_A":815,"synthetic_B":1202},"features":[{"basis":"one_closed","contig":"synthetic_B","end":999,"start":985,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1077,"start":1050,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":822,"start":711,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":240,"start":179,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":204,"start":115,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":626,"start":511,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":781,"start":672,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":459,"start":369,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1050,"start":999,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":61},{"feature_index":1,"overlap_bases":59}],"query_bed":[330,391],"query_length":61,"union_overlap_bases":61},"family":"nested","fingerprint":"e4a0498e04410c4529042eec90a35f3d92a76ad5120abc77bd30ad8134e3ba70","group_id":"e4a0498e04410c4529042eec90a35f3d92a76ad5120abc77bd30ad8134e3ba70","id":"INTERVALS-0005461","index":5461,"input":{"contigs":{"synthetic_A":1740,"synthetic_B":1563},"features":[{"basis":"one_closed","contig":"synthetic_A","end":396,"start":326,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":390,"start":331,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1620,"start":1591,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":951,"start":949,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":181,"start":72,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1452,"start":1428,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":754,"start":691,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1137,"start":1031,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1477,"start":1438,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1445,"start":1336,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1278,"start":1265,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":391,"start":330,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":6},{"feature_index":1,"overlap_bases":4}],"query_bed":[835,841],"query_length":6,"union_overlap_bases":6},"family":"nested","fingerprint":"61b0b19eaa1f2c6e1cb698242c9e9f19320757460896a6f76ecbdac386acc07a","group_id":"61b0b19eaa1f2c6e1cb698242c9e9f19320757460896a6f76ecbdac386acc07a","id":"INTERVALS-0005481","index":5481,"input":{"contigs":{"synthetic_A":1270,"synthetic_B":994},"features":[{"basis":"one_closed","contig":"synthetic_A","end":846,"start":831,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":840,"start":837,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":423,"start":339,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":717,"start":683,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":381,"start":263,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1102,"start":1024,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":841,"start":835,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":42},{"feature_index":2,"overlap_bases":2}],"query_bed":[167,210],"query_length":43,"union_overlap_bases":43},"family":"overlapping_blocks","fingerprint":"d405458439fd8d9eccc447736e9061f290561538f66da8b9f54e8305c3826d2d","group_id":"d405458439fd8d9eccc447736e9061f290561538f66da8b9f54e8305c3826d2d","id":"INTERVALS-0005482","index":5482,"input":{"contigs":{"synthetic_A":918,"synthetic_B":886},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":170,"start":164,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":210,"start":169,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":213,"start":209,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":626,"start":567,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":616,"start":570,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":672,"start":563,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":753,"start":671,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":674,"start":672,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":386,"start":342,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":123,"start":8,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":210,"start":167,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":30},{"feature_index":2,"overlap_bases":2}],"query_bed":[1168,1199],"query_length":31,"union_overlap_bases":31},"family":"overlapping_blocks","fingerprint":"5ea5793a1142f936ebbc8d7a2c59b0e003b436790f3b3329fca88e7193a6035c","group_id":"5ea5793a1142f936ebbc8d7a2c59b0e003b436790f3b3329fca88e7193a6035c","id":"INTERVALS-0005487","index":5487,"input":{"contigs":{"synthetic_A":1231,"synthetic_B":1461},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1171,"start":1166,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1199,"start":1169,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1202,"start":1197,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":970,"start":894,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":466,"start":456,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":608,"start":515,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":271,"start":171,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":767,"start":647,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":760,"start":742,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1058,"start":977,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":363,"start":309,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":382,"start":315,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1199,"start":1168,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":39},{"feature_index":6,"overlap_bases":8}],"query_bed":[323,362],"query_length":39,"union_overlap_bases":39},"family":"stranded","fingerprint":"b52ae3083ec63429b922ec8bb228e7c713b5228bc14d13d4f810bb95a58be58d","group_id":"b52ae3083ec63429b922ec8bb228e7c713b5228bc14d13d4f810bb95a58be58d","id":"INTERVALS-0005488","index":5488,"input":{"contigs":{"synthetic_A":1386,"synthetic_B":716},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":362,"start":323,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":362,"start":324,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":282,"start":235,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1266,"start":1240,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1107,"start":987,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1220,"start":1112,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":365,"start":355,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":97,"start":90,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":362,"start":324,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":8}],"query_bed":[60,68],"query_length":8,"union_overlap_bases":8},"family":"coordinate_conversion","fingerprint":"1da6404053a3ea3874ad302b75664d2e298305189dff75b455c57411caf5b4e8","group_id":"1da6404053a3ea3874ad302b75664d2e298305189dff75b455c57411caf5b4e8","id":"INTERVALS-0005494","index":5494,"input":{"contigs":{"synthetic_A":682,"synthetic_B":801},"features":[{"basis":"one_closed","contig":"synthetic_A","end":68,"start":61,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":108,"start":69,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":705,"start":663,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":141,"start":41,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":469,"start":424,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":603,"start":523,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":743,"start":662,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":427,"start":336,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":510,"start":426,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":68,"start":61,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":21}],"query_bed":[349,370],"query_length":21,"union_overlap_bases":21},"family":"stranded","fingerprint":"c39b64d025b0ed1d41a394aeac2d27b15808a896ef2f4da09884d1a7dedf85c5","group_id":"c39b64d025b0ed1d41a394aeac2d27b15808a896ef2f4da09884d1a7dedf85c5","id":"INTERVALS-0005498","index":5498,"input":{"contigs":{"synthetic_A":1529,"synthetic_B":1139},"features":[{"basis":"one_closed","contig":"synthetic_B","end":370,"start":350,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":370,"start":350,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":199,"start":108,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":847,"start":765,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":732,"start":730,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":370,"start":350,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":77}],"query_bed":[495,572],"query_length":77,"union_overlap_bases":77},"family":"stranded","fingerprint":"98d153e078ad2be06570dc476191a093eff0f1a944c520ee0a2bb3b47870a97f","group_id":"98d153e078ad2be06570dc476191a093eff0f1a944c520ee0a2bb3b47870a97f","id":"INTERVALS-0005513","index":5513,"input":{"contigs":{"synthetic_A":1114,"synthetic_B":1418},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":572,"start":495,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":572,"start":496,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":115,"start":2,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":357,"start":244,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":150,"start":76,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":334,"start":245,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1134,"start":1128,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":939,"start":820,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":185,"start":116,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":659,"start":625,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":850,"start":730,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":572,"start":495,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":11},{"feature_index":3,"overlap_bases":11}],"query_bed":[66,77],"query_length":11,"union_overlap_bases":11},"family":"coordinate_conversion","fingerprint":"30d4bf8e492d0aa3053f17a753350c7ca1115f6a60ad147c80829b42b687dcab","group_id":"30d4bf8e492d0aa3053f17a753350c7ca1115f6a60ad147c80829b42b687dcab","id":"INTERVALS-0005519","index":5519,"input":{"contigs":{"synthetic_A":641,"synthetic_B":1271},"features":[{"basis":"one_closed","contig":"synthetic_A","end":77,"start":67,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":185,"start":176,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1043,"start":979,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":153,"start":54,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":472,"start":432,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":77,"start":67,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":7,"overlap_bases":66}],"query_bed":[594,660],"query_length":66,"union_overlap_bases":66},"family":"touching_boundary","fingerprint":"60e0c4346dbbc109b1ff5d1d264d6e3d336a583af912b4b373761bad8408f832","group_id":"60e0c4346dbbc109b1ff5d1d264d6e3d336a583af912b4b373761bad8408f832","id":"INTERVALS-0005525","index":5525,"input":{"contigs":{"synthetic_A":777,"synthetic_B":1245},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":594,"start":575,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":691,"start":661,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":388,"start":327,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":109,"start":49,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":517,"start":445,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":412,"start":329,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1010,"start":969,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":664,"start":560,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":258,"start":196,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":660,"start":595,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":70}],"query_bed":[621,691],"query_length":70,"union_overlap_bases":70},"family":"stranded","fingerprint":"8648dcb626edd4c2fc348105d6339e2b7291bdaa68425cabd099cefdffbae736","group_id":"8648dcb626edd4c2fc348105d6339e2b7291bdaa68425cabd099cefdffbae736","id":"INTERVALS-0005538","index":5538,"input":{"contigs":{"synthetic_A":1735,"synthetic_B":1435},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":691,"start":621,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":691,"start":622,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1161,"start":1140,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":97,"start":4,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1256,"start":1175,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1075,"start":1017,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1371,"start":1362,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":804,"start":753,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":691,"start":622,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":27}],"query_bed":[856,883],"query_length":27,"union_overlap_bases":27},"family":"stranded","fingerprint":"a59f6ccedc72234a7bb00f9c65afddd703e2bc9695eee95d462430871f9ee81a","group_id":"a59f6ccedc72234a7bb00f9c65afddd703e2bc9695eee95d462430871f9ee81a","id":"INTERVALS-0005558","index":5558,"input":{"contigs":{"synthetic_A":1728,"synthetic_B":1342},"features":[{"basis":"one_closed","contig":"synthetic_B","end":883,"start":857,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":883,"start":857,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1337,"start":1272,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":842,"start":799,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":629,"start":529,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1449,"start":1388,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":827,"start":797,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1020,"start":968,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1163,"start":1109,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":722,"start":692,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":978,"start":973,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":192,"start":155,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":883,"start":856,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":75}],"query_bed":[356,431],"query_length":75,"union_overlap_bases":75},"family":"coordinate_conversion","fingerprint":"7bea2e2878a5cccf3ca8b9d58b10b394393cddd6d79c4f02bfb1caf31de1d9e6","group_id":"7bea2e2878a5cccf3ca8b9d58b10b394393cddd6d79c4f02bfb1caf31de1d9e6","id":"INTERVALS-0005564","index":5564,"input":{"contigs":{"synthetic_A":1461,"synthetic_B":1361},"features":[{"basis":"one_closed","contig":"synthetic_B","end":431,"start":357,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":756,"start":656,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":855,"start":762,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":921,"start":862,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":325,"start":221,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":675,"start":613,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":608,"start":518,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":238,"start":218,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":268,"start":170,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1129,"start":1010,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":953,"start":924,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":431,"start":357,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":60},{"feature_index":2,"overlap_bases":2}],"query_bed":[813,874],"query_length":61,"union_overlap_bases":61},"family":"overlapping_blocks","fingerprint":"5fb17d10993a1a823dd858705695fe0ea07b7fc07a470db23fd9fc9009b13b53","group_id":"5fb17d10993a1a823dd858705695fe0ea07b7fc07a470db23fd9fc9009b13b53","id":"INTERVALS-0005577","index":5577,"input":{"contigs":{"synthetic_A":862,"synthetic_B":1154},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":816,"start":810,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":874,"start":815,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":877,"start":873,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":637,"start":608,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":207,"start":160,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":148,"start":66,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":965,"start":895,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":169,"start":119,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":874,"start":814,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1132,1193],"query_length":61,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"dea22fd483e1105ef33b9b62439ac97fa6c9597572284994537536ff0711b93f","group_id":"dea22fd483e1105ef33b9b62439ac97fa6c9597572284994537536ff0711b93f","id":"INTERVALS-0005595","index":5595,"input":{"contigs":{"synthetic_A":1680,"synthetic_B":928},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1132,"start":1132,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1201,"start":1193,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":457,"start":339,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":817,"start":814,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":148,"start":131,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":291,"start":193,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":629,"start":590,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":715,"start":653,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":406,"start":317,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":785,"start":749,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1193,"start":1133,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":8},{"feature_index":1,"overlap_bases":8},{"feature_index":3,"overlap_bases":8}],"query_bed":[534,542],"query_length":8,"union_overlap_bases":8},"family":"coordinate_conversion","fingerprint":"b0fc57801f8df0f5c649c85b5203519c21525d77211f55bb93cec4badee33122","group_id":"b0fc57801f8df0f5c649c85b5203519c21525d77211f55bb93cec4badee33122","id":"INTERVALS-0005599","index":5599,"input":{"contigs":{"synthetic_A":1454,"synthetic_B":1088},"features":[{"basis":"one_closed","contig":"synthetic_B","end":542,"start":535,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":574,"start":503,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":807,"start":789,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":582,"start":509,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":102,"start":33,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1149,"start":1120,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":751,"start":726,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":78,"start":36,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":188,"start":182,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":624,"start":553,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":542,"start":535,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":22},{"feature_index":1,"overlap_bases":20}],"query_bed":[371,393],"query_length":22,"union_overlap_bases":22},"family":"nested","fingerprint":"98913620d4a09ed4becba9b5fece971285a92822234a7cee17e0e45f27b50fdf","group_id":"98913620d4a09ed4becba9b5fece971285a92822234a7cee17e0e45f27b50fdf","id":"INTERVALS-0005601","index":5601,"input":{"contigs":{"synthetic_A":1364,"synthetic_B":782},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":398,"start":366,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":392,"start":372,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":626,"start":512,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":581,"start":470,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":293,"start":228,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":189,"start":189,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1271,"start":1182,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":515,"start":438,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":715,"start":658,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1089,"start":1029,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":577,"start":536,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":543,"start":426,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":393,"start":371,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":41},{"feature_index":2,"overlap_bases":2}],"query_bed":[325,367],"query_length":42,"union_overlap_bases":42},"family":"overlapping_blocks","fingerprint":"88b1528a306137d093105a79b3ee89dd5d2ce50d976c13055a3e133fe27cf4af","group_id":"88b1528a306137d093105a79b3ee89dd5d2ce50d976c13055a3e133fe27cf4af","id":"INTERVALS-0005612","index":5612,"input":{"contigs":{"synthetic_A":1465,"synthetic_B":1392},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":328,"start":322,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":367,"start":327,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":370,"start":366,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":740,"start":646,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":163,"start":100,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":367,"start":325,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":73},{"feature_index":2,"overlap_bases":2},{"feature_index":4,"overlap_bases":65}],"query_bed":[492,566],"query_length":74,"union_overlap_bases":74},"family":"overlapping_blocks","fingerprint":"cc4d0c8cec66806deb4026ddc09a5ae12db48555a1e5db0feab00308a5237b26","group_id":"cc4d0c8cec66806deb4026ddc09a5ae12db48555a1e5db0feab00308a5237b26","id":"INTERVALS-0005627","index":5627,"input":{"contigs":{"synthetic_A":738,"synthetic_B":732},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":495,"start":489,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":566,"start":494,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":569,"start":565,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":320,"start":271,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":557,"start":469,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":173,"start":75,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":566,"start":492,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":20}],"query_bed":[1313,1333],"query_length":20,"union_overlap_bases":20},"family":"stranded","fingerprint":"e9fd2fc87a0d8913238187664f73684e56a1f7deeb5969cd19eb9ed0227ab92e","group_id":"e9fd2fc87a0d8913238187664f73684e56a1f7deeb5969cd19eb9ed0227ab92e","id":"INTERVALS-0005628","index":5628,"input":{"contigs":{"synthetic_A":1267,"synthetic_B":1688},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1333,"start":1313,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1333,"start":1313,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":604,"start":567,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1171,"start":1116,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":401,"start":352,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1163,"start":1075,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":58,"start":8,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":76,"start":12,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":581,"start":547,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":471,"start":373,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1268,"start":1256,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1333,"start":1314,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":44}],"query_bed":[446,490],"query_length":44,"union_overlap_bases":44},"family":"stranded","fingerprint":"409914566562b864b05b40952634306411f05b2fc5e25a746aacaa7dcfa0c07b","group_id":"409914566562b864b05b40952634306411f05b2fc5e25a746aacaa7dcfa0c07b","id":"INTERVALS-0005633","index":5633,"input":{"contigs":{"synthetic_A":788,"synthetic_B":669},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":490,"start":446,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":490,"start":447,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":208,"start":107,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":52,"start":0,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":554,"start":491,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":681,"start":568,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":147,"start":41,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":301,"start":241,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":490,"start":447,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":20},{"feature_index":1,"overlap_bases":18}],"query_bed":[91,111],"query_length":20,"union_overlap_bases":20},"family":"nested","fingerprint":"56fc0690c045d4d8b671055d776302c2359565696014174e7ff1ef894ff94e0c","group_id":"56fc0690c045d4d8b671055d776302c2359565696014174e7ff1ef894ff94e0c","id":"INTERVALS-0005681","index":5681,"input":{"contigs":{"synthetic_A":1768,"synthetic_B":1050},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":116,"start":86,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":110,"start":93,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1432,"start":1393,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":778,"start":714,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":711,"start":641,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":678,"start":570,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":592,"start":591,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":308,"start":290,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":434,"start":392,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":111,"start":91,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":41},{"feature_index":2,"overlap_bases":2}],"query_bed":[213,255],"query_length":42,"union_overlap_bases":42},"family":"overlapping_blocks","fingerprint":"0067d96c11e72bb2ffca819779aa8065f1be15d785f4afc90b4a1ba3b871f785","group_id":"0067d96c11e72bb2ffca819779aa8065f1be15d785f4afc90b4a1ba3b871f785","id":"INTERVALS-0005687","index":5687,"input":{"contigs":{"synthetic_A":937,"synthetic_B":673},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":216,"start":210,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":255,"start":214,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":258,"start":253,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":506,"start":455,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":341,"start":231,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":251,"start":139,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":546,"start":498,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":327,"start":236,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":558,"start":451,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":126,"start":107,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":286,"start":238,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":255,"start":214,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":12},{"feature_index":2,"overlap_bases":2}],"query_bed":[456,469],"query_length":13,"union_overlap_bases":13},"family":"overlapping_blocks","fingerprint":"af48077c2da7835ad3c2df07f0f317617b889444d54dcf0647aecea8801b2558","group_id":"af48077c2da7835ad3c2df07f0f317617b889444d54dcf0647aecea8801b2558","id":"INTERVALS-0005692","index":5692,"input":{"contigs":{"synthetic_A":1768,"synthetic_B":866},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":459,"start":453,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":469,"start":458,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":472,"start":468,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":745,"start":732,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":293,"start":191,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":359,"start":259,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":665,"start":613,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":469,"start":456,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":68},{"feature_index":1,"overlap_bases":66},{"feature_index":7,"overlap_bases":11}],"query_bed":[295,363],"query_length":68,"union_overlap_bases":68},"family":"nested","fingerprint":"c4d84fb6c49154856a2727e185a38461e4396f80bd354d02b47309c8047e1bbe","group_id":"c4d84fb6c49154856a2727e185a38461e4396f80bd354d02b47309c8047e1bbe","id":"INTERVALS-0005696","index":5696,"input":{"contigs":{"synthetic_A":865,"synthetic_B":1178},"features":[{"basis":"one_closed","contig":"synthetic_B","end":368,"start":291,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":362,"start":297,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":608,"start":548,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":551,"start":511,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":582,"start":494,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":227,"start":161,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":709,"start":602,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":408,"start":353,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":551,"start":530,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":363,"start":296,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":30},{"feature_index":2,"overlap_bases":2}],"query_bed":[467,498],"query_length":31,"union_overlap_bases":31},"family":"overlapping_blocks","fingerprint":"b1f237aec72404672b789ba437770935ac7b2d40b18125fb7a11b1e695a51308","group_id":"b1f237aec72404672b789ba437770935ac7b2d40b18125fb7a11b1e695a51308","id":"INTERVALS-0005702","index":5702,"input":{"contigs":{"synthetic_A":797,"synthetic_B":1211},"features":[{"basis":"one_closed","contig":"synthetic_A","end":470,"start":465,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":498,"start":469,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":501,"start":497,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1124,"start":1033,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":432,"start":390,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":314,"start":226,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":380,"start":339,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":653,"start":576,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":338,"start":337,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":498,"start":467,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":22}],"query_bed":[769,791],"query_length":22,"union_overlap_bases":22},"family":"coordinate_conversion","fingerprint":"42fd46ae80ebc5f70f38993e4b50365be7bf91987c0723c36c6e5b18758058c1","group_id":"42fd46ae80ebc5f70f38993e4b50365be7bf91987c0723c36c6e5b18758058c1","id":"INTERVALS-0005709","index":5709,"input":{"contigs":{"synthetic_A":1282,"synthetic_B":1088},"features":[{"basis":"one_closed","contig":"synthetic_A","end":791,"start":770,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":845,"start":799,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":843,"start":781,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":45,"start":40,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":564,"start":468,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":622,"start":511,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":806,"start":749,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":143,"start":37,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":791,"start":770,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":35}],"query_bed":[181,216],"query_length":35,"union_overlap_bases":35},"family":"stranded","fingerprint":"18079dd2a26262db94362dfc881d87026857c38bc6dbfd923dff6311087d91a3","group_id":"18079dd2a26262db94362dfc881d87026857c38bc6dbfd923dff6311087d91a3","id":"INTERVALS-0005728","index":5728,"input":{"contigs":{"synthetic_A":1220,"synthetic_B":1757},"features":[{"basis":"one_closed","contig":"synthetic_B","end":216,"start":182,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":216,"start":181,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":494,"start":428,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":475,"start":459,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1595,"start":1532,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":357,"start":317,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":216,"start":182,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":19},{"feature_index":4,"overlap_bases":19}],"query_bed":[256,275],"query_length":19,"union_overlap_bases":19},"family":"coordinate_conversion","fingerprint":"19c906f69c0d26b3243d1c46736ae3253c280750711c77df17473b7d783bcfeb","group_id":"19c906f69c0d26b3243d1c46736ae3253c280750711c77df17473b7d783bcfeb","id":"INTERVALS-0005729","index":5729,"input":{"contigs":{"synthetic_A":824,"synthetic_B":1176},"features":[{"basis":"one_closed","contig":"synthetic_B","end":275,"start":257,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":464,"start":355,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":783,"start":700,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":657,"start":635,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":290,"start":228,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":275,"start":257,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":6},{"feature_index":2,"overlap_bases":2}],"query_bed":[935,942],"query_length":7,"union_overlap_bases":7},"family":"overlapping_blocks","fingerprint":"c6e1fae641cdba5bfcfd2e23d94c55ac3fa67d97e276dfd57acaedf7760fe70b","group_id":"c6e1fae641cdba5bfcfd2e23d94c55ac3fa67d97e276dfd57acaedf7760fe70b","id":"INTERVALS-0005732","index":5732,"input":{"contigs":{"synthetic_A":1286,"synthetic_B":1130},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":938,"start":932,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":942,"start":937,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":945,"start":941,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":833,"start":713,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":898,"start":808,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":152,"start":39,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":282,"start":230,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":168,"start":132,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":398,"start":379,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":942,"start":936,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":23},{"feature_index":1,"overlap_bases":21}],"query_bed":[59,82],"query_length":23,"union_overlap_bases":23},"family":"nested","fingerprint":"62e463b2319634cef1e58bddda90c227e31a459b5676614d9c3bd238c3e2f066","group_id":"62e463b2319634cef1e58bddda90c227e31a459b5676614d9c3bd238c3e2f066","id":"INTERVALS-0005736","index":5736,"input":{"contigs":{"synthetic_A":1275,"synthetic_B":1035},"features":[{"basis":"one_closed","contig":"synthetic_A","end":87,"start":55,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":81,"start":61,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":734,"start":734,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":974,"start":884,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":819,"start":706,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":224,"start":184,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":156,"start":75,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":167,"start":92,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":252,"start":223,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":949,"start":829,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":284,"start":232,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":648,"start":574,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":82,"start":59,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":29}],"query_bed":[242,271],"query_length":29,"union_overlap_bases":29},"family":"stranded","fingerprint":"7cb6bbf0a648e03c638157aee988b8a386d602a923bb4b961a50888afa070816","group_id":"7cb6bbf0a648e03c638157aee988b8a386d602a923bb4b961a50888afa070816","id":"INTERVALS-0005768","index":5768,"input":{"contigs":{"synthetic_A":1779,"synthetic_B":1395},"features":[{"basis":"one_closed","contig":"synthetic_B","end":271,"start":243,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":271,"start":242,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":947,"start":921,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":116,"start":15,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1251,"start":1246,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":132,"start":78,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":657,"start":643,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1531,"start":1444,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":271,"start":243,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":40}],"query_bed":[622,662],"query_length":40,"union_overlap_bases":40},"family":"coordinate_conversion","fingerprint":"212ec6923f2b04ccf48395ef30c020d628357134b203ce715250fe7b6d557ac0","group_id":"212ec6923f2b04ccf48395ef30c020d628357134b203ce715250fe7b6d557ac0","id":"INTERVALS-0005769","index":5769,"input":{"contigs":{"synthetic_A":1471,"synthetic_B":742},"features":[{"basis":"one_closed","contig":"synthetic_A","end":662,"start":623,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":980,"start":862,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":434,"start":432,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":399,"start":329,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":165,"start":154,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":178,"start":138,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":155,"start":132,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":87,"start":15,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":353,"start":336,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":311,"start":219,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":804,"start":803,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":325,"start":291,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":662,"start":623,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":59},{"feature_index":1,"overlap_bases":57}],"query_bed":[413,472],"query_length":59,"union_overlap_bases":59},"family":"nested","fingerprint":"1719f99c4f09c5f3e7d21add73f4757b6514428c338040e4892ca912ea67fc09","group_id":"1719f99c4f09c5f3e7d21add73f4757b6514428c338040e4892ca912ea67fc09","id":"INTERVALS-0005771","index":5771,"input":{"contigs":{"synthetic_A":1341,"synthetic_B":1328},"features":[{"basis":"one_closed","contig":"synthetic_A","end":477,"start":409,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":471,"start":414,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":325,"start":254,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":611,"start":512,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":959,"start":878,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":651,"start":583,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":897,"start":799,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":365,"start":361,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":472,"start":413,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":65},{"feature_index":2,"overlap_bases":2}],"query_bed":[1213,1279],"query_length":66,"union_overlap_bases":66},"family":"overlapping_blocks","fingerprint":"f674a33acdf21a5b37c6cb368c765cca7d9feae92d184ad75ba96a31ee108c49","group_id":"f674a33acdf21a5b37c6cb368c765cca7d9feae92d184ad75ba96a31ee108c49","id":"INTERVALS-0005792","index":5792,"input":{"contigs":{"synthetic_A":1513,"synthetic_B":645},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1216,"start":1210,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1279,"start":1215,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1282,"start":1277,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":429,"start":357,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":379,"start":260,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":97,"start":60,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":447,"start":444,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1279,"start":1214,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":33}],"query_bed":[171,204],"query_length":33,"union_overlap_bases":33},"family":"stranded","fingerprint":"4d481d6e44cd17438108b5acb2c9c81879847b9544091cce889758d82a2b868b","group_id":"4d481d6e44cd17438108b5acb2c9c81879847b9544091cce889758d82a2b868b","id":"INTERVALS-0005798","index":5798,"input":{"contigs":{"synthetic_A":996,"synthetic_B":1067},"features":[{"basis":"one_closed","contig":"synthetic_A","end":204,"start":172,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":204,"start":171,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":551,"start":538,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":506,"start":441,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":92,"start":59,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":416,"start":334,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":920,"start":811,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":204,"start":171,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":27},{"feature_index":1,"overlap_bases":25}],"query_bed":[254,281],"query_length":27,"union_overlap_bases":27},"family":"nested","fingerprint":"f0259a1647d46fd1e60d23c49c8ce4f8cfa5879b912fa96d09d41f6f9e4c0b68","group_id":"f0259a1647d46fd1e60d23c49c8ce4f8cfa5879b912fa96d09d41f6f9e4c0b68","id":"INTERVALS-0005801","index":5801,"input":{"contigs":{"synthetic_A":686,"synthetic_B":1689},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":286,"start":249,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":280,"start":255,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":274,"start":209,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":379,"start":324,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":968,"start":874,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":255,"start":140,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":570,"start":456,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":888,"start":876,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":281,"start":255,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":76}],"query_bed":[1081,1157],"query_length":76,"union_overlap_bases":76},"family":"stranded","fingerprint":"d9bed4229e86a0897d5aa8236a9928d1d06d1b2f9d6cf280107853207dfa2d1a","group_id":"d9bed4229e86a0897d5aa8236a9928d1d06d1b2f9d6cf280107853207dfa2d1a","id":"INTERVALS-0005808","index":5808,"input":{"contigs":{"synthetic_A":940,"synthetic_B":1713},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1157,"start":1082,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1157,"start":1082,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":176,"start":82,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1437,"start":1322,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":837,"start":725,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":435,"start":338,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1571,"start":1478,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":373,"start":334,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":187,"start":84,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1157,"start":1081,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":2,"overlap_bases":14}],"query_bed":[517,531],"query_length":14,"union_overlap_bases":14},"family":"touching_boundary","fingerprint":"c702f0acdd94d228b589441b2bdb08bb0565d27837ac6f64ef5bcde47413ad52","group_id":"c702f0acdd94d228b589441b2bdb08bb0565d27837ac6f64ef5bcde47413ad52","id":"INTERVALS-0005815","index":5815,"input":{"contigs":{"synthetic_A":1397,"synthetic_B":1167},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":517,"start":512,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":547,"start":532,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":588,"start":494,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":240,"start":203,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1177,"start":1130,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":161,"start":78,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1218,"start":1192,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1003,"start":941,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":490,"start":392,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1004,"start":916,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":531,"start":517,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[978,1003],"query_length":25,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"dd489678a4134457b92193fde582935520c0f6e77e509caf661fe81f9792168b","group_id":"dd489678a4134457b92193fde582935520c0f6e77e509caf661fe81f9792168b","id":"INTERVALS-0005835","index":5835,"input":{"contigs":{"synthetic_A":1195,"synthetic_B":605},"features":[{"basis":"one_closed","contig":"synthetic_A","end":978,"start":972,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1017,"start":1004,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":178,"start":97,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":385,"start":350,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":783,"start":698,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":641,"start":572,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":796,"start":753,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1145,"start":1061,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":179,"start":116,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":279,"start":199,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":256,"start":159,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":306,"start":189,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1003,"start":979,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[43,95],"query_length":52,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"1cb4c37830d0360c37122896bd0263eb6ae220153fb57e0610f39af279ac384e","group_id":"1cb4c37830d0360c37122896bd0263eb6ae220153fb57e0610f39af279ac384e","id":"INTERVALS-0005840","index":5840,"input":{"contigs":{"synthetic_A":1644,"synthetic_B":1327},"features":[{"basis":"one_closed","contig":"synthetic_B","end":43,"start":27,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":126,"start":96,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1279,"start":1276,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":339,"start":270,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1607,"start":1515,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":235,"start":139,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":574,"start":550,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1046,"start":955,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":533,"start":507,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":446,"start":409,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1498,"start":1495,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":95,"start":44,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":59}],"query_bed":[277,336],"query_length":59,"union_overlap_bases":59},"family":"stranded","fingerprint":"cf7b5530dddb7138258f2c6634303f60a9e14ab1148bd3a168d3917d47f0d4a7","group_id":"cf7b5530dddb7138258f2c6634303f60a9e14ab1148bd3a168d3917d47f0d4a7","id":"INTERVALS-0005843","index":5843,"input":{"contigs":{"synthetic_A":1392,"synthetic_B":749},"features":[{"basis":"one_closed","contig":"synthetic_A","end":336,"start":278,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":336,"start":277,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":262,"start":194,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":93,"start":87,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":367,"start":268,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":704,"start":620,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":491,"start":485,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":451,"start":441,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":280,"start":255,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":336,"start":277,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":53},{"feature_index":1,"overlap_bases":51},{"feature_index":10,"overlap_bases":44}],"query_bed":[283,336],"query_length":53,"union_overlap_bases":53},"family":"nested","fingerprint":"f61ec5aa3fe2547cfb2a7f79c7c69b5edac5168adf852c63e78d7c84a56cee33","group_id":"f61ec5aa3fe2547cfb2a7f79c7c69b5edac5168adf852c63e78d7c84a56cee33","id":"INTERVALS-0005846","index":5846,"input":{"contigs":{"synthetic_A":913,"synthetic_B":662},"features":[{"basis":"one_closed","contig":"synthetic_B","end":341,"start":279,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":335,"start":284,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":105,"start":80,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":651,"start":550,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":507,"start":405,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":378,"start":363,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":656,"start":595,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":635,"start":515,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":175,"start":73,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":96,"start":28,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":327,"start":238,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":336,"start":284,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[114,179],"query_length":65,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"a35f49f29e3129c3fc2b8b645a138042e4a1a8059a0070eb46d59402c8dd8809","group_id":"a35f49f29e3129c3fc2b8b645a138042e4a1a8059a0070eb46d59402c8dd8809","id":"INTERVALS-0005850","index":5850,"input":{"contigs":{"synthetic_A":1495,"synthetic_B":994},"features":[{"basis":"one_closed","contig":"synthetic_B","end":114,"start":114,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":209,"start":180,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":334,"start":255,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":624,"start":510,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":204,"start":199,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":234,"start":190,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":179,"start":114,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56},{"feature_index":1,"overlap_bases":54}],"query_bed":[405,461],"query_length":56,"union_overlap_bases":56},"family":"nested","fingerprint":"9749f75c583984b9dfd5413ad433781248abdac5c8402b6fa46e0e012396e88f","group_id":"9749f75c583984b9dfd5413ad433781248abdac5c8402b6fa46e0e012396e88f","id":"INTERVALS-0005856","index":5856,"input":{"contigs":{"synthetic_A":870,"synthetic_B":1200},"features":[{"basis":"one_closed","contig":"synthetic_A","end":466,"start":401,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":460,"start":406,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":733,"start":633,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":369,"start":284,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":404,"start":358,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":465,"start":353,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":438,"start":415,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":461,"start":405,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":47}],"query_bed":[265,312],"query_length":47,"union_overlap_bases":47},"family":"stranded","fingerprint":"2d794b98744365860c5c02e1e8806abfb4fdcc93a0b85ad4e4015f00002ba4fa","group_id":"2d794b98744365860c5c02e1e8806abfb4fdcc93a0b85ad4e4015f00002ba4fa","id":"INTERVALS-0005858","index":5858,"input":{"contigs":{"synthetic_A":735,"synthetic_B":1567},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":312,"start":265,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":312,"start":266,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":578,"start":576,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":611,"start":503,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":268,"start":243,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":587,"start":537,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":389,"start":350,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":312,"start":265,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":40}],"query_bed":[20,60],"query_length":40,"union_overlap_bases":40},"family":"stranded","fingerprint":"ea373ac4b1f3fcc32e8e08116bcfedb648b3a30a8867b5f5a376bb0a752b9aa7","group_id":"ea373ac4b1f3fcc32e8e08116bcfedb648b3a30a8867b5f5a376bb0a752b9aa7","id":"INTERVALS-0005868","index":5868,"input":{"contigs":{"synthetic_A":707,"synthetic_B":1055},"features":[{"basis":"one_closed","contig":"synthetic_A","end":60,"start":21,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":60,"start":21,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":930,"start":898,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":478,"start":451,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":708,"start":701,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":60,"start":20,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":25}],"query_bed":[657,682],"query_length":25,"union_overlap_bases":25},"family":"coordinate_conversion","fingerprint":"df722e3cfacbd6d723559840d709c1c7dd93d5757c96566b551942a7e9eda70e","group_id":"df722e3cfacbd6d723559840d709c1c7dd93d5757c96566b551942a7e9eda70e","id":"INTERVALS-0005869","index":5869,"input":{"contigs":{"synthetic_A":1209,"synthetic_B":1118},"features":[{"basis":"one_closed","contig":"synthetic_B","end":682,"start":658,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1007,"start":895,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":736,"start":716,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":604,"start":494,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1050,"start":1026,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":682,"start":658,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[520,579],"query_length":59,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"540ab88ce99126522abd2248612ad06f55a362831487388d8fd8bb2ede1b949d","group_id":"540ab88ce99126522abd2248612ad06f55a362831487388d8fd8bb2ede1b949d","id":"INTERVALS-0005870","index":5870,"input":{"contigs":{"synthetic_A":1032,"synthetic_B":1663},"features":[{"basis":"one_closed","contig":"synthetic_A","end":520,"start":509,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":613,"start":580,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1301,"start":1191,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":95,"start":30,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":764,"start":743,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":794,"start":767,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":579,"start":520,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":61},{"feature_index":3,"overlap_bases":9}],"query_bed":[638,699],"query_length":61,"union_overlap_bases":61},"family":"stranded","fingerprint":"99fbb36eb3e62be7217a1b78161e16ec927567f8e028785de2f16284e1134191","group_id":"99fbb36eb3e62be7217a1b78161e16ec927567f8e028785de2f16284e1134191","id":"INTERVALS-0005873","index":5873,"input":{"contigs":{"synthetic_A":973,"synthetic_B":1251},"features":[{"basis":"one_closed","contig":"synthetic_A","end":699,"start":639,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":699,"start":639,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":366,"start":330,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":666,"start":657,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":182,"start":68,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":824,"start":779,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":273,"start":241,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":859,"start":743,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":536,"start":448,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":207,"start":102,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":456,"start":393,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1129,"start":1047,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":699,"start":638,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":65},{"feature_index":1,"overlap_bases":63},{"feature_index":2,"overlap_bases":57}],"query_bed":[475,540],"query_length":65,"union_overlap_bases":65},"family":"nested","fingerprint":"5fc2c214713301327aa15b4aceb67a1aaa46a739b4bda66c7ec87a3939696c75","group_id":"5fc2c214713301327aa15b4aceb67a1aaa46a739b4bda66c7ec87a3939696c75","id":"INTERVALS-0005896","index":5896,"input":{"contigs":{"synthetic_A":771,"synthetic_B":1133},"features":[{"basis":"one_closed","contig":"synthetic_A","end":545,"start":471,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":539,"start":476,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":532,"start":468,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":192,"start":183,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":678,"start":608,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":161,"start":116,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":161,"start":144,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":839,"start":788,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":553,"start":455,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":610,"start":552,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":61,"start":50,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":540,"start":476,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[102,148],"query_length":46,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"aad608ec64b31e40ebed826af362ff6fb9cc904849b6ac75b9a73db45510c23a","group_id":"aad608ec64b31e40ebed826af362ff6fb9cc904849b6ac75b9a73db45510c23a","id":"INTERVALS-0005900","index":5900,"input":{"contigs":{"synthetic_A":1688,"synthetic_B":1345},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":102,"start":91,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":150,"start":148,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":216,"start":182,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":751,"start":681,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":132,"start":42,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":148,"start":103,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":69}],"query_bed":[972,1041],"query_length":69,"union_overlap_bases":69},"family":"coordinate_conversion","fingerprint":"4fac1042b09d91b7c1875749e74246e44e9a0bda51e123db0e352e143933e57a","group_id":"4fac1042b09d91b7c1875749e74246e44e9a0bda51e123db0e352e143933e57a","id":"INTERVALS-0005914","index":5914,"input":{"contigs":{"synthetic_A":1335,"synthetic_B":1130},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1041,"start":973,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1106,"start":1008,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":218,"start":196,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":460,"start":441,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":196,"start":124,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":257,"start":180,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1041,"start":973,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18}],"query_bed":[350,368],"query_length":18,"union_overlap_bases":18},"family":"coordinate_conversion","fingerprint":"06a6b5be14edd3b2013cd2edc52740c210aea0992183c10dd64e9ca76c5f859c","group_id":"06a6b5be14edd3b2013cd2edc52740c210aea0992183c10dd64e9ca76c5f859c","id":"INTERVALS-0005929","index":5929,"input":{"contigs":{"synthetic_A":1696,"synthetic_B":1512},"features":[{"basis":"one_closed","contig":"synthetic_B","end":368,"start":351,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":722,"start":677,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":577,"start":471,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1182,"start":1168,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":521,"start":499,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":555,"start":528,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":207,"start":167,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":982,"start":872,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":123,"start":9,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":519,"start":423,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":368,"start":351,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":52},{"feature_index":1,"overlap_bases":50}],"query_bed":[893,945],"query_length":52,"union_overlap_bases":52},"family":"nested","fingerprint":"c1c345b0c8e248b473caaa5b84ceb85c376af32bbf6707309d5944d49763ebc4","group_id":"c1c345b0c8e248b473caaa5b84ceb85c376af32bbf6707309d5944d49763ebc4","id":"INTERVALS-0005931","index":5931,"input":{"contigs":{"synthetic_A":994,"synthetic_B":1769},"features":[{"basis":"one_closed","contig":"synthetic_B","end":950,"start":889,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":944,"start":894,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":479,"start":447,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":910,"start":855,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":498,"start":403,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":92,"start":4,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":451,"start":444,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":943,"start":863,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":550,"start":461,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":945,"start":894,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":8,"overlap_bases":21}],"query_bed":[985,1007],"query_length":22,"union_overlap_bases":21},"family":"touching_boundary","fingerprint":"99c0d154672549a26e04b2bf7817d29153f6b0fb4afd56182fa43fc9c895894d","group_id":"99c0d154672549a26e04b2bf7817d29153f6b0fb4afd56182fa43fc9c895894d","id":"INTERVALS-0005940","index":5940,"input":{"contigs":{"synthetic_A":1606,"synthetic_B":1360},"features":[{"basis":"one_closed","contig":"synthetic_A","end":985,"start":969,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1014,"start":1008,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":272,"start":230,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":993,"start":922,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":37,"start":3,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1112,"start":1076,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":327,"start":310,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1348,"start":1256,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1062,"start":987,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":721,"start":658,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1007,"start":986,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":11,"overlap_bases":41}],"query_bed":[1002,1074],"query_length":72,"union_overlap_bases":41},"family":"touching_boundary","fingerprint":"d641379ae74f6845828db903d718b383a40dde707bc8c455b17d84d6b3a5039d","group_id":"d641379ae74f6845828db903d718b383a40dde707bc8c455b17d84d6b3a5039d","id":"INTERVALS-0005945","index":5945,"input":{"contigs":{"synthetic_A":1690,"synthetic_B":1558},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1002,"start":983,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1087,"start":1075,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":783,"start":778,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":229,"start":173,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1171,"start":1062,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":441,"start":438,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1282,"start":1177,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":628,"start":566,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1325,"start":1308,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":721,"start":635,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":346,"start":328,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1043,"start":1002,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1074,"start":1003,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":14}],"query_bed":[478,492],"query_length":14,"union_overlap_bases":14},"family":"stranded","fingerprint":"6273b96ef03f442848932a5d99f4c16603952cde4059ba4952e3f068c5ae8cf5","group_id":"6273b96ef03f442848932a5d99f4c16603952cde4059ba4952e3f068c5ae8cf5","id":"INTERVALS-0005948","index":5948,"input":{"contigs":{"synthetic_A":843,"synthetic_B":1010},"features":[{"basis":"one_closed","contig":"synthetic_B","end":492,"start":479,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":492,"start":479,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":593,"start":528,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":248,"start":246,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":302,"start":299,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":417,"start":354,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":353,"start":301,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":361,"start":266,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":83,"start":3,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":623,"start":562,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":298,"start":284,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":492,"start":479,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":56},{"feature_index":2,"overlap_bases":2},{"feature_index":5,"overlap_bases":52}],"query_bed":[155,212],"query_length":57,"union_overlap_bases":57},"family":"overlapping_blocks","fingerprint":"6c2929585e8ba5c7323af2223068befb9e694080a1cccc4bb4dcee4c77a9f0c9","group_id":"6c2929585e8ba5c7323af2223068befb9e694080a1cccc4bb4dcee4c77a9f0c9","id":"INTERVALS-0005952","index":5952,"input":{"contigs":{"synthetic_A":828,"synthetic_B":1212},"features":[{"basis":"one_closed","contig":"synthetic_A","end":158,"start":153,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":212,"start":156,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":215,"start":211,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":959,"start":897,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":272,"start":201,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":273,"start":161,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":455,"start":414,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":488,"start":456,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":647,"start":548,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":936,"start":869,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":76,"start":4,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":212,"start":156,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":67},{"feature_index":1,"overlap_bases":65}],"query_bed":[285,352],"query_length":67,"union_overlap_bases":67},"family":"nested","fingerprint":"435365fc9b5744c3a6160eca117bebbb5ec59f6f0ca8616e2c847848ac8699cf","group_id":"435365fc9b5744c3a6160eca117bebbb5ec59f6f0ca8616e2c847848ac8699cf","id":"INTERVALS-0005956","index":5956,"input":{"contigs":{"synthetic_A":1504,"synthetic_B":989},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":357,"start":280,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":351,"start":286,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":123,"start":92,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":239,"start":201,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1354,"start":1343,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":865,"start":835,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":662,"start":549,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":683,"start":637,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":629,"start":562,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1117,"start":1025,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":352,"start":285,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":15},{"feature_index":1,"overlap_bases":13},{"feature_index":10,"overlap_bases":15}],"query_bed":[665,680],"query_length":15,"union_overlap_bases":15},"family":"nested","fingerprint":"5696a6ce78fc32a0f29d57a2423b02711b3a9a96d40162d39b6e7609bc4d037f","group_id":"5696a6ce78fc32a0f29d57a2423b02711b3a9a96d40162d39b6e7609bc4d037f","id":"INTERVALS-0005961","index":5961,"input":{"contigs":{"synthetic_A":934,"synthetic_B":1407},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":685,"start":660,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":679,"start":666,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":195,"start":117,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":626,"start":588,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":301,"start":266,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":516,"start":494,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":406,"start":353,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":263,"start":239,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1054,"start":940,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":196,"start":154,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":726,"start":649,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":680,"start":665,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":22},{"feature_index":2,"overlap_bases":2}],"query_bed":[124,147],"query_length":23,"union_overlap_bases":23},"family":"overlapping_blocks","fingerprint":"0108d394b7f36e410c24d1d1a7a0b9c2850c184b897fad9366726cd8b8b6a844","group_id":"0108d394b7f36e410c24d1d1a7a0b9c2850c184b897fad9366726cd8b8b6a844","id":"INTERVALS-0005977","index":5977,"input":{"contigs":{"synthetic_A":1793,"synthetic_B":1584},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":127,"start":121,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":147,"start":126,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":150,"start":146,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":580,"start":534,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":393,"start":283,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1707,"start":1606,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":413,"start":355,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1266,"start":1251,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1664,"start":1592,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":186,"start":178,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":147,"start":124,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":6}],"query_bed":[602,608],"query_length":6,"union_overlap_bases":6},"family":"stranded","fingerprint":"c7b33cd2859d148280cdef7ad328aae64ac7b33acc26eff3ceb72eab08284e50","group_id":"c7b33cd2859d148280cdef7ad328aae64ac7b33acc26eff3ceb72eab08284e50","id":"INTERVALS-0005978","index":5978,"input":{"contigs":{"synthetic_A":1531,"synthetic_B":1211},"features":[{"basis":"one_closed","contig":"synthetic_A","end":608,"start":603,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":608,"start":603,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1172,"start":1060,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":528,"start":459,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":43,"start":42,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":151,"start":73,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":799,"start":688,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":96,"start":66,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":787,"start":683,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1077,"start":1067,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":515,"start":413,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":764,"start":651,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":608,"start":603,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[48,107],"query_length":59,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"0b893980cdea7aaf2e76d61d949c48523394f27329f4d53385c64a05d2134803","group_id":"0b893980cdea7aaf2e76d61d949c48523394f27329f4d53385c64a05d2134803","id":"INTERVALS-0005985","index":5985,"input":{"contigs":{"synthetic_A":828,"synthetic_B":626},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":48,"start":31,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":143,"start":107,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":455,"start":344,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":338,"start":226,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":333,"start":293,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":107,"start":48,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":70},{"feature_index":1,"overlap_bases":68}],"query_bed":[531,601],"query_length":70,"union_overlap_bases":70},"family":"nested","fingerprint":"35211fb09d96c56987a0e14a2a2dcc2d4bde7beb6d2d2cf1db1df4f1e1ecf576","group_id":"35211fb09d96c56987a0e14a2a2dcc2d4bde7beb6d2d2cf1db1df4f1e1ecf576","id":"INTERVALS-0005986","index":5986,"input":{"contigs":{"synthetic_A":1800,"synthetic_B":781},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":606,"start":526,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":600,"start":532,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":104,"start":94,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":681,"start":567,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1161,"start":1083,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1105,"start":1034,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":371,"start":370,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":232,"start":197,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":326,"start":292,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":277,"start":200,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":601,"start":531,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":15}],"query_bed":[680,695],"query_length":15,"union_overlap_bases":15},"family":"stranded","fingerprint":"8e01107c9e7814352e1f244e0e42960419c86b087eac9df42f1e8d0a6ae71f0e","group_id":"8e01107c9e7814352e1f244e0e42960419c86b087eac9df42f1e8d0a6ae71f0e","id":"INTERVALS-0006013","index":6013,"input":{"contigs":{"synthetic_A":1673,"synthetic_B":1019},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":695,"start":680,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":695,"start":680,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":603,"start":495,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":499,"start":469,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":933,"start":831,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":695,"start":680,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":77},{"feature_index":1,"overlap_bases":75},{"feature_index":4,"overlap_bases":1},{"feature_index":7,"overlap_bases":14}],"query_bed":[897,974],"query_length":77,"union_overlap_bases":77},"family":"nested","fingerprint":"55d79c524664245f086f1c72abbe91232b977eb2fd0c624cc84e05c4592e9613","group_id":"55d79c524664245f086f1c72abbe91232b977eb2fd0c624cc84e05c4592e9613","id":"INTERVALS-0006021","index":6021,"input":{"contigs":{"synthetic_A":671,"synthetic_B":1702},"features":[{"basis":"one_closed","contig":"synthetic_B","end":979,"start":893,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":973,"start":899,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":356,"start":356,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1425,"start":1356,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":898,"start":852,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1579,"start":1471,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":745,"start":696,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":982,"start":960,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":533,"start":482,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":974,"start":897,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46},{"feature_index":1,"overlap_bases":20}],"query_bed":[507,553],"query_length":46,"union_overlap_bases":46},"family":"coordinate_conversion","fingerprint":"10c5001e32d29885fc4a82982189105e2c40b194079a6efbf5e39b0bea244ca5","group_id":"10c5001e32d29885fc4a82982189105e2c40b194079a6efbf5e39b0bea244ca5","id":"INTERVALS-0006024","index":6024,"input":{"contigs":{"synthetic_A":1361,"synthetic_B":1160},"features":[{"basis":"one_closed","contig":"synthetic_B","end":553,"start":508,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":538,"start":519,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":505,"start":464,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":440,"start":340,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":875,"start":860,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":850,"start":833,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":405,"start":349,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1202,"start":1155,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":641,"start":578,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":901,"start":881,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":230,"start":113,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":553,"start":508,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":2,"overlap_bases":10}],"query_bed":[279,304],"query_length":25,"union_overlap_bases":10},"family":"touching_boundary","fingerprint":"6636d0ae919383f77b24d6ebefcebd0fcddad281b936269e3e6ad801d40942a9","group_id":"6636d0ae919383f77b24d6ebefcebd0fcddad281b936269e3e6ad801d40942a9","id":"INTERVALS-0006030","index":6030,"input":{"contigs":{"synthetic_A":963,"synthetic_B":1606},"features":[{"basis":"one_closed","contig":"synthetic_A","end":279,"start":274,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":326,"start":304,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":289,"start":238,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":79,"start":37,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":81,"start":74,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":267,"start":259,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1411,"start":1315,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1483,"start":1375,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":715,"start":601,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":83,"start":37,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":304,"start":279,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18}],"query_bed":[584,602],"query_length":18,"union_overlap_bases":18},"family":"coordinate_conversion","fingerprint":"6635db2c9c993ac888bec2bbea8ea7f7bcb8c7221759a6c6af913b6419f5fd9d","group_id":"6635db2c9c993ac888bec2bbea8ea7f7bcb8c7221759a6c6af913b6419f5fd9d","id":"INTERVALS-0006034","index":6034,"input":{"contigs":{"synthetic_A":1253,"synthetic_B":1344},"features":[{"basis":"one_closed","contig":"synthetic_A","end":602,"start":585,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1091,"start":999,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":96,"start":18,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":832,"start":780,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":238,"start":183,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1057,"start":946,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":898,"start":871,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":266,"start":256,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":602,"start":585,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":75},{"feature_index":2,"overlap_bases":2}],"query_bed":[869,945],"query_length":76,"union_overlap_bases":76},"family":"overlapping_blocks","fingerprint":"f8029644f83c8921d3b71ed24b970a6a432428e90232e607c3b4dbc414922191","group_id":"f8029644f83c8921d3b71ed24b970a6a432428e90232e607c3b4dbc414922191","id":"INTERVALS-0006042","index":6042,"input":{"contigs":{"synthetic_A":1674,"synthetic_B":1123},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":872,"start":866,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":945,"start":871,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":948,"start":944,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":204,"start":183,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":911,"start":825,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":155,"start":90,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":474,"start":452,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":204,"start":98,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":945,"start":869,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":30}],"query_bed":[216,246],"query_length":30,"union_overlap_bases":30},"family":"coordinate_conversion","fingerprint":"55771be88fde7070858764edb32c9956bd7047f3048b2fa88e8b7f30f9991549","group_id":"55771be88fde7070858764edb32c9956bd7047f3048b2fa88e8b7f30f9991549","id":"INTERVALS-0006044","index":6044,"input":{"contigs":{"synthetic_A":1375,"synthetic_B":1578},"features":[{"basis":"one_closed","contig":"synthetic_B","end":246,"start":217,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":135,"start":71,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":141,"start":124,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1016,"start":1001,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1127,"start":1061,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":374,"start":358,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":859,"start":834,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":690,"start":656,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":985,"start":866,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1019,"start":980,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":804,"start":765,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":246,"start":217,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":53}],"query_bed":[548,601],"query_length":53,"union_overlap_bases":53},"family":"coordinate_conversion","fingerprint":"4a02300eb33190f7ad3de82ddc570b62f9b597318f51687c9b4a6607dd87c4ea","group_id":"4a02300eb33190f7ad3de82ddc570b62f9b597318f51687c9b4a6607dd87c4ea","id":"INTERVALS-0006049","index":6049,"input":{"contigs":{"synthetic_A":1436,"synthetic_B":1662},"features":[{"basis":"one_closed","contig":"synthetic_B","end":601,"start":549,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":714,"start":679,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":908,"start":882,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":592,"start":551,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1531,"start":1523,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":307,"start":294,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":601,"start":549,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":38},{"feature_index":1,"overlap_bases":36}],"query_bed":[190,228],"query_length":38,"union_overlap_bases":38},"family":"nested","fingerprint":"1c7b55c018dcb28f944925a27c95b602ec8800fd85baf2731feec73f0e1a5d2d","group_id":"1c7b55c018dcb28f944925a27c95b602ec8800fd85baf2731feec73f0e1a5d2d","id":"INTERVALS-0006051","index":6051,"input":{"contigs":{"synthetic_A":1351,"synthetic_B":1361},"features":[{"basis":"one_closed","contig":"synthetic_B","end":233,"start":186,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":227,"start":192,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":366,"start":252,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1209,"start":1107,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":406,"start":315,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":504,"start":467,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":997,"start":996,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":514,"start":511,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":228,"start":191,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[288,299],"query_length":11,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"7ac6349c0635d215603250692db75063bd34c2066e3062fd7108db6aecc16f5e","group_id":"7ac6349c0635d215603250692db75063bd34c2066e3062fd7108db6aecc16f5e","id":"INTERVALS-0006095","index":6095,"input":{"contigs":{"synthetic_A":1444,"synthetic_B":1405},"features":[{"basis":"one_closed","contig":"synthetic_B","end":288,"start":278,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":312,"start":300,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":228,"start":201,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":340,"start":316,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":556,"start":533,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":685,"start":638,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":491,"start":423,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":810,"start":725,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":814,"start":722,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1053,"start":978,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1150,"start":1075,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":627,"start":587,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":299,"start":289,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":12}],"query_bed":[377,389],"query_length":12,"union_overlap_bases":12},"family":"stranded","fingerprint":"a0706c1c85e5ea457b0d64086f08502ba514c780e94ff75d95d406fa2e4976ba","group_id":"a0706c1c85e5ea457b0d64086f08502ba514c780e94ff75d95d406fa2e4976ba","id":"INTERVALS-0006098","index":6098,"input":{"contigs":{"synthetic_A":1210,"synthetic_B":1584},"features":[{"basis":"one_closed","contig":"synthetic_B","end":389,"start":378,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":389,"start":378,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":485,"start":408,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1274,"start":1261,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1014,"start":944,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":118,"start":70,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":180,"start":161,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":180,"start":131,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":134,"start":124,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":969,"start":864,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":389,"start":377,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":74},{"feature_index":6,"overlap_bases":60}],"query_bed":[585,659],"query_length":74,"union_overlap_bases":74},"family":"stranded","fingerprint":"d4643c3837c4d7d320e0efb088b0e20d30cd52065ec14da244595b9676cb9696","group_id":"d4643c3837c4d7d320e0efb088b0e20d30cd52065ec14da244595b9676cb9696","id":"INTERVALS-0006103","index":6103,"input":{"contigs":{"synthetic_A":809,"synthetic_B":1165},"features":[{"basis":"one_closed","contig":"synthetic_A","end":659,"start":586,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":659,"start":586,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":45,"start":29,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":259,"start":185,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":151,"start":59,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":686,"start":587,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":699,"start":599,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":601,"start":556,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":422,"start":395,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":268,"start":180,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":334,"start":320,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":245,"start":147,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":659,"start":586,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":41},{"feature_index":2,"overlap_bases":2}],"query_bed":[381,423],"query_length":42,"union_overlap_bases":42},"family":"overlapping_blocks","fingerprint":"bffaffde4ba9a551c622b0b6375b9053333ee73db18cb54acb511494040d89d1","group_id":"bffaffde4ba9a551c622b0b6375b9053333ee73db18cb54acb511494040d89d1","id":"INTERVALS-0006107","index":6107,"input":{"contigs":{"synthetic_A":691,"synthetic_B":1493},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":384,"start":378,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":423,"start":382,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":426,"start":422,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":373,"start":273,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":751,"start":704,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":214,"start":191,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":20,"start":18,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1265,"start":1230,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":227,"start":205,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":807,"start":706,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1362,"start":1335,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":500,"start":395,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":423,"start":382,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73}],"query_bed":[421,494],"query_length":73,"union_overlap_bases":73},"family":"coordinate_conversion","fingerprint":"fb855a5e5d5c30fe678196f959b4a75df225e4146ec4bd17485a9c2b509068b7","group_id":"fb855a5e5d5c30fe678196f959b4a75df225e4146ec4bd17485a9c2b509068b7","id":"INTERVALS-0006119","index":6119,"input":{"contigs":{"synthetic_A":1263,"synthetic_B":796},"features":[{"basis":"one_closed","contig":"synthetic_B","end":494,"start":422,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":60,"start":6,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":291,"start":256,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":118,"start":72,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":385,"start":294,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":379,"start":355,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":494,"start":422,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[107,112],"query_length":5,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"63061c6e82aa060761610d5a0dd950a060f8bf72bf8f00ad2399b0c59296f338","group_id":"63061c6e82aa060761610d5a0dd950a060f8bf72bf8f00ad2399b0c59296f338","id":"INTERVALS-0006125","index":6125,"input":{"contigs":{"synthetic_A":816,"synthetic_B":1432},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":107,"start":91,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":130,"start":112,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":180,"start":131,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":371,"start":353,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":324,"start":220,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":772,"start":732,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":891,"start":848,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1270,"start":1267,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":223,"start":170,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":131,"start":118,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":989,"start":965,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":112,"start":107,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":30}],"query_bed":[234,264],"query_length":30,"union_overlap_bases":30},"family":"stranded","fingerprint":"62b7feee48aaac0bf7fb5c4f5818ef00585b9a9130d7342861d71e1287f1c018","group_id":"62b7feee48aaac0bf7fb5c4f5818ef00585b9a9130d7342861d71e1287f1c018","id":"INTERVALS-0006128","index":6128,"input":{"contigs":{"synthetic_A":694,"synthetic_B":1227},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":264,"start":234,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":264,"start":234,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":736,"start":694,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":389,"start":282,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1085,"start":1045,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":284,"start":174,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":450,"start":399,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":891,"start":829,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":389,"start":342,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":538,"start":512,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":318,"start":222,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":274,"start":168,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":264,"start":234,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":8}],"query_bed":[1060,1068],"query_length":8,"union_overlap_bases":8},"family":"coordinate_conversion","fingerprint":"8ec3c982fde8b08bb901a578a0c111a0a0c68ee220ecd4238c3625599942b0dd","group_id":"8ec3c982fde8b08bb901a578a0c111a0a0c68ee220ecd4238c3625599942b0dd","id":"INTERVALS-0006129","index":6129,"input":{"contigs":{"synthetic_A":1270,"synthetic_B":1061},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1068,"start":1061,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":182,"start":91,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":558,"start":529,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":780,"start":721,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1005,"start":1000,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":921,"start":811,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":233,"start":212,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":394,"start":312,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":265,"start":160,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":975,"start":931,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1068,"start":1061,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":33},{"feature_index":5,"overlap_bases":23}],"query_bed":[163,196],"query_length":33,"union_overlap_bases":33},"family":"coordinate_conversion","fingerprint":"4375273c287f75cc790585b76837c1ce5c52aaceb0cae71045f7cbf981ecb7be","group_id":"4375273c287f75cc790585b76837c1ce5c52aaceb0cae71045f7cbf981ecb7be","id":"INTERVALS-0006144","index":6144,"input":{"contigs":{"synthetic_A":1052,"synthetic_B":1240},"features":[{"basis":"one_closed","contig":"synthetic_A","end":196,"start":164,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":307,"start":229,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1002,"start":906,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":353,"start":291,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":291,"start":227,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":283,"start":174,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":462,"start":391,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":682,"start":577,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":297,"start":224,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":619,"start":534,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":303,"start":252,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":800,"start":688,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":196,"start":164,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[392,400],"query_length":8,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"6a5acba4cadea933b5bec89ccabf8925737763ae39d1fb6186df1357355391b0","group_id":"6a5acba4cadea933b5bec89ccabf8925737763ae39d1fb6186df1357355391b0","id":"INTERVALS-0006150","index":6150,"input":{"contigs":{"synthetic_A":683,"synthetic_B":923},"features":[{"basis":"one_closed","contig":"synthetic_B","end":392,"start":391,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":435,"start":401,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":648,"start":536,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":509,"start":432,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":267,"start":187,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":125,"start":117,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":577,"start":493,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":352,"start":270,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":590,"start":587,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":228,"start":117,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":153,"start":138,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":400,"start":392,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":53}],"query_bed":[312,365],"query_length":53,"union_overlap_bases":53},"family":"coordinate_conversion","fingerprint":"cbab34028dbff52f7b8a96d8fe9b481d1dcf1efbf189104eed3f4d4f5173abd7","group_id":"cbab34028dbff52f7b8a96d8fe9b481d1dcf1efbf189104eed3f4d4f5173abd7","id":"INTERVALS-0006164","index":6164,"input":{"contigs":{"synthetic_A":823,"synthetic_B":1178},"features":[{"basis":"one_closed","contig":"synthetic_A","end":365,"start":313,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1010,"start":892,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":622,"start":529,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":604,"start":563,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":233,"start":161,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":466,"start":414,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":271,"start":181,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":237,"start":187,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":365,"start":313,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[400,473],"query_length":73,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"b233b26030fd59bcdefa6b23cc6d7ef167ff08416f1f89d05e4e9040be8b3180","group_id":"b233b26030fd59bcdefa6b23cc6d7ef167ff08416f1f89d05e4e9040be8b3180","id":"INTERVALS-0006165","index":6165,"input":{"contigs":{"synthetic_A":1792,"synthetic_B":1260},"features":[{"basis":"one_closed","contig":"synthetic_A","end":400,"start":383,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":508,"start":473,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":529,"start":491,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":217,"start":125,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":754,"start":657,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":473,"start":400,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":64},{"feature_index":2,"overlap_bases":2}],"query_bed":[133,198],"query_length":65,"union_overlap_bases":65},"family":"overlapping_blocks","fingerprint":"b49d9bf622c832582533194dca443a57bff5f25215f102d8c8d02b7bd28794d8","group_id":"b49d9bf622c832582533194dca443a57bff5f25215f102d8c8d02b7bd28794d8","id":"INTERVALS-0006172","index":6172,"input":{"contigs":{"synthetic_A":1664,"synthetic_B":819},"features":[{"basis":"one_closed","contig":"synthetic_B","end":136,"start":131,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":198,"start":134,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":201,"start":196,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1096,"start":1034,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1544,"start":1475,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1432,"start":1322,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":656,"start":557,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1230,"start":1185,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":118,"start":51,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":389,"start":295,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":598,"start":496,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1130,"start":1053,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":198,"start":133,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":24},{"feature_index":2,"overlap_bases":2}],"query_bed":[1110,1135],"query_length":25,"union_overlap_bases":25},"family":"overlapping_blocks","fingerprint":"35169f5e88ab8016d13f57c04f3284d818d9cb5b5606326a9ca2a96d4fdf57af","group_id":"35169f5e88ab8016d13f57c04f3284d818d9cb5b5606326a9ca2a96d4fdf57af","id":"INTERVALS-0006177","index":6177,"input":{"contigs":{"synthetic_A":1300,"synthetic_B":1370},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1113,"start":1108,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1135,"start":1111,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1138,"start":1133,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1045,"start":1042,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":477,"start":367,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1102,"start":1051,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":903,"start":826,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":566,"start":451,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":508,"start":480,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1160,"start":1122,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1135,"start":1111,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":70}],"query_bed":[343,413],"query_length":70,"union_overlap_bases":70},"family":"stranded","fingerprint":"d81fc2f2f2b8197d12446b04bd47f87e050947db81c90a30ab15d9b518fedb7e","group_id":"d81fc2f2f2b8197d12446b04bd47f87e050947db81c90a30ab15d9b518fedb7e","id":"INTERVALS-0006213","index":6213,"input":{"contigs":{"synthetic_A":1379,"synthetic_B":1023},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":413,"start":343,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":413,"start":344,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":864,"start":821,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1271,"start":1188,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":996,"start":978,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":173,"start":125,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":980,"start":902,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":413,"start":344,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":23},{"feature_index":1,"overlap_bases":21},{"feature_index":10,"overlap_bases":4}],"query_bed":[278,301],"query_length":23,"union_overlap_bases":23},"family":"nested","fingerprint":"70b5961462ab98c5779913c2aaba09e57d72ca35d6afe0c09896d55d38ada427","group_id":"70b5961462ab98c5779913c2aaba09e57d72ca35d6afe0c09896d55d38ada427","id":"INTERVALS-0006216","index":6216,"input":{"contigs":{"synthetic_A":1685,"synthetic_B":1597},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":306,"start":273,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":300,"start":280,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1527,"start":1431,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1585,"start":1504,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1324,"start":1274,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":527,"start":430,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1155,"start":1082,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1422,"start":1414,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":356,"start":248,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":413,"start":348,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":413,"start":297,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":301,"start":279,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":37}],"query_bed":[189,226],"query_length":37,"union_overlap_bases":37},"family":"stranded","fingerprint":"71421710357ad1b1b579cbc3ddc26f9c1a431a451d5986a8700c111dcca1651b","group_id":"71421710357ad1b1b579cbc3ddc26f9c1a431a451d5986a8700c111dcca1651b","id":"INTERVALS-0006218","index":6218,"input":{"contigs":{"synthetic_A":1241,"synthetic_B":982},"features":[{"basis":"one_closed","contig":"synthetic_A","end":226,"start":190,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":226,"start":189,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":297,"start":220,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":164,"start":153,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1152,"start":1101,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":837,"start":743,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":602,"start":594,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":853,"start":742,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":226,"start":189,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":41}],"query_bed":[139,180],"query_length":41,"union_overlap_bases":41},"family":"stranded","fingerprint":"f73fbd04886fe8a69902ef1b2b93efa1b6b8c4840281093a5da49cdb4f5fdf6b","group_id":"f73fbd04886fe8a69902ef1b2b93efa1b6b8c4840281093a5da49cdb4f5fdf6b","id":"INTERVALS-0006238","index":6238,"input":{"contigs":{"synthetic_A":1215,"synthetic_B":1767},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":180,"start":139,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":180,"start":140,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":609,"start":498,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":634,"start":539,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":784,"start":678,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":745,"start":693,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":235,"start":233,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1102,"start":1015,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":180,"start":139,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":28}],"query_bed":[298,326],"query_length":28,"union_overlap_bases":28},"family":"coordinate_conversion","fingerprint":"9a766276213998d94b6feae5391c10ea274ca65cb8c4b8c54adc3508ce5a734f","group_id":"9a766276213998d94b6feae5391c10ea274ca65cb8c4b8c54adc3508ce5a734f","id":"INTERVALS-0006244","index":6244,"input":{"contigs":{"synthetic_A":700,"synthetic_B":687},"features":[{"basis":"one_closed","contig":"synthetic_A","end":326,"start":299,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":569,"start":492,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":196,"start":95,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":531,"start":495,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":585,"start":535,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":171,"start":151,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":35,"start":32,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":281,"start":216,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":174,"start":150,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":545,"start":517,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":326,"start":299,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":50}],"query_bed":[535,585],"query_length":50,"union_overlap_bases":50},"family":"coordinate_conversion","fingerprint":"d6a09802ef83b63ad6a3098a7cc3625fb397b6fa37a97169bac397aaa1d2f7a4","group_id":"d6a09802ef83b63ad6a3098a7cc3625fb397b6fa37a97169bac397aaa1d2f7a4","id":"INTERVALS-0006254","index":6254,"input":{"contigs":{"synthetic_A":754,"synthetic_B":1033},"features":[{"basis":"one_closed","contig":"synthetic_B","end":585,"start":536,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":216,"start":163,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":566,"start":528,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":544,"start":495,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":443,"start":379,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":460,"start":350,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":585,"start":536,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":27},{"feature_index":4,"overlap_bases":9}],"query_bed":[967,994],"query_length":27,"union_overlap_bases":27},"family":"coordinate_conversion","fingerprint":"b782ceea0e26d96b07c27c6f8000acadf9f6b7472558327a6065c66fe863a14c","group_id":"b782ceea0e26d96b07c27c6f8000acadf9f6b7472558327a6065c66fe863a14c","id":"INTERVALS-0006279","index":6279,"input":{"contigs":{"synthetic_A":1361,"synthetic_B":731},"features":[{"basis":"one_closed","contig":"synthetic_A","end":994,"start":968,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":620,"start":521,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":280,"start":195,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":261,"start":253,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":996,"start":986,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":165,"start":64,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":562,"start":504,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":994,"start":968,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":17}],"query_bed":[1095,1112],"query_length":17,"union_overlap_bases":17},"family":"stranded","fingerprint":"0be007d863447e762888a2cbdc70a9244790abe0a6ba6fd586ce85235b5c2ca1","group_id":"0be007d863447e762888a2cbdc70a9244790abe0a6ba6fd586ce85235b5c2ca1","id":"INTERVALS-0006288","index":6288,"input":{"contigs":{"synthetic_A":1295,"synthetic_B":755},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1112,"start":1095,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1112,"start":1095,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":399,"start":306,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":204,"start":140,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":298,"start":206,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1037,"start":1030,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":102,"start":91,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1112,"start":1096,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":69},{"feature_index":2,"overlap_bases":2}],"query_bed":[442,512],"query_length":70,"union_overlap_bases":70},"family":"overlapping_blocks","fingerprint":"d31c8a6000b1c190a9e3e43e7afbcfc1b90958304c0a3872811f2c0f3b3afcb7","group_id":"d31c8a6000b1c190a9e3e43e7afbcfc1b90958304c0a3872811f2c0f3b3afcb7","id":"INTERVALS-0006297","index":6297,"input":{"contigs":{"synthetic_A":994,"synthetic_B":1033},"features":[{"basis":"one_closed","contig":"synthetic_A","end":445,"start":440,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":512,"start":443,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":515,"start":511,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":883,"start":844,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":549,"start":535,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":675,"start":669,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":372,"start":342,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":341,"start":302,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":256,"start":145,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":844,"start":796,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":627,"start":618,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":512,"start":443,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":58}],"query_bed":[270,328],"query_length":58,"union_overlap_bases":58},"family":"stranded","fingerprint":"c9838530023b52f3fd9cb3235fb45447c234d4021d32bcd5d306317b813d6388","group_id":"c9838530023b52f3fd9cb3235fb45447c234d4021d32bcd5d306317b813d6388","id":"INTERVALS-0006303","index":6303,"input":{"contigs":{"synthetic_A":1421,"synthetic_B":611},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":328,"start":270,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":328,"start":271,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":533,"start":461,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":138,"start":85,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":318,"start":205,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":105,"start":49,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":225,"start":183,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":37,"start":0,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":561,"start":476,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":56,"start":38,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":328,"start":270,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":71}],"query_bed":[378,449],"query_length":71,"union_overlap_bases":71},"family":"coordinate_conversion","fingerprint":"b5f9319a4a04536542e32a4f48490e8f9f045f6b07b663db562d7c42583ff523","group_id":"b5f9319a4a04536542e32a4f48490e8f9f045f6b07b663db562d7c42583ff523","id":"INTERVALS-0006304","index":6304,"input":{"contigs":{"synthetic_A":1745,"synthetic_B":818},"features":[{"basis":"one_closed","contig":"synthetic_B","end":449,"start":379,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":111,"start":49,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":280,"start":167,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":401,"start":367,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":189,"start":179,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":731,"start":627,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1173,"start":1168,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":254,"start":190,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":959,"start":841,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":228,"start":224,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1346,"start":1231,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":764,"start":715,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":449,"start":379,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":21}],"query_bed":[966,987],"query_length":21,"union_overlap_bases":21},"family":"stranded","fingerprint":"05a03e42f84f250a29c0c6de63af71de792d72e0e6cd7487d2d599c444a7806c","group_id":"05a03e42f84f250a29c0c6de63af71de792d72e0e6cd7487d2d599c444a7806c","id":"INTERVALS-0006308","index":6308,"input":{"contigs":{"synthetic_A":965,"synthetic_B":1382},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":987,"start":966,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":987,"start":966,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":796,"start":773,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":106,"start":40,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":764,"start":679,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":987,"start":967,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":41}],"query_bed":[292,333],"query_length":41,"union_overlap_bases":41},"family":"coordinate_conversion","fingerprint":"f93523f6718f6f653191ff64ba0dea598ecf6a0024faa5168ba7fa57c502fa04","group_id":"f93523f6718f6f653191ff64ba0dea598ecf6a0024faa5168ba7fa57c502fa04","id":"INTERVALS-0006309","index":6309,"input":{"contigs":{"synthetic_A":1725,"synthetic_B":1764},"features":[{"basis":"one_closed","contig":"synthetic_B","end":333,"start":293,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1583,"start":1561,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":440,"start":350,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1488,"start":1414,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":155,"start":145,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1505,"start":1444,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":82,"start":67,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":333,"start":293,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":19},{"feature_index":1,"overlap_bases":17}],"query_bed":[40,59],"query_length":19,"union_overlap_bases":19},"family":"nested","fingerprint":"4d35c57e0f30374d98bc4cddbdd0d2266b983d16b28fd98ff7707fb0cc88f54e","group_id":"4d35c57e0f30374d98bc4cddbdd0d2266b983d16b28fd98ff7707fb0cc88f54e","id":"INTERVALS-0006316","index":6316,"input":{"contigs":{"synthetic_A":676,"synthetic_B":855},"features":[{"basis":"one_closed","contig":"synthetic_A","end":64,"start":36,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":58,"start":42,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":735,"start":633,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":199,"start":198,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":115,"start":59,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":701,"start":678,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":547,"start":525,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":17,"start":15,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":448,"start":371,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":363,"start":350,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":449,"start":339,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":641,"start":527,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":59,"start":40,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[269,274],"query_length":5,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"188d6124e325cb39c6b1c728162b25e79e719970bb26fb47b7e5b3864a7445e6","group_id":"188d6124e325cb39c6b1c728162b25e79e719970bb26fb47b7e5b3864a7445e6","id":"INTERVALS-0006330","index":6330,"input":{"contigs":{"synthetic_A":1415,"synthetic_B":1191},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":269,"start":265,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":279,"start":274,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":746,"start":708,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":479,"start":446,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1069,"start":997,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":274,"start":270,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":72},{"feature_index":1,"overlap_bases":70}],"query_bed":[396,468],"query_length":72,"union_overlap_bases":72},"family":"nested","fingerprint":"a48bf7c62451c2ddb4769c781bf4a9b6ffcb1766016174337cd232705c5ae2e4","group_id":"a48bf7c62451c2ddb4769c781bf4a9b6ffcb1766016174337cd232705c5ae2e4","id":"INTERVALS-0006331","index":6331,"input":{"contigs":{"synthetic_A":693,"synthetic_B":771},"features":[{"basis":"one_closed","contig":"synthetic_A","end":473,"start":392,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":467,"start":398,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":511,"start":444,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":240,"start":220,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":631,"start":518,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":468,"start":396,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":78},{"feature_index":6,"overlap_bases":78}],"query_bed":[399,477],"query_length":78,"union_overlap_bases":78},"family":"stranded","fingerprint":"dd9b6d1cef798d0539dd354897aa1fe58282ea6e2cabf9ba9fc8dcd8fa0324a1","group_id":"dd9b6d1cef798d0539dd354897aa1fe58282ea6e2cabf9ba9fc8dcd8fa0324a1","id":"INTERVALS-0006333","index":6333,"input":{"contigs":{"synthetic_A":1744,"synthetic_B":707},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":477,"start":399,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":477,"start":400,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":811,"start":797,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":275,"start":164,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":795,"start":707,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":162,"start":52,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":488,"start":389,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1556,"start":1458,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":477,"start":400,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":77},{"feature_index":7,"overlap_bases":66}],"query_bed":[495,572],"query_length":77,"union_overlap_bases":77},"family":"coordinate_conversion","fingerprint":"037cae3e4d6d9e6013a49e72a51118195f775b2474f551ad9a6b90bc3112cfcc","group_id":"037cae3e4d6d9e6013a49e72a51118195f775b2474f551ad9a6b90bc3112cfcc","id":"INTERVALS-0006344","index":6344,"input":{"contigs":{"synthetic_A":1246,"synthetic_B":864},"features":[{"basis":"one_closed","contig":"synthetic_B","end":572,"start":496,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":125,"start":53,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":434,"start":368,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":494,"start":475,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":174,"start":80,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":231,"start":152,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":477,"start":443,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":561,"start":454,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":940,"start":864,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":572,"start":496,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":8}],"query_bed":[638,646],"query_length":8,"union_overlap_bases":8},"family":"stranded","fingerprint":"18cf8838691ea96b60d8eb5b60fa14cccbfd061c7a830bb573501aa1ef978ead","group_id":"18cf8838691ea96b60d8eb5b60fa14cccbfd061c7a830bb573501aa1ef978ead","id":"INTERVALS-0006368","index":6368,"input":{"contigs":{"synthetic_A":1099,"synthetic_B":1126},"features":[{"basis":"one_closed","contig":"synthetic_A","end":646,"start":639,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":646,"start":638,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":392,"start":352,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":590,"start":559,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":608,"start":557,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":204,"start":180,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":634,"start":549,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":393,"start":329,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":646,"start":638,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":57}],"query_bed":[274,331],"query_length":57,"union_overlap_bases":57},"family":"stranded","fingerprint":"2cce5af884e89e0d4c6a4a749e8c06a4efe6c8c43643198d84ffe2f128274c62","group_id":"2cce5af884e89e0d4c6a4a749e8c06a4efe6c8c43643198d84ffe2f128274c62","id":"INTERVALS-0006383","index":6383,"input":{"contigs":{"synthetic_A":1016,"synthetic_B":1106},"features":[{"basis":"one_closed","contig":"synthetic_B","end":331,"start":275,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":331,"start":275,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":133,"start":40,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":818,"start":787,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":346,"start":265,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":868,"start":766,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1072,"start":963,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":843,"start":779,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":119,"start":96,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":865,"start":786,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":819,"start":798,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":331,"start":274,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[186,220],"query_length":34,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"c6bbe0d6dc24a39dfca265f651ad015652777463c0c948e4d0833c70b612042a","group_id":"c6bbe0d6dc24a39dfca265f651ad015652777463c0c948e4d0833c70b612042a","id":"INTERVALS-0006385","index":6385,"input":{"contigs":{"synthetic_A":1327,"synthetic_B":836},"features":[{"basis":"one_closed","contig":"synthetic_B","end":186,"start":178,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":242,"start":220,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":169,"start":51,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":933,"start":928,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":98,"start":11,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":334,"start":323,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":319,"start":316,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":126,"start":48,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":846,"start":768,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":928,"start":899,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":220,"start":187,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[143,212],"query_length":69,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"1a30a37e349a2c3ff52d6b0d186923cc601e0330e880ccb577cac2a6134d3cb1","group_id":"1a30a37e349a2c3ff52d6b0d186923cc601e0330e880ccb577cac2a6134d3cb1","id":"INTERVALS-0006400","index":6400,"input":{"contigs":{"synthetic_A":1101,"synthetic_B":919},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":143,"start":132,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":240,"start":213,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":235,"start":190,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":264,"start":154,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":598,"start":492,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":928,"start":841,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":533,"start":420,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":306,"start":244,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":395,"start":331,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":229,"start":219,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":627,"start":550,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":470,"start":441,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":212,"start":144,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":34}],"query_bed":[94,128],"query_length":34,"union_overlap_bases":34},"family":"stranded","fingerprint":"d3399b1e6872fa289cbb198e07edd0336db917c3548ba29d1c681ff31491076f","group_id":"d3399b1e6872fa289cbb198e07edd0336db917c3548ba29d1c681ff31491076f","id":"INTERVALS-0006418","index":6418,"input":{"contigs":{"synthetic_A":1527,"synthetic_B":604},"features":[{"basis":"one_closed","contig":"synthetic_B","end":128,"start":95,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":128,"start":94,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":335,"start":283,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":232,"start":151,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":965,"start":945,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":372,"start":284,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":341,"start":232,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":329,"start":245,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":128,"start":94,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":40},{"feature_index":2,"overlap_bases":2}],"query_bed":[675,716],"query_length":41,"union_overlap_bases":41},"family":"overlapping_blocks","fingerprint":"03db2ee6611298f87fbeec5c0bd521f3cb1c0d1fee845e2345ee68cb96da9083","group_id":"03db2ee6611298f87fbeec5c0bd521f3cb1c0d1fee845e2345ee68cb96da9083","id":"INTERVALS-0006422","index":6422,"input":{"contigs":{"synthetic_A":815,"synthetic_B":1481},"features":[{"basis":"one_closed","contig":"synthetic_B","end":678,"start":673,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":716,"start":676,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":719,"start":714,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":181,"start":154,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":426,"start":328,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":264,"start":262,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":949,"start":903,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":950,"start":909,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":716,"start":676,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":10}],"query_bed":[268,278],"query_length":10,"union_overlap_bases":10},"family":"stranded","fingerprint":"028a33de790a0e1ae0d9e7b355aee0e33b79b9ad0c417111a4530564b08dfe13","group_id":"028a33de790a0e1ae0d9e7b355aee0e33b79b9ad0c417111a4530564b08dfe13","id":"INTERVALS-0006438","index":6438,"input":{"contigs":{"synthetic_A":643,"synthetic_B":1185},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":278,"start":268,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":278,"start":268,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":171,"start":137,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":264,"start":221,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":576,"start":570,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":278,"start":268,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":6},{"feature_index":2,"overlap_bases":6}],"query_bed":[130,136],"query_length":6,"union_overlap_bases":6},"family":"coordinate_conversion","fingerprint":"a0ff3faacec31414aef99acfc717d54a65c41843c52537ac21137435acde9215","group_id":"a0ff3faacec31414aef99acfc717d54a65c41843c52537ac21137435acde9215","id":"INTERVALS-0006469","index":6469,"input":{"contigs":{"synthetic_A":765,"synthetic_B":644},"features":[{"basis":"one_closed","contig":"synthetic_B","end":136,"start":131,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":266,"start":179,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":142,"start":104,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":418,"start":417,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":685,"start":586,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":545,"start":483,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":544,"start":494,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":536,"start":429,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":136,"start":131,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":24},{"feature_index":2,"overlap_bases":2}],"query_bed":[1333,1358],"query_length":25,"union_overlap_bases":25},"family":"overlapping_blocks","fingerprint":"ee91e6d2a232f9c4eea39203085c50f2d7f2863d2372de4f7bb730bd66a013e1","group_id":"ee91e6d2a232f9c4eea39203085c50f2d7f2863d2372de4f7bb730bd66a013e1","id":"INTERVALS-0006472","index":6472,"input":{"contigs":{"synthetic_A":1766,"synthetic_B":1263},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1336,"start":1331,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1358,"start":1335,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1361,"start":1356,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1311,"start":1197,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":921,"start":887,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1358,"start":1334,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":68},{"feature_index":2,"overlap_bases":2}],"query_bed":[370,439],"query_length":69,"union_overlap_bases":69},"family":"overlapping_blocks","fingerprint":"60b1c42c5fce5e97dd5f1ff247b25f7838f12f8c7e774d1646415754f50a9b22","group_id":"60b1c42c5fce5e97dd5f1ff247b25f7838f12f8c7e774d1646415754f50a9b22","id":"INTERVALS-0006507","index":6507,"input":{"contigs":{"synthetic_A":1434,"synthetic_B":751},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":373,"start":367,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":439,"start":371,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":442,"start":437,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":862,"start":816,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":246,"start":204,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":423,"start":381,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1404,"start":1285,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":374,"start":340,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1369,"start":1273,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":439,"start":370,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":12}],"query_bed":[737,749],"query_length":12,"union_overlap_bases":12},"family":"coordinate_conversion","fingerprint":"7d85b25c56e16c2a8e459ff162382fa94a0f9529dad652f6b1cad6a7f3ca3f7b","group_id":"7d85b25c56e16c2a8e459ff162382fa94a0f9529dad652f6b1cad6a7f3ca3f7b","id":"INTERVALS-0006509","index":6509,"input":{"contigs":{"synthetic_A":1257,"synthetic_B":1646},"features":[{"basis":"one_closed","contig":"synthetic_A","end":749,"start":738,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1122,"start":1003,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":974,"start":893,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1163,"start":1057,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1291,"start":1286,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1041,"start":1040,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":749,"start":738,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":17},{"feature_index":1,"overlap_bases":15}],"query_bed":[285,302],"query_length":17,"union_overlap_bases":17},"family":"nested","fingerprint":"d0d64cb43a3a0334a166888314c615d21df5131666b8643f08e948163802568e","group_id":"d0d64cb43a3a0334a166888314c615d21df5131666b8643f08e948163802568e","id":"INTERVALS-0006516","index":6516,"input":{"contigs":{"synthetic_A":1087,"synthetic_B":837},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":307,"start":280,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":301,"start":287,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":354,"start":248,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":505,"start":460,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":689,"start":607,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":512,"start":441,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":158,"start":141,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":302,"start":286,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":38}],"query_bed":[242,280],"query_length":38,"union_overlap_bases":38},"family":"coordinate_conversion","fingerprint":"2111f4c233c5f7502f73c0ee97541650af102670f9ed756da85abb4caae5ba9c","group_id":"2111f4c233c5f7502f73c0ee97541650af102670f9ed756da85abb4caae5ba9c","id":"INTERVALS-0006519","index":6519,"input":{"contigs":{"synthetic_A":1570,"synthetic_B":917},"features":[{"basis":"one_closed","contig":"synthetic_B","end":280,"start":243,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1342,"start":1278,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":353,"start":342,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":238,"start":237,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":671,"start":626,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":773,"start":719,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":136,"start":51,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":280,"start":243,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":64},{"feature_index":1,"overlap_bases":62}],"query_bed":[61,125],"query_length":64,"union_overlap_bases":64},"family":"nested","fingerprint":"746cde025e723a88153eede589d76bc57afcc1712939aa0ac7d456a83cded56d","group_id":"746cde025e723a88153eede589d76bc57afcc1712939aa0ac7d456a83cded56d","id":"INTERVALS-0006571","index":6571,"input":{"contigs":{"synthetic_A":1388,"synthetic_B":829},"features":[{"basis":"one_closed","contig":"synthetic_B","end":130,"start":57,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":124,"start":63,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":340,"start":276,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":351,"start":288,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":194,"start":183,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1187,"start":1126,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":446,"start":380,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":321,"start":317,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":499,"start":393,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":345,"start":330,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":125,"start":61,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":73}],"query_bed":[464,537],"query_length":73,"union_overlap_bases":73},"family":"stranded","fingerprint":"4550473ae4fd49c571a0f115e8ab42c7408b4829e879102bf63790bb65e3f6d1","group_id":"4550473ae4fd49c571a0f115e8ab42c7408b4829e879102bf63790bb65e3f6d1","id":"INTERVALS-0006578","index":6578,"input":{"contigs":{"synthetic_A":1192,"synthetic_B":722},"features":[{"basis":"one_closed","contig":"synthetic_B","end":537,"start":465,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":537,"start":465,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":381,"start":269,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":563,"start":561,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":191,"start":153,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":891,"start":838,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":108,"start":73,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":452,"start":424,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":365,"start":363,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":393,"start":375,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":509,"start":446,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":248,"start":200,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":537,"start":465,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":48}],"query_bed":[137,185],"query_length":48,"union_overlap_bases":48},"family":"stranded","fingerprint":"4f27344ec8b667e68e78ad7a57cf8bc0f339efc3c50efc1de7ca1df1108f203c","group_id":"4f27344ec8b667e68e78ad7a57cf8bc0f339efc3c50efc1de7ca1df1108f203c","id":"INTERVALS-0006583","index":6583,"input":{"contigs":{"synthetic_A":1136,"synthetic_B":1077},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":185,"start":137,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":185,"start":138,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":663,"start":573,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1034,"start":973,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":300,"start":234,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":459,"start":418,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":742,"start":740,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":287,"start":220,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":812,"start":762,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":902,"start":825,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":363,"start":258,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":185,"start":138,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":23},{"feature_index":2,"overlap_bases":2}],"query_bed":[1323,1347],"query_length":24,"union_overlap_bases":24},"family":"overlapping_blocks","fingerprint":"310658be22f8388a739f3f5e6c3cfd541b1de76084af331a8b80362f0c4156f4","group_id":"310658be22f8388a739f3f5e6c3cfd541b1de76084af331a8b80362f0c4156f4","id":"INTERVALS-0006587","index":6587,"input":{"contigs":{"synthetic_A":1697,"synthetic_B":1220},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1326,"start":1321,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1347,"start":1325,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1350,"start":1345,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":510,"start":426,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1587,"start":1541,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1588,"start":1512,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1066,"start":958,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1480,"start":1432,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1112,"start":1003,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":296,"start":205,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":941,"start":845,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":362,"start":344,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1347,"start":1323,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":76}],"query_bed":[518,594],"query_length":76,"union_overlap_bases":76},"family":"stranded","fingerprint":"2023c194ab45474c92b888e82b647a2c6edcc7a68a85ab559c214fa3a39e6504","group_id":"2023c194ab45474c92b888e82b647a2c6edcc7a68a85ab559c214fa3a39e6504","id":"INTERVALS-0006598","index":6598,"input":{"contigs":{"synthetic_A":1421,"synthetic_B":678},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":594,"start":518,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":594,"start":519,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":386,"start":296,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1006,"start":930,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":99,"start":7,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1143,"start":1100,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":808,"start":761,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":594,"start":519,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":62},{"feature_index":1,"overlap_bases":60},{"feature_index":7,"overlap_bases":6}],"query_bed":[553,615],"query_length":62,"union_overlap_bases":62},"family":"nested","fingerprint":"83ef246690eb6215a31e9733a3f80a40709deadb13b9fb4b967c89362b577b42","group_id":"83ef246690eb6215a31e9733a3f80a40709deadb13b9fb4b967c89362b577b42","id":"INTERVALS-0006611","index":6611,"input":{"contigs":{"synthetic_A":1050,"synthetic_B":720},"features":[{"basis":"one_closed","contig":"synthetic_A","end":620,"start":549,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":614,"start":555,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":444,"start":406,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":91,"start":42,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":584,"start":541,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":815,"start":737,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":864,"start":836,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":559,"start":449,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":613,"start":596,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":327,"start":276,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":368,"start":261,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":441,"start":326,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":615,"start":553,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[59,107],"query_length":48,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"7769749e17cd6a38977f17508ebe196b48d079160f3f2586b8b49c39e769436b","group_id":"7769749e17cd6a38977f17508ebe196b48d079160f3f2586b8b49c39e769436b","id":"INTERVALS-0006625","index":6625,"input":{"contigs":{"synthetic_A":1229,"synthetic_B":1647},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":59,"start":40,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":140,"start":108,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":759,"start":725,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":589,"start":552,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1318,"start":1304,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":852,"start":842,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":294,"start":280,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":968,"start":938,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":107,"start":59,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[331,349],"query_length":18,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"f59776ea9ba25a8c3dbd4c4381e4faa1141ca9808d0d5876833d302c4ddaaf22","group_id":"f59776ea9ba25a8c3dbd4c4381e4faa1141ca9808d0d5876833d302c4ddaaf22","id":"INTERVALS-0006645","index":6645,"input":{"contigs":{"synthetic_A":849,"synthetic_B":1112},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":331,"start":327,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":385,"start":349,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":205,"start":107,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":568,"start":473,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":51,"start":45,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":584,"start":500,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":430,"start":317,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":58,"start":17,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":87,"start":51,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":349,"start":332,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":55},{"feature_index":2,"overlap_bases":2}],"query_bed":[603,659],"query_length":56,"union_overlap_bases":56},"family":"overlapping_blocks","fingerprint":"f8b5022ac4e8a5fd6ee2a39f311ed52678d8736f1c1695d6ca45ea6af4c09f8b","group_id":"f8b5022ac4e8a5fd6ee2a39f311ed52678d8736f1c1695d6ca45ea6af4c09f8b","id":"INTERVALS-0006652","index":6652,"input":{"contigs":{"synthetic_A":855,"synthetic_B":1252},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":606,"start":600,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":659,"start":605,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":662,"start":658,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":524,"start":471,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":192,"start":80,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":487,"start":478,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":659,"start":604,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":13},{"feature_index":2,"overlap_bases":2}],"query_bed":[183,197],"query_length":14,"union_overlap_bases":14},"family":"overlapping_blocks","fingerprint":"752ff2acbd32f987a84ec3a6f748011d185ce860e4d122dd7f86cc5baf7d3d5d","group_id":"752ff2acbd32f987a84ec3a6f748011d185ce860e4d122dd7f86cc5baf7d3d5d","id":"INTERVALS-0006662","index":6662,"input":{"contigs":{"synthetic_A":1159,"synthetic_B":1777},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":186,"start":180,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":197,"start":185,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":200,"start":195,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":983,"start":968,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":892,"start":874,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":197,"start":184,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":40},{"feature_index":2,"overlap_bases":2}],"query_bed":[48,89],"query_length":41,"union_overlap_bases":41},"family":"overlapping_blocks","fingerprint":"f37ea842eb3c0f7e240b7b461f20e868529d3c1938c8564573100e86b25b8936","group_id":"f37ea842eb3c0f7e240b7b461f20e868529d3c1938c8564573100e86b25b8936","id":"INTERVALS-0006682","index":6682,"input":{"contigs":{"synthetic_A":1452,"synthetic_B":1503},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":51,"start":45,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":89,"start":50,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":92,"start":88,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":355,"start":251,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1253,"start":1154,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":668,"start":638,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":570,"start":517,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":389,"start":271,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":934,"start":850,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":810,"start":774,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":255,"start":147,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":89,"start":49,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":76},{"feature_index":1,"overlap_bases":74},{"feature_index":6,"overlap_bases":76}],"query_bed":[142,218],"query_length":76,"union_overlap_bases":76},"family":"nested","fingerprint":"06be86a80ef43ce8da35103dbfe918ac7a888f8837746d10b35c4089fea29d96","group_id":"06be86a80ef43ce8da35103dbfe918ac7a888f8837746d10b35c4089fea29d96","id":"INTERVALS-0006691","index":6691,"input":{"contigs":{"synthetic_A":1425,"synthetic_B":993},"features":[{"basis":"one_closed","contig":"synthetic_A","end":223,"start":138,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":217,"start":144,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":609,"start":590,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":445,"start":377,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":253,"start":191,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":715,"start":711,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":235,"start":129,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":616,"start":566,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":218,"start":143,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[326,403],"query_length":77,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"011e9cec4a271aa4bb71c044b9c81e144314548ad6ae260c2f26284405d2621d","group_id":"011e9cec4a271aa4bb71c044b9c81e144314548ad6ae260c2f26284405d2621d","id":"INTERVALS-0006705","index":6705,"input":{"contigs":{"synthetic_A":906,"synthetic_B":1059},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":326,"start":324,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":425,"start":403,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":527,"start":465,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":692,"start":602,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":93,"start":31,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":138,"start":126,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":471,"start":406,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":429,"start":415,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":277,"start":225,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":824,"start":785,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":403,"start":326,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":63},{"feature_index":1,"overlap_bases":61}],"query_bed":[266,329],"query_length":63,"union_overlap_bases":63},"family":"nested","fingerprint":"02c1d7d03dbb012d7fa347165c9116f54a3ad6f2f848826fea062fcb7e99b52b","group_id":"02c1d7d03dbb012d7fa347165c9116f54a3ad6f2f848826fea062fcb7e99b52b","id":"INTERVALS-0006706","index":6706,"input":{"contigs":{"synthetic_A":855,"synthetic_B":1318},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":334,"start":261,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":328,"start":267,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":551,"start":469,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":78,"start":20,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":427,"start":385,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":826,"start":714,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":644,"start":621,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":161,"start":113,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":609,"start":609,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":258,"start":165,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":329,"start":266,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":47},{"feature_index":2,"overlap_bases":2},{"feature_index":9,"overlap_bases":26}],"query_bed":[429,477],"query_length":48,"union_overlap_bases":48},"family":"overlapping_blocks","fingerprint":"f141b722aa0348527f3fb2ba4a14ec3c9164b8552537ea477dff7af65acf9f9c","group_id":"f141b722aa0348527f3fb2ba4a14ec3c9164b8552537ea477dff7af65acf9f9c","id":"INTERVALS-0006707","index":6707,"input":{"contigs":{"synthetic_A":902,"synthetic_B":776},"features":[{"basis":"one_closed","contig":"synthetic_B","end":432,"start":427,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":477,"start":431,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":480,"start":475,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":349,"start":333,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":73,"start":62,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":558,"start":528,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":600,"start":527,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":375,"start":373,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":729,"start":717,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":455,"start":385,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":477,"start":429,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[378,413],"query_length":35,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"cb387e8a4e288ba20e90a2ee27b20e6cb44e9e79dface9024e833da26ce74141","group_id":"cb387e8a4e288ba20e90a2ee27b20e6cb44e9e79dface9024e833da26ce74141","id":"INTERVALS-0006720","index":6720,"input":{"contigs":{"synthetic_A":1563,"synthetic_B":1099},"features":[{"basis":"one_closed","contig":"synthetic_B","end":378,"start":370,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":437,"start":413,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":686,"start":637,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":583,"start":545,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":948,"start":899,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":346,"start":278,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":146,"start":35,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":413,"start":379,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":67}],"query_bed":[878,945],"query_length":67,"union_overlap_bases":67},"family":"coordinate_conversion","fingerprint":"c4c672c86f19640797d758b375486212d34f86777299ec213b7ac71c609e9356","group_id":"c4c672c86f19640797d758b375486212d34f86777299ec213b7ac71c609e9356","id":"INTERVALS-0006729","index":6729,"input":{"contigs":{"synthetic_A":1396,"synthetic_B":612},"features":[{"basis":"one_closed","contig":"synthetic_A","end":945,"start":879,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":605,"start":516,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":175,"start":174,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1264,"start":1153,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":89,"start":53,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":193,"start":97,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1151,"start":1136,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":296,"start":236,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":852,"start":756,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":250,"start":215,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1380,"start":1264,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":305,"start":293,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":945,"start":879,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":3,"overlap_bases":51}],"query_bed":[472,532],"query_length":60,"union_overlap_bases":51},"family":"touching_boundary","fingerprint":"a7c59d2aad256fe3da3a63685c0887cf8b6e39063b27efade831229fc9b27d92","group_id":"a7c59d2aad256fe3da3a63685c0887cf8b6e39063b27efade831229fc9b27d92","id":"INTERVALS-0006735","index":6735,"input":{"contigs":{"synthetic_A":874,"synthetic_B":1349},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":472,"start":466,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":560,"start":533,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":286,"start":285,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":523,"start":437,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1035,"start":962,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":532,"start":473,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[526,591],"query_length":65,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"22eda67481d10698674aa6fec9868aa42b1372128e2483f020df0d20eb44be60","group_id":"22eda67481d10698674aa6fec9868aa42b1372128e2483f020df0d20eb44be60","id":"INTERVALS-0006740","index":6740,"input":{"contigs":{"synthetic_A":620,"synthetic_B":1261},"features":[{"basis":"one_closed","contig":"synthetic_B","end":526,"start":523,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":630,"start":591,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":197,"start":178,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":80,"start":52,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1070,"start":1003,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":403,"start":355,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":519,"start":411,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":677,"start":670,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":432,"start":398,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":179,"start":77,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":591,"start":526,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":36},{"feature_index":2,"overlap_bases":2}],"query_bed":[687,724],"query_length":37,"union_overlap_bases":37},"family":"overlapping_blocks","fingerprint":"f6abf4020b5cda5e88e492b2756b1f5751dd814a45e70f4217b0ddf055c633f8","group_id":"f6abf4020b5cda5e88e492b2756b1f5751dd814a45e70f4217b0ddf055c633f8","id":"INTERVALS-0006742","index":6742,"input":{"contigs":{"synthetic_A":1070,"synthetic_B":1125},"features":[{"basis":"one_closed","contig":"synthetic_A","end":690,"start":685,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":724,"start":689,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":727,"start":722,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":649,"start":647,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":539,"start":538,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":836,"start":800,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":136,"start":118,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1014,"start":1005,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":154,"start":42,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":724,"start":687,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":47}],"query_bed":[462,509],"query_length":47,"union_overlap_bases":47},"family":"coordinate_conversion","fingerprint":"84feb7cc0cb4758a303c5cf6a52d5ca1ed0e62554331d3ee2ec71ac96dde62c4","group_id":"84feb7cc0cb4758a303c5cf6a52d5ca1ed0e62554331d3ee2ec71ac96dde62c4","id":"INTERVALS-0006749","index":6749,"input":{"contigs":{"synthetic_A":713,"synthetic_B":776},"features":[{"basis":"one_closed","contig":"synthetic_A","end":509,"start":463,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":457,"start":423,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":595,"start":515,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":632,"start":525,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":403,"start":293,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":432,"start":378,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":421,"start":357,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":56,"start":40,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":642,"start":578,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":509,"start":463,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":41},{"feature_index":2,"overlap_bases":2}],"query_bed":[466,508],"query_length":42,"union_overlap_bases":42},"family":"overlapping_blocks","fingerprint":"7b1c7b0e424b11346d533f5369b45caea45991c069f3ed9807c8dacc47bc7381","group_id":"7b1c7b0e424b11346d533f5369b45caea45991c069f3ed9807c8dacc47bc7381","id":"INTERVALS-0006757","index":6757,"input":{"contigs":{"synthetic_A":884,"synthetic_B":1765},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":469,"start":463,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":508,"start":468,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":511,"start":507,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":193,"start":157,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":111,"start":95,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":525,"start":487,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":584,"start":546,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":395,"start":342,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":692,"start":646,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":823,"start":769,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":286,"start":180,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":508,"start":467,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[413,454],"query_length":41,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"a8abdea2a8aa2f0dfc6c78f82f4645d78aa5f49bfdb58da4be0a60ec9745f7f8","group_id":"a8abdea2a8aa2f0dfc6c78f82f4645d78aa5f49bfdb58da4be0a60ec9745f7f8","id":"INTERVALS-0006775","index":6775,"input":{"contigs":{"synthetic_A":1119,"synthetic_B":872},"features":[{"basis":"one_closed","contig":"synthetic_B","end":413,"start":402,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":473,"start":455,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":98,"start":94,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":562,"start":457,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":139,"start":32,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1112,"start":998,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":522,"start":441,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":141,"start":129,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":846,"start":752,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":90,"start":25,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":454,"start":413,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":77},{"feature_index":1,"overlap_bases":75}],"query_bed":[376,453],"query_length":77,"union_overlap_bases":77},"family":"nested","fingerprint":"7a7821d0ffbe9dd3011975a10b55d99c890aaf9da34fb8ec4089278c1d8d4443","group_id":"7a7821d0ffbe9dd3011975a10b55d99c890aaf9da34fb8ec4089278c1d8d4443","id":"INTERVALS-0006776","index":6776,"input":{"contigs":{"synthetic_A":650,"synthetic_B":1062},"features":[{"basis":"one_closed","contig":"synthetic_B","end":458,"start":372,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":452,"start":378,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":364,"start":254,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":54,"start":3,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":853,"start":755,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":347,"start":270,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":255,"start":165,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":33,"start":17,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":469,"start":462,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":138,"start":129,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":466,"start":368,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":193,"start":144,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":453,"start":377,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":27}],"query_bed":[565,592],"query_length":27,"union_overlap_bases":27},"family":"stranded","fingerprint":"f41d1f0ee0e0e0d5da97abf2a2563e7ba538e99f67ef7bb9734eb2fcc3eb1da5","group_id":"f41d1f0ee0e0e0d5da97abf2a2563e7ba538e99f67ef7bb9734eb2fcc3eb1da5","id":"INTERVALS-0006778","index":6778,"input":{"contigs":{"synthetic_A":1309,"synthetic_B":1695},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":592,"start":565,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":592,"start":566,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":333,"start":296,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":549,"start":516,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":349,"start":313,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1078,"start":972,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":195,"start":178,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":824,"start":788,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":828,"start":732,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":542,"start":503,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":592,"start":565,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":19}],"query_bed":[66,85],"query_length":19,"union_overlap_bases":19},"family":"coordinate_conversion","fingerprint":"9b9466da7cb978aad7b08bcab743ee4c987685f81b51c910f419b40dfe474b74","group_id":"9b9466da7cb978aad7b08bcab743ee4c987685f81b51c910f419b40dfe474b74","id":"INTERVALS-0006794","index":6794,"input":{"contigs":{"synthetic_A":846,"synthetic_B":844},"features":[{"basis":"one_closed","contig":"synthetic_A","end":85,"start":67,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":291,"start":285,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":532,"start":468,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":777,"start":675,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":578,"start":564,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":174,"start":140,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":161,"start":159,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":150,"start":126,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":146,"start":78,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":85,"start":67,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":65}],"query_bed":[353,418],"query_length":65,"union_overlap_bases":65},"family":"coordinate_conversion","fingerprint":"6ad34372e0d9755c3d4567240819bf95207477f4cc39b3bef2c42642053c0602","group_id":"6ad34372e0d9755c3d4567240819bf95207477f4cc39b3bef2c42642053c0602","id":"INTERVALS-0006804","index":6804,"input":{"contigs":{"synthetic_A":1007,"synthetic_B":1243},"features":[{"basis":"one_closed","contig":"synthetic_B","end":418,"start":354,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":219,"start":155,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":296,"start":223,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":830,"start":793,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":838,"start":758,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":679,"start":629,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":633,"start":611,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":418,"start":354,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":5,"overlap_bases":22}],"query_bed":[325,360],"query_length":35,"union_overlap_bases":22},"family":"touching_boundary","fingerprint":"ac6253785cf7b0f43e7017a78c339d2c81b4e9e0ade0774d4370575b84b58940","group_id":"ac6253785cf7b0f43e7017a78c339d2c81b4e9e0ade0774d4370575b84b58940","id":"INTERVALS-0006810","index":6810,"input":{"contigs":{"synthetic_A":1111,"synthetic_B":711},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":325,"start":307,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":392,"start":360,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":621,"start":519,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":991,"start":979,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":327,"start":245,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":369,"start":339,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":618,"start":569,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":360,"start":325,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":15},{"feature_index":2,"overlap_bases":15}],"query_bed":[215,230],"query_length":15,"union_overlap_bases":15},"family":"stranded","fingerprint":"192806028a0ad2c03f86f823918050f800ecc782664475c5367a2311feced2a4","group_id":"192806028a0ad2c03f86f823918050f800ecc782664475c5367a2311feced2a4","id":"INTERVALS-0006813","index":6813,"input":{"contigs":{"synthetic_A":696,"synthetic_B":1133},"features":[{"basis":"one_closed","contig":"synthetic_B","end":230,"start":216,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":230,"start":216,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":253,"start":152,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":171,"start":99,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":617,"start":570,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":984,"start":963,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":344,"start":309,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":230,"start":215,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":37},{"feature_index":1,"overlap_bases":35}],"query_bed":[268,305],"query_length":37,"union_overlap_bases":37},"family":"nested","fingerprint":"54b0390651792976a0a60f9cab70cbfe0b5633dc3c601ae4a33f89e504a5ad78","group_id":"54b0390651792976a0a60f9cab70cbfe0b5633dc3c601ae4a33f89e504a5ad78","id":"INTERVALS-0006841","index":6841,"input":{"contigs":{"synthetic_A":1481,"synthetic_B":1515},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":310,"start":263,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":304,"start":270,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":713,"start":608,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":708,"start":688,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1038,"start":980,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":890,"start":876,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1308,"start":1213,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":203,"start":103,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":218,"start":192,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1306,"start":1234,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":498,"start":443,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":108,"start":74,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":305,"start":268,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":41}],"query_bed":[343,384],"query_length":41,"union_overlap_bases":41},"family":"stranded","fingerprint":"22cf823e1e43f75347fee6425da4607e8b5faf1c5a8cd067ce0b958d59cac304","group_id":"22cf823e1e43f75347fee6425da4607e8b5faf1c5a8cd067ce0b958d59cac304","id":"INTERVALS-0006858","index":6858,"input":{"contigs":{"synthetic_A":1771,"synthetic_B":1366},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":384,"start":343,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":384,"start":343,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":617,"start":525,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1062,"start":999,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1231,"start":1215,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1009,"start":940,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":216,"start":208,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":894,"start":792,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":140,"start":29,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":384,"start":344,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[238,257],"query_length":19,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"8789c2a239652932181d3d2fb0d5b639c9c29fd305a75fd49dfe02345567fef3","group_id":"8789c2a239652932181d3d2fb0d5b639c9c29fd305a75fd49dfe02345567fef3","id":"INTERVALS-0006860","index":6860,"input":{"contigs":{"synthetic_A":672,"synthetic_B":1195},"features":[{"basis":"one_closed","contig":"synthetic_B","end":238,"start":233,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":279,"start":258,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":408,"start":393,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":581,"start":478,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":997,"start":960,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":457,"start":434,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":409,"start":389,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":88,"start":14,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":257,"start":239,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":8,"overlap_bases":40}],"query_bed":[1196,1271],"query_length":75,"union_overlap_bases":40},"family":"touching_boundary","fingerprint":"b893bd62052696a6f2c644d685ebda3415ccaabd4c69aaedf8233ea4386ac215","group_id":"b893bd62052696a6f2c644d685ebda3415ccaabd4c69aaedf8233ea4386ac215","id":"INTERVALS-0006870","index":6870,"input":{"contigs":{"synthetic_A":997,"synthetic_B":1629},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1196,"start":1182,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1309,"start":1272,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":217,"start":138,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":361,"start":344,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":653,"start":616,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":784,"start":717,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":829,"start":815,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":126,"start":39,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1236,"start":1128,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":873,"start":761,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":387,"start":290,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1345,"start":1296,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1271,"start":1196,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[35,80],"query_length":45,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"884a58649e2bb71b925e48d1939275ea0645997e7921f56d68933e841c366f22","group_id":"884a58649e2bb71b925e48d1939275ea0645997e7921f56d68933e841c366f22","id":"INTERVALS-0006880","index":6880,"input":{"contigs":{"synthetic_A":650,"synthetic_B":662},"features":[{"basis":"one_closed","contig":"synthetic_B","end":35,"start":18,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":119,"start":81,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":452,"start":365,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":321,"start":238,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":352,"start":264,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":444,"start":403,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":80,"start":35,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":62},{"feature_index":2,"overlap_bases":2}],"query_bed":[1373,1436],"query_length":63,"union_overlap_bases":63},"family":"overlapping_blocks","fingerprint":"2cf3f9f29a6d9ee0264b4f9d49acc23dfbc3d2653327b13d507e6dd8491dca94","group_id":"2cf3f9f29a6d9ee0264b4f9d49acc23dfbc3d2653327b13d507e6dd8491dca94","id":"INTERVALS-0006922","index":6922,"input":{"contigs":{"synthetic_A":1640,"synthetic_B":1066},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1376,"start":1371,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1436,"start":1374,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1439,"start":1435,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1282,"start":1259,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":592,"start":493,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":544,"start":509,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":964,"start":878,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":396,"start":394,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":507,"start":406,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1436,"start":1374,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1031,1097],"query_length":66,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"afc039eab9132add98a235ccb35b64664d4678f0a9cd8b485d952dae4ac23f08","group_id":"afc039eab9132add98a235ccb35b64664d4678f0a9cd8b485d952dae4ac23f08","id":"INTERVALS-0006925","index":6925,"input":{"contigs":{"synthetic_A":1365,"synthetic_B":1448},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1031,"start":1016,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1114,"start":1097,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1054,"start":995,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1153,"start":1121,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":873,"start":812,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1097,"start":1032,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":7}],"query_bed":[629,636],"query_length":7,"union_overlap_bases":7},"family":"stranded","fingerprint":"4c01bbb8aaa48e41d1d50fc61675ec1d093f5723ff54628250df6f4f3980e09a","group_id":"4c01bbb8aaa48e41d1d50fc61675ec1d093f5723ff54628250df6f4f3980e09a","id":"INTERVALS-0006933","index":6933,"input":{"contigs":{"synthetic_A":1425,"synthetic_B":1424},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":636,"start":629,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":636,"start":629,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":713,"start":673,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":118,"start":81,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":585,"start":468,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":897,"start":867,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":923,"start":880,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1171,"start":1122,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":417,"start":379,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":524,"start":469,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":956,"start":888,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":636,"start":630,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":16},{"feature_index":2,"overlap_bases":2}],"query_bed":[173,190],"query_length":17,"union_overlap_bases":17},"family":"overlapping_blocks","fingerprint":"9d4f3b12808636134d27e9fbba623fb58b536ad2ab3c799126806e7b685572ff","group_id":"9d4f3b12808636134d27e9fbba623fb58b536ad2ab3c799126806e7b685572ff","id":"INTERVALS-0006942","index":6942,"input":{"contigs":{"synthetic_A":1553,"synthetic_B":622},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":176,"start":170,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":190,"start":175,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":193,"start":188,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":564,"start":480,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":119,"start":68,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":76,"start":10,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":261,"start":256,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":210,"start":94,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":601,"start":483,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":190,"start":174,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18},{"feature_index":11,"overlap_bases":8}],"query_bed":[322,340],"query_length":18,"union_overlap_bases":18},"family":"coordinate_conversion","fingerprint":"385a6fc4643c263da5e686e1452e9c5367b4d5fee05277bbe5834fb1cdfc312d","group_id":"385a6fc4643c263da5e686e1452e9c5367b4d5fee05277bbe5834fb1cdfc312d","id":"INTERVALS-0006944","index":6944,"input":{"contigs":{"synthetic_A":619,"synthetic_B":1480},"features":[{"basis":"one_closed","contig":"synthetic_A","end":340,"start":323,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":894,"start":847,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":679,"start":595,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":500,"start":457,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":447,"start":430,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":172,"start":74,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":287,"start":269,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":150,"start":45,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":493,"start":428,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":834,"start":828,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":651,"start":543,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":330,"start":226,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":340,"start":323,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[221,244],"query_length":23,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"c00aed4011eb0902e794f20d29342f056949371f0f00b94ecff92b6d56b2ab7d","group_id":"c00aed4011eb0902e794f20d29342f056949371f0f00b94ecff92b6d56b2ab7d","id":"INTERVALS-0006950","index":6950,"input":{"contigs":{"synthetic_A":1243,"synthetic_B":782},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":221,"start":218,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":261,"start":245,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":778,"start":713,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1066,"start":952,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":171,"start":165,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":739,"start":729,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":635,"start":597,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":366,"start":283,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":378,"start":280,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":279,"start":270,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":603,"start":503,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":244,"start":221,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":75},{"feature_index":2,"overlap_bases":2},{"feature_index":3,"overlap_bases":76},{"feature_index":5,"overlap_bases":13}],"query_bed":[166,242],"query_length":76,"union_overlap_bases":76},"family":"overlapping_blocks","fingerprint":"f3405f06efbc32ed5a27635e2cd1b73f690e719ee02b1d8dba67f9ed94aa9676","group_id":"f3405f06efbc32ed5a27635e2cd1b73f690e719ee02b1d8dba67f9ed94aa9676","id":"INTERVALS-0006977","index":6977,"input":{"contigs":{"synthetic_A":1379,"synthetic_B":1496},"features":[{"basis":"one_closed","contig":"synthetic_A","end":169,"start":164,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":242,"start":167,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":245,"start":240,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":258,"start":155,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":302,"start":190,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":193,"start":180,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":242,"start":166,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[631,699],"query_length":68,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"c1d09bde79396be874d19c2f5c8a5eae952ba6fce533d57f8d05c65042c1842f","group_id":"c1d09bde79396be874d19c2f5c8a5eae952ba6fce533d57f8d05c65042c1842f","id":"INTERVALS-0006980","index":6980,"input":{"contigs":{"synthetic_A":897,"synthetic_B":1391},"features":[{"basis":"one_closed","contig":"synthetic_B","end":631,"start":616,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":723,"start":700,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":314,"start":247,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":718,"start":713,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":517,"start":466,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":396,"start":298,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":637,"start":531,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":743,"start":684,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1325,"start":1229,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":590,"start":528,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":699,"start":631,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":64}],"query_bed":[557,621],"query_length":64,"union_overlap_bases":64},"family":"coordinate_conversion","fingerprint":"250a2d56ca9ebccc5670c59443f35fb7a00f3db72d8b26b20142714d21f209b5","group_id":"250a2d56ca9ebccc5670c59443f35fb7a00f3db72d8b26b20142714d21f209b5","id":"INTERVALS-0006989","index":6989,"input":{"contigs":{"synthetic_A":879,"synthetic_B":621},"features":[{"basis":"one_closed","contig":"synthetic_A","end":621,"start":558,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":294,"start":280,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":214,"start":155,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":514,"start":463,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":222,"start":210,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":94,"start":17,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":143,"start":42,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":482,"start":450,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":515,"start":472,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":68,"start":62,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":98,"start":83,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":621,"start":558,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[555,634],"query_length":79,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"6eb1f3bc4fb2b4ffbe7926e7e1227f3aad6b2036065928fc2966e4acc26afd95","group_id":"6eb1f3bc4fb2b4ffbe7926e7e1227f3aad6b2036065928fc2966e4acc26afd95","id":"INTERVALS-0007025","index":7025,"input":{"contigs":{"synthetic_A":1361,"synthetic_B":1312},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":555,"start":543,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":667,"start":635,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":261,"start":196,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1234,"start":1167,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":420,"start":416,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":75,"start":4,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":37,"start":12,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1203,"start":1149,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":480,"start":419,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":634,"start":555,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":68},{"feature_index":9,"overlap_bases":33}],"query_bed":[913,981],"query_length":68,"union_overlap_bases":68},"family":"coordinate_conversion","fingerprint":"2ce151b2386c2304c53b0cbd9d0e8d462bd29f26e7baf38ca0da3324258e305d","group_id":"2ce151b2386c2304c53b0cbd9d0e8d462bd29f26e7baf38ca0da3324258e305d","id":"INTERVALS-0007049","index":7049,"input":{"contigs":{"synthetic_A":1543,"synthetic_B":1186},"features":[{"basis":"one_closed","contig":"synthetic_B","end":981,"start":914,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1124,"start":1116,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":487,"start":373,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":845,"start":840,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1078,"start":1007,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":529,"start":429,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1157,"start":1153,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":375,"start":375,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":771,"start":770,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":987,"start":949,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1009,"start":901,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":981,"start":914,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":69},{"feature_index":2,"overlap_bases":2}],"query_bed":[427,497],"query_length":70,"union_overlap_bases":70},"family":"overlapping_blocks","fingerprint":"0c9f60ced0ca8cdaa276c928eed5f59feace951b4feefd1a963ecee5d05ad451","group_id":"0c9f60ced0ca8cdaa276c928eed5f59feace951b4feefd1a963ecee5d05ad451","id":"INTERVALS-0007052","index":7052,"input":{"contigs":{"synthetic_A":1211,"synthetic_B":1212},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":430,"start":424,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":497,"start":428,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":500,"start":495,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":897,"start":896,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":931,"start":845,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":269,"start":227,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":322,"start":214,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":497,"start":428,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[262,300],"query_length":38,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"1aa5cf3254bbf8b50d94d9f3b8c68a9f5ddd8b0b85c97f49f4987bc5ff522b79","group_id":"1aa5cf3254bbf8b50d94d9f3b8c68a9f5ddd8b0b85c97f49f4987bc5ff522b79","id":"INTERVALS-0007055","index":7055,"input":{"contigs":{"synthetic_A":764,"synthetic_B":781},"features":[{"basis":"one_closed","contig":"synthetic_A","end":262,"start":254,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":335,"start":301,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":319,"start":226,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":407,"start":356,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":671,"start":572,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":701,"start":644,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":311,"start":259,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":300,"start":262,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[530,540],"query_length":10,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"54b4bd96d6ec9cb009579fd08fd93e6ade1e90a2b0262efda699af9e9217973a","group_id":"54b4bd96d6ec9cb009579fd08fd93e6ade1e90a2b0262efda699af9e9217973a","id":"INTERVALS-0007065","index":7065,"input":{"contigs":{"synthetic_A":1084,"synthetic_B":1523},"features":[{"basis":"one_closed","contig":"synthetic_B","end":530,"start":517,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":575,"start":540,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":645,"start":645,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1462,"start":1375,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":804,"start":688,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":903,"start":791,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":252,"start":146,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":540,"start":531,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":61},{"feature_index":1,"overlap_bases":59}],"query_bed":[195,256],"query_length":61,"union_overlap_bases":61},"family":"nested","fingerprint":"123aeb168ba8ffd8f9e5ecd3703b9f260750cd1ebaf67905a343c4e386b1361d","group_id":"123aeb168ba8ffd8f9e5ecd3703b9f260750cd1ebaf67905a343c4e386b1361d","id":"INTERVALS-0007066","index":7066,"input":{"contigs":{"synthetic_A":795,"synthetic_B":1441},"features":[{"basis":"one_closed","contig":"synthetic_A","end":261,"start":191,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":255,"start":196,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":615,"start":540,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":320,"start":315,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1166,"start":1113,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1333,"start":1293,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1223,"start":1188,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":256,"start":196,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":66}],"query_bed":[1069,1135],"query_length":66,"union_overlap_bases":66},"family":"coordinate_conversion","fingerprint":"0117222891a2990cdb3602eecc72e85cf36c2a51255faf3a2d68b3b772cfe98c","group_id":"0117222891a2990cdb3602eecc72e85cf36c2a51255faf3a2d68b3b772cfe98c","id":"INTERVALS-0007069","index":7069,"input":{"contigs":{"synthetic_A":1049,"synthetic_B":1756},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1135,"start":1070,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1352,"start":1304,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":450,"start":373,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":693,"start":634,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":328,"start":281,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":304,"start":298,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":176,"start":131,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":808,"start":766,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":753,"start":636,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1135,"start":1070,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":70}],"query_bed":[238,308],"query_length":70,"union_overlap_bases":70},"family":"stranded","fingerprint":"5b3f4e4c243e20564bb38f36519f348e48c8fab8018ba9d32baf3837c969cbc4","group_id":"5b3f4e4c243e20564bb38f36519f348e48c8fab8018ba9d32baf3837c969cbc4","id":"INTERVALS-0007093","index":7093,"input":{"contigs":{"synthetic_A":915,"synthetic_B":1574},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":308,"start":238,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":308,"start":239,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":304,"start":221,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":650,"start":583,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":390,"start":364,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1221,"start":1201,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":334,"start":271,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":123,"start":62,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1073,"start":1009,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":590,"start":470,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":98,"start":7,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":308,"start":238,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":30},{"feature_index":1,"overlap_bases":28}],"query_bed":[153,183],"query_length":30,"union_overlap_bases":30},"family":"nested","fingerprint":"488a75069d9ea9bfb1bc80929fa942c46151de666ff6773a0c0795d1e00f6342","group_id":"488a75069d9ea9bfb1bc80929fa942c46151de666ff6773a0c0795d1e00f6342","id":"INTERVALS-0007096","index":7096,"input":{"contigs":{"synthetic_A":1439,"synthetic_B":1165},"features":[{"basis":"one_closed","contig":"synthetic_B","end":188,"start":149,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":182,"start":155,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":256,"start":192,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":626,"start":577,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":439,"start":352,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":499,"start":453,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":944,"start":840,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":183,"start":154,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":42},{"feature_index":2,"overlap_bases":2}],"query_bed":[28,71],"query_length":43,"union_overlap_bases":43},"family":"overlapping_blocks","fingerprint":"51d65fe4066344ab9cd446180eee1772e4a0a87b2f5c8cc7cd75c963bcba3790","group_id":"51d65fe4066344ab9cd446180eee1772e4a0a87b2f5c8cc7cd75c963bcba3790","id":"INTERVALS-0007107","index":7107,"input":{"contigs":{"synthetic_A":1531,"synthetic_B":686},"features":[{"basis":"one_closed","contig":"synthetic_A","end":31,"start":26,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":71,"start":30,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":74,"start":69,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":481,"start":400,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":749,"start":666,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":190,"start":95,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":71,"start":29,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46},{"feature_index":1,"overlap_bases":44},{"feature_index":8,"overlap_bases":37}],"query_bed":[423,469],"query_length":46,"union_overlap_bases":46},"family":"nested","fingerprint":"f936fa7872b9ab47c9ce55ad49616b963b503f6a9d063d8630af2158e43b425c","group_id":"f936fa7872b9ab47c9ce55ad49616b963b503f6a9d063d8630af2158e43b425c","id":"INTERVALS-0007111","index":7111,"input":{"contigs":{"synthetic_A":1372,"synthetic_B":1668},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":474,"start":418,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":468,"start":425,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":308,"start":215,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":882,"start":818,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1375,"start":1309,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1167,"start":1073,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1060,"start":1035,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":269,"start":203,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":499,"start":432,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":130,"start":53,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":464,"start":435,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":469,"start":423,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[520,529],"query_length":9,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"391d18da653d27fe3ab3462c9a65a04a00175a73d400906cfbdf920fbb024397","group_id":"391d18da653d27fe3ab3462c9a65a04a00175a73d400906cfbdf920fbb024397","id":"INTERVALS-0007115","index":7115,"input":{"contigs":{"synthetic_A":973,"synthetic_B":1341},"features":[{"basis":"one_closed","contig":"synthetic_B","end":520,"start":505,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":532,"start":529,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1049,"start":969,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":130,"start":41,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1153,"start":1131,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":796,"start":768,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":343,"start":281,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":557,"start":550,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1173,"start":1089,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1099,"start":985,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":529,"start":521,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":30}],"query_bed":[29,59],"query_length":30,"union_overlap_bases":30},"family":"coordinate_conversion","fingerprint":"64a82490e60f510dd00b4f15a3ad30207b344a3714a644d84f8f851a8299a2d4","group_id":"64a82490e60f510dd00b4f15a3ad30207b344a3714a644d84f8f851a8299a2d4","id":"INTERVALS-0007119","index":7119,"input":{"contigs":{"synthetic_A":1009,"synthetic_B":1527},"features":[{"basis":"one_closed","contig":"synthetic_B","end":59,"start":30,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":554,"start":532,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":316,"start":264,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1369,"start":1255,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":139,"start":82,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":811,"start":729,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":789,"start":743,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":624,"start":530,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":493,"start":413,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":678,"start":561,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":995,"start":952,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":59,"start":30,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":8,"overlap_bases":24}],"query_bed":[347,408],"query_length":61,"union_overlap_bases":24},"family":"touching_boundary","fingerprint":"5c03364000f25569ad918e850be93f51b78483d108bada2809b1f20698646ccb","group_id":"5c03364000f25569ad918e850be93f51b78483d108bada2809b1f20698646ccb","id":"INTERVALS-0007130","index":7130,"input":{"contigs":{"synthetic_A":1089,"synthetic_B":675},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":347,"start":332,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":409,"start":409,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":853,"start":845,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":999,"start":939,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":326,"start":289,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":149,"start":45,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":956,"start":881,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":873,"start":768,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":371,"start":320,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1041,"start":943,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":366,"start":340,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":356,"start":270,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":408,"start":347,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":8},{"feature_index":2,"overlap_bases":2}],"query_bed":[1395,1404],"query_length":9,"union_overlap_bases":9},"family":"overlapping_blocks","fingerprint":"579d66b60bbd28c6896e1ceb1b15b3490f333d0540a47e673ced29827b8e2650","group_id":"579d66b60bbd28c6896e1ceb1b15b3490f333d0540a47e673ced29827b8e2650","id":"INTERVALS-0007132","index":7132,"input":{"contigs":{"synthetic_A":1796,"synthetic_B":1138},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1398,"start":1393,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1404,"start":1397,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1407,"start":1402,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1483,"start":1472,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":819,"start":734,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":367,"start":280,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1404,"start":1395,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":43},{"feature_index":1,"overlap_bases":41}],"query_bed":[531,574],"query_length":43,"union_overlap_bases":43},"family":"nested","fingerprint":"91d42ac2b5827abf619f5bd6b9b0caf7267a2ffe86de1933e78d039ccb4a3c06","group_id":"91d42ac2b5827abf619f5bd6b9b0caf7267a2ffe86de1933e78d039ccb4a3c06","id":"INTERVALS-0007156","index":7156,"input":{"contigs":{"synthetic_A":1790,"synthetic_B":1368},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":579,"start":526,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":573,"start":532,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":781,"start":713,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1509,"start":1436,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":576,"start":526,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":575,"start":480,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":24,"start":22,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":996,"start":970,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":906,"start":812,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":574,"start":532,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":23},{"feature_index":1,"overlap_bases":21}],"query_bed":[225,248],"query_length":23,"union_overlap_bases":23},"family":"nested","fingerprint":"585f9b96da3eb65c4004e95e06ae05cd8495b23580ee8ed267042649c2af4c25","group_id":"585f9b96da3eb65c4004e95e06ae05cd8495b23580ee8ed267042649c2af4c25","id":"INTERVALS-0007166","index":7166,"input":{"contigs":{"synthetic_A":1350,"synthetic_B":641},"features":[{"basis":"one_closed","contig":"synthetic_A","end":253,"start":221,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":247,"start":226,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":355,"start":333,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":467,"start":413,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":624,"start":523,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":288,"start":265,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":78,"start":58,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":26,"start":14,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":487,"start":407,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":98,"start":95,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":244,"start":192,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":91,"start":84,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":248,"start":225,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":35}],"query_bed":[1223,1258],"query_length":35,"union_overlap_bases":35},"family":"stranded","fingerprint":"1fd8f69643145e70f3ff6913fead825671a346a901009d89e036f649f6971c44","group_id":"1fd8f69643145e70f3ff6913fead825671a346a901009d89e036f649f6971c44","id":"INTERVALS-0007168","index":7168,"input":{"contigs":{"synthetic_A":1588,"synthetic_B":1790},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1258,"start":1223,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1258,"start":1224,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":572,"start":517,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1154,"start":1131,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1647,"start":1563,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":849,"start":760,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1150,"start":1123,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1068,"start":976,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":934,"start":932,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":730,"start":659,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":105,"start":88,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1258,"start":1223,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":68}],"query_bed":[169,237],"query_length":68,"union_overlap_bases":68},"family":"stranded","fingerprint":"96b4496e3ff80b19029d0f950d9c5f640976f4ef4e25626ed5e5c35ecdff8aa3","group_id":"96b4496e3ff80b19029d0f950d9c5f640976f4ef4e25626ed5e5c35ecdff8aa3","id":"INTERVALS-0007173","index":7173,"input":{"contigs":{"synthetic_A":1245,"synthetic_B":1042},"features":[{"basis":"one_closed","contig":"synthetic_B","end":237,"start":170,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":237,"start":170,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":255,"start":192,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":232,"start":146,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":152,"start":44,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":725,"start":683,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":525,"start":504,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":237,"start":170,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":17}],"query_bed":[629,646],"query_length":17,"union_overlap_bases":17},"family":"stranded","fingerprint":"c2828b5a4f44e8ca2539aa308fcf1a4e121b309c4e3996a6639c20fda3b16ba6","group_id":"c2828b5a4f44e8ca2539aa308fcf1a4e121b309c4e3996a6639c20fda3b16ba6","id":"INTERVALS-0007188","index":7188,"input":{"contigs":{"synthetic_A":1215,"synthetic_B":1391},"features":[{"basis":"one_closed","contig":"synthetic_B","end":646,"start":630,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":646,"start":629,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1054,"start":967,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":571,"start":491,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":581,"start":571,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":646,"start":630,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":24},{"feature_index":1,"overlap_bases":22}],"query_bed":[38,62],"query_length":24,"union_overlap_bases":24},"family":"nested","fingerprint":"d6346f9c3d83db0f320ec1f629e32afb2e84b9952a58b750c0bc1fc20a8c9b2d","group_id":"d6346f9c3d83db0f320ec1f629e32afb2e84b9952a58b750c0bc1fc20a8c9b2d","id":"INTERVALS-0007191","index":7191,"input":{"contigs":{"synthetic_A":996,"synthetic_B":1362},"features":[{"basis":"one_closed","contig":"synthetic_B","end":67,"start":34,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":61,"start":39,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1159,"start":1090,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":544,"start":426,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":610,"start":560,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":819,"start":776,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":668,"start":600,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":464,"start":358,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":757,"start":655,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1281,"start":1233,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":62,"start":38,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":10},{"feature_index":1,"overlap_bases":8}],"query_bed":[433,443],"query_length":10,"union_overlap_bases":10},"family":"nested","fingerprint":"5591e71606c92f531a1542c4da74642bb091a61b2632bb8e8ecd7ea8b49bc156","group_id":"5591e71606c92f531a1542c4da74642bb091a61b2632bb8e8ecd7ea8b49bc156","id":"INTERVALS-0007221","index":7221,"input":{"contigs":{"synthetic_A":1476,"synthetic_B":1304},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":448,"start":428,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":442,"start":434,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":145,"start":47,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":592,"start":500,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1010,"start":919,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1058,"start":950,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":556,"start":552,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1154,"start":1037,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":969,"start":877,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1219,"start":1202,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":443,"start":433,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":48},{"feature_index":2,"overlap_bases":2}],"query_bed":[116,165],"query_length":49,"union_overlap_bases":49},"family":"overlapping_blocks","fingerprint":"863bf244d112045d1e3109e480e759201f930e4b12bf0b78f30f6df7c85965d9","group_id":"863bf244d112045d1e3109e480e759201f930e4b12bf0b78f30f6df7c85965d9","id":"INTERVALS-0007232","index":7232,"input":{"contigs":{"synthetic_A":1303,"synthetic_B":1525},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":119,"start":113,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":165,"start":118,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":168,"start":164,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1173,"start":1118,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1035,"start":928,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":324,"start":236,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":855,"start":779,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":494,"start":441,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":200,"start":127,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":165,"start":116,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[640,715],"query_length":75,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"c0128d8edf8b70f53d1b242bab72ba00a652455fa7a133103195a106ac87bb84","group_id":"c0128d8edf8b70f53d1b242bab72ba00a652455fa7a133103195a106ac87bb84","id":"INTERVALS-0007235","index":7235,"input":{"contigs":{"synthetic_A":1471,"synthetic_B":1147},"features":[{"basis":"one_closed","contig":"synthetic_B","end":640,"start":631,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":726,"start":716,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":491,"start":426,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":869,"start":801,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":412,"start":315,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1146,"start":1039,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":904,"start":838,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":833,"start":731,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":234,"start":188,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1375,"start":1345,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":847,"start":751,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":555,"start":517,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":715,"start":641,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":70},{"feature_index":1,"overlap_bases":68},{"feature_index":5,"overlap_bases":23}],"query_bed":[230,300],"query_length":70,"union_overlap_bases":70},"family":"nested","fingerprint":"d0ccdd8c1a20539dc2481641476590f51cb8b5bc11983c1bb1ee90839403e21b","group_id":"d0ccdd8c1a20539dc2481641476590f51cb8b5bc11983c1bb1ee90839403e21b","id":"INTERVALS-0007236","index":7236,"input":{"contigs":{"synthetic_A":643,"synthetic_B":1183},"features":[{"basis":"one_closed","contig":"synthetic_A","end":305,"start":226,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":299,"start":232,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":377,"start":329,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":735,"start":624,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":113,"start":87,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":253,"start":183,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":300,"start":231,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":71},{"feature_index":1,"overlap_bases":5}],"query_bed":[156,227],"query_length":71,"union_overlap_bases":71},"family":"coordinate_conversion","fingerprint":"d19f616c8b691921f6e8f44c44c2cc3c9d7e47e040ed452ea86955387d9f7fcc","group_id":"d19f616c8b691921f6e8f44c44c2cc3c9d7e47e040ed452ea86955387d9f7fcc","id":"INTERVALS-0007249","index":7249,"input":{"contigs":{"synthetic_A":916,"synthetic_B":1717},"features":[{"basis":"one_closed","contig":"synthetic_B","end":227,"start":157,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":335,"start":223,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":578,"start":547,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":666,"start":579,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":842,"start":802,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":409,"start":299,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":499,"start":438,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1056,"start":1048,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":227,"start":157,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[695,737],"query_length":42,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"4057566a5ef65fda8f843ba6d00e7f5573f57e5338200c9ca4098b7df99da498","group_id":"4057566a5ef65fda8f843ba6d00e7f5573f57e5338200c9ca4098b7df99da498","id":"INTERVALS-0007270","index":7270,"input":{"contigs":{"synthetic_A":1461,"synthetic_B":663},"features":[{"basis":"one_closed","contig":"synthetic_A","end":695,"start":679,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":765,"start":737,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":300,"start":182,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":567,"start":541,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":467,"start":373,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":737,"start":695,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":26}],"query_bed":[131,157],"query_length":26,"union_overlap_bases":26},"family":"stranded","fingerprint":"53663c4e2890d0f829ccf771f78437bc95c184d98efd8b7259b3b624d812f224","group_id":"53663c4e2890d0f829ccf771f78437bc95c184d98efd8b7259b3b624d812f224","id":"INTERVALS-0007278","index":7278,"input":{"contigs":{"synthetic_A":966,"synthetic_B":1370},"features":[{"basis":"one_closed","contig":"synthetic_B","end":157,"start":132,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":157,"start":132,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":483,"start":444,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1024,"start":915,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":165,"start":144,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":773,"start":718,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":157,"start":132,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":25},{"feature_index":2,"overlap_bases":2}],"query_bed":[205,231],"query_length":26,"union_overlap_bases":26},"family":"overlapping_blocks","fingerprint":"c863d79a57b2c64097febca700d66509e36ee222a4265cf6b25ef444ce4d8410","group_id":"c863d79a57b2c64097febca700d66509e36ee222a4265cf6b25ef444ce4d8410","id":"INTERVALS-0007287","index":7287,"input":{"contigs":{"synthetic_A":930,"synthetic_B":1399},"features":[{"basis":"one_closed","contig":"synthetic_A","end":208,"start":203,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":231,"start":207,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":234,"start":229,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":692,"start":653,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":845,"start":740,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":713,"start":620,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":877,"start":766,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":231,"start":205,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":33}],"query_bed":[807,840],"query_length":33,"union_overlap_bases":33},"family":"stranded","fingerprint":"63dfffd84c0cecf67a8f6597dbe54e776634189dd90de4ad29e93761cd34e065","group_id":"63dfffd84c0cecf67a8f6597dbe54e776634189dd90de4ad29e93761cd34e065","id":"INTERVALS-0007293","index":7293,"input":{"contigs":{"synthetic_A":1169,"synthetic_B":1355},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":840,"start":807,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":840,"start":807,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":937,"start":922,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":485,"start":476,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":293,"start":237,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":978,"start":962,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":987,"start":939,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":510,"start":415,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":110,"start":38,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1131,"start":1078,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":840,"start":808,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":48}],"query_bed":[382,430],"query_length":48,"union_overlap_bases":48},"family":"coordinate_conversion","fingerprint":"1a1ec05a829d348376dcb6884d4b5f11ca6cd5b101880f3fa79daea45f93c5c6","group_id":"1a1ec05a829d348376dcb6884d4b5f11ca6cd5b101880f3fa79daea45f93c5c6","id":"INTERVALS-0007299","index":7299,"input":{"contigs":{"synthetic_A":1383,"synthetic_B":1190},"features":[{"basis":"one_closed","contig":"synthetic_A","end":430,"start":383,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1123,"start":1033,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":465,"start":371,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":351,"start":295,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":523,"start":510,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":374,"start":364,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":450,"start":439,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":792,"start":720,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":486,"start":378,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":430,"start":383,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":40},{"feature_index":1,"overlap_bases":38}],"query_bed":[1380,1420],"query_length":40,"union_overlap_bases":40},"family":"nested","fingerprint":"5fabb9b6c29fcd9bba88182349f552e613f2379aaa01acab792d125c36e073e5","group_id":"5fabb9b6c29fcd9bba88182349f552e613f2379aaa01acab792d125c36e073e5","id":"INTERVALS-0007306","index":7306,"input":{"contigs":{"synthetic_A":1599,"synthetic_B":1763},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1425,"start":1375,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1419,"start":1382,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1295,"start":1272,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":945,"start":942,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":643,"start":631,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":376,"start":307,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1379,"start":1353,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":767,"start":665,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":131,"start":19,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1560,"start":1477,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":328,"start":270,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":263,"start":149,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1420,"start":1381,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":35},{"feature_index":2,"overlap_bases":2}],"query_bed":[256,292],"query_length":36,"union_overlap_bases":36},"family":"overlapping_blocks","fingerprint":"4329ad2ad9491dabbebfb716b9a5297b6b290607340b41fd3d33de7a194b120b","group_id":"4329ad2ad9491dabbebfb716b9a5297b6b290607340b41fd3d33de7a194b120b","id":"INTERVALS-0007317","index":7317,"input":{"contigs":{"synthetic_A":1377,"synthetic_B":1266},"features":[{"basis":"one_closed","contig":"synthetic_B","end":259,"start":254,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":292,"start":257,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":295,"start":291,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":763,"start":734,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":182,"start":67,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":129,"start":28,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":292,"start":257,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":62},{"feature_index":1,"overlap_bases":60},{"feature_index":4,"overlap_bases":13}],"query_bed":[838,900],"query_length":62,"union_overlap_bases":62},"family":"nested","fingerprint":"912f272a8c06ad24983791430bfe32354919fead0c8fd632f84e6c91e2961dc4","group_id":"912f272a8c06ad24983791430bfe32354919fead0c8fd632f84e6c91e2961dc4","id":"INTERVALS-0007336","index":7336,"input":{"contigs":{"synthetic_A":917,"synthetic_B":1653},"features":[{"basis":"one_closed","contig":"synthetic_B","end":905,"start":834,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":899,"start":839,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1215,"start":1198,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":513,"start":495,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":933,"start":888,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":405,"start":297,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":732,"start":696,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":78,"start":49,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":900,"start":839,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":21}],"query_bed":[922,943],"query_length":21,"union_overlap_bases":21},"family":"coordinate_conversion","fingerprint":"91812818f46dc1a57bc80d3a18e72ea7bf8ac57764288ccbee654dcaf4ef8f5f","group_id":"91812818f46dc1a57bc80d3a18e72ea7bf8ac57764288ccbee654dcaf4ef8f5f","id":"INTERVALS-0007339","index":7339,"input":{"contigs":{"synthetic_A":1748,"synthetic_B":1201},"features":[{"basis":"one_closed","contig":"synthetic_A","end":943,"start":923,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":395,"start":349,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1471,"start":1449,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":960,"start":935,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":550,"start":450,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":286,"start":275,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":708,"start":704,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":164,"start":101,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":859,"start":762,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":776,"start":689,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":354,"start":333,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":943,"start":923,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":42},{"feature_index":1,"overlap_bases":40}],"query_bed":[586,628],"query_length":42,"union_overlap_bases":42},"family":"nested","fingerprint":"4530ef169000129355efbb1e20804ff0abd0e06dd23a23e1165a45e4e908949a","group_id":"4530ef169000129355efbb1e20804ff0abd0e06dd23a23e1165a45e4e908949a","id":"INTERVALS-0007341","index":7341,"input":{"contigs":{"synthetic_A":1126,"synthetic_B":1713},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":633,"start":581,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":627,"start":588,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":60,"start":1,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":206,"start":189,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":911,"start":832,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1000,"start":885,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1302,"start":1269,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":617,"start":537,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":535,"start":473,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":860,"start":748,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":845,"start":747,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":628,"start":586,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[267,347],"query_length":80,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e1e42530011edb10597a24e97923545d8ed6be7edd2bbc0e2863af693990373f","group_id":"e1e42530011edb10597a24e97923545d8ed6be7edd2bbc0e2863af693990373f","id":"INTERVALS-0007345","index":7345,"input":{"contigs":{"synthetic_A":1621,"synthetic_B":1318},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":267,"start":250,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":376,"start":348,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":577,"start":509,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1288,"start":1215,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":594,"start":504,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":486,"start":410,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":571,"start":487,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":632,"start":593,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":347,"start":267,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":6},{"feature_index":1,"overlap_bases":4}],"query_bed":[402,408],"query_length":6,"union_overlap_bases":6},"family":"nested","fingerprint":"ebeb4626f50fe5402b2c1e251492c878ed3814dca109cec8c6ec3b47cc0bc695","group_id":"ebeb4626f50fe5402b2c1e251492c878ed3814dca109cec8c6ec3b47cc0bc695","id":"INTERVALS-0007346","index":7346,"input":{"contigs":{"synthetic_A":1617,"synthetic_B":1213},"features":[{"basis":"one_closed","contig":"synthetic_B","end":413,"start":398,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":407,"start":404,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":253,"start":236,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":484,"start":474,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":696,"start":650,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":408,"start":402,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":5},{"feature_index":2,"overlap_bases":2}],"query_bed":[1164,1170],"query_length":6,"union_overlap_bases":6},"family":"overlapping_blocks","fingerprint":"57650e9cb4d057e659af9cdab9f85520b7c894a22ea424a2f36831288d1f9026","group_id":"57650e9cb4d057e659af9cdab9f85520b7c894a22ea424a2f36831288d1f9026","id":"INTERVALS-0007352","index":7352,"input":{"contigs":{"synthetic_A":1730,"synthetic_B":1207},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1167,"start":1161,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1170,"start":1165,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1173,"start":1169,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":493,"start":388,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1449,"start":1429,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":777,"start":657,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":302,"start":234,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":874,"start":756,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":956,"start":944,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":953,"start":887,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1067,"start":1052,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1170,"start":1165,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":9},{"feature_index":1,"overlap_bases":7}],"query_bed":[50,59],"query_length":9,"union_overlap_bases":9},"family":"nested","fingerprint":"f2cdad3021de803ed4b0f348502637c5a9c89c3bf350045a4be463752df90b76","group_id":"f2cdad3021de803ed4b0f348502637c5a9c89c3bf350045a4be463752df90b76","id":"INTERVALS-0007376","index":7376,"input":{"contigs":{"synthetic_A":744,"synthetic_B":887},"features":[{"basis":"one_closed","contig":"synthetic_A","end":64,"start":46,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":58,"start":51,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":575,"start":507,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":611,"start":551,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":257,"start":212,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":59,"start":51,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":56},{"feature_index":2,"overlap_bases":2}],"query_bed":[409,466],"query_length":57,"union_overlap_bases":57},"family":"overlapping_blocks","fingerprint":"b536c65096472f462b589861445bb802b69a482fc25bff67b1d9bad0790b6c96","group_id":"b536c65096472f462b589861445bb802b69a482fc25bff67b1d9bad0790b6c96","id":"INTERVALS-0007377","index":7377,"input":{"contigs":{"synthetic_A":1201,"synthetic_B":1368},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":412,"start":406,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":466,"start":411,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":469,"start":464,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":686,"start":675,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":749,"start":659,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":498,"start":379,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":282,"start":223,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":466,"start":410,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":52},{"feature_index":5,"overlap_bases":46}],"query_bed":[570,622],"query_length":52,"union_overlap_bases":52},"family":"coordinate_conversion","fingerprint":"cc97e1127f67818badd9862d47b435427cd83cca4277478c634259041a3d1d22","group_id":"cc97e1127f67818badd9862d47b435427cd83cca4277478c634259041a3d1d22","id":"INTERVALS-0007384","index":7384,"input":{"contigs":{"synthetic_A":1126,"synthetic_B":934},"features":[{"basis":"one_closed","contig":"synthetic_B","end":622,"start":571,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":644,"start":597,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":100,"start":31,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":719,"start":682,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":826,"start":736,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":616,"start":569,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":201,"start":146,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":140,"start":57,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":773,"start":696,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1058,"start":945,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":622,"start":571,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":59},{"feature_index":1,"overlap_bases":57}],"query_bed":[357,416],"query_length":59,"union_overlap_bases":59},"family":"nested","fingerprint":"815f41ae0a29d42e9156c0479b0d21fbb3d330b6cb99c35dc37c90169c76727b","group_id":"815f41ae0a29d42e9156c0479b0d21fbb3d330b6cb99c35dc37c90169c76727b","id":"INTERVALS-0007386","index":7386,"input":{"contigs":{"synthetic_A":1555,"synthetic_B":925},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":421,"start":352,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":415,"start":359,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1308,"start":1244,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":224,"start":195,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":628,"start":578,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":166,"start":63,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":416,"start":357,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":74},{"feature_index":1,"overlap_bases":72}],"query_bed":[385,459],"query_length":74,"union_overlap_bases":74},"family":"nested","fingerprint":"1ee40f78fa41a694382de7a850a22e9b8caa6e902d5abbcbf0d4abfcff9d7137","group_id":"1ee40f78fa41a694382de7a850a22e9b8caa6e902d5abbcbf0d4abfcff9d7137","id":"INTERVALS-0007401","index":7401,"input":{"contigs":{"synthetic_A":1370,"synthetic_B":671},"features":[{"basis":"one_closed","contig":"synthetic_B","end":464,"start":381,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":458,"start":387,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":781,"start":776,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":487,"start":480,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":249,"start":154,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1086,"start":1030,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1259,"start":1250,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":56,"start":13,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":538,"start":519,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":169,"start":62,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1205,"start":1161,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":317,"start":282,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":459,"start":386,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":5},{"feature_index":3,"overlap_bases":5}],"query_bed":[1024,1029],"query_length":5,"union_overlap_bases":5},"family":"stranded","fingerprint":"2a8c6154b90a801a4540bc9fb46a0d948183e7b48b0d7eccb6d898760c103574","group_id":"2a8c6154b90a801a4540bc9fb46a0d948183e7b48b0d7eccb6d898760c103574","id":"INTERVALS-0007448","index":7448,"input":{"contigs":{"synthetic_A":1565,"synthetic_B":1336},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1029,"start":1024,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1029,"start":1025,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":517,"start":514,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1086,"start":1006,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":327,"start":289,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":279,"start":203,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1190,"start":1101,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1163,"start":1083,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1233,"start":1198,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":854,"start":753,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1029,"start":1025,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":6},{"feature_index":2,"overlap_bases":2}],"query_bed":[72,79],"query_length":7,"union_overlap_bases":7},"family":"overlapping_blocks","fingerprint":"0d28d9ee36a7b4177f40b31cd0f94fa0da44fe5316e3d83ebe4e8f5d936adeee","group_id":"0d28d9ee36a7b4177f40b31cd0f94fa0da44fe5316e3d83ebe4e8f5d936adeee","id":"INTERVALS-0007452","index":7452,"input":{"contigs":{"synthetic_A":989,"synthetic_B":1476},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":75,"start":69,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":79,"start":73,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":82,"start":78,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":572,"start":461,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1171,"start":1156,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":44,"start":17,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":79,"start":72,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":48}],"query_bed":[45,93],"query_length":48,"union_overlap_bases":48},"family":"stranded","fingerprint":"e255300e1a37ca427dbfce325d9dd66f0c84869bb066a218564ee2d258516a10","group_id":"e255300e1a37ca427dbfce325d9dd66f0c84869bb066a218564ee2d258516a10","id":"INTERVALS-0007478","index":7478,"input":{"contigs":{"synthetic_A":932,"synthetic_B":602},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":93,"start":45,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":93,"start":45,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":246,"start":231,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":176,"start":156,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":673,"start":568,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":414,"start":310,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":376,"start":273,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":452,"start":442,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":714,"start":624,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":513,"start":409,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":93,"start":46,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[594,602],"query_length":8,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"b56584cc1c7d3e0c4a271d2ce3d80a6bd950a22294cfb7f7fff6396cb2ddd320","group_id":"b56584cc1c7d3e0c4a271d2ce3d80a6bd950a22294cfb7f7fff6396cb2ddd320","id":"INTERVALS-0007495","index":7495,"input":{"contigs":{"synthetic_A":1027,"synthetic_B":815},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":594,"start":574,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":637,"start":602,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":121,"start":54,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":95,"start":66,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":715,"start":610,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":357,"start":300,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":214,"start":138,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":545,"start":480,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":264,"start":178,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":807,"start":694,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":602,"start":595,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":19},{"feature_index":2,"overlap_bases":2}],"query_bed":[219,239],"query_length":20,"union_overlap_bases":20},"family":"overlapping_blocks","fingerprint":"21df6f2e95c030dee3ec4241700e5a324f782ac21cf409aa61720251f654dd69","group_id":"21df6f2e95c030dee3ec4241700e5a324f782ac21cf409aa61720251f654dd69","id":"INTERVALS-0007497","index":7497,"input":{"contigs":{"synthetic_A":680,"synthetic_B":1320},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":222,"start":216,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":239,"start":221,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":242,"start":237,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":997,"start":922,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":836,"start":780,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":239,"start":220,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56},{"feature_index":1,"overlap_bases":54}],"query_bed":[128,184],"query_length":56,"union_overlap_bases":56},"family":"nested","fingerprint":"154948702754140b581d1aea70e739a14554084e237b1911d6cf2b0571d170e0","group_id":"154948702754140b581d1aea70e739a14554084e237b1911d6cf2b0571d170e0","id":"INTERVALS-0007501","index":7501,"input":{"contigs":{"synthetic_A":1472,"synthetic_B":1795},"features":[{"basis":"one_closed","contig":"synthetic_A","end":189,"start":124,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":183,"start":129,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":770,"start":749,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":743,"start":719,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":355,"start":238,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1138,"start":1038,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":714,"start":633,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1114,"start":1095,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1166,"start":1089,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":602,"start":537,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":595,"start":511,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":647,"start":559,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":184,"start":128,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":52},{"feature_index":1,"overlap_bases":50}],"query_bed":[521,573],"query_length":52,"union_overlap_bases":52},"family":"nested","fingerprint":"a467ab5a96ddf196713fbb512e068c9936dd8d36b0894b9d75b1a40a3fb321d6","group_id":"a467ab5a96ddf196713fbb512e068c9936dd8d36b0894b9d75b1a40a3fb321d6","id":"INTERVALS-0007516","index":7516,"input":{"contigs":{"synthetic_A":943,"synthetic_B":1222},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":578,"start":516,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":572,"start":522,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":790,"start":752,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":625,"start":590,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":334,"start":312,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":769,"start":765,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":789,"start":694,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":756,"start":744,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":874,"start":786,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":573,"start":522,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":65},{"feature_index":2,"overlap_bases":2}],"query_bed":[866,932],"query_length":66,"union_overlap_bases":66},"family":"overlapping_blocks","fingerprint":"cb9b7b3e51dcd0b87946ca5823757cace2264cff82a7d6edf66ea15c70a15c20","group_id":"cb9b7b3e51dcd0b87946ca5823757cace2264cff82a7d6edf66ea15c70a15c20","id":"INTERVALS-0007557","index":7557,"input":{"contigs":{"synthetic_A":887,"synthetic_B":1325},"features":[{"basis":"one_closed","contig":"synthetic_B","end":869,"start":864,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":932,"start":867,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":935,"start":931,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":764,"start":685,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":665,"start":581,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":803,"start":749,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":747,"start":706,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":118,"start":31,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":398,"start":373,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":250,"start":202,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":717,"start":701,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":524,"start":524,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":932,"start":867,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":67},{"feature_index":1,"overlap_bases":65}],"query_bed":[346,413],"query_length":67,"union_overlap_bases":67},"family":"nested","fingerprint":"f824ef5ab68247d7028386f7afb5f4927d2e9cb6f7890fbd7923862d150d4eed","group_id":"f824ef5ab68247d7028386f7afb5f4927d2e9cb6f7890fbd7923862d150d4eed","id":"INTERVALS-0007566","index":7566,"input":{"contigs":{"synthetic_A":1360,"synthetic_B":1454},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":418,"start":341,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":412,"start":347,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1353,"start":1324,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":219,"start":189,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1026,"start":960,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":911,"start":802,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":952,"start":886,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":556,"start":481,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":838,"start":831,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":104,"start":36,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":947,"start":834,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":413,"start":346,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[182,223],"query_length":41,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e9a6ab4400ae4d102f1680fb1e0e6bafc776880dbfc012576405403c763d5731","group_id":"e9a6ab4400ae4d102f1680fb1e0e6bafc776880dbfc012576405403c763d5731","id":"INTERVALS-0007590","index":7590,"input":{"contigs":{"synthetic_A":1124,"synthetic_B":1717},"features":[{"basis":"one_closed","contig":"synthetic_A","end":182,"start":180,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":230,"start":223,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":933,"start":818,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":640,"start":633,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":847,"start":762,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":879,"start":877,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":743,"start":683,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":862,"start":749,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":419,"start":411,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":752,"start":715,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1255,"start":1209,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":560,"start":517,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":223,"start":182,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":28},{"feature_index":2,"overlap_bases":2},{"feature_index":7,"overlap_bases":8}],"query_bed":[90,119],"query_length":29,"union_overlap_bases":29},"family":"overlapping_blocks","fingerprint":"dd630e228f2b821a67ed5e598d36e1c085e97080880a6596494777bb41c2b4c0","group_id":"dd630e228f2b821a67ed5e598d36e1c085e97080880a6596494777bb41c2b4c0","id":"INTERVALS-0007597","index":7597,"input":{"contigs":{"synthetic_A":1346,"synthetic_B":1175},"features":[{"basis":"one_closed","contig":"synthetic_B","end":93,"start":88,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":119,"start":92,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":122,"start":118,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":602,"start":553,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1014,"start":944,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":184,"start":84,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":602,"start":522,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":113,"start":106,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1074,"start":1045,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":62,"start":34,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1253,"start":1175,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":889,"start":779,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":119,"start":90,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[518,572],"query_length":54,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"a9dfa4fc717da2f172bb0214e33dea3fc659eadbb46a6d53df6f836d15a2cb61","group_id":"a9dfa4fc717da2f172bb0214e33dea3fc659eadbb46a6d53df6f836d15a2cb61","id":"INTERVALS-0007600","index":7600,"input":{"contigs":{"synthetic_A":1132,"synthetic_B":742},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":518,"start":506,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":576,"start":573,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":545,"start":536,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":166,"start":78,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":366,"start":342,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":800,"start":723,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":572,"start":518,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[316,348],"query_length":32,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"5189e6d25c72c53d8caab6253d8286a8bdf1d645e86b3f84fed45982993c186e","group_id":"5189e6d25c72c53d8caab6253d8286a8bdf1d645e86b3f84fed45982993c186e","id":"INTERVALS-0007625","index":7625,"input":{"contigs":{"synthetic_A":636,"synthetic_B":845},"features":[{"basis":"one_closed","contig":"synthetic_A","end":316,"start":309,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":359,"start":349,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":332,"start":243,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":442,"start":405,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":54,"start":18,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":795,"start":724,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":248,"start":147,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":368,"start":364,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":466,"start":416,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":126,"start":95,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":163,"start":118,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":405,"start":346,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":348,"start":317,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[699,773],"query_length":74,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"8b3562bcab6aefe2c2be7f662d24f88ce6c8d06657fa86ac1fb603eb3ec71f98","group_id":"8b3562bcab6aefe2c2be7f662d24f88ce6c8d06657fa86ac1fb603eb3ec71f98","id":"INTERVALS-0007630","index":7630,"input":{"contigs":{"synthetic_A":1633,"synthetic_B":1072},"features":[{"basis":"one_closed","contig":"synthetic_A","end":699,"start":687,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":802,"start":774,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":712,"start":673,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":57,"start":50,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1431,"start":1397,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":542,"start":475,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":560,"start":465,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":550,"start":450,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":258,"start":189,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":773,"start":700,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":56},{"feature_index":2,"overlap_bases":2}],"query_bed":[1184,1241],"query_length":57,"union_overlap_bases":57},"family":"overlapping_blocks","fingerprint":"96f663f85d609d64a66055fe749023a2cea819af5ccde0c1cbdf88c02b82fce9","group_id":"96f663f85d609d64a66055fe749023a2cea819af5ccde0c1cbdf88c02b82fce9","id":"INTERVALS-0007637","index":7637,"input":{"contigs":{"synthetic_A":1557,"synthetic_B":1659},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1187,"start":1182,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1241,"start":1186,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1244,"start":1239,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":460,"start":437,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":597,"start":548,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1375,"start":1341,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1241,"start":1185,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":19}],"query_bed":[265,284],"query_length":19,"union_overlap_bases":19},"family":"stranded","fingerprint":"79585fcc8e11fd52a171dc13c48cae7c234e6d43c419bbc550421f4e1adab01b","group_id":"79585fcc8e11fd52a171dc13c48cae7c234e6d43c419bbc550421f4e1adab01b","id":"INTERVALS-0007673","index":7673,"input":{"contigs":{"synthetic_A":1691,"synthetic_B":1340},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":284,"start":265,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":284,"start":266,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1455,"start":1410,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":298,"start":245,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":782,"start":690,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":712,"start":692,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":746,"start":703,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":527,"start":470,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":702,"start":634,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":623,"start":504,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":958,"start":838,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":284,"start":266,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":63},{"feature_index":1,"overlap_bases":61}],"query_bed":[68,131],"query_length":63,"union_overlap_bases":63},"family":"nested","fingerprint":"86b2a8da374597c81e793ea00d1cfd15cfd4b189eda9825d94b96b8a35f7b76c","group_id":"86b2a8da374597c81e793ea00d1cfd15cfd4b189eda9825d94b96b8a35f7b76c","id":"INTERVALS-0007681","index":7681,"input":{"contigs":{"synthetic_A":1438,"synthetic_B":905},"features":[{"basis":"one_closed","contig":"synthetic_A","end":136,"start":64,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":130,"start":69,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":663,"start":570,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":788,"start":706,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":700,"start":597,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1371,"start":1308,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":221,"start":148,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":704,"start":655,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1354,"start":1295,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":779,"start":729,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":79,"start":4,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":992,"start":958,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":131,"start":68,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":59},{"feature_index":2,"overlap_bases":20}],"query_bed":[172,231],"query_length":59,"union_overlap_bases":59},"family":"coordinate_conversion","fingerprint":"cce9303a1c8f9850ef4f88a240a81bf529fcbb1ec312b207f8db7cf74dd23bd2","group_id":"cce9303a1c8f9850ef4f88a240a81bf529fcbb1ec312b207f8db7cf74dd23bd2","id":"INTERVALS-0007689","index":7689,"input":{"contigs":{"synthetic_A":1566,"synthetic_B":746},"features":[{"basis":"one_closed","contig":"synthetic_B","end":231,"start":173,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1364,"start":1340,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":192,"start":122,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1240,"start":1136,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":496,"start":456,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1265,"start":1233,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":880,"start":801,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":231,"start":173,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":78},{"feature_index":1,"overlap_bases":76},{"feature_index":8,"overlap_bases":42}],"query_bed":[51,129],"query_length":78,"union_overlap_bases":78},"family":"nested","fingerprint":"f7b5c09ed21b93c971f05458d0006bb95d4f128540553d5818ddbaeb99f18e55","group_id":"f7b5c09ed21b93c971f05458d0006bb95d4f128540553d5818ddbaeb99f18e55","id":"INTERVALS-0007696","index":7696,"input":{"contigs":{"synthetic_A":1775,"synthetic_B":656},"features":[{"basis":"one_closed","contig":"synthetic_B","end":134,"start":47,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":128,"start":52,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":498,"start":478,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1078,"start":1066,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":456,"start":375,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":282,"start":174,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":915,"start":854,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":515,"start":491,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":162,"start":87,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":129,"start":52,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46},{"feature_index":3,"overlap_bases":46}],"query_bed":[88,134],"query_length":46,"union_overlap_bases":46},"family":"coordinate_conversion","fingerprint":"81218fe468bbcca23201cd280dfe36b5705c9ed6f690f73219c030c7187940a6","group_id":"81218fe468bbcca23201cd280dfe36b5705c9ed6f690f73219c030c7187940a6","id":"INTERVALS-0007714","index":7714,"input":{"contigs":{"synthetic_A":721,"synthetic_B":1534},"features":[{"basis":"one_closed","contig":"synthetic_A","end":134,"start":89,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":570,"start":568,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":823,"start":721,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":159,"start":75,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":376,"start":355,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":882,"start":799,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1135,"start":1088,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":201,"start":108,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":603,"start":510,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":321,"start":234,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":133,"start":83,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":449,"start":340,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":134,"start":89,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":9}],"query_bed":[180,189],"query_length":9,"union_overlap_bases":9},"family":"stranded","fingerprint":"28016204a0170114979ef3da45752b0f0296d1c98dd915d259732a9c563b4b3a","group_id":"28016204a0170114979ef3da45752b0f0296d1c98dd915d259732a9c563b4b3a","id":"INTERVALS-0007723","index":7723,"input":{"contigs":{"synthetic_A":1163,"synthetic_B":1217},"features":[{"basis":"one_closed","contig":"synthetic_B","end":189,"start":181,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":189,"start":180,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":540,"start":448,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":397,"start":302,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":640,"start":625,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":833,"start":792,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":182,"start":157,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":584,"start":584,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":189,"start":180,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":45}],"query_bed":[253,298],"query_length":45,"union_overlap_bases":45},"family":"coordinate_conversion","fingerprint":"a8fb5d6a174fd499a9068f7a8c28193b93fc671c12328832c72008f160e7e842","group_id":"a8fb5d6a174fd499a9068f7a8c28193b93fc671c12328832c72008f160e7e842","id":"INTERVALS-0007724","index":7724,"input":{"contigs":{"synthetic_A":882,"synthetic_B":1219},"features":[{"basis":"one_closed","contig":"synthetic_A","end":298,"start":254,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":631,"start":540,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":493,"start":442,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":679,"start":601,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":704,"start":670,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":56,"start":43,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":331,"start":254,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":739,"start":656,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":298,"start":254,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[157,214],"query_length":57,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"eb568f2c0c3aed0bada8bf089be76009a9e6840b6ff86337d0fc2cc7f92fba37","group_id":"eb568f2c0c3aed0bada8bf089be76009a9e6840b6ff86337d0fc2cc7f92fba37","id":"INTERVALS-0007725","index":7725,"input":{"contigs":{"synthetic_A":613,"synthetic_B":1478},"features":[{"basis":"one_closed","contig":"synthetic_A","end":157,"start":149,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":254,"start":215,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":80,"start":27,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":371,"start":257,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":19,"start":16,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":414,"start":310,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":318,"start":229,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":260,"start":257,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":214,"start":158,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":29},{"feature_index":2,"overlap_bases":2}],"query_bed":[378,408],"query_length":30,"union_overlap_bases":30},"family":"overlapping_blocks","fingerprint":"ecffeb2a157f1c675c5501f600f6f948bdeb44e99a4ebefa112cb224531bf276","group_id":"ecffeb2a157f1c675c5501f600f6f948bdeb44e99a4ebefa112cb224531bf276","id":"INTERVALS-0007742","index":7742,"input":{"contigs":{"synthetic_A":1356,"synthetic_B":1692},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":381,"start":375,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":408,"start":380,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":411,"start":407,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":248,"start":148,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":645,"start":551,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":911,"start":881,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1033,"start":928,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1263,"start":1227,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":408,"start":378,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[222,295],"query_length":73,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"609f7a1000123605aaf9d20c59dc40a1cb2b71eaf18270efb1e80e7fac534189","group_id":"609f7a1000123605aaf9d20c59dc40a1cb2b71eaf18270efb1e80e7fac534189","id":"INTERVALS-0007745","index":7745,"input":{"contigs":{"synthetic_A":874,"synthetic_B":1048},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":222,"start":209,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":335,"start":295,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":462,"start":457,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":417,"start":332,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":569,"start":487,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":349,"start":333,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":810,"start":711,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":386,"start":276,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":553,"start":512,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":568,"start":526,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":155,"start":79,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":146,"start":89,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":295,"start":223,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":47},{"feature_index":2,"overlap_bases":2}],"query_bed":[441,489],"query_length":48,"union_overlap_bases":48},"family":"overlapping_blocks","fingerprint":"ee2013ea8f41a18585b4f65c09987e778d7fb12f551820ce16ab9ad8b25b336e","group_id":"ee2013ea8f41a18585b4f65c09987e778d7fb12f551820ce16ab9ad8b25b336e","id":"INTERVALS-0007752","index":7752,"input":{"contigs":{"synthetic_A":1172,"synthetic_B":659},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":444,"start":438,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":489,"start":443,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":492,"start":487,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":317,"start":296,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1001,"start":959,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":156,"start":43,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":107,"start":85,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":136,"start":74,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1094,"start":993,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":68,"start":42,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":489,"start":442,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1015,1067],"query_length":52,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"4c110a827c6addbe3a3ece5847f7ef743676e82f7f3b9ecc4eb01a9d3ddf8fcf","group_id":"4c110a827c6addbe3a3ece5847f7ef743676e82f7f3b9ecc4eb01a9d3ddf8fcf","id":"INTERVALS-0007755","index":7755,"input":{"contigs":{"synthetic_A":1485,"synthetic_B":1738},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1015,"start":996,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1104,"start":1068,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":726,"start":639,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":722,"start":677,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":763,"start":695,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1129,"start":1058,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":75,"start":55,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1067,"start":1016,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":36},{"feature_index":2,"overlap_bases":2}],"query_bed":[247,284],"query_length":37,"union_overlap_bases":37},"family":"overlapping_blocks","fingerprint":"30b592085951ace3e102b32586cc78ee4a0c6c4161130e9e51a6daa305d27edf","group_id":"30b592085951ace3e102b32586cc78ee4a0c6c4161130e9e51a6daa305d27edf","id":"INTERVALS-0007757","index":7757,"input":{"contigs":{"synthetic_A":1016,"synthetic_B":1649},"features":[{"basis":"one_closed","contig":"synthetic_A","end":250,"start":245,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":284,"start":249,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":287,"start":283,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":102,"start":3,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":712,"start":694,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":422,"start":325,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1348,"start":1344,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":695,"start":671,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":593,"start":491,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":715,"start":706,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":968,"start":932,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":284,"start":248,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":9}],"query_bed":[262,271],"query_length":9,"union_overlap_bases":9},"family":"coordinate_conversion","fingerprint":"e3e30252afcf13db787628ea609e1123c7210f4c5460ce1580143cb4eb7f0280","group_id":"e3e30252afcf13db787628ea609e1123c7210f4c5460ce1580143cb4eb7f0280","id":"INTERVALS-0007759","index":7759,"input":{"contigs":{"synthetic_A":1479,"synthetic_B":694},"features":[{"basis":"one_closed","contig":"synthetic_B","end":271,"start":263,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1320,"start":1266,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":520,"start":411,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":475,"start":415,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1243,"start":1185,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1194,"start":1172,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1174,"start":1090,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":283,"start":278,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":271,"start":263,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46}],"query_bed":[521,567],"query_length":46,"union_overlap_bases":46},"family":"stranded","fingerprint":"88c5f28075802374e1f5d3ca5aa433f753699b677c143d85ea56bf112eba2388","group_id":"88c5f28075802374e1f5d3ca5aa433f753699b677c143d85ea56bf112eba2388","id":"INTERVALS-0007773","index":7773,"input":{"contigs":{"synthetic_A":1697,"synthetic_B":1066},"features":[{"basis":"one_closed","contig":"synthetic_B","end":567,"start":522,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":567,"start":522,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":449,"start":402,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":335,"start":246,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":245,"start":198,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":829,"start":805,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":211,"start":187,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":567,"start":522,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":8},{"feature_index":2,"overlap_bases":2},{"feature_index":6,"overlap_bases":9}],"query_bed":[203,212],"query_length":9,"union_overlap_bases":9},"family":"overlapping_blocks","fingerprint":"b110dae896be8bd837513b05a11e3d17e287a459b41991f658d099597ff1dc4c","group_id":"b110dae896be8bd837513b05a11e3d17e287a459b41991f658d099597ff1dc4c","id":"INTERVALS-0007782","index":7782,"input":{"contigs":{"synthetic_A":1060,"synthetic_B":1068},"features":[{"basis":"one_closed","contig":"synthetic_B","end":206,"start":201,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":212,"start":204,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":215,"start":210,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":371,"start":284,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":438,"start":366,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":954,"start":834,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":256,"start":178,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":748,"start":652,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":808,"start":723,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":875,"start":796,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":212,"start":204,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":56},{"feature_index":5,"overlap_bases":56}],"query_bed":[1153,1209],"query_length":56,"union_overlap_bases":56},"family":"stranded","fingerprint":"749b9a1cc3d0180649230a2f0d6c830d65041cb9c6f641d5ab8d5a749a913a49","group_id":"749b9a1cc3d0180649230a2f0d6c830d65041cb9c6f641d5ab8d5a749a913a49","id":"INTERVALS-0007783","index":7783,"input":{"contigs":{"synthetic_A":1260,"synthetic_B":1360},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1209,"start":1153,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1209,"start":1154,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":365,"start":345,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1194,"start":1085,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":654,"start":578,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1211,"start":1150,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":787,"start":770,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1209,"start":1153,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":43},{"feature_index":1,"overlap_bases":41}],"query_bed":[216,259],"query_length":43,"union_overlap_bases":43},"family":"nested","fingerprint":"1d439670550225e024c94a34376fb82299d65ea7e01a8109ee8a06a40c17f4ce","group_id":"1d439670550225e024c94a34376fb82299d65ea7e01a8109ee8a06a40c17f4ce","id":"INTERVALS-0007786","index":7786,"input":{"contigs":{"synthetic_A":1293,"synthetic_B":1219},"features":[{"basis":"one_closed","contig":"synthetic_B","end":264,"start":212,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":258,"start":217,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":995,"start":878,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":933,"start":855,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":33,"start":31,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":142,"start":132,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":379,"start":324,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":658,"start":587,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":128,"start":83,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":98,"start":22,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":259,"start":217,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":15},{"feature_index":2,"overlap_bases":2}],"query_bed":[284,300],"query_length":16,"union_overlap_bases":16},"family":"overlapping_blocks","fingerprint":"6dafe91a5a6a17ba067af826d2665d83bf679cc252126559791d858433827484","group_id":"6dafe91a5a6a17ba067af826d2665d83bf679cc252126559791d858433827484","id":"INTERVALS-0007787","index":7787,"input":{"contigs":{"synthetic_A":725,"synthetic_B":731},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":287,"start":281,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":300,"start":285,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":303,"start":298,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":225,"start":218,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":76,"start":51,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":92,"start":64,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":597,"start":497,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":388,"start":277,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":300,"start":285,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":55},{"feature_index":1,"overlap_bases":53}],"query_bed":[590,645],"query_length":55,"union_overlap_bases":55},"family":"nested","fingerprint":"dbec20b07e4758239e577f2c2fbf8920185472e0ab6accb49cacf9a78651f28c","group_id":"dbec20b07e4758239e577f2c2fbf8920185472e0ab6accb49cacf9a78651f28c","id":"INTERVALS-0007796","index":7796,"input":{"contigs":{"synthetic_A":1543,"synthetic_B":1157},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":650,"start":585,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":644,"start":591,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":425,"start":393,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":438,"start":361,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":798,"start":773,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1086,"start":1073,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":569,"start":457,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":613,"start":527,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":163,"start":62,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":730,"start":679,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":645,"start":590,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":21},{"feature_index":2,"overlap_bases":2}],"query_bed":[568,590],"query_length":22,"union_overlap_bases":22},"family":"overlapping_blocks","fingerprint":"c5a9f2e66d8fe461091d102acb6b64f60bbf5094c09cf17857ef0b9637b25b6a","group_id":"c5a9f2e66d8fe461091d102acb6b64f60bbf5094c09cf17857ef0b9637b25b6a","id":"INTERVALS-0007797","index":7797,"input":{"contigs":{"synthetic_A":1182,"synthetic_B":1671},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":571,"start":565,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":590,"start":570,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":593,"start":588,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1194,"start":1079,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":961,"start":879,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":106,"start":14,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":904,"start":816,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":439,"start":422,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":188,"start":166,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":483,"start":366,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1023,"start":931,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":981,"start":864,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":590,"start":569,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":31}],"query_bed":[68,99],"query_length":31,"union_overlap_bases":31},"family":"stranded","fingerprint":"ec274400ac2c62fd8e510f1303af8796e927806a07ec8464fee375a2ae2bc22b","group_id":"ec274400ac2c62fd8e510f1303af8796e927806a07ec8464fee375a2ae2bc22b","id":"INTERVALS-0007803","index":7803,"input":{"contigs":{"synthetic_A":1099,"synthetic_B":1748},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":99,"start":68,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":99,"start":69,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":562,"start":526,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1652,"start":1568,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":534,"start":514,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":69,"start":6,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1006,"start":973,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":502,"start":389,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":62,"start":9,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":299,"start":278,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1177,"start":1088,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":99,"start":69,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":62},{"feature_index":2,"overlap_bases":2}],"query_bed":[484,547],"query_length":63,"union_overlap_bases":63},"family":"overlapping_blocks","fingerprint":"b308470ac6127bf216a853f2d16272a342b5fd7355b1361bb2740f124d2490e1","group_id":"b308470ac6127bf216a853f2d16272a342b5fd7355b1361bb2740f124d2490e1","id":"INTERVALS-0007857","index":7857,"input":{"contigs":{"synthetic_A":1116,"synthetic_B":885},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":487,"start":481,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":547,"start":485,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":550,"start":545,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1095,"start":979,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":328,"start":254,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":547,"start":485,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[255,267],"query_length":12,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"a1605a88aa7f47a8e967017c51b679e2b90e28b1e621d48503c84f762bf1404f","group_id":"a1605a88aa7f47a8e967017c51b679e2b90e28b1e621d48503c84f762bf1404f","id":"INTERVALS-0007880","index":7880,"input":{"contigs":{"synthetic_A":844,"synthetic_B":739},"features":[{"basis":"one_closed","contig":"synthetic_A","end":255,"start":250,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":280,"start":268,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":501,"start":392,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":357,"start":304,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":396,"start":335,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":52,"start":28,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":327,"start":243,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":228,"start":119,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":72,"start":20,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":267,"start":255,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":44}],"query_bed":[853,897],"query_length":44,"union_overlap_bases":44},"family":"coordinate_conversion","fingerprint":"7b5838f624c47b77df24b475f822f0a23c9530a97c76cc4ec8e9a8e490abc499","group_id":"7b5838f624c47b77df24b475f822f0a23c9530a97c76cc4ec8e9a8e490abc499","id":"INTERVALS-0007884","index":7884,"input":{"contigs":{"synthetic_A":1336,"synthetic_B":1390},"features":[{"basis":"one_closed","contig":"synthetic_B","end":897,"start":854,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1088,"start":1045,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":324,"start":232,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1276,"start":1201,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":921,"start":920,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":897,"start":854,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[155,188],"query_length":33,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"8106661afbf837fd72ec668e232eb897f1e33fa104b2ec528de1f5d196939b30","group_id":"8106661afbf837fd72ec668e232eb897f1e33fa104b2ec528de1f5d196939b30","id":"INTERVALS-0007890","index":7890,"input":{"contigs":{"synthetic_A":702,"synthetic_B":769},"features":[{"basis":"one_closed","contig":"synthetic_A","end":155,"start":137,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":200,"start":189,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":586,"start":542,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":279,"start":236,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":248,"start":147,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":526,"start":426,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":441,"start":426,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":500,"start":382,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":640,"start":527,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":366,"start":263,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":188,"start":156,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":62}],"query_bed":[1356,1418],"query_length":62,"union_overlap_bases":62},"family":"stranded","fingerprint":"98f9f5e87ae51b8306d8922403d4d49ffd90eafe304a5dee9323e7339d0473ed","group_id":"98f9f5e87ae51b8306d8922403d4d49ffd90eafe304a5dee9323e7339d0473ed","id":"INTERVALS-0007903","index":7903,"input":{"contigs":{"synthetic_A":1568,"synthetic_B":1776},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1418,"start":1357,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1418,"start":1356,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":234,"start":139,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1294,"start":1238,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":569,"start":552,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":420,"start":320,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":666,"start":558,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1068,"start":1028,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1418,"start":1356,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46},{"feature_index":1,"overlap_bases":44}],"query_bed":[639,685],"query_length":46,"union_overlap_bases":46},"family":"nested","fingerprint":"eea6ddc6f7b61c1724a54594eb1b6456d57577c77ae6694846225b2a553ac578","group_id":"eea6ddc6f7b61c1724a54594eb1b6456d57577c77ae6694846225b2a553ac578","id":"INTERVALS-0007911","index":7911,"input":{"contigs":{"synthetic_A":1591,"synthetic_B":1796},"features":[{"basis":"one_closed","contig":"synthetic_B","end":690,"start":635,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":684,"start":640,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1516,"start":1452,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":270,"start":181,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1246,"start":1136,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":262,"start":198,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":896,"start":795,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":825,"start":793,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1148,"start":1034,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":685,"start":639,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":25}],"query_bed":[378,403],"query_length":25,"union_overlap_bases":25},"family":"coordinate_conversion","fingerprint":"641781e296738ef05dbf0393839f941e0d64a0126aa5dfda228c35462713bd8c","group_id":"641781e296738ef05dbf0393839f941e0d64a0126aa5dfda228c35462713bd8c","id":"INTERVALS-0007914","index":7914,"input":{"contigs":{"synthetic_A":987,"synthetic_B":1163},"features":[{"basis":"one_closed","contig":"synthetic_A","end":403,"start":379,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":271,"start":253,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":135,"start":107,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":594,"start":588,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":671,"start":616,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":705,"start":595,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":672,"start":582,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":956,"start":874,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":116,"start":106,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":757,"start":720,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":353,"start":334,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":736,"start":661,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":403,"start":379,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":45}],"query_bed":[604,649],"query_length":45,"union_overlap_bases":45},"family":"stranded","fingerprint":"e1a211903b828101b849aa8811d7681490677a6133deb109ada6cc44b77804a2","group_id":"e1a211903b828101b849aa8811d7681490677a6133deb109ada6cc44b77804a2","id":"INTERVALS-0007923","index":7923,"input":{"contigs":{"synthetic_A":1140,"synthetic_B":1468},"features":[{"basis":"one_closed","contig":"synthetic_A","end":649,"start":605,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":649,"start":604,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":980,"start":934,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":771,"start":680,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":196,"start":149,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":920,"start":842,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":446,"start":375,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":649,"start":604,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":8},{"feature_index":1,"overlap_bases":6}],"query_bed":[587,595],"query_length":8,"union_overlap_bases":8},"family":"nested","fingerprint":"5f8c1ab6efe6edb6c31e35e293a91c011e869a3a184b0f9201712ba6836b14db","group_id":"5f8c1ab6efe6edb6c31e35e293a91c011e869a3a184b0f9201712ba6836b14db","id":"INTERVALS-0007946","index":7946,"input":{"contigs":{"synthetic_A":1494,"synthetic_B":1157},"features":[{"basis":"one_closed","contig":"synthetic_A","end":600,"start":583,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":594,"start":589,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1082,"start":1050,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":175,"start":59,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":593,"start":544,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1360,"start":1327,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":551,"start":544,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":853,"start":812,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":947,"start":913,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":844,"start":782,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":817,"start":791,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":595,"start":587,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":75}],"query_bed":[562,637],"query_length":75,"union_overlap_bases":75},"family":"coordinate_conversion","fingerprint":"459d679af8740f7c6fda4fa88ae26f0317a719d94fd1bc1abca05be8ca780d1f","group_id":"459d679af8740f7c6fda4fa88ae26f0317a719d94fd1bc1abca05be8ca780d1f","id":"INTERVALS-0007949","index":7949,"input":{"contigs":{"synthetic_A":1639,"synthetic_B":786},"features":[{"basis":"one_closed","contig":"synthetic_B","end":637,"start":563,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":177,"start":128,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":81,"start":59,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":61,"start":61,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":379,"start":355,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":599,"start":483,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":189,"start":81,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":245,"start":207,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":366,"start":258,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":650,"start":559,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":637,"start":563,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":35},{"feature_index":2,"overlap_bases":2}],"query_bed":[418,454],"query_length":36,"union_overlap_bases":36},"family":"overlapping_blocks","fingerprint":"ff23830cd90c2f6b6b36d2f488a43af9d22ce208a0f600b2e967af628a28e3ff","group_id":"ff23830cd90c2f6b6b36d2f488a43af9d22ce208a0f600b2e967af628a28e3ff","id":"INTERVALS-0007962","index":7962,"input":{"contigs":{"synthetic_A":784,"synthetic_B":818},"features":[{"basis":"one_closed","contig":"synthetic_A","end":421,"start":416,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":454,"start":419,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":457,"start":453,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":348,"start":299,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":381,"start":263,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":454,"start":418,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":17}],"query_bed":[1039,1056],"query_length":17,"union_overlap_bases":17},"family":"coordinate_conversion","fingerprint":"1334d13afcc8a9c5291c2433a5f6a0c97da3b8224b5bc6373f44348ffbaa5258","group_id":"1334d13afcc8a9c5291c2433a5f6a0c97da3b8224b5bc6373f44348ffbaa5258","id":"INTERVALS-0007969","index":7969,"input":{"contigs":{"synthetic_A":1789,"synthetic_B":1454},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1056,"start":1040,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":280,"start":233,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1561,"start":1528,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":646,"start":615,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1217,"start":1127,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1527,"start":1451,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":521,"start":417,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":128,"start":117,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":157,"start":155,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":371,"start":271,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":697,"start":614,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1056,"start":1040,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":29},{"feature_index":2,"overlap_bases":2}],"query_bed":[277,307],"query_length":30,"union_overlap_bases":30},"family":"overlapping_blocks","fingerprint":"f584a9b6627c4a38b2a11a5f43486b2f2726cc40607125825f700a45948e5ca4","group_id":"f584a9b6627c4a38b2a11a5f43486b2f2726cc40607125825f700a45948e5ca4","id":"INTERVALS-0007972","index":7972,"input":{"contigs":{"synthetic_A":829,"synthetic_B":1757},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":280,"start":274,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":307,"start":278,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":310,"start":306,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":375,"start":334,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":221,"start":109,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1411,"start":1345,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":243,"start":225,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1089,"start":1018,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1118,"start":1099,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1382,"start":1306,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":587,"start":557,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":307,"start":277,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":52}],"query_bed":[427,479],"query_length":52,"union_overlap_bases":52},"family":"stranded","fingerprint":"da4cb3320cbd8250905f8f4ef61e7ab87656d4b45c1479e53cbfe2056a2c0c6d","group_id":"da4cb3320cbd8250905f8f4ef61e7ab87656d4b45c1479e53cbfe2056a2c0c6d","id":"INTERVALS-0007988","index":7988,"input":{"contigs":{"synthetic_A":1064,"synthetic_B":1180},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":479,"start":427,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":479,"start":428,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1108,"start":999,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":718,"start":686,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":896,"start":837,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":733,"start":664,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":32,"start":2,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":498,"start":431,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1038,"start":1034,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":512,"start":419,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":297,"start":265,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":479,"start":428,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":6},{"feature_index":2,"overlap_bases":2}],"query_bed":[580,587],"query_length":7,"union_overlap_bases":7},"family":"overlapping_blocks","fingerprint":"78c9bab0b1a46ee80d6ce11525a0263bb7721d69913f3bb4af0f32e7ff477539","group_id":"78c9bab0b1a46ee80d6ce11525a0263bb7721d69913f3bb4af0f32e7ff477539","id":"INTERVALS-0007992","index":7992,"input":{"contigs":{"synthetic_A":1471,"synthetic_B":1024},"features":[{"basis":"one_closed","contig":"synthetic_B","end":583,"start":578,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":587,"start":582,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":590,"start":586,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":811,"start":728,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1336,"start":1222,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":121,"start":34,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":587,"start":580,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":33}],"query_bed":[413,446],"query_length":33,"union_overlap_bases":33},"family":"stranded","fingerprint":"3a803cca376a497f7ab97740cb9051605939f4f78ab23272d4b36580e5eef482","group_id":"3a803cca376a497f7ab97740cb9051605939f4f78ab23272d4b36580e5eef482","id":"INTERVALS-0008003","index":8003,"input":{"contigs":{"synthetic_A":780,"synthetic_B":1774},"features":[{"basis":"one_closed","contig":"synthetic_A","end":446,"start":414,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":446,"start":413,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1201,"start":1184,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1260,"start":1185,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":307,"start":269,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":75,"start":35,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":265,"start":170,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":339,"start":313,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":687,"start":572,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":446,"start":414,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":59}],"query_bed":[1085,1144],"query_length":59,"union_overlap_bases":59},"family":"coordinate_conversion","fingerprint":"8d2e7810327f1908602297ceb5f0b93079983d6340b111a417ed05a66b88bd34","group_id":"8d2e7810327f1908602297ceb5f0b93079983d6340b111a417ed05a66b88bd34","id":"INTERVALS-0008009","index":8009,"input":{"contigs":{"synthetic_A":1652,"synthetic_B":1074},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1144,"start":1086,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":565,"start":448,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1011,"start":916,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":242,"start":237,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1270,"start":1184,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":483,"start":445,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":269,"start":241,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":676,"start":626,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1144,"start":1086,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":42},{"feature_index":2,"overlap_bases":2}],"query_bed":[189,232],"query_length":43,"union_overlap_bases":43},"family":"overlapping_blocks","fingerprint":"44592a4a9cc50ffc534cd7dae79df305a5b34655b64eb6b4b1f8ed8916ab4551","group_id":"44592a4a9cc50ffc534cd7dae79df305a5b34655b64eb6b4b1f8ed8916ab4551","id":"INTERVALS-0008017","index":8017,"input":{"contigs":{"synthetic_A":1243,"synthetic_B":828},"features":[{"basis":"one_closed","contig":"synthetic_A","end":192,"start":187,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":232,"start":191,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":235,"start":231,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":568,"start":480,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":82,"start":53,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1145,"start":1094,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":560,"start":497,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":398,"start":330,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":87,"start":31,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":401,"start":344,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":232,"start":189,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":17},{"feature_index":1,"overlap_bases":15}],"query_bed":[84,101],"query_length":17,"union_overlap_bases":17},"family":"nested","fingerprint":"3070aa08a88dd95e0bc68380504994b5639413f9a56f398cef41514fe8b9082e","group_id":"3070aa08a88dd95e0bc68380504994b5639413f9a56f398cef41514fe8b9082e","id":"INTERVALS-0008026","index":8026,"input":{"contigs":{"synthetic_A":1323,"synthetic_B":990},"features":[{"basis":"one_closed","contig":"synthetic_A","end":106,"start":80,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":100,"start":86,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":604,"start":531,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":653,"start":628,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":335,"start":284,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1011,"start":892,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":455,"start":413,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":101,"start":85,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":22}],"query_bed":[867,889],"query_length":22,"union_overlap_bases":22},"family":"stranded","fingerprint":"f664cac8d05c0c96d94601540a8e31913a33021c6497e6e1612a46aee2e536d6","group_id":"f664cac8d05c0c96d94601540a8e31913a33021c6497e6e1612a46aee2e536d6","id":"INTERVALS-0008028","index":8028,"input":{"contigs":{"synthetic_A":984,"synthetic_B":1533},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":889,"start":867,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":889,"start":867,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":401,"start":319,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":543,"start":532,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1113,"start":1054,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":658,"start":586,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":412,"start":312,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":589,"start":483,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":889,"start":867,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32}],"query_bed":[679,711],"query_length":32,"union_overlap_bases":32},"family":"coordinate_conversion","fingerprint":"522ff3429387722601f072ab9263c86868f43d1feb04d00267da5e0cae3f9580","group_id":"522ff3429387722601f072ab9263c86868f43d1feb04d00267da5e0cae3f9580","id":"INTERVALS-0008044","index":8044,"input":{"contigs":{"synthetic_A":786,"synthetic_B":879},"features":[{"basis":"one_closed","contig":"synthetic_B","end":711,"start":680,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":684,"start":666,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":235,"start":156,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":408,"start":292,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":554,"start":462,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":411,"start":386,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":96,"start":4,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":542,"start":515,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":165,"start":93,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":536,"start":496,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":450,"start":337,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":711,"start":680,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":5},{"feature_index":2,"overlap_bases":2}],"query_bed":[120,126],"query_length":6,"union_overlap_bases":6},"family":"overlapping_blocks","fingerprint":"f59586f0962cfe7a3501e1f1d170f654a9d1f324419169b52b96855cd91fc82a","group_id":"f59586f0962cfe7a3501e1f1d170f654a9d1f324419169b52b96855cd91fc82a","id":"INTERVALS-0008052","index":8052,"input":{"contigs":{"synthetic_A":1161,"synthetic_B":1267},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":123,"start":117,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":126,"start":122,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":129,"start":125,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":640,"start":554,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":602,"start":578,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":126,"start":121,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":5}],"query_bed":[1137,1142],"query_length":5,"union_overlap_bases":5},"family":"coordinate_conversion","fingerprint":"2b9cc412dea60d4482cb286fd4ffbc8b00479dd371b9c0645d1c73f660334755","group_id":"2b9cc412dea60d4482cb286fd4ffbc8b00479dd371b9c0645d1c73f660334755","id":"INTERVALS-0008064","index":8064,"input":{"contigs":{"synthetic_A":619,"synthetic_B":1740},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1142,"start":1138,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":144,"start":78,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":839,"start":792,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1493,"start":1477,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1658,"start":1594,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":858,"start":783,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":391,"start":302,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1142,"start":1138,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":10}],"query_bed":[1328,1338],"query_length":10,"union_overlap_bases":10},"family":"coordinate_conversion","fingerprint":"42b7c23cbabba6298b7d11b1e06cfd09dc6c8f0b0b7f86c59577b0cb996c1993","group_id":"42b7c23cbabba6298b7d11b1e06cfd09dc6c8f0b0b7f86c59577b0cb996c1993","id":"INTERVALS-0008074","index":8074,"input":{"contigs":{"synthetic_A":1342,"synthetic_B":1657},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1338,"start":1329,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1143,"start":1033,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":457,"start":393,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1090,"start":1033,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":402,"start":328,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":149,"start":110,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":393,"start":341,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":626,"start":600,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":150,"start":54,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":553,"start":445,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":273,"start":167,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1338,"start":1329,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":3,"overlap_bases":6}],"query_bed":[462,521],"query_length":59,"union_overlap_bases":6},"family":"touching_boundary","fingerprint":"7005cb8079be7b1ba8c4a55d69baf09fb61b1c52293d34782a32402ed74e7037","group_id":"7005cb8079be7b1ba8c4a55d69baf09fb61b1c52293d34782a32402ed74e7037","id":"INTERVALS-0008100","index":8100,"input":{"contigs":{"synthetic_A":670,"synthetic_B":754},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":462,"start":453,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":530,"start":522,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":105,"start":80,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":468,"start":374,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":109,"start":39,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":426,"start":394,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":432,"start":409,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":169,"start":127,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":603,"start":548,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":281,"start":239,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":521,"start":463,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":18}],"query_bed":[310,328],"query_length":18,"union_overlap_bases":18},"family":"stranded","fingerprint":"5c5ce744a4f69275700c8d6475fec339609908dc90ed84a6cb5766dba79c4f48","group_id":"5c5ce744a4f69275700c8d6475fec339609908dc90ed84a6cb5766dba79c4f48","id":"INTERVALS-0008113","index":8113,"input":{"contigs":{"synthetic_A":1262,"synthetic_B":671},"features":[{"basis":"one_closed","contig":"synthetic_A","end":328,"start":311,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":328,"start":311,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":584,"start":535,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":386,"start":355,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1133,"start":1086,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":146,"start":37,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1152,"start":1083,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":415,"start":386,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":39,"start":31,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":547,"start":451,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":430,"start":422,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":328,"start":311,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":6,"overlap_bases":22}],"query_bed":[648,670],"query_length":22,"union_overlap_bases":22},"family":"touching_boundary","fingerprint":"a7ea0340ea8bc889690ac95d1cd72b2d048411bfc2fd8fb367ecc7f3f14cb1b0","group_id":"a7ea0340ea8bc889690ac95d1cd72b2d048411bfc2fd8fb367ecc7f3f14cb1b0","id":"INTERVALS-0008120","index":8120,"input":{"contigs":{"synthetic_A":841,"synthetic_B":1671},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":648,"start":639,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":701,"start":670,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":775,"start":709,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":78,"start":10,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":202,"start":143,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1615,"start":1496,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":720,"start":611,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":245,"start":161,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":962,"start":886,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1556,"start":1450,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1000,"start":977,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":670,"start":648,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":4},{"feature_index":2,"overlap_bases":2}],"query_bed":[626,631],"query_length":5,"union_overlap_bases":5},"family":"overlapping_blocks","fingerprint":"17d5b1d2c4d9223b29d06fe57bbef3661ce1450fb99d93026069a58c8fd6d0db","group_id":"17d5b1d2c4d9223b29d06fe57bbef3661ce1450fb99d93026069a58c8fd6d0db","id":"INTERVALS-0008142","index":8142,"input":{"contigs":{"synthetic_A":894,"synthetic_B":1471},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":629,"start":623,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":631,"start":627,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":634,"start":630,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":828,"start":763,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":22,"start":4,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":119,"start":80,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":631,"start":627,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":17},{"feature_index":2,"overlap_bases":17}],"query_bed":[691,708],"query_length":17,"union_overlap_bases":17},"family":"stranded","fingerprint":"eabe3ccc28fc2696aa13de6053a0598f3850e9826941dfdd3804ddb9a8068a4d","group_id":"eabe3ccc28fc2696aa13de6053a0598f3850e9826941dfdd3804ddb9a8068a4d","id":"INTERVALS-0008143","index":8143,"input":{"contigs":{"synthetic_A":982,"synthetic_B":1718},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":708,"start":691,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":708,"start":691,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":750,"start":638,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":557,"start":465,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":795,"start":743,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":205,"start":165,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1664,"start":1582,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":708,"start":692,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":54},{"feature_index":2,"overlap_bases":2}],"query_bed":[394,449],"query_length":55,"union_overlap_bases":55},"family":"overlapping_blocks","fingerprint":"96599b90b9ff617b649fcc831a15b4df952ccedec949a658d291c4b7ced2695b","group_id":"96599b90b9ff617b649fcc831a15b4df952ccedec949a658d291c4b7ced2695b","id":"INTERVALS-0008147","index":8147,"input":{"contigs":{"synthetic_A":1497,"synthetic_B":1024},"features":[{"basis":"one_closed","contig":"synthetic_B","end":397,"start":392,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":449,"start":395,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":452,"start":448,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1255,"start":1206,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":893,"start":876,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":341,"start":242,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":545,"start":482,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":449,"start":395,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":5},{"feature_index":2,"overlap_bases":2}],"query_bed":[853,859],"query_length":6,"union_overlap_bases":6},"family":"overlapping_blocks","fingerprint":"af3c874497200405a1169372cdcbbb93842410318272fd5aaf1ce7516b94b2ce","group_id":"af3c874497200405a1169372cdcbbb93842410318272fd5aaf1ce7516b94b2ce","id":"INTERVALS-0008157","index":8157,"input":{"contigs":{"synthetic_A":615,"synthetic_B":1075},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":856,"start":850,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":859,"start":854,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":862,"start":857,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":188,"start":177,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":204,"start":137,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":859,"start":853,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46}],"query_bed":[210,256],"query_length":46,"union_overlap_bases":46},"family":"coordinate_conversion","fingerprint":"7aef6f2ee531638a538652e40bb23af16825018085d23b3ba4cfd0e78ef5feed","group_id":"7aef6f2ee531638a538652e40bb23af16825018085d23b3ba4cfd0e78ef5feed","id":"INTERVALS-0008159","index":8159,"input":{"contigs":{"synthetic_A":763,"synthetic_B":1594},"features":[{"basis":"one_closed","contig":"synthetic_A","end":256,"start":211,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1206,"start":1158,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":508,"start":503,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":497,"start":394,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1053,"start":1001,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":523,"start":508,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":299,"start":294,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":85,"start":26,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":239,"start":168,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":256,"start":211,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":35},{"feature_index":1,"overlap_bases":33}],"query_bed":[1388,1423],"query_length":35,"union_overlap_bases":35},"family":"nested","fingerprint":"6b1be820bc5c453c9815697bd87bb80b5fafcc6ce5a37570f914cb6c3f8b93c8","group_id":"6b1be820bc5c453c9815697bd87bb80b5fafcc6ce5a37570f914cb6c3f8b93c8","id":"INTERVALS-0008166","index":8166,"input":{"contigs":{"synthetic_A":1271,"synthetic_B":1735},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1428,"start":1384,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1422,"start":1390,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1080,"start":1021,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":874,"start":794,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":489,"start":452,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":626,"start":567,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":850,"start":796,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1149,"start":1036,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":270,"start":268,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":422,"start":361,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1606,"start":1491,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":590,"start":536,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1423,"start":1388,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":13},{"feature_index":2,"overlap_bases":2}],"query_bed":[398,412],"query_length":14,"union_overlap_bases":14},"family":"overlapping_blocks","fingerprint":"1594c160bb9b22448c76a3b1ab006da055a166c2b4feff671b08e96564ec0924","group_id":"1594c160bb9b22448c76a3b1ab006da055a166c2b4feff671b08e96564ec0924","id":"INTERVALS-0008187","index":8187,"input":{"contigs":{"synthetic_A":1279,"synthetic_B":925},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":401,"start":395,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":412,"start":400,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":415,"start":411,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":835,"start":781,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":508,"start":445,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1183,"start":1137,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":229,"start":178,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":89,"start":3,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":412,"start":399,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":71}],"query_bed":[1233,1304],"query_length":71,"union_overlap_bases":71},"family":"coordinate_conversion","fingerprint":"85787238a1f1a8ee58825c715eaf219ea124e6b9a3213d02dabae314768e33b1","group_id":"85787238a1f1a8ee58825c715eaf219ea124e6b9a3213d02dabae314768e33b1","id":"INTERVALS-0008194","index":8194,"input":{"contigs":{"synthetic_A":929,"synthetic_B":1633},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1304,"start":1234,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1398,"start":1330,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":178,"start":93,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":129,"start":128,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":268,"start":212,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":799,"start":736,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":266,"start":175,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":302,"start":264,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1304,"start":1234,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":2,"overlap_bases":40},{"feature_index":6,"overlap_bases":29}],"query_bed":[731,777],"query_length":46,"union_overlap_bases":40},"family":"touching_boundary","fingerprint":"784f8ca4b24ccda8eb32b2d3e7998f2f7b906f377b4f1de6cb843bdaf0dd8390","group_id":"784f8ca4b24ccda8eb32b2d3e7998f2f7b906f377b4f1de6cb843bdaf0dd8390","id":"INTERVALS-0008195","index":8195,"input":{"contigs":{"synthetic_A":1771,"synthetic_B":1080},"features":[{"basis":"one_closed","contig":"synthetic_B","end":731,"start":721,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":801,"start":777,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":771,"start":713,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":246,"start":241,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":944,"start":825,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":150,"start":47,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":760,"start":721,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":777,"start":731,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":75},{"feature_index":6,"overlap_bases":21}],"query_bed":[449,524],"query_length":75,"union_overlap_bases":75},"family":"stranded","fingerprint":"f7e315582560a3c3c0470f85847bc36b494587df908b326174b8ad16d63dd7ba","group_id":"f7e315582560a3c3c0470f85847bc36b494587df908b326174b8ad16d63dd7ba","id":"INTERVALS-0008203","index":8203,"input":{"contigs":{"synthetic_A":1403,"synthetic_B":928},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":524,"start":449,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":524,"start":449,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":935,"start":915,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":247,"start":179,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1243,"start":1135,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":609,"start":556,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":470,"start":408,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":574,"start":543,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":524,"start":449,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":61},{"feature_index":1,"overlap_bases":59}],"query_bed":[896,957],"query_length":61,"union_overlap_bases":61},"family":"nested","fingerprint":"3d1d87bc2347e4c4ffa87006f0e9978c5c2562a38f30adb3d7fa57d96917a795","group_id":"3d1d87bc2347e4c4ffa87006f0e9978c5c2562a38f30adb3d7fa57d96917a795","id":"INTERVALS-0008226","index":8226,"input":{"contigs":{"synthetic_A":1227,"synthetic_B":1799},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":962,"start":891,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":956,"start":898,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1369,"start":1262,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1678,"start":1627,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1097,"start":1091,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":244,"start":176,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1628,"start":1575,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":366,"start":265,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":606,"start":500,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1474,"start":1472,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":469,"start":423,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":433,"start":409,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":957,"start":896,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":56}],"query_bed":[49,105],"query_length":56,"union_overlap_bases":56},"family":"stranded","fingerprint":"11aae1e2daa0454e205217d9d2e4b7c8e6d737652281df67254446b13f62a26c","group_id":"11aae1e2daa0454e205217d9d2e4b7c8e6d737652281df67254446b13f62a26c","id":"INTERVALS-0008228","index":8228,"input":{"contigs":{"synthetic_A":1005,"synthetic_B":1552},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":105,"start":49,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":105,"start":50,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":102,"start":23,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1088,"start":1006,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":571,"start":488,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":105,"start":50,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":56},{"feature_index":2,"overlap_bases":2}],"query_bed":[1174,1231],"query_length":57,"union_overlap_bases":57},"family":"overlapping_blocks","fingerprint":"a99bcfde8ecec223c133471cc0299dc30cb27320c3ec6893577d04ea00ffe375","group_id":"a99bcfde8ecec223c133471cc0299dc30cb27320c3ec6893577d04ea00ffe375","id":"INTERVALS-0008242","index":8242,"input":{"contigs":{"synthetic_A":1568,"synthetic_B":1683},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1177,"start":1172,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1231,"start":1175,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1234,"start":1229,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":205,"start":177,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":101,"start":76,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1231,"start":1174,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":61}],"query_bed":[994,1055],"query_length":61,"union_overlap_bases":61},"family":"coordinate_conversion","fingerprint":"ccbf9eaadf47f580b5b0d92593c7e75f29916d44d870d743a21f949fafa92e50","group_id":"ccbf9eaadf47f580b5b0d92593c7e75f29916d44d870d743a21f949fafa92e50","id":"INTERVALS-0008244","index":8244,"input":{"contigs":{"synthetic_A":1282,"synthetic_B":1282},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1055,"start":995,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":477,"start":438,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":98,"start":33,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1223,"start":1132,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":380,"start":310,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1055,"start":995,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[351,371],"query_length":20,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"2449702ac9ea610cc7eef1693caecbe4c51aa913b0f465be84799d2b02936e3b","group_id":"2449702ac9ea610cc7eef1693caecbe4c51aa913b0f465be84799d2b02936e3b","id":"INTERVALS-0008245","index":8245,"input":{"contigs":{"synthetic_A":1543,"synthetic_B":1474},"features":[{"basis":"one_closed","contig":"synthetic_A","end":351,"start":345,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":409,"start":372,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":344,"start":304,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1204,"start":1133,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":747,"start":675,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":255,"start":142,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":884,"start":870,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1027,"start":959,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":371,"start":351,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":26},{"feature_index":1,"overlap_bases":24}],"query_bed":[470,496],"query_length":26,"union_overlap_bases":26},"family":"nested","fingerprint":"34368676a546044a5109c0fdc83c80bdbf7e096f64f02f063394eb57c734a07f","group_id":"34368676a546044a5109c0fdc83c80bdbf7e096f64f02f063394eb57c734a07f","id":"INTERVALS-0008246","index":8246,"input":{"contigs":{"synthetic_A":994,"synthetic_B":1144},"features":[{"basis":"one_closed","contig":"synthetic_B","end":501,"start":466,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":495,"start":472,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":423,"start":327,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":294,"start":231,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":555,"start":514,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":172,"start":139,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":740,"start":733,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":776,"start":760,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":219,"start":146,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":422,"start":317,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":496,"start":471,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":5},{"feature_index":2,"overlap_bases":2}],"query_bed":[149,155],"query_length":6,"union_overlap_bases":6},"family":"overlapping_blocks","fingerprint":"bba2aaea4f000bff9ed8052e9a9a173ffc51a8aab519af4d547464076b8162cf","group_id":"bba2aaea4f000bff9ed8052e9a9a173ffc51a8aab519af4d547464076b8162cf","id":"INTERVALS-0008257","index":8257,"input":{"contigs":{"synthetic_A":1473,"synthetic_B":936},"features":[{"basis":"one_closed","contig":"synthetic_B","end":152,"start":147,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":155,"start":151,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":158,"start":153,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":794,"start":758,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":386,"start":297,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1262,"start":1172,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":684,"start":567,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":784,"start":767,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":155,"start":150,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[46,108],"query_length":62,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"857a31d6dd1fe8c8e93139c8e1413847e1dfbe7169bb7027dfdd7f14d0af3c7d","group_id":"857a31d6dd1fe8c8e93139c8e1413847e1dfbe7169bb7027dfdd7f14d0af3c7d","id":"INTERVALS-0008265","index":8265,"input":{"contigs":{"synthetic_A":617,"synthetic_B":1277},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":46,"start":28,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":120,"start":108,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":588,"start":561,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":413,"start":324,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":738,"start":625,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":118,"start":7,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":288,"start":228,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":693,"start":656,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":52,"start":39,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":108,"start":47,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":75},{"feature_index":5,"overlap_bases":8}],"query_bed":[631,706],"query_length":75,"union_overlap_bases":75},"family":"stranded","fingerprint":"d4014c2caaae9ae7d7dee5eda4fec4b266ce5b15793002243d97fd916fa3276c","group_id":"d4014c2caaae9ae7d7dee5eda4fec4b266ce5b15793002243d97fd916fa3276c","id":"INTERVALS-0008268","index":8268,"input":{"contigs":{"synthetic_A":1356,"synthetic_B":1727},"features":[{"basis":"one_closed","contig":"synthetic_A","end":706,"start":632,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":706,"start":631,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":159,"start":41,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":166,"start":120,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":193,"start":156,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":727,"start":699,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":123,"start":122,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":292,"start":197,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":405,"start":302,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":664,"start":594,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1067,"start":995,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":706,"start":631,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":54},{"feature_index":1,"overlap_bases":52},{"feature_index":2,"overlap_bases":54},{"feature_index":3,"overlap_bases":34}],"query_bed":[965,1019],"query_length":54,"union_overlap_bases":54},"family":"nested","fingerprint":"ba2c9536c4b9ba33891b18801426ec3fad0c42d8322268fd4cc97d4bd7db2fc6","group_id":"ba2c9536c4b9ba33891b18801426ec3fad0c42d8322268fd4cc97d4bd7db2fc6","id":"INTERVALS-0008281","index":8281,"input":{"contigs":{"synthetic_A":1226,"synthetic_B":1494},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1024,"start":961,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1018,"start":967,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1035,"start":928,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1021,"start":986,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":791,"start":761,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1019,"start":965,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":62},{"feature_index":2,"overlap_bases":2}],"query_bed":[219,282],"query_length":63,"union_overlap_bases":63},"family":"overlapping_blocks","fingerprint":"e84f224437ddcdb09e8b6e1bf8e8dbf9b5c61978893699cd5eace728dd5eb4a2","group_id":"e84f224437ddcdb09e8b6e1bf8e8dbf9b5c61978893699cd5eace728dd5eb4a2","id":"INTERVALS-0008292","index":8292,"input":{"contigs":{"synthetic_A":701,"synthetic_B":1071},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":222,"start":216,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":282,"start":221,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":285,"start":281,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":547,"start":510,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":111,"start":21,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":121,"start":12,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":635,"start":583,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":707,"start":693,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":282,"start":220,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":49}],"query_bed":[117,166],"query_length":49,"union_overlap_bases":49},"family":"coordinate_conversion","fingerprint":"490044488948ff21100d20a1e06489ff0bd93b91708569e6eded166647cb4fa9","group_id":"490044488948ff21100d20a1e06489ff0bd93b91708569e6eded166647cb4fa9","id":"INTERVALS-0008294","index":8294,"input":{"contigs":{"synthetic_A":1220,"synthetic_B":993},"features":[{"basis":"one_closed","contig":"synthetic_A","end":166,"start":118,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":996,"start":935,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":401,"start":358,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":937,"start":835,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":619,"start":541,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":322,"start":232,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1047,"start":963,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":172,"start":157,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":166,"start":118,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":57},{"feature_index":2,"overlap_bases":2}],"query_bed":[223,281],"query_length":58,"union_overlap_bases":58},"family":"overlapping_blocks","fingerprint":"ea5eb8885fd2a0dec7d1b8a3f4685cc23df1151b7260109e579ec530c1e7529a","group_id":"ea5eb8885fd2a0dec7d1b8a3f4685cc23df1151b7260109e579ec530c1e7529a","id":"INTERVALS-0008297","index":8297,"input":{"contigs":{"synthetic_A":612,"synthetic_B":1400},"features":[{"basis":"one_closed","contig":"synthetic_A","end":226,"start":221,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":281,"start":224,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":284,"start":279,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":379,"start":317,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":188,"start":187,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":206,"start":127,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":249,"start":176,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":542,"start":521,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":281,"start":223,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":8}],"query_bed":[215,223],"query_length":8,"union_overlap_bases":8},"family":"coordinate_conversion","fingerprint":"c5f48f180a972789c556f2d7ad1af76ab8609b8dfc6399026cefd575a00faf63","group_id":"c5f48f180a972789c556f2d7ad1af76ab8609b8dfc6399026cefd575a00faf63","id":"INTERVALS-0008299","index":8299,"input":{"contigs":{"synthetic_A":1077,"synthetic_B":1235},"features":[{"basis":"one_closed","contig":"synthetic_A","end":223,"start":216,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":510,"start":415,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":860,"start":825,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":329,"start":298,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":992,"start":942,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":748,"start":645,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":556,"start":496,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1064,"start":966,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":317,"start":246,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":113,"start":16,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":223,"start":216,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":38},{"feature_index":1,"overlap_bases":36}],"query_bed":[319,357],"query_length":38,"union_overlap_bases":38},"family":"nested","fingerprint":"cc2648ea5f3490309837bab73e72def240b22b5284587304f8a6fa4e6e6c75f4","group_id":"cc2648ea5f3490309837bab73e72def240b22b5284587304f8a6fa4e6e6c75f4","id":"INTERVALS-0008306","index":8306,"input":{"contigs":{"synthetic_A":1399,"synthetic_B":1048},"features":[{"basis":"one_closed","contig":"synthetic_B","end":362,"start":315,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":356,"start":321,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":111,"start":15,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":860,"start":844,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":156,"start":40,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":274,"start":188,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":513,"start":507,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":903,"start":845,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":238,"start":150,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":627,"start":529,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":357,"start":320,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":2,"overlap_bases":36},{"feature_index":9,"overlap_bases":52}],"query_bed":[1072,1130],"query_length":58,"union_overlap_bases":58},"family":"touching_boundary","fingerprint":"939b665e028d148e57788b75b260cf7cae78d90c601d2e7ea6c3c9788e70e754","group_id":"939b665e028d148e57788b75b260cf7cae78d90c601d2e7ea6c3c9788e70e754","id":"INTERVALS-0008310","index":8310,"input":{"contigs":{"synthetic_A":1046,"synthetic_B":1313},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1072,"start":1055,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1152,"start":1131,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1108,"start":1000,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":93,"start":78,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":462,"start":442,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":495,"start":487,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":60,"start":58,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":939,"start":873,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":516,"start":433,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1176,"start":1079,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":615,"start":547,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1130,"start":1072,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":77},{"feature_index":1,"overlap_bases":75}],"query_bed":[450,527],"query_length":77,"union_overlap_bases":77},"family":"nested","fingerprint":"8ce127ea2c30dbfee90b369fa1f52b20ba1c63d94844ed9292cb6ec80dbe3c95","group_id":"8ce127ea2c30dbfee90b369fa1f52b20ba1c63d94844ed9292cb6ec80dbe3c95","id":"INTERVALS-0008311","index":8311,"input":{"contigs":{"synthetic_A":823,"synthetic_B":1572},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":532,"start":445,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":526,"start":451,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":252,"start":189,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":453,"start":409,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":131,"start":29,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":587,"start":552,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":527,"start":451,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[290,367],"query_length":77,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"a31d8634efe348b4d81d4e5fb0c0c8a40c3fc0ca1a363f5badbd7b2851f397d8","group_id":"a31d8634efe348b4d81d4e5fb0c0c8a40c3fc0ca1a363f5badbd7b2851f397d8","id":"INTERVALS-0008330","index":8330,"input":{"contigs":{"synthetic_A":1388,"synthetic_B":1095},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":290,"start":270,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":375,"start":367,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":636,"start":633,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":762,"start":673,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":157,"start":155,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":46,"start":36,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":232,"start":174,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1162,"start":1066,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":367,"start":291,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":25}],"query_bed":[279,304],"query_length":25,"union_overlap_bases":25},"family":"stranded","fingerprint":"9034ec6a8f4a3b2b356ef66c4dad48b587da0513bcd9c1c09b735d224f294a4e","group_id":"9034ec6a8f4a3b2b356ef66c4dad48b587da0513bcd9c1c09b735d224f294a4e","id":"INTERVALS-0008343","index":8343,"input":{"contigs":{"synthetic_A":895,"synthetic_B":1367},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":304,"start":279,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":304,"start":279,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":597,"start":481,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":700,"start":652,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1325,"start":1240,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":674,"start":628,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":691,"start":642,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":108,"start":54,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":569,"start":546,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":509,"start":403,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":413,"start":327,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":251,"start":153,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":304,"start":280,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":55},{"feature_index":2,"overlap_bases":2}],"query_bed":[953,1009],"query_length":56,"union_overlap_bases":56},"family":"overlapping_blocks","fingerprint":"3ba84e1cdb3169097273a24ee3061540ed97be3a021001205cf53ac5b9e559a7","group_id":"3ba84e1cdb3169097273a24ee3061540ed97be3a021001205cf53ac5b9e559a7","id":"INTERVALS-0008357","index":8357,"input":{"contigs":{"synthetic_A":634,"synthetic_B":1663},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":956,"start":950,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1009,"start":955,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1012,"start":1007,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1533,"start":1520,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":844,"start":806,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":471,"start":414,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":558,"start":439,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1621,"start":1520,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1009,"start":954,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[328,376],"query_length":48,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"8027606e266e13e5e97381b9b6ec5dd3c22f98d64ec08a1bb789edb587ad0984","group_id":"8027606e266e13e5e97381b9b6ec5dd3c22f98d64ec08a1bb789edb587ad0984","id":"INTERVALS-0008370","index":8370,"input":{"contigs":{"synthetic_A":1023,"synthetic_B":642},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":328,"start":314,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":380,"start":377,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":795,"start":772,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":152,"start":118,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":103,"start":49,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":608,"start":500,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":40,"start":32,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":279,"start":241,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":119,"start":68,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":376,"start":329,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":26}],"query_bed":[859,885],"query_length":26,"union_overlap_bases":26},"family":"coordinate_conversion","fingerprint":"88dc03aef46f2700d06454d01d6a2cb0929e96f73fc5a183df6c7775bcc6ff19","group_id":"88dc03aef46f2700d06454d01d6a2cb0929e96f73fc5a183df6c7775bcc6ff19","id":"INTERVALS-0008374","index":8374,"input":{"contigs":{"synthetic_A":1102,"synthetic_B":1288},"features":[{"basis":"one_closed","contig":"synthetic_B","end":885,"start":860,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":91,"start":49,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":682,"start":603,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":148,"start":91,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":357,"start":346,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":869,"start":757,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":442,"start":346,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":238,"start":206,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1197,"start":1097,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":331,"start":319,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":550,"start":476,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":561,"start":461,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":885,"start":860,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73},{"feature_index":1,"overlap_bases":71}],"query_bed":[557,630],"query_length":73,"union_overlap_bases":73},"family":"nested","fingerprint":"2b1c4c60ffd5947af16b55d293ccddc674656488477fb7edea9eb63249792cf3","group_id":"2b1c4c60ffd5947af16b55d293ccddc674656488477fb7edea9eb63249792cf3","id":"INTERVALS-0008391","index":8391,"input":{"contigs":{"synthetic_A":1723,"synthetic_B":939},"features":[{"basis":"one_closed","contig":"synthetic_B","end":635,"start":553,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":629,"start":559,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":819,"start":794,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1203,"start":1172,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":453,"start":358,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":805,"start":777,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":906,"start":808,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":594,"start":565,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":630,"start":558,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":57}],"query_bed":[338,395],"query_length":57,"union_overlap_bases":57},"family":"stranded","fingerprint":"5a46751ae6e1d72674d74f441baa08bb4a0e7e62dbd514c3312a1e976ffb256d","group_id":"5a46751ae6e1d72674d74f441baa08bb4a0e7e62dbd514c3312a1e976ffb256d","id":"INTERVALS-0008393","index":8393,"input":{"contigs":{"synthetic_A":1024,"synthetic_B":669},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":395,"start":338,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":395,"start":338,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":395,"start":296,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":539,"start":423,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":481,"start":455,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":163,"start":133,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":62,"start":23,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":395,"start":339,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":38},{"feature_index":1,"overlap_bases":36}],"query_bed":[807,845],"query_length":38,"union_overlap_bases":38},"family":"nested","fingerprint":"696eadc8b3655c1798e7ef7db447c7af2d9a5d598c027ad00c2362df759ee1a3","group_id":"696eadc8b3655c1798e7ef7db447c7af2d9a5d598c027ad00c2362df759ee1a3","id":"INTERVALS-0008406","index":8406,"input":{"contigs":{"synthetic_A":1665,"synthetic_B":1270},"features":[{"basis":"one_closed","contig":"synthetic_A","end":850,"start":803,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":844,"start":809,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":440,"start":349,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":866,"start":773,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":999,"start":959,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":547,"start":466,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":225,"start":213,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":90,"start":1,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":889,"start":854,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":838,"start":831,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1001,"start":919,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":663,"start":574,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":845,"start":807,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":13}],"query_bed":[715,728],"query_length":13,"union_overlap_bases":13},"family":"stranded","fingerprint":"8ab6bba61ff3eb18dd9b07365fd1d97f7d4bb9472f403c339a00e9fc9f36127d","group_id":"8ab6bba61ff3eb18dd9b07365fd1d97f7d4bb9472f403c339a00e9fc9f36127d","id":"INTERVALS-0008413","index":8413,"input":{"contigs":{"synthetic_A":1327,"synthetic_B":1324},"features":[{"basis":"one_closed","contig":"synthetic_B","end":728,"start":716,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":728,"start":715,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":955,"start":887,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":641,"start":569,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":129,"start":106,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1085,"start":1039,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":917,"start":879,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":728,"start":716,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18}],"query_bed":[428,446],"query_length":18,"union_overlap_bases":18},"family":"stranded","fingerprint":"6475b0dca1cd01c0cfdf43b5bb1cfd59e6dcf6c836cd8146619e985d72dad643","group_id":"6475b0dca1cd01c0cfdf43b5bb1cfd59e6dcf6c836cd8146619e985d72dad643","id":"INTERVALS-0008418","index":8418,"input":{"contigs":{"synthetic_A":1625,"synthetic_B":784},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":446,"start":428,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":446,"start":428,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":382,"start":379,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1104,"start":1020,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":317,"start":286,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":528,"start":501,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1414,"start":1383,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":701,"start":641,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":114,"start":91,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":903,"start":791,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":446,"start":428,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":49},{"feature_index":2,"overlap_bases":2}],"query_bed":[823,873],"query_length":50,"union_overlap_bases":50},"family":"overlapping_blocks","fingerprint":"ffe1cf4ca1b74d84839719a3ed7c15d778135f33dcfe7ea074676c3f1a35266f","group_id":"ffe1cf4ca1b74d84839719a3ed7c15d778135f33dcfe7ea074676c3f1a35266f","id":"INTERVALS-0008442","index":8442,"input":{"contigs":{"synthetic_A":1223,"synthetic_B":1594},"features":[{"basis":"one_closed","contig":"synthetic_A","end":826,"start":821,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":873,"start":825,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":876,"start":871,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1286,"start":1233,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1352,"start":1262,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":509,"start":444,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":157,"start":74,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":628,"start":558,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":583,"start":503,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":763,"start":735,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":873,"start":824,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":2,"overlap_bases":25}],"query_bed":[1043,1074],"query_length":31,"union_overlap_bases":25},"family":"touching_boundary","fingerprint":"221483bc671dff37c345ef2603b2d891b6d6f63584bd4d5dcb8e19b3c37d16e5","group_id":"221483bc671dff37c345ef2603b2d891b6d6f63584bd4d5dcb8e19b3c37d16e5","id":"INTERVALS-0008445","index":8445,"input":{"contigs":{"synthetic_A":1225,"synthetic_B":1325},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1043,"start":1023,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1075,"start":1074,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1093,"start":1050,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":788,"start":756,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":987,"start":940,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1074,"start":1043,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32},{"feature_index":1,"overlap_bases":30}],"query_bed":[472,504],"query_length":32,"union_overlap_bases":32},"family":"nested","fingerprint":"8bcbe34af099f18eef64d54211bf16c55d46b48afcd06a905d1ee37d427ff477","group_id":"8bcbe34af099f18eef64d54211bf16c55d46b48afcd06a905d1ee37d427ff477","id":"INTERVALS-0008461","index":8461,"input":{"contigs":{"synthetic_A":934,"synthetic_B":1704},"features":[{"basis":"one_closed","contig":"synthetic_B","end":509,"start":468,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":503,"start":474,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1291,"start":1202,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":677,"start":591,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":332,"start":219,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":352,"start":250,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1432,"start":1329,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":574,"start":484,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":146,"start":143,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1226,"start":1152,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":589,"start":578,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":504,"start":472,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":66},{"feature_index":1,"overlap_bases":64}],"query_bed":[582,648],"query_length":66,"union_overlap_bases":66},"family":"nested","fingerprint":"aba6a3ee0c60bb575a59b913a6fb363a2352c907b3302bbe5d70950bfd1c5a14","group_id":"aba6a3ee0c60bb575a59b913a6fb363a2352c907b3302bbe5d70950bfd1c5a14","id":"INTERVALS-0008481","index":8481,"input":{"contigs":{"synthetic_A":1562,"synthetic_B":1680},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":653,"start":577,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":647,"start":583,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1473,"start":1367,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1244,"start":1205,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":829,"start":765,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1543,"start":1470,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":648,"start":583,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":27},{"feature_index":2,"overlap_bases":2}],"query_bed":[263,291],"query_length":28,"union_overlap_bases":28},"family":"overlapping_blocks","fingerprint":"ad882b1a2c26da1e99a4c791c3d0ae46500ce51bfbf59bafc947853248bc983e","group_id":"ad882b1a2c26da1e99a4c791c3d0ae46500ce51bfbf59bafc947853248bc983e","id":"INTERVALS-0008482","index":8482,"input":{"contigs":{"synthetic_A":896,"synthetic_B":605},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":266,"start":260,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":291,"start":265,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":294,"start":289,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":735,"start":640,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":317,"start":203,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":185,"start":114,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":234,"start":158,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":94,"start":63,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":188,"start":91,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":739,"start":654,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":334,"start":268,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":679,"start":648,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":291,"start":264,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":35}],"query_bed":[1172,1207],"query_length":35,"union_overlap_bases":35},"family":"stranded","fingerprint":"7f4ccae4c05e4639040743bad815b6896a408dde1145c13246945953b7418c2c","group_id":"7f4ccae4c05e4639040743bad815b6896a408dde1145c13246945953b7418c2c","id":"INTERVALS-0008503","index":8503,"input":{"contigs":{"synthetic_A":1493,"synthetic_B":1618},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1207,"start":1172,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1207,"start":1172,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1486,"start":1414,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":463,"start":390,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":843,"start":824,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1357,"start":1245,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1128,"start":1116,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":216,"start":123,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1237,"start":1193,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1207,"start":1173,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":44},{"feature_index":2,"overlap_bases":2}],"query_bed":[241,286],"query_length":45,"union_overlap_bases":45},"family":"overlapping_blocks","fingerprint":"0227c00afa51fb86e1c020ee891e88a6355e56094a2aa13b1c9a22f574c884b0","group_id":"0227c00afa51fb86e1c020ee891e88a6355e56094a2aa13b1c9a22f574c884b0","id":"INTERVALS-0008527","index":8527,"input":{"contigs":{"synthetic_A":1659,"synthetic_B":1545},"features":[{"basis":"one_closed","contig":"synthetic_A","end":244,"start":239,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":286,"start":243,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":289,"start":285,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":356,"start":328,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":853,"start":793,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":348,"start":230,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1461,"start":1380,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":195,"start":186,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":916,"start":830,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":286,"start":241,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":28}],"query_bed":[707,735],"query_length":28,"union_overlap_bases":28},"family":"coordinate_conversion","fingerprint":"fe14ca16b89b9794356a6db9a465969dd36bd5c2c1c2aec9dd3ac24459348038","group_id":"fe14ca16b89b9794356a6db9a465969dd36bd5c2c1c2aec9dd3ac24459348038","id":"INTERVALS-0008529","index":8529,"input":{"contigs":{"synthetic_A":914,"synthetic_B":1726},"features":[{"basis":"one_closed","contig":"synthetic_A","end":735,"start":708,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":322,"start":251,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":325,"start":291,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1066,"start":1005,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":706,"start":597,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":286,"start":178,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":846,"start":789,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":587,"start":511,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":273,"start":239,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":267,"start":207,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":327,"start":290,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1093,"start":1022,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":735,"start":708,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":57},{"feature_index":2,"overlap_bases":2}],"query_bed":[1372,1430],"query_length":58,"union_overlap_bases":58},"family":"overlapping_blocks","fingerprint":"b31f51a2a6e14dd59a7508e2dc34279c7e6107092715a6a6458742e134f5b1bf","group_id":"b31f51a2a6e14dd59a7508e2dc34279c7e6107092715a6a6458742e134f5b1bf","id":"INTERVALS-0008542","index":8542,"input":{"contigs":{"synthetic_A":1667,"synthetic_B":1231},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1375,"start":1369,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1430,"start":1373,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1433,"start":1429,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":958,"start":855,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":124,"start":121,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":892,"start":811,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":807,"start":726,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":168,"start":164,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":918,"start":803,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":304,"start":203,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1430,"start":1372,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":55}],"query_bed":[95,150],"query_length":55,"union_overlap_bases":55},"family":"coordinate_conversion","fingerprint":"62b2fab601d03aa8709dca9f85a81dcba05d916995cc4915e38316c5fe341b89","group_id":"62b2fab601d03aa8709dca9f85a81dcba05d916995cc4915e38316c5fe341b89","id":"INTERVALS-0008549","index":8549,"input":{"contigs":{"synthetic_A":932,"synthetic_B":1354},"features":[{"basis":"one_closed","contig":"synthetic_A","end":150,"start":96,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":654,"start":548,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":114,"start":96,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":223,"start":147,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":67,"start":21,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1222,"start":1198,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":288,"start":212,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":150,"start":96,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[424,499],"query_length":75,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"2d71b2666f8ef2e1c9b99f2ac5f4d49e666a7fd0c4323197080bb2382941a493","group_id":"2d71b2666f8ef2e1c9b99f2ac5f4d49e666a7fd0c4323197080bb2382941a493","id":"INTERVALS-0008555","index":8555,"input":{"contigs":{"synthetic_A":749,"synthetic_B":1400},"features":[{"basis":"one_closed","contig":"synthetic_A","end":424,"start":414,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":506,"start":500,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":71,"start":61,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1177,"start":1155,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":650,"start":544,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":702,"start":655,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":316,"start":313,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":544,"start":453,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":372,"start":308,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":295,"start":182,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":499,"start":424,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32},{"feature_index":1,"overlap_bases":30}],"query_bed":[389,421],"query_length":32,"union_overlap_bases":32},"family":"nested","fingerprint":"108294181b968c42429771de95b4c23a05a249b08d99f0b872422ed97f35bd52","group_id":"108294181b968c42429771de95b4c23a05a249b08d99f0b872422ed97f35bd52","id":"INTERVALS-0008556","index":8556,"input":{"contigs":{"synthetic_A":1529,"synthetic_B":1019},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":426,"start":384,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":420,"start":390,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":41,"start":3,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":875,"start":789,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":197,"start":137,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":874,"start":856,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":794,"start":735,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":730,"start":726,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":438,"start":433,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":321,"start":252,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":681,"start":620,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":505,"start":443,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":421,"start":390,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":66}],"query_bed":[1329,1395],"query_length":66,"union_overlap_bases":66},"family":"stranded","fingerprint":"8af3d4a003dde91f01ba977bcf0c20926924cedf40cc7abfb534ad83efbba9cf","group_id":"8af3d4a003dde91f01ba977bcf0c20926924cedf40cc7abfb534ad83efbba9cf","id":"INTERVALS-0008563","index":8563,"input":{"contigs":{"synthetic_A":1649,"synthetic_B":1162},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1395,"start":1330,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1395,"start":1329,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":323,"start":224,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":139,"start":25,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":130,"start":71,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":997,"start":994,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":339,"start":267,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":199,"start":117,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1395,"start":1329,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":21}],"query_bed":[963,984],"query_length":21,"union_overlap_bases":21},"family":"stranded","fingerprint":"50bd3006ccb378fe99bee6c3b40fe47cb0ff4e69a735abf8597a7379124f103e","group_id":"50bd3006ccb378fe99bee6c3b40fe47cb0ff4e69a735abf8597a7379124f103e","id":"INTERVALS-0008573","index":8573,"input":{"contigs":{"synthetic_A":1264,"synthetic_B":1644},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":984,"start":963,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":984,"start":964,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":449,"start":332,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":574,"start":495,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1190,"start":1180,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1025,"start":995,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":308,"start":262,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":494,"start":443,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1183,"start":1110,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1335,"start":1266,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":132,"start":44,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":984,"start":964,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":71},{"feature_index":2,"overlap_bases":2},{"feature_index":3,"overlap_bases":72}],"query_bed":[507,579],"query_length":72,"union_overlap_bases":72},"family":"overlapping_blocks","fingerprint":"1270f0d0d1c6808b6b266534453716ecf0da95ae4164f8f3fb863f04e9eecc82","group_id":"1270f0d0d1c6808b6b266534453716ecf0da95ae4164f8f3fb863f04e9eecc82","id":"INTERVALS-0008592","index":8592,"input":{"contigs":{"synthetic_A":1552,"synthetic_B":1362},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":510,"start":504,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":579,"start":509,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":582,"start":578,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":598,"start":508,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":786,"start":705,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":665,"start":638,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":246,"start":222,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":199,"start":155,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":737,"start":683,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1191,"start":1115,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":579,"start":508,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":38}],"query_bed":[995,1033],"query_length":38,"union_overlap_bases":38},"family":"stranded","fingerprint":"19abad68cbde5f2b482826941f8745147bc86cd05c35cadbea7dbc7ffe085b47","group_id":"19abad68cbde5f2b482826941f8745147bc86cd05c35cadbea7dbc7ffe085b47","id":"INTERVALS-0008603","index":8603,"input":{"contigs":{"synthetic_A":1461,"synthetic_B":1441},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1033,"start":996,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1033,"start":995,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1042,"start":959,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":807,"start":702,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1028,"start":1016,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":301,"start":188,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":473,"start":434,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":237,"start":202,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1093,"start":1085,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1033,"start":996,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":5}],"query_bed":[48,53],"query_length":5,"union_overlap_bases":5},"family":"coordinate_conversion","fingerprint":"17192fd02811e1b36d7511c4c7d45349379a309050763e277637fdff0658849f","group_id":"17192fd02811e1b36d7511c4c7d45349379a309050763e277637fdff0658849f","id":"INTERVALS-0008624","index":8624,"input":{"contigs":{"synthetic_A":790,"synthetic_B":1320},"features":[{"basis":"one_closed","contig":"synthetic_A","end":53,"start":49,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":539,"start":529,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":317,"start":278,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1196,"start":1113,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":476,"start":360,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":225,"start":205,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":53,"start":49,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[920,939],"query_length":19,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"d3e319aa03cd791264d73c47a9b08c45ca2407acfa67e8d9804a74e441599146","group_id":"d3e319aa03cd791264d73c47a9b08c45ca2407acfa67e8d9804a74e441599146","id":"INTERVALS-0008640","index":8640,"input":{"contigs":{"synthetic_A":912,"synthetic_B":1624},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":920,"start":913,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":960,"start":939,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":960,"start":957,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":850,"start":790,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":350,"start":315,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":817,"start":748,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":481,"start":429,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":796,"start":779,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":239,"start":235,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":744,"start":713,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1142,"start":1083,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":939,"start":921,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[39,65],"query_length":26,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"7e3f59bedb29ccc3d956abd48e7e465f4e4fa7c9e13a588b400702fb0ff87c96","group_id":"7e3f59bedb29ccc3d956abd48e7e465f4e4fa7c9e13a588b400702fb0ff87c96","id":"INTERVALS-0008660","index":8660,"input":{"contigs":{"synthetic_A":1704,"synthetic_B":1477},"features":[{"basis":"one_closed","contig":"synthetic_B","end":39,"start":31,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":83,"start":66,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1326,"start":1275,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":830,"start":730,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":300,"start":185,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":517,"start":406,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":445,"start":444,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1546,"start":1459,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":882,"start":865,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1028,"start":985,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":142,"start":133,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":65,"start":39,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":69},{"feature_index":2,"overlap_bases":2},{"feature_index":6,"overlap_bases":14}],"query_bed":[1458,1528],"query_length":70,"union_overlap_bases":70},"family":"overlapping_blocks","fingerprint":"02c106f2de9411aa54ac3fc509508351c651ea35a61cc9d3bbf9a173a8913769","group_id":"02c106f2de9411aa54ac3fc509508351c651ea35a61cc9d3bbf9a173a8913769","id":"INTERVALS-0008667","index":8667,"input":{"contigs":{"synthetic_A":1708,"synthetic_B":1227},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1461,"start":1455,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1528,"start":1459,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1531,"start":1527,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":166,"start":107,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1582,"start":1534,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":355,"start":351,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1472,"start":1419,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":482,"start":453,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":813,"start":791,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":444,"start":332,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":552,"start":519,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1528,"start":1459,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":48},{"feature_index":1,"overlap_bases":46}],"query_bed":[842,890],"query_length":48,"union_overlap_bases":48},"family":"nested","fingerprint":"8b4835362322f426c6d4f72d750b415e21074b299284247f4714e6945b4be211","group_id":"8b4835362322f426c6d4f72d750b415e21074b299284247f4714e6945b4be211","id":"INTERVALS-0008676","index":8676,"input":{"contigs":{"synthetic_A":1614,"synthetic_B":1614},"features":[{"basis":"one_closed","contig":"synthetic_B","end":895,"start":838,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":889,"start":843,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":445,"start":352,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":234,"start":196,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1485,"start":1476,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1346,"start":1278,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":975,"start":961,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1543,"start":1467,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":890,"start":842,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":74},{"feature_index":2,"overlap_bases":16},{"feature_index":4,"overlap_bases":32}],"query_bed":[344,418],"query_length":74,"union_overlap_bases":74},"family":"coordinate_conversion","fingerprint":"39526e7c0b309d583108d9005efdc44b74703634110dc056085a3c5ab5622fc5","group_id":"39526e7c0b309d583108d9005efdc44b74703634110dc056085a3c5ab5622fc5","id":"INTERVALS-0008694","index":8694,"input":{"contigs":{"synthetic_A":1073,"synthetic_B":651},"features":[{"basis":"one_closed","contig":"synthetic_B","end":418,"start":345,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":818,"start":795,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":401,"start":386,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":936,"start":878,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":441,"start":387,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":616,"start":505,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":619,"start":612,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":549,"start":444,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":418,"start":345,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":62},{"feature_index":1,"overlap_bases":60}],"query_bed":[230,292],"query_length":62,"union_overlap_bases":62},"family":"nested","fingerprint":"e2791596f9d6a68da78c93b0272d8657a1898cf1597978e0d031c68aef3c0f92","group_id":"e2791596f9d6a68da78c93b0272d8657a1898cf1597978e0d031c68aef3c0f92","id":"INTERVALS-0008706","index":8706,"input":{"contigs":{"synthetic_A":1268,"synthetic_B":851},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":297,"start":225,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":291,"start":232,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":592,"start":534,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":560,"start":530,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":195,"start":128,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":161,"start":73,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":501,"start":437,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":292,"start":230,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":45},{"feature_index":2,"overlap_bases":2}],"query_bed":[454,500],"query_length":46,"union_overlap_bases":46},"family":"overlapping_blocks","fingerprint":"9b99e4acc6a5a7fc805095321c7cb37ab3fcc4bf770d8a89fe5817e2a1df556b","group_id":"9b99e4acc6a5a7fc805095321c7cb37ab3fcc4bf770d8a89fe5817e2a1df556b","id":"INTERVALS-0008717","index":8717,"input":{"contigs":{"synthetic_A":1109,"synthetic_B":782},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":457,"start":451,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":500,"start":455,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":503,"start":499,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":159,"start":59,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":247,"start":140,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":179,"start":62,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":500,"start":454,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":5}],"query_bed":[328,333],"query_length":5,"union_overlap_bases":5},"family":"coordinate_conversion","fingerprint":"ab7bdab0edc5ef922ea0bd799e661a9e5d41c7c32dc4129a166055e52b8e9be5","group_id":"ab7bdab0edc5ef922ea0bd799e661a9e5d41c7c32dc4129a166055e52b8e9be5","id":"INTERVALS-0008719","index":8719,"input":{"contigs":{"synthetic_A":830,"synthetic_B":1229},"features":[{"basis":"one_closed","contig":"synthetic_A","end":333,"start":329,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":535,"start":470,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":381,"start":268,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":973,"start":952,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":602,"start":514,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":100,"start":11,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":315,"start":276,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":333,"start":329,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1089,1114],"query_length":25,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"14155d223adcd5305465690ec16307a21821c2f88ed36763ddc39ce71f1dd8fb","group_id":"14155d223adcd5305465690ec16307a21821c2f88ed36763ddc39ce71f1dd8fb","id":"INTERVALS-0008730","index":8730,"input":{"contigs":{"synthetic_A":1430,"synthetic_B":1431},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1089,"start":1073,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1136,"start":1114,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":884,"start":836,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1165,"start":1143,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1069,"start":967,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":310,"start":226,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":665,"start":622,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":158,"start":142,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":751,"start":659,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1114,"start":1090,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":65},{"feature_index":1,"overlap_bases":63}],"query_bed":[995,1060],"query_length":65,"union_overlap_bases":65},"family":"nested","fingerprint":"527b223601ec5f5d5bd93b05a58733fe20220a69056af0b9cf47dc09c79ea0bb","group_id":"527b223601ec5f5d5bd93b05a58733fe20220a69056af0b9cf47dc09c79ea0bb","id":"INTERVALS-0008741","index":8741,"input":{"contigs":{"synthetic_A":1008,"synthetic_B":1463},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1065,"start":990,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1059,"start":996,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":421,"start":378,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":936,"start":924,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":952,"start":916,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1215,"start":1112,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1268,"start":1208,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":867,"start":847,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":682,"start":624,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":142,"start":40,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1060,"start":996,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":64}],"query_bed":[226,290],"query_length":64,"union_overlap_bases":64},"family":"stranded","fingerprint":"a522728289b456df77db6a4086bf7fb932d1de0a0f94ca1a585f3d17bb10c233","group_id":"a522728289b456df77db6a4086bf7fb932d1de0a0f94ca1a585f3d17bb10c233","id":"INTERVALS-0008748","index":8748,"input":{"contigs":{"synthetic_A":1141,"synthetic_B":996},"features":[{"basis":"one_closed","contig":"synthetic_B","end":290,"start":227,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":290,"start":227,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":257,"start":237,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":863,"start":757,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1111,"start":1009,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":219,"start":160,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":604,"start":521,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":436,"start":418,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":878,"start":808,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":839,"start":784,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":105,"start":50,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":351,"start":337,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":290,"start":226,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":76},{"feature_index":2,"overlap_bases":2}],"query_bed":[1443,1520],"query_length":77,"union_overlap_bases":77},"family":"overlapping_blocks","fingerprint":"33b6ae24c9ed14768c8f3d17cacc5cf33753157952bc685dc32ab88824a9b227","group_id":"33b6ae24c9ed14768c8f3d17cacc5cf33753157952bc685dc32ab88824a9b227","id":"INTERVALS-0008767","index":8767,"input":{"contigs":{"synthetic_A":1714,"synthetic_B":1387},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1446,"start":1440,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1520,"start":1445,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1523,"start":1518,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1233,"start":1220,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1120,"start":1010,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1494,"start":1420,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":980,"start":943,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":433,"start":317,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1520,"start":1443,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[141,161],"query_length":20,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"94d4edec32bcc5316f938aad043fb3d57ac074843d00dfb54b2ed466a8a1a278","group_id":"94d4edec32bcc5316f938aad043fb3d57ac074843d00dfb54b2ed466a8a1a278","id":"INTERVALS-0008785","index":8785,"input":{"contigs":{"synthetic_A":1767,"synthetic_B":1659},"features":[{"basis":"one_closed","contig":"synthetic_B","end":141,"start":130,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":167,"start":161,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":963,"start":898,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":960,"start":896,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":311,"start":263,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":77,"start":38,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":585,"start":549,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1574,"start":1532,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1429,"start":1352,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":161,"start":141,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[280,302],"query_length":22,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"792d3068ae8757449af09b97804dacf2366d2a4020a91d610db0b47683a8c134","group_id":"792d3068ae8757449af09b97804dacf2366d2a4020a91d610db0b47683a8c134","id":"INTERVALS-0008790","index":8790,"input":{"contigs":{"synthetic_A":1749,"synthetic_B":678},"features":[{"basis":"one_closed","contig":"synthetic_B","end":280,"start":267,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":311,"start":302,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":243,"start":216,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":500,"start":464,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":103,"start":20,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":743,"start":701,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1058,"start":982,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":85,"start":67,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":210,"start":107,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1276,"start":1263,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":562,"start":465,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":302,"start":280,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[530,549],"query_length":19,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"fbb72aca9c3053a145b6d4895eb87f728cd2b8d844a21e2b3151693a82e00721","group_id":"fbb72aca9c3053a145b6d4895eb87f728cd2b8d844a21e2b3151693a82e00721","id":"INTERVALS-0008795","index":8795,"input":{"contigs":{"synthetic_A":1634,"synthetic_B":968},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":530,"start":521,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":578,"start":549,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":659,"start":656,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":517,"start":480,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1090,"start":1089,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":549,"start":530,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":14},{"feature_index":6,"overlap_bases":14}],"query_bed":[102,116],"query_length":14,"union_overlap_bases":14},"family":"stranded","fingerprint":"413f7314451a5d34bcd20bd1a8293ecfefb77abbb9bcae8f901da280fd5c9dea","group_id":"413f7314451a5d34bcd20bd1a8293ecfefb77abbb9bcae8f901da280fd5c9dea","id":"INTERVALS-0008823","index":8823,"input":{"contigs":{"synthetic_A":699,"synthetic_B":759},"features":[{"basis":"one_closed","contig":"synthetic_A","end":116,"start":103,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":116,"start":103,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":246,"start":186,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":132,"start":76,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":206,"start":187,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":642,"start":525,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":138,"start":102,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":616,"start":505,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":116,"start":103,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":13}],"query_bed":[825,838],"query_length":13,"union_overlap_bases":13},"family":"stranded","fingerprint":"4769047647af136c2f264400a44af6a15bf4faef81abb658a0b0346392d6b356","group_id":"4769047647af136c2f264400a44af6a15bf4faef81abb658a0b0346392d6b356","id":"INTERVALS-0008833","index":8833,"input":{"contigs":{"synthetic_A":1767,"synthetic_B":1038},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":838,"start":825,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":838,"start":826,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":963,"start":871,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1298,"start":1282,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":708,"start":598,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":511,"start":403,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":166,"start":97,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":68,"start":22,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":344,"start":339,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":838,"start":826,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":71},{"feature_index":2,"overlap_bases":2}],"query_bed":[379,451],"query_length":72,"union_overlap_bases":72},"family":"overlapping_blocks","fingerprint":"a2929600af42cbd947f020ae4ad5d9c5fdaf483701e8d2bb30aa4c5e4a98a380","group_id":"a2929600af42cbd947f020ae4ad5d9c5fdaf483701e8d2bb30aa4c5e4a98a380","id":"INTERVALS-0008857","index":8857,"input":{"contigs":{"synthetic_A":962,"synthetic_B":709},"features":[{"basis":"one_closed","contig":"synthetic_A","end":382,"start":377,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":451,"start":381,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":454,"start":450,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":545,"start":501,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":274,"start":166,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":451,"start":379,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[458,488],"query_length":30,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"16028f382fa995ce12044dbd32f2a8ff0e08982a637d486bafe7ff9f600583e8","group_id":"16028f382fa995ce12044dbd32f2a8ff0e08982a637d486bafe7ff9f600583e8","id":"INTERVALS-0008885","index":8885,"input":{"contigs":{"synthetic_A":1553,"synthetic_B":1490},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":458,"start":451,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":521,"start":489,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":887,"start":851,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1013,"start":932,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":187,"start":176,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1434,"start":1398,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1012,"start":1004,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":907,"start":901,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":855,"start":816,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1343,"start":1337,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1296,"start":1254,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":488,"start":458,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":12},{"feature_index":2,"overlap_bases":2}],"query_bed":[701,714],"query_length":13,"union_overlap_bases":13},"family":"overlapping_blocks","fingerprint":"5c2101fc52e454a433b2259257bdabeda262df84e74fbb674973f13333f9ebef","group_id":"5c2101fc52e454a433b2259257bdabeda262df84e74fbb674973f13333f9ebef","id":"INTERVALS-0008887","index":8887,"input":{"contigs":{"synthetic_A":972,"synthetic_B":1022},"features":[{"basis":"one_closed","contig":"synthetic_B","end":704,"start":699,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":714,"start":702,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":717,"start":712,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":899,"start":857,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":531,"start":518,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":938,"start":828,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":934,"start":894,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":714,"start":701,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":30},{"feature_index":1,"overlap_bases":28},{"feature_index":3,"overlap_bases":30}],"query_bed":[1100,1130],"query_length":30,"union_overlap_bases":30},"family":"nested","fingerprint":"2e4baf483d2266fa36f2e4614d2588712624fc4e10461a8ceae309cb42d51b86","group_id":"2e4baf483d2266fa36f2e4614d2588712624fc4e10461a8ceae309cb42d51b86","id":"INTERVALS-0008926","index":8926,"input":{"contigs":{"synthetic_A":1341,"synthetic_B":1568},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1135,"start":1095,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1129,"start":1102,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":202,"start":146,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1137,"start":1025,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1004,"start":974,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1181,"start":1071,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1285,"start":1210,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":165,"start":46,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1130,"start":1100,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":7}],"query_bed":[128,135],"query_length":7,"union_overlap_bases":7},"family":"stranded","fingerprint":"ef822aca9157c568860b16d6adf7a71f7159ba2d726fbe48ea144efee4f14f0e","group_id":"ef822aca9157c568860b16d6adf7a71f7159ba2d726fbe48ea144efee4f14f0e","id":"INTERVALS-0008928","index":8928,"input":{"contigs":{"synthetic_A":1132,"synthetic_B":1208},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":135,"start":128,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":135,"start":129,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":544,"start":522,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":616,"start":580,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":373,"start":255,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":28,"start":17,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1058,"start":996,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1031,"start":919,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":481,"start":422,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":414,"start":337,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":970,"start":879,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":651,"start":625,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":135,"start":129,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":30},{"feature_index":2,"overlap_bases":2}],"query_bed":[679,710],"query_length":31,"union_overlap_bases":31},"family":"overlapping_blocks","fingerprint":"f7c1d5c83ecc7a9d96a433a5a961e4134394b141de8e907c4db884c25b7fc523","group_id":"f7c1d5c83ecc7a9d96a433a5a961e4134394b141de8e907c4db884c25b7fc523","id":"INTERVALS-0008937","index":8937,"input":{"contigs":{"synthetic_A":1224,"synthetic_B":711},"features":[{"basis":"one_closed","contig":"synthetic_A","end":682,"start":677,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":710,"start":681,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":713,"start":708,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":280,"start":197,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1006,"start":961,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":710,"start":680,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":37}],"query_bed":[184,221],"query_length":37,"union_overlap_bases":37},"family":"stranded","fingerprint":"28cab8c0945553bbfbd76707c50c306136bb1616ed477229b65e5e5831987e63","group_id":"28cab8c0945553bbfbd76707c50c306136bb1616ed477229b65e5e5831987e63","id":"INTERVALS-0008943","index":8943,"input":{"contigs":{"synthetic_A":762,"synthetic_B":1425},"features":[{"basis":"one_closed","contig":"synthetic_A","end":221,"start":185,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":221,"start":185,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1068,"start":1009,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":110,"start":12,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1116,"start":1037,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":522,"start":439,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":156,"start":65,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":221,"start":184,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":59},{"feature_index":4,"overlap_bases":55}],"query_bed":[824,883],"query_length":59,"union_overlap_bases":59},"family":"stranded","fingerprint":"1bdfa51c9c23ad6f965d66dae853394433975f1d857a695228ef533a2e99eedb","group_id":"1bdfa51c9c23ad6f965d66dae853394433975f1d857a695228ef533a2e99eedb","id":"INTERVALS-0008968","index":8968,"input":{"contigs":{"synthetic_A":1797,"synthetic_B":1290},"features":[{"basis":"one_closed","contig":"synthetic_B","end":883,"start":825,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":883,"start":824,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":868,"start":827,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1415,"start":1367,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":879,"start":807,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":847,"start":829,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1232,"start":1227,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":584,"start":569,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":830,"start":809,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":883,"start":825,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":79}],"query_bed":[254,333],"query_length":79,"union_overlap_bases":79},"family":"coordinate_conversion","fingerprint":"fcae8590c7a67f8d0f9fd588d6bd1d79494341b141f757f48e97fbb9a6636ed7","group_id":"fcae8590c7a67f8d0f9fd588d6bd1d79494341b141f757f48e97fbb9a6636ed7","id":"INTERVALS-0008969","index":8969,"input":{"contigs":{"synthetic_A":1365,"synthetic_B":1651},"features":[{"basis":"one_closed","contig":"synthetic_A","end":333,"start":255,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":867,"start":819,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":892,"start":803,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":973,"start":932,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1609,"start":1497,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":248,"start":145,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":920,"start":848,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":131,"start":129,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":402,"start":286,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":509,"start":421,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":333,"start":255,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":38},{"feature_index":1,"overlap_bases":36}],"query_bed":[370,408],"query_length":38,"union_overlap_bases":38},"family":"nested","fingerprint":"dbe3424cdded4d5e680c08e36d75f424f16ab3bbe3de48a26ded3feb450998d9","group_id":"dbe3424cdded4d5e680c08e36d75f424f16ab3bbe3de48a26ded3feb450998d9","id":"INTERVALS-0008971","index":8971,"input":{"contigs":{"synthetic_A":837,"synthetic_B":1141},"features":[{"basis":"one_closed","contig":"synthetic_A","end":413,"start":366,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":407,"start":372,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":256,"start":156,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":633,"start":538,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":786,"start":739,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":612,"start":508,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":408,"start":371,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":29}],"query_bed":[59,88],"query_length":29,"union_overlap_bases":29},"family":"stranded","fingerprint":"f0ec35049611adad5dcd3dad947c58fafbbea0ddeee1a3f7f8dee557b4dfda47","group_id":"f0ec35049611adad5dcd3dad947c58fafbbea0ddeee1a3f7f8dee557b4dfda47","id":"INTERVALS-0008988","index":8988,"input":{"contigs":{"synthetic_A":1294,"synthetic_B":684},"features":[{"basis":"one_closed","contig":"synthetic_B","end":88,"start":60,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":88,"start":60,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1171,"start":1068,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1146,"start":1117,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":336,"start":309,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":287,"start":233,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":494,"start":449,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":967,"start":899,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":441,"start":399,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":292,"start":175,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":174,"start":98,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":88,"start":59,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":34},{"feature_index":2,"overlap_bases":2}],"query_bed":[22,57],"query_length":35,"union_overlap_bases":35},"family":"overlapping_blocks","fingerprint":"8985f24c62148f7cc78ecc7b5d803a146e1b3705d907e7b909d0e1661b66c3ac","group_id":"8985f24c62148f7cc78ecc7b5d803a146e1b3705d907e7b909d0e1661b66c3ac","id":"INTERVALS-0008997","index":8997,"input":{"contigs":{"synthetic_A":1211,"synthetic_B":1430},"features":[{"basis":"one_closed","contig":"synthetic_B","end":25,"start":20,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":57,"start":23,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":60,"start":56,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":962,"start":859,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":616,"start":602,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":186,"start":150,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":501,"start":434,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":416,"start":386,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":400,"start":356,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":126,"start":100,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":859,"start":852,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1019,"start":911,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":57,"start":23,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[594,641],"query_length":47,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"2a4a58045c3748fc755c827866f5eaa71f478cd59d2a19bdbaea6e9d6a1ffe8a","group_id":"2a4a58045c3748fc755c827866f5eaa71f478cd59d2a19bdbaea6e9d6a1ffe8a","id":"INTERVALS-0009000","index":9000,"input":{"contigs":{"synthetic_A":897,"synthetic_B":846},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":594,"start":582,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":673,"start":642,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":275,"start":165,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":364,"start":267,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":478,"start":404,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":766,"start":710,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":698,"start":639,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":260,"start":189,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":372,"start":327,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":641,"start":594,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":16},{"feature_index":2,"overlap_bases":2}],"query_bed":[629,646],"query_length":17,"union_overlap_bases":17},"family":"overlapping_blocks","fingerprint":"cf735dc6605bc37a181dc84dc26e589726b2588acb11f69c872993c0ee683157","group_id":"cf735dc6605bc37a181dc84dc26e589726b2588acb11f69c872993c0ee683157","id":"INTERVALS-0009007","index":9007,"input":{"contigs":{"synthetic_A":896,"synthetic_B":1182},"features":[{"basis":"one_closed","contig":"synthetic_A","end":632,"start":627,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":646,"start":631,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":649,"start":645,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":351,"start":239,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":830,"start":750,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":533,"start":507,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":139,"start":35,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":417,"start":308,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":646,"start":630,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":49}],"query_bed":[174,223],"query_length":49,"union_overlap_bases":49},"family":"stranded","fingerprint":"ae169512cc206c9964584b640755cc7b5e74335f4f54dbb682e8f3153c532432","group_id":"ae169512cc206c9964584b640755cc7b5e74335f4f54dbb682e8f3153c532432","id":"INTERVALS-0009028","index":9028,"input":{"contigs":{"synthetic_A":892,"synthetic_B":1785},"features":[{"basis":"one_closed","contig":"synthetic_A","end":223,"start":175,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":223,"start":174,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":596,"start":512,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1628,"start":1574,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1336,"start":1306,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1548,"start":1510,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1541,"start":1461,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":657,"start":567,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":223,"start":175,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":15},{"feature_index":1,"overlap_bases":13}],"query_bed":[208,223],"query_length":15,"union_overlap_bases":15},"family":"nested","fingerprint":"5cefe7ce791bf1a2e0a6b0392fd285ec25cf29993fccdcdb201025a6574a91e9","group_id":"5cefe7ce791bf1a2e0a6b0392fd285ec25cf29993fccdcdb201025a6574a91e9","id":"INTERVALS-0009036","index":9036,"input":{"contigs":{"synthetic_A":776,"synthetic_B":684},"features":[{"basis":"one_closed","contig":"synthetic_B","end":228,"start":204,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":222,"start":210,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":354,"start":298,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":550,"start":509,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":713,"start":618,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":223,"start":208,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[313,383],"query_length":70,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e441d2a07894e6cd028610d454b1678795212bb2d5b34bc9caa1b7a580b9c1e0","group_id":"e441d2a07894e6cd028610d454b1678795212bb2d5b34bc9caa1b7a580b9c1e0","id":"INTERVALS-0009050","index":9050,"input":{"contigs":{"synthetic_A":1012,"synthetic_B":1224},"features":[{"basis":"one_closed","contig":"synthetic_B","end":313,"start":297,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":385,"start":383,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":546,"start":443,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":471,"start":363,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":568,"start":532,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":297,"start":296,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":757,"start":697,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":959,"start":894,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":934,"start":891,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":826,"start":716,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":276,"start":232,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":383,"start":313,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":14},{"feature_index":1,"overlap_bases":12}],"query_bed":[538,552],"query_length":14,"union_overlap_bases":14},"family":"nested","fingerprint":"bd1c0916f4b75b74a37ef92084a7be21ea2afcc629ea0edaf81be1a600cf3451","group_id":"bd1c0916f4b75b74a37ef92084a7be21ea2afcc629ea0edaf81be1a600cf3451","id":"INTERVALS-0009066","index":9066,"input":{"contigs":{"synthetic_A":1325,"synthetic_B":1654},"features":[{"basis":"one_closed","contig":"synthetic_A","end":557,"start":534,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":551,"start":539,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":845,"start":774,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1122,"start":1035,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":583,"start":523,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1218,"start":1186,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1369,"start":1273,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":950,"start":863,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":552,"start":538,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":66},{"feature_index":2,"overlap_bases":2}],"query_bed":[394,461],"query_length":67,"union_overlap_bases":67},"family":"overlapping_blocks","fingerprint":"dcbab4acaa8ac7f3e5b437e2fed5f8bed45c656a51fbcd64557cd781c916ab9c","group_id":"dcbab4acaa8ac7f3e5b437e2fed5f8bed45c656a51fbcd64557cd781c916ab9c","id":"INTERVALS-0009092","index":9092,"input":{"contigs":{"synthetic_A":672,"synthetic_B":786},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":397,"start":391,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":461,"start":396,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":464,"start":460,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":56,"start":12,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":181,"start":116,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":58,"start":45,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":461,"start":394,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":62}],"query_bed":[431,493],"query_length":62,"union_overlap_bases":62},"family":"coordinate_conversion","fingerprint":"ce50c7a8027d4d2c651b2beb0a023d2d82cdaa1474d52a35ee5ff0961648be5d","group_id":"ce50c7a8027d4d2c651b2beb0a023d2d82cdaa1474d52a35ee5ff0961648be5d","id":"INTERVALS-0009094","index":9094,"input":{"contigs":{"synthetic_A":915,"synthetic_B":1458},"features":[{"basis":"one_closed","contig":"synthetic_B","end":493,"start":432,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":196,"start":124,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":365,"start":265,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":608,"start":566,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":153,"start":92,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":262,"start":152,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":110,"start":2,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":506,"start":398,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1310,"start":1259,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":326,"start":266,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":569,"start":569,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":493,"start":432,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":57}],"query_bed":[365,422],"query_length":57,"union_overlap_bases":57},"family":"coordinate_conversion","fingerprint":"7cf4ab2cc6bea6196caf743132950a3274b270cec7f34cdc38b3300ece2f80fe","group_id":"7cf4ab2cc6bea6196caf743132950a3274b270cec7f34cdc38b3300ece2f80fe","id":"INTERVALS-0009109","index":9109,"input":{"contigs":{"synthetic_A":684,"synthetic_B":982},"features":[{"basis":"one_closed","contig":"synthetic_B","end":422,"start":366,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":74,"start":46,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":373,"start":277,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":530,"start":491,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":298,"start":210,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":637,"start":548,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":553,"start":516,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":569,"start":473,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":422,"start":366,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[837,879],"query_length":42,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"5c54b1a0e6e576872d585beb2375a25bdea70baf91f7a84e38a644e1085f1e02","group_id":"5c54b1a0e6e576872d585beb2375a25bdea70baf91f7a84e38a644e1085f1e02","id":"INTERVALS-0009110","index":9110,"input":{"contigs":{"synthetic_A":1665,"synthetic_B":1232},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":837,"start":818,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":902,"start":879,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1485,"start":1378,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":446,"start":441,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":138,"start":129,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":813,"start":776,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":969,"start":969,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":339,"start":239,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1075,"start":1057,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":497,"start":404,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":879,"start":837,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":74},{"feature_index":2,"overlap_bases":2}],"query_bed":[73,148],"query_length":75,"union_overlap_bases":75},"family":"overlapping_blocks","fingerprint":"af3b316446bc092620d64a18cc57dceeb49ee3454dc2dac41b14c35b4497e234","group_id":"af3b316446bc092620d64a18cc57dceeb49ee3454dc2dac41b14c35b4497e234","id":"INTERVALS-0009137","index":9137,"input":{"contigs":{"synthetic_A":1151,"synthetic_B":1436},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":76,"start":70,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":148,"start":74,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":151,"start":146,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1013,"start":965,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1319,"start":1244,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":478,"start":469,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":366,"start":257,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1175,"start":1081,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1269,"start":1236,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":148,"start":74,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":29}],"query_bed":[688,717],"query_length":29,"union_overlap_bases":29},"family":"coordinate_conversion","fingerprint":"0e723156838420e2c8b2490dce89940ace34c88ce673c3c90252813587d5f986","group_id":"0e723156838420e2c8b2490dce89940ace34c88ce673c3c90252813587d5f986","id":"INTERVALS-0009139","index":9139,"input":{"contigs":{"synthetic_A":921,"synthetic_B":1420},"features":[{"basis":"one_closed","contig":"synthetic_A","end":717,"start":689,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":994,"start":927,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":494,"start":481,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1008,"start":891,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":412,"start":358,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":921,"start":836,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":827,"start":738,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":86,"start":59,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1067,"start":966,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":717,"start":689,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":5,"overlap_bases":57}],"query_bed":[246,303],"query_length":57,"union_overlap_bases":57},"family":"touching_boundary","fingerprint":"c3210564f26419c6a4e2365cc517b60704b1b822ede0cbe3ec0ab011542027b7","group_id":"c3210564f26419c6a4e2365cc517b60704b1b822ede0cbe3ec0ab011542027b7","id":"INTERVALS-0009145","index":9145,"input":{"contigs":{"synthetic_A":881,"synthetic_B":697},"features":[{"basis":"one_closed","contig":"synthetic_A","end":246,"start":236,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":327,"start":303,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":796,"start":725,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":150,"start":82,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":721,"start":605,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":315,"start":204,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":684,"start":577,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":614,"start":495,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":560,"start":500,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":474,"start":466,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":263,"start":243,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":303,"start":247,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1079,1157],"query_length":78,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"1b14ad9e0dea8bb54c480ecb89e098e93d22048ac5048036a88c2e6878ac8b47","group_id":"1b14ad9e0dea8bb54c480ecb89e098e93d22048ac5048036a88c2e6878ac8b47","id":"INTERVALS-0009155","index":9155,"input":{"contigs":{"synthetic_A":1750,"synthetic_B":1551},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1079,"start":1066,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1190,"start":1158,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1051,"start":970,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1398,"start":1290,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1177,"start":1145,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":127,"start":20,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":692,"start":667,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":182,"start":122,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1624,"start":1557,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":331,"start":290,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":450,"start":338,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":494,"start":415,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1157,"start":1079,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":67},{"feature_index":1,"overlap_bases":65}],"query_bed":[112,179],"query_length":67,"union_overlap_bases":67},"family":"nested","fingerprint":"14581ce8968d13abcdd80e45e5254e7458d86466211d9b219688291ac4646680","group_id":"14581ce8968d13abcdd80e45e5254e7458d86466211d9b219688291ac4646680","id":"INTERVALS-0009171","index":9171,"input":{"contigs":{"synthetic_A":1074,"synthetic_B":1022},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":184,"start":107,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":178,"start":113,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":393,"start":343,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":380,"start":356,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":886,"start":797,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":179,"start":112,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":79},{"feature_index":6,"overlap_bases":20}],"query_bed":[859,938],"query_length":79,"union_overlap_bases":79},"family":"stranded","fingerprint":"e3c05e46f38a051d0580642ced42ad96bbc13810ac7c14c3ce784a44b1096376","group_id":"e3c05e46f38a051d0580642ced42ad96bbc13810ac7c14c3ce784a44b1096376","id":"INTERVALS-0009173","index":9173,"input":{"contigs":{"synthetic_A":1304,"synthetic_B":1488},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":938,"start":859,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":938,"start":859,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":713,"start":712,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":577,"start":461,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":903,"start":792,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":210,"start":192,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1033,"start":919,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":310,"start":238,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":938,"start":860,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":57},{"feature_index":2,"overlap_bases":23}],"query_bed":[304,361],"query_length":57,"union_overlap_bases":57},"family":"coordinate_conversion","fingerprint":"f15d464a6516c8d069b4032aef4f9f15a1c9996f9e0e5bf77e4641e5bd73da15","group_id":"f15d464a6516c8d069b4032aef4f9f15a1c9996f9e0e5bf77e4641e5bd73da15","id":"INTERVALS-0009174","index":9174,"input":{"contigs":{"synthetic_A":1153,"synthetic_B":1272},"features":[{"basis":"one_closed","contig":"synthetic_B","end":361,"start":305,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":783,"start":773,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":327,"start":292,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":542,"start":523,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":189,"start":187,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1058,"start":989,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":174,"start":132,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":31,"start":12,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":361,"start":305,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":44}],"query_bed":[198,242],"query_length":44,"union_overlap_bases":44},"family":"stranded","fingerprint":"56a06f92d390a87b337687ead52b3b5a08e5a6cd2a2f7dbe22de9d569a06e043","group_id":"56a06f92d390a87b337687ead52b3b5a08e5a6cd2a2f7dbe22de9d569a06e043","id":"INTERVALS-0009183","index":9183,"input":{"contigs":{"synthetic_A":752,"synthetic_B":1127},"features":[{"basis":"one_closed","contig":"synthetic_B","end":242,"start":199,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":242,"start":199,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":148,"start":90,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":246,"start":220,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":557,"start":457,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":242,"start":198,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[112,122],"query_length":10,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"1d7ff00c83a1b496f5836ebc3043af97460ff306763437d6039b59ada7fcc4e9","group_id":"1d7ff00c83a1b496f5836ebc3043af97460ff306763437d6039b59ada7fcc4e9","id":"INTERVALS-0009190","index":9190,"input":{"contigs":{"synthetic_A":989,"synthetic_B":1031},"features":[{"basis":"one_closed","contig":"synthetic_B","end":112,"start":107,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":161,"start":122,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":723,"start":687,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":491,"start":429,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":283,"start":274,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":675,"start":627,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":471,"start":383,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":417,"start":358,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":122,"start":112,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[494,526],"query_length":32,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"5a3501400066dcc636efe5a21962c5d63581cc108148f0c3cd1789b58eb4900c","group_id":"5a3501400066dcc636efe5a21962c5d63581cc108148f0c3cd1789b58eb4900c","id":"INTERVALS-0009205","index":9205,"input":{"contigs":{"synthetic_A":673,"synthetic_B":1100},"features":[{"basis":"one_closed","contig":"synthetic_B","end":494,"start":491,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":537,"start":527,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":370,"start":281,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":265,"start":220,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":470,"start":380,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":688,"start":648,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":526,"start":495,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":4},{"feature_index":2,"overlap_bases":2}],"query_bed":[1064,1069],"query_length":5,"union_overlap_bases":5},"family":"overlapping_blocks","fingerprint":"73c6da8e7efcd0b5f9b7b1c84351e2e17981159fe1118d5f8d207c39fbf07f0e","group_id":"73c6da8e7efcd0b5f9b7b1c84351e2e17981159fe1118d5f8d207c39fbf07f0e","id":"INTERVALS-0009212","index":9212,"input":{"contigs":{"synthetic_A":904,"synthetic_B":1581},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1067,"start":1062,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1069,"start":1066,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1072,"start":1067,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":659,"start":634,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":452,"start":385,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":435,"start":382,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":442,"start":332,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":177,"start":130,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":347,"start":290,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1069,"start":1064,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46}],"query_bed":[83,129],"query_length":46,"union_overlap_bases":46},"family":"coordinate_conversion","fingerprint":"9d34bac6605f3d71521e4195e009450350d6d13bf4e353372d0d00dc31649a47","group_id":"9d34bac6605f3d71521e4195e009450350d6d13bf4e353372d0d00dc31649a47","id":"INTERVALS-0009224","index":9224,"input":{"contigs":{"synthetic_A":648,"synthetic_B":703},"features":[{"basis":"one_closed","contig":"synthetic_A","end":129,"start":84,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":524,"start":478,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":159,"start":138,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":387,"start":370,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":298,"start":268,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":523,"start":468,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":468,"start":433,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":129,"start":84,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":33},{"feature_index":1,"overlap_bases":31},{"feature_index":2,"overlap_bases":13}],"query_bed":[380,413],"query_length":33,"union_overlap_bases":33},"family":"nested","fingerprint":"c3027cb6803c2446853f0b6a40ab8cf2939438e817c9cbd360e5706699dde7f3","group_id":"c3027cb6803c2446853f0b6a40ab8cf2939438e817c9cbd360e5706699dde7f3","id":"INTERVALS-0009226","index":9226,"input":{"contigs":{"synthetic_A":1305,"synthetic_B":1222},"features":[{"basis":"one_closed","contig":"synthetic_A","end":418,"start":376,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":412,"start":382,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":434,"start":400,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":886,"start":880,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":936,"start":830,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":954,"start":841,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1132,"start":1093,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":577,"start":570,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":666,"start":610,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":912,"start":899,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":167,"start":119,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":413,"start":381,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":31}],"query_bed":[409,440],"query_length":31,"union_overlap_bases":31},"family":"stranded","fingerprint":"86c2438a9c672d607f978a8930380a987bc3390549da1146fd104cf4781682b1","group_id":"86c2438a9c672d607f978a8930380a987bc3390549da1146fd104cf4781682b1","id":"INTERVALS-0009233","index":9233,"input":{"contigs":{"synthetic_A":1047,"synthetic_B":1519},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":440,"start":409,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":440,"start":409,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":509,"start":412,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":627,"start":549,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":653,"start":613,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":389,"start":382,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1097,"start":1051,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1234,"start":1176,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":597,"start":506,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":357,"start":328,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":440,"start":409,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":68},{"feature_index":1,"overlap_bases":66}],"query_bed":[462,530],"query_length":68,"union_overlap_bases":68},"family":"nested","fingerprint":"228390d69b69683f7a8654eebdf9932103fcbacb8740a64be02c9acc751f0610","group_id":"228390d69b69683f7a8654eebdf9932103fcbacb8740a64be02c9acc751f0610","id":"INTERVALS-0009241","index":9241,"input":{"contigs":{"synthetic_A":819,"synthetic_B":1184},"features":[{"basis":"one_closed","contig":"synthetic_B","end":535,"start":458,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":529,"start":463,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":124,"start":18,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":367,"start":248,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":698,"start":605,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":223,"start":167,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":235,"start":201,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1049,"start":1040,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":443,"start":421,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":530,"start":462,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":46},{"feature_index":2,"overlap_bases":2}],"query_bed":[418,465],"query_length":47,"union_overlap_bases":47},"family":"overlapping_blocks","fingerprint":"0599ea7e7bb7e059e01d838474a741c21c81f0f6e9e63e3596e8c3bd4a0e7c00","group_id":"0599ea7e7bb7e059e01d838474a741c21c81f0f6e9e63e3596e8c3bd4a0e7c00","id":"INTERVALS-0009242","index":9242,"input":{"contigs":{"synthetic_A":929,"synthetic_B":879},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":421,"start":415,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":465,"start":419,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":468,"start":463,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":695,"start":601,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":317,"start":275,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":270,"start":176,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":702,"start":588,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":454,"start":379,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":465,"start":419,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":27}],"query_bed":[484,511],"query_length":27,"union_overlap_bases":27},"family":"coordinate_conversion","fingerprint":"c5376e9cfc8ccd99cc41e275c4d1027af1a4ee813ff87ebf798ba49d9c19c890","group_id":"c5376e9cfc8ccd99cc41e275c4d1027af1a4ee813ff87ebf798ba49d9c19c890","id":"INTERVALS-0009244","index":9244,"input":{"contigs":{"synthetic_A":1027,"synthetic_B":1734},"features":[{"basis":"one_closed","contig":"synthetic_A","end":511,"start":485,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1523,"start":1415,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":267,"start":244,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":139,"start":78,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1138,"start":1065,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1233,"start":1222,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1483,"start":1387,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":889,"start":773,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1468,"start":1433,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1224,"start":1169,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":511,"start":485,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56},{"feature_index":1,"overlap_bases":54}],"query_bed":[245,301],"query_length":56,"union_overlap_bases":56},"family":"nested","fingerprint":"81852fd6290d6be6100f98ac09fe856f7ec1523804928aa7ba48434055f72efa","group_id":"81852fd6290d6be6100f98ac09fe856f7ec1523804928aa7ba48434055f72efa","id":"INTERVALS-0009251","index":9251,"input":{"contigs":{"synthetic_A":1566,"synthetic_B":1109},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":306,"start":240,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":300,"start":246,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1126,"start":1104,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":737,"start":716,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1298,"start":1283,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":860,"start":803,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":448,"start":402,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":301,"start":246,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":64},{"feature_index":2,"overlap_bases":2}],"query_bed":[62,127],"query_length":65,"union_overlap_bases":65},"family":"overlapping_blocks","fingerprint":"215450246f1fa3b0ba198eced81be4dd33ae17fe82cfbe3ba41b8a03a2022db6","group_id":"215450246f1fa3b0ba198eced81be4dd33ae17fe82cfbe3ba41b8a03a2022db6","id":"INTERVALS-0009252","index":9252,"input":{"contigs":{"synthetic_A":1291,"synthetic_B":1411},"features":[{"basis":"one_closed","contig":"synthetic_A","end":65,"start":60,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":127,"start":63,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":130,"start":126,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1141,"start":1090,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":804,"start":750,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":499,"start":494,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":553,"start":541,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":127,"start":62,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":55},{"feature_index":1,"overlap_bases":53},{"feature_index":7,"overlap_bases":18}],"query_bed":[102,157],"query_length":55,"union_overlap_bases":55},"family":"nested","fingerprint":"e1962164e6fa49f6ece40e4c4bf770ea699378b6621937d3c56782b61dc19e99","group_id":"e1962164e6fa49f6ece40e4c4bf770ea699378b6621937d3c56782b61dc19e99","id":"INTERVALS-0009256","index":9256,"input":{"contigs":{"synthetic_A":1230,"synthetic_B":1480},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":162,"start":97,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":156,"start":104,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":886,"start":825,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":616,"start":609,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1288,"start":1200,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1220,"start":1187,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":493,"start":406,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":132,"start":115,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":558,"start":525,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":406,"start":288,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":266,"start":160,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":646,"start":560,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":157,"start":102,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":6,"overlap_bases":32}],"query_bed":[460,529],"query_length":69,"union_overlap_bases":32},"family":"touching_boundary","fingerprint":"27f360a0116cfffb9cfa14a08690dfae42fa5eb9c72473371dc2fb1382d43171","group_id":"27f360a0116cfffb9cfa14a08690dfae42fa5eb9c72473371dc2fb1382d43171","id":"INTERVALS-0009260","index":9260,"input":{"contigs":{"synthetic_A":752,"synthetic_B":1707},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":460,"start":450,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":549,"start":529,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":254,"start":241,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":62,"start":8,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":502,"start":403,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":997,"start":985,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":519,"start":487,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":431,"start":394,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":529,"start":460,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":55},{"feature_index":2,"overlap_bases":2}],"query_bed":[1012,1068],"query_length":56,"union_overlap_bases":56},"family":"overlapping_blocks","fingerprint":"feb43966a08f7e9d228f94206bb4f38b992516021a8a38e51b8f1aa646e23c9f","group_id":"feb43966a08f7e9d228f94206bb4f38b992516021a8a38e51b8f1aa646e23c9f","id":"INTERVALS-0009262","index":9262,"input":{"contigs":{"synthetic_A":1375,"synthetic_B":1243},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1015,"start":1009,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1068,"start":1014,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1071,"start":1066,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":946,"start":904,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":229,"start":158,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":721,"start":604,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":869,"start":838,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":660,"start":622,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1311,"start":1217,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":330,"start":305,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":278,"start":159,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1068,"start":1013,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":45},{"feature_index":1,"overlap_bases":43}],"query_bed":[719,764],"query_length":45,"union_overlap_bases":45},"family":"nested","fingerprint":"99ef0466c3827de2eacea88250c0c1ad68daaaa20a9908ddf6bf3d3e12f67e97","group_id":"99ef0466c3827de2eacea88250c0c1ad68daaaa20a9908ddf6bf3d3e12f67e97","id":"INTERVALS-0009286","index":9286,"input":{"contigs":{"synthetic_A":1635,"synthetic_B":1465},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":769,"start":714,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":763,"start":720,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1248,"start":1129,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":155,"start":115,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":162,"start":141,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1046,"start":1042,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":764,"start":720,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":54}],"query_bed":[71,125],"query_length":54,"union_overlap_bases":54},"family":"coordinate_conversion","fingerprint":"fe26806cfc0f781b2977de41099f4826c52fcd96f24e0acf486712c44b825119","group_id":"fe26806cfc0f781b2977de41099f4826c52fcd96f24e0acf486712c44b825119","id":"INTERVALS-0009289","index":9289,"input":{"contigs":{"synthetic_A":1652,"synthetic_B":1526},"features":[{"basis":"one_closed","contig":"synthetic_B","end":125,"start":72,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1390,"start":1383,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":958,"start":919,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1243,"start":1133,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1353,"start":1236,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":408,"start":316,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":125,"start":72,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":36},{"feature_index":2,"overlap_bases":2}],"query_bed":[1006,1043],"query_length":37,"union_overlap_bases":37},"family":"overlapping_blocks","fingerprint":"fc39a1dafe06819b267e573e38fae9faac5eeabeffd4f8cea8b52ec18cd45721","group_id":"fc39a1dafe06819b267e573e38fae9faac5eeabeffd4f8cea8b52ec18cd45721","id":"INTERVALS-0009292","index":9292,"input":{"contigs":{"synthetic_A":1682,"synthetic_B":1212},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1009,"start":1004,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1043,"start":1008,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1046,"start":1042,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":908,"start":820,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":532,"start":455,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1043,"start":961,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1043,"start":1006,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1047,1085],"query_length":38,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"65711954cb5ae50243fd5e0c8cebdaee3539c9498f5d2c75df0caa622e3ac407","group_id":"65711954cb5ae50243fd5e0c8cebdaee3539c9498f5d2c75df0caa622e3ac407","id":"INTERVALS-0009305","index":9305,"input":{"contigs":{"synthetic_A":1205,"synthetic_B":1394},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1047,"start":1046,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1090,"start":1085,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":722,"start":625,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":263,"start":155,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":863,"start":818,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":220,"start":149,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1286,"start":1197,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":116,"start":79,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":698,"start":669,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1048,"start":994,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1085,"start":1048,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":21},{"feature_index":1,"overlap_bases":19},{"feature_index":2,"overlap_bases":21}],"query_bed":[273,294],"query_length":21,"union_overlap_bases":21},"family":"nested","fingerprint":"3fe9c8a22d142b922df37a866e309081b21b67cfb7762984d9fb5c0d05a074c2","group_id":"3fe9c8a22d142b922df37a866e309081b21b67cfb7762984d9fb5c0d05a074c2","id":"INTERVALS-0009306","index":9306,"input":{"contigs":{"synthetic_A":774,"synthetic_B":1363},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":299,"start":268,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":293,"start":274,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":324,"start":217,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1264,"start":1144,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1031,"start":963,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":294,"start":273,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":65}],"query_bed":[419,484],"query_length":65,"union_overlap_bases":65},"family":"coordinate_conversion","fingerprint":"24939a60463cc25b639b967de0e06b7f74247df1c6079adaa52cf2af6af853ca","group_id":"24939a60463cc25b639b967de0e06b7f74247df1c6079adaa52cf2af6af853ca","id":"INTERVALS-0009314","index":9314,"input":{"contigs":{"synthetic_A":1703,"synthetic_B":1193},"features":[{"basis":"one_closed","contig":"synthetic_B","end":484,"start":420,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":261,"start":220,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":238,"start":170,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1183,"start":1182,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":792,"start":722,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":114,"start":52,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1579,"start":1555,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":484,"start":420,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":72}],"query_bed":[1067,1139],"query_length":72,"union_overlap_bases":72},"family":"stranded","fingerprint":"d5971e181f826875566dfb429f2f056bac7faf81155e07499c26b0b1f917bc78","group_id":"d5971e181f826875566dfb429f2f056bac7faf81155e07499c26b0b1f917bc78","id":"INTERVALS-0009318","index":9318,"input":{"contigs":{"synthetic_A":1191,"synthetic_B":1715},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1139,"start":1067,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1139,"start":1068,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":396,"start":298,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":966,"start":961,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":492,"start":410,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1139,"start":1067,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":33},{"feature_index":1,"overlap_bases":31}],"query_bed":[901,934],"query_length":33,"union_overlap_bases":33},"family":"nested","fingerprint":"7064649234df61e6422258e4041f702aa342c53f7ba23b3c8ad571247fccf9b6","group_id":"7064649234df61e6422258e4041f702aa342c53f7ba23b3c8ad571247fccf9b6","id":"INTERVALS-0009321","index":9321,"input":{"contigs":{"synthetic_A":1486,"synthetic_B":613},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":939,"start":896,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":933,"start":903,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":292,"start":232,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":472,"start":388,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":550,"start":459,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":934,"start":902,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":69}],"query_bed":[613,682],"query_length":69,"union_overlap_bases":69},"family":"coordinate_conversion","fingerprint":"83f31a4e039d77ffb065044292e73c04d98cb458cfa1b33d6bfac416c780135d","group_id":"83f31a4e039d77ffb065044292e73c04d98cb458cfa1b33d6bfac416c780135d","id":"INTERVALS-0009324","index":9324,"input":{"contigs":{"synthetic_A":1189,"synthetic_B":842},"features":[{"basis":"one_closed","contig":"synthetic_B","end":682,"start":614,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":581,"start":504,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":245,"start":128,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":419,"start":301,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":620,"start":620,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":264,"start":198,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":595,"start":506,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":404,"start":381,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":719,"start":625,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":229,"start":192,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":682,"start":614,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":56},{"feature_index":2,"overlap_bases":2}],"query_bed":[631,688],"query_length":57,"union_overlap_bases":57},"family":"overlapping_blocks","fingerprint":"273970e6122d6ff23f49ce2461bc1ac88d25c3b871a9ecc26ee8c40233627309","group_id":"273970e6122d6ff23f49ce2461bc1ac88d25c3b871a9ecc26ee8c40233627309","id":"INTERVALS-0009327","index":9327,"input":{"contigs":{"synthetic_A":681,"synthetic_B":1183},"features":[{"basis":"one_closed","contig":"synthetic_B","end":634,"start":629,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":688,"start":633,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":691,"start":686,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1155,"start":1049,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":931,"start":858,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":155,"start":109,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":814,"start":805,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":907,"start":865,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":300,"start":264,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":539,"start":503,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":113,"start":79,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":688,"start":632,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":36}],"query_bed":[434,470],"query_length":36,"union_overlap_bases":36},"family":"stranded","fingerprint":"2aae7bb860eda72af9ad7f748f09e9b3497d2b48ffc4a1bae5fcbacddcfbb5e4","group_id":"2aae7bb860eda72af9ad7f748f09e9b3497d2b48ffc4a1bae5fcbacddcfbb5e4","id":"INTERVALS-0009333","index":9333,"input":{"contigs":{"synthetic_A":1030,"synthetic_B":965},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":470,"start":434,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":470,"start":434,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":760,"start":661,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":324,"start":318,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":819,"start":781,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":470,"start":434,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":34}],"query_bed":[325,359],"query_length":34,"union_overlap_bases":34},"family":"coordinate_conversion","fingerprint":"c536a08e0968645760aa0e61e018bff53d87f3887f93ff173964c2c030f2f350","group_id":"c536a08e0968645760aa0e61e018bff53d87f3887f93ff173964c2c030f2f350","id":"INTERVALS-0009344","index":9344,"input":{"contigs":{"synthetic_A":1178,"synthetic_B":1637},"features":[{"basis":"one_closed","contig":"synthetic_A","end":359,"start":326,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":663,"start":636,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1603,"start":1488,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1057,"start":999,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":873,"start":868,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":623,"start":600,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":287,"start":238,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":162,"start":97,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":359,"start":326,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[705,785],"query_length":80,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"08392790e977a910c4122d4d98b62dbfb6e8a889e0f07e6baffcd30c6a822c92","group_id":"08392790e977a910c4122d4d98b62dbfb6e8a889e0f07e6baffcd30c6a822c92","id":"INTERVALS-0009350","index":9350,"input":{"contigs":{"synthetic_A":1189,"synthetic_B":1277},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":705,"start":691,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":824,"start":785,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":429,"start":318,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":680,"start":680,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":64,"start":18,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":838,"start":771,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":711,"start":669,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":447,"start":398,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":145,"start":75,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1012,"start":917,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":269,"start":259,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":785,"start":705,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":42},{"feature_index":2,"overlap_bases":2},{"feature_index":3,"overlap_bases":16}],"query_bed":[461,504],"query_length":43,"union_overlap_bases":43},"family":"overlapping_blocks","fingerprint":"546cf182e9525724b411ba173e8dc9c10746f2e3f7b624db5d92d57405023bcb","group_id":"546cf182e9525724b411ba173e8dc9c10746f2e3f7b624db5d92d57405023bcb","id":"INTERVALS-0009362","index":9362,"input":{"contigs":{"synthetic_A":962,"synthetic_B":772},"features":[{"basis":"one_closed","contig":"synthetic_B","end":464,"start":459,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":504,"start":463,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":507,"start":502,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":477,"start":437,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":748,"start":648,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":200,"start":128,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":773,"start":769,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":174,"start":71,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":714,"start":693,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":504,"start":461,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":35},{"feature_index":1,"overlap_bases":33}],"query_bed":[315,350],"query_length":35,"union_overlap_bases":35},"family":"nested","fingerprint":"6a55c83e4f838ed17dad9105345959838b83134b6b6c8598c4ea0b746b6a9b7d","group_id":"6a55c83e4f838ed17dad9105345959838b83134b6b6c8598c4ea0b746b6a9b7d","id":"INTERVALS-0009376","index":9376,"input":{"contigs":{"synthetic_A":660,"synthetic_B":819},"features":[{"basis":"one_closed","contig":"synthetic_A","end":355,"start":311,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":349,"start":316,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":289,"start":246,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":507,"start":491,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":441,"start":410,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":93,"start":92,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":521,"start":498,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":482,"start":382,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":103,"start":43,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":249,"start":247,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":539,"start":442,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":251,"start":206,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":350,"start":316,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":31},{"feature_index":2,"overlap_bases":2}],"query_bed":[360,392],"query_length":32,"union_overlap_bases":32},"family":"overlapping_blocks","fingerprint":"7a12d1cc658da4866ada82ef44f9fe9d7b5fe62d95d64ded3fc7c63286ab18e1","group_id":"7a12d1cc658da4866ada82ef44f9fe9d7b5fe62d95d64ded3fc7c63286ab18e1","id":"INTERVALS-0009377","index":9377,"input":{"contigs":{"synthetic_A":881,"synthetic_B":1582},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":363,"start":357,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":392,"start":361,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":395,"start":390,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":733,"start":693,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":776,"start":703,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":226,"start":113,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":45,"start":17,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":392,"start":360,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":40},{"feature_index":2,"overlap_bases":2}],"query_bed":[632,673],"query_length":41,"union_overlap_bases":41},"family":"overlapping_blocks","fingerprint":"c2f941e62afc1a1ca82c7d33a257544112b99972ef7cb05409d576b62a36c9fa","group_id":"c2f941e62afc1a1ca82c7d33a257544112b99972ef7cb05409d576b62a36c9fa","id":"INTERVALS-0009382","index":9382,"input":{"contigs":{"synthetic_A":904,"synthetic_B":1757},"features":[{"basis":"one_closed","contig":"synthetic_A","end":635,"start":630,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":673,"start":634,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":676,"start":671,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":933,"start":868,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":58,"start":13,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":800,"start":784,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":43,"start":39,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":288,"start":171,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1078,"start":968,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":192,"start":74,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1421,"start":1417,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":673,"start":633,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":25},{"feature_index":2,"overlap_bases":17}],"query_bed":[692,717],"query_length":25,"union_overlap_bases":25},"family":"coordinate_conversion","fingerprint":"67f59b78f684695cf285c2d965e964de1ad1e64c0b68f2f97e979081a2a00333","group_id":"67f59b78f684695cf285c2d965e964de1ad1e64c0b68f2f97e979081a2a00333","id":"INTERVALS-0009404","index":9404,"input":{"contigs":{"synthetic_A":904,"synthetic_B":690},"features":[{"basis":"one_closed","contig":"synthetic_A","end":717,"start":693,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":255,"start":231,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":720,"start":701,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":432,"start":368,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":133,"start":39,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":171,"start":168,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":245,"start":152,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":584,"start":530,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":191,"start":81,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":114,"start":51,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":717,"start":693,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":22},{"feature_index":2,"overlap_bases":2}],"query_bed":[650,673],"query_length":23,"union_overlap_bases":23},"family":"overlapping_blocks","fingerprint":"6cf6d7b8b8d1dc013e2f2fff272ff32ef0f97f11cd3204f0d4ee8a1736d76e49","group_id":"6cf6d7b8b8d1dc013e2f2fff272ff32ef0f97f11cd3204f0d4ee8a1736d76e49","id":"INTERVALS-0009412","index":9412,"input":{"contigs":{"synthetic_A":1168,"synthetic_B":856},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":653,"start":647,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":673,"start":652,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":676,"start":672,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":455,"start":413,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":958,"start":868,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":507,"start":473,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":594,"start":550,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":238,"start":119,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":639,"start":587,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":460,"start":459,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":222,"start":117,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":673,"start":651,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":27},{"feature_index":1,"overlap_bases":25},{"feature_index":5,"overlap_bases":22}],"query_bed":[138,165],"query_length":27,"union_overlap_bases":27},"family":"nested","fingerprint":"8ed43f4c475b4bac239c2a5cfc715007a81cc8d2850d48007451ab0257ebb917","group_id":"8ed43f4c475b4bac239c2a5cfc715007a81cc8d2850d48007451ab0257ebb917","id":"INTERVALS-0009461","index":9461,"input":{"contigs":{"synthetic_A":1359,"synthetic_B":1160},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":170,"start":133,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":164,"start":139,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":598,"start":517,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":690,"start":576,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":67,"start":21,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":160,"start":129,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1035,"start":1004,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":165,"start":138,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18},{"feature_index":1,"overlap_bases":16}],"query_bed":[634,652],"query_length":18,"union_overlap_bases":18},"family":"nested","fingerprint":"ce419fb22b86b9d2c365b9ef691477c729abaac7b7e2bec84107ab4c2c1ac32d","group_id":"ce419fb22b86b9d2c365b9ef691477c729abaac7b7e2bec84107ab4c2c1ac32d","id":"INTERVALS-0009466","index":9466,"input":{"contigs":{"synthetic_A":942,"synthetic_B":926},"features":[{"basis":"one_closed","contig":"synthetic_B","end":657,"start":630,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":651,"start":636,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":866,"start":761,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":166,"start":111,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":250,"start":218,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":661,"start":660,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":909,"start":808,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":608,"start":605,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":454,"start":447,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":786,"start":714,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":652,"start":635,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":79},{"feature_index":1,"overlap_bases":77}],"query_bed":[464,543],"query_length":79,"union_overlap_bases":79},"family":"nested","fingerprint":"99177e9c9986ee8c60cf5226ac7c6a5e3bcd08e2b42a63deb479cac7e5528877","group_id":"99177e9c9986ee8c60cf5226ac7c6a5e3bcd08e2b42a63deb479cac7e5528877","id":"INTERVALS-0009471","index":9471,"input":{"contigs":{"synthetic_A":891,"synthetic_B":1150},"features":[{"basis":"one_closed","contig":"synthetic_B","end":548,"start":460,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":542,"start":465,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":182,"start":125,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":796,"start":743,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":178,"start":63,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":543,"start":464,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":60}],"query_bed":[506,566],"query_length":60,"union_overlap_bases":60},"family":"stranded","fingerprint":"fd66a0ee8d912cb7ce53e9a980ead2a467c07b2b2230588ff457f4a9aae91266","group_id":"fd66a0ee8d912cb7ce53e9a980ead2a467c07b2b2230588ff457f4a9aae91266","id":"INTERVALS-0009478","index":9478,"input":{"contigs":{"synthetic_A":1535,"synthetic_B":719},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":566,"start":506,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":566,"start":507,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":383,"start":320,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":229,"start":131,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":342,"start":232,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":303,"start":205,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":595,"start":522,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":708,"start":608,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":246,"start":218,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":206,"start":178,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1198,"start":1098,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":566,"start":507,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":9}],"query_bed":[1059,1068],"query_length":9,"union_overlap_bases":9},"family":"coordinate_conversion","fingerprint":"558b43a276fde16303c562e138cd1465dcfabee4053ef5fab0040a6d8d958b55","group_id":"558b43a276fde16303c562e138cd1465dcfabee4053ef5fab0040a6d8d958b55","id":"INTERVALS-0009494","index":9494,"input":{"contigs":{"synthetic_A":1124,"synthetic_B":1281},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1068,"start":1060,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":100,"start":33,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":432,"start":374,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":531,"start":488,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":370,"start":264,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":548,"start":442,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":980,"start":861,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":799,"start":682,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1068,"start":1060,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":63}],"query_bed":[1103,1166],"query_length":63,"union_overlap_bases":63},"family":"stranded","fingerprint":"0a8efb1edea483ddbdc13aeb38661e94789415c1379dcc197d81d8baaa264b6c","group_id":"0a8efb1edea483ddbdc13aeb38661e94789415c1379dcc197d81d8baaa264b6c","id":"INTERVALS-0009503","index":9503,"input":{"contigs":{"synthetic_A":1278,"synthetic_B":1574},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1166,"start":1104,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1166,"start":1103,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1327,"start":1314,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":992,"start":920,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":84,"start":82,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":811,"start":765,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1266,"start":1169,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1187,"start":1148,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":675,"start":589,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1417,"start":1365,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1166,"start":1104,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":62},{"feature_index":2,"overlap_bases":2}],"query_bed":[878,941],"query_length":63,"union_overlap_bases":63},"family":"overlapping_blocks","fingerprint":"073ba1ba1db042025df2fac0c113d3ce52b052eec40e7003a79ee62def5d67e0","group_id":"073ba1ba1db042025df2fac0c113d3ce52b052eec40e7003a79ee62def5d67e0","id":"INTERVALS-0009512","index":9512,"input":{"contigs":{"synthetic_A":1689,"synthetic_B":827},"features":[{"basis":"one_closed","contig":"synthetic_A","end":881,"start":876,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":941,"start":879,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":944,"start":939,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":314,"start":271,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1163,"start":1152,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":574,"start":498,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":941,"start":878,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56},{"feature_index":1,"overlap_bases":54}],"query_bed":[721,777],"query_length":56,"union_overlap_bases":56},"family":"nested","fingerprint":"80718022fae2069c7c3c4822ee1a1c59293b9bf271b4cd9740386bafc42d51e2","group_id":"80718022fae2069c7c3c4822ee1a1c59293b9bf271b4cd9740386bafc42d51e2","id":"INTERVALS-0009516","index":9516,"input":{"contigs":{"synthetic_A":1326,"synthetic_B":1274},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":782,"start":716,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":776,"start":722,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":590,"start":554,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":36,"start":10,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1201,"start":1127,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":777,"start":721,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":35},{"feature_index":1,"overlap_bases":33}],"query_bed":[703,738],"query_length":35,"union_overlap_bases":35},"family":"nested","fingerprint":"7002a6e4b6e04d5cdf7e504a2c027213097dcef2e419c38719384d20c1bcd918","group_id":"7002a6e4b6e04d5cdf7e504a2c027213097dcef2e419c38719384d20c1bcd918","id":"INTERVALS-0009546","index":9546,"input":{"contigs":{"synthetic_A":1428,"synthetic_B":705},"features":[{"basis":"one_closed","contig":"synthetic_A","end":743,"start":699,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":737,"start":704,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":872,"start":772,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":535,"start":506,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":483,"start":455,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":458,"start":376,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":995,"start":890,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":319,"start":215,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1376,"start":1300,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":804,"start":758,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":738,"start":704,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":67}],"query_bed":[676,743],"query_length":67,"union_overlap_bases":67},"family":"stranded","fingerprint":"e8045f70d043526a9b220bb0b8cbc8c412db545cdd0a9cf1fd06db846538229a","group_id":"e8045f70d043526a9b220bb0b8cbc8c412db545cdd0a9cf1fd06db846538229a","id":"INTERVALS-0009548","index":9548,"input":{"contigs":{"synthetic_A":1096,"synthetic_B":1549},"features":[{"basis":"one_closed","contig":"synthetic_A","end":743,"start":677,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":743,"start":677,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":543,"start":477,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":974,"start":895,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1042,"start":940,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1052,"start":958,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":416,"start":395,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":792,"start":724,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":800,"start":742,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":743,"start":677,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":67},{"feature_index":3,"overlap_bases":67}],"query_bed":[236,303],"query_length":67,"union_overlap_bases":67},"family":"stranded","fingerprint":"6ad2834ca2f3ebdfaefbc7720a51e5a0b106d0ffa8c6614d74a259c3cbc361b1","group_id":"6ad2834ca2f3ebdfaefbc7720a51e5a0b106d0ffa8c6614d74a259c3cbc361b1","id":"INTERVALS-0009563","index":9563,"input":{"contigs":{"synthetic_A":1254,"synthetic_B":1257},"features":[{"basis":"one_closed","contig":"synthetic_B","end":303,"start":237,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":303,"start":236,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":92,"start":45,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":310,"start":231,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":423,"start":316,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":634,"start":622,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":303,"start":237,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":54},{"feature_index":2,"overlap_bases":2}],"query_bed":[295,350],"query_length":55,"union_overlap_bases":55},"family":"overlapping_blocks","fingerprint":"d3d54eceb1713bfa516046b731d392279d44effce3d2d5af0299acbf671113e2","group_id":"d3d54eceb1713bfa516046b731d392279d44effce3d2d5af0299acbf671113e2","id":"INTERVALS-0009567","index":9567,"input":{"contigs":{"synthetic_A":1519,"synthetic_B":969},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":298,"start":292,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":350,"start":297,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":353,"start":349,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":55,"start":40,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":950,"start":846,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":508,"start":453,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1205,"start":1203,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":224,"start":164,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":704,"start":673,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":350,"start":296,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":74},{"feature_index":1,"overlap_bases":72}],"query_bed":[338,412],"query_length":74,"union_overlap_bases":74},"family":"nested","fingerprint":"7b4a47aac850fb2b920d2cfc2050294070d298ccd212003ad4f37829150e55cb","group_id":"7b4a47aac850fb2b920d2cfc2050294070d298ccd212003ad4f37829150e55cb","id":"INTERVALS-0009576","index":9576,"input":{"contigs":{"synthetic_A":919,"synthetic_B":1619},"features":[{"basis":"one_closed","contig":"synthetic_B","end":417,"start":334,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":411,"start":339,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":709,"start":641,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":411,"start":407,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":676,"start":644,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":434,"start":393,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":412,"start":339,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":8},{"feature_index":1,"overlap_bases":6}],"query_bed":[164,172],"query_length":8,"union_overlap_bases":8},"family":"nested","fingerprint":"e7e2c9c8d75567158ecc5c5143190ce4672ffbe7a0bd4389b014027f67ec39cd","group_id":"e7e2c9c8d75567158ecc5c5143190ce4672ffbe7a0bd4389b014027f67ec39cd","id":"INTERVALS-0009581","index":9581,"input":{"contigs":{"synthetic_A":1604,"synthetic_B":968},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":177,"start":159,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":171,"start":166,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":631,"start":546,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1571,"start":1483,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":156,"start":98,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":172,"start":165,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":29},{"feature_index":1,"overlap_bases":27}],"query_bed":[854,883],"query_length":29,"union_overlap_bases":29},"family":"nested","fingerprint":"a3272342d6a438d254a24f7f534bf1e2045b465df3b5e4c8690b448ca94aacf6","group_id":"a3272342d6a438d254a24f7f534bf1e2045b465df3b5e4c8690b448ca94aacf6","id":"INTERVALS-0009586","index":9586,"input":{"contigs":{"synthetic_A":1786,"synthetic_B":1174},"features":[{"basis":"one_closed","contig":"synthetic_B","end":888,"start":850,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":882,"start":855,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":922,"start":871,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":758,"start":749,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":253,"start":219,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":753,"start":708,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1380,"start":1314,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":768,"start":669,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":755,"start":725,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1181,"start":1139,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":883,"start":855,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":20},{"feature_index":5,"overlap_bases":20}],"query_bed":[1060,1080],"query_length":20,"union_overlap_bases":20},"family":"coordinate_conversion","fingerprint":"5b1f6c1c0314bb5a1085d529fc5b8085d8543e9e56ec7465f628cd0fc8c7f305","group_id":"5b1f6c1c0314bb5a1085d529fc5b8085d8543e9e56ec7465f628cd0fc8c7f305","id":"INTERVALS-0009609","index":9609,"input":{"contigs":{"synthetic_A":1605,"synthetic_B":998},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1080,"start":1061,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":140,"start":30,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":611,"start":576,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":802,"start":729,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":418,"start":365,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1109,"start":1043,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":515,"start":493,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1392,"start":1389,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":114,"start":24,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1080,"start":1061,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[144,154],"query_length":10,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"b1a3827671add5aee097c64c9cc7c9185abaf0f3ded7d613cb7bdd06a7d0d12a","group_id":"b1a3827671add5aee097c64c9cc7c9185abaf0f3ded7d613cb7bdd06a7d0d12a","id":"INTERVALS-0009620","index":9620,"input":{"contigs":{"synthetic_A":1576,"synthetic_B":1085},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":144,"start":140,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":170,"start":154,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":694,"start":640,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":373,"start":282,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1234,"start":1228,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":698,"start":619,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1254,"start":1219,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":154,"start":144,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":6},{"feature_index":3,"overlap_bases":6}],"query_bed":[666,672],"query_length":6,"union_overlap_bases":6},"family":"stranded","fingerprint":"1cf48e7c108586f1b921b124e29f799028fbd274781151960cb4b436c69d4e75","group_id":"1cf48e7c108586f1b921b124e29f799028fbd274781151960cb4b436c69d4e75","id":"INTERVALS-0009628","index":9628,"input":{"contigs":{"synthetic_A":1281,"synthetic_B":1571},"features":[{"basis":"one_closed","contig":"synthetic_A","end":672,"start":667,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":672,"start":666,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":766,"start":738,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":704,"start":666,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1189,"start":1176,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1019,"start":935,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":336,"start":283,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":107,"start":75,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":672,"start":666,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[808,862],"query_length":54,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"43424eacb7bd1373069c5fbc3bf98ea9a94696ddff2aadbc8e2a045af15a3847","group_id":"43424eacb7bd1373069c5fbc3bf98ea9a94696ddff2aadbc8e2a045af15a3847","id":"INTERVALS-0009635","index":9635,"input":{"contigs":{"synthetic_A":809,"synthetic_B":1735},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":808,"start":791,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":894,"start":863,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1292,"start":1284,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":634,"start":575,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":603,"start":589,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":757,"start":638,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1366,"start":1315,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":222,"start":181,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":482,"start":413,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1590,"start":1581,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":862,"start":808,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":55},{"feature_index":1,"overlap_bases":53}],"query_bed":[171,226],"query_length":55,"union_overlap_bases":55},"family":"nested","fingerprint":"1c31b42419917cfc47e3883fc3f7bf1b0a2c2c2f338a1d18e73b74fb16124f20","group_id":"1c31b42419917cfc47e3883fc3f7bf1b0a2c2c2f338a1d18e73b74fb16124f20","id":"INTERVALS-0009636","index":9636,"input":{"contigs":{"synthetic_A":1358,"synthetic_B":1549},"features":[{"basis":"one_closed","contig":"synthetic_A","end":231,"start":167,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":225,"start":172,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":498,"start":476,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":933,"start":913,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":707,"start":604,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1249,"start":1179,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":174,"start":77,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":528,"start":475,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":415,"start":312,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1083,"start":993,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":303,"start":290,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":678,"start":590,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":226,"start":172,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":65}],"query_bed":[833,898],"query_length":65,"union_overlap_bases":65},"family":"coordinate_conversion","fingerprint":"a83e16563ff9e7c9b47ba118fae60ecc75cfc5e60ef071016d73e672c8f7c3c5","group_id":"a83e16563ff9e7c9b47ba118fae60ecc75cfc5e60ef071016d73e672c8f7c3c5","id":"INTERVALS-0009644","index":9644,"input":{"contigs":{"synthetic_A":1091,"synthetic_B":866},"features":[{"basis":"one_closed","contig":"synthetic_A","end":898,"start":834,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":532,"start":513,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":816,"start":740,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":43,"start":30,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":669,"start":604,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":261,"start":151,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":898,"start":834,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":75}],"query_bed":[358,433],"query_length":75,"union_overlap_bases":75},"family":"coordinate_conversion","fingerprint":"d424209ee18860b6681f2c08ea86f79c43d0ea7aeb1952529df9708fb4622f04","group_id":"d424209ee18860b6681f2c08ea86f79c43d0ea7aeb1952529df9708fb4622f04","id":"INTERVALS-0009664","index":9664,"input":{"contigs":{"synthetic_A":1340,"synthetic_B":888},"features":[{"basis":"one_closed","contig":"synthetic_B","end":433,"start":359,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":996,"start":974,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":752,"start":636,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":824,"start":752,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":962,"start":949,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":682,"start":635,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":579,"start":539,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":593,"start":488,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":433,"start":359,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":49}],"query_bed":[384,433],"query_length":49,"union_overlap_bases":49},"family":"coordinate_conversion","fingerprint":"2e1bcd8c57e551732b6c3ebc6113fff9e192bdef8dff66891eefa8e75018df50","group_id":"2e1bcd8c57e551732b6c3ebc6113fff9e192bdef8dff66891eefa8e75018df50","id":"INTERVALS-0009709","index":9709,"input":{"contigs":{"synthetic_A":1362,"synthetic_B":1396},"features":[{"basis":"one_closed","contig":"synthetic_B","end":433,"start":385,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":528,"start":478,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":663,"start":586,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1169,"start":1096,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":199,"start":128,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1225,"start":1192,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":433,"start":385,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":55},{"feature_index":1,"overlap_bases":53}],"query_bed":[136,191],"query_length":55,"union_overlap_bases":55},"family":"nested","fingerprint":"0de46ac430bf2c295923c2d7a735df680c0752f9f0fa868b74655f95258d414e","group_id":"0de46ac430bf2c295923c2d7a735df680c0752f9f0fa868b74655f95258d414e","id":"INTERVALS-0009711","index":9711,"input":{"contigs":{"synthetic_A":745,"synthetic_B":1644},"features":[{"basis":"one_closed","contig":"synthetic_A","end":196,"start":132,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":190,"start":137,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1582,"start":1465,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":226,"start":224,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":587,"start":576,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1040,"start":989,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":191,"start":136,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":17},{"feature_index":2,"overlap_bases":2}],"query_bed":[67,85],"query_length":18,"union_overlap_bases":18},"family":"overlapping_blocks","fingerprint":"4e626c86e6c961b0ee767bc3b8c21f55ec8947e0d28695b4bf5a5fe6cf377ce5","group_id":"4e626c86e6c961b0ee767bc3b8c21f55ec8947e0d28695b4bf5a5fe6cf377ce5","id":"INTERVALS-0009712","index":9712,"input":{"contigs":{"synthetic_A":728,"synthetic_B":764},"features":[{"basis":"one_closed","contig":"synthetic_A","end":70,"start":65,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":85,"start":69,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":88,"start":84,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":461,"start":394,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":425,"start":376,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":491,"start":487,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":85,"start":68,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":24},{"feature_index":1,"overlap_bases":22},{"feature_index":3,"overlap_bases":24}],"query_bed":[947,971],"query_length":24,"union_overlap_bases":24},"family":"nested","fingerprint":"5a2aa4acd39a5e42cc3e3870ab53e459292ae713c3c73df966b9b7e90f8816aa","group_id":"5a2aa4acd39a5e42cc3e3870ab53e459292ae713c3c73df966b9b7e90f8816aa","id":"INTERVALS-0009721","index":9721,"input":{"contigs":{"synthetic_A":1174,"synthetic_B":1324},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":976,"start":942,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":970,"start":949,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":667,"start":644,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1026,"start":907,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":173,"start":71,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":164,"start":134,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":971,"start":948,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":28},{"feature_index":2,"overlap_bases":2}],"query_bed":[1040,1069],"query_length":29,"union_overlap_bases":29},"family":"overlapping_blocks","fingerprint":"4c050e6c4dce1c3575c21308e6daeed58aedd75a685a9b1572be61513654f35b","group_id":"4c050e6c4dce1c3575c21308e6daeed58aedd75a685a9b1572be61513654f35b","id":"INTERVALS-0009737","index":9737,"input":{"contigs":{"synthetic_A":1506,"synthetic_B":1576},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1043,"start":1038,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1069,"start":1041,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1072,"start":1068,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":621,"start":596,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":658,"start":605,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":87,"start":85,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":286,"start":169,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":382,"start":292,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":789,"start":699,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1069,"start":1041,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":29},{"feature_index":5,"overlap_bases":29}],"query_bed":[410,439],"query_length":29,"union_overlap_bases":29},"family":"stranded","fingerprint":"77a3515027c18a2a129d4a516bb01bdf049b74093971d7a02042a0dc390fa6ca","group_id":"77a3515027c18a2a129d4a516bb01bdf049b74093971d7a02042a0dc390fa6ca","id":"INTERVALS-0009753","index":9753,"input":{"contigs":{"synthetic_A":707,"synthetic_B":627},"features":[{"basis":"one_closed","contig":"synthetic_B","end":439,"start":411,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":439,"start":410,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":291,"start":213,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":160,"start":49,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":536,"start":527,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":443,"start":372,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":577,"start":502,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":162,"start":120,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":676,"start":573,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":574,"start":461,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":439,"start":411,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":61},{"feature_index":2,"overlap_bases":2},{"feature_index":9,"overlap_bases":62}],"query_bed":[656,718],"query_length":62,"union_overlap_bases":62},"family":"overlapping_blocks","fingerprint":"1cc0b75ad2dac9323e2e2b090c5401f95ede3e2ddda060840dabfca7cee52f1d","group_id":"1cc0b75ad2dac9323e2e2b090c5401f95ede3e2ddda060840dabfca7cee52f1d","id":"INTERVALS-0009757","index":9757,"input":{"contigs":{"synthetic_A":631,"synthetic_B":1275},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":659,"start":653,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":718,"start":657,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":721,"start":717,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":890,"start":781,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":583,"start":507,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1094,"start":1084,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":278,"start":188,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":284,"start":281,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":356,"start":300,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":745,"start":630,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1053,"start":980,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":718,"start":656,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":32}],"query_bed":[311,343],"query_length":32,"union_overlap_bases":32},"family":"stranded","fingerprint":"61051fbe62d3a91d92818f5e383ec4c79d801e31b9222994fa33114d112da2b8","group_id":"61051fbe62d3a91d92818f5e383ec4c79d801e31b9222994fa33114d112da2b8","id":"INTERVALS-0009778","index":9778,"input":{"contigs":{"synthetic_A":636,"synthetic_B":1689},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":343,"start":311,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":343,"start":312,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":735,"start":649,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":584,"start":466,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":204,"start":90,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":70,"start":6,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":343,"start":311,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":48}],"query_bed":[361,409],"query_length":48,"union_overlap_bases":48},"family":"stranded","fingerprint":"6b7862f80c5ffdcbcc68ec5df7833d680099a329bbc5df8fdad1b195f54c969c","group_id":"6b7862f80c5ffdcbcc68ec5df7833d680099a329bbc5df8fdad1b195f54c969c","id":"INTERVALS-0009793","index":9793,"input":{"contigs":{"synthetic_A":1325,"synthetic_B":688},"features":[{"basis":"one_closed","contig":"synthetic_A","end":409,"start":362,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":409,"start":361,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":621,"start":511,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":909,"start":821,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1240,"start":1149,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":74,"start":51,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":120,"start":87,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":409,"start":362,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":58}],"query_bed":[103,161],"query_length":58,"union_overlap_bases":58},"family":"coordinate_conversion","fingerprint":"376ecccc8cfd68e821d8ca643098e446f68df4a419c2c243e31f5d17d5af0a60","group_id":"376ecccc8cfd68e821d8ca643098e446f68df4a419c2c243e31f5d17d5af0a60","id":"INTERVALS-0009794","index":9794,"input":{"contigs":{"synthetic_A":965,"synthetic_B":1718},"features":[{"basis":"one_closed","contig":"synthetic_B","end":161,"start":104,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":459,"start":399,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":547,"start":439,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":517,"start":444,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1119,"start":1023,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":719,"start":602,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1453,"start":1338,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1375,"start":1286,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":73,"start":1,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":161,"start":104,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":33}],"query_bed":[22,55],"query_length":33,"union_overlap_bases":33},"family":"stranded","fingerprint":"4e49bcea97cdf9c5ee7edad24cd9657b28995d6f1ce03205e456b2a81d59ffea","group_id":"4e49bcea97cdf9c5ee7edad24cd9657b28995d6f1ce03205e456b2a81d59ffea","id":"INTERVALS-0009808","index":9808,"input":{"contigs":{"synthetic_A":1051,"synthetic_B":1161},"features":[{"basis":"one_closed","contig":"synthetic_B","end":55,"start":23,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":55,"start":22,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1139,"start":1032,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":332,"start":285,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":978,"start":880,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":928,"start":874,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":399,"start":388,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":740,"start":628,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":903,"start":886,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":484,"start":402,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":431,"start":379,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":55,"start":23,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":36}],"query_bed":[272,308],"query_length":36,"union_overlap_bases":36},"family":"stranded","fingerprint":"9b1df3e290c7131f98721e8a391c3ac9568f028a419a06de69301651dd494b33","group_id":"9b1df3e290c7131f98721e8a391c3ac9568f028a419a06de69301651dd494b33","id":"INTERVALS-0009813","index":9813,"input":{"contigs":{"synthetic_A":1507,"synthetic_B":676},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":308,"start":272,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":308,"start":273,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":123,"start":66,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":555,"start":496,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":689,"start":648,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":105,"start":57,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":92,"start":56,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":308,"start":272,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[617,667],"query_length":50,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"4ccf26fccbd9bd21ddc10985066a4dd5ffb46a31f6f6e31d39be511a39eb65fc","group_id":"4ccf26fccbd9bd21ddc10985066a4dd5ffb46a31f6f6e31d39be511a39eb65fc","id":"INTERVALS-0009815","index":9815,"input":{"contigs":{"synthetic_A":1000,"synthetic_B":1223},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":617,"start":616,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":704,"start":668,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":925,"start":850,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1196,"start":1090,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":342,"start":243,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":546,"start":491,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":464,"start":398,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":437,"start":334,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":631,"start":513,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":322,"start":315,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":897,"start":799,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":667,"start":617,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[25,71],"query_length":46,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"a70b2094e54ab66befce98f5f2667c9c1fe924bdad2014fd2de3f7948f5ef413","group_id":"a70b2094e54ab66befce98f5f2667c9c1fe924bdad2014fd2de3f7948f5ef413","id":"INTERVALS-0009825","index":9825,"input":{"contigs":{"synthetic_A":976,"synthetic_B":1477},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":25,"start":22,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":105,"start":72,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":363,"start":288,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":303,"start":240,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":112,"start":45,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":206,"start":135,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1113,"start":1048,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":941,"start":828,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":874,"start":775,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":263,"start":164,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":826,"start":812,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":71,"start":25,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":39}],"query_bed":[327,366],"query_length":39,"union_overlap_bases":39},"family":"stranded","fingerprint":"f52ba91a527098927eb502700ab93cbece8c898b4ae9c25882a898f41fa3165c","group_id":"f52ba91a527098927eb502700ab93cbece8c898b4ae9c25882a898f41fa3165c","id":"INTERVALS-0009828","index":9828,"input":{"contigs":{"synthetic_A":1002,"synthetic_B":633},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":366,"start":327,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":366,"start":327,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":136,"start":133,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":345,"start":331,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":474,"start":382,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":229,"start":225,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":516,"start":509,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":410,"start":404,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":193,"start":167,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":366,"start":327,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":55},{"feature_index":6,"overlap_bases":21}],"query_bed":[317,372],"query_length":55,"union_overlap_bases":55},"family":"stranded","fingerprint":"76e6742c009c5267fa8883ae3df387ebafd55b5ed4e320bd6c2e8ab976844b0f","group_id":"76e6742c009c5267fa8883ae3df387ebafd55b5ed4e320bd6c2e8ab976844b0f","id":"INTERVALS-0009833","index":9833,"input":{"contigs":{"synthetic_A":1127,"synthetic_B":1173},"features":[{"basis":"one_closed","contig":"synthetic_A","end":372,"start":318,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":372,"start":318,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":86,"start":74,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":749,"start":683,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":511,"start":511,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":363,"start":357,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":338,"start":318,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":690,"start":649,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":697,"start":652,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":372,"start":318,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":58},{"feature_index":1,"overlap_bases":56},{"feature_index":4,"overlap_bases":58},{"feature_index":5,"overlap_bases":38}],"query_bed":[77,135],"query_length":58,"union_overlap_bases":58},"family":"nested","fingerprint":"d0f09b00c61b3f4720a4bea1a5bd838f47f91245c7805f6956496ab5e15d9b91","group_id":"d0f09b00c61b3f4720a4bea1a5bd838f47f91245c7805f6956496ab5e15d9b91","id":"INTERVALS-0009836","index":9836,"input":{"contigs":{"synthetic_A":1356,"synthetic_B":748},"features":[{"basis":"one_closed","contig":"synthetic_B","end":140,"start":73,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":134,"start":78,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":442,"start":428,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":422,"start":405,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":161,"start":71,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":115,"start":47,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":135,"start":77,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":79},{"feature_index":1,"overlap_bases":77}],"query_bed":[205,284],"query_length":79,"union_overlap_bases":79},"family":"nested","fingerprint":"4fc47c54c70835c1cd345705748eb619028906959557fb911462a3469cf30f54","group_id":"4fc47c54c70835c1cd345705748eb619028906959557fb911462a3469cf30f54","id":"INTERVALS-0009846","index":9846,"input":{"contigs":{"synthetic_A":1373,"synthetic_B":1314},"features":[{"basis":"one_closed","contig":"synthetic_A","end":289,"start":201,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":283,"start":207,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":650,"start":598,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":761,"start":717,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1316,"start":1222,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":864,"start":751,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1191,"start":1088,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1074,"start":1050,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":806,"start":799,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":719,"start":668,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":971,"start":960,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1341,"start":1248,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":284,"start":206,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":18}],"query_bed":[536,554],"query_length":18,"union_overlap_bases":18},"family":"stranded","fingerprint":"e68901fa680b24da7bd505fe46079267491aa2c90cbeece28543008bc581362a","group_id":"e68901fa680b24da7bd505fe46079267491aa2c90cbeece28543008bc581362a","id":"INTERVALS-0009853","index":9853,"input":{"contigs":{"synthetic_A":998,"synthetic_B":1112},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":554,"start":536,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":554,"start":536,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":633,"start":521,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":608,"start":522,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":914,"start":797,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":689,"start":661,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":456,"start":365,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":554,"start":536,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1072,1105],"query_length":33,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"ba4386baaef01efd75e5a0eff73029b7ee35e88e231477df12a2ea40d18eb455","group_id":"ba4386baaef01efd75e5a0eff73029b7ee35e88e231477df12a2ea40d18eb455","id":"INTERVALS-0009855","index":9855,"input":{"contigs":{"synthetic_A":1636,"synthetic_B":1197},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1072,"start":1066,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1114,"start":1106,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1394,"start":1310,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":369,"start":340,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":183,"start":109,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1472,"start":1432,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1125,"start":1079,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":257,"start":149,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1247,"start":1168,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":335,"start":319,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":832,"start":764,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":604,"start":547,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1105,"start":1072,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":19},{"feature_index":2,"overlap_bases":2},{"feature_index":3,"overlap_bases":20}],"query_bed":[182,202],"query_length":20,"union_overlap_bases":20},"family":"overlapping_blocks","fingerprint":"4389793a8e050e54a823b43c91b69ab0a3b5d39a46533b7d1a5253fa9fbdb004","group_id":"4389793a8e050e54a823b43c91b69ab0a3b5d39a46533b7d1a5253fa9fbdb004","id":"INTERVALS-0009857","index":9857,"input":{"contigs":{"synthetic_A":688,"synthetic_B":806},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":185,"start":179,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":202,"start":183,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":205,"start":200,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":222,"start":173,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":552,"start":538,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":440,"start":388,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":274,"start":219,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":773,"start":678,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":202,"start":182,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":79},{"feature_index":1,"overlap_bases":77}],"query_bed":[334,413],"query_length":79,"union_overlap_bases":79},"family":"nested","fingerprint":"64d36c54323a19bf3e83766e05e07f359f027fe685fafdc5d27111210d5fe613","group_id":"64d36c54323a19bf3e83766e05e07f359f027fe685fafdc5d27111210d5fe613","id":"INTERVALS-0009866","index":9866,"input":{"contigs":{"synthetic_A":984,"synthetic_B":812},"features":[{"basis":"one_closed","contig":"synthetic_A","end":418,"start":330,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":412,"start":335,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":658,"start":610,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":677,"start":649,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":280,"start":268,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":413,"start":335,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":16},{"feature_index":2,"overlap_bases":2}],"query_bed":[176,193],"query_length":17,"union_overlap_bases":17},"family":"overlapping_blocks","fingerprint":"65b2ec4e1be169e867173f1302dd4bbcd3821376087d8d4b756a096753e5e849","group_id":"65b2ec4e1be169e867173f1302dd4bbcd3821376087d8d4b756a096753e5e849","id":"INTERVALS-0009877","index":9877,"input":{"contigs":{"synthetic_A":1070,"synthetic_B":624},"features":[{"basis":"one_closed","contig":"synthetic_A","end":179,"start":174,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":193,"start":178,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":196,"start":192,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":373,"start":353,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":176,"start":171,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":335,"start":323,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":417,"start":353,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":193,"start":176,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":5}],"query_bed":[1152,1157],"query_length":5,"union_overlap_bases":5},"family":"stranded","fingerprint":"6b7264664fb4fd75c26ba4da4cba1e373b19d344734722b19e29e4f17059717e","group_id":"6b7264664fb4fd75c26ba4da4cba1e373b19d344734722b19e29e4f17059717e","id":"INTERVALS-0009878","index":9878,"input":{"contigs":{"synthetic_A":1731,"synthetic_B":1482},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1157,"start":1152,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1157,"start":1152,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":382,"start":344,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":193,"start":170,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1367,"start":1366,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":520,"start":423,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":298,"start":289,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":655,"start":541,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":879,"start":815,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1157,"start":1153,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":58}],"query_bed":[572,630],"query_length":58,"union_overlap_bases":58},"family":"coordinate_conversion","fingerprint":"124a781a11fa965ba256c73980bcb3106ece215626d25772f4a8650830249f86","group_id":"124a781a11fa965ba256c73980bcb3106ece215626d25772f4a8650830249f86","id":"INTERVALS-0009879","index":9879,"input":{"contigs":{"synthetic_A":1487,"synthetic_B":1478},"features":[{"basis":"one_closed","contig":"synthetic_A","end":630,"start":573,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1376,"start":1346,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":375,"start":288,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":266,"start":260,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":624,"start":514,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":538,"start":528,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":769,"start":670,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":369,"start":320,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":737,"start":683,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":68,"start":29,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":323,"start":232,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":630,"start":573,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":59}],"query_bed":[108,167],"query_length":59,"union_overlap_bases":59},"family":"coordinate_conversion","fingerprint":"7d98444e14bebdb99d64e5e342f0ed1e3cfd1775627216026088fb819517b420","group_id":"7d98444e14bebdb99d64e5e342f0ed1e3cfd1775627216026088fb819517b420","id":"INTERVALS-0009884","index":9884,"input":{"contigs":{"synthetic_A":1614,"synthetic_B":1027},"features":[{"basis":"one_closed","contig":"synthetic_B","end":167,"start":109,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":52,"start":34,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":855,"start":818,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":277,"start":211,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":605,"start":506,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":792,"start":701,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":733,"start":731,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":900,"start":827,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":560,"start":527,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":167,"start":109,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[304,340],"query_length":36,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e2a3bdf0046a0aea57260d8731231c4a3c6847ef5c1967d829115d4c52674334","group_id":"e2a3bdf0046a0aea57260d8731231c4a3c6847ef5c1967d829115d4c52674334","id":"INTERVALS-0009885","index":9885,"input":{"contigs":{"synthetic_A":1250,"synthetic_B":1110},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":304,"start":289,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":380,"start":340,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":892,"start":790,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":327,"start":226,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":844,"start":732,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":613,"start":603,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":306,"start":242,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":153,"start":76,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":130,"start":126,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":340,"start":305,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":79},{"feature_index":1,"overlap_bases":77},{"feature_index":4,"overlap_bases":1},{"feature_index":7,"overlap_bases":48}],"query_bed":[259,338],"query_length":79,"union_overlap_bases":79},"family":"nested","fingerprint":"889537624452bd00a6aa009fb0ec1aa3e675fd2f470cf119a4e7c8088a291180","group_id":"889537624452bd00a6aa009fb0ec1aa3e675fd2f470cf119a4e7c8088a291180","id":"INTERVALS-0009886","index":9886,"input":{"contigs":{"synthetic_A":681,"synthetic_B":1666},"features":[{"basis":"one_closed","contig":"synthetic_A","end":343,"start":255,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":337,"start":261,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1246,"start":1202,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1481,"start":1448,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":260,"start":155,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":215,"start":120,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1147,"start":1049,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":318,"start":270,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1242,"start":1242,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":72,"start":46,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":379,"start":341,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":338,"start":260,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":3,"overlap_bases":8}],"query_bed":[145,153],"query_length":8,"union_overlap_bases":8},"family":"touching_boundary","fingerprint":"2adb2abe4ac8528f2c5e83ae65b3e3728e82668bf45cd2f3905420b1acbacff7","group_id":"2adb2abe4ac8528f2c5e83ae65b3e3728e82668bf45cd2f3905420b1acbacff7","id":"INTERVALS-0009915","index":9915,"input":{"contigs":{"synthetic_A":725,"synthetic_B":1783},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":145,"start":133,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":155,"start":153,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":610,"start":598,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":176,"start":144,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":776,"start":695,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":349,"start":313,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1468,"start":1388,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":376,"start":338,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":511,"start":458,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":153,"start":145,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18},{"feature_index":9,"overlap_bases":7}],"query_bed":[1018,1036],"query_length":18,"union_overlap_bases":18},"family":"coordinate_conversion","fingerprint":"5de046c43004464576675c7080f87514e937c47c1c41146ea30cf22a3de6f8a8","group_id":"5de046c43004464576675c7080f87514e937c47c1c41146ea30cf22a3de6f8a8","id":"INTERVALS-0009919","index":9919,"input":{"contigs":{"synthetic_A":983,"synthetic_B":1587},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1036,"start":1019,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":528,"start":503,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":201,"start":92,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1204,"start":1114,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":210,"start":128,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":118,"start":115,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":854,"start":779,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":877,"start":796,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":707,"start":703,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1025,"start":991,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1036,"start":1019,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":65}],"query_bed":[281,346],"query_length":65,"union_overlap_bases":65},"family":"stranded","fingerprint":"40645144c395aa12959b3ce07f24900d43a4979e944d85d644c0788e72dbc62c","group_id":"40645144c395aa12959b3ce07f24900d43a4979e944d85d644c0788e72dbc62c","id":"INTERVALS-0009923","index":9923,"input":{"contigs":{"synthetic_A":1717,"synthetic_B":904},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":346,"start":281,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":346,"start":282,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":699,"start":688,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":673,"start":622,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":798,"start":701,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":346,"start":282,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[486,497],"query_length":11,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"923c97604c64b2cfb4f12923ae978a3ec3bd4fc98762df9a0810eb91f52041c8","group_id":"923c97604c64b2cfb4f12923ae978a3ec3bd4fc98762df9a0810eb91f52041c8","id":"INTERVALS-0009930","index":9930,"input":{"contigs":{"synthetic_A":807,"synthetic_B":954},"features":[{"basis":"one_closed","contig":"synthetic_B","end":486,"start":484,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":526,"start":497,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":421,"start":359,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":779,"start":700,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":180,"start":82,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":433,"start":431,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":30,"start":5,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":226,"start":182,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":669,"start":662,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":424,"start":384,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":412,"start":381,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":440,"start":431,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":497,"start":487,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":39}],"query_bed":[264,303],"query_length":39,"union_overlap_bases":39},"family":"coordinate_conversion","fingerprint":"398fe5e0327e3656ed638c6b114c710dc7346cb6e3a5f443220ac0667296aabb","group_id":"398fe5e0327e3656ed638c6b114c710dc7346cb6e3a5f443220ac0667296aabb","id":"INTERVALS-0009939","index":9939,"input":{"contigs":{"synthetic_A":1062,"synthetic_B":676},"features":[{"basis":"one_closed","contig":"synthetic_B","end":303,"start":265,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":87,"start":83,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":762,"start":755,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":133,"start":110,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":128,"start":48,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":192,"start":123,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":303,"start":265,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":44},{"feature_index":2,"overlap_bases":2}],"query_bed":[834,879],"query_length":45,"union_overlap_bases":45},"family":"overlapping_blocks","fingerprint":"b081cb0a4a85f38e1eb3d5df38e0a365b1f79292af129ee4416c1ba31059257c","group_id":"b081cb0a4a85f38e1eb3d5df38e0a365b1f79292af129ee4416c1ba31059257c","id":"INTERVALS-0009962","index":9962,"input":{"contigs":{"synthetic_A":1169,"synthetic_B":1351},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":837,"start":831,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":879,"start":836,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":882,"start":877,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1001,"start":964,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1074,"start":1063,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":487,"start":419,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":311,"start":221,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":560,"start":477,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":879,"start":834,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":6}],"query_bed":[653,659],"query_length":6,"union_overlap_bases":6},"family":"coordinate_conversion","fingerprint":"c47544e892cfe8d38bb618f4c16ddbe13889c30717e613c3cd3b35f64f54f0ef","group_id":"c47544e892cfe8d38bb618f4c16ddbe13889c30717e613c3cd3b35f64f54f0ef","id":"INTERVALS-0009964","index":9964,"input":{"contigs":{"synthetic_A":1301,"synthetic_B":947},"features":[{"basis":"one_closed","contig":"synthetic_B","end":659,"start":654,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":63,"start":23,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":697,"start":688,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":347,"start":321,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1085,"start":1062,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":771,"start":728,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":722,"start":697,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":978,"start":973,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":437,"start":324,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":710,"start":648,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":232,"start":215,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":811,"start":701,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":659,"start":654,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[529,548],"query_length":19,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"97b862a0f33bad88fe175d0a1051734ab451985ade4f20ae4266fc3e722d337a","group_id":"97b862a0f33bad88fe175d0a1051734ab451985ade4f20ae4266fc3e722d337a","id":"INTERVALS-0009975","index":9975,"input":{"contigs":{"synthetic_A":813,"synthetic_B":1098},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":529,"start":509,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":578,"start":548,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":697,"start":665,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":686,"start":639,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":571,"start":556,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":433,"start":397,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":487,"start":472,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":796,"start":757,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":241,"start":140,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":548,"start":530,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":19}],"query_bed":[527,546],"query_length":19,"union_overlap_bases":19},"family":"stranded","fingerprint":"530da07a2618223a7a19b9df0f2c43701e4311fd2a1ff5a1f07e0c42c6865b1d","group_id":"530da07a2618223a7a19b9df0f2c43701e4311fd2a1ff5a1f07e0c42c6865b1d","id":"INTERVALS-0009993","index":9993,"input":{"contigs":{"synthetic_A":1116,"synthetic_B":730},"features":[{"basis":"one_closed","contig":"synthetic_B","end":546,"start":528,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":546,"start":527,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":221,"start":142,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":507,"start":446,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":433,"start":315,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":254,"start":140,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":312,"start":293,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":410,"start":363,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":525,"start":509,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":602,"start":552,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":766,"start":702,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":134,"start":21,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":546,"start":528,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":56},{"feature_index":2,"overlap_bases":2}],"query_bed":[62,119],"query_length":57,"union_overlap_bases":57},"family":"overlapping_blocks","fingerprint":"632de5321020275c88ee955361972f55e79e66ab4e8524687a364b21de6a4c74","group_id":"632de5321020275c88ee955361972f55e79e66ab4e8524687a364b21de6a4c74","id":"INTERVALS-0010012","index":10012,"input":{"contigs":{"synthetic_A":1239,"synthetic_B":1249},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":65,"start":59,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":119,"start":64,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":122,"start":118,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1059,"start":961,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":858,"start":776,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1070,"start":969,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":386,"start":334,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":841,"start":785,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":134,"start":36,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":578,"start":481,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":608,"start":530,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":119,"start":62,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":74},{"feature_index":3,"overlap_bases":65}],"query_bed":[233,307],"query_length":74,"union_overlap_bases":74},"family":"coordinate_conversion","fingerprint":"89dc0bbe2234292055bfd9a7c576f1ad0035260c938c199470e7abc5c1781ca0","group_id":"89dc0bbe2234292055bfd9a7c576f1ad0035260c938c199470e7abc5c1781ca0","id":"INTERVALS-0010014","index":10014,"input":{"contigs":{"synthetic_A":678,"synthetic_B":889},"features":[{"basis":"one_closed","contig":"synthetic_A","end":307,"start":234,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":739,"start":639,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":395,"start":308,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":298,"start":223,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":465,"start":441,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":437,"start":381,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":612,"start":599,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":434,"start":386,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":307,"start":234,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":80},{"feature_index":1,"overlap_bases":78},{"feature_index":3,"overlap_bases":71}],"query_bed":[655,735],"query_length":80,"union_overlap_bases":80},"family":"nested","fingerprint":"8b95231ecd134fb0f023b9e6d801b2d0f7078ec93d8ef81f5dd72878a56d2a0c","group_id":"8b95231ecd134fb0f023b9e6d801b2d0f7078ec93d8ef81f5dd72878a56d2a0c","id":"INTERVALS-0010026","index":10026,"input":{"contigs":{"synthetic_A":938,"synthetic_B":1282},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":740,"start":650,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":734,"start":656,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":414,"start":309,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":726,"start":635,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":406,"start":332,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":743,"start":703,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1112,"start":1085,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1242,"start":1155,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":900,"start":810,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":735,"start":656,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":9}],"query_bed":[839,848],"query_length":9,"union_overlap_bases":9},"family":"stranded","fingerprint":"b10856b6e314b60cf946378248d4b4b2738458d7ba33084a5d80ae4bb2189757","group_id":"b10856b6e314b60cf946378248d4b4b2738458d7ba33084a5d80ae4bb2189757","id":"INTERVALS-0010028","index":10028,"input":{"contigs":{"synthetic_A":1711,"synthetic_B":1668},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":848,"start":839,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":848,"start":839,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":772,"start":745,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1188,"start":1114,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":624,"start":504,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":956,"start":848,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":297,"start":208,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1605,"start":1492,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1413,"start":1405,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1505,"start":1495,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":768,"start":733,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1483,"start":1475,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":848,"start":839,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":49}],"query_bed":[352,401],"query_length":49,"union_overlap_bases":49},"family":"stranded","fingerprint":"70ca33e49fed8341ea6650e42586e51fd825794fd3bac351f70e46968f855809","group_id":"70ca33e49fed8341ea6650e42586e51fd825794fd3bac351f70e46968f855809","id":"INTERVALS-0010033","index":10033,"input":{"contigs":{"synthetic_A":1067,"synthetic_B":1270},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":401,"start":352,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":401,"start":352,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":509,"start":501,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":257,"start":214,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":544,"start":499,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":597,"start":590,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":566,"start":478,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":401,"start":353,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":73}],"query_bed":[602,675],"query_length":73,"union_overlap_bases":73},"family":"stranded","fingerprint":"ae7e341a138f26ee8353ea0fdf899e339d53b6081e87b891f42374274f6696f2","group_id":"ae7e341a138f26ee8353ea0fdf899e339d53b6081e87b891f42374274f6696f2","id":"INTERVALS-0010038","index":10038,"input":{"contigs":{"synthetic_A":811,"synthetic_B":1744},"features":[{"basis":"one_closed","contig":"synthetic_A","end":675,"start":603,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":675,"start":603,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":119,"start":6,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":425,"start":374,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":586,"start":473,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":291,"start":196,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":166,"start":63,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1137,"start":1081,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":542,"start":457,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1196,"start":1196,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":675,"start":602,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":10},{"feature_index":2,"overlap_bases":2}],"query_bed":[590,601],"query_length":11,"union_overlap_bases":11},"family":"overlapping_blocks","fingerprint":"4b625e1a6f12f42ee4dc75c4fc56a01582f969a7fba91d99a952e1dd4d55d1d6","group_id":"4b625e1a6f12f42ee4dc75c4fc56a01582f969a7fba91d99a952e1dd4d55d1d6","id":"INTERVALS-0010042","index":10042,"input":{"contigs":{"synthetic_A":1519,"synthetic_B":1560},"features":[{"basis":"one_closed","contig":"synthetic_A","end":593,"start":588,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":601,"start":592,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":604,"start":599,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1250,"start":1158,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1202,"start":1119,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":190,"start":121,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1080,"start":973,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":909,"start":873,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1382,"start":1365,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1415,"start":1326,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":601,"start":591,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":64},{"feature_index":2,"overlap_bases":2}],"query_bed":[599,664],"query_length":65,"union_overlap_bases":65},"family":"overlapping_blocks","fingerprint":"e3e73606622ab7e54384ca4e1f8608af27a5d18c05344965ccd05baf4d4479cd","group_id":"e3e73606622ab7e54384ca4e1f8608af27a5d18c05344965ccd05baf4d4479cd","id":"INTERVALS-0010047","index":10047,"input":{"contigs":{"synthetic_A":915,"synthetic_B":1104},"features":[{"basis":"one_closed","contig":"synthetic_A","end":602,"start":597,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":664,"start":601,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":667,"start":663,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":435,"start":342,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":304,"start":291,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":628,"start":537,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":783,"start":676,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":40,"start":36,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":254,"start":176,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":392,"start":332,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":664,"start":599,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":45},{"feature_index":2,"overlap_bases":2}],"query_bed":[25,71],"query_length":46,"union_overlap_bases":46},"family":"overlapping_blocks","fingerprint":"c1ace36aa0fd111af7666820fc4d25905106155788345ae6a240eee43b18adf7","group_id":"c1ace36aa0fd111af7666820fc4d25905106155788345ae6a240eee43b18adf7","id":"INTERVALS-0010077","index":10077,"input":{"contigs":{"synthetic_A":1325,"synthetic_B":1061},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":28,"start":22,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":71,"start":27,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":74,"start":70,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":266,"start":213,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":963,"start":960,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":81,"start":64,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1290,"start":1197,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":383,"start":304,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":71,"start":26,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":42}],"query_bed":[180,222],"query_length":42,"union_overlap_bases":42},"family":"stranded","fingerprint":"be5e842a6c101ca0bc8f7db9061755f2ea62817fe1f9cc110635e807502f1481","group_id":"be5e842a6c101ca0bc8f7db9061755f2ea62817fe1f9cc110635e807502f1481","id":"INTERVALS-0010078","index":10078,"input":{"contigs":{"synthetic_A":640,"synthetic_B":1671},"features":[{"basis":"one_closed","contig":"synthetic_A","end":222,"start":181,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":222,"start":181,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":550,"start":474,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":169,"start":155,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":76,"start":31,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":831,"start":729,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":328,"start":277,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":222,"start":180,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":67},{"feature_index":2,"overlap_bases":2}],"query_bed":[504,572],"query_length":68,"union_overlap_bases":68},"family":"overlapping_blocks","fingerprint":"63e24dce9f9af5b21e8f8b3490eaf29a369f81fecc8d7ace3edb7502a02314ca","group_id":"63e24dce9f9af5b21e8f8b3490eaf29a369f81fecc8d7ace3edb7502a02314ca","id":"INTERVALS-0010082","index":10082,"input":{"contigs":{"synthetic_A":1770,"synthetic_B":1742},"features":[{"basis":"one_closed","contig":"synthetic_A","end":507,"start":502,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":572,"start":505,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":575,"start":571,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":982,"start":913,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1138,"start":1057,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1053,"start":1043,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":596,"start":592,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1541,"start":1448,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":572,"start":505,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[361,369],"query_length":8,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"d5cf4db0cd0b475d42a5227f3513ff0485c9788f444a8486b4c6c19918e665d3","group_id":"d5cf4db0cd0b475d42a5227f3513ff0485c9788f444a8486b4c6c19918e665d3","id":"INTERVALS-0010090","index":10090,"input":{"contigs":{"synthetic_A":1800,"synthetic_B":617},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":361,"start":350,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":388,"start":369,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":283,"start":259,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1649,"start":1549,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1453,"start":1452,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":369,"start":361,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":59},{"feature_index":4,"overlap_bases":38}],"query_bed":[392,451],"query_length":59,"union_overlap_bases":59},"family":"coordinate_conversion","fingerprint":"bfc8d0d6aeb9ab480b9ac6eb2ad8dbe39c0098c1f3840f525075434c606f0efe","group_id":"bfc8d0d6aeb9ab480b9ac6eb2ad8dbe39c0098c1f3840f525075434c606f0efe","id":"INTERVALS-0010094","index":10094,"input":{"contigs":{"synthetic_A":1349,"synthetic_B":835},"features":[{"basis":"one_closed","contig":"synthetic_A","end":451,"start":393,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1046,"start":1036,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":313,"start":274,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":226,"start":121,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":494,"start":414,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":451,"start":393,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[824,830],"query_length":6,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"98dd79f47d95b0f46fe7958442104e213ee889b107c67acf8280da6561403ea9","group_id":"98dd79f47d95b0f46fe7958442104e213ee889b107c67acf8280da6561403ea9","id":"INTERVALS-0010100","index":10100,"input":{"contigs":{"synthetic_A":1728,"synthetic_B":1099},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":824,"start":823,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":840,"start":830,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":290,"start":198,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":928,"start":850,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":766,"start":675,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":987,"start":876,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":269,"start":199,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":830,"start":825,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":53},{"feature_index":2,"overlap_bases":2},{"feature_index":5,"overlap_bases":2}],"query_bed":[87,141],"query_length":54,"union_overlap_bases":54},"family":"overlapping_blocks","fingerprint":"3acf9ac24d28883c6702a4b1cf653540900b88d8e1864a8ff363cfa4fb442512","group_id":"3acf9ac24d28883c6702a4b1cf653540900b88d8e1864a8ff363cfa4fb442512","id":"INTERVALS-0010112","index":10112,"input":{"contigs":{"synthetic_A":1304,"synthetic_B":1520},"features":[{"basis":"one_closed","contig":"synthetic_A","end":90,"start":85,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":141,"start":89,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":144,"start":139,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1134,"start":1056,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":696,"start":602,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":243,"start":140,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1058,"start":947,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":550,"start":476,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":517,"start":469,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":961,"start":946,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1195,"start":1137,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":837,"start":822,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":141,"start":87,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":20}],"query_bed":[491,511],"query_length":20,"union_overlap_bases":20},"family":"coordinate_conversion","fingerprint":"e79fb93afd60252688917aed31410038f8e2b150f2b5ef58559eea02f22aaaa4","group_id":"e79fb93afd60252688917aed31410038f8e2b150f2b5ef58559eea02f22aaaa4","id":"INTERVALS-0010114","index":10114,"input":{"contigs":{"synthetic_A":1562,"synthetic_B":877},"features":[{"basis":"one_closed","contig":"synthetic_B","end":511,"start":492,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":322,"start":252,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1088,"start":1019,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":282,"start":267,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":105,"start":13,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":322,"start":265,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":198,"start":182,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1106,"start":1007,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":717,"start":628,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":422,"start":375,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":511,"start":492,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":74},{"feature_index":6,"overlap_bases":48}],"query_bed":[800,874],"query_length":74,"union_overlap_bases":74},"family":"stranded","fingerprint":"92fea1fc84859647ff46ab640dfa91c091c81bccd1390c986775409d90796d29","group_id":"92fea1fc84859647ff46ab640dfa91c091c81bccd1390c986775409d90796d29","id":"INTERVALS-0010123","index":10123,"input":{"contigs":{"synthetic_A":1788,"synthetic_B":1562},"features":[{"basis":"one_closed","contig":"synthetic_B","end":874,"start":801,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":874,"start":800,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1678,"start":1605,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1084,"start":966,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":347,"start":290,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1192,"start":1191,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":848,"start":741,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1126,"start":1062,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1203,"start":1188,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1349,"start":1250,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":874,"start":801,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":15}],"query_bed":[580,595],"query_length":15,"union_overlap_bases":15},"family":"stranded","fingerprint":"b4574002dda7b32e80da18f13ad634d60b45759bdc4de6cf17019c1ef2a4b886","group_id":"b4574002dda7b32e80da18f13ad634d60b45759bdc4de6cf17019c1ef2a4b886","id":"INTERVALS-0010133","index":10133,"input":{"contigs":{"synthetic_A":882,"synthetic_B":1784},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":595,"start":580,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":595,"start":580,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":751,"start":643,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":541,"start":480,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":702,"start":612,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":145,"start":93,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":595,"start":580,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":80},{"feature_index":1,"overlap_bases":78}],"query_bed":[81,161],"query_length":80,"union_overlap_bases":80},"family":"nested","fingerprint":"9243616c2c696f8e0a10cdf932dfa1580509894fcca0c6358dd66cb657df8277","group_id":"9243616c2c696f8e0a10cdf932dfa1580509894fcca0c6358dd66cb657df8277","id":"INTERVALS-0010136","index":10136,"input":{"contigs":{"synthetic_A":784,"synthetic_B":772},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":166,"start":76,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":160,"start":83,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":658,"start":611,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":414,"start":375,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":490,"start":435,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":194,"start":167,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":161,"start":81,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":73}],"query_bed":[1116,1189],"query_length":73,"union_overlap_bases":73},"family":"stranded","fingerprint":"90c2346c123760398e47564979ff4152c65e5b8e1266d6d23f1f5a38fd888875","group_id":"90c2346c123760398e47564979ff4152c65e5b8e1266d6d23f1f5a38fd888875","id":"INTERVALS-0010158","index":10158,"input":{"contigs":{"synthetic_A":1022,"synthetic_B":1494},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1189,"start":1117,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1189,"start":1117,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1351,"start":1236,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":946,"start":857,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":611,"start":604,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":64,"start":28,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1041,"start":972,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1189,"start":1116,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":62},{"feature_index":5,"overlap_bases":12}],"query_bed":[107,169],"query_length":62,"union_overlap_bases":62},"family":"coordinate_conversion","fingerprint":"e8c6792044bcf172af8341dcfb6958f60a259ffdd6f3c352d40901aeef062494","group_id":"e8c6792044bcf172af8341dcfb6958f60a259ffdd6f3c352d40901aeef062494","id":"INTERVALS-0010174","index":10174,"input":{"contigs":{"synthetic_A":639,"synthetic_B":1237},"features":[{"basis":"one_closed","contig":"synthetic_A","end":169,"start":108,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":327,"start":208,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":244,"start":183,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":84,"start":80,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":918,"start":849,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":200,"start":158,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":269,"start":231,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1004,"start":923,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":603,"start":511,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":605,"start":499,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":283,"start":226,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":169,"start":108,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[716,765],"query_length":49,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"ec41692a51cc6f262c043526732f8c4bfb868e5953ff8eb12179d8c81ba8eb79","group_id":"ec41692a51cc6f262c043526732f8c4bfb868e5953ff8eb12179d8c81ba8eb79","id":"INTERVALS-0010175","index":10175,"input":{"contigs":{"synthetic_A":1693,"synthetic_B":923},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":716,"start":715,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":789,"start":766,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":175,"start":118,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":412,"start":354,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1482,"start":1428,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1421,"start":1328,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":760,"start":746,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1444,"start":1426,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":717,"start":616,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":84,"start":6,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":497,"start":479,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":626,"start":538,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":765,"start":717,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[668,687],"query_length":19,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"df43d03c6a6a9a8bd181c706a535b9332bbec39df3f0d83f98e3426a8abf531d","group_id":"df43d03c6a6a9a8bd181c706a535b9332bbec39df3f0d83f98e3426a8abf531d","id":"INTERVALS-0010210","index":10210,"input":{"contigs":{"synthetic_A":1040,"synthetic_B":968},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":668,"start":664,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":699,"start":688,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":566,"start":506,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":568,"start":470,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":288,"start":269,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":329,"start":287,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":120,"start":46,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":117,"start":45,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":262,"start":192,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":687,"start":668,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":68}],"query_bed":[226,294],"query_length":68,"union_overlap_bases":68},"family":"stranded","fingerprint":"f9f2e044c339797847eb6be0ce154037064a7c67e91696bf28b4cf2b8df81ea4","group_id":"f9f2e044c339797847eb6be0ce154037064a7c67e91696bf28b4cf2b8df81ea4","id":"INTERVALS-0010213","index":10213,"input":{"contigs":{"synthetic_A":1168,"synthetic_B":836},"features":[{"basis":"one_closed","contig":"synthetic_A","end":294,"start":227,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":294,"start":226,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":429,"start":332,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":693,"start":691,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":502,"start":395,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":294,"start":226,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":25}],"query_bed":[245,270],"query_length":25,"union_overlap_bases":25},"family":"stranded","fingerprint":"514600ca391535db69fed3708ea0ca8e0e5e593db2e1e043d08260e85415d60e","group_id":"514600ca391535db69fed3708ea0ca8e0e5e593db2e1e043d08260e85415d60e","id":"INTERVALS-0010218","index":10218,"input":{"contigs":{"synthetic_A":624,"synthetic_B":1626},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":270,"start":245,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":270,"start":246,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":352,"start":292,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":192,"start":86,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":970,"start":969,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1338,"start":1243,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":175,"start":148,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1516,"start":1467,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":270,"start":245,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":76},{"feature_index":5,"overlap_bases":41}],"query_bed":[49,125],"query_length":76,"union_overlap_bases":76},"family":"coordinate_conversion","fingerprint":"86f1be949ec66cb75b9dd35df000e20d1374fbeb351e222a5b5bc64522a3ac48","group_id":"86f1be949ec66cb75b9dd35df000e20d1374fbeb351e222a5b5bc64522a3ac48","id":"INTERVALS-0010219","index":10219,"input":{"contigs":{"synthetic_A":666,"synthetic_B":928},"features":[{"basis":"one_closed","contig":"synthetic_B","end":125,"start":50,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":239,"start":205,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":555,"start":499,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":537,"start":442,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":285,"start":231,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":90,"start":39,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":342,"start":296,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":289,"start":191,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":341,"start":275,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":427,"start":324,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":574,"start":533,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":125,"start":50,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":2,"overlap_bases":34}],"query_bed":[487,521],"query_length":34,"union_overlap_bases":34},"family":"touching_boundary","fingerprint":"a584876aa66714e0d7323e97024ab34991ebe3030903e1897fddf70de1111678","group_id":"a584876aa66714e0d7323e97024ab34991ebe3030903e1897fddf70de1111678","id":"INTERVALS-0010235","index":10235,"input":{"contigs":{"synthetic_A":1002,"synthetic_B":958},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":487,"start":472,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":523,"start":522,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":524,"start":421,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":615,"start":526,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":222,"start":158,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":521,"start":488,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":10}],"query_bed":[233,243],"query_length":10,"union_overlap_bases":10},"family":"stranded","fingerprint":"b084a6eaf3384d1b0776a3e53e144cb12a9d79b7b65d29a6cbc5a7679a6f16ef","group_id":"b084a6eaf3384d1b0776a3e53e144cb12a9d79b7b65d29a6cbc5a7679a6f16ef","id":"INTERVALS-0010238","index":10238,"input":{"contigs":{"synthetic_A":1314,"synthetic_B":1338},"features":[{"basis":"one_closed","contig":"synthetic_B","end":243,"start":234,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":243,"start":233,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":299,"start":298,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":756,"start":742,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":497,"start":407,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":710,"start":644,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1093,"start":1020,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":124,"start":26,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1090,"start":1058,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1132,"start":1040,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":781,"start":679,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":767,"start":697,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":243,"start":234,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":42},{"feature_index":9,"overlap_bases":17}],"query_bed":[59,101],"query_length":42,"union_overlap_bases":42},"family":"coordinate_conversion","fingerprint":"605c65e0d3cec0176d7fac724dc09d04289839e4f84c430ec26abeae2be96f57","group_id":"605c65e0d3cec0176d7fac724dc09d04289839e4f84c430ec26abeae2be96f57","id":"INTERVALS-0010239","index":10239,"input":{"contigs":{"synthetic_A":617,"synthetic_B":861},"features":[{"basis":"one_closed","contig":"synthetic_A","end":101,"start":60,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":80,"start":57,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":285,"start":183,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":760,"start":714,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":732,"start":669,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":399,"start":365,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":183,"start":161,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":268,"start":163,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":180,"start":135,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":76,"start":45,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":605,"start":489,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":94,"start":2,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":101,"start":60,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":29},{"feature_index":2,"overlap_bases":2}],"query_bed":[132,162],"query_length":30,"union_overlap_bases":30},"family":"overlapping_blocks","fingerprint":"326b5970de214d8a3753c64c20f637adfed89d9160074dac462237f2dd566811","group_id":"326b5970de214d8a3753c64c20f637adfed89d9160074dac462237f2dd566811","id":"INTERVALS-0010242","index":10242,"input":{"contigs":{"synthetic_A":1656,"synthetic_B":1200},"features":[{"basis":"one_closed","contig":"synthetic_B","end":135,"start":130,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":162,"start":133,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":165,"start":161,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":824,"start":752,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":806,"start":803,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1046,"start":991,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":205,"start":189,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1333,"start":1234,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1095,"start":1035,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":162,"start":133,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":47}],"query_bed":[939,986],"query_length":47,"union_overlap_bases":47},"family":"stranded","fingerprint":"eacc4c3691e6590b960a8eceae2af66026850c3bfa700afa35b480add03e02f2","group_id":"eacc4c3691e6590b960a8eceae2af66026850c3bfa700afa35b480add03e02f2","id":"INTERVALS-0010248","index":10248,"input":{"contigs":{"synthetic_A":1692,"synthetic_B":1632},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":986,"start":939,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":986,"start":939,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1378,"start":1325,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1147,"start":1050,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":899,"start":786,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1412,"start":1302,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":97,"start":21,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":986,"start":939,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":47}],"query_bed":[126,173],"query_length":47,"union_overlap_bases":47},"family":"coordinate_conversion","fingerprint":"e2fd83e4bdf9686fb59cbb361634055f18b5256d6d6c09518c979a7b376f6d5e","group_id":"e2fd83e4bdf9686fb59cbb361634055f18b5256d6d6c09518c979a7b376f6d5e","id":"INTERVALS-0010249","index":10249,"input":{"contigs":{"synthetic_A":838,"synthetic_B":1190},"features":[{"basis":"one_closed","contig":"synthetic_A","end":173,"start":127,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":342,"start":264,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":94,"start":11,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":493,"start":397,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":628,"start":572,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":554,"start":484,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":722,"start":683,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":650,"start":536,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":996,"start":904,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":403,"start":299,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":174,"start":125,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":673,"start":613,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":173,"start":127,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":47},{"feature_index":1,"overlap_bases":45}],"query_bed":[669,716],"query_length":47,"union_overlap_bases":47},"family":"nested","fingerprint":"4ed05e584f39f4ab91df7d91db65714361f45d1d204107f91850e3bed56b4ee3","group_id":"4ed05e584f39f4ab91df7d91db65714361f45d1d204107f91850e3bed56b4ee3","id":"INTERVALS-0010251","index":10251,"input":{"contigs":{"synthetic_A":1194,"synthetic_B":703},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":721,"start":664,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":715,"start":671,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":405,"start":391,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":251,"start":235,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":28,"start":14,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":307,"start":201,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":716,"start":670,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":70}],"query_bed":[106,176],"query_length":70,"union_overlap_bases":70},"family":"stranded","fingerprint":"37cec9ba3ba1a4d8e41df881cb235845e70fed266694fd6f6b600c44524b1e5a","group_id":"37cec9ba3ba1a4d8e41df881cb235845e70fed266694fd6f6b600c44524b1e5a","id":"INTERVALS-0010258","index":10258,"input":{"contigs":{"synthetic_A":1009,"synthetic_B":1194},"features":[{"basis":"one_closed","contig":"synthetic_A","end":176,"start":107,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":176,"start":107,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":511,"start":437,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":676,"start":588,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":661,"start":642,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":176,"start":106,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":41}],"query_bed":[352,393],"query_length":41,"union_overlap_bases":41},"family":"coordinate_conversion","fingerprint":"3e0336d6e3c113a5168951d66dca4e227bcd7808281574a751f9b8a14548d926","group_id":"3e0336d6e3c113a5168951d66dca4e227bcd7808281574a751f9b8a14548d926","id":"INTERVALS-0010259","index":10259,"input":{"contigs":{"synthetic_A":1254,"synthetic_B":1158},"features":[{"basis":"one_closed","contig":"synthetic_B","end":393,"start":353,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":153,"start":136,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":732,"start":624,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":758,"start":698,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1051,"start":951,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":971,"start":909,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":793,"start":754,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":837,"start":785,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":790,"start":692,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":923,"start":857,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":246,"start":166,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":932,"start":817,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":393,"start":353,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":25},{"feature_index":2,"overlap_bases":2}],"query_bed":[352,378],"query_length":26,"union_overlap_bases":26},"family":"overlapping_blocks","fingerprint":"b4987e8cebc870c8d355726de1321d977d8caa525a391cb3ce4f8dbc59df110e","group_id":"b4987e8cebc870c8d355726de1321d977d8caa525a391cb3ce4f8dbc59df110e","id":"INTERVALS-0010272","index":10272,"input":{"contigs":{"synthetic_A":960,"synthetic_B":1636},"features":[{"basis":"one_closed","contig":"synthetic_B","end":355,"start":350,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":378,"start":354,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":381,"start":377,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":166,"start":46,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":370,"start":309,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":823,"start":775,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":349,"start":334,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":378,"start":352,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32}],"query_bed":[194,226],"query_length":32,"union_overlap_bases":32},"family":"coordinate_conversion","fingerprint":"e7bc398e5fb95e9188a91df34cfa074f997806beeee43c90ecb19248a384c26c","group_id":"e7bc398e5fb95e9188a91df34cfa074f997806beeee43c90ecb19248a384c26c","id":"INTERVALS-0010279","index":10279,"input":{"contigs":{"synthetic_A":1663,"synthetic_B":1734},"features":[{"basis":"one_closed","contig":"synthetic_A","end":226,"start":195,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":619,"start":617,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1037,"start":984,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1256,"start":1226,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1317,"start":1236,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":226,"start":195,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":9}],"query_bed":[39,48],"query_length":9,"union_overlap_bases":9},"family":"coordinate_conversion","fingerprint":"e6aaab8446afaddbd339eccffadb7ee727ae1e61db31f8269dbc71c253e40763","group_id":"e6aaab8446afaddbd339eccffadb7ee727ae1e61db31f8269dbc71c253e40763","id":"INTERVALS-0010304","index":10304,"input":{"contigs":{"synthetic_A":917,"synthetic_B":1462},"features":[{"basis":"one_closed","contig":"synthetic_B","end":48,"start":40,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":910,"start":806,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":203,"start":166,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":292,"start":238,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1038,"start":950,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":48,"start":40,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":41},{"feature_index":2,"overlap_bases":2}],"query_bed":[764,806],"query_length":42,"union_overlap_bases":42},"family":"overlapping_blocks","fingerprint":"ad29ca84596211d72888f84d25ca0bb5b99484d428fb3380d9043025f3ef05c8","group_id":"ad29ca84596211d72888f84d25ca0bb5b99484d428fb3380d9043025f3ef05c8","id":"INTERVALS-0010312","index":10312,"input":{"contigs":{"synthetic_A":981,"synthetic_B":1573},"features":[{"basis":"one_closed","contig":"synthetic_A","end":767,"start":762,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":806,"start":766,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":809,"start":805,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":203,"start":136,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":165,"start":127,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":476,"start":427,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1340,"start":1226,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":821,"start":781,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":806,"start":764,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":31}],"query_bed":[484,515],"query_length":31,"union_overlap_bases":31},"family":"coordinate_conversion","fingerprint":"7db972fe970268a8a158cc054a0a4d1a55a6fed78b6a84d979eef61c679262dc","group_id":"7db972fe970268a8a158cc054a0a4d1a55a6fed78b6a84d979eef61c679262dc","id":"INTERVALS-0010319","index":10319,"input":{"contigs":{"synthetic_A":1457,"synthetic_B":1286},"features":[{"basis":"one_closed","contig":"synthetic_B","end":515,"start":485,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":341,"start":312,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1051,"start":945,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":879,"start":864,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":282,"start":207,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":176,"start":126,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1019,"start":945,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":635,"start":579,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":584,"start":510,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1128,"start":1043,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1164,"start":1144,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":515,"start":485,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[714,728],"query_length":14,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"22bb4148a5d829111c55398290d6cd8d86396504fa05d3d848e4824a85832328","group_id":"22bb4148a5d829111c55398290d6cd8d86396504fa05d3d848e4824a85832328","id":"INTERVALS-0010320","index":10320,"input":{"contigs":{"synthetic_A":1616,"synthetic_B":1525},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":714,"start":702,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":730,"start":729,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1072,"start":969,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":940,"start":858,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":880,"start":811,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":968,"start":903,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":745,"start":673,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1088,"start":1042,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":283,"start":249,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1350,"start":1286,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":728,"start":714,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":49}],"query_bed":[86,135],"query_length":49,"union_overlap_bases":49},"family":"stranded","fingerprint":"4d65a28a26bab6456e989df227ec81c3b68596ae9ce9458d04b645f6531aa5a7","group_id":"4d65a28a26bab6456e989df227ec81c3b68596ae9ce9458d04b645f6531aa5a7","id":"INTERVALS-0010328","index":10328,"input":{"contigs":{"synthetic_A":1577,"synthetic_B":869},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":135,"start":86,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":135,"start":87,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1025,"start":911,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1190,"start":1100,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":58,"start":1,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":824,"start":726,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1315,"start":1209,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":321,"start":313,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":582,"start":508,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":40,"start":26,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":852,"start":733,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1155,"start":1108,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":135,"start":86,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56},{"feature_index":1,"overlap_bases":54}],"query_bed":[576,632],"query_length":56,"union_overlap_bases":56},"family":"nested","fingerprint":"98b330c22a6c7f30c7844c86a1aadb7aabfebd0f992f5d76b04a383638e0e8f4","group_id":"98b330c22a6c7f30c7844c86a1aadb7aabfebd0f992f5d76b04a383638e0e8f4","id":"INTERVALS-0010376","index":10376,"input":{"contigs":{"synthetic_A":1170,"synthetic_B":1188},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":637,"start":571,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":631,"start":577,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1021,"start":916,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":882,"start":849,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":781,"start":769,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1121,"start":1032,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1068,"start":1005,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":539,"start":426,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":274,"start":160,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":102,"start":43,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":632,"start":576,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":5,"overlap_bases":16},{"feature_index":6,"overlap_bases":31}],"query_bed":[78,132],"query_length":54,"union_overlap_bases":47},"family":"touching_boundary","fingerprint":"3996317a6a0ab499f902e056afd11e8ddc7b5cea416d2ed4246a71478e868439","group_id":"3996317a6a0ab499f902e056afd11e8ddc7b5cea416d2ed4246a71478e868439","id":"INTERVALS-0010385","index":10385,"input":{"contigs":{"synthetic_A":991,"synthetic_B":1204},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":78,"start":69,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":133,"start":133,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":323,"start":244,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":826,"start":732,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":467,"start":440,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":163,"start":116,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":109,"start":46,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":399,"start":284,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":205,"start":176,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":338,"start":294,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":307,"start":274,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":577,"start":461,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":132,"start":78,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":19},{"feature_index":2,"overlap_bases":2}],"query_bed":[940,960],"query_length":20,"union_overlap_bases":20},"family":"overlapping_blocks","fingerprint":"f313e78cc7060e6046af2eb9455f0b4f08349cc890baaa66aab5a03e02f29f54","group_id":"f313e78cc7060e6046af2eb9455f0b4f08349cc890baaa66aab5a03e02f29f54","id":"INTERVALS-0010397","index":10397,"input":{"contigs":{"synthetic_A":953,"synthetic_B":1345},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":943,"start":937,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":960,"start":942,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":963,"start":958,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":94,"start":22,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":412,"start":323,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1088,"start":1013,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":960,"start":940,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":41},{"feature_index":1,"overlap_bases":39},{"feature_index":5,"overlap_bases":11}],"query_bed":[353,394],"query_length":41,"union_overlap_bases":41},"family":"nested","fingerprint":"a07d86feeeadd815112a954b4116dfe45971518f2a44e4efcb1e799a5d34aff4","group_id":"a07d86feeeadd815112a954b4116dfe45971518f2a44e4efcb1e799a5d34aff4","id":"INTERVALS-0010421","index":10421,"input":{"contigs":{"synthetic_A":1550,"synthetic_B":894},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":399,"start":348,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":393,"start":354,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":762,"start":695,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":130,"start":52,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":699,"start":662,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":364,"start":328,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":940,"start":843,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":624,"start":528,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":829,"start":775,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":394,"start":354,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":53},{"feature_index":2,"overlap_bases":2}],"query_bed":[244,298],"query_length":54,"union_overlap_bases":54},"family":"overlapping_blocks","fingerprint":"f299510c51c3c87238e631aab1ca3663d4362afcd9df70eb8617878201f9af15","group_id":"f299510c51c3c87238e631aab1ca3663d4362afcd9df70eb8617878201f9af15","id":"INTERVALS-0010422","index":10422,"input":{"contigs":{"synthetic_A":614,"synthetic_B":812},"features":[{"basis":"one_closed","contig":"synthetic_A","end":247,"start":242,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":298,"start":245,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":301,"start":297,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":505,"start":441,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":273,"start":238,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":798,"start":684,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":124,"start":29,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":517,"start":516,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":191,"start":109,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":298,"start":245,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":57}],"query_bed":[1033,1090],"query_length":57,"union_overlap_bases":57},"family":"stranded","fingerprint":"ee3e0de667f7ad7d67b4103a6cb930fe005d576882af394e7baa58850a50dcc7","group_id":"ee3e0de667f7ad7d67b4103a6cb930fe005d576882af394e7baa58850a50dcc7","id":"INTERVALS-0010423","index":10423,"input":{"contigs":{"synthetic_A":1289,"synthetic_B":1104},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1090,"start":1034,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1090,"start":1034,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":524,"start":505,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":890,"start":773,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":284,"start":200,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":378,"start":347,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":602,"start":537,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":44,"start":1,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":449,"start":441,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1090,"start":1034,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":53},{"feature_index":1,"overlap_bases":51}],"query_bed":[466,519],"query_length":53,"union_overlap_bases":53},"family":"nested","fingerprint":"d4577ee4670bcfd04ade16eb4e9e144eb739f82010bf966fda5e25d1dbe9261d","group_id":"d4577ee4670bcfd04ade16eb4e9e144eb739f82010bf966fda5e25d1dbe9261d","id":"INTERVALS-0010436","index":10436,"input":{"contigs":{"synthetic_A":785,"synthetic_B":1696},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":524,"start":461,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":518,"start":467,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":377,"start":316,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":627,"start":617,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":927,"start":908,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1102,"start":1082,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":936,"start":892,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":969,"start":945,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":519,"start":467,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":5,"overlap_bases":18}],"query_bed":[819,858],"query_length":39,"union_overlap_bases":18},"family":"touching_boundary","fingerprint":"bb629c48e19020d3f1c1366eb872dbaafa80d7c2866326fa71125f7a01dee971","group_id":"bb629c48e19020d3f1c1366eb872dbaafa80d7c2866326fa71125f7a01dee971","id":"INTERVALS-0010445","index":10445,"input":{"contigs":{"synthetic_A":713,"synthetic_B":1066},"features":[{"basis":"one_closed","contig":"synthetic_B","end":819,"start":813,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":890,"start":859,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":397,"start":332,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":387,"start":321,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":157,"start":153,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":869,"start":841,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":165,"start":138,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":152,"start":75,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":286,"start":266,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1019,"start":924,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":404,"start":384,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":858,"start":820,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[868,911],"query_length":43,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"b5e669f287fe81bcb81d46da38ffdc14ca1c1af7f4188839aa7db5465f96b39a","group_id":"b5e669f287fe81bcb81d46da38ffdc14ca1c1af7f4188839aa7db5465f96b39a","id":"INTERVALS-0010470","index":10470,"input":{"contigs":{"synthetic_A":1661,"synthetic_B":1605},"features":[{"basis":"one_closed","contig":"synthetic_B","end":868,"start":864,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":925,"start":911,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":971,"start":954,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":235,"start":146,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":612,"start":552,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1255,"start":1150,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":133,"start":89,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":443,"start":424,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1053,"start":1032,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":911,"start":868,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[484,516],"query_length":32,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"05a5bdd6fe0bac8b5654d35e712c9e8f25c3d0ba38f6a58111f3a2f28ababf7b","group_id":"05a5bdd6fe0bac8b5654d35e712c9e8f25c3d0ba38f6a58111f3a2f28ababf7b","id":"INTERVALS-0010475","index":10475,"input":{"contigs":{"synthetic_A":1608,"synthetic_B":695},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":484,"start":467,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":531,"start":516,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":353,"start":327,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":628,"start":515,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":287,"start":229,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1027,"start":926,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":516,"start":485,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":58},{"feature_index":2,"overlap_bases":2}],"query_bed":[490,549],"query_length":59,"union_overlap_bases":59},"family":"overlapping_blocks","fingerprint":"b5221a5234f606623d4d46f44b745e2a7c9490d2fd417c73a5502e33a23647b1","group_id":"b5221a5234f606623d4d46f44b745e2a7c9490d2fd417c73a5502e33a23647b1","id":"INTERVALS-0010482","index":10482,"input":{"contigs":{"synthetic_A":716,"synthetic_B":885},"features":[{"basis":"one_closed","contig":"synthetic_B","end":493,"start":488,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":549,"start":492,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":552,"start":548,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":261,"start":185,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":546,"start":526,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":305,"start":285,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":243,"start":140,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":362,"start":277,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":409,"start":380,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":437,"start":350,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":470,"start":454,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":549,"start":490,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":7}],"query_bed":[888,895],"query_length":7,"union_overlap_bases":7},"family":"coordinate_conversion","fingerprint":"16bdbe66956405f126170b8162e67c8cd30fca9c17e93832b6c636afef62f6f7","group_id":"16bdbe66956405f126170b8162e67c8cd30fca9c17e93832b6c636afef62f6f7","id":"INTERVALS-0010484","index":10484,"input":{"contigs":{"synthetic_A":1465,"synthetic_B":1200},"features":[{"basis":"one_closed","contig":"synthetic_B","end":895,"start":889,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":506,"start":480,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":118,"start":37,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":752,"start":744,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":233,"start":168,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":580,"start":491,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":895,"start":889,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":70},{"feature_index":1,"overlap_bases":68}],"query_bed":[347,417],"query_length":70,"union_overlap_bases":70},"family":"nested","fingerprint":"5a4f2a484ded4d5d770264f17b85e3d7d807ffc899de1d334b4d7e312a731d6f","group_id":"5a4f2a484ded4d5d770264f17b85e3d7d807ffc899de1d334b4d7e312a731d6f","id":"INTERVALS-0010486","index":10486,"input":{"contigs":{"synthetic_A":662,"synthetic_B":1072},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":422,"start":342,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":416,"start":348,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":943,"start":881,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":759,"start":651,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":193,"start":176,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":511,"start":431,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":294,"start":227,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":508,"start":497,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":571,"start":519,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":74,"start":69,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":718,"start":632,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":310,"start":227,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":417,"start":347,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":44},{"feature_index":1,"overlap_bases":42},{"feature_index":9,"overlap_bases":44}],"query_bed":[426,470],"query_length":44,"union_overlap_bases":44},"family":"nested","fingerprint":"1a0bc284338c95c9bc512348eb90ad602b3dd2fcb08c27e068c829e90360a64d","group_id":"1a0bc284338c95c9bc512348eb90ad602b3dd2fcb08c27e068c829e90360a64d","id":"INTERVALS-0010496","index":10496,"input":{"contigs":{"synthetic_A":1719,"synthetic_B":1340},"features":[{"basis":"one_closed","contig":"synthetic_B","end":475,"start":422,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":469,"start":427,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1163,"start":1119,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":271,"start":255,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":878,"start":855,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":216,"start":109,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":625,"start":607,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":225,"start":133,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":535,"start":524,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":511,"start":422,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":260,"start":223,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":470,"start":426,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":48},{"feature_index":2,"overlap_bases":2}],"query_bed":[280,329],"query_length":49,"union_overlap_bases":49},"family":"overlapping_blocks","fingerprint":"25ac978abc433100570a2690ca631289cec47c14bff8f9c4d545e67ac57af790","group_id":"25ac978abc433100570a2690ca631289cec47c14bff8f9c4d545e67ac57af790","id":"INTERVALS-0010497","index":10497,"input":{"contigs":{"synthetic_A":1398,"synthetic_B":846},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":283,"start":277,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":329,"start":281,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":332,"start":328,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":205,"start":166,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":647,"start":547,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":815,"start":811,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":39,"start":17,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":73,"start":70,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":898,"start":803,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":670,"start":558,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":695,"start":673,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":329,"start":281,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":50},{"feature_index":4,"overlap_bases":40}],"query_bed":[178,228],"query_length":50,"union_overlap_bases":50},"family":"stranded","fingerprint":"04fb13b83ebae5018d3c9514da1c1c3f405fa848aa9f1bbd3bcf4e75d3e5f030","group_id":"04fb13b83ebae5018d3c9514da1c1c3f405fa848aa9f1bbd3bcf4e75d3e5f030","id":"INTERVALS-0010498","index":10498,"input":{"contigs":{"synthetic_A":766,"synthetic_B":1085},"features":[{"basis":"one_closed","contig":"synthetic_A","end":228,"start":179,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":228,"start":178,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":406,"start":365,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":495,"start":378,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":218,"start":142,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":670,"start":604,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":228,"start":178,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":74}],"query_bed":[662,736],"query_length":74,"union_overlap_bases":74},"family":"coordinate_conversion","fingerprint":"f1f684c29509a7564ee71411a23641833cccc284daf7c48411214ff87d2b3347","group_id":"f1f684c29509a7564ee71411a23641833cccc284daf7c48411214ff87d2b3347","id":"INTERVALS-0010499","index":10499,"input":{"contigs":{"synthetic_A":1275,"synthetic_B":1474},"features":[{"basis":"one_closed","contig":"synthetic_B","end":736,"start":663,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":310,"start":297,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":255,"start":239,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1255,"start":1145,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":330,"start":281,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":114,"start":2,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":971,"start":940,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1387,"start":1293,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":290,"start":287,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":129,"start":27,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":736,"start":663,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":55},{"feature_index":2,"overlap_bases":2}],"query_bed":[423,479],"query_length":56,"union_overlap_bases":56},"family":"overlapping_blocks","fingerprint":"4c65881ed7baeb7cbeb7c56562a2b0d4f70635af28484f4831dc4371d1a39f80","group_id":"4c65881ed7baeb7cbeb7c56562a2b0d4f70635af28484f4831dc4371d1a39f80","id":"INTERVALS-0010517","index":10517,"input":{"contigs":{"synthetic_A":609,"synthetic_B":1223},"features":[{"basis":"one_closed","contig":"synthetic_B","end":426,"start":421,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":479,"start":425,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":482,"start":478,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":435,"start":421,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":985,"start":920,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":146,"start":98,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":479,"start":423,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":64}],"query_bed":[1011,1075],"query_length":64,"union_overlap_bases":64},"family":"coordinate_conversion","fingerprint":"20f7e2121018138d65ea391fb909dac7acbe6b70b79209fe1286a3c9bf24df17","group_id":"20f7e2121018138d65ea391fb909dac7acbe6b70b79209fe1286a3c9bf24df17","id":"INTERVALS-0010529","index":10529,"input":{"contigs":{"synthetic_A":1739,"synthetic_B":1409},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1075,"start":1012,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":416,"start":394,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":233,"start":139,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":204,"start":103,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":345,"start":294,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1075,"start":1012,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":20}],"query_bed":[291,311],"query_length":20,"union_overlap_bases":20},"family":"stranded","fingerprint":"26c8de8ac2438dbcb7e64a6ad9dec1a3278830d5c13affc44b9e143d8fbc1460","group_id":"26c8de8ac2438dbcb7e64a6ad9dec1a3278830d5c13affc44b9e143d8fbc1460","id":"INTERVALS-0010538","index":10538,"input":{"contigs":{"synthetic_A":976,"synthetic_B":1595},"features":[{"basis":"one_closed","contig":"synthetic_B","end":311,"start":292,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":311,"start":291,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":455,"start":340,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1463,"start":1353,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":504,"start":428,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":807,"start":730,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":466,"start":442,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":736,"start":625,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":535,"start":491,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":412,"start":326,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":155,"start":87,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":311,"start":292,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":39},{"feature_index":1,"overlap_bases":37}],"query_bed":[332,371],"query_length":39,"union_overlap_bases":39},"family":"nested","fingerprint":"e119120af2f67da8a9785e2e6e8e2ecca9735832249a245f104b4c2d0a1b274c","group_id":"e119120af2f67da8a9785e2e6e8e2ecca9735832249a245f104b4c2d0a1b274c","id":"INTERVALS-0010566","index":10566,"input":{"contigs":{"synthetic_A":1400,"synthetic_B":656},"features":[{"basis":"one_closed","contig":"synthetic_B","end":376,"start":328,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":370,"start":334,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":353,"start":334,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":267,"start":198,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":202,"start":146,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":87,"start":41,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":236,"start":155,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":537,"start":513,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":518,"start":504,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":371,"start":333,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":5}],"query_bed":[553,558],"query_length":5,"union_overlap_bases":5},"family":"stranded","fingerprint":"f92958780492f7d05c168034fb4af4ff3e566f4d6143f3bfeae6f2c248d3f611","group_id":"f92958780492f7d05c168034fb4af4ff3e566f4d6143f3bfeae6f2c248d3f611","id":"INTERVALS-0010573","index":10573,"input":{"contigs":{"synthetic_A":1488,"synthetic_B":1624},"features":[{"basis":"one_closed","contig":"synthetic_B","end":558,"start":554,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":558,"start":553,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":129,"start":53,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":281,"start":230,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":838,"start":825,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1354,"start":1247,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1253,"start":1240,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1412,"start":1312,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":558,"start":553,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":33},{"feature_index":1,"overlap_bases":31}],"query_bed":[870,903],"query_length":33,"union_overlap_bases":33},"family":"nested","fingerprint":"11895784787d836dfd29193ed8c2ceb1d6a29125c71655b7b00d6be25eb53536","group_id":"11895784787d836dfd29193ed8c2ceb1d6a29125c71655b7b00d6be25eb53536","id":"INTERVALS-0010591","index":10591,"input":{"contigs":{"synthetic_A":1484,"synthetic_B":1239},"features":[{"basis":"one_closed","contig":"synthetic_B","end":908,"start":866,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":902,"start":872,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1240,"start":1149,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":266,"start":249,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":172,"start":148,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":903,"start":871,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":29},{"feature_index":1,"overlap_bases":27}],"query_bed":[920,949],"query_length":29,"union_overlap_bases":29},"family":"nested","fingerprint":"e63102d4a36a099df02b5571b0131322022c939a2b62707e819cc60cd32f5528","group_id":"e63102d4a36a099df02b5571b0131322022c939a2b62707e819cc60cd32f5528","id":"INTERVALS-0010596","index":10596,"input":{"contigs":{"synthetic_A":1362,"synthetic_B":1777},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":954,"start":915,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":948,"start":922,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":173,"start":66,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":749,"start":649,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":396,"start":373,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":644,"start":559,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":129,"start":22,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":585,"start":488,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":102,"start":35,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1538,"start":1527,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":564,"start":555,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":949,"start":921,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":43},{"feature_index":5,"overlap_bases":5}],"query_bed":[34,77],"query_length":43,"union_overlap_bases":43},"family":"stranded","fingerprint":"3fdcd28242936cd6f35416769cc6695830737b41d6907f475af1274e0ab23006","group_id":"3fdcd28242936cd6f35416769cc6695830737b41d6907f475af1274e0ab23006","id":"INTERVALS-0010673","index":10673,"input":{"contigs":{"synthetic_A":678,"synthetic_B":632},"features":[{"basis":"one_closed","contig":"synthetic_B","end":77,"start":35,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":77,"start":35,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":111,"start":23,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":223,"start":144,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":549,"start":457,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":119,"start":73,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":277,"start":219,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":314,"start":256,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":510,"start":449,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":77,"start":34,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":51},{"feature_index":2,"overlap_bases":2},{"feature_index":9,"overlap_bases":52}],"query_bed":[1183,1235],"query_length":52,"union_overlap_bases":52},"family":"overlapping_blocks","fingerprint":"b2a968b60b3187bb2f7c56d86473c4077e1c35111d83b52c71788f5a3e636796","group_id":"b2a968b60b3187bb2f7c56d86473c4077e1c35111d83b52c71788f5a3e636796","id":"INTERVALS-0010697","index":10697,"input":{"contigs":{"synthetic_A":1478,"synthetic_B":1070},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1186,"start":1180,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1235,"start":1184,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1238,"start":1234,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1261,"start":1243,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":923,"start":890,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":121,"start":11,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":137,"start":48,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":329,"start":301,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":911,"start":874,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1245,"start":1127,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1235,"start":1183,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[24,73],"query_length":49,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"82f7ce9641d571e9b4dccc60dadf95c65ba76b4de374fddec60e0e395d351305","group_id":"82f7ce9641d571e9b4dccc60dadf95c65ba76b4de374fddec60e0e395d351305","id":"INTERVALS-0010710","index":10710,"input":{"contigs":{"synthetic_A":774,"synthetic_B":1144},"features":[{"basis":"one_closed","contig":"synthetic_A","end":24,"start":15,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":113,"start":73,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":277,"start":239,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":764,"start":677,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":532,"start":511,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":480,"start":381,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":579,"start":571,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":719,"start":628,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":502,"start":392,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":179,"start":152,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":73,"start":25,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":64}],"query_bed":[305,369],"query_length":64,"union_overlap_bases":64},"family":"stranded","fingerprint":"a9a933d6ea85dceb34d1a5dc46d4e171fe05f2734d31a7c48b7a78929b74f48c","group_id":"a9a933d6ea85dceb34d1a5dc46d4e171fe05f2734d31a7c48b7a78929b74f48c","id":"INTERVALS-0010718","index":10718,"input":{"contigs":{"synthetic_A":981,"synthetic_B":724},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":369,"start":305,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":369,"start":306,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":445,"start":341,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":888,"start":772,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":346,"start":312,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":132,"start":132,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":369,"start":306,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":54}],"query_bed":[1464,1518],"query_length":54,"union_overlap_bases":54},"family":"stranded","fingerprint":"4ca0578c26586acd6071d1704a0584fa2aa3416debb562808fe1e49f5add3635","group_id":"4ca0578c26586acd6071d1704a0584fa2aa3416debb562808fe1e49f5add3635","id":"INTERVALS-0010743","index":10743,"input":{"contigs":{"synthetic_A":896,"synthetic_B":1795},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1518,"start":1464,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1518,"start":1464,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":131,"start":16,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1713,"start":1656,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":137,"start":120,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":678,"start":676,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":602,"start":503,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1301,"start":1270,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":953,"start":930,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":236,"start":192,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1518,"start":1464,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":69},{"feature_index":2,"overlap_bases":4},{"feature_index":3,"overlap_bases":21}],"query_bed":[225,294],"query_length":69,"union_overlap_bases":69},"family":"coordinate_conversion","fingerprint":"7e1554203cbf16eeccf1075ac646e8109e25e609b1d0080a8fe9b2db01411d1d","group_id":"7e1554203cbf16eeccf1075ac646e8109e25e609b1d0080a8fe9b2db01411d1d","id":"INTERVALS-0010749","index":10749,"input":{"contigs":{"synthetic_A":667,"synthetic_B":804},"features":[{"basis":"one_closed","contig":"synthetic_A","end":294,"start":226,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":137,"start":85,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":229,"start":205,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":381,"start":274,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":244,"start":172,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":294,"start":226,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":68},{"feature_index":2,"overlap_bases":2}],"query_bed":[322,391],"query_length":69,"union_overlap_bases":69},"family":"overlapping_blocks","fingerprint":"e4ad51f68bacd43ee1450751cffe85350dfb33b670a6d0762175b44e831373e5","group_id":"e4ad51f68bacd43ee1450751cffe85350dfb33b670a6d0762175b44e831373e5","id":"INTERVALS-0010757","index":10757,"input":{"contigs":{"synthetic_A":619,"synthetic_B":903},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":325,"start":319,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":391,"start":324,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":394,"start":389,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":53,"start":42,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":707,"start":622,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":521,"start":440,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":222,"start":214,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":714,"start":690,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":166,"start":103,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":391,"start":323,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":9},{"feature_index":1,"overlap_bases":7},{"feature_index":7,"overlap_bases":9}],"query_bed":[125,134],"query_length":9,"union_overlap_bases":9},"family":"nested","fingerprint":"39f5bbea82b79d9f06ade6f4b00c471ed5e52842e65462d4d7202bd7be4a101b","group_id":"39f5bbea82b79d9f06ade6f4b00c471ed5e52842e65462d4d7202bd7be4a101b","id":"INTERVALS-0010771","index":10771,"input":{"contigs":{"synthetic_A":828,"synthetic_B":1649},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":139,"start":120,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":133,"start":126,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1010,"start":894,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":248,"start":218,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1372,"start":1341,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":939,"start":846,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":116,"start":49,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":177,"start":88,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":211,"start":189,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1069,"start":1043,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":134,"start":125,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":41},{"feature_index":2,"overlap_bases":2},{"feature_index":4,"overlap_bases":40}],"query_bed":[339,381],"query_length":42,"union_overlap_bases":42},"family":"overlapping_blocks","fingerprint":"5b1ef8a4076b7592db15f01581002caddd6545cdc820f93656acae51d7a63ee2","group_id":"5b1ef8a4076b7592db15f01581002caddd6545cdc820f93656acae51d7a63ee2","id":"INTERVALS-0010772","index":10772,"input":{"contigs":{"synthetic_A":743,"synthetic_B":1481},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":342,"start":336,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":381,"start":341,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":384,"start":379,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1158,"start":1118,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":379,"start":263,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":474,"start":413,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":182,"start":70,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1089,"start":1069,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":150,"start":88,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":603,"start":533,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":816,"start":725,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":381,"start":339,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[654,673],"query_length":19,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"47052fa02469736bbe490150a8f8ee38f50798df7280eaaf340debf15db8ae8e","group_id":"47052fa02469736bbe490150a8f8ee38f50798df7280eaaf340debf15db8ae8e","id":"INTERVALS-0010775","index":10775,"input":{"contigs":{"synthetic_A":1081,"synthetic_B":907},"features":[{"basis":"one_closed","contig":"synthetic_B","end":654,"start":653,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":702,"start":673,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":33,"start":14,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":569,"start":456,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":862,"start":776,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":210,"start":108,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":380,"start":315,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":431,"start":364,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":838,"start":730,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":843,"start":755,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":944,"start":933,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":673,"start":655,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":24},{"feature_index":1,"overlap_bases":22}],"query_bed":[475,499],"query_length":24,"union_overlap_bases":24},"family":"nested","fingerprint":"dede64d619124c6214f018f5bf226ceccdc80a6c3b21dcee91d2003dedd4b0ed","group_id":"dede64d619124c6214f018f5bf226ceccdc80a6c3b21dcee91d2003dedd4b0ed","id":"INTERVALS-0010786","index":10786,"input":{"contigs":{"synthetic_A":747,"synthetic_B":600},"features":[{"basis":"one_closed","contig":"synthetic_A","end":504,"start":471,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":498,"start":476,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":572,"start":542,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":175,"start":107,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":249,"start":207,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":385,"start":382,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":669,"start":609,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":411,"start":319,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":272,"start":186,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":447,"start":356,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":358,"start":323,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":499,"start":475,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":79},{"feature_index":2,"overlap_bases":2}],"query_bed":[203,283],"query_length":80,"union_overlap_bases":80},"family":"overlapping_blocks","fingerprint":"60ccf6b69f2bec188e2aec883dbf8eb85e75a402fd7c9cfed28af85576dca095","group_id":"60ccf6b69f2bec188e2aec883dbf8eb85e75a402fd7c9cfed28af85576dca095","id":"INTERVALS-0010792","index":10792,"input":{"contigs":{"synthetic_A":635,"synthetic_B":1117},"features":[{"basis":"one_closed","contig":"synthetic_A","end":206,"start":201,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":283,"start":205,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":286,"start":281,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":524,"start":419,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":23,"start":2,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":192,"start":163,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":184,"start":138,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":283,"start":203,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":51},{"feature_index":1,"overlap_bases":49}],"query_bed":[980,1031],"query_length":51,"union_overlap_bases":51},"family":"nested","fingerprint":"1a4c7ca278f645781f7c66f42a8c6709e492cefbaa53357895449fc99da4de0f","group_id":"1a4c7ca278f645781f7c66f42a8c6709e492cefbaa53357895449fc99da4de0f","id":"INTERVALS-0010801","index":10801,"input":{"contigs":{"synthetic_A":1356,"synthetic_B":1328},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1036,"start":976,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1030,"start":982,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":506,"start":476,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":643,"start":606,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":124,"start":92,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":567,"start":543,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":679,"start":645,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":936,"start":871,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1031,"start":981,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":17}],"query_bed":[592,609],"query_length":17,"union_overlap_bases":17},"family":"coordinate_conversion","fingerprint":"b41defe6576656235c63b388d5a9a07e527d12cb847924286aace396726fcfc3","group_id":"b41defe6576656235c63b388d5a9a07e527d12cb847924286aace396726fcfc3","id":"INTERVALS-0010804","index":10804,"input":{"contigs":{"synthetic_A":1089,"synthetic_B":855},"features":[{"basis":"one_closed","contig":"synthetic_B","end":609,"start":593,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":799,"start":687,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":165,"start":64,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":372,"start":324,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":620,"start":544,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":146,"start":132,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":559,"start":478,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":609,"start":593,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":43}],"query_bed":[669,712],"query_length":43,"union_overlap_bases":43},"family":"stranded","fingerprint":"736d8ae2ada159eafe446d7e2c528e07bd24ed8b1c85534aa888d8f1dfbb141c","group_id":"736d8ae2ada159eafe446d7e2c528e07bd24ed8b1c85534aa888d8f1dfbb141c","id":"INTERVALS-0010818","index":10818,"input":{"contigs":{"synthetic_A":1756,"synthetic_B":1115},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":712,"start":669,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":712,"start":670,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1012,"start":925,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":380,"start":349,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":160,"start":158,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":735,"start":624,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":712,"start":669,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[319,392],"query_length":73,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"029ec484890e570d2aedb0a4f1d9beed2dafe7244597b0cfaeaed6f925615caf","group_id":"029ec484890e570d2aedb0a4f1d9beed2dafe7244597b0cfaeaed6f925615caf","id":"INTERVALS-0010820","index":10820,"input":{"contigs":{"synthetic_A":841,"synthetic_B":951},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":319,"start":309,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":395,"start":392,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":130,"start":62,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":717,"start":693,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":341,"start":224,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":591,"start":574,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":742,"start":689,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":704,"start":619,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":686,"start":640,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":798,"start":725,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":392,"start":320,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":61}],"query_bed":[705,766],"query_length":61,"union_overlap_bases":61},"family":"coordinate_conversion","fingerprint":"8be4eac0002b238ec51a7d785337db7640d4e54add61a66ad2f0a50693dbc84a","group_id":"8be4eac0002b238ec51a7d785337db7640d4e54add61a66ad2f0a50693dbc84a","id":"INTERVALS-0010829","index":10829,"input":{"contigs":{"synthetic_A":1313,"synthetic_B":978},"features":[{"basis":"one_closed","contig":"synthetic_A","end":766,"start":706,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1037,"start":981,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":147,"start":66,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1196,"start":1096,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":961,"start":956,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":425,"start":336,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":766,"start":706,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":56},{"feature_index":2,"overlap_bases":2}],"query_bed":[259,316],"query_length":57,"union_overlap_bases":57},"family":"overlapping_blocks","fingerprint":"f9abf8825379b80743caa93a83d9b6e465ba4b5f8caf1980ecfbfbfd8bd73684","group_id":"f9abf8825379b80743caa93a83d9b6e465ba4b5f8caf1980ecfbfbfd8bd73684","id":"INTERVALS-0010837","index":10837,"input":{"contigs":{"synthetic_A":1599,"synthetic_B":717},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":262,"start":256,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":316,"start":261,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":319,"start":315,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":76,"start":21,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":145,"start":26,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":593,"start":477,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1402,"start":1303,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":316,"start":259,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":6}],"query_bed":[392,398],"query_length":6,"union_overlap_bases":6},"family":"coordinate_conversion","fingerprint":"ac33e0a6283c92e6e5382d39b3a9e91c33e3b4a9ee005260beef19c86d0c4609","group_id":"ac33e0a6283c92e6e5382d39b3a9e91c33e3b4a9ee005260beef19c86d0c4609","id":"INTERVALS-0010849","index":10849,"input":{"contigs":{"synthetic_A":804,"synthetic_B":810},"features":[{"basis":"one_closed","contig":"synthetic_B","end":398,"start":393,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":648,"start":620,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":723,"start":625,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":365,"start":260,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":136,"start":30,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":656,"start":637,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":191,"start":109,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":535,"start":502,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":398,"start":393,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":24},{"feature_index":1,"overlap_bases":22}],"query_bed":[1301,1325],"query_length":24,"union_overlap_bases":24},"family":"nested","fingerprint":"91e702c83a3f606868786ae3896ea0bd0cc03f6a86041129aae56e5084b61782","group_id":"91e702c83a3f606868786ae3896ea0bd0cc03f6a86041129aae56e5084b61782","id":"INTERVALS-0010866","index":10866,"input":{"contigs":{"synthetic_A":1337,"synthetic_B":1674},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1330,"start":1296,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1324,"start":1303,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":198,"start":187,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1197,"start":1123,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":124,"start":30,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":380,"start":317,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1415,"start":1398,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":208,"start":104,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":139,"start":133,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1018,"start":903,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1295,"start":1289,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1325,"start":1302,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1322,1361],"query_length":39,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"97bdc510295fdea584b35459f63b4d5e08196eaafd7db5fdf196e672a325a692","group_id":"97bdc510295fdea584b35459f63b4d5e08196eaafd7db5fdf196e672a325a692","id":"INTERVALS-0010880","index":10880,"input":{"contigs":{"synthetic_A":1429,"synthetic_B":1714},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1322,"start":1303,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1378,"start":1361,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":900,"start":821,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":732,"start":711,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":926,"start":820,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1361,"start":1323,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":28},{"feature_index":4,"overlap_bases":28}],"query_bed":[342,370],"query_length":28,"union_overlap_bases":28},"family":"stranded","fingerprint":"a5b3176a3824640cd5f21d0d312f13cf337325e7682ddeeba1f6f5fcb3b1f163","group_id":"a5b3176a3824640cd5f21d0d312f13cf337325e7682ddeeba1f6f5fcb3b1f163","id":"INTERVALS-0010888","index":10888,"input":{"contigs":{"synthetic_A":918,"synthetic_B":698},"features":[{"basis":"one_closed","contig":"synthetic_B","end":370,"start":343,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":370,"start":342,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":201,"start":167,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":211,"start":188,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":370,"start":254,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":144,"start":135,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":545,"start":478,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":753,"start":665,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":164,"start":121,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":175,"start":161,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":525,"start":519,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":370,"start":343,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":13},{"feature_index":1,"overlap_bases":11}],"query_bed":[297,310],"query_length":13,"union_overlap_bases":13},"family":"nested","fingerprint":"2e3ab74cc554cf4b0d0b0c724ebb95d0bd256a449eac40274a6844a83f973089","group_id":"2e3ab74cc554cf4b0d0b0c724ebb95d0bd256a449eac40274a6844a83f973089","id":"INTERVALS-0010896","index":10896,"input":{"contigs":{"synthetic_A":679,"synthetic_B":1691},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":315,"start":292,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":309,"start":298,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":217,"start":99,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":522,"start":460,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":694,"start":619,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":275,"start":189,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":79,"start":33,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":310,"start":298,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":51},{"feature_index":2,"overlap_bases":2}],"query_bed":[1221,1273],"query_length":52,"union_overlap_bases":52},"family":"overlapping_blocks","fingerprint":"934de81641873d65e87397fb76977add6ae85d9cd4709aec37f5162dbac88852","group_id":"934de81641873d65e87397fb76977add6ae85d9cd4709aec37f5162dbac88852","id":"INTERVALS-0010902","index":10902,"input":{"contigs":{"synthetic_A":1615,"synthetic_B":1227},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1224,"start":1218,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1273,"start":1222,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1276,"start":1272,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":593,"start":491,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":835,"start":728,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":511,"start":478,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":236,"start":127,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":585,"start":575,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":578,"start":575,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1273,"start":1222,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":72}],"query_bed":[175,247],"query_length":72,"union_overlap_bases":72},"family":"coordinate_conversion","fingerprint":"189280e6d6156f319ecf4e6d57e2466d74a181561c5ed02987e5b814ec839d80","group_id":"189280e6d6156f319ecf4e6d57e2466d74a181561c5ed02987e5b814ec839d80","id":"INTERVALS-0010904","index":10904,"input":{"contigs":{"synthetic_A":652,"synthetic_B":1137},"features":[{"basis":"one_closed","contig":"synthetic_A","end":247,"start":176,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":593,"start":499,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":375,"start":328,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":869,"start":862,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":617,"start":509,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":739,"start":708,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":908,"start":884,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":156,"start":46,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":328,"start":310,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":366,"start":365,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":569,"start":499,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":19,"start":18,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":247,"start":176,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":40},{"feature_index":2,"overlap_bases":2}],"query_bed":[761,802],"query_length":41,"union_overlap_bases":41},"family":"overlapping_blocks","fingerprint":"b7780a463ba1d7a5c48cdf4a3504f7b90a306564cc444d7151ef7b25c903a24b","group_id":"b7780a463ba1d7a5c48cdf4a3504f7b90a306564cc444d7151ef7b25c903a24b","id":"INTERVALS-0010932","index":10932,"input":{"contigs":{"synthetic_A":1036,"synthetic_B":1643},"features":[{"basis":"one_closed","contig":"synthetic_B","end":764,"start":759,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":802,"start":762,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":805,"start":801,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":442,"start":362,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":160,"start":62,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1428,"start":1413,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1389,"start":1356,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":802,"start":761,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":44}],"query_bed":[1280,1324],"query_length":44,"union_overlap_bases":44},"family":"coordinate_conversion","fingerprint":"1787c23837983bcc4ca3c52073afdfa1cd9c55a5bcb831a799687b836626ea74","group_id":"1787c23837983bcc4ca3c52073afdfa1cd9c55a5bcb831a799687b836626ea74","id":"INTERVALS-0010994","index":10994,"input":{"contigs":{"synthetic_A":1633,"synthetic_B":1709},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1324,"start":1281,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":599,"start":522,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":561,"start":524,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":168,"start":68,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1015,"start":966,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":909,"start":837,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":798,"start":710,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":334,"start":217,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1324,"start":1281,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[541,570],"query_length":29,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"3a836102a7d7e507760913448156c8cf77877e247177c39a81386656666a9a79","group_id":"3a836102a7d7e507760913448156c8cf77877e247177c39a81386656666a9a79","id":"INTERVALS-0011015","index":11015,"input":{"contigs":{"synthetic_A":757,"synthetic_B":1143},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":541,"start":539,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":584,"start":571,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":102,"start":38,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":668,"start":612,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":899,"start":838,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":179,"start":149,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":84,"start":29,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":570,"start":542,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":58}],"query_bed":[203,261],"query_length":58,"union_overlap_bases":58},"family":"stranded","fingerprint":"22803d50ce0988d9b2192836976fe5e17d49fdc5b1ea7399a869238bd7b4168e","group_id":"22803d50ce0988d9b2192836976fe5e17d49fdc5b1ea7399a869238bd7b4168e","id":"INTERVALS-0011018","index":11018,"input":{"contigs":{"synthetic_A":1246,"synthetic_B":1776},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":261,"start":203,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":261,"start":204,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":126,"start":92,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":368,"start":351,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":936,"start":835,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":261,"start":203,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":34}],"query_bed":[69,103],"query_length":34,"union_overlap_bases":34},"family":"coordinate_conversion","fingerprint":"b4944c9a23318cb9db1bc15c5b3cb447ddcb184abd5a524389094c24a96f286f","group_id":"b4944c9a23318cb9db1bc15c5b3cb447ddcb184abd5a524389094c24a96f286f","id":"INTERVALS-0011034","index":11034,"input":{"contigs":{"synthetic_A":1520,"synthetic_B":1364},"features":[{"basis":"one_closed","contig":"synthetic_B","end":103,"start":70,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":58,"start":4,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":411,"start":355,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1318,"start":1298,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":896,"start":874,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":103,"start":70,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":9},{"feature_index":2,"overlap_bases":2}],"query_bed":[406,416],"query_length":10,"union_overlap_bases":10},"family":"overlapping_blocks","fingerprint":"64cf500617bf902084e5c7cbe9c3ae9f251ea9f8d6f3c4da1ca535e269b6d95a","group_id":"64cf500617bf902084e5c7cbe9c3ae9f251ea9f8d6f3c4da1ca535e269b6d95a","id":"INTERVALS-0011042","index":11042,"input":{"contigs":{"synthetic_A":938,"synthetic_B":1411},"features":[{"basis":"one_closed","contig":"synthetic_A","end":409,"start":404,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":416,"start":408,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":419,"start":414,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":218,"start":128,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":249,"start":142,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":94,"start":34,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":390,"start":359,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":600,"start":507,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1101,"start":1067,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":94,"start":37,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1102,"start":1009,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":58,"start":23,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":416,"start":407,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":37},{"feature_index":1,"overlap_bases":35}],"query_bed":[569,606],"query_length":37,"union_overlap_bases":37},"family":"nested","fingerprint":"8029933481af68aad92e39f718e76abd59b7ee62fcb8d00e35032165e4e01f50","group_id":"8029933481af68aad92e39f718e76abd59b7ee62fcb8d00e35032165e4e01f50","id":"INTERVALS-0011046","index":11046,"input":{"contigs":{"synthetic_A":1595,"synthetic_B":1086},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":611,"start":564,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":605,"start":570,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":870,"start":769,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1116,"start":1079,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":321,"start":292,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":606,"start":569,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[577,591],"query_length":14,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"09950050132337c865b3fb6bba3887a6e700ac5e07d190add3d38f2628b709cf","group_id":"09950050132337c865b3fb6bba3887a6e700ac5e07d190add3d38f2628b709cf","id":"INTERVALS-0011050","index":11050,"input":{"contigs":{"synthetic_A":777,"synthetic_B":867},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":577,"start":557,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":615,"start":591,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":465,"start":424,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":471,"start":414,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":224,"start":163,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":56,"start":21,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":516,"start":467,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":647,"start":584,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":722,"start":680,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":627,"start":549,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":121,"start":52,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":359,"start":347,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":591,"start":577,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":23},{"feature_index":1,"overlap_bases":21}],"query_bed":[425,448],"query_length":23,"union_overlap_bases":23},"family":"nested","fingerprint":"e605b6bab44377a2f4078c5fc25b05dfcc6acaf8484551712763dc0310c05a84","group_id":"e605b6bab44377a2f4078c5fc25b05dfcc6acaf8484551712763dc0310c05a84","id":"INTERVALS-0011061","index":11061,"input":{"contigs":{"synthetic_A":1417,"synthetic_B":769},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":453,"start":420,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":447,"start":427,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":494,"start":453,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":225,"start":199,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":247,"start":205,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":146,"start":75,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":645,"start":605,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":785,"start":771,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":448,"start":426,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":20}],"query_bed":[1020,1040],"query_length":20,"union_overlap_bases":20},"family":"coordinate_conversion","fingerprint":"cda5171eeae1440fda6288cb6d71dfc10069df5190ae16ee9ab0302f374e1cb5","group_id":"cda5171eeae1440fda6288cb6d71dfc10069df5190ae16ee9ab0302f374e1cb5","id":"INTERVALS-0011069","index":11069,"input":{"contigs":{"synthetic_A":1356,"synthetic_B":1272},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1040,"start":1021,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":775,"start":712,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":643,"start":548,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1072,"start":1043,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":184,"start":124,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":916,"start":859,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":282,"start":221,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1040,"start":1021,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[170,175],"query_length":5,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"0c72d0ea7bbe0fc1d5cf44826dc5b024e2803da62a865c5f7d8396701927eb30","group_id":"0c72d0ea7bbe0fc1d5cf44826dc5b024e2803da62a865c5f7d8396701927eb30","id":"INTERVALS-0011080","index":11080,"input":{"contigs":{"synthetic_A":602,"synthetic_B":1247},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":170,"start":153,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":189,"start":175,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":966,"start":950,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":351,"start":333,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":495,"start":388,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":429,"start":371,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":545,"start":471,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":401,"start":391,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1009,"start":991,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":967,"start":862,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":175,"start":171,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56}],"query_bed":[428,484],"query_length":56,"union_overlap_bases":56},"family":"stranded","fingerprint":"226f87d0c967bdd43091d101b256d1ba40fc46d8e7e53d7b4da5e9c7261d8f57","group_id":"226f87d0c967bdd43091d101b256d1ba40fc46d8e7e53d7b4da5e9c7261d8f57","id":"INTERVALS-0011093","index":11093,"input":{"contigs":{"synthetic_A":1374,"synthetic_B":1469},"features":[{"basis":"one_closed","contig":"synthetic_A","end":484,"start":429,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":484,"start":429,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1028,"start":1000,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":55,"start":17,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":545,"start":435,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1403,"start":1338,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":273,"start":166,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1048,"start":1005,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":469,"start":370,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":207,"start":129,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":346,"start":291,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":512,"start":491,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":484,"start":429,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73},{"feature_index":6,"overlap_bases":37}],"query_bed":[682,755],"query_length":73,"union_overlap_bases":73},"family":"coordinate_conversion","fingerprint":"fad5b28e6d96d20e6f2a9a05fd1720961d7219c7949ac1120c63d8fa46259bc6","group_id":"fad5b28e6d96d20e6f2a9a05fd1720961d7219c7949ac1120c63d8fa46259bc6","id":"INTERVALS-0011109","index":11109,"input":{"contigs":{"synthetic_A":1177,"synthetic_B":1623},"features":[{"basis":"one_closed","contig":"synthetic_B","end":755,"start":683,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":321,"start":258,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":882,"start":856,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":810,"start":707,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1425,"start":1344,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1530,"start":1474,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":808,"start":719,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":755,"start":683,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":43},{"feature_index":2,"overlap_bases":2}],"query_bed":[387,431],"query_length":44,"union_overlap_bases":44},"family":"overlapping_blocks","fingerprint":"919c579676797ec1f5fc1e620da6854437e432f6997b75f789106b004fff88db","group_id":"919c579676797ec1f5fc1e620da6854437e432f6997b75f789106b004fff88db","id":"INTERVALS-0011117","index":11117,"input":{"contigs":{"synthetic_A":1493,"synthetic_B":648},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":390,"start":384,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":431,"start":389,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":434,"start":429,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1410,"start":1322,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":97,"start":71,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":431,"start":387,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":37},{"feature_index":2,"overlap_bases":2}],"query_bed":[397,435],"query_length":38,"union_overlap_bases":38},"family":"overlapping_blocks","fingerprint":"3661aa98ae48c42b6a659e31c90a14c0e99a2ee711f21cd111f5667e45d8d597","group_id":"3661aa98ae48c42b6a659e31c90a14c0e99a2ee711f21cd111f5667e45d8d597","id":"INTERVALS-0011122","index":11122,"input":{"contigs":{"synthetic_A":1062,"synthetic_B":1382},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":400,"start":394,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":435,"start":398,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":438,"start":434,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":861,"start":803,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":301,"start":226,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":942,"start":931,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":435,"start":398,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":50}],"query_bed":[1297,1347],"query_length":50,"union_overlap_bases":50},"family":"coordinate_conversion","fingerprint":"c060ff0a74d5915346d093a1988b95840815498e7c9a6d344b2139edc6ec2fc8","group_id":"c060ff0a74d5915346d093a1988b95840815498e7c9a6d344b2139edc6ec2fc8","id":"INTERVALS-0011134","index":11134,"input":{"contigs":{"synthetic_A":1771,"synthetic_B":1577},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1347,"start":1298,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":848,"start":830,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":553,"start":440,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1004,"start":986,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1332,"start":1331,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":959,"start":912,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":494,"start":396,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":292,"start":262,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":506,"start":465,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":342,"start":334,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":549,"start":499,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1347,"start":1298,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":14}],"query_bed":[454,468],"query_length":14,"union_overlap_bases":14},"family":"stranded","fingerprint":"4a42d50051220615d25371c89ee48c309878edf1f2f84480ff5f3e717ef10e4a","group_id":"4a42d50051220615d25371c89ee48c309878edf1f2f84480ff5f3e717ef10e4a","id":"INTERVALS-0011138","index":11138,"input":{"contigs":{"synthetic_A":1154,"synthetic_B":1320},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":468,"start":454,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":468,"start":454,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":734,"start":660,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":894,"start":824,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1032,"start":962,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":521,"start":511,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1093,"start":984,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":9,"start":8,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":468,"start":455,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":49}],"query_bed":[537,586],"query_length":49,"union_overlap_bases":49},"family":"coordinate_conversion","fingerprint":"2ca33fa8cd7d82f71fcfc54ab59e10840edf557f9f2cac375ddb9f422e48e8fe","group_id":"2ca33fa8cd7d82f71fcfc54ab59e10840edf557f9f2cac375ddb9f422e48e8fe","id":"INTERVALS-0011144","index":11144,"input":{"contigs":{"synthetic_A":1486,"synthetic_B":1370},"features":[{"basis":"one_closed","contig":"synthetic_B","end":586,"start":538,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":425,"start":416,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":524,"start":451,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":773,"start":673,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1131,"start":1108,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":586,"start":538,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":52},{"feature_index":2,"overlap_bases":2},{"feature_index":3,"overlap_bases":40}],"query_bed":[358,411],"query_length":53,"union_overlap_bases":53},"family":"overlapping_blocks","fingerprint":"07142cf2a68b8a241bab6ae35dc53735e63b9c12670d795b1e6a25f6ad988081","group_id":"07142cf2a68b8a241bab6ae35dc53735e63b9c12670d795b1e6a25f6ad988081","id":"INTERVALS-0011147","index":11147,"input":{"contigs":{"synthetic_A":1356,"synthetic_B":778},"features":[{"basis":"one_closed","contig":"synthetic_B","end":361,"start":356,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":411,"start":360,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":414,"start":410,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":409,"start":370,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":728,"start":674,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":696,"start":643,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":411,"start":359,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":72},{"feature_index":1,"overlap_bases":70},{"feature_index":8,"overlap_bases":56}],"query_bed":[337,409],"query_length":72,"union_overlap_bases":72},"family":"nested","fingerprint":"a2dfec2ae93e7784a9903c5b3db19dd40c00b41c80d9276893abc237f8acb70c","group_id":"a2dfec2ae93e7784a9903c5b3db19dd40c00b41c80d9276893abc237f8acb70c","id":"INTERVALS-0011151","index":11151,"input":{"contigs":{"synthetic_A":1781,"synthetic_B":719},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":414,"start":332,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":408,"start":339,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1086,"start":1074,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":182,"start":87,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":291,"start":278,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":448,"start":338,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":178,"start":144,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1390,"start":1325,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":393,"start":307,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":579,"start":545,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":409,"start":338,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":61},{"feature_index":2,"overlap_bases":49}],"query_bed":[495,556],"query_length":61,"union_overlap_bases":61},"family":"coordinate_conversion","fingerprint":"90ea576c7e90d9a6560883935c6f9eae08bd0b53a7d07aa73a7bf5938d4bf1f0","group_id":"90ea576c7e90d9a6560883935c6f9eae08bd0b53a7d07aa73a7bf5938d4bf1f0","id":"INTERVALS-0011154","index":11154,"input":{"contigs":{"synthetic_A":1072,"synthetic_B":1340},"features":[{"basis":"one_closed","contig":"synthetic_A","end":556,"start":496,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1045,"start":1013,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":544,"start":457,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":77,"start":17,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":984,"start":907,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":73,"start":39,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":969,"start":854,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":769,"start":692,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":480,"start":478,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":878,"start":860,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":556,"start":496,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[764,791],"query_length":27,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"12ce3be6680fe4aa8a6e2599b966f1b2196a248da54551142216e34644964cbe","group_id":"12ce3be6680fe4aa8a6e2599b966f1b2196a248da54551142216e34644964cbe","id":"INTERVALS-0011170","index":11170,"input":{"contigs":{"synthetic_A":773,"synthetic_B":1232},"features":[{"basis":"one_closed","contig":"synthetic_B","end":764,"start":763,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":813,"start":791,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":128,"start":115,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1126,"start":1102,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":348,"start":315,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":147,"start":36,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":791,"start":764,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":79}],"query_bed":[522,601],"query_length":79,"union_overlap_bases":79},"family":"stranded","fingerprint":"c9ba5952167b81863f7ded9b37b5583e1fa4b0e919dd498f1be9a3bfd1b9180b","group_id":"c9ba5952167b81863f7ded9b37b5583e1fa4b0e919dd498f1be9a3bfd1b9180b","id":"INTERVALS-0011188","index":11188,"input":{"contigs":{"synthetic_A":1031,"synthetic_B":1228},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":601,"start":522,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":601,"start":522,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":762,"start":722,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":175,"start":109,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1113,"start":1097,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":446,"start":390,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":424,"start":399,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":128,"start":86,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":666,"start":610,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1022,"start":980,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":956,"start":885,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":900,"start":890,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":601,"start":522,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[29,97],"query_length":68,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"241feeda19b53cf2f53568e655f2a49dc4261be1d8f8bac7a7ca8e1d55f46744","group_id":"241feeda19b53cf2f53568e655f2a49dc4261be1d8f8bac7a7ca8e1d55f46744","id":"INTERVALS-0011195","index":11195,"input":{"contigs":{"synthetic_A":1599,"synthetic_B":1170},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":29,"start":28,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":109,"start":97,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1217,"start":1098,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":215,"start":101,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":142,"start":134,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":475,"start":421,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":874,"start":871,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":239,"start":125,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":468,"start":462,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":97,"start":30,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1451,1466],"query_length":15,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"5184957e0c269d7ded3ca92084a59b52ed8830bea581ea5312212e33241de298","group_id":"5184957e0c269d7ded3ca92084a59b52ed8830bea581ea5312212e33241de298","id":"INTERVALS-0011200","index":11200,"input":{"contigs":{"synthetic_A":1089,"synthetic_B":1698},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1451,"start":1446,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1482,"start":1467,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":458,"start":403,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1008,"start":889,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":730,"start":628,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":272,"start":209,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1310,"start":1194,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":998,"start":917,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1622,"start":1547,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":167,"start":60,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":760,"start":658,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":834,"start":749,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1466,"start":1451,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":28},{"feature_index":2,"overlap_bases":2}],"query_bed":[251,280],"query_length":29,"union_overlap_bases":29},"family":"overlapping_blocks","fingerprint":"2341259cda8643a16aa0e7e01fe4c9dc6a483fe7fd927537345c24b8673c8b17","group_id":"2341259cda8643a16aa0e7e01fe4c9dc6a483fe7fd927537345c24b8673c8b17","id":"INTERVALS-0011217","index":11217,"input":{"contigs":{"synthetic_A":1485,"synthetic_B":1721},"features":[{"basis":"one_closed","contig":"synthetic_A","end":254,"start":249,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":280,"start":252,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":283,"start":279,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":415,"start":379,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1370,"start":1314,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":149,"start":102,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1249,"start":1206,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":901,"start":791,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":169,"start":50,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":789,"start":740,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":135,"start":30,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1349,"start":1276,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":280,"start":251,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":35},{"feature_index":1,"overlap_bases":33}],"query_bed":[131,166],"query_length":35,"union_overlap_bases":35},"family":"nested","fingerprint":"b3cae7ba206b9124375fbc9628e6754ee84d6afe5705a3b0ee99735cd90438d8","group_id":"b3cae7ba206b9124375fbc9628e6754ee84d6afe5705a3b0ee99735cd90438d8","id":"INTERVALS-0011221","index":11221,"input":{"contigs":{"synthetic_A":1784,"synthetic_B":1032},"features":[{"basis":"one_closed","contig":"synthetic_A","end":171,"start":127,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":165,"start":133,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":294,"start":242,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":166,"start":141,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":778,"start":744,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":846,"start":816,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1124,"start":1024,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":223,"start":108,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":365,"start":249,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":547,"start":528,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":341,"start":222,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":668,"start":567,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":166,"start":132,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":10},{"feature_index":2,"overlap_bases":2}],"query_bed":[466,477],"query_length":11,"union_overlap_bases":11},"family":"overlapping_blocks","fingerprint":"7017c1e671bdb755c818dfdc2cac702e1a62d90bdb59151107b2ec283c613091","group_id":"7017c1e671bdb755c818dfdc2cac702e1a62d90bdb59151107b2ec283c613091","id":"INTERVALS-0011227","index":11227,"input":{"contigs":{"synthetic_A":823,"synthetic_B":1382},"features":[{"basis":"one_closed","contig":"synthetic_A","end":469,"start":464,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":477,"start":468,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":480,"start":476,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":554,"start":495,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":471,"start":404,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":653,"start":569,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":353,"start":256,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":477,"start":466,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":72},{"feature_index":1,"overlap_bases":7},{"feature_index":3,"overlap_bases":45},{"feature_index":8,"overlap_bases":21}],"query_bed":[161,233],"query_length":72,"union_overlap_bases":72},"family":"coordinate_conversion","fingerprint":"ac117f5ce21f76666ac3fa8deed390235ad179305c887307708988f9419e44e3","group_id":"ac117f5ce21f76666ac3fa8deed390235ad179305c887307708988f9419e44e3","id":"INTERVALS-0011239","index":11239,"input":{"contigs":{"synthetic_A":1717,"synthetic_B":1663},"features":[{"basis":"one_closed","contig":"synthetic_A","end":233,"start":162,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":208,"start":202,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":699,"start":612,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":294,"start":189,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":888,"start":875,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":88,"start":42,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":404,"start":354,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":307,"start":188,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":182,"start":142,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":406,"start":400,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":500,"start":486,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":233,"start":162,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":32},{"feature_index":2,"overlap_bases":2}],"query_bed":[107,140],"query_length":33,"union_overlap_bases":33},"family":"overlapping_blocks","fingerprint":"21280d34e8e5dc595d1c0768971e8ce4b8db7f995c567664861aecf7d4044ef8","group_id":"21280d34e8e5dc595d1c0768971e8ce4b8db7f995c567664861aecf7d4044ef8","id":"INTERVALS-0011252","index":11252,"input":{"contigs":{"synthetic_A":1061,"synthetic_B":949},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":110,"start":104,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":140,"start":108,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":143,"start":138,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":172,"start":84,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":343,"start":261,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":594,"start":539,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":125,"start":122,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":140,"start":108,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":36},{"feature_index":1,"overlap_bases":34}],"query_bed":[942,978],"query_length":36,"union_overlap_bases":36},"family":"nested","fingerprint":"00cf77b6fd6f0adeb0eea243e34d39164d421c8c15111075118dfdb4d3c89658","group_id":"00cf77b6fd6f0adeb0eea243e34d39164d421c8c15111075118dfdb4d3c89658","id":"INTERVALS-0011256","index":11256,"input":{"contigs":{"synthetic_A":1388,"synthetic_B":682},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":983,"start":937,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":977,"start":944,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1126,"start":1020,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":420,"start":342,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":350,"start":239,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":388,"start":273,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":903,"start":865,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":306,"start":192,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":171,"start":115,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":153,"start":57,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":278,"start":269,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":180,"start":117,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":978,"start":942,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":37},{"feature_index":2,"overlap_bases":2}],"query_bed":[690,728],"query_length":38,"union_overlap_bases":38},"family":"overlapping_blocks","fingerprint":"3ad2fe4c6454b9d04d7a6081bb93f8a7cf9b898022485e98051edecf49b23a86","group_id":"3ad2fe4c6454b9d04d7a6081bb93f8a7cf9b898022485e98051edecf49b23a86","id":"INTERVALS-0011262","index":11262,"input":{"contigs":{"synthetic_A":1026,"synthetic_B":921},"features":[{"basis":"one_closed","contig":"synthetic_A","end":693,"start":688,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":728,"start":691,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":731,"start":727,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":801,"start":705,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":370,"start":359,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":437,"start":384,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":945,"start":903,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":420,"start":365,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":576,"start":517,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":207,"start":105,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":728,"start":691,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":24}],"query_bed":[1052,1076],"query_length":24,"union_overlap_bases":24},"family":"coordinate_conversion","fingerprint":"74f4e26612e1ff341688959593b8976b618f23294ae737fba2db527a9270e88d","group_id":"74f4e26612e1ff341688959593b8976b618f23294ae737fba2db527a9270e88d","id":"INTERVALS-0011274","index":11274,"input":{"contigs":{"synthetic_A":1419,"synthetic_B":1434},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1076,"start":1053,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":279,"start":275,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1194,"start":1132,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":232,"start":166,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":98,"start":80,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":931,"start":866,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1039,"start":1009,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":632,"start":574,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":915,"start":809,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1076,"start":1053,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":53},{"feature_index":2,"overlap_bases":2}],"query_bed":[480,534],"query_length":54,"union_overlap_bases":54},"family":"overlapping_blocks","fingerprint":"bf7432f6f7a672a9c2c193e2caa35ebef45225a6af7f6054746f2bdc3477107a","group_id":"bf7432f6f7a672a9c2c193e2caa35ebef45225a6af7f6054746f2bdc3477107a","id":"INTERVALS-0011287","index":11287,"input":{"contigs":{"synthetic_A":1747,"synthetic_B":1084},"features":[{"basis":"one_closed","contig":"synthetic_B","end":483,"start":478,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":534,"start":481,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":537,"start":533,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":733,"start":666,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":556,"start":436,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":236,"start":219,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1159,"start":1125,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1190,"start":1132,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":617,"start":575,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":934,"start":872,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1205,"start":1130,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":534,"start":481,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46}],"query_bed":[771,817],"query_length":46,"union_overlap_bases":46},"family":"stranded","fingerprint":"c64a8b987ec533a8d85c8d7801fa735754d6d8d4196296ca3610146de85cbd4e","group_id":"c64a8b987ec533a8d85c8d7801fa735754d6d8d4196296ca3610146de85cbd4e","id":"INTERVALS-0011288","index":11288,"input":{"contigs":{"synthetic_A":1629,"synthetic_B":873},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":817,"start":771,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":817,"start":772,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":435,"start":429,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":602,"start":554,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":242,"start":214,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":540,"start":471,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":317,"start":200,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":609,"start":595,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":349,"start":318,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":153,"start":81,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":386,"start":336,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":321,"start":272,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":817,"start":772,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18}],"query_bed":[536,554],"query_length":18,"union_overlap_bases":18},"family":"coordinate_conversion","fingerprint":"999e6d6ca2863cd036b56033aa448995ab575dd7e3d72e68e9791afe9fb6fb52","group_id":"999e6d6ca2863cd036b56033aa448995ab575dd7e3d72e68e9791afe9fb6fb52","id":"INTERVALS-0011294","index":11294,"input":{"contigs":{"synthetic_A":1313,"synthetic_B":1265},"features":[{"basis":"one_closed","contig":"synthetic_A","end":554,"start":537,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":936,"start":822,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":495,"start":455,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":772,"start":734,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1046,"start":945,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":372,"start":352,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":919,"start":866,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":634,"start":536,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":297,"start":277,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":85,"start":81,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":554,"start":537,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":70}],"query_bed":[733,803],"query_length":70,"union_overlap_bases":70},"family":"stranded","fingerprint":"b1c3e0707f32180822b4219126956c52912149e8665db4a15b41fc6615d971ee","group_id":"b1c3e0707f32180822b4219126956c52912149e8665db4a15b41fc6615d971ee","id":"INTERVALS-0011298","index":11298,"input":{"contigs":{"synthetic_A":1195,"synthetic_B":713},"features":[{"basis":"one_closed","contig":"synthetic_A","end":803,"start":734,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":803,"start":733,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":615,"start":565,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":144,"start":141,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":421,"start":312,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":451,"start":423,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":803,"start":733,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[616,624],"query_length":8,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"45b663305f657eb1d85c0c657734af3e0e51180d203366607b35a8e1d7a89474","group_id":"45b663305f657eb1d85c0c657734af3e0e51180d203366607b35a8e1d7a89474","id":"INTERVALS-0011315","index":11315,"input":{"contigs":{"synthetic_A":927,"synthetic_B":1222},"features":[{"basis":"one_closed","contig":"synthetic_B","end":616,"start":597,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":646,"start":625,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":65,"start":50,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":171,"start":72,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":644,"start":565,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":184,"start":159,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":573,"start":550,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":872,"start":772,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":624,"start":616,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":69},{"feature_index":1,"overlap_bases":67}],"query_bed":[266,335],"query_length":69,"union_overlap_bases":69},"family":"nested","fingerprint":"0e4ab7fc9d3326ef8a073d86a62b0e12be108a78beadb3a7d0f8a796c3ccc717","group_id":"0e4ab7fc9d3326ef8a073d86a62b0e12be108a78beadb3a7d0f8a796c3ccc717","id":"INTERVALS-0011321","index":11321,"input":{"contigs":{"synthetic_A":758,"synthetic_B":673},"features":[{"basis":"one_closed","contig":"synthetic_B","end":340,"start":262,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":334,"start":268,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":437,"start":379,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":366,"start":332,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":628,"start":551,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":300,"start":249,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":173,"start":156,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":364,"start":274,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":491,"start":376,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":323,"start":301,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":308,"start":264,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":562,"start":493,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":335,"start":267,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":42}],"query_bed":[602,644],"query_length":42,"union_overlap_bases":42},"family":"stranded","fingerprint":"0c26a24c12ed331edab4424aaf025929c3c874f899b2e9d00d50d0ba22b07d35","group_id":"0c26a24c12ed331edab4424aaf025929c3c874f899b2e9d00d50d0ba22b07d35","id":"INTERVALS-0011323","index":11323,"input":{"contigs":{"synthetic_A":881,"synthetic_B":1597},"features":[{"basis":"one_closed","contig":"synthetic_A","end":644,"start":603,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":644,"start":603,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":891,"start":818,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":340,"start":305,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1200,"start":1166,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1244,"start":1174,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1135,"start":1030,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":644,"start":602,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":51},{"feature_index":1,"overlap_bases":49}],"query_bed":[160,211],"query_length":51,"union_overlap_bases":51},"family":"nested","fingerprint":"ba401048422820675d79b35af9b927dba4ad117bef0304bbed40d163637c1e19","group_id":"ba401048422820675d79b35af9b927dba4ad117bef0304bbed40d163637c1e19","id":"INTERVALS-0011336","index":11336,"input":{"contigs":{"synthetic_A":1009,"synthetic_B":1610},"features":[{"basis":"one_closed","contig":"synthetic_B","end":216,"start":156,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":210,"start":161,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":222,"start":217,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":293,"start":255,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":332,"start":261,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":211,"start":161,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[459,473],"query_length":14,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"eeaf74404526d90125e5da9ee981ced9067371841fdffc6fa8428313d628e222","group_id":"eeaf74404526d90125e5da9ee981ced9067371841fdffc6fa8428313d628e222","id":"INTERVALS-0011345","index":11345,"input":{"contigs":{"synthetic_A":933,"synthetic_B":1398},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":459,"start":442,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":494,"start":473,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":84,"start":76,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":798,"start":698,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":930,"start":918,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":506,"start":489,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":139,"start":128,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":157,"start":74,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1088,"start":988,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":896,"start":890,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":328,"start":293,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":58,"start":28,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":473,"start":459,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":64},{"feature_index":2,"overlap_bases":2},{"feature_index":6,"overlap_bases":18}],"query_bed":[553,618],"query_length":65,"union_overlap_bases":65},"family":"overlapping_blocks","fingerprint":"f3652fe80363c9e5daa0578ce90b0451d2074f37e41b407ad4290b9b88ec0e84","group_id":"f3652fe80363c9e5daa0578ce90b0451d2074f37e41b407ad4290b9b88ec0e84","id":"INTERVALS-0011352","index":11352,"input":{"contigs":{"synthetic_A":1197,"synthetic_B":1174},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":556,"start":550,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":618,"start":554,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":621,"start":616,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1039,"start":951,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":448,"start":391,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":139,"start":126,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":709,"start":601,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":924,"start":843,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":61,"start":22,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":618,"start":553,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":43}],"query_bed":[721,764],"query_length":43,"union_overlap_bases":43},"family":"stranded","fingerprint":"5c21332a75be3fb9bf25a7add83f35e2618e51ca7abf6de331b69f3072fdf2d7","group_id":"5c21332a75be3fb9bf25a7add83f35e2618e51ca7abf6de331b69f3072fdf2d7","id":"INTERVALS-0011373","index":11373,"input":{"contigs":{"synthetic_A":969,"synthetic_B":754},"features":[{"basis":"one_closed","contig":"synthetic_A","end":764,"start":722,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":764,"start":722,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":374,"start":337,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":506,"start":471,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":96,"start":19,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":76,"start":65,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":668,"start":618,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":597,"start":576,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":689,"start":605,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":764,"start":722,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1164,1219],"query_length":55,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"dd9e85f6a0f0de1687923da1607be8ecfda42411d752839bc6fd700a656f0835","group_id":"dd9e85f6a0f0de1687923da1607be8ecfda42411d752839bc6fd700a656f0835","id":"INTERVALS-0011390","index":11390,"input":{"contigs":{"synthetic_A":1530,"synthetic_B":1465},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1164,"start":1159,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1259,"start":1220,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1315,"start":1218,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":530,"start":485,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":615,"start":560,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1219,"start":1164,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":51}],"query_bed":[531,582],"query_length":51,"union_overlap_bases":51},"family":"stranded","fingerprint":"0a04555e5306978e11f679155b4fdbf6a72b41b8929620aa76a4ecaceb1f289b","group_id":"0a04555e5306978e11f679155b4fdbf6a72b41b8929620aa76a4ecaceb1f289b","id":"INTERVALS-0011393","index":11393,"input":{"contigs":{"synthetic_A":1463,"synthetic_B":1379},"features":[{"basis":"one_closed","contig":"synthetic_A","end":582,"start":532,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":582,"start":532,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1072,"start":998,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":348,"start":310,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1140,"start":1057,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1092,"start":1056,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":849,"start":841,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":382,"start":346,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":446,"start":356,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":786,"start":747,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":468,"start":410,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1214,"start":1200,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":582,"start":532,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":76},{"feature_index":2,"overlap_bases":2}],"query_bed":[208,285],"query_length":77,"union_overlap_bases":77},"family":"overlapping_blocks","fingerprint":"85ecf23e389d9a9fbcbad304fd345ba4234182f3f333e821cc7febe2b30ffa51","group_id":"85ecf23e389d9a9fbcbad304fd345ba4234182f3f333e821cc7febe2b30ffa51","id":"INTERVALS-0011412","index":11412,"input":{"contigs":{"synthetic_A":1100,"synthetic_B":1626},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":211,"start":205,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":285,"start":209,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":288,"start":283,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":803,"start":777,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":713,"start":626,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":883,"start":828,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":185,"start":115,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":895,"start":792,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":252,"start":140,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":661,"start":574,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":325,"start":249,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":938,"start":866,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":285,"start":209,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":54},{"feature_index":1,"overlap_bases":52},{"feature_index":5,"overlap_bases":36}],"query_bed":[798,852],"query_length":54,"union_overlap_bases":54},"family":"nested","fingerprint":"e84a79eccd782d0c486301d03d05b6b39ed7d017bf4241a99d54e312e11259cf","group_id":"e84a79eccd782d0c486301d03d05b6b39ed7d017bf4241a99d54e312e11259cf","id":"INTERVALS-0011421","index":11421,"input":{"contigs":{"synthetic_A":1698,"synthetic_B":1646},"features":[{"basis":"one_closed","contig":"synthetic_B","end":857,"start":794,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":851,"start":800,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":703,"start":644,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":299,"start":219,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":109,"start":21,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":834,"start":789,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1093,"start":1091,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":308,"start":262,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1446,"start":1435,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":939,"start":822,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":852,"start":798,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":70}],"query_bed":[298,368],"query_length":70,"union_overlap_bases":70},"family":"coordinate_conversion","fingerprint":"804c7c9651c25cc90f722481891ae8035f018f65b58c077767a60996a5688d8b","group_id":"804c7c9651c25cc90f722481891ae8035f018f65b58c077767a60996a5688d8b","id":"INTERVALS-0011444","index":11444,"input":{"contigs":{"synthetic_A":1208,"synthetic_B":1351},"features":[{"basis":"one_closed","contig":"synthetic_B","end":368,"start":299,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":618,"start":585,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1114,"start":1112,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":652,"start":590,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":809,"start":696,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":387,"start":301,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":859,"start":835,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1000,"start":998,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":368,"start":299,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":70},{"feature_index":1,"overlap_bases":68},{"feature_index":8,"overlap_bases":70}],"query_bed":[839,909],"query_length":70,"union_overlap_bases":70},"family":"nested","fingerprint":"47673bbe443979153f57add4770ca8fed5cbd5d3d66bdda7d6c3e8976fe0700c","group_id":"47673bbe443979153f57add4770ca8fed5cbd5d3d66bdda7d6c3e8976fe0700c","id":"INTERVALS-0011446","index":11446,"input":{"contigs":{"synthetic_A":1751,"synthetic_B":1035},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":914,"start":834,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":908,"start":840,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1657,"start":1584,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":200,"start":89,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":709,"start":634,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1155,"start":1068,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":619,"start":589,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":194,"start":112,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":915,"start":814,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":655,"start":550,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":601,"start":521,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":749,"start":657,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":909,"start":840,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":79}],"query_bed":[1076,1155],"query_length":79,"union_overlap_bases":79},"family":"stranded","fingerprint":"a9e9d28868acd9ca8b05ee443c2d0e10c3e18e953eaf9c8a6ab88cddbfbaea40","group_id":"a9e9d28868acd9ca8b05ee443c2d0e10c3e18e953eaf9c8a6ab88cddbfbaea40","id":"INTERVALS-0011448","index":11448,"input":{"contigs":{"synthetic_A":606,"synthetic_B":1390},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1155,"start":1076,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1155,"start":1076,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":473,"start":390,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":325,"start":225,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":567,"start":536,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":230,"start":201,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1267,"start":1182,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":161,"start":99,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":382,"start":270,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1155,"start":1077,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":57},{"feature_index":1,"overlap_bases":55}],"query_bed":[414,471],"query_length":57,"union_overlap_bases":57},"family":"nested","fingerprint":"fceb12bc6ade37c7c33d387703131afdef72c6ecd912ce83cd71930a7aa63fff","group_id":"fceb12bc6ade37c7c33d387703131afdef72c6ecd912ce83cd71930a7aa63fff","id":"INTERVALS-0011466","index":11466,"input":{"contigs":{"synthetic_A":974,"synthetic_B":1235},"features":[{"basis":"one_closed","contig":"synthetic_B","end":476,"start":410,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":470,"start":416,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":897,"start":785,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":614,"start":590,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":333,"start":312,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":278,"start":216,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":471,"start":414,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":3,"overlap_bases":5}],"query_bed":[506,542],"query_length":36,"union_overlap_bases":5},"family":"touching_boundary","fingerprint":"d611b72c6374fbd6c7f20c7ebbd8d0eb2366e2729aa802f97b6f27be4901441a","group_id":"d611b72c6374fbd6c7f20c7ebbd8d0eb2366e2729aa802f97b6f27be4901441a","id":"INTERVALS-0011470","index":11470,"input":{"contigs":{"synthetic_A":958,"synthetic_B":1672},"features":[{"basis":"one_closed","contig":"synthetic_B","end":506,"start":495,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":564,"start":542,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":342,"start":234,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":528,"start":523,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":820,"start":792,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":152,"start":138,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":783,"start":751,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":363,"start":285,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1308,"start":1189,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1572,"start":1474,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":542,"start":507,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":27},{"feature_index":1,"overlap_bases":25}],"query_bed":[325,352],"query_length":27,"union_overlap_bases":27},"family":"nested","fingerprint":"2875795abb33ebd9bcaf6c4bb622f2e12b9daf5c2e98c55e1a89fc8d2cd9d1cc","group_id":"2875795abb33ebd9bcaf6c4bb622f2e12b9daf5c2e98c55e1a89fc8d2cd9d1cc","id":"INTERVALS-0011471","index":11471,"input":{"contigs":{"synthetic_A":806,"synthetic_B":1246},"features":[{"basis":"one_closed","contig":"synthetic_B","end":357,"start":321,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":351,"start":326,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1089,"start":1082,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":711,"start":680,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":525,"start":523,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":318,"start":231,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":392,"start":390,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":352,"start":326,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":56},{"feature_index":2,"overlap_bases":2}],"query_bed":[419,476],"query_length":57,"union_overlap_bases":57},"family":"overlapping_blocks","fingerprint":"c932e6b60537f74c126a68f6c190c7ae7936dde903f2251606f8f007ff9a83c0","group_id":"c932e6b60537f74c126a68f6c190c7ae7936dde903f2251606f8f007ff9a83c0","id":"INTERVALS-0011472","index":11472,"input":{"contigs":{"synthetic_A":1566,"synthetic_B":632},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":422,"start":416,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":476,"start":421,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":479,"start":474,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":225,"start":144,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":733,"start":644,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":954,"start":909,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":810,"start":721,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":141,"start":112,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":476,"start":419,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":23},{"feature_index":1,"overlap_bases":21}],"query_bed":[1065,1088],"query_length":23,"union_overlap_bases":23},"family":"nested","fingerprint":"564590ea609820cdc3b72ae6e6822fe4d35f766cbd1a2f5d10b5dfb8ca368214","group_id":"564590ea609820cdc3b72ae6e6822fe4d35f766cbd1a2f5d10b5dfb8ca368214","id":"INTERVALS-0011476","index":11476,"input":{"contigs":{"synthetic_A":784,"synthetic_B":1332},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1093,"start":1061,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1087,"start":1066,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":338,"start":334,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":836,"start":784,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":925,"start":901,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":266,"start":156,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1088,"start":1066,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":59},{"feature_index":1,"overlap_bases":57}],"query_bed":[755,814],"query_length":59,"union_overlap_bases":59},"family":"nested","fingerprint":"58b2a200d1258090265205abfb814def9d6b1ca47a667e203d37467d91a0da34","group_id":"58b2a200d1258090265205abfb814def9d6b1ca47a667e203d37467d91a0da34","id":"INTERVALS-0011481","index":11481,"input":{"contigs":{"synthetic_A":1348,"synthetic_B":882},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":819,"start":750,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":813,"start":757,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":641,"start":622,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":312,"start":273,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":728,"start":631,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":803,"start":708,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":713,"start":636,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":209,"start":181,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":131,"start":108,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":112,"start":93,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1004,"start":982,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":814,"start":755,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":78},{"feature_index":2,"overlap_bases":2}],"query_bed":[926,1005],"query_length":79,"union_overlap_bases":79},"family":"overlapping_blocks","fingerprint":"a6a6d346777d1c2b49dfbfa934016fcaa10bc9ee1a8bb5a9cc2bbb9eab39d769","group_id":"a6a6d346777d1c2b49dfbfa934016fcaa10bc9ee1a8bb5a9cc2bbb9eab39d769","id":"INTERVALS-0011487","index":11487,"input":{"contigs":{"synthetic_A":1418,"synthetic_B":1742},"features":[{"basis":"one_closed","contig":"synthetic_A","end":929,"start":924,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1005,"start":928,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1008,"start":1003,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1009,"start":989,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":391,"start":349,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1711,"start":1591,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":575,"start":492,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1005,"start":927,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[515,529],"query_length":14,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"be685fd672c1107c46d48e03393d9eabd1c76144a00e3d183c8d13b5807dff28","group_id":"be685fd672c1107c46d48e03393d9eabd1c76144a00e3d183c8d13b5807dff28","id":"INTERVALS-0011505","index":11505,"input":{"contigs":{"synthetic_A":1189,"synthetic_B":773},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":515,"start":502,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":558,"start":529,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":178,"start":72,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":126,"start":9,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":60,"start":38,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":121,"start":56,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":885,"start":855,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":118,"start":34,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":129,"start":68,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":593,"start":542,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":529,"start":516,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73}],"query_bed":[295,368],"query_length":73,"union_overlap_bases":73},"family":"coordinate_conversion","fingerprint":"390a05a69cbb1e1132bd1b41eaa1f621db8ee8baad785a7d5672c107bd2d91e1","group_id":"390a05a69cbb1e1132bd1b41eaa1f621db8ee8baad785a7d5672c107bd2d91e1","id":"INTERVALS-0011514","index":11514,"input":{"contigs":{"synthetic_A":1276,"synthetic_B":643},"features":[{"basis":"one_closed","contig":"synthetic_B","end":368,"start":296,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":128,"start":120,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1004,"start":982,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":338,"start":254,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":81,"start":67,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":368,"start":296,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":30}],"query_bed":[268,298],"query_length":30,"union_overlap_bases":30},"family":"stranded","fingerprint":"f44e53309f0656dbc97fe7e81e56664d9edd71cd72ac7f401fba432365f93d3d","group_id":"f44e53309f0656dbc97fe7e81e56664d9edd71cd72ac7f401fba432365f93d3d","id":"INTERVALS-0011518","index":11518,"input":{"contigs":{"synthetic_A":1378,"synthetic_B":766},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":298,"start":268,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":298,"start":269,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":919,"start":822,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":97,"start":5,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":44,"start":4,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":223,"start":111,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":390,"start":364,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1221,"start":1102,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1033,"start":917,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":80,"start":79,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":623,"start":605,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":777,"start":737,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":298,"start":268,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":41}],"query_bed":[29,70],"query_length":41,"union_overlap_bases":41},"family":"stranded","fingerprint":"4c058964cd16bab3f725bdaf881df8a8a2098c3428f9432b8568f744ac4aa01c","group_id":"4c058964cd16bab3f725bdaf881df8a8a2098c3428f9432b8568f744ac4aa01c","id":"INTERVALS-0011523","index":11523,"input":{"contigs":{"synthetic_A":1387,"synthetic_B":1677},"features":[{"basis":"one_closed","contig":"synthetic_B","end":70,"start":30,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":70,"start":29,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1191,"start":1085,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":755,"start":641,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":316,"start":286,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":159,"start":89,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":842,"start":722,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":70,"start":30,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":75}],"query_bed":[195,270],"query_length":75,"union_overlap_bases":75},"family":"coordinate_conversion","fingerprint":"509ad8766332dd1229d0cdaf9078dc7dde0d7b3563451e0f7041429d69597288","group_id":"509ad8766332dd1229d0cdaf9078dc7dde0d7b3563451e0f7041429d69597288","id":"INTERVALS-0011524","index":11524,"input":{"contigs":{"synthetic_A":1562,"synthetic_B":1537},"features":[{"basis":"one_closed","contig":"synthetic_B","end":270,"start":196,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":751,"start":658,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":326,"start":310,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1172,"start":1088,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1344,"start":1323,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":689,"start":590,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1391,"start":1370,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":873,"start":760,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":361,"start":359,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":693,"start":640,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":270,"start":196,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":66},{"feature_index":1,"overlap_bases":64}],"query_bed":[436,502],"query_length":66,"union_overlap_bases":66},"family":"nested","fingerprint":"c35fc8da18e37a63de747da647a511b3811380af15c95bd698d8f6bf7a98b8f2","group_id":"c35fc8da18e37a63de747da647a511b3811380af15c95bd698d8f6bf7a98b8f2","id":"INTERVALS-0011526","index":11526,"input":{"contigs":{"synthetic_A":1158,"synthetic_B":791},"features":[{"basis":"one_closed","contig":"synthetic_A","end":507,"start":432,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":501,"start":438,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":389,"start":287,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":674,"start":625,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":248,"start":185,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":502,"start":437,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56},{"feature_index":1,"overlap_bases":54}],"query_bed":[358,414],"query_length":56,"union_overlap_bases":56},"family":"nested","fingerprint":"e76925503dac0d120bfbd628d6aae45acb211aa7c67f7bbb17dbf8cd9647d46c","group_id":"e76925503dac0d120bfbd628d6aae45acb211aa7c67f7bbb17dbf8cd9647d46c","id":"INTERVALS-0011531","index":11531,"input":{"contigs":{"synthetic_A":968,"synthetic_B":1738},"features":[{"basis":"one_closed","contig":"synthetic_A","end":419,"start":354,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":413,"start":359,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":638,"start":550,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":483,"start":445,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":247,"start":152,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":608,"start":539,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":414,"start":359,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":52}],"query_bed":[858,910],"query_length":52,"union_overlap_bases":52},"family":"coordinate_conversion","fingerprint":"6addb258298b25939c4c10e96223b0b578fadfcb910091cf1915c68467c201b6","group_id":"6addb258298b25939c4c10e96223b0b578fadfcb910091cf1915c68467c201b6","id":"INTERVALS-0011549","index":11549,"input":{"contigs":{"synthetic_A":1324,"synthetic_B":805},"features":[{"basis":"one_closed","contig":"synthetic_A","end":910,"start":859,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":563,"start":502,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":645,"start":597,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":523,"start":471,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":239,"start":237,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":518,"start":418,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":346,"start":233,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":473,"start":365,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":910,"start":859,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":6},{"feature_index":1,"overlap_bases":4},{"feature_index":2,"overlap_bases":6},{"feature_index":4,"overlap_bases":6}],"query_bed":[683,689],"query_length":6,"union_overlap_bases":6},"family":"nested","fingerprint":"5bdbfc38d62c8c569b29619f92e4ff7b6e6e9ec564b5fd4b9e8770158b2277da","group_id":"5bdbfc38d62c8c569b29619f92e4ff7b6e6e9ec564b5fd4b9e8770158b2277da","id":"INTERVALS-0011556","index":11556,"input":{"contigs":{"synthetic_A":810,"synthetic_B":1023},"features":[{"basis":"one_closed","contig":"synthetic_B","end":694,"start":679,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":688,"start":684,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":746,"start":627,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":536,"start":508,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":729,"start":624,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":621,"start":598,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":242,"start":199,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":479,"start":468,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":202,"start":193,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":47,"start":29,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":689,"start":683,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":43},{"feature_index":2,"overlap_bases":2}],"query_bed":[691,735],"query_length":44,"union_overlap_bases":44},"family":"overlapping_blocks","fingerprint":"ce8279ece50647b0b68e37fee4946325bd5e525e94780d20106f1d467f103b0a","group_id":"ce8279ece50647b0b68e37fee4946325bd5e525e94780d20106f1d467f103b0a","id":"INTERVALS-0011567","index":11567,"input":{"contigs":{"synthetic_A":1074,"synthetic_B":1315},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":694,"start":688,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":735,"start":692,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":738,"start":734,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":380,"start":327,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":599,"start":555,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":907,"start":803,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":153,"start":112,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":398,"start":376,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":735,"start":691,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":42},{"feature_index":2,"overlap_bases":2}],"query_bed":[490,533],"query_length":43,"union_overlap_bases":43},"family":"overlapping_blocks","fingerprint":"730351cc031e4e58d9b1445ea9a7bc624e14fc869e82435f9fb56c8a9fba1f9a","group_id":"730351cc031e4e58d9b1445ea9a7bc624e14fc869e82435f9fb56c8a9fba1f9a","id":"INTERVALS-0011572","index":11572,"input":{"contigs":{"synthetic_A":1619,"synthetic_B":1438},"features":[{"basis":"one_closed","contig":"synthetic_A","end":493,"start":488,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":533,"start":491,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":536,"start":531,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":475,"start":406,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":454,"start":441,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1398,"start":1395,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1026,"start":1016,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":533,"start":490,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":59},{"feature_index":1,"overlap_bases":57}],"query_bed":[869,928],"query_length":59,"union_overlap_bases":59},"family":"nested","fingerprint":"f3517c78d34e4dc3c733e08f32c004479188b7ec9ff769eb3c53feb9e66aaf7b","group_id":"f3517c78d34e4dc3c733e08f32c004479188b7ec9ff769eb3c53feb9e66aaf7b","id":"INTERVALS-0011596","index":11596,"input":{"contigs":{"synthetic_A":1720,"synthetic_B":1048},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":933,"start":864,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":927,"start":871,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":742,"start":674,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":951,"start":861,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":864,"start":851,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":877,"start":860,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1513,"start":1394,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":928,"start":870,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":60},{"feature_index":1,"overlap_bases":58}],"query_bed":[233,293],"query_length":60,"union_overlap_bases":60},"family":"nested","fingerprint":"764cc8d625109dcad2744014720486429eb8490fd6e193565239b25b6b513b9c","group_id":"764cc8d625109dcad2744014720486429eb8490fd6e193565239b25b6b513b9c","id":"INTERVALS-0011621","index":11621,"input":{"contigs":{"synthetic_A":820,"synthetic_B":822},"features":[{"basis":"one_closed","contig":"synthetic_A","end":298,"start":229,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":292,"start":235,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":230,"start":149,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":551,"start":446,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":246,"start":193,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":418,"start":347,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":737,"start":673,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":293,"start":234,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[405,447],"query_length":42,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"158232fce9b25ba16f34e68cf83cc539ea0c305fcc27bf2bfa07d36267d70e1b","group_id":"158232fce9b25ba16f34e68cf83cc539ea0c305fcc27bf2bfa07d36267d70e1b","id":"INTERVALS-0011630","index":11630,"input":{"contigs":{"synthetic_A":799,"synthetic_B":970},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":405,"start":401,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":471,"start":447,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":192,"start":162,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":115,"start":16,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":314,"start":296,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":517,"start":501,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":392,"start":354,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":384,"start":291,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":447,"start":405,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":69},{"feature_index":2,"overlap_bases":2},{"feature_index":5,"overlap_bases":3}],"query_bed":[351,421],"query_length":70,"union_overlap_bases":70},"family":"overlapping_blocks","fingerprint":"38e51c0a9d09556a39fe6c41e19889d5c99e23ac2f6e98cd777e5cf2b8281039","group_id":"38e51c0a9d09556a39fe6c41e19889d5c99e23ac2f6e98cd777e5cf2b8281039","id":"INTERVALS-0011642","index":11642,"input":{"contigs":{"synthetic_A":1210,"synthetic_B":873},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":354,"start":348,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":421,"start":352,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":424,"start":420,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":198,"start":135,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":577,"start":525,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":354,"start":347,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":378,"start":375,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":497,"start":427,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":119,"start":43,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1023,"start":1007,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":149,"start":60,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":421,"start":352,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":5}],"query_bed":[30,35],"query_length":5,"union_overlap_bases":5},"family":"coordinate_conversion","fingerprint":"c6082f00d5ddc6de8306abf14417ce29d750c7c55749c46411f7a68b791476eb","group_id":"c6082f00d5ddc6de8306abf14417ce29d750c7c55749c46411f7a68b791476eb","id":"INTERVALS-0011644","index":11644,"input":{"contigs":{"synthetic_A":919,"synthetic_B":1426},"features":[{"basis":"one_closed","contig":"synthetic_A","end":35,"start":31,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":315,"start":309,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":434,"start":409,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1208,"start":1128,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1132,"start":1118,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":686,"start":643,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":35,"start":31,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":57},{"feature_index":1,"overlap_bases":55},{"feature_index":7,"overlap_bases":49}],"query_bed":[83,140],"query_length":57,"union_overlap_bases":57},"family":"nested","fingerprint":"f8cf7e3e481bd938bce5ace7eac8d94f5d5cbeff2f53a79d73b46ef6b19e0723","group_id":"f8cf7e3e481bd938bce5ace7eac8d94f5d5cbeff2f53a79d73b46ef6b19e0723","id":"INTERVALS-0011651","index":11651,"input":{"contigs":{"synthetic_A":933,"synthetic_B":604},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":145,"start":78,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":139,"start":84,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":238,"start":233,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":452,"start":451,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":496,"start":472,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":304,"start":191,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":307,"start":247,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":146,"start":92,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":140,"start":84,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[127,156],"query_length":29,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"b28d37c277f9461766378ee1f5816f6aeb3950d6384b6751060e3c5d8ae8749f","group_id":"b28d37c277f9461766378ee1f5816f6aeb3950d6384b6751060e3c5d8ae8749f","id":"INTERVALS-0011655","index":11655,"input":{"contigs":{"synthetic_A":890,"synthetic_B":920},"features":[{"basis":"one_closed","contig":"synthetic_A","end":127,"start":115,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":196,"start":156,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":715,"start":651,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":809,"start":739,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":499,"start":423,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":540,"start":508,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":700,"start":644,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":156,"start":128,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":53},{"feature_index":1,"overlap_bases":51}],"query_bed":[632,685],"query_length":53,"union_overlap_bases":53},"family":"nested","fingerprint":"6868302a73c0318a7d14f5c2496083ad37f756dd8f56a385cd19e67e8b98f013","group_id":"6868302a73c0318a7d14f5c2496083ad37f756dd8f56a385cd19e67e8b98f013","id":"INTERVALS-0011666","index":11666,"input":{"contigs":{"synthetic_A":1737,"synthetic_B":1510},"features":[{"basis":"one_closed","contig":"synthetic_B","end":690,"start":628,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":684,"start":634,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":496,"start":445,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1340,"start":1256,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":978,"start":968,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1011,"start":995,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":140,"start":132,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":287,"start":175,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1053,"start":950,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":685,"start":632,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":16}],"query_bed":[253,269],"query_length":16,"union_overlap_bases":16},"family":"stranded","fingerprint":"3e805846c03ea29f6dec05076ccbf179b0360766504917aeee3b0120f7ecfa82","group_id":"3e805846c03ea29f6dec05076ccbf179b0360766504917aeee3b0120f7ecfa82","id":"INTERVALS-0011688","index":11688,"input":{"contigs":{"synthetic_A":962,"synthetic_B":1027},"features":[{"basis":"one_closed","contig":"synthetic_B","end":269,"start":254,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":269,"start":253,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":516,"start":397,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":757,"start":685,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":144,"start":129,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":487,"start":413,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":744,"start":739,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":269,"start":254,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":2,"overlap_bases":20},{"feature_index":3,"overlap_bases":24}],"query_bed":[215,239],"query_length":24,"union_overlap_bases":24},"family":"touching_boundary","fingerprint":"0504780e26fa58743139f00cbb35061c632f485ec8c4f2e7a77d1177e689b073","group_id":"0504780e26fa58743139f00cbb35061c632f485ec8c4f2e7a77d1177e689b073","id":"INTERVALS-0011690","index":11690,"input":{"contigs":{"synthetic_A":714,"synthetic_B":1129},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":215,"start":206,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":255,"start":239,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":251,"start":219,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":261,"start":207,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":276,"start":266,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":541,"start":514,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":834,"start":813,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":190,"start":76,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":271,"start":271,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":600,"start":586,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":677,"start":599,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":239,"start":216,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":39},{"feature_index":1,"overlap_bases":37},{"feature_index":6,"overlap_bases":22}],"query_bed":[44,83],"query_length":39,"union_overlap_bases":39},"family":"nested","fingerprint":"1e83a2e6b627b80c9c1b2bdd380969769856948ebf47a80251081ac44d9610fe","group_id":"1e83a2e6b627b80c9c1b2bdd380969769856948ebf47a80251081ac44d9610fe","id":"INTERVALS-0011691","index":11691,"input":{"contigs":{"synthetic_A":1073,"synthetic_B":657},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":88,"start":39,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":82,"start":46,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":265,"start":234,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":256,"start":173,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":79,"start":1,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":658,"start":656,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":77,"start":56,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":38,"start":35,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":396,"start":284,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":83,"start":44,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":41},{"feature_index":2,"overlap_bases":2},{"feature_index":7,"overlap_bases":9}],"query_bed":[371,413],"query_length":42,"union_overlap_bases":42},"family":"overlapping_blocks","fingerprint":"57c0d07e7c54126a8978226782f97509878d74d752fd7ab273c38ec8c64a88dc","group_id":"57c0d07e7c54126a8978226782f97509878d74d752fd7ab273c38ec8c64a88dc","id":"INTERVALS-0011697","index":11697,"input":{"contigs":{"synthetic_A":1791,"synthetic_B":1570},"features":[{"basis":"one_closed","contig":"synthetic_A","end":374,"start":369,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":413,"start":372,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":416,"start":411,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":838,"start":805,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":943,"start":909,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":712,"start":702,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":490,"start":483,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":380,"start":322,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":413,"start":371,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":11},{"feature_index":1,"overlap_bases":9},{"feature_index":4,"overlap_bases":11}],"query_bed":[478,489],"query_length":11,"union_overlap_bases":11},"family":"nested","fingerprint":"85d825b6258ed0864ec27083998d0812e6a7ac6e4e52bdcd819278d7420d1e89","group_id":"85d825b6258ed0864ec27083998d0812e6a7ac6e4e52bdcd819278d7420d1e89","id":"INTERVALS-0011706","index":11706,"input":{"contigs":{"synthetic_A":1013,"synthetic_B":961},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":494,"start":473,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":488,"start":480,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":928,"start":874,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":322,"start":307,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":546,"start":446,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":467,"start":440,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":751,"start":717,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":179,"start":151,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":307,"start":254,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":637,"start":588,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":593,"start":485,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":489,"start":479,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[473,511],"query_length":38,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"9173ae2c98ebe32da9b8bf493c03ffd4d8a7db3b640f5b192f612ddae2ec5dc6","group_id":"9173ae2c98ebe32da9b8bf493c03ffd4d8a7db3b640f5b192f612ddae2ec5dc6","id":"INTERVALS-0011710","index":11710,"input":{"contigs":{"synthetic_A":687,"synthetic_B":1755},"features":[{"basis":"one_closed","contig":"synthetic_A","end":473,"start":470,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":549,"start":511,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1502,"start":1439,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1285,"start":1190,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":140,"start":85,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1047,"start":1014,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":510,"start":475,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1476,"start":1398,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":511,"start":474,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":54}],"query_bed":[273,327],"query_length":54,"union_overlap_bases":54},"family":"coordinate_conversion","fingerprint":"ed5d2d944e4127fbacad1893ed5734646d0c2c402baff33a46ed3b932afeb562","group_id":"ed5d2d944e4127fbacad1893ed5734646d0c2c402baff33a46ed3b932afeb562","id":"INTERVALS-0011714","index":11714,"input":{"contigs":{"synthetic_A":1747,"synthetic_B":1075},"features":[{"basis":"one_closed","contig":"synthetic_A","end":327,"start":274,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1547,"start":1432,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":274,"start":235,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":259,"start":205,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":948,"start":863,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":974,"start":857,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":327,"start":274,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":57},{"feature_index":2,"overlap_bases":10}],"query_bed":[533,590],"query_length":57,"union_overlap_bases":57},"family":"stranded","fingerprint":"336f9f7ac7aba0390bbc7af8b0177b4e49def0fb9e194f207632b4935f75a25c","group_id":"336f9f7ac7aba0390bbc7af8b0177b4e49def0fb9e194f207632b4935f75a25c","id":"INTERVALS-0011718","index":11718,"input":{"contigs":{"synthetic_A":1052,"synthetic_B":968},"features":[{"basis":"one_closed","contig":"synthetic_B","end":590,"start":534,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":590,"start":534,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":654,"start":580,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":504,"start":410,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":407,"start":374,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":410,"start":401,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":114,"start":65,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":778,"start":668,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":421,"start":319,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":590,"start":533,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[293,359],"query_length":66,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"7425d5c0f1e77ea60b18e2e3215f9b3bf155419e1256356981cd66370b38991d","group_id":"7425d5c0f1e77ea60b18e2e3215f9b3bf155419e1256356981cd66370b38991d","id":"INTERVALS-0011725","index":11725,"input":{"contigs":{"synthetic_A":636,"synthetic_B":1452},"features":[{"basis":"one_closed","contig":"synthetic_B","end":293,"start":279,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":375,"start":360,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1053,"start":962,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":101,"start":79,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":587,"start":510,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":123,"start":24,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":13,"start":1,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":417,"start":355,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1331,"start":1277,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":172,"start":91,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":462,"start":372,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":359,"start":293,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[780,805],"query_length":25,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"84ba580233e00ef7b48b7692eccbb8af871071be97d37f019e8bbdf9dc7ccddf","group_id":"84ba580233e00ef7b48b7692eccbb8af871071be97d37f019e8bbdf9dc7ccddf","id":"INTERVALS-0011745","index":11745,"input":{"contigs":{"synthetic_A":667,"synthetic_B":1298},"features":[{"basis":"one_closed","contig":"synthetic_B","end":780,"start":762,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":839,"start":805,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":481,"start":429,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":201,"start":102,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":342,"start":241,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":721,"start":662,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1214,"start":1165,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1083,"start":1045,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":805,"start":780,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":55}],"query_bed":[1270,1325],"query_length":55,"union_overlap_bases":55},"family":"coordinate_conversion","fingerprint":"e5843be44c0d092f7339f58deedc7a616472e5183d94bae4543adcd65361c928","group_id":"e5843be44c0d092f7339f58deedc7a616472e5183d94bae4543adcd65361c928","id":"INTERVALS-0011759","index":11759,"input":{"contigs":{"synthetic_A":1589,"synthetic_B":829},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1325,"start":1271,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":242,"start":188,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":208,"start":174,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":84,"start":63,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":567,"start":452,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":831,"start":831,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":131,"start":17,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1325,"start":1271,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":23}],"query_bed":[624,647],"query_length":23,"union_overlap_bases":23},"family":"stranded","fingerprint":"178bff60f394bb382dfbe3632123cf3b2956dede8ef7cd066f431ab6dc026158","group_id":"178bff60f394bb382dfbe3632123cf3b2956dede8ef7cd066f431ab6dc026158","id":"INTERVALS-0011763","index":11763,"input":{"contigs":{"synthetic_A":1732,"synthetic_B":1791},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":647,"start":624,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":647,"start":624,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1721,"start":1602,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":790,"start":693,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1294,"start":1209,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1675,"start":1645,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":80,"start":30,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1034,"start":967,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":453,"start":444,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":660,"start":609,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":533,"start":486,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":978,"start":920,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":647,"start":625,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1254,1286],"query_length":32,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"b28fbc72e841ff8661a3b2412673923b37ef41fd760bc6b8bec47bdccca88e23","group_id":"b28fbc72e841ff8661a3b2412673923b37ef41fd760bc6b8bec47bdccca88e23","id":"INTERVALS-0011775","index":11775,"input":{"contigs":{"synthetic_A":945,"synthetic_B":1728},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1254,"start":1250,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1307,"start":1287,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":747,"start":710,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":630,"start":569,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":324,"start":320,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":693,"start":663,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":112,"start":112,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":84,"start":19,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":161,"start":137,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1286,"start":1254,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[403,478],"query_length":75,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"88712f3e9987a0d151526788bccbec538d5a7c3979aa86df46375656416f056c","group_id":"88712f3e9987a0d151526788bccbec538d5a7c3979aa86df46375656416f056c","id":"INTERVALS-0011780","index":11780,"input":{"contigs":{"synthetic_A":1406,"synthetic_B":1342},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":403,"start":402,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":492,"start":479,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1085,"start":1041,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":341,"start":235,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1023,"start":1007,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":617,"start":594,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":377,"start":328,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":795,"start":692,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1185,"start":1078,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":460,"start":364,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":811,"start":736,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":478,"start":404,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":63}],"query_bed":[1427,1490],"query_length":63,"union_overlap_bases":63},"family":"coordinate_conversion","fingerprint":"7ae0bfceb31b0b87d1b2c2328a2e104a8d50ca9cd3bdf2af2d6097950fe1636c","group_id":"7ae0bfceb31b0b87d1b2c2328a2e104a8d50ca9cd3bdf2af2d6097950fe1636c","id":"INTERVALS-0011784","index":11784,"input":{"contigs":{"synthetic_A":1716,"synthetic_B":1372},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1490,"start":1428,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":241,"start":236,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1374,"start":1314,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":302,"start":255,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1189,"start":1132,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1490,"start":1428,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":77}],"query_bed":[265,342],"query_length":77,"union_overlap_bases":77},"family":"coordinate_conversion","fingerprint":"f52ce384d70c16f6b58e4261e930c6925d512eede6436f42ede96cebd7f30e86","group_id":"f52ce384d70c16f6b58e4261e930c6925d512eede6436f42ede96cebd7f30e86","id":"INTERVALS-0011794","index":11794,"input":{"contigs":{"synthetic_A":1159,"synthetic_B":1024},"features":[{"basis":"one_closed","contig":"synthetic_B","end":342,"start":266,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":138,"start":88,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":793,"start":697,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":631,"start":518,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":480,"start":466,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":558,"start":523,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":788,"start":770,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1117,"start":1028,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":720,"start":715,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":961,"start":870,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":342,"start":266,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":49},{"feature_index":1,"overlap_bases":47},{"feature_index":5,"overlap_bases":31}],"query_bed":[802,851],"query_length":49,"union_overlap_bases":49},"family":"nested","fingerprint":"a07d6f48c99e36c8a5986e9764fb44738d5377b92747261fba8574674d08ad61","group_id":"a07d6f48c99e36c8a5986e9764fb44738d5377b92747261fba8574674d08ad61","id":"INTERVALS-0011796","index":11796,"input":{"contigs":{"synthetic_A":973,"synthetic_B":1794},"features":[{"basis":"one_closed","contig":"synthetic_B","end":856,"start":798,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":850,"start":803,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":710,"start":633,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":723,"start":672,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":642,"start":572,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":843,"start":813,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1761,"start":1653,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":850,"start":743,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":851,"start":802,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":42},{"feature_index":1,"overlap_bases":6}],"query_bed":[213,255],"query_length":42,"union_overlap_bases":42},"family":"coordinate_conversion","fingerprint":"9689b9f6e7553185e49ee0058ef69b62b89a1f81e8eb207d6f41769ac07f4faa","group_id":"9689b9f6e7553185e49ee0058ef69b62b89a1f81e8eb207d6f41769ac07f4faa","id":"INTERVALS-0011814","index":11814,"input":{"contigs":{"synthetic_A":1437,"synthetic_B":1091},"features":[{"basis":"one_closed","contig":"synthetic_B","end":255,"start":214,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":322,"start":250,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":850,"start":804,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":251,"start":204,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":525,"start":442,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":193,"start":138,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":371,"start":266,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1139,"start":1068,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":255,"start":214,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":75},{"feature_index":1,"overlap_bases":73},{"feature_index":3,"overlap_bases":45}],"query_bed":[262,337],"query_length":75,"union_overlap_bases":75},"family":"nested","fingerprint":"6fdd3828058145881b1c02e75913113393c2185afd77a96ee70167d8c3e4ce38","group_id":"6fdd3828058145881b1c02e75913113393c2185afd77a96ee70167d8c3e4ce38","id":"INTERVALS-0011816","index":11816,"input":{"contigs":{"synthetic_A":1288,"synthetic_B":1052},"features":[{"basis":"one_closed","contig":"synthetic_B","end":342,"start":258,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":336,"start":264,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":548,"start":428,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":318,"start":274,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":778,"start":724,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":596,"start":538,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":935,"start":892,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":639,"start":605,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":666,"start":577,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":337,"start":263,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":9}],"query_bed":[52,61],"query_length":9,"union_overlap_bases":9},"family":"stranded","fingerprint":"c6670b7402766018e41f487462b287772889ae7f833e489c08a9c6335f675641","group_id":"c6670b7402766018e41f487462b287772889ae7f833e489c08a9c6335f675641","id":"INTERVALS-0011818","index":11818,"input":{"contigs":{"synthetic_A":1432,"synthetic_B":1677},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":61,"start":52,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":61,"start":53,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1047,"start":1028,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":392,"start":275,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":119,"start":119,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":293,"start":272,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":475,"start":403,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":879,"start":760,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":523,"start":511,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":61,"start":53,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":15}],"query_bed":[545,560],"query_length":15,"union_overlap_bases":15},"family":"stranded","fingerprint":"376ffbe20366ea8d41c9a48bf61669687112a38795ea594cc218f2d8a0f79143","group_id":"376ffbe20366ea8d41c9a48bf61669687112a38795ea594cc218f2d8a0f79143","id":"INTERVALS-0011838","index":11838,"input":{"contigs":{"synthetic_A":1747,"synthetic_B":1712},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":560,"start":545,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":560,"start":545,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":376,"start":276,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":820,"start":809,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":172,"start":146,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1292,"start":1236,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1228,"start":1113,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1487,"start":1374,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":471,"start":411,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":398,"start":363,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":560,"start":546,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":13},{"feature_index":2,"overlap_bases":2}],"query_bed":[33,47],"query_length":14,"union_overlap_bases":14},"family":"overlapping_blocks","fingerprint":"8788c58c7c6645a12b16b95c0a5584bc2b1efbe68aa912c3ff9b480c02affdbc","group_id":"8788c58c7c6645a12b16b95c0a5584bc2b1efbe68aa912c3ff9b480c02affdbc","id":"INTERVALS-0011842","index":11842,"input":{"contigs":{"synthetic_A":1519,"synthetic_B":1302},"features":[{"basis":"one_closed","contig":"synthetic_B","end":36,"start":31,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":47,"start":35,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":50,"start":45,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":310,"start":230,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":625,"start":509,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1015,"start":955,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1004,"start":889,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":821,"start":728,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":47,"start":33,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":35}],"query_bed":[25,60],"query_length":35,"union_overlap_bases":35},"family":"stranded","fingerprint":"d880e1ae8ee62552c186a254012a03b6c3d6066b1b9549ea9752229694b91cac","group_id":"d880e1ae8ee62552c186a254012a03b6c3d6066b1b9549ea9752229694b91cac","id":"INTERVALS-0011853","index":11853,"input":{"contigs":{"synthetic_A":724,"synthetic_B":1483},"features":[{"basis":"one_closed","contig":"synthetic_A","end":60,"start":26,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":60,"start":25,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":227,"start":161,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1253,"start":1162,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1163,"start":1128,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":964,"start":879,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":635,"start":582,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":415,"start":385,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":761,"start":747,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":486,"start":470,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":60,"start":25,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":37},{"feature_index":2,"overlap_bases":2}],"query_bed":[972,1010],"query_length":38,"union_overlap_bases":38},"family":"overlapping_blocks","fingerprint":"53217000649a8b3c5774c3003136aa0a79a52ef17887fa504b42833af9ad2391","group_id":"53217000649a8b3c5774c3003136aa0a79a52ef17887fa504b42833af9ad2391","id":"INTERVALS-0011857","index":11857,"input":{"contigs":{"synthetic_A":628,"synthetic_B":1673},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":975,"start":969,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1010,"start":973,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1013,"start":1009,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":394,"start":363,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1373,"start":1297,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":186,"start":67,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":317,"start":222,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":225,"start":172,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":91,"start":42,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1525,"start":1464,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1010,"start":972,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[21,58],"query_length":37,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e184d3a049acfe8bab071931fc4e35c4dfc9909bbc4a5b8b1bec48b7cbdc442f","group_id":"e184d3a049acfe8bab071931fc4e35c4dfc9909bbc4a5b8b1bec48b7cbdc442f","id":"INTERVALS-0011865","index":11865,"input":{"contigs":{"synthetic_A":613,"synthetic_B":1425},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":21,"start":14,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":90,"start":58,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1007,"start":896,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":717,"start":603,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":431,"start":319,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":524,"start":428,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":932,"start":837,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":507,"start":442,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":58,"start":21,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":72}],"query_bed":[37,109],"query_length":72,"union_overlap_bases":72},"family":"stranded","fingerprint":"a9f6aa267bafff2d1ffa653ddfd031af756afd10486a0c9616eb9bba86355e4d","group_id":"a9f6aa267bafff2d1ffa653ddfd031af756afd10486a0c9616eb9bba86355e4d","id":"INTERVALS-0011868","index":11868,"input":{"contigs":{"synthetic_A":776,"synthetic_B":1788},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":109,"start":37,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":109,"start":38,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":242,"start":239,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":141,"start":100,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":355,"start":337,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":109,"start":37,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":55}],"query_bed":[458,513],"query_length":55,"union_overlap_bases":55},"family":"coordinate_conversion","fingerprint":"f9f71fba6eaa312b72d4fde1d21e5ebe94f13783ee59d269e63aca3dc80511a8","group_id":"f9f71fba6eaa312b72d4fde1d21e5ebe94f13783ee59d269e63aca3dc80511a8","id":"INTERVALS-0011884","index":11884,"input":{"contigs":{"synthetic_A":941,"synthetic_B":1460},"features":[{"basis":"one_closed","contig":"synthetic_A","end":513,"start":459,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":644,"start":629,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":301,"start":267,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":786,"start":677,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1372,"start":1274,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":308,"start":230,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":79,"start":50,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":899,"start":801,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":513,"start":459,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":6,"overlap_bases":26}],"query_bed":[115,176],"query_length":61,"union_overlap_bases":26},"family":"touching_boundary","fingerprint":"8220f7042f335bfd70773af25909ab3c3c42a14b3a8a3e5d849e6c8692581803","group_id":"8220f7042f335bfd70773af25909ab3c3c42a14b3a8a3e5d849e6c8692581803","id":"INTERVALS-0011890","index":11890,"input":{"contigs":{"synthetic_A":999,"synthetic_B":1401},"features":[{"basis":"one_closed","contig":"synthetic_A","end":115,"start":111,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":192,"start":176,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":346,"start":283,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":239,"start":150,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":975,"start":881,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":763,"start":707,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":145,"start":119,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":443,"start":438,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":457,"start":337,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":208,"start":169,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":718,"start":643,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":109,"start":56,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":176,"start":115,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":36},{"feature_index":1,"overlap_bases":34}],"query_bed":[636,672],"query_length":36,"union_overlap_bases":36},"family":"nested","fingerprint":"e24ce5e8aca54f5a44bcea75466390da623321f6f3e766b5d5371f676b90b7bf","group_id":"e24ce5e8aca54f5a44bcea75466390da623321f6f3e766b5d5371f676b90b7bf","id":"INTERVALS-0011901","index":11901,"input":{"contigs":{"synthetic_A":980,"synthetic_B":664},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":677,"start":631,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":671,"start":638,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":612,"start":565,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":933,"start":851,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":440,"start":420,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":601,"start":498,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":186,"start":70,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":290,"start":285,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":147,"start":75,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":167,"start":97,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":398,"start":284,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":825,"start":812,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":672,"start":637,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":40}],"query_bed":[301,341],"query_length":40,"union_overlap_bases":40},"family":"coordinate_conversion","fingerprint":"97763e2a11785de1ff8abb7a0e344b1a4847183158d6c312aeb20235a4c06bb1","group_id":"97763e2a11785de1ff8abb7a0e344b1a4847183158d6c312aeb20235a4c06bb1","id":"INTERVALS-0011914","index":11914,"input":{"contigs":{"synthetic_A":794,"synthetic_B":771},"features":[{"basis":"one_closed","contig":"synthetic_B","end":341,"start":302,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":360,"start":276,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":492,"start":429,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":521,"start":474,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":372,"start":332,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":640,"start":527,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":341,"start":302,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":72}],"query_bed":[338,410],"query_length":72,"union_overlap_bases":72},"family":"stranded","fingerprint":"f789d54cd6309377a948d8e134462cbd6574defe4b47b7b8238d097b9ec800d1","group_id":"f789d54cd6309377a948d8e134462cbd6574defe4b47b7b8238d097b9ec800d1","id":"INTERVALS-0011918","index":11918,"input":{"contigs":{"synthetic_A":1235,"synthetic_B":771},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":410,"start":338,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":410,"start":339,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":571,"start":514,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":359,"start":349,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":458,"start":364,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":436,"start":327,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":171,"start":137,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":410,"start":338,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[20,57],"query_length":37,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"263e23a87793baa77c0415330e5bb9f1fa0381a9d629a49acac3d0d3b8b7b95a","group_id":"263e23a87793baa77c0415330e5bb9f1fa0381a9d629a49acac3d0d3b8b7b95a","id":"INTERVALS-0011925","index":11925,"input":{"contigs":{"synthetic_A":1575,"synthetic_B":1718},"features":[{"basis":"one_closed","contig":"synthetic_A","end":20,"start":18,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":58,"start":58,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1098,"start":1038,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":402,"start":291,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":772,"start":716,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":729,"start":665,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1319,"start":1251,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":500,"start":486,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":57,"start":20,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18}],"query_bed":[554,572],"query_length":18,"union_overlap_bases":18},"family":"stranded","fingerprint":"d1de6cae941e6ac3ed41db75f26ab526db8a2b4510292e7447455dee5a35ff73","group_id":"d1de6cae941e6ac3ed41db75f26ab526db8a2b4510292e7447455dee5a35ff73","id":"INTERVALS-0011943","index":11943,"input":{"contigs":{"synthetic_A":761,"synthetic_B":823},"features":[{"basis":"one_closed","contig":"synthetic_A","end":572,"start":555,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":572,"start":554,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":336,"start":235,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":575,"start":496,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":244,"start":169,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":223,"start":130,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":178,"start":86,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":562,"start":516,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":510,"start":414,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":85,"start":50,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":289,"start":255,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":717,"start":632,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":572,"start":554,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":76}],"query_bed":[543,619],"query_length":76,"union_overlap_bases":76},"family":"stranded","fingerprint":"4636d2c2c789919a523db9a4e34e6ee40f56252eb93829d385903029b2d5607d","group_id":"4636d2c2c789919a523db9a4e34e6ee40f56252eb93829d385903029b2d5607d","id":"INTERVALS-0011958","index":11958,"input":{"contigs":{"synthetic_A":1472,"synthetic_B":816},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":619,"start":543,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":619,"start":544,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":614,"start":556,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":144,"start":61,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":692,"start":690,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":471,"start":358,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":488,"start":453,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":619,"start":544,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":54},{"feature_index":2,"overlap_bases":2}],"query_bed":[483,538],"query_length":55,"union_overlap_bases":55},"family":"overlapping_blocks","fingerprint":"50096ac6f6a3b5fd0d98af5a03d8b6877d14b273c1dcbbf713a279ac4b321ee3","group_id":"50096ac6f6a3b5fd0d98af5a03d8b6877d14b273c1dcbbf713a279ac4b321ee3","id":"INTERVALS-0011967","index":11967,"input":{"contigs":{"synthetic_A":1551,"synthetic_B":1405},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":486,"start":480,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":538,"start":485,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":541,"start":537,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1226,"start":1213,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":257,"start":236,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":995,"start":907,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":917,"start":859,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":71,"start":68,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":229,"start":183,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":300,"start":182,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":663,"start":624,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":538,"start":484,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":70}],"query_bed":[253,323],"query_length":70,"union_overlap_bases":70},"family":"stranded","fingerprint":"af3706a2c0d5f8bc3026b83aef96451c29260df16e3a611a8f6bad63660a8824","group_id":"af3706a2c0d5f8bc3026b83aef96451c29260df16e3a611a8f6bad63660a8824","id":"INTERVALS-0011973","index":11973,"input":{"contigs":{"synthetic_A":902,"synthetic_B":881},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":323,"start":253,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":323,"start":253,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":626,"start":583,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":519,"start":490,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":225,"start":163,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":790,"start":778,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":868,"start":776,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":209,"start":99,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":377,"start":302,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":138,"start":52,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":618,"start":613,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":323,"start":254,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":4,"overlap_bases":10}],"query_bed":[423,433],"query_length":10,"union_overlap_bases":10},"family":"touching_boundary","fingerprint":"4386be8ef44a4fb08303ae4bd49ff2ae4ca3c7b5d6834bab75da08744b7d83f5","group_id":"4386be8ef44a4fb08303ae4bd49ff2ae4ca3c7b5d6834bab75da08744b7d83f5","id":"INTERVALS-0011985","index":11985,"input":{"contigs":{"synthetic_A":839,"synthetic_B":752},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":423,"start":408,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":469,"start":433,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":422,"start":387,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":275,"start":233,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":454,"start":363,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":433,"start":424,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1269,1286],"query_length":17,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"efe6fb6ce7d3c000a1ad82999daab3f2225546b737a9490d9979f21222d23360","group_id":"efe6fb6ce7d3c000a1ad82999daab3f2225546b737a9490d9979f21222d23360","id":"INTERVALS-0011990","index":11990,"input":{"contigs":{"synthetic_A":1776,"synthetic_B":1724},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1269,"start":1255,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1287,"start":1286,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1710,"start":1630,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1572,"start":1454,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1651,"start":1567,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":462,"start":435,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1229,"start":1199,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1286,"start":1269,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":51},{"feature_index":2,"overlap_bases":2}],"query_bed":[1106,1158],"query_length":52,"union_overlap_bases":52},"family":"overlapping_blocks","fingerprint":"9ff55450aa0524f89df6ff827a85df847843a9c10ea1c2b9f9424b9334d29e95","group_id":"9ff55450aa0524f89df6ff827a85df847843a9c10ea1c2b9f9424b9334d29e95","id":"INTERVALS-0011992","index":11992,"input":{"contigs":{"synthetic_A":1647,"synthetic_B":1602},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1109,"start":1103,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1158,"start":1107,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1161,"start":1156,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":354,"start":351,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1197,"start":1175,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1237,"start":1146,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1339,"start":1223,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1158,"start":1107,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46},{"feature_index":1,"overlap_bases":44}],"query_bed":[1206,1252],"query_length":46,"union_overlap_bases":46},"family":"nested","fingerprint":"8d5b4688c9fa7060f5a64c1eebc9c602cd5ba962b7588fa463248fe797020cbe","group_id":"8d5b4688c9fa7060f5a64c1eebc9c602cd5ba962b7588fa463248fe797020cbe","id":"INTERVALS-0011996","index":11996,"input":{"contigs":{"synthetic_A":1568,"synthetic_B":1583},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1257,"start":1202,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1251,"start":1207,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":809,"start":785,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":718,"start":637,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":602,"start":496,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":713,"start":650,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1181,"start":1113,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1287,"start":1225,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1252,"start":1207,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":71}],"query_bed":[1108,1179],"query_length":71,"union_overlap_bases":71},"family":"stranded","fingerprint":"8e909c2e98078ec8487c60c47541fb82bbf129eab1b591560c0d83ed6ff3863e","group_id":"8e909c2e98078ec8487c60c47541fb82bbf129eab1b591560c0d83ed6ff3863e","id":"INTERVALS-0012023","index":12023,"input":{"contigs":{"synthetic_A":1718,"synthetic_B":1382},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1179,"start":1108,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1179,"start":1108,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":753,"start":706,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1256,"start":1136,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1535,"start":1467,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":264,"start":263,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":395,"start":323,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":216,"start":128,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":908,"start":817,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1301,"start":1284,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1227,"start":1190,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1179,"start":1108,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":65}],"query_bed":[68,133],"query_length":65,"union_overlap_bases":65},"family":"coordinate_conversion","fingerprint":"eba98e3e1612334ffe4f737adced0e9623152ebed28fcd35ecccad6df9e47fc2","group_id":"eba98e3e1612334ffe4f737adced0e9623152ebed28fcd35ecccad6df9e47fc2","id":"INTERVALS-0012029","index":12029,"input":{"contigs":{"synthetic_A":635,"synthetic_B":1779},"features":[{"basis":"one_closed","contig":"synthetic_B","end":133,"start":69,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":119,"start":20,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":575,"start":463,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":962,"start":927,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1070,"start":963,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":285,"start":243,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1035,"start":927,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1651,"start":1569,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":133,"start":69,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1467,1517],"query_length":50,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"34ea9a127d77c8da05d22779888ae12a17e6a0ef27ea9a420d4ce73217f915d1","group_id":"34ea9a127d77c8da05d22779888ae12a17e6a0ef27ea9a420d4ce73217f915d1","id":"INTERVALS-0012035","index":12035,"input":{"contigs":{"synthetic_A":1788,"synthetic_B":776},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1467,"start":1465,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1530,"start":1518,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":468,"start":419,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":374,"start":352,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1260,"start":1182,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":675,"start":617,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":177,"start":124,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":237,"start":160,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":131,"start":20,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":286,"start":265,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1609,"start":1592,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1517,"start":1467,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":35}],"query_bed":[1175,1210],"query_length":35,"union_overlap_bases":35},"family":"stranded","fingerprint":"f8ec24083495274e25c47471015a571e19ff8f75b3534d1877d082995d4d3fb3","group_id":"f8ec24083495274e25c47471015a571e19ff8f75b3534d1877d082995d4d3fb3","id":"INTERVALS-0012113","index":12113,"input":{"contigs":{"synthetic_A":1460,"synthetic_B":1482},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1210,"start":1175,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1210,"start":1175,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":758,"start":687,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":49,"start":11,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":729,"start":717,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1210,"start":1175,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":39}],"query_bed":[369,408],"query_length":39,"union_overlap_bases":39},"family":"coordinate_conversion","fingerprint":"d904e706a81d957f8c82ec46f2a037dbccb3d2d04b08da80113b4f1d0a810c7f","group_id":"d904e706a81d957f8c82ec46f2a037dbccb3d2d04b08da80113b4f1d0a810c7f","id":"INTERVALS-0012124","index":12124,"input":{"contigs":{"synthetic_A":1529,"synthetic_B":1003},"features":[{"basis":"one_closed","contig":"synthetic_B","end":408,"start":370,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1109,"start":1026,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":739,"start":670,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":661,"start":602,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1034,"start":1014,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":343,"start":260,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":902,"start":849,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":408,"start":370,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":2,"overlap_bases":20}],"query_bed":[277,298],"query_length":21,"union_overlap_bases":20},"family":"touching_boundary","fingerprint":"850f901a01118efe9224d7d4cd86268789ee0b333427cb07fdd09d4f83a8b022","group_id":"850f901a01118efe9224d7d4cd86268789ee0b333427cb07fdd09d4f83a8b022","id":"INTERVALS-0012155","index":12155,"input":{"contigs":{"synthetic_A":620,"synthetic_B":741},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":277,"start":258,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":306,"start":299,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":384,"start":279,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":617,"start":520,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":259,"start":173,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":607,"start":524,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":208,"start":119,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":472,"start":450,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":595,"start":585,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":298,"start":277,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":45}],"query_bed":[350,395],"query_length":45,"union_overlap_bases":45},"family":"stranded","fingerprint":"723ad35ad7c007ef349d7a8e89810011bcabc257532990f61b5fe9f0d9225946","group_id":"723ad35ad7c007ef349d7a8e89810011bcabc257532990f61b5fe9f0d9225946","id":"INTERVALS-0012158","index":12158,"input":{"contigs":{"synthetic_A":1406,"synthetic_B":1238},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":395,"start":350,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":395,"start":351,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":78,"start":3,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":938,"start":931,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1116,"start":1032,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":922,"start":882,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":395,"start":351,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":50}],"query_bed":[53,103],"query_length":50,"union_overlap_bases":50},"family":"stranded","fingerprint":"c0e601a0f0ab5cf59ecd0916272e377f1bb455f9179e0541fd399ed32c7c80d4","group_id":"c0e601a0f0ab5cf59ecd0916272e377f1bb455f9179e0541fd399ed32c7c80d4","id":"INTERVALS-0012163","index":12163,"input":{"contigs":{"synthetic_A":655,"synthetic_B":843},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":103,"start":53,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":103,"start":54,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":531,"start":473,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":253,"start":189,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":356,"start":290,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":530,"start":468,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":130,"start":34,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":376,"start":325,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":438,"start":361,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":524,"start":518,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":344,"start":289,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":522,"start":410,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":103,"start":53,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":80},{"feature_index":1,"overlap_bases":78}],"query_bed":[895,975],"query_length":80,"union_overlap_bases":80},"family":"nested","fingerprint":"99ebc3a0ac1cbcb56aad4eec159d3ee8203a715efa272f38b1b3d0ee9e5c19bf","group_id":"99ebc3a0ac1cbcb56aad4eec159d3ee8203a715efa272f38b1b3d0ee9e5c19bf","id":"INTERVALS-0012176","index":12176,"input":{"contigs":{"synthetic_A":1465,"synthetic_B":1773},"features":[{"basis":"one_closed","contig":"synthetic_B","end":980,"start":891,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":974,"start":897,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1385,"start":1276,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":750,"start":636,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1371,"start":1256,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":837,"start":739,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":975,"start":895,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":38}],"query_bed":[556,594],"query_length":38,"union_overlap_bases":38},"family":"coordinate_conversion","fingerprint":"0241a4ca8c9a6abe780f50eae9b1ba11062473059e7581083364616ee8ea2ce5","group_id":"0241a4ca8c9a6abe780f50eae9b1ba11062473059e7581083364616ee8ea2ce5","id":"INTERVALS-0012209","index":12209,"input":{"contigs":{"synthetic_A":919,"synthetic_B":828},"features":[{"basis":"one_closed","contig":"synthetic_B","end":594,"start":557,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":308,"start":225,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":673,"start":635,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":638,"start":612,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":797,"start":776,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":516,"start":430,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":165,"start":108,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":123,"start":48,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":367,"start":256,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":426,"start":389,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":399,"start":344,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":262,"start":180,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":594,"start":557,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":16},{"feature_index":1,"overlap_bases":14}],"query_bed":[406,422],"query_length":16,"union_overlap_bases":16},"family":"nested","fingerprint":"5dc99f7897c2ad48e838c40c4ec9a2f5488bb2e92b8f1223a135354ee958eb79","group_id":"5dc99f7897c2ad48e838c40c4ec9a2f5488bb2e92b8f1223a135354ee958eb79","id":"INTERVALS-0012226","index":12226,"input":{"contigs":{"synthetic_A":1374,"synthetic_B":1265},"features":[{"basis":"one_closed","contig":"synthetic_A","end":427,"start":402,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":421,"start":408,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":219,"start":121,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":159,"start":135,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1174,"start":1117,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":187,"start":112,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":519,"start":494,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":280,"start":192,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1262,"start":1151,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":207,"start":156,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1094,"start":1054,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":328,"start":252,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":422,"start":406,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":7,"overlap_bases":56}],"query_bed":[261,337],"query_length":76,"union_overlap_bases":56},"family":"touching_boundary","fingerprint":"d0a83dc4911df51e2b586a3db1a31b0263ca6e56d23562612ff97f1071367805","group_id":"d0a83dc4911df51e2b586a3db1a31b0263ca6e56d23562612ff97f1071367805","id":"INTERVALS-0012245","index":12245,"input":{"contigs":{"synthetic_A":1571,"synthetic_B":901},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":261,"start":257,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":338,"start":337,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":425,"start":408,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":293,"start":236,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":881,"start":846,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1463,"start":1373,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":736,"start":667,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":317,"start":260,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":337,"start":261,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":72},{"feature_index":1,"overlap_bases":70}],"query_bed":[545,617],"query_length":72,"union_overlap_bases":72},"family":"nested","fingerprint":"336ce6f4293888c9a2c9fb72040fb5ff2b588767b73aa7b24e94b20bf3d1f2a4","group_id":"336ce6f4293888c9a2c9fb72040fb5ff2b588767b73aa7b24e94b20bf3d1f2a4","id":"INTERVALS-0012246","index":12246,"input":{"contigs":{"synthetic_A":802,"synthetic_B":1039},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":622,"start":540,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":616,"start":546,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":534,"start":473,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":656,"start":561,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":822,"start":754,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":558,"start":555,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":323,"start":232,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":284,"start":178,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":637,"start":526,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":631,"start":599,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":239,"start":182,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":245,"start":227,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":617,"start":546,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":17},{"feature_index":2,"overlap_bases":2}],"query_bed":[1052,1070],"query_length":18,"union_overlap_bases":18},"family":"overlapping_blocks","fingerprint":"cccb87384c61c33e0d7e991828e95ef42a202b8a1a6669a74fc8f7c6b0852743","group_id":"cccb87384c61c33e0d7e991828e95ef42a202b8a1a6669a74fc8f7c6b0852743","id":"INTERVALS-0012267","index":12267,"input":{"contigs":{"synthetic_A":790,"synthetic_B":1390},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1055,"start":1049,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1070,"start":1053,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1073,"start":1069,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":637,"start":566,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":403,"start":330,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":339,"start":300,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":548,"start":487,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":664,"start":609,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":661,"start":622,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":272,"start":166,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1070,"start":1053,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":78}],"query_bed":[46,124],"query_length":78,"union_overlap_bases":78},"family":"stranded","fingerprint":"d728655c676bd4a71d66f7c90a5360f29f0d8bd53ba5c6a7dfe30ec457c91806","group_id":"d728655c676bd4a71d66f7c90a5360f29f0d8bd53ba5c6a7dfe30ec457c91806","id":"INTERVALS-0012268","index":12268,"input":{"contigs":{"synthetic_A":1464,"synthetic_B":1150},"features":[{"basis":"one_closed","contig":"synthetic_A","end":124,"start":47,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":124,"start":47,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":519,"start":500,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":663,"start":552,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":596,"start":577,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":507,"start":503,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":124,"start":46,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":29},{"feature_index":2,"overlap_bases":2}],"query_bed":[83,113],"query_length":30,"union_overlap_bases":30},"family":"overlapping_blocks","fingerprint":"44b8b122bf916777e56a4fe5b1914b945ab72f3e8acbfe625dc846e327d84b5f","group_id":"44b8b122bf916777e56a4fe5b1914b945ab72f3e8acbfe625dc846e327d84b5f","id":"INTERVALS-0012277","index":12277,"input":{"contigs":{"synthetic_A":1426,"synthetic_B":1522},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":86,"start":80,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":113,"start":85,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":116,"start":112,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1302,"start":1247,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":48,"start":18,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":833,"start":820,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":173,"start":57,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":549,"start":535,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":206,"start":96,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1379,"start":1319,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":387,"start":314,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":113,"start":83,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":21},{"feature_index":2,"overlap_bases":2},{"feature_index":4,"overlap_bases":11},{"feature_index":5,"overlap_bases":22}],"query_bed":[820,842],"query_length":22,"union_overlap_bases":22},"family":"overlapping_blocks","fingerprint":"4488e4241a33019fb428cea839c0f92e4400f864cc2e006cfa7ecc81de2ae3d7","group_id":"4488e4241a33019fb428cea839c0f92e4400f864cc2e006cfa7ecc81de2ae3d7","id":"INTERVALS-0012282","index":12282,"input":{"contigs":{"synthetic_A":627,"synthetic_B":1329},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":823,"start":817,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":842,"start":822,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":845,"start":840,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":474,"start":464,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":831,"start":778,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":897,"start":809,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":413,"start":344,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":257,"start":221,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":972,"start":908,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":264,"start":198,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":600,"start":588,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":842,"start":820,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":77},{"feature_index":1,"overlap_bases":75}],"query_bed":[1198,1275],"query_length":77,"union_overlap_bases":77},"family":"nested","fingerprint":"31491276cfbb370c72390d58d8a71a20e82d273bf0ec3f3de67e4720d17d9e07","group_id":"31491276cfbb370c72390d58d8a71a20e82d273bf0ec3f3de67e4720d17d9e07","id":"INTERVALS-0012286","index":12286,"input":{"contigs":{"synthetic_A":1726,"synthetic_B":890},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1280,"start":1193,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1274,"start":1199,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":40,"start":27,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":384,"start":323,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":905,"start":794,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":161,"start":135,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":337,"start":267,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":682,"start":602,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":559,"start":461,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1162,"start":1132,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":651,"start":595,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1275,"start":1199,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":72},{"feature_index":2,"overlap_bases":2},{"feature_index":5,"overlap_bases":23}],"query_bed":[30,103],"query_length":73,"union_overlap_bases":73},"family":"overlapping_blocks","fingerprint":"fc77a822726e9b528ecb4140cbf2d8b30e9b8056f0930362f5218366ad93f39c","group_id":"fc77a822726e9b528ecb4140cbf2d8b30e9b8056f0930362f5218366ad93f39c","id":"INTERVALS-0012292","index":12292,"input":{"contigs":{"synthetic_A":1509,"synthetic_B":732},"features":[{"basis":"one_closed","contig":"synthetic_B","end":33,"start":28,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":103,"start":31,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":106,"start":101,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":627,"start":541,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":367,"start":360,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":53,"start":30,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1305,"start":1267,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":214,"start":179,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":103,"start":30,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":75},{"feature_index":1,"overlap_bases":73},{"feature_index":2,"overlap_bases":26}],"query_bed":[95,170],"query_length":75,"union_overlap_bases":75},"family":"nested","fingerprint":"2fdd7c429abe38f249be7634a4952bb207848da2f319177080797ad3749aacdb","group_id":"2fdd7c429abe38f249be7634a4952bb207848da2f319177080797ad3749aacdb","id":"INTERVALS-0012306","index":12306,"input":{"contigs":{"synthetic_A":772,"synthetic_B":699},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":175,"start":90,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":169,"start":96,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":205,"start":144,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":165,"start":105,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":205,"start":166,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":42,"start":7,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":649,"start":648,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":553,"start":536,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":170,"start":96,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":64}],"query_bed":[107,171],"query_length":64,"union_overlap_bases":64},"family":"stranded","fingerprint":"41c37b827e7afecc32475853d168e3ae45a336fbd1e6aa3accc0189cb9e8bc16","group_id":"41c37b827e7afecc32475853d168e3ae45a336fbd1e6aa3accc0189cb9e8bc16","id":"INTERVALS-0012333","index":12333,"input":{"contigs":{"synthetic_A":1110,"synthetic_B":969},"features":[{"basis":"one_closed","contig":"synthetic_B","end":171,"start":108,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":171,"start":107,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":907,"start":895,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":90,"start":24,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":618,"start":514,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":773,"start":695,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":352,"start":316,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":523,"start":495,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":171,"start":107,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1291,1308],"query_length":17,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"0729bea09e62476d1f1673eba840f479e37d023ea08f60b98a57201ac8fae580","group_id":"0729bea09e62476d1f1673eba840f479e37d023ea08f60b98a57201ac8fae580","id":"INTERVALS-0012360","index":12360,"input":{"contigs":{"synthetic_A":1316,"synthetic_B":1742},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1291,"start":1280,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1337,"start":1308,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1479,"start":1454,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":942,"start":917,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":708,"start":648,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":944,"start":925,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1033,"start":919,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":433,"start":346,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":455,"start":433,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":317,"start":233,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1102,"start":1085,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":295,"start":235,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1308,"start":1291,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":55},{"feature_index":2,"overlap_bases":2}],"query_bed":[71,127],"query_length":56,"union_overlap_bases":56},"family":"overlapping_blocks","fingerprint":"d7f0d0b4453dbff4ffcf429467fa8205d0908c62289f89182e2c6913f71be85d","group_id":"d7f0d0b4453dbff4ffcf429467fa8205d0908c62289f89182e2c6913f71be85d","id":"INTERVALS-0012362","index":12362,"input":{"contigs":{"synthetic_A":1110,"synthetic_B":1555},"features":[{"basis":"one_closed","contig":"synthetic_A","end":74,"start":69,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":127,"start":73,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":130,"start":126,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":887,"start":848,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":384,"start":371,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":719,"start":703,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":75,"start":58,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":127,"start":71,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":37},{"feature_index":2,"overlap_bases":2}],"query_bed":[90,128],"query_length":38,"union_overlap_bases":38},"family":"overlapping_blocks","fingerprint":"97d98ee46d394b63310a153e9c4d71dcf1d39db2b34eadf4ecb9e9001ff8cf5c","group_id":"97d98ee46d394b63310a153e9c4d71dcf1d39db2b34eadf4ecb9e9001ff8cf5c","id":"INTERVALS-0012367","index":12367,"input":{"contigs":{"synthetic_A":1002,"synthetic_B":1677},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":93,"start":87,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":128,"start":92,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":131,"start":127,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":399,"start":292,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":334,"start":317,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":128,"start":91,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1126,1157],"query_length":31,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"2006582a427eba0ff03c61257b5490bf91c7808cd94ad4b2a7f9a3a4f471688a","group_id":"2006582a427eba0ff03c61257b5490bf91c7808cd94ad4b2a7f9a3a4f471688a","id":"INTERVALS-0012370","index":12370,"input":{"contigs":{"synthetic_A":1264,"synthetic_B":1524},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1126,"start":1117,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1177,"start":1158,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1119,"start":1016,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":815,"start":763,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":720,"start":686,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":367,"start":280,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1157,"start":1127,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":30},{"feature_index":1,"overlap_bases":28}],"query_bed":[449,479],"query_length":30,"union_overlap_bases":30},"family":"nested","fingerprint":"ca8a0c569544709ddab8af2da21dbe727838ea50c104a3366545fba7e47a3cef","group_id":"ca8a0c569544709ddab8af2da21dbe727838ea50c104a3366545fba7e47a3cef","id":"INTERVALS-0012391","index":12391,"input":{"contigs":{"synthetic_A":1155,"synthetic_B":1722},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":484,"start":444,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":478,"start":451,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":88,"start":64,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":761,"start":642,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1045,"start":964,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":120,"start":49,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":479,"start":449,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":9}],"query_bed":[479,488],"query_length":9,"union_overlap_bases":9},"family":"stranded","fingerprint":"e56b94869ee8e451170584eff2bcf60c005b495dde6f417b888cc278e989779f","group_id":"e56b94869ee8e451170584eff2bcf60c005b495dde6f417b888cc278e989779f","id":"INTERVALS-0012393","index":12393,"input":{"contigs":{"synthetic_A":938,"synthetic_B":797},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":488,"start":479,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":488,"start":480,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":623,"start":506,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":431,"start":344,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":573,"start":564,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":437,"start":431,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":423,"start":357,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":488,"start":479,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":15},{"feature_index":1,"overlap_bases":13}],"query_bed":[205,220],"query_length":15,"union_overlap_bases":15},"family":"nested","fingerprint":"f7bea5ce346e31d2aaa2f1063ffe3e51702abd6acebc7a1470f432edf0dfd886","group_id":"f7bea5ce346e31d2aaa2f1063ffe3e51702abd6acebc7a1470f432edf0dfd886","id":"INTERVALS-0012396","index":12396,"input":{"contigs":{"synthetic_A":1306,"synthetic_B":1489},"features":[{"basis":"one_closed","contig":"synthetic_B","end":225,"start":201,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":219,"start":206,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1388,"start":1357,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":94,"start":84,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":646,"start":586,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":545,"start":439,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":922,"start":823,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":880,"start":773,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":623,"start":612,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":969,"start":967,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":220,"start":205,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":8,"overlap_bases":5}],"query_bed":[488,493],"query_length":5,"union_overlap_bases":5},"family":"touching_boundary","fingerprint":"438bc41a47626306ddea6ae701d4623e984e599cf745ff6e8305fa9f24aa80a0","group_id":"438bc41a47626306ddea6ae701d4623e984e599cf745ff6e8305fa9f24aa80a0","id":"INTERVALS-0012400","index":12400,"input":{"contigs":{"synthetic_A":1465,"synthetic_B":723},"features":[{"basis":"one_closed","contig":"synthetic_B","end":488,"start":480,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":531,"start":494,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":95,"start":66,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":145,"start":36,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":548,"start":483,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":473,"start":388,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":224,"start":163,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1352,"start":1345,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":510,"start":414,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":247,"start":189,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":695,"start":584,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":493,"start":488,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":80},{"feature_index":1,"overlap_bases":78}],"query_bed":[98,178],"query_length":80,"union_overlap_bases":80},"family":"nested","fingerprint":"607b4ddefed65d9252bc383a54aa772b9bb4b2a2b21b73c92b67ec16535a4402","group_id":"607b4ddefed65d9252bc383a54aa772b9bb4b2a2b21b73c92b67ec16535a4402","id":"INTERVALS-0012411","index":12411,"input":{"contigs":{"synthetic_A":1067,"synthetic_B":708},"features":[{"basis":"one_closed","contig":"synthetic_A","end":183,"start":94,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":177,"start":99,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":7,"start":5,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":867,"start":826,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":590,"start":479,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":281,"start":187,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":228,"start":156,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":336,"start":245,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":516,"start":512,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":469,"start":448,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":31,"start":7,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":293,"start":194,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":178,"start":98,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":67},{"feature_index":2,"overlap_bases":2}],"query_bed":[253,321],"query_length":68,"union_overlap_bases":68},"family":"overlapping_blocks","fingerprint":"5b6534903e88dc693eaa723ee2e1309310fd575718ec6132c203158f57e31313","group_id":"5b6534903e88dc693eaa723ee2e1309310fd575718ec6132c203158f57e31313","id":"INTERVALS-0012412","index":12412,"input":{"contigs":{"synthetic_A":1616,"synthetic_B":1033},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":256,"start":250,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":321,"start":254,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":324,"start":319,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":340,"start":340,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1508,"start":1402,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":56,"start":4,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":385,"start":342,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":876,"start":870,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1241,"start":1160,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":202,"start":156,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":856,"start":788,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1477,"start":1418,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":321,"start":253,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":48}],"query_bed":[380,428],"query_length":48,"union_overlap_bases":48},"family":"coordinate_conversion","fingerprint":"0d2a70ec95b8ec4b202fdb5006f71974aa158a3e1e296bd5e5f0fa6c9015ccad","group_id":"0d2a70ec95b8ec4b202fdb5006f71974aa158a3e1e296bd5e5f0fa6c9015ccad","id":"INTERVALS-0012434","index":12434,"input":{"contigs":{"synthetic_A":1546,"synthetic_B":1527},"features":[{"basis":"one_closed","contig":"synthetic_A","end":428,"start":381,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":782,"start":733,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1099,"start":987,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1423,"start":1389,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":66,"start":32,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":495,"start":447,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":895,"start":824,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":680,"start":641,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1425,"start":1403,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":428,"start":381,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1014,1050],"query_length":36,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"26748e52b24aedeaeee56698c1034cf5c6ba7709d5f1d96da82b777c890f02ad","group_id":"26748e52b24aedeaeee56698c1034cf5c6ba7709d5f1d96da82b777c890f02ad","id":"INTERVALS-0012435","index":12435,"input":{"contigs":{"synthetic_A":1276,"synthetic_B":1732},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1014,"start":1004,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1084,"start":1051,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":610,"start":574,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1225,"start":1181,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":178,"start":95,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1050,"start":1014,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":52},{"feature_index":1,"overlap_bases":50}],"query_bed":[549,601],"query_length":52,"union_overlap_bases":52},"family":"nested","fingerprint":"e991488a6fbcc8262052dc1de12bbbaac0c9358751b91cba52fe5ca57a168385","group_id":"e991488a6fbcc8262052dc1de12bbbaac0c9358751b91cba52fe5ca57a168385","id":"INTERVALS-0012441","index":12441,"input":{"contigs":{"synthetic_A":1493,"synthetic_B":972},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":606,"start":544,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":600,"start":550,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":68,"start":64,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":375,"start":279,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":926,"start":884,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":407,"start":356,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":81,"start":64,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":357,"start":269,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":293,"start":244,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":552,"start":498,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":601,"start":549,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[141,217],"query_length":76,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"67dd63c85e6f279c32a113618292a29e7c5492e199cefe7316adf753546d266d","group_id":"67dd63c85e6f279c32a113618292a29e7c5492e199cefe7316adf753546d266d","id":"INTERVALS-0012475","index":12475,"input":{"contigs":{"synthetic_A":1485,"synthetic_B":1207},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":141,"start":129,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":222,"start":217,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1216,"start":1154,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":916,"start":872,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":948,"start":947,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":164,"start":104,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1093,"start":984,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":791,"start":703,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1013,"start":902,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":800,"start":780,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":217,"start":141,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":4,"overlap_bases":4}],"query_bed":[773,817],"query_length":44,"union_overlap_bases":4},"family":"touching_boundary","fingerprint":"bb540a5c33d4a6d65c6f19c23e9ba2f0eb2f968bc218e0c378d09d508327aaa9","group_id":"bb540a5c33d4a6d65c6f19c23e9ba2f0eb2f968bc218e0c378d09d508327aaa9","id":"INTERVALS-0012480","index":12480,"input":{"contigs":{"synthetic_A":1120,"synthetic_B":1561},"features":[{"basis":"one_closed","contig":"synthetic_A","end":773,"start":769,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":837,"start":817,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":495,"start":429,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":861,"start":859,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":837,"start":813,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":377,"start":265,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":514,"start":474,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1284,"start":1246,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":384,"start":300,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":339,"start":314,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":475,"start":405,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":817,"start":773,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":38},{"feature_index":6,"overlap_bases":38},{"feature_index":8,"overlap_bases":22}],"query_bed":[133,171],"query_length":38,"union_overlap_bases":38},"family":"stranded","fingerprint":"a5d6a45008910913467958a10fe36b45441230d80d443f96b68e511406b45c2b","group_id":"a5d6a45008910913467958a10fe36b45441230d80d443f96b68e511406b45c2b","id":"INTERVALS-0012488","index":12488,"input":{"contigs":{"synthetic_A":1287,"synthetic_B":668},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":171,"start":133,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":171,"start":133,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":84,"start":80,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":107,"start":46,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":624,"start":552,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":385,"start":346,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":176,"start":123,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":232,"start":154,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":230,"start":150,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":171,"start":134,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":43}],"query_bed":[822,865],"query_length":43,"union_overlap_bases":43},"family":"stranded","fingerprint":"6d88f134dbd5f18c3c4d3cdb0efd869bea54f68932077e8232bff49c0e7b44cf","group_id":"6d88f134dbd5f18c3c4d3cdb0efd869bea54f68932077e8232bff49c0e7b44cf","id":"INTERVALS-0012503","index":12503,"input":{"contigs":{"synthetic_A":819,"synthetic_B":1420},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":865,"start":822,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":865,"start":823,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":596,"start":491,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":820,"start":709,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":90,"start":5,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":338,"start":316,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":591,"start":504,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":237,"start":214,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":662,"start":558,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":865,"start":822,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":77},{"feature_index":5,"overlap_bases":9}],"query_bed":[554,631],"query_length":77,"union_overlap_bases":77},"family":"coordinate_conversion","fingerprint":"a94d069cabfee8e735d05096b09ee985537a3526b26cea25ff81a3cc855a5a4d","group_id":"a94d069cabfee8e735d05096b09ee985537a3526b26cea25ff81a3cc855a5a4d","id":"INTERVALS-0012504","index":12504,"input":{"contigs":{"synthetic_A":1376,"synthetic_B":1752},"features":[{"basis":"one_closed","contig":"synthetic_B","end":631,"start":555,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":96,"start":37,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1331,"start":1254,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":450,"start":430,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":285,"start":284,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":699,"start":623,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":631,"start":555,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32}],"query_bed":[505,537],"query_length":32,"union_overlap_bases":32},"family":"coordinate_conversion","fingerprint":"91f763849e927b6dd2cd5f0e02d0b631b38c138b41e089ecbaf9ea65dd8583d5","group_id":"91f763849e927b6dd2cd5f0e02d0b631b38c138b41e089ecbaf9ea65dd8583d5","id":"INTERVALS-0012509","index":12509,"input":{"contigs":{"synthetic_A":662,"synthetic_B":1164},"features":[{"basis":"one_closed","contig":"synthetic_B","end":537,"start":506,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":529,"start":444,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1120,"start":1011,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":110,"start":96,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":274,"start":206,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":271,"start":153,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":537,"start":506,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":14},{"feature_index":2,"overlap_bases":2}],"query_bed":[170,185],"query_length":15,"union_overlap_bases":15},"family":"overlapping_blocks","fingerprint":"7be9bf6ada12b2c3ab98f984f0d971c876bf93874e92804912ed08e824adc729","group_id":"7be9bf6ada12b2c3ab98f984f0d971c876bf93874e92804912ed08e824adc729","id":"INTERVALS-0012512","index":12512,"input":{"contigs":{"synthetic_A":890,"synthetic_B":719},"features":[{"basis":"one_closed","contig":"synthetic_B","end":173,"start":168,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":185,"start":172,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":188,"start":183,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":199,"start":124,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":518,"start":505,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":478,"start":421,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":170,"start":126,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":452,"start":365,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":357,"start":346,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":316,"start":205,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":292,"start":251,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":497,"start":477,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":185,"start":170,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56},{"feature_index":1,"overlap_bases":54}],"query_bed":[477,533],"query_length":56,"union_overlap_bases":56},"family":"nested","fingerprint":"2c537338affc61e07d4eaf1fa5469ed0352b6909c14f0e0ae72dbcbfab253146","group_id":"2c537338affc61e07d4eaf1fa5469ed0352b6909c14f0e0ae72dbcbfab253146","id":"INTERVALS-0012531","index":12531,"input":{"contigs":{"synthetic_A":1312,"synthetic_B":1780},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":538,"start":472,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":532,"start":478,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":89,"start":33,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1171,"start":1132,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":53,"start":42,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1264,"start":1147,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":533,"start":477,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[138,156],"query_length":18,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"926f3bac6d49861f4f4c12c6cc28e3ac5971eb1fb678cf794f9961d56ba8a07f","group_id":"926f3bac6d49861f4f4c12c6cc28e3ac5971eb1fb678cf794f9961d56ba8a07f","id":"INTERVALS-0012535","index":12535,"input":{"contigs":{"synthetic_A":1552,"synthetic_B":866},"features":[{"basis":"one_closed","contig":"synthetic_A","end":138,"start":127,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":192,"start":156,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":316,"start":256,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":849,"start":732,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1514,"start":1422,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":645,"start":602,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":963,"start":857,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":407,"start":350,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":156,"start":139,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":54},{"feature_index":5,"overlap_bases":40}],"query_bed":[647,701],"query_length":54,"union_overlap_bases":54},"family":"stranded","fingerprint":"2dc66a9a1ce870737d5f7f5a4e9bb039f8f28d8403dbf36660bb3b32298c6e74","group_id":"2dc66a9a1ce870737d5f7f5a4e9bb039f8f28d8403dbf36660bb3b32298c6e74","id":"INTERVALS-0012568","index":12568,"input":{"contigs":{"synthetic_A":1759,"synthetic_B":1460},"features":[{"basis":"one_closed","contig":"synthetic_B","end":701,"start":648,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":701,"start":648,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":394,"start":344,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":202,"start":163,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1226,"start":1197,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":687,"start":613,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":775,"start":772,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":948,"start":941,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":701,"start":648,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[427,454],"query_length":27,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"bc869e4e7793771bc1886bbf76c23b623fbe85886ecd034f71dca8234770964e","group_id":"bc869e4e7793771bc1886bbf76c23b623fbe85886ecd034f71dca8234770964e","id":"INTERVALS-0012580","index":12580,"input":{"contigs":{"synthetic_A":1713,"synthetic_B":1044},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":427,"start":415,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":487,"start":454,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":393,"start":285,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1469,"start":1446,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":189,"start":76,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":454,"start":428,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":16},{"feature_index":3,"overlap_bases":9}],"query_bed":[565,581],"query_length":16,"union_overlap_bases":16},"family":"stranded","fingerprint":"c317015e935fa61ffb2aea3ed7dced8880bda648e5473b191bc4733e3f25baa4","group_id":"c317015e935fa61ffb2aea3ed7dced8880bda648e5473b191bc4733e3f25baa4","id":"INTERVALS-0012603","index":12603,"input":{"contigs":{"synthetic_A":871,"synthetic_B":889},"features":[{"basis":"one_closed","contig":"synthetic_B","end":581,"start":566,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":581,"start":565,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":312,"start":229,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":681,"start":572,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":406,"start":349,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":98,"start":13,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":682,"start":608,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":36,"start":6,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":295,"start":186,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":276,"start":180,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":459,"start":416,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":684,"start":666,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":581,"start":565,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73},{"feature_index":1,"overlap_bases":71}],"query_bed":[94,167],"query_length":73,"union_overlap_bases":73},"family":"nested","fingerprint":"c9c97d9c7e73b3ed3b0c7b5524599007b66136fc6df0cbd2cec6da61d1f70d3d","group_id":"c9c97d9c7e73b3ed3b0c7b5524599007b66136fc6df0cbd2cec6da61d1f70d3d","id":"INTERVALS-0012611","index":12611,"input":{"contigs":{"synthetic_A":620,"synthetic_B":1492},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":172,"start":89,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":166,"start":95,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":593,"start":492,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":131,"start":39,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":962,"start":877,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1026,"start":1016,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":91,"start":84,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":698,"start":651,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1180,"start":1142,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":167,"start":95,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":5,"overlap_bases":6}],"query_bed":[55,113],"query_length":58,"union_overlap_bases":6},"family":"touching_boundary","fingerprint":"1fa12108ce0b542479d22020ebd9f3958f95cb998c82dea8a67e94106995f642","group_id":"1fa12108ce0b542479d22020ebd9f3958f95cb998c82dea8a67e94106995f642","id":"INTERVALS-0012620","index":12620,"input":{"contigs":{"synthetic_A":1487,"synthetic_B":613},"features":[{"basis":"one_closed","contig":"synthetic_B","end":55,"start":39,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":135,"start":113,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":46,"start":42,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":591,"start":471,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":226,"start":135,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":221,"start":108,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":494,"start":484,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":113,"start":56,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":55}],"query_bed":[386,441],"query_length":55,"union_overlap_bases":55},"family":"stranded","fingerprint":"999f51e6d70f4175543d89e2825301474ecea75c97e0f2c070481914a4cb17b0","group_id":"999f51e6d70f4175543d89e2825301474ecea75c97e0f2c070481914a4cb17b0","id":"INTERVALS-0012628","index":12628,"input":{"contigs":{"synthetic_A":1108,"synthetic_B":755},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":441,"start":386,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":441,"start":387,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":627,"start":534,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":192,"start":129,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":794,"start":683,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":331,"start":252,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":511,"start":488,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":701,"start":695,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":190,"start":82,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":260,"start":204,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":615,"start":524,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":211,"start":170,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":441,"start":386,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[47,93],"query_length":46,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"32a9effadb6fd8995371c0e7a0ac3f58bfcf2d6787c50fc8f013842565458667","group_id":"32a9effadb6fd8995371c0e7a0ac3f58bfcf2d6787c50fc8f013842565458667","id":"INTERVALS-0012630","index":12630,"input":{"contigs":{"synthetic_A":732,"synthetic_B":1596},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":47,"start":29,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":128,"start":93,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":288,"start":188,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":988,"start":929,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":742,"start":677,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":93,"start":48,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":60},{"feature_index":2,"overlap_bases":10}],"query_bed":[352,412],"query_length":60,"union_overlap_bases":60},"family":"coordinate_conversion","fingerprint":"18f33d6e6a97e97c7351b66c830ed156034dd730071783280d5b12e9fd1e83ba","group_id":"18f33d6e6a97e97c7351b66c830ed156034dd730071783280d5b12e9fd1e83ba","id":"INTERVALS-0012639","index":12639,"input":{"contigs":{"synthetic_A":1202,"synthetic_B":1081},"features":[{"basis":"one_closed","contig":"synthetic_A","end":412,"start":353,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":969,"start":904,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":362,"start":301,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":921,"start":815,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":546,"start":466,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":604,"start":506,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":412,"start":353,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[774,843],"query_length":69,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"d19eb42e82c692cd54e14382392e72bcaafd87647c310e4d85260249fe3d3847","group_id":"d19eb42e82c692cd54e14382392e72bcaafd87647c310e4d85260249fe3d3847","id":"INTERVALS-0012665","index":12665,"input":{"contigs":{"synthetic_A":1691,"synthetic_B":1022},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":774,"start":755,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":861,"start":844,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":304,"start":244,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":636,"start":547,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":673,"start":658,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1485,"start":1477,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":571,"start":487,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":571,"start":456,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":149,"start":112,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":666,"start":664,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":843,"start":775,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46}],"query_bed":[887,933],"query_length":46,"union_overlap_bases":46},"family":"coordinate_conversion","fingerprint":"78938b987c00bc64d35cac5f5a78a7eb1b05aae70c2d1957ca37dc346d133ad3","group_id":"78938b987c00bc64d35cac5f5a78a7eb1b05aae70c2d1957ca37dc346d133ad3","id":"INTERVALS-0012684","index":12684,"input":{"contigs":{"synthetic_A":834,"synthetic_B":1525},"features":[{"basis":"one_closed","contig":"synthetic_B","end":933,"start":888,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":440,"start":424,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":592,"start":592,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1234,"start":1120,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":219,"start":199,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":933,"start":888,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":26}],"query_bed":[386,412],"query_length":26,"union_overlap_bases":26},"family":"coordinate_conversion","fingerprint":"7f7406c2c90b879a41a08090eb40f0883627b899a2209157b2fc46f09ac4b593","group_id":"7f7406c2c90b879a41a08090eb40f0883627b899a2209157b2fc46f09ac4b593","id":"INTERVALS-0012694","index":12694,"input":{"contigs":{"synthetic_A":1515,"synthetic_B":1087},"features":[{"basis":"one_closed","contig":"synthetic_B","end":412,"start":387,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":495,"start":405,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":942,"start":826,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1076,"start":989,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":206,"start":170,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1248,"start":1195,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":599,"start":489,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":412,"start":387,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":58},{"feature_index":1,"overlap_bases":56}],"query_bed":[954,1012],"query_length":58,"union_overlap_bases":58},"family":"nested","fingerprint":"5fa07b0a51ca1d7055f2ab679e1ae808d1e1ff45da78b327dc5bab41b92c0387","group_id":"5fa07b0a51ca1d7055f2ab679e1ae808d1e1ff45da78b327dc5bab41b92c0387","id":"INTERVALS-0012696","index":12696,"input":{"contigs":{"synthetic_A":1278,"synthetic_B":898},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1017,"start":950,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1011,"start":955,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1172,"start":1086,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":134,"start":115,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1085,"start":1038,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":454,"start":391,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":332,"start":298,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":877,"start":799,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":730,"start":705,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":776,"start":691,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":361,"start":251,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":625,"start":526,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1012,"start":955,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":74},{"feature_index":2,"overlap_bases":2}],"query_bed":[1254,1329],"query_length":75,"union_overlap_bases":75},"family":"overlapping_blocks","fingerprint":"8950421e57b91988104f56836c67e8f7fbd0d68c7fda5b5da46224e9470a5cd5","group_id":"8950421e57b91988104f56836c67e8f7fbd0d68c7fda5b5da46224e9470a5cd5","id":"INTERVALS-0012697","index":12697,"input":{"contigs":{"synthetic_A":1678,"synthetic_B":610},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1257,"start":1252,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1329,"start":1255,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1332,"start":1327,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":280,"start":247,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":547,"start":476,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1350,"start":1335,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1329,"start":1254,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":30},{"feature_index":1,"overlap_bases":28}],"query_bed":[127,157],"query_length":30,"union_overlap_bases":30},"family":"nested","fingerprint":"bea978fe3c3329437805bce7fe48460db1b1c256f7cf4b725a5629a2d7118880","group_id":"bea978fe3c3329437805bce7fe48460db1b1c256f7cf4b725a5629a2d7118880","id":"INTERVALS-0012716","index":12716,"input":{"contigs":{"synthetic_A":769,"synthetic_B":1513},"features":[{"basis":"one_closed","contig":"synthetic_A","end":162,"start":123,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":156,"start":129,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":112,"start":105,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":391,"start":311,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":926,"start":825,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":975,"start":928,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1368,"start":1329,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":561,"start":485,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":112,"start":82,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":157,"start":128,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":23},{"feature_index":1,"overlap_bases":21}],"query_bed":[679,702],"query_length":23,"union_overlap_bases":23},"family":"nested","fingerprint":"36901e50a404c8dbeba762b0dfbe836bdd5078bedd5311fefd01f87e1621028a","group_id":"36901e50a404c8dbeba762b0dfbe836bdd5078bedd5311fefd01f87e1621028a","id":"INTERVALS-0012736","index":12736,"input":{"contigs":{"synthetic_A":1307,"synthetic_B":1089},"features":[{"basis":"one_closed","contig":"synthetic_B","end":707,"start":675,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":701,"start":680,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":636,"start":595,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":179,"start":65,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":540,"start":520,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":873,"start":778,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":389,"start":304,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":182,"start":129,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1068,"start":1021,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":702,"start":679,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":76},{"feature_index":1,"overlap_bases":74}],"query_bed":[204,280],"query_length":76,"union_overlap_bases":76},"family":"nested","fingerprint":"f88bf0b0267bd64ac4eea53e752d214c133811103d6a6a5dcb3f27c3ac38fb7d","group_id":"f88bf0b0267bd64ac4eea53e752d214c133811103d6a6a5dcb3f27c3ac38fb7d","id":"INTERVALS-0012746","index":12746,"input":{"contigs":{"synthetic_A":746,"synthetic_B":767},"features":[{"basis":"one_closed","contig":"synthetic_B","end":285,"start":200,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":279,"start":206,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":260,"start":186,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":449,"start":378,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":198,"start":163,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":94,"start":8,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":85,"start":69,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":570,"start":526,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":280,"start":205,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":7}],"query_bed":[704,711],"query_length":7,"union_overlap_bases":7},"family":"stranded","fingerprint":"48fba262520bb5146793c0d541ca677a9b13eb08ed4adaddc26d5a9779e993da","group_id":"48fba262520bb5146793c0d541ca677a9b13eb08ed4adaddc26d5a9779e993da","id":"INTERVALS-0012753","index":12753,"input":{"contigs":{"synthetic_A":1760,"synthetic_B":1190},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":711,"start":704,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":711,"start":705,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1503,"start":1413,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":789,"start":786,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1319,"start":1271,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":419,"start":307,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":181,"start":154,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":711,"start":704,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":52},{"feature_index":1,"overlap_bases":50}],"query_bed":[679,731],"query_length":52,"union_overlap_bases":52},"family":"nested","fingerprint":"9fa7bd44c6fe4e200724c54a3b0a35af7509e5ac8a71f82a9e982da8f7b05bd3","group_id":"9fa7bd44c6fe4e200724c54a3b0a35af7509e5ac8a71f82a9e982da8f7b05bd3","id":"INTERVALS-0012756","index":12756,"input":{"contigs":{"synthetic_A":1582,"synthetic_B":1218},"features":[{"basis":"one_closed","contig":"synthetic_B","end":736,"start":675,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":730,"start":681,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":847,"start":741,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":480,"start":385,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":706,"start":631,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1213,"start":1097,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":731,"start":680,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[145,161],"query_length":16,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"070a55f6570cde4e2eefc5d44d474d8a4a12350f4052020722c0621bbd712ee7","group_id":"070a55f6570cde4e2eefc5d44d474d8a4a12350f4052020722c0621bbd712ee7","id":"INTERVALS-0012775","index":12775,"input":{"contigs":{"synthetic_A":1498,"synthetic_B":1069},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":145,"start":131,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":192,"start":162,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":599,"start":479,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1076,"start":1019,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":982,"start":915,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1012,"start":894,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":161,"start":146,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":71},{"feature_index":6,"overlap_bases":42}],"query_bed":[346,417],"query_length":71,"union_overlap_bases":71},"family":"stranded","fingerprint":"453be0d8973dd0b5c8b1ebeec2178c19b47bbf6053737cf5948aa7de65474f12","group_id":"453be0d8973dd0b5c8b1ebeec2178c19b47bbf6053737cf5948aa7de65474f12","id":"INTERVALS-0012783","index":12783,"input":{"contigs":{"synthetic_A":1170,"synthetic_B":1349},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":417,"start":346,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":417,"start":347,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":200,"start":118,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":280,"start":268,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":18,"start":16,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":610,"start":602,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":484,"start":376,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1209,"start":1094,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":680,"start":660,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":418,"start":371,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":503,"start":423,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":417,"start":346,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":34},{"feature_index":2,"overlap_bases":2}],"query_bed":[350,385],"query_length":35,"union_overlap_bases":35},"family":"overlapping_blocks","fingerprint":"145db14477e7d4eebdc97d4ef65c762bb1d60d475d8e74a6e6fff5fe28af3067","group_id":"145db14477e7d4eebdc97d4ef65c762bb1d60d475d8e74a6e6fff5fe28af3067","id":"INTERVALS-0012792","index":12792,"input":{"contigs":{"synthetic_A":1792,"synthetic_B":900},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":353,"start":347,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":385,"start":352,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":388,"start":383,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":114,"start":15,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":339,"start":319,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1441,"start":1323,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":127,"start":39,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":385,"start":351,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":65},{"feature_index":8,"overlap_bases":40}],"query_bed":[964,1029],"query_length":65,"union_overlap_bases":65},"family":"stranded","fingerprint":"91c4512eb47bc415a18af08d46066a6b0b420652363fccad7b874bf1e9aaf479","group_id":"91c4512eb47bc415a18af08d46066a6b0b420652363fccad7b874bf1e9aaf479","id":"INTERVALS-0012823","index":12823,"input":{"contigs":{"synthetic_A":1790,"synthetic_B":900},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1029,"start":964,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1029,"start":964,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1102,"start":1068,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":150,"start":103,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1453,"start":1401,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":698,"start":672,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":222,"start":173,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1398,"start":1305,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1038,"start":990,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":214,"start":173,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":149,"start":127,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1436,"start":1320,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1029,"start":965,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":20}],"query_bed":[1504,1524],"query_length":20,"union_overlap_bases":20},"family":"coordinate_conversion","fingerprint":"2508a6fc797fbf959618295102250aa71289c421b19bc2735f87b297b04860fc","group_id":"2508a6fc797fbf959618295102250aa71289c421b19bc2735f87b297b04860fc","id":"INTERVALS-0012829","index":12829,"input":{"contigs":{"synthetic_A":1234,"synthetic_B":1725},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1524,"start":1505,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":332,"start":240,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1541,"start":1448,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":415,"start":336,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":314,"start":282,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1644,"start":1606,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":487,"start":460,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":840,"start":836,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":26,"start":7,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":471,"start":365,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":114,"start":22,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1056,"start":1016,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1524,"start":1505,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":48},{"feature_index":1,"overlap_bases":46}],"query_bed":[268,316],"query_length":48,"union_overlap_bases":48},"family":"nested","fingerprint":"9f2bb7bc87adf241cb1d1b8bcf9cc45aecae9aab86d3502e2b6267b5067d7314","group_id":"9f2bb7bc87adf241cb1d1b8bcf9cc45aecae9aab86d3502e2b6267b5067d7314","id":"INTERVALS-0012841","index":12841,"input":{"contigs":{"synthetic_A":798,"synthetic_B":1617},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":321,"start":263,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":315,"start":269,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":957,"start":869,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":638,"start":586,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":397,"start":382,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1109,"start":1061,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":370,"start":363,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":670,"start":615,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":425,"start":328,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":589,"start":583,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":303,"start":259,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":242,"start":209,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":316,"start":269,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":14},{"feature_index":2,"overlap_bases":2}],"query_bed":[225,240],"query_length":15,"union_overlap_bases":15},"family":"overlapping_blocks","fingerprint":"9146400419b0479baa96a2d416a1068b234244ffaea1751dd0d1dfdad05fce5d","group_id":"9146400419b0479baa96a2d416a1068b234244ffaea1751dd0d1dfdad05fce5d","id":"INTERVALS-0012857","index":12857,"input":{"contigs":{"synthetic_A":1004,"synthetic_B":1044},"features":[{"basis":"one_closed","contig":"synthetic_A","end":228,"start":223,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":240,"start":226,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":243,"start":239,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":453,"start":359,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":555,"start":457,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":710,"start":698,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":276,"start":276,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":469,"start":365,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":373,"start":271,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":607,"start":533,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":61,"start":59,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":240,"start":226,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":66},{"feature_index":1,"overlap_bases":64},{"feature_index":7,"overlap_bases":31}],"query_bed":[412,478],"query_length":66,"union_overlap_bases":66},"family":"nested","fingerprint":"483d4484ef1c66f7b3abe85ce8644ab78580cbd3d6c65cf526ba9ccb394aba47","group_id":"483d4484ef1c66f7b3abe85ce8644ab78580cbd3d6c65cf526ba9ccb394aba47","id":"INTERVALS-0012861","index":12861,"input":{"contigs":{"synthetic_A":892,"synthetic_B":814},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":483,"start":407,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":477,"start":413,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":592,"start":526,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":180,"start":152,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":125,"start":25,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":652,"start":552,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":443,"start":333,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":444,"start":413,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":205,"start":98,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":478,"start":413,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":17},{"feature_index":2,"overlap_bases":2}],"query_bed":[576,594],"query_length":18,"union_overlap_bases":18},"family":"overlapping_blocks","fingerprint":"9f69241c7f479999b940b3c1bca841a21d0dafcd89318d60e995d3fd3cd890fb","group_id":"9f69241c7f479999b940b3c1bca841a21d0dafcd89318d60e995d3fd3cd890fb","id":"INTERVALS-0012862","index":12862,"input":{"contigs":{"synthetic_A":1000,"synthetic_B":604},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":579,"start":573,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":594,"start":577,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":597,"start":593,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":876,"start":845,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":871,"start":764,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":123,"start":36,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":594,"start":576,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":69}],"query_bed":[251,320],"query_length":69,"union_overlap_bases":69},"family":"stranded","fingerprint":"49acce20f722f06cb6bc18214557c918f571c0bb6b0fec2db9fb99d269de9d69","group_id":"49acce20f722f06cb6bc18214557c918f571c0bb6b0fec2db9fb99d269de9d69","id":"INTERVALS-0012868","index":12868,"input":{"contigs":{"synthetic_A":961,"synthetic_B":1265},"features":[{"basis":"one_closed","contig":"synthetic_A","end":320,"start":252,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":320,"start":252,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":274,"start":164,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":882,"start":811,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":521,"start":450,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":562,"start":460,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":324,"start":254,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":320,"start":252,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":18}],"query_bed":[517,535],"query_length":18,"union_overlap_bases":18},"family":"stranded","fingerprint":"3435a0f8fe206c9b918f24cb4137d5eb39355e6ecfdfefe28e2519ae79862dfa","group_id":"3435a0f8fe206c9b918f24cb4137d5eb39355e6ecfdfefe28e2519ae79862dfa","id":"INTERVALS-0012878","index":12878,"input":{"contigs":{"synthetic_A":930,"synthetic_B":819},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":535,"start":517,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":535,"start":517,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":877,"start":809,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":369,"start":281,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":137,"start":116,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":491,"start":446,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":535,"start":517,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":54}],"query_bed":[169,223],"query_length":54,"union_overlap_bases":54},"family":"coordinate_conversion","fingerprint":"044d783443f1fb573b5e2f274d9b3f038f93da42dc92e234494d7306f635557b","group_id":"044d783443f1fb573b5e2f274d9b3f038f93da42dc92e234494d7306f635557b","id":"INTERVALS-0012899","index":12899,"input":{"contigs":{"synthetic_A":720,"synthetic_B":726},"features":[{"basis":"one_closed","contig":"synthetic_B","end":223,"start":170,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":311,"start":195,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":589,"start":505,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":436,"start":345,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":560,"start":495,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":216,"start":109,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":450,"start":444,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":223,"start":170,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[941,975],"query_length":34,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"16fdd38450d4f31b00ca71da33386f57cde80b754b1f6023c173af1eac3ff95c","group_id":"16fdd38450d4f31b00ca71da33386f57cde80b754b1f6023c173af1eac3ff95c","id":"INTERVALS-0012900","index":12900,"input":{"contigs":{"synthetic_A":1715,"synthetic_B":901},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":941,"start":935,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1004,"start":976,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":220,"start":204,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":335,"start":264,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":353,"start":288,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":324,"start":264,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":131,"start":117,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":975,"start":941,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":53},{"feature_index":2,"overlap_bases":2}],"query_bed":[363,417],"query_length":54,"union_overlap_bases":54},"family":"overlapping_blocks","fingerprint":"5d819a48776d1655128d45acb523ff4b6ef2f738163db4be64e287f18a278350","group_id":"5d819a48776d1655128d45acb523ff4b6ef2f738163db4be64e287f18a278350","id":"INTERVALS-0012917","index":12917,"input":{"contigs":{"synthetic_A":992,"synthetic_B":1584},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":366,"start":360,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":417,"start":365,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":420,"start":415,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":276,"start":208,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":839,"start":839,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":343,"start":224,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":87,"start":9,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":939,"start":895,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1360,"start":1351,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":626,"start":539,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":417,"start":364,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":52}],"query_bed":[497,549],"query_length":52,"union_overlap_bases":52},"family":"coordinate_conversion","fingerprint":"3af3825c102df83ca9f2a49a1924a0591338adeec5541b39cd10f019dc75a582","group_id":"3af3825c102df83ca9f2a49a1924a0591338adeec5541b39cd10f019dc75a582","id":"INTERVALS-0012924","index":12924,"input":{"contigs":{"synthetic_A":1352,"synthetic_B":845},"features":[{"basis":"one_closed","contig":"synthetic_B","end":549,"start":498,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":989,"start":921,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":785,"start":705,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1120,"start":1026,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":487,"start":396,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":113,"start":100,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":439,"start":354,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":696,"start":678,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":686,"start":581,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":549,"start":498,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":55}],"query_bed":[70,125],"query_length":55,"union_overlap_bases":55},"family":"coordinate_conversion","fingerprint":"22a5fe64224423e6af495defd3b146cb49b3e1c4251957d9c33be4aec65f4afa","group_id":"22a5fe64224423e6af495defd3b146cb49b3e1c4251957d9c33be4aec65f4afa","id":"INTERVALS-0012944","index":12944,"input":{"contigs":{"synthetic_A":1338,"synthetic_B":689},"features":[{"basis":"one_closed","contig":"synthetic_B","end":125,"start":71,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":56,"start":25,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":70,"start":33,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":246,"start":190,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":544,"start":463,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":40,"start":40,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":109,"start":30,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":328,"start":298,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":696,"start":596,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":125,"start":71,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":21},{"feature_index":2,"overlap_bases":2}],"query_bed":[627,649],"query_length":22,"union_overlap_bases":22},"family":"overlapping_blocks","fingerprint":"1964f8aacc263eb9ba1f15dc179469c08464803936e73a096a7aa4196478770c","group_id":"1964f8aacc263eb9ba1f15dc179469c08464803936e73a096a7aa4196478770c","id":"INTERVALS-0012947","index":12947,"input":{"contigs":{"synthetic_A":1799,"synthetic_B":1050},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":630,"start":624,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":649,"start":628,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":652,"start":648,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":425,"start":351,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":705,"start":665,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1182,"start":1144,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":597,"start":539,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":428,"start":394,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":649,"start":627,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":22}],"query_bed":[78,100],"query_length":22,"union_overlap_bases":22},"family":"coordinate_conversion","fingerprint":"89c054f0f49664ac5c9d52dc845fb474e1a1c178213a69f3f5165c8876ccf750","group_id":"89c054f0f49664ac5c9d52dc845fb474e1a1c178213a69f3f5165c8876ccf750","id":"INTERVALS-0012949","index":12949,"input":{"contigs":{"synthetic_A":1451,"synthetic_B":1251},"features":[{"basis":"one_closed","contig":"synthetic_B","end":100,"start":79,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1218,"start":1106,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":191,"start":187,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1254,"start":1225,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":47,"start":39,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":960,"start":887,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1088,"start":1066,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":219,"start":130,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":202,"start":98,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":893,"start":847,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":100,"start":79,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":76}],"query_bed":[892,968],"query_length":76,"union_overlap_bases":76},"family":"coordinate_conversion","fingerprint":"984cc17a6457c4ae9258f1527a8488b773bfa586dc410fc8b4e74520f465f8e7","group_id":"984cc17a6457c4ae9258f1527a8488b773bfa586dc410fc8b4e74520f465f8e7","id":"INTERVALS-0012954","index":12954,"input":{"contigs":{"synthetic_A":1281,"synthetic_B":782},"features":[{"basis":"one_closed","contig":"synthetic_A","end":968,"start":893,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":626,"start":599,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":354,"start":271,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":674,"start":622,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":233,"start":201,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":503,"start":424,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":606,"start":532,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":146,"start":125,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":968,"start":893,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":69}],"query_bed":[306,375],"query_length":69,"union_overlap_bases":69},"family":"coordinate_conversion","fingerprint":"882e49945c253350d4361e74ea588a811b0dd81b405fb9ffda6987f1d3e6131b","group_id":"882e49945c253350d4361e74ea588a811b0dd81b405fb9ffda6987f1d3e6131b","id":"INTERVALS-0012969","index":12969,"input":{"contigs":{"synthetic_A":1644,"synthetic_B":1578},"features":[{"basis":"one_closed","contig":"synthetic_B","end":375,"start":307,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1319,"start":1291,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":732,"start":728,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1180,"start":1106,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1524,"start":1503,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":879,"start":807,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1013,"start":901,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":550,"start":439,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":832,"start":776,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":375,"start":307,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":57},{"feature_index":1,"overlap_bases":55}],"query_bed":[770,827],"query_length":57,"union_overlap_bases":57},"family":"nested","fingerprint":"a44ae7540dbbc78b517faf134d6eec8d41f41221638b2c07433d386ee67a60eb","group_id":"a44ae7540dbbc78b517faf134d6eec8d41f41221638b2c07433d386ee67a60eb","id":"INTERVALS-0012991","index":12991,"input":{"contigs":{"synthetic_A":856,"synthetic_B":1548},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":832,"start":765,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":826,"start":771,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1183,"start":1068,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":362,"start":300,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":902,"start":885,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1184,"start":1110,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":661,"start":628,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1328,"start":1264,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":827,"start":770,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":60},{"feature_index":1,"overlap_bases":58}],"query_bed":[292,352],"query_length":60,"union_overlap_bases":60},"family":"nested","fingerprint":"22f2c88e6574d6a1b1ee0106f9cc4b55890cb5cb003cfb037f9f22d9ba659c71","group_id":"22f2c88e6574d6a1b1ee0106f9cc4b55890cb5cb003cfb037f9f22d9ba659c71","id":"INTERVALS-0012996","index":12996,"input":{"contigs":{"synthetic_A":1031,"synthetic_B":804},"features":[{"basis":"one_closed","contig":"synthetic_A","end":357,"start":288,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":351,"start":293,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":388,"start":363,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":697,"start":661,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":626,"start":570,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":534,"start":504,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":182,"start":99,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":277,"start":250,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":88,"start":79,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":273,"start":272,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":352,"start":292,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[32,69],"query_length":37,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"d2cd81b84aa29db8a495d7fcf316757a92bc1962ba7aa62e455a51f67494eee1","group_id":"d2cd81b84aa29db8a495d7fcf316757a92bc1962ba7aa62e455a51f67494eee1","id":"INTERVALS-0013015","index":13015,"input":{"contigs":{"synthetic_A":1236,"synthetic_B":1000},"features":[{"basis":"one_closed","contig":"synthetic_A","end":32,"start":16,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":103,"start":69,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":306,"start":294,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":454,"start":421,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":707,"start":677,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":824,"start":711,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":923,"start":908,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":861,"start":759,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":833,"start":799,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":960,"start":858,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":241,"start":200,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":69,"start":32,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":68},{"feature_index":5,"overlap_bases":61}],"query_bed":[232,300],"query_length":68,"union_overlap_bases":68},"family":"stranded","fingerprint":"ed86c74e8b432dd6d530efb79b0ef723b422b90289bce3a1df8918dec3300741","group_id":"ed86c74e8b432dd6d530efb79b0ef723b422b90289bce3a1df8918dec3300741","id":"INTERVALS-0013023","index":13023,"input":{"contigs":{"synthetic_A":1559,"synthetic_B":1162},"features":[{"basis":"one_closed","contig":"synthetic_B","end":300,"start":233,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":300,"start":233,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":456,"start":421,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":730,"start":611,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":176,"start":132,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":293,"start":189,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1025,"start":942,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":432,"start":324,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":300,"start":232,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":36},{"feature_index":2,"overlap_bases":2}],"query_bed":[1287,1324],"query_length":37,"union_overlap_bases":37},"family":"overlapping_blocks","fingerprint":"602a138892129be5464daba14b195733ab901235ac5d21f3df76103c63e9acfb","group_id":"602a138892129be5464daba14b195733ab901235ac5d21f3df76103c63e9acfb","id":"INTERVALS-0013027","index":13027,"input":{"contigs":{"synthetic_A":1727,"synthetic_B":1742},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1290,"start":1285,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1324,"start":1289,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1327,"start":1323,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":787,"start":774,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1112,"start":1105,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1324,"start":1288,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":5}],"query_bed":[354,359],"query_length":5,"union_overlap_bases":5},"family":"stranded","fingerprint":"02f2df7ea90acab1e9d8537630344e1e1598728dd5b8bee98f2f115c4c259d3c","group_id":"02f2df7ea90acab1e9d8537630344e1e1598728dd5b8bee98f2f115c4c259d3c","id":"INTERVALS-0013028","index":13028,"input":{"contigs":{"synthetic_A":867,"synthetic_B":759},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":359,"start":354,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":359,"start":355,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":336,"start":257,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":554,"start":438,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":431,"start":357,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":359,"start":354,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[317,323],"query_length":6,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"c5ace0e69a633d9145d2690a1e3e2e370d024dc681b734392d0644699e852b75","group_id":"c5ace0e69a633d9145d2690a1e3e2e370d024dc681b734392d0644699e852b75","id":"INTERVALS-0013040","index":13040,"input":{"contigs":{"synthetic_A":720,"synthetic_B":1525},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":317,"start":302,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":340,"start":324,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1156,"start":1054,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":449,"start":401,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1183,"start":1157,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":323,"start":318,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":26},{"feature_index":1,"overlap_bases":24},{"feature_index":2,"overlap_bases":26}],"query_bed":[386,412],"query_length":26,"union_overlap_bases":26},"family":"nested","fingerprint":"f70d8a1e34990e35cfa1ff24199be9951b1c8a4b632419792f9a74d378d2ca84","group_id":"f70d8a1e34990e35cfa1ff24199be9951b1c8a4b632419792f9a74d378d2ca84","id":"INTERVALS-0013051","index":13051,"input":{"contigs":{"synthetic_A":720,"synthetic_B":647},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":417,"start":381,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":411,"start":388,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":419,"start":377,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":516,"start":465,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":116,"start":82,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":329,"start":300,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":401,"start":398,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":412,"start":387,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":32},{"feature_index":2,"overlap_bases":2},{"feature_index":3,"overlap_bases":5},{"feature_index":6,"overlap_bases":15}],"query_bed":[980,1013],"query_length":33,"union_overlap_bases":33},"family":"overlapping_blocks","fingerprint":"4dde7a66b370e4d0a3d8f066ccd07721a29e1d459d07792d979922992a8ef97d","group_id":"4dde7a66b370e4d0a3d8f066ccd07721a29e1d459d07792d979922992a8ef97d","id":"INTERVALS-0013052","index":13052,"input":{"contigs":{"synthetic_A":1668,"synthetic_B":1227},"features":[{"basis":"one_closed","contig":"synthetic_B","end":983,"start":978,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1013,"start":981,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1016,"start":1012,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":985,"start":939,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1131,"start":1101,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1228,"start":1213,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":995,"start":953,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":485,"start":381,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":315,"start":285,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":811,"start":769,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":123,"start":44,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":235,"start":134,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1013,"start":981,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[83,114],"query_length":31,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"683eb33a34c1c9ef6b5bd4af9b331e29048d3776c9c15048313d677de337e520","group_id":"683eb33a34c1c9ef6b5bd4af9b331e29048d3776c9c15048313d677de337e520","id":"INTERVALS-0013065","index":13065,"input":{"contigs":{"synthetic_A":1782,"synthetic_B":1654},"features":[{"basis":"one_closed","contig":"synthetic_B","end":83,"start":76,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":131,"start":114,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":739,"start":712,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":802,"start":722,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":231,"start":230,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":411,"start":372,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":114,"start":84,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":17}],"query_bed":[227,244],"query_length":17,"union_overlap_bases":17},"family":"stranded","fingerprint":"29291352582de458a1972af6beb8733cfc3eee7cf4a01a8acdc7da284531715d","group_id":"29291352582de458a1972af6beb8733cfc3eee7cf4a01a8acdc7da284531715d","id":"INTERVALS-0013068","index":13068,"input":{"contigs":{"synthetic_A":1786,"synthetic_B":1372},"features":[{"basis":"one_closed","contig":"synthetic_B","end":244,"start":228,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":244,"start":227,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1438,"start":1421,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1105,"start":1054,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1106,"start":1058,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1053,"start":982,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":561,"start":557,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":244,"start":227,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":79}],"query_bed":[271,350],"query_length":79,"union_overlap_bases":79},"family":"coordinate_conversion","fingerprint":"1eb19eee956c4fea306986b6e28e1af482426ff8edfdf3082d7fbde958e6d941","group_id":"1eb19eee956c4fea306986b6e28e1af482426ff8edfdf3082d7fbde958e6d941","id":"INTERVALS-0013074","index":13074,"input":{"contigs":{"synthetic_A":823,"synthetic_B":796},"features":[{"basis":"one_closed","contig":"synthetic_A","end":350,"start":272,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":296,"start":209,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":489,"start":488,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":622,"start":601,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":281,"start":210,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":101,"start":72,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":183,"start":73,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":620,"start":576,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":797,"start":696,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":350,"start":272,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":69},{"feature_index":2,"overlap_bases":2},{"feature_index":4,"overlap_bases":66},{"feature_index":5,"overlap_bases":26}],"query_bed":[41,111],"query_length":70,"union_overlap_bases":70},"family":"overlapping_blocks","fingerprint":"4648f4ac666036665048c8a1375180e74d0d725e4c8f8f983f2381dba66c8418","group_id":"4648f4ac666036665048c8a1375180e74d0d725e4c8f8f983f2381dba66c8418","id":"INTERVALS-0013082","index":13082,"input":{"contigs":{"synthetic_A":851,"synthetic_B":1763},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":44,"start":38,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":111,"start":42,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":114,"start":110,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":626,"start":605,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":144,"start":46,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":131,"start":85,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":484,"start":476,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1557,"start":1450,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":257,"start":162,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":758,"start":646,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":255,"start":189,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":111,"start":42,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":19}],"query_bed":[150,169],"query_length":19,"union_overlap_bases":19},"family":"stranded","fingerprint":"c0484a64ddba6332633a86b8834441883fe8aca55275cd01b83d73422bc8694b","group_id":"c0484a64ddba6332633a86b8834441883fe8aca55275cd01b83d73422bc8694b","id":"INTERVALS-0013083","index":13083,"input":{"contigs":{"synthetic_A":784,"synthetic_B":1326},"features":[{"basis":"one_closed","contig":"synthetic_A","end":169,"start":151,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":169,"start":151,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":846,"start":743,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":614,"start":530,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":953,"start":892,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":289,"start":254,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":288,"start":223,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1085,"start":969,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":388,"start":309,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":134,"start":39,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":138,"start":41,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":242,"start":211,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":169,"start":151,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":5,"overlap_bases":1}],"query_bed":[190,222],"query_length":32,"union_overlap_bases":1},"family":"touching_boundary","fingerprint":"d3bf3daaea16a29089755539010106a503aa5e528234a2a302a18f7a401c4630","group_id":"d3bf3daaea16a29089755539010106a503aa5e528234a2a302a18f7a401c4630","id":"INTERVALS-0013090","index":13090,"input":{"contigs":{"synthetic_A":612,"synthetic_B":688},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":190,"start":172,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":261,"start":222,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":567,"start":517,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":555,"start":484,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":417,"start":387,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":191,"start":78,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":363,"start":268,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":388,"start":326,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":222,"start":190,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":55}],"query_bed":[242,297],"query_length":55,"union_overlap_bases":55},"family":"coordinate_conversion","fingerprint":"ed7544ba481cefe3e76c032a1c2d085fa6b6ae8afbef69da244e52726239114d","group_id":"ed7544ba481cefe3e76c032a1c2d085fa6b6ae8afbef69da244e52726239114d","id":"INTERVALS-0013094","index":13094,"input":{"contigs":{"synthetic_A":634,"synthetic_B":1467},"features":[{"basis":"one_closed","contig":"synthetic_A","end":297,"start":243,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":47,"start":22,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":196,"start":95,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":303,"start":296,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":441,"start":420,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1112,"start":1018,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":297,"start":243,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":69}],"query_bed":[1336,1405],"query_length":69,"union_overlap_bases":69},"family":"stranded","fingerprint":"b37bb438e450b142f35ee6ed05da39af1b67f650f279b53bb2259eaeecb1ee0a","group_id":"b37bb438e450b142f35ee6ed05da39af1b67f650f279b53bb2259eaeecb1ee0a","id":"INTERVALS-0013098","index":13098,"input":{"contigs":{"synthetic_A":975,"synthetic_B":1644},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1405,"start":1336,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1405,"start":1336,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":687,"start":642,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1614,"start":1509,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":628,"start":535,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":703,"start":636,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":493,"start":395,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":365,"start":364,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1405,"start":1336,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18}],"query_bed":[189,207],"query_length":18,"union_overlap_bases":18},"family":"coordinate_conversion","fingerprint":"bfb33e104a54052fb4cf84bcd5c95b5f8e387f6740b6d56f8cb75d82b4348778","group_id":"bfb33e104a54052fb4cf84bcd5c95b5f8e387f6740b6d56f8cb75d82b4348778","id":"INTERVALS-0013104","index":13104,"input":{"contigs":{"synthetic_A":912,"synthetic_B":1671},"features":[{"basis":"one_closed","contig":"synthetic_B","end":207,"start":190,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1625,"start":1523,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":24,"start":9,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":838,"start":768,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":825,"start":706,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":436,"start":368,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":738,"start":670,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":125,"start":16,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":511,"start":502,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":207,"start":190,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":61},{"feature_index":2,"overlap_bases":2}],"query_bed":[611,673],"query_length":62,"union_overlap_bases":62},"family":"overlapping_blocks","fingerprint":"2b3332c2f448b9be8fe3359c9d642e330ef5f9931290c76ca1990dacf5927d0e","group_id":"2b3332c2f448b9be8fe3359c9d642e330ef5f9931290c76ca1990dacf5927d0e","id":"INTERVALS-0013112","index":13112,"input":{"contigs":{"synthetic_A":1142,"synthetic_B":1009},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":614,"start":608,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":673,"start":612,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":676,"start":671,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":260,"start":144,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":216,"start":109,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":873,"start":789,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":584,"start":572,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":673,"start":611,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":3,"overlap_bases":24}],"query_bed":[1136,1180],"query_length":44,"union_overlap_bases":24},"family":"touching_boundary","fingerprint":"c1c8ceb884c582685a53cc10091349dec4ba74caaa4549545ac863f6b07fc8b2","group_id":"c1c8ceb884c582685a53cc10091349dec4ba74caaa4549545ac863f6b07fc8b2","id":"INTERVALS-0013115","index":13115,"input":{"contigs":{"synthetic_A":1112,"synthetic_B":1685},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1136,"start":1121,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1217,"start":1180,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1408,"start":1357,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1180,"start":1156,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1038,"start":1013,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":883,"start":880,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":812,"start":777,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1423,"start":1360,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":467,"start":375,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1028,"start":994,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":246,"start":158,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":115,"start":45,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1180,"start":1137,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":9,"overlap_bases":22}],"query_bed":[390,447],"query_length":57,"union_overlap_bases":22},"family":"touching_boundary","fingerprint":"d72008944653e0fde049d7e9e1451366d5e0ac9584f2fa31b650c1a18481deb2","group_id":"d72008944653e0fde049d7e9e1451366d5e0ac9584f2fa31b650c1a18481deb2","id":"INTERVALS-0013125","index":13125,"input":{"contigs":{"synthetic_A":945,"synthetic_B":955},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":390,"start":385,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":465,"start":447,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":752,"start":734,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":96,"start":1,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":127,"start":114,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":621,"start":594,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":741,"start":730,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":348,"start":282,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":49,"start":43,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":412,"start":303,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":298,"start":247,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":376,"start":332,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":447,"start":391,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":39}],"query_bed":[510,549],"query_length":39,"union_overlap_bases":39},"family":"coordinate_conversion","fingerprint":"f897f270c7aa2ef52a03d9f26122181ee0821291659ab75ff55bf6b483376dfd","group_id":"f897f270c7aa2ef52a03d9f26122181ee0821291659ab75ff55bf6b483376dfd","id":"INTERVALS-0013129","index":13129,"input":{"contigs":{"synthetic_A":1753,"synthetic_B":986},"features":[{"basis":"one_closed","contig":"synthetic_B","end":549,"start":511,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":659,"start":620,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":359,"start":246,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":321,"start":255,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":745,"start":718,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":430,"start":385,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":549,"start":511,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":75},{"feature_index":1,"overlap_bases":73}],"query_bed":[1356,1431],"query_length":75,"union_overlap_bases":75},"family":"nested","fingerprint":"0d6cc122e7bff979cbbc7d6172d06d031f87d910993b6902894b4bd3633ded01","group_id":"0d6cc122e7bff979cbbc7d6172d06d031f87d910993b6902894b4bd3633ded01","id":"INTERVALS-0013136","index":13136,"input":{"contigs":{"synthetic_A":1655,"synthetic_B":1651},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1436,"start":1352,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1430,"start":1358,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":861,"start":804,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":202,"start":186,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":361,"start":260,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1431,"start":1356,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":37}],"query_bed":[520,557],"query_length":37,"union_overlap_bases":37},"family":"stranded","fingerprint":"9e98afe45c13cdf5d38c6e4997514226ef49c78197f5b15dc303adb710c2e551","group_id":"9e98afe45c13cdf5d38c6e4997514226ef49c78197f5b15dc303adb710c2e551","id":"INTERVALS-0013138","index":13138,"input":{"contigs":{"synthetic_A":1511,"synthetic_B":1382},"features":[{"basis":"one_closed","contig":"synthetic_A","end":557,"start":521,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":557,"start":521,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1138,"start":1046,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":569,"start":563,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":409,"start":375,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1198,"start":1144,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":557,"start":521,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":68}],"query_bed":[258,326],"query_length":68,"union_overlap_bases":68},"family":"coordinate_conversion","fingerprint":"1328ba5884bf635a6ef29ea9c86770984b8937a9d61c8dce2c572e7afddf0956","group_id":"1328ba5884bf635a6ef29ea9c86770984b8937a9d61c8dce2c572e7afddf0956","id":"INTERVALS-0013139","index":13139,"input":{"contigs":{"synthetic_A":1626,"synthetic_B":1428},"features":[{"basis":"one_closed","contig":"synthetic_A","end":326,"start":259,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":949,"start":881,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1186,"start":1103,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":657,"start":566,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":833,"start":741,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1220,"start":1172,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":965,"start":903,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1083,"start":986,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":462,"start":448,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":326,"start":259,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":42},{"feature_index":1,"overlap_bases":40}],"query_bed":[523,565],"query_length":42,"union_overlap_bases":42},"family":"nested","fingerprint":"5b1f805803db969cedf16ec0f82f1e8b62424c04c36e568f2570a2f80f6142ec","group_id":"5b1f805803db969cedf16ec0f82f1e8b62424c04c36e568f2570a2f80f6142ec","id":"INTERVALS-0013161","index":13161,"input":{"contigs":{"synthetic_A":1264,"synthetic_B":1607},"features":[{"basis":"one_closed","contig":"synthetic_A","end":570,"start":519,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":564,"start":525,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":81,"start":18,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":476,"start":435,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":179,"start":138,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1216,"start":1201,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":970,"start":899,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":642,"start":525,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1280,"start":1218,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":822,"start":795,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1006,"start":993,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":387,"start":356,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":565,"start":524,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":66},{"feature_index":1,"overlap_bases":64},{"feature_index":2,"overlap_bases":9}],"query_bed":[504,570],"query_length":66,"union_overlap_bases":66},"family":"nested","fingerprint":"16fc0aa4f2beabe5e87efb736b64b6757d5442c0a127eb74c38cb2eacb27e85c","group_id":"16fc0aa4f2beabe5e87efb736b64b6757d5442c0a127eb74c38cb2eacb27e85c","id":"INTERVALS-0013166","index":13166,"input":{"contigs":{"synthetic_A":1230,"synthetic_B":1068},"features":[{"basis":"one_closed","contig":"synthetic_B","end":575,"start":500,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":569,"start":505,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":513,"start":466,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":787,"start":772,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":637,"start":623,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":205,"start":106,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":947,"start":855,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":996,"start":909,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":65,"start":2,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1202,"start":1083,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":570,"start":504,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":39}],"query_bed":[60,99],"query_length":39,"union_overlap_bases":39},"family":"coordinate_conversion","fingerprint":"4f9912b28bbce6c78f8673091a73640bc4ddfc3c9ceb1b969d2fac46b9b9a91b","group_id":"4f9912b28bbce6c78f8673091a73640bc4ddfc3c9ceb1b969d2fac46b9b9a91b","id":"INTERVALS-0013189","index":13189,"input":{"contigs":{"synthetic_A":1402,"synthetic_B":1662},"features":[{"basis":"one_closed","contig":"synthetic_A","end":99,"start":61,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":949,"start":859,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":338,"start":304,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":636,"start":599,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":66,"start":62,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1183,"start":1163,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1156,"start":1079,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1091,"start":1033,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":550,"start":530,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":99,"start":61,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":78}],"query_bed":[370,448],"query_length":78,"union_overlap_bases":78},"family":"stranded","fingerprint":"fa8939b86a956bfa40513dd46d78fde348ef36a6def967b951a7a93cb51d403e","group_id":"fa8939b86a956bfa40513dd46d78fde348ef36a6def967b951a7a93cb51d403e","id":"INTERVALS-0013193","index":13193,"input":{"contigs":{"synthetic_A":727,"synthetic_B":1091},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":448,"start":370,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":448,"start":371,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":806,"start":706,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":269,"start":235,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":180,"start":117,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":448,"start":371,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":39}],"query_bed":[112,151],"query_length":39,"union_overlap_bases":39},"family":"stranded","fingerprint":"beb570a04625dcde2090b70cf71359bee42947d20b4cf72dcc9cbae22bdbf9ee","group_id":"beb570a04625dcde2090b70cf71359bee42947d20b4cf72dcc9cbae22bdbf9ee","id":"INTERVALS-0013228","index":13228,"input":{"contigs":{"synthetic_A":1140,"synthetic_B":1385},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":151,"start":112,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":151,"start":112,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":274,"start":226,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":305,"start":206,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":784,"start":693,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":151,"start":112,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":26},{"feature_index":1,"overlap_bases":24},{"feature_index":5,"overlap_bases":5}],"query_bed":[541,567],"query_length":26,"union_overlap_bases":26},"family":"nested","fingerprint":"7c9c6f169f5dc70a1d244253b5760c83054a1ec14d3fff6c691ea1327affc4b7","group_id":"7c9c6f169f5dc70a1d244253b5760c83054a1ec14d3fff6c691ea1327affc4b7","id":"INTERVALS-0013241","index":13241,"input":{"contigs":{"synthetic_A":1123,"synthetic_B":1051},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":572,"start":536,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":566,"start":542,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":232,"start":168,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":473,"start":404,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":135,"start":22,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":607,"start":563,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":510,"start":496,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":904,"start":873,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":744,"start":687,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":541,"start":446,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":662,"start":584,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":567,"start":542,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":35},{"feature_index":1,"overlap_bases":33}],"query_bed":[467,502],"query_length":35,"union_overlap_bases":35},"family":"nested","fingerprint":"6f49d4e8eeff841461dc7c19a3e9f2495907a13889892ae251ce0ccc7a6ab093","group_id":"6f49d4e8eeff841461dc7c19a3e9f2495907a13889892ae251ce0ccc7a6ab093","id":"INTERVALS-0013246","index":13246,"input":{"contigs":{"synthetic_A":676,"synthetic_B":885},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":507,"start":462,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":501,"start":469,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":170,"start":163,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":225,"start":170,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":205,"start":149,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":350,"start":297,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":195,"start":138,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":498,"start":430,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":736,"start":657,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":502,"start":467,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[411,441],"query_length":30,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"49f5d0cac4c474163a4c57a85352b072a802f7b3c0d5078f696c948cf41d2b79","group_id":"49f5d0cac4c474163a4c57a85352b072a802f7b3c0d5078f696c948cf41d2b79","id":"INTERVALS-0013250","index":13250,"input":{"contigs":{"synthetic_A":1654,"synthetic_B":1595},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":411,"start":393,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":479,"start":442,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":614,"start":534,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":847,"start":820,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":744,"start":737,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1190,"start":1189,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":554,"start":470,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":925,"start":821,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":706,"start":700,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":441,"start":411,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":26}],"query_bed":[350,376],"query_length":26,"union_overlap_bases":26},"family":"coordinate_conversion","fingerprint":"509ceec2d8cd2b2bd83fb238b1a5d5e07d4ba404b263f5958214c5deb5d285bd","group_id":"509ceec2d8cd2b2bd83fb238b1a5d5e07d4ba404b263f5958214c5deb5d285bd","id":"INTERVALS-0013259","index":13259,"input":{"contigs":{"synthetic_A":932,"synthetic_B":886},"features":[{"basis":"one_closed","contig":"synthetic_B","end":376,"start":351,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":139,"start":66,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":496,"start":475,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":842,"start":805,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":178,"start":67,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":7,"start":1,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":106,"start":3,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":573,"start":493,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":204,"start":142,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":644,"start":535,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":566,"start":541,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":376,"start":351,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":47},{"feature_index":1,"overlap_bases":45}],"query_bed":[160,207],"query_length":47,"union_overlap_bases":47},"family":"nested","fingerprint":"09860e064ffaab4f7ba6e0078e24b3f2f9723c229acdd1516a7a147181d90c59","group_id":"09860e064ffaab4f7ba6e0078e24b3f2f9723c229acdd1516a7a147181d90c59","id":"INTERVALS-0013261","index":13261,"input":{"contigs":{"synthetic_A":1311,"synthetic_B":638},"features":[{"basis":"one_closed","contig":"synthetic_B","end":212,"start":156,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":206,"start":162,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":578,"start":508,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1086,"start":1042,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":471,"start":377,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":38,"start":27,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1081,"start":973,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":622,"start":507,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":474,"start":414,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":207,"start":160,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":10},{"feature_index":2,"overlap_bases":2}],"query_bed":[1017,1028],"query_length":11,"union_overlap_bases":11},"family":"overlapping_blocks","fingerprint":"5596e2dec1995316248c884890788dc32745afffa382d00fe7324f89a0b1195b","group_id":"5596e2dec1995316248c884890788dc32745afffa382d00fe7324f89a0b1195b","id":"INTERVALS-0013267","index":13267,"input":{"contigs":{"synthetic_A":1490,"synthetic_B":1118},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1020,"start":1014,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1028,"start":1018,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1031,"start":1026,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":285,"start":261,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":433,"start":419,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":659,"start":614,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1028,"start":1018,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":8},{"feature_index":2,"overlap_bases":2}],"query_bed":[443,452],"query_length":9,"union_overlap_bases":9},"family":"overlapping_blocks","fingerprint":"951dc62aec3aeae0711c2bfd388af0efaaca78f1bb9d8b04fe06223a98b4ff59","group_id":"951dc62aec3aeae0711c2bfd388af0efaaca78f1bb9d8b04fe06223a98b4ff59","id":"INTERVALS-0013272","index":13272,"input":{"contigs":{"synthetic_A":653,"synthetic_B":693},"features":[{"basis":"one_closed","contig":"synthetic_A","end":446,"start":441,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":452,"start":444,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":455,"start":451,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":67,"start":43,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":202,"start":189,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":98,"start":60,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":173,"start":144,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":159,"start":80,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":533,"start":417,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":600,"start":560,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":659,"start":546,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":485,"start":413,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":452,"start":444,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[353,416],"query_length":63,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"c42ed5e4dd6354c24691aca647c03e61ebcdeb766c320961cd37de70d5c77639","group_id":"c42ed5e4dd6354c24691aca647c03e61ebcdeb766c320961cd37de70d5c77639","id":"INTERVALS-0013275","index":13275,"input":{"contigs":{"synthetic_A":1423,"synthetic_B":1612},"features":[{"basis":"one_closed","contig":"synthetic_A","end":353,"start":346,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":455,"start":417,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":50,"start":39,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":399,"start":309,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1130,"start":1089,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1285,"start":1229,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":416,"start":354,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":77},{"feature_index":1,"overlap_bases":75}],"query_bed":[159,236],"query_length":77,"union_overlap_bases":77},"family":"nested","fingerprint":"b815f670565975005a4414298d827d33ffbb669cc96506f755ca51e6363bb841","group_id":"b815f670565975005a4414298d827d33ffbb669cc96506f755ca51e6363bb841","id":"INTERVALS-0013276","index":13276,"input":{"contigs":{"synthetic_A":1195,"synthetic_B":998},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":241,"start":154,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":235,"start":161,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":257,"start":159,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":126,"start":121,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1144,"start":1039,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":769,"start":741,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":622,"start":516,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1073,"start":1006,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":338,"start":266,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":271,"start":258,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":372,"start":346,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":236,"start":160,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":52}],"query_bed":[1027,1079],"query_length":52,"union_overlap_bases":52},"family":"stranded","fingerprint":"974e27faa654e4026b0c14e9d100805b334b0d5db0d4614cbe34813de7abfec0","group_id":"974e27faa654e4026b0c14e9d100805b334b0d5db0d4614cbe34813de7abfec0","id":"INTERVALS-0013288","index":13288,"input":{"contigs":{"synthetic_A":1440,"synthetic_B":942},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1079,"start":1027,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1079,"start":1028,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":624,"start":524,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":298,"start":264,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":11,"start":5,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":356,"start":283,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":585,"start":482,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":270,"start":261,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":130,"start":73,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":517,"start":479,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":970,"start":884,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":109,"start":13,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1079,"start":1027,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":41},{"feature_index":2,"overlap_bases":2}],"query_bed":[333,375],"query_length":42,"union_overlap_bases":42},"family":"overlapping_blocks","fingerprint":"24ec3364d377514ec75b94fe89437ac2a79921bccdd65091ccee83ad2364f502","group_id":"24ec3364d377514ec75b94fe89437ac2a79921bccdd65091ccee83ad2364f502","id":"INTERVALS-0013297","index":13297,"input":{"contigs":{"synthetic_A":648,"synthetic_B":991},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":336,"start":330,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":375,"start":335,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":378,"start":373,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":279,"start":163,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":153,"start":72,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":469,"start":384,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":375,"start":334,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":9}],"query_bed":[22,31],"query_length":9,"union_overlap_bases":9},"family":"stranded","fingerprint":"c939349426ad9487220842d76663f6666b2bc7f266f1d4d6f60ec1834a11fff0","group_id":"c939349426ad9487220842d76663f6666b2bc7f266f1d4d6f60ec1834a11fff0","id":"INTERVALS-0013303","index":13303,"input":{"contigs":{"synthetic_A":927,"synthetic_B":1790},"features":[{"basis":"one_closed","contig":"synthetic_B","end":31,"start":23,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":31,"start":22,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":384,"start":326,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":389,"start":270,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":476,"start":445,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":620,"start":599,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1478,"start":1384,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":140,"start":94,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1101,"start":994,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":31,"start":22,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":6,"overlap_bases":31},{"feature_index":10,"overlap_bases":9}],"query_bed":[1043,1110],"query_length":67,"union_overlap_bases":31},"family":"touching_boundary","fingerprint":"846130384b53d38f4a0b06073071ea884ba970e141184db4311d12eecbc4ac7a","group_id":"846130384b53d38f4a0b06073071ea884ba970e141184db4311d12eecbc4ac7a","id":"INTERVALS-0013315","index":13315,"input":{"contigs":{"synthetic_A":1371,"synthetic_B":1586},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1043,"start":1038,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1123,"start":1110,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1219,"start":1131,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":354,"start":346,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":565,"start":484,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":853,"start":827,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1180,"start":1080,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1306,"start":1212,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":173,"start":162,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":446,"start":411,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1095,"start":1086,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":845,"start":814,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1110,"start":1044,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":13},{"feature_index":2,"overlap_bases":2},{"feature_index":4,"overlap_bases":3}],"query_bed":[948,962],"query_length":14,"union_overlap_bases":14},"family":"overlapping_blocks","fingerprint":"2deeca12ca9f75c5e882467eee404f9e85f0f84226c95326d25a974b052f7bd5","group_id":"2deeca12ca9f75c5e882467eee404f9e85f0f84226c95326d25a974b052f7bd5","id":"INTERVALS-0013327","index":13327,"input":{"contigs":{"synthetic_A":1204,"synthetic_B":1492},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":951,"start":945,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":962,"start":950,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":965,"start":961,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":218,"start":200,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":951,"start":922,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":83,"start":27,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":916,"start":842,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":805,"start":795,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":201,"start":112,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":962,"start":948,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[297,307],"query_length":10,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"58d8587ec52c8de2ebf1848f87bb5ca93738b58525a6cdd88f5152c9b117871f","group_id":"58d8587ec52c8de2ebf1848f87bb5ca93738b58525a6cdd88f5152c9b117871f","id":"INTERVALS-0013335","index":13335,"input":{"contigs":{"synthetic_A":1242,"synthetic_B":1112},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":297,"start":292,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":316,"start":308,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":478,"start":473,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":982,"start":976,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":518,"start":513,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":713,"start":620,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":666,"start":624,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":207,"start":124,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":796,"start":744,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":591,"start":587,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1083,"start":1077,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":824,"start":761,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":307,"start":297,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":67},{"feature_index":2,"overlap_bases":2}],"query_bed":[583,651],"query_length":68,"union_overlap_bases":68},"family":"overlapping_blocks","fingerprint":"6f653508ac91638a8915a24967af4e78b3e4951493c3c1a9fc6a120f6266b89d","group_id":"6f653508ac91638a8915a24967af4e78b3e4951493c3c1a9fc6a120f6266b89d","id":"INTERVALS-0013337","index":13337,"input":{"contigs":{"synthetic_A":1564,"synthetic_B":1073},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":586,"start":580,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":651,"start":584,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":654,"start":650,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":705,"start":703,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":751,"start":671,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":867,"start":768,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":872,"start":841,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":280,"start":236,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1249,"start":1209,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":415,"start":331,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":651,"start":584,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":58},{"feature_index":2,"overlap_bases":2}],"query_bed":[118,177],"query_length":59,"union_overlap_bases":59},"family":"overlapping_blocks","fingerprint":"b99f4bccda865186e9c69974da7d23993985e4fcc0c4f4f140989f4e9c3e1bd7","group_id":"b99f4bccda865186e9c69974da7d23993985e4fcc0c4f4f140989f4e9c3e1bd7","id":"INTERVALS-0013342","index":13342,"input":{"contigs":{"synthetic_A":1249,"synthetic_B":600},"features":[{"basis":"one_closed","contig":"synthetic_B","end":121,"start":116,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":177,"start":120,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":180,"start":176,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":430,"start":359,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":608,"start":495,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":999,"start":953,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":402,"start":292,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":177,"start":119,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":9},{"feature_index":1,"overlap_bases":7}],"query_bed":[318,327],"query_length":9,"union_overlap_bases":9},"family":"nested","fingerprint":"f99701f2eccb1e2b9d28266693ac25febc8a7b84fafb232b694c08e84653ba8b","group_id":"f99701f2eccb1e2b9d28266693ac25febc8a7b84fafb232b694c08e84653ba8b","id":"INTERVALS-0013356","index":13356,"input":{"contigs":{"synthetic_A":1232,"synthetic_B":659},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":332,"start":313,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":326,"start":319,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":245,"start":187,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":509,"start":402,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":967,"start":888,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":366,"start":304,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":623,"start":506,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":351,"start":319,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":177,"start":100,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":614,"start":502,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":449,"start":339,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":461,"start":431,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":327,"start":319,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":42},{"feature_index":2,"overlap_bases":2}],"query_bed":[490,533],"query_length":43,"union_overlap_bases":43},"family":"overlapping_blocks","fingerprint":"3e7a3fba5fa8208560305647fd5748863862dd836ded0ef644f3c877cbfda43b","group_id":"3e7a3fba5fa8208560305647fd5748863862dd836ded0ef644f3c877cbfda43b","id":"INTERVALS-0013357","index":13357,"input":{"contigs":{"synthetic_A":769,"synthetic_B":835},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":493,"start":487,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":533,"start":492,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":536,"start":531,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":231,"start":222,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":690,"start":600,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":490,"start":393,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":533,"start":490,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":77},{"feature_index":1,"overlap_bases":75},{"feature_index":6,"overlap_bases":23}],"query_bed":[366,443],"query_length":77,"union_overlap_bases":77},"family":"nested","fingerprint":"3c6a16a004991b0489afd1574ebc8d80f4b5e7fdf85b6adea246a246f0cd5bf2","group_id":"3c6a16a004991b0489afd1574ebc8d80f4b5e7fdf85b6adea246a246f0cd5bf2","id":"INTERVALS-0013366","index":13366,"input":{"contigs":{"synthetic_A":611,"synthetic_B":1662},"features":[{"basis":"one_closed","contig":"synthetic_A","end":448,"start":362,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":442,"start":368,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":465,"start":356,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1211,"start":1160,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":318,"start":300,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1175,"start":1080,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":471,"start":420,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":441,"start":360,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":503,"start":432,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":526,"start":486,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1199,"start":1106,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":443,"start":367,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":39}],"query_bed":[24,63],"query_length":39,"union_overlap_bases":39},"family":"stranded","fingerprint":"fd9a7e8276699da1328e275cc63826dfb8d34e1c917fb773652d7212340b7f4f","group_id":"fd9a7e8276699da1328e275cc63826dfb8d34e1c917fb773652d7212340b7f4f","id":"INTERVALS-0013368","index":13368,"input":{"contigs":{"synthetic_A":1324,"synthetic_B":613},"features":[{"basis":"one_closed","contig":"synthetic_B","end":63,"start":25,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":63,"start":24,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":564,"start":517,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1224,"start":1111,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":351,"start":299,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":425,"start":380,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":63,"start":25,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":49},{"feature_index":2,"overlap_bases":2}],"query_bed":[189,239],"query_length":50,"union_overlap_bases":50},"family":"overlapping_blocks","fingerprint":"b824d4ecd7f374b9fe1619c0e7a2457be0d6869b17b41e3d87f18e2e6c4dd78e","group_id":"b824d4ecd7f374b9fe1619c0e7a2457be0d6869b17b41e3d87f18e2e6c4dd78e","id":"INTERVALS-0013377","index":13377,"input":{"contigs":{"synthetic_A":756,"synthetic_B":751},"features":[{"basis":"one_closed","contig":"synthetic_B","end":192,"start":187,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":239,"start":190,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":242,"start":237,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":636,"start":565,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":115,"start":9,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":228,"start":173,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":525,"start":459,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":314,"start":197,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":239,"start":189,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[487,538],"query_length":51,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"ccb994249ef4df63a18099dda6f8214d25b45bcec90d7aecfacebe77f2e97a2b","group_id":"ccb994249ef4df63a18099dda6f8214d25b45bcec90d7aecfacebe77f2e97a2b","id":"INTERVALS-0013395","index":13395,"input":{"contigs":{"synthetic_A":1761,"synthetic_B":1457},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":487,"start":469,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":570,"start":539,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":378,"start":268,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":285,"start":210,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":252,"start":228,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":538,"start":488,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":4},{"feature_index":2,"overlap_bases":2}],"query_bed":[345,350],"query_length":5,"union_overlap_bases":5},"family":"overlapping_blocks","fingerprint":"43a60abef5d53da428cbeba11fc0afb142b6ab0877569346e47ad53e99de56b1","group_id":"43a60abef5d53da428cbeba11fc0afb142b6ab0877569346e47ad53e99de56b1","id":"INTERVALS-0013397","index":13397,"input":{"contigs":{"synthetic_A":1710,"synthetic_B":1651},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":348,"start":342,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":350,"start":346,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":353,"start":349,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":288,"start":237,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":722,"start":673,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1247,"start":1166,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":604,"start":534,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":704,"start":639,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":801,"start":704,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":174,"start":146,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":350,"start":345,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[510,541],"query_length":31,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"93156f7cacd9b720eed6155dc2a6cf3b5d18683e6d8de6f2c6a02970d705066e","group_id":"93156f7cacd9b720eed6155dc2a6cf3b5d18683e6d8de6f2c6a02970d705066e","id":"INTERVALS-0013400","index":13400,"input":{"contigs":{"synthetic_A":1786,"synthetic_B":1298},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":510,"start":496,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":560,"start":542,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":254,"start":195,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":111,"start":10,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":452,"start":353,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1097,"start":1023,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1066,"start":997,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":541,"start":510,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":40}],"query_bed":[526,566],"query_length":40,"union_overlap_bases":40},"family":"stranded","fingerprint":"eabe528e85d51240bc67a0edd93936eb08dbcc77d18be6bbe9bce906045b0379","group_id":"eabe528e85d51240bc67a0edd93936eb08dbcc77d18be6bbe9bce906045b0379","id":"INTERVALS-0013403","index":13403,"input":{"contigs":{"synthetic_A":1513,"synthetic_B":1199},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":566,"start":526,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":566,"start":526,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1130,"start":1065,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":685,"start":651,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":996,"start":902,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":702,"start":601,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":493,"start":464,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1056,"start":1030,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":566,"start":527,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":67}],"query_bed":[227,294],"query_length":67,"union_overlap_bases":67},"family":"coordinate_conversion","fingerprint":"88938e4eed8344f95c6c0f55d2aa8417939c852d490f4df7de1185005b185b9d","group_id":"88938e4eed8344f95c6c0f55d2aa8417939c852d490f4df7de1185005b185b9d","id":"INTERVALS-0013434","index":13434,"input":{"contigs":{"synthetic_A":1723,"synthetic_B":1740},"features":[{"basis":"one_closed","contig":"synthetic_A","end":294,"start":228,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":840,"start":731,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":419,"start":382,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1051,"start":1007,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":623,"start":516,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":939,"start":914,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":294,"start":228,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":5}],"query_bed":[701,706],"query_length":5,"union_overlap_bases":5},"family":"stranded","fingerprint":"7baedd5ad9020190adc3605c3f9ffd41e342379bc08e7ecd04918befad8dadf0","group_id":"7baedd5ad9020190adc3605c3f9ffd41e342379bc08e7ecd04918befad8dadf0","id":"INTERVALS-0013443","index":13443,"input":{"contigs":{"synthetic_A":1078,"synthetic_B":1511},"features":[{"basis":"one_closed","contig":"synthetic_B","end":706,"start":702,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":706,"start":702,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1019,"start":917,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":294,"start":218,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":956,"start":917,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":206,"start":205,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1111,"start":1017,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":744,"start":703,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":658,"start":612,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":706,"start":702,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":20}],"query_bed":[1041,1061],"query_length":20,"union_overlap_bases":20},"family":"stranded","fingerprint":"10b656a4a0ef5d13b1c224396bc5ce45e2bf111bf290e52a5002245e2d5b37d7","group_id":"10b656a4a0ef5d13b1c224396bc5ce45e2bf111bf290e52a5002245e2d5b37d7","id":"INTERVALS-0013453","index":13453,"input":{"contigs":{"synthetic_A":1092,"synthetic_B":1304},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1061,"start":1042,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1061,"start":1041,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":233,"start":223,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":611,"start":504,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":70,"start":23,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":567,"start":518,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":959,"start":955,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":478,"start":423,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":153,"start":36,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":937,"start":829,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":129,"start":118,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1061,"start":1042,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":17},{"feature_index":2,"overlap_bases":2}],"query_bed":[768,786],"query_length":18,"union_overlap_bases":18},"family":"overlapping_blocks","fingerprint":"e89c78d23e6002a939a8b36266ddd85e2ee4d180accf9cb6ab7b5d3566cb01ff","group_id":"e89c78d23e6002a939a8b36266ddd85e2ee4d180accf9cb6ab7b5d3566cb01ff","id":"INTERVALS-0013457","index":13457,"input":{"contigs":{"synthetic_A":1580,"synthetic_B":1197},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":771,"start":765,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":786,"start":770,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":789,"start":784,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":640,"start":616,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":392,"start":272,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":635,"start":634,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":879,"start":827,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":773,"start":690,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":786,"start":768,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":53}],"query_bed":[939,992],"query_length":53,"union_overlap_bases":53},"family":"stranded","fingerprint":"1b8f092cb0773ad8dbe06e203d5790c539dafb6268f255865e3edaf72196b546","group_id":"1b8f092cb0773ad8dbe06e203d5790c539dafb6268f255865e3edaf72196b546","id":"INTERVALS-0013458","index":13458,"input":{"contigs":{"synthetic_A":1530,"synthetic_B":1374},"features":[{"basis":"one_closed","contig":"synthetic_A","end":992,"start":940,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":992,"start":939,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1334,"start":1262,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":961,"start":895,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":633,"start":528,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":448,"start":343,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":98,"start":53,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":545,"start":523,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":992,"start":939,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1161,1218],"query_length":57,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"16de8c2c9ce034f9748a16293075afc7213a2b364d4d5aff69cc585614dfa0d7","group_id":"16de8c2c9ce034f9748a16293075afc7213a2b364d4d5aff69cc585614dfa0d7","id":"INTERVALS-0013480","index":13480,"input":{"contigs":{"synthetic_A":654,"synthetic_B":1650},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1161,"start":1146,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1230,"start":1218,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":787,"start":726,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":326,"start":240,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":402,"start":388,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":371,"start":369,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":353,"start":320,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1042,"start":1014,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1218,"start":1161,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":17}],"query_bed":[91,108],"query_length":17,"union_overlap_bases":17},"family":"stranded","fingerprint":"d1966256f2a79cb970a339e97a761062df42efdd73ff3dae292244db091776de","group_id":"d1966256f2a79cb970a339e97a761062df42efdd73ff3dae292244db091776de","id":"INTERVALS-0013483","index":13483,"input":{"contigs":{"synthetic_A":1116,"synthetic_B":699},"features":[{"basis":"one_closed","contig":"synthetic_B","end":108,"start":92,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":108,"start":91,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":421,"start":321,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":554,"start":503,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":166,"start":136,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":169,"start":107,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":413,"start":330,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":589,"start":481,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":201,"start":199,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":108,"start":91,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56},{"feature_index":3,"overlap_bases":8}],"query_bed":[552,608],"query_length":56,"union_overlap_bases":56},"family":"coordinate_conversion","fingerprint":"acc210101ad696a86b324dbb26e8f13b981eda37bd7bf2e31533e81ea707ff91","group_id":"acc210101ad696a86b324dbb26e8f13b981eda37bd7bf2e31533e81ea707ff91","id":"INTERVALS-0013484","index":13484,"input":{"contigs":{"synthetic_A":1167,"synthetic_B":1408},"features":[{"basis":"one_closed","contig":"synthetic_A","end":608,"start":553,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1047,"start":1010,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1341,"start":1227,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":648,"start":601,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":260,"start":245,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":470,"start":425,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":156,"start":154,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":999,"start":988,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":61,"start":49,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":608,"start":553,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73}],"query_bed":[522,595],"query_length":73,"union_overlap_bases":73},"family":"coordinate_conversion","fingerprint":"475a229e2223a209de0002923426e90b3a517230b2477338714af47ab30e1da3","group_id":"475a229e2223a209de0002923426e90b3a517230b2477338714af47ab30e1da3","id":"INTERVALS-0013489","index":13489,"input":{"contigs":{"synthetic_A":985,"synthetic_B":1750},"features":[{"basis":"one_closed","contig":"synthetic_B","end":595,"start":523,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1056,"start":1032,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":158,"start":84,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1606,"start":1600,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":847,"start":780,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":595,"start":523,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[514,589],"query_length":75,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"4b725ed2c023f03f18b8bac7d0e41b41901b93509db857bb694bc955e2d325be","group_id":"4b725ed2c023f03f18b8bac7d0e41b41901b93509db857bb694bc955e2d325be","id":"INTERVALS-0013490","index":13490,"input":{"contigs":{"synthetic_A":1328,"synthetic_B":1010},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":514,"start":503,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":625,"start":590,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":115,"start":111,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":169,"start":67,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":164,"start":110,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1200,"start":1113,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1208,"start":1124,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":589,"start":515,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":58}],"query_bed":[150,208],"query_length":58,"union_overlap_bases":58},"family":"stranded","fingerprint":"dae42c1c2096adbae8be94a198430e922cbe16ad1876f5b89eb884d07394666d","group_id":"dae42c1c2096adbae8be94a198430e922cbe16ad1876f5b89eb884d07394666d","id":"INTERVALS-0013493","index":13493,"input":{"contigs":{"synthetic_A":1777,"synthetic_B":970},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":208,"start":150,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":208,"start":150,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":379,"start":265,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":533,"start":426,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":371,"start":357,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":345,"start":244,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":815,"start":804,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1188,"start":1081,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":298,"start":199,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":595,"start":517,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":208,"start":150,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":53}],"query_bed":[768,821],"query_length":53,"union_overlap_bases":53},"family":"coordinate_conversion","fingerprint":"5a5ce7aa92a4f871b0c04dc49a6fcd68d8b289b7b7a721b305aabc499b956ffd","group_id":"5a5ce7aa92a4f871b0c04dc49a6fcd68d8b289b7b7a721b305aabc499b956ffd","id":"INTERVALS-0013499","index":13499,"input":{"contigs":{"synthetic_A":777,"synthetic_B":1236},"features":[{"basis":"one_closed","contig":"synthetic_B","end":821,"start":769,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":694,"start":615,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1102,"start":1004,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":790,"start":748,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":414,"start":346,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":56,"start":21,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":241,"start":122,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":821,"start":769,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":72},{"feature_index":1,"overlap_bases":70}],"query_bed":[584,656],"query_length":72,"union_overlap_bases":72},"family":"nested","fingerprint":"5f963e9c512544977af6f1b38ea1e3ecee08da61f688c7e4d2cb0a455433e1db","group_id":"5f963e9c512544977af6f1b38ea1e3ecee08da61f688c7e4d2cb0a455433e1db","id":"INTERVALS-0013506","index":13506,"input":{"contigs":{"synthetic_A":706,"synthetic_B":810},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":661,"start":579,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":655,"start":586,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":249,"start":248,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":181,"start":76,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":216,"start":129,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":656,"start":584,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":21}],"query_bed":[97,118],"query_length":21,"union_overlap_bases":21},"family":"stranded","fingerprint":"a4455b72b776a38d528d8930368061064584f65f0e1c764a10a03f9aaed4ddf9","group_id":"a4455b72b776a38d528d8930368061064584f65f0e1c764a10a03f9aaed4ddf9","id":"INTERVALS-0013508","index":13508,"input":{"contigs":{"synthetic_A":1295,"synthetic_B":1778},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":118,"start":97,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":118,"start":98,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":536,"start":508,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1116,"start":1035,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1092,"start":1051,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":874,"start":838,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":162,"start":122,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":160,"start":60,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":765,"start":700,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":503,"start":407,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":760,"start":675,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":390,"start":275,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":118,"start":97,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":30},{"feature_index":2,"overlap_bases":2}],"query_bed":[359,390],"query_length":31,"union_overlap_bases":31},"family":"overlapping_blocks","fingerprint":"58bb1da4ae544ba311dabbfc36d0ba6d16903f6ab81a6695aec2c942f36be2a2","group_id":"58bb1da4ae544ba311dabbfc36d0ba6d16903f6ab81a6695aec2c942f36be2a2","id":"INTERVALS-0013512","index":13512,"input":{"contigs":{"synthetic_A":776,"synthetic_B":806},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":362,"start":356,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":390,"start":361,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":393,"start":388,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":478,"start":425,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":533,"start":415,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":657,"start":555,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":91,"start":2,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":610,"start":506,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":237,"start":234,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":141,"start":40,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":390,"start":360,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":26},{"feature_index":1,"overlap_bases":24}],"query_bed":[332,358],"query_length":26,"union_overlap_bases":26},"family":"nested","fingerprint":"d425cd360e85750a9e678ca609a0c3041bb83cc3ec785798473ad17f982b0911","group_id":"d425cd360e85750a9e678ca609a0c3041bb83cc3ec785798473ad17f982b0911","id":"INTERVALS-0013521","index":13521,"input":{"contigs":{"synthetic_A":1629,"synthetic_B":1745},"features":[{"basis":"one_closed","contig":"synthetic_A","end":363,"start":328,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":357,"start":333,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1131,"start":1070,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":897,"start":852,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":153,"start":96,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1436,"start":1347,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1392,"start":1369,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":676,"start":634,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1330,"start":1329,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":592,"start":559,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":358,"start":332,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":55},{"feature_index":2,"overlap_bases":55}],"query_bed":[289,344],"query_length":55,"union_overlap_bases":55},"family":"stranded","fingerprint":"f8a1d22c067e1a081e3c97baf09235b4f734c29a4c1f9fd375f7293a25aa3f8d","group_id":"f8a1d22c067e1a081e3c97baf09235b4f734c29a4c1f9fd375f7293a25aa3f8d","id":"INTERVALS-0013533","index":13533,"input":{"contigs":{"synthetic_A":746,"synthetic_B":1298},"features":[{"basis":"one_closed","contig":"synthetic_A","end":344,"start":290,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":344,"start":290,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":359,"start":264,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":494,"start":391,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":183,"start":121,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":112,"start":45,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":51,"start":19,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":477,"start":377,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":272,"start":233,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1124,"start":1079,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":488,"start":443,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":344,"start":290,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":10}],"query_bed":[443,453],"query_length":10,"union_overlap_bases":10},"family":"stranded","fingerprint":"bd02128661079e1eddaf758b7be8103996ce1abd76eb1760016bcf7c0e3b4eeb","group_id":"bd02128661079e1eddaf758b7be8103996ce1abd76eb1760016bcf7c0e3b4eeb","id":"INTERVALS-0013538","index":13538,"input":{"contigs":{"synthetic_A":773,"synthetic_B":977},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":453,"start":443,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":453,"start":443,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":133,"start":112,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":431,"start":313,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":253,"start":225,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":746,"start":721,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":863,"start":842,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":560,"start":558,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":205,"start":130,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":471,"start":455,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":251,"start":170,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":412,"start":353,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":453,"start":444,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1029,1064],"query_length":35,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"caf03774fc6279ffcf72c3f0f653c7644aeadd27c6ff298cc0a28222022d6841","group_id":"caf03774fc6279ffcf72c3f0f653c7644aeadd27c6ff298cc0a28222022d6841","id":"INTERVALS-0013540","index":13540,"input":{"contigs":{"synthetic_A":1328,"synthetic_B":1092},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1029,"start":1018,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1094,"start":1064,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":879,"start":875,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":84,"start":40,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":672,"start":635,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":121,"start":96,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":927,"start":866,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":104,"start":18,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":361,"start":346,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1183,"start":1072,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1064,"start":1029,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":47},{"feature_index":2,"overlap_bases":2}],"query_bed":[632,680],"query_length":48,"union_overlap_bases":48},"family":"overlapping_blocks","fingerprint":"09e85c640f5094798d436362f78368268e5e2724da6bf872ce858a464fb12f30","group_id":"09e85c640f5094798d436362f78368268e5e2724da6bf872ce858a464fb12f30","id":"INTERVALS-0013542","index":13542,"input":{"contigs":{"synthetic_A":622,"synthetic_B":1312},"features":[{"basis":"one_closed","contig":"synthetic_B","end":635,"start":630,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":680,"start":633,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":683,"start":678,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":50,"start":15,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":508,"start":395,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":680,"start":633,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":31}],"query_bed":[713,744],"query_length":31,"union_overlap_bases":31},"family":"stranded","fingerprint":"5ebdfc8a5f3bab6d46a94266c0e4dd5493471c39f576eb976a5ba09ffe1b5df9","group_id":"5ebdfc8a5f3bab6d46a94266c0e4dd5493471c39f576eb976a5ba09ffe1b5df9","id":"INTERVALS-0013578","index":13578,"input":{"contigs":{"synthetic_A":1772,"synthetic_B":1357},"features":[{"basis":"one_closed","contig":"synthetic_B","end":744,"start":714,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":744,"start":713,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1105,"start":1059,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1111,"start":1078,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":538,"start":470,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1595,"start":1532,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":983,"start":877,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":477,"start":401,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":744,"start":714,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":66},{"feature_index":10,"overlap_bases":46}],"query_bed":[154,220],"query_length":66,"union_overlap_bases":66},"family":"stranded","fingerprint":"4701fcccd55640d6d55af38fd1507b0173bdceef8a52ed3163858d169d8eb4de","group_id":"4701fcccd55640d6d55af38fd1507b0173bdceef8a52ed3163858d169d8eb4de","id":"INTERVALS-0013608","index":13608,"input":{"contigs":{"synthetic_A":1601,"synthetic_B":602},"features":[{"basis":"one_closed","contig":"synthetic_B","end":220,"start":155,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":220,"start":155,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":55,"start":42,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":979,"start":868,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":402,"start":391,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":357,"start":355,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":569,"start":559,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":454,"start":444,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":234,"start":214,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":270,"start":235,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":200,"start":151,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":220,"start":155,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":70},{"feature_index":1,"overlap_bases":68}],"query_bed":[82,152],"query_length":70,"union_overlap_bases":70},"family":"nested","fingerprint":"809bc6d4e88a3e5df0a7bb84ffce27239dfc537fe1de4311ab27ad24e1dd5923","group_id":"809bc6d4e88a3e5df0a7bb84ffce27239dfc537fe1de4311ab27ad24e1dd5923","id":"INTERVALS-0013611","index":13611,"input":{"contigs":{"synthetic_A":1718,"synthetic_B":642},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":157,"start":77,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":151,"start":84,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":299,"start":226,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":324,"start":260,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":267,"start":236,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1305,"start":1223,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1273,"start":1182,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":152,"start":83,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":63},{"feature_index":2,"overlap_bases":42},{"feature_index":5,"overlap_bases":14}],"query_bed":[666,729],"query_length":63,"union_overlap_bases":63},"family":"coordinate_conversion","fingerprint":"1911fe6651dd47d693947173243893d4ce10fecd5dee59fba7970a62374024cf","group_id":"1911fe6651dd47d693947173243893d4ce10fecd5dee59fba7970a62374024cf","id":"INTERVALS-0013614","index":13614,"input":{"contigs":{"synthetic_A":1289,"synthetic_B":1018},"features":[{"basis":"one_closed","contig":"synthetic_B","end":729,"start":667,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":750,"start":681,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":739,"start":688,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":794,"start":679,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":622,"start":583,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":680,"start":641,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":372,"start":309,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":591,"start":503,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":256,"start":196,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":729,"start":667,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":25},{"feature_index":1,"overlap_bases":23}],"query_bed":[603,628],"query_length":25,"union_overlap_bases":25},"family":"nested","fingerprint":"bcaee6a6ddc0d1974bcb773724915b5db87273cfdee6d72b8db582704b4a9930","group_id":"bcaee6a6ddc0d1974bcb773724915b5db87273cfdee6d72b8db582704b4a9930","id":"INTERVALS-0013626","index":13626,"input":{"contigs":{"synthetic_A":756,"synthetic_B":1590},"features":[{"basis":"one_closed","contig":"synthetic_B","end":633,"start":599,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":627,"start":605,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":642,"start":522,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":128,"start":51,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":365,"start":329,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1421,"start":1367,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":437,"start":424,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":864,"start":799,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":628,"start":603,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":11},{"feature_index":1,"overlap_bases":9},{"feature_index":5,"overlap_bases":1},{"feature_index":9,"overlap_bases":11}],"query_bed":[674,685],"query_length":11,"union_overlap_bases":11},"family":"nested","fingerprint":"12dc0ae65899e11665f270d8783dc9edd754e07f01214ab4aa4bc7da9cd5b395","group_id":"12dc0ae65899e11665f270d8783dc9edd754e07f01214ab4aa4bc7da9cd5b395","id":"INTERVALS-0013666","index":13666,"input":{"contigs":{"synthetic_A":1054,"synthetic_B":743},"features":[{"basis":"one_closed","contig":"synthetic_A","end":690,"start":670,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":684,"start":676,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":475,"start":421,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":179,"start":135,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":656,"start":581,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":760,"start":684,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":345,"start":227,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":373,"start":264,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":787,"start":780,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":705,"start":591,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":359,"start":260,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":685,"start":674,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[539,608],"query_length":69,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e0a9bb08207168542052f3d1794001e45231217799076c6f0aaac7e618560573","group_id":"e0a9bb08207168542052f3d1794001e45231217799076c6f0aaac7e618560573","id":"INTERVALS-0013675","index":13675,"input":{"contigs":{"synthetic_A":1267,"synthetic_B":1073},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":539,"start":524,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":625,"start":608,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":894,"start":831,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":475,"start":386,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":778,"start":745,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":868,"start":814,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":551,"start":486,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":945,"start":879,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":836,"start":821,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":232,"start":224,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":512,"start":408,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":68,"start":50,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":608,"start":539,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":15}],"query_bed":[316,331],"query_length":15,"union_overlap_bases":15},"family":"coordinate_conversion","fingerprint":"d48d5db6a09705d411f9ad7c4900fe5c65f8674d90a6f1e405ec66408dc42e0a","group_id":"d48d5db6a09705d411f9ad7c4900fe5c65f8674d90a6f1e405ec66408dc42e0a","id":"INTERVALS-0013694","index":13694,"input":{"contigs":{"synthetic_A":1535,"synthetic_B":1088},"features":[{"basis":"one_closed","contig":"synthetic_A","end":331,"start":317,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":352,"start":336,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":625,"start":544,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1289,"start":1241,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":964,"start":902,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1431,"start":1313,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1225,"start":1190,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":45,"start":34,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":815,"start":741,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":320,"start":308,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":870,"start":820,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":331,"start":317,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":42},{"feature_index":2,"overlap_bases":2}],"query_bed":[191,234],"query_length":43,"union_overlap_bases":43},"family":"overlapping_blocks","fingerprint":"4fe8be2a0d8b83deea6774f41730a33c2c83b8309c454c9a3734ccbe39dc91ad","group_id":"4fe8be2a0d8b83deea6774f41730a33c2c83b8309c454c9a3734ccbe39dc91ad","id":"INTERVALS-0013722","index":13722,"input":{"contigs":{"synthetic_A":1373,"synthetic_B":817},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":194,"start":188,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":234,"start":193,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":237,"start":232,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":633,"start":602,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":327,"start":227,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":573,"start":555,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":358,"start":274,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1050,"start":1038,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":976,"start":930,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":104,"start":46,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":234,"start":191,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":3,"overlap_bases":42}],"query_bed":[286,358],"query_length":72,"union_overlap_bases":42},"family":"touching_boundary","fingerprint":"453cc44421aa91869247939ee5a15cb89b32a9f1ffab278be661f5652e41ce72","group_id":"453cc44421aa91869247939ee5a15cb89b32a9f1ffab278be661f5652e41ce72","id":"INTERVALS-0013740","index":13740,"input":{"contigs":{"synthetic_A":1737,"synthetic_B":860},"features":[{"basis":"one_closed","contig":"synthetic_B","end":286,"start":270,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":380,"start":358,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":439,"start":417,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":328,"start":263,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":237,"start":133,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":65,"start":18,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":613,"start":542,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":300,"start":219,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1183,"start":1093,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":675,"start":639,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":358,"start":286,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":24},{"feature_index":2,"overlap_bases":24}],"query_bed":[343,367],"query_length":24,"union_overlap_bases":24},"family":"coordinate_conversion","fingerprint":"fd8aa89068f819ac565c62cf53895c6720b3dbcb6bffcd297aa77985ee22685e","group_id":"fd8aa89068f819ac565c62cf53895c6720b3dbcb6bffcd297aa77985ee22685e","id":"INTERVALS-0013754","index":13754,"input":{"contigs":{"synthetic_A":1603,"synthetic_B":1245},"features":[{"basis":"one_closed","contig":"synthetic_A","end":367,"start":344,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":736,"start":673,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":396,"start":305,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":135,"start":90,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":215,"start":150,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":367,"start":344,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":42},{"feature_index":2,"overlap_bases":2}],"query_bed":[775,818],"query_length":43,"union_overlap_bases":43},"family":"overlapping_blocks","fingerprint":"4ea019be0534008219b11bb24fc9cbf464704d973f40a457527509b598ec98aa","group_id":"4ea019be0534008219b11bb24fc9cbf464704d973f40a457527509b598ec98aa","id":"INTERVALS-0013767","index":13767,"input":{"contigs":{"synthetic_A":939,"synthetic_B":984},"features":[{"basis":"one_closed","contig":"synthetic_B","end":778,"start":773,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":818,"start":776,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":821,"start":816,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":385,"start":309,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":231,"start":205,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":818,"start":776,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":75},{"feature_index":2,"overlap_bases":2},{"feature_index":8,"overlap_bases":17}],"query_bed":[130,206],"query_length":76,"union_overlap_bases":76},"family":"overlapping_blocks","fingerprint":"cac610b6480b1dd2577769b71c8e9a600ba9f074a102e2dbd7a6d96ed4c6ebf7","group_id":"cac610b6480b1dd2577769b71c8e9a600ba9f074a102e2dbd7a6d96ed4c6ebf7","id":"INTERVALS-0013787","index":13787,"input":{"contigs":{"synthetic_A":1556,"synthetic_B":1422},"features":[{"basis":"one_closed","contig":"synthetic_B","end":133,"start":128,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":206,"start":132,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":209,"start":204,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1309,"start":1198,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":368,"start":265,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":116,"start":31,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":478,"start":379,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":653,"start":635,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":147,"start":39,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":985,"start":965,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1404,"start":1403,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":839,"start":726,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":206,"start":131,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":57},{"feature_index":2,"overlap_bases":2}],"query_bed":[419,477],"query_length":58,"union_overlap_bases":58},"family":"overlapping_blocks","fingerprint":"1ca2c63c5464eb70a064cc158d1fa3455c2bee6e84c2a86dc7704f4b168eac59","group_id":"1ca2c63c5464eb70a064cc158d1fa3455c2bee6e84c2a86dc7704f4b168eac59","id":"INTERVALS-0013797","index":13797,"input":{"contigs":{"synthetic_A":934,"synthetic_B":658},"features":[{"basis":"one_closed","contig":"synthetic_B","end":422,"start":417,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":477,"start":420,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":480,"start":476,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":194,"start":122,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":394,"start":343,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":524,"start":501,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":188,"start":176,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":128,"start":52,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":391,"start":339,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":477,"start":419,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":34}],"query_bed":[165,199],"query_length":34,"union_overlap_bases":34},"family":"stranded","fingerprint":"8b20ac00c14be1849acb683208c5b02b73b09ea0af24d4b97598e4577cf90871","group_id":"8b20ac00c14be1849acb683208c5b02b73b09ea0af24d4b97598e4577cf90871","id":"INTERVALS-0013798","index":13798,"input":{"contigs":{"synthetic_A":1290,"synthetic_B":905},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":199,"start":165,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":199,"start":165,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":773,"start":746,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":407,"start":380,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":922,"start":901,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":260,"start":222,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":199,"start":166,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":20},{"feature_index":2,"overlap_bases":2}],"query_bed":[513,534],"query_length":21,"union_overlap_bases":21},"family":"overlapping_blocks","fingerprint":"eb7f8e4a8640f49892304478c973187fa7621ed9559aa239e9be9bbb27bea7f5","group_id":"eb7f8e4a8640f49892304478c973187fa7621ed9559aa239e9be9bbb27bea7f5","id":"INTERVALS-0013827","index":13827,"input":{"contigs":{"synthetic_A":1505,"synthetic_B":1026},"features":[{"basis":"one_closed","contig":"synthetic_B","end":516,"start":511,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":534,"start":514,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":537,"start":532,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":335,"start":241,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":732,"start":621,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":184,"start":164,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":534,"start":513,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":77},{"feature_index":1,"overlap_bases":40}],"query_bed":[229,306],"query_length":77,"union_overlap_bases":77},"family":"coordinate_conversion","fingerprint":"68d8ded83df0d2702ac223ec241a52c669c7ec98dc05d9ad6920ed61d9e7e8e3","group_id":"68d8ded83df0d2702ac223ec241a52c669c7ec98dc05d9ad6920ed61d9e7e8e3","id":"INTERVALS-0013834","index":13834,"input":{"contigs":{"synthetic_A":829,"synthetic_B":959},"features":[{"basis":"one_closed","contig":"synthetic_B","end":306,"start":230,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":269,"start":208,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":222,"start":220,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":50,"start":38,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":221,"start":113,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":39,"start":17,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":597,"start":555,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":404,"start":296,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":199,"start":133,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":306,"start":230,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":35}],"query_bed":[29,64],"query_length":35,"union_overlap_bases":35},"family":"stranded","fingerprint":"ecaa8ac20de45171115c7a97cb4177bec3f003372c601f3d82e47b0bbb0bdcc9","group_id":"ecaa8ac20de45171115c7a97cb4177bec3f003372c601f3d82e47b0bbb0bdcc9","id":"INTERVALS-0013858","index":13858,"input":{"contigs":{"synthetic_A":974,"synthetic_B":1219},"features":[{"basis":"one_closed","contig":"synthetic_A","end":64,"start":30,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":64,"start":29,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":243,"start":211,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":772,"start":696,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":104,"start":34,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":671,"start":552,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":618,"start":502,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1100,"start":1004,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":420,"start":372,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":451,"start":431,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":949,"start":833,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":642,"start":613,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":64,"start":29,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":13},{"feature_index":2,"overlap_bases":2}],"query_bed":[236,250],"query_length":14,"union_overlap_bases":14},"family":"overlapping_blocks","fingerprint":"16ef067e2bbc6b676e79e0cd558d817e7ca7d9bd675b92cd843bdd11134fa2bb","group_id":"16ef067e2bbc6b676e79e0cd558d817e7ca7d9bd675b92cd843bdd11134fa2bb","id":"INTERVALS-0013927","index":13927,"input":{"contigs":{"synthetic_A":1389,"synthetic_B":1766},"features":[{"basis":"one_closed","contig":"synthetic_A","end":239,"start":234,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":250,"start":237,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":253,"start":248,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":465,"start":462,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":928,"start":920,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":250,"start":236,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73}],"query_bed":[971,1044],"query_length":73,"union_overlap_bases":73},"family":"stranded","fingerprint":"777b1ae60789565b716659e35afd0b0cb0844e5caac249859606e0ad7e8c8721","group_id":"777b1ae60789565b716659e35afd0b0cb0844e5caac249859606e0ad7e8c8721","id":"INTERVALS-0013928","index":13928,"input":{"contigs":{"synthetic_A":1030,"synthetic_B":1521},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1044,"start":972,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1044,"start":971,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":841,"start":793,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":342,"start":306,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":353,"start":309,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":95,"start":7,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":507,"start":399,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1044,"start":972,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":41},{"feature_index":1,"overlap_bases":39}],"query_bed":[291,332],"query_length":41,"union_overlap_bases":41},"family":"nested","fingerprint":"2c73c6d8570db00a1bbde5256df8602d125a94135a6b37cfe36e281e676a9dad","group_id":"2c73c6d8570db00a1bbde5256df8602d125a94135a6b37cfe36e281e676a9dad","id":"INTERVALS-0013941","index":13941,"input":{"contigs":{"synthetic_A":1497,"synthetic_B":1333},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":337,"start":286,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":331,"start":293,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":786,"start":730,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":747,"start":676,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":774,"start":689,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":104,"start":50,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1185,"start":1103,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1245,"start":1131,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":512,"start":462,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":332,"start":291,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":45}],"query_bed":[677,722],"query_length":45,"union_overlap_bases":45},"family":"stranded","fingerprint":"2c03a8b26b5b974e62397d3641cb32e0eab4d78762a7cdea22c203aa0d1bae7f","group_id":"2c03a8b26b5b974e62397d3641cb32e0eab4d78762a7cdea22c203aa0d1bae7f","id":"INTERVALS-0013968","index":13968,"input":{"contigs":{"synthetic_A":933,"synthetic_B":1391},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":722,"start":677,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":722,"start":677,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":791,"start":741,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":243,"start":154,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":388,"start":329,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":488,"start":439,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":722,"start":677,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32}],"query_bed":[127,159],"query_length":32,"union_overlap_bases":32},"family":"coordinate_conversion","fingerprint":"663b87e82bb462708ba3b8010c458ad5162a631826ac72b11dcdb2ad9b613b07","group_id":"663b87e82bb462708ba3b8010c458ad5162a631826ac72b11dcdb2ad9b613b07","id":"INTERVALS-0013969","index":13969,"input":{"contigs":{"synthetic_A":1192,"synthetic_B":738},"features":[{"basis":"one_closed","contig":"synthetic_A","end":159,"start":128,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1050,"start":960,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":520,"start":427,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":792,"start":732,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":152,"start":136,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":804,"start":789,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":126,"start":122,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":159,"start":128,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":21},{"feature_index":6,"overlap_bases":5}],"query_bed":[317,338],"query_length":21,"union_overlap_bases":21},"family":"stranded","fingerprint":"fba6e124265db519a5d48152503b35bf961a648c3641dc63543ce2719813b566","group_id":"fba6e124265db519a5d48152503b35bf961a648c3641dc63543ce2719813b566","id":"INTERVALS-0013973","index":13973,"input":{"contigs":{"synthetic_A":684,"synthetic_B":761},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":338,"start":317,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":338,"start":318,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":500,"start":438,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":24,"start":10,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":482,"start":415,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":236,"start":174,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":322,"start":243,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":338,"start":317,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":39},{"feature_index":9,"overlap_bases":25}],"query_bed":[138,177],"query_length":39,"union_overlap_bases":39},"family":"coordinate_conversion","fingerprint":"ed1e22d450920cceaf2267d24b29b265bcdc7932f235fab56e66c5495d19074b","group_id":"ed1e22d450920cceaf2267d24b29b265bcdc7932f235fab56e66c5495d19074b","id":"INTERVALS-0013974","index":13974,"input":{"contigs":{"synthetic_A":1412,"synthetic_B":1159},"features":[{"basis":"one_closed","contig":"synthetic_B","end":177,"start":139,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1145,"start":1027,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":505,"start":412,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":963,"start":956,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":301,"start":210,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":860,"start":776,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":962,"start":878,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":95,"start":10,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":525,"start":480,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":173,"start":149,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":458,"start":441,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":921,"start":914,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":177,"start":139,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[143,203],"query_length":60,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"fdaf5014dc5ad24753061dda9368d720077ac6d9a94d4d93e14fdeb9b6a62772","group_id":"fdaf5014dc5ad24753061dda9368d720077ac6d9a94d4d93e14fdeb9b6a62772","id":"INTERVALS-0013985","index":13985,"input":{"contigs":{"synthetic_A":1158,"synthetic_B":1623},"features":[{"basis":"one_closed","contig":"synthetic_B","end":143,"start":138,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":220,"start":203,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":517,"start":481,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":648,"start":534,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":310,"start":249,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":154,"start":149,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":203,"start":143,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":39},{"feature_index":1,"overlap_bases":37}],"query_bed":[84,123],"query_length":39,"union_overlap_bases":39},"family":"nested","fingerprint":"544a563686ed8ec313bcd7765237939be9f5efe61ef3646e0c77e4531714ad97","group_id":"544a563686ed8ec313bcd7765237939be9f5efe61ef3646e0c77e4531714ad97","id":"INTERVALS-0013986","index":13986,"input":{"contigs":{"synthetic_A":648,"synthetic_B":845},"features":[{"basis":"one_closed","contig":"synthetic_B","end":128,"start":80,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":122,"start":86,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":159,"start":124,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":422,"start":339,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":164,"start":147,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":504,"start":490,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":581,"start":529,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":173,"start":151,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":123,"start":84,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[688,766],"query_length":78,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"afdf0104d7733097b08d2e7531196c18ced8af218de663a6993a0bdb3198a434","group_id":"afdf0104d7733097b08d2e7531196c18ced8af218de663a6993a0bdb3198a434","id":"INTERVALS-0014030","index":14030,"input":{"contigs":{"synthetic_A":1444,"synthetic_B":1748},"features":[{"basis":"one_closed","contig":"synthetic_A","end":688,"start":683,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":767,"start":767,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":697,"start":612,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1296,"start":1212,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":548,"start":548,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1698,"start":1601,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1661,"start":1543,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":170,"start":52,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1276,"start":1193,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1024,"start":968,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":380,"start":293,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1265,"start":1236,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":766,"start":689,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":73},{"feature_index":7,"overlap_bases":21}],"query_bed":[420,493],"query_length":73,"union_overlap_bases":73},"family":"stranded","fingerprint":"ff9d0a746ea9f65a2c2e5b71c2d8ef30e5f1d0bc8a39c9b590e92bc7b766afbd","group_id":"ff9d0a746ea9f65a2c2e5b71c2d8ef30e5f1d0bc8a39c9b590e92bc7b766afbd","id":"INTERVALS-0014043","index":14043,"input":{"contigs":{"synthetic_A":807,"synthetic_B":1796},"features":[{"basis":"one_closed","contig":"synthetic_A","end":493,"start":421,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":493,"start":420,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":658,"start":596,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":605,"start":593,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1370,"start":1291,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":658,"start":567,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1664,"start":1647,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":530,"start":472,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":493,"start":421,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":22},{"feature_index":1,"overlap_bases":20}],"query_bed":[977,999],"query_length":22,"union_overlap_bases":22},"family":"nested","fingerprint":"c6aa50a0bab24065530d32169d62effba40edce8985b6aa50777a05674231f57","group_id":"c6aa50a0bab24065530d32169d62effba40edce8985b6aa50777a05674231f57","id":"INTERVALS-0014046","index":14046,"input":{"contigs":{"synthetic_A":1188,"synthetic_B":839},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1004,"start":972,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":998,"start":978,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":395,"start":333,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":157,"start":101,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":463,"start":366,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":609,"start":589,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":488,"start":396,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":112,"start":63,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":999,"start":978,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":63},{"feature_index":1,"overlap_bases":61},{"feature_index":2,"overlap_bases":36}],"query_bed":[276,339],"query_length":63,"union_overlap_bases":63},"family":"nested","fingerprint":"4d8094d24ff05a697f57d5dd242362747e7347eea49eadf6c13c673bb52fafac","group_id":"4d8094d24ff05a697f57d5dd242362747e7347eea49eadf6c13c673bb52fafac","id":"INTERVALS-0014056","index":14056,"input":{"contigs":{"synthetic_A":1456,"synthetic_B":1162},"features":[{"basis":"one_closed","contig":"synthetic_A","end":344,"start":272,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":338,"start":277,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":393,"start":304,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":979,"start":978,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":862,"start":840,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1248,"start":1183,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":368,"start":261,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":339,"start":277,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":54}],"query_bed":[390,444],"query_length":54,"union_overlap_bases":54},"family":"stranded","fingerprint":"d8ef50bcac2543076fa535324b6e474bc917faded5998de4a378dfa9646a9d35","group_id":"d8ef50bcac2543076fa535324b6e474bc917faded5998de4a378dfa9646a9d35","id":"INTERVALS-0014068","index":14068,"input":{"contigs":{"synthetic_A":1531,"synthetic_B":1776},"features":[{"basis":"one_closed","contig":"synthetic_B","end":444,"start":391,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":444,"start":390,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":898,"start":895,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":316,"start":214,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1078,"start":1062,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1292,"start":1205,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":444,"start":391,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18},{"feature_index":1,"overlap_bases":16}],"query_bed":[222,240],"query_length":18,"union_overlap_bases":18},"family":"nested","fingerprint":"b81aa904691dbb838f9a85b8cd143ca5c48cccc44899f584e64e3dc3e3317218","group_id":"b81aa904691dbb838f9a85b8cd143ca5c48cccc44899f584e64e3dc3e3317218","id":"INTERVALS-0014076","index":14076,"input":{"contigs":{"synthetic_A":832,"synthetic_B":891},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":245,"start":217,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":239,"start":224,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":349,"start":257,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":352,"start":334,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":491,"start":373,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":111,"start":15,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":565,"start":516,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":474,"start":358,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":663,"start":583,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":240,"start":223,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":28}],"query_bed":[874,902],"query_length":28,"union_overlap_bases":28},"family":"coordinate_conversion","fingerprint":"56ca8322f60cf691d852fc78458e15748c0b4bd326d71a835a224d9b793e4bdf","group_id":"56ca8322f60cf691d852fc78458e15748c0b4bd326d71a835a224d9b793e4bdf","id":"INTERVALS-0014084","index":14084,"input":{"contigs":{"synthetic_A":1262,"synthetic_B":844},"features":[{"basis":"one_closed","contig":"synthetic_A","end":902,"start":875,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":190,"start":89,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":409,"start":319,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":334,"start":252,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":716,"start":628,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":959,"start":875,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":452,"start":378,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":902,"start":875,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":21},{"feature_index":2,"overlap_bases":2}],"query_bed":[1099,1121],"query_length":22,"union_overlap_bases":22},"family":"overlapping_blocks","fingerprint":"f95741d4171d3155533a8738ab2d2a926073fe3c2a082cbb2e519a0b5d199f06","group_id":"f95741d4171d3155533a8738ab2d2a926073fe3c2a082cbb2e519a0b5d199f06","id":"INTERVALS-0014117","index":14117,"input":{"contigs":{"synthetic_A":1598,"synthetic_B":867},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1102,"start":1097,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1121,"start":1100,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1124,"start":1120,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":600,"start":506,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1343,"start":1313,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":570,"start":513,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":341,"start":294,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":754,"start":647,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":569,"start":504,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1121,"start":1100,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":9},{"feature_index":2,"overlap_bases":2}],"query_bed":[353,363],"query_length":10,"union_overlap_bases":10},"family":"overlapping_blocks","fingerprint":"4abf0d14dc5da9b92dd65a2f07fbdc3fa59f4a28974de4d869420f7b5c2118ef","group_id":"4abf0d14dc5da9b92dd65a2f07fbdc3fa59f4a28974de4d869420f7b5c2118ef","id":"INTERVALS-0014132","index":14132,"input":{"contigs":{"synthetic_A":1541,"synthetic_B":626},"features":[{"basis":"one_closed","contig":"synthetic_B","end":356,"start":351,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":363,"start":354,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":366,"start":362,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":407,"start":378,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":203,"start":155,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1272,"start":1196,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":363,"start":353,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":39}],"query_bed":[555,594],"query_length":39,"union_overlap_bases":39},"family":"coordinate_conversion","fingerprint":"d73ab946c5f4bfca5e4a46bec826afb4fe74b0d3f7aa8da44e15829e2e71090d","group_id":"d73ab946c5f4bfca5e4a46bec826afb4fe74b0d3f7aa8da44e15829e2e71090d","id":"INTERVALS-0014134","index":14134,"input":{"contigs":{"synthetic_A":933,"synthetic_B":1546},"features":[{"basis":"one_closed","contig":"synthetic_B","end":594,"start":556,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":743,"start":646,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":83,"start":59,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":136,"start":90,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1086,"start":1065,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1201,"start":1135,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":594,"start":556,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":8},{"feature_index":2,"overlap_bases":2}],"query_bed":[588,597],"query_length":9,"union_overlap_bases":9},"family":"overlapping_blocks","fingerprint":"c89f3f42381ad04141670e63bd93b18e1ded1a121806f8c8fef9aae63f7543a2","group_id":"c89f3f42381ad04141670e63bd93b18e1ded1a121806f8c8fef9aae63f7543a2","id":"INTERVALS-0014137","index":14137,"input":{"contigs":{"synthetic_A":948,"synthetic_B":1194},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":591,"start":585,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":597,"start":589,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":600,"start":596,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":239,"start":198,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":180,"start":128,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":248,"start":240,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1066,"start":994,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":803,"start":694,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":517,"start":401,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":815,"start":730,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":597,"start":589,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":74}],"query_bed":[539,613],"query_length":74,"union_overlap_bases":74},"family":"coordinate_conversion","fingerprint":"a769b21cf719325d4b3311b1718832794e9315ce77d5130f190d87fadcaf75c4","group_id":"a769b21cf719325d4b3311b1718832794e9315ce77d5130f190d87fadcaf75c4","id":"INTERVALS-0014144","index":14144,"input":{"contigs":{"synthetic_A":1221,"synthetic_B":1203},"features":[{"basis":"one_closed","contig":"synthetic_B","end":613,"start":540,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":491,"start":463,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":422,"start":379,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1025,"start":944,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":138,"start":35,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":305,"start":227,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":882,"start":778,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":455,"start":359,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1083,"start":1019,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":613,"start":540,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[873,883],"query_length":10,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"99ce43b6d9908bf874252ca8f80967bc85481c51d8277125256979fea1886af3","group_id":"99ce43b6d9908bf874252ca8f80967bc85481c51d8277125256979fea1886af3","id":"INTERVALS-0014145","index":14145,"input":{"contigs":{"synthetic_A":1667,"synthetic_B":1453},"features":[{"basis":"one_closed","contig":"synthetic_B","end":873,"start":855,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":901,"start":883,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":278,"start":175,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":986,"start":930,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":64,"start":2,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":638,"start":637,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":883,"start":874,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":56}],"query_bed":[684,740],"query_length":56,"union_overlap_bases":56},"family":"stranded","fingerprint":"dbd3f7a653f1204699bb586302c2ce8bc05c4915fc6e69186033e5f10e298448","group_id":"dbd3f7a653f1204699bb586302c2ce8bc05c4915fc6e69186033e5f10e298448","id":"INTERVALS-0014153","index":14153,"input":{"contigs":{"synthetic_A":1253,"synthetic_B":1737},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":740,"start":684,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":740,"start":685,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":492,"start":436,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":847,"start":759,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":931,"start":853,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":680,"start":577,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":453,"start":442,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":360,"start":263,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":655,"start":546,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":900,"start":859,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1466,"start":1433,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":443,"start":329,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":740,"start":684,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":76},{"feature_index":8,"overlap_bases":48}],"query_bed":[550,626],"query_length":76,"union_overlap_bases":76},"family":"stranded","fingerprint":"e511ba2e0cc3987eccc559cfb5f9af0b9b147bf2af51a6710ef9b45e76c93a53","group_id":"e511ba2e0cc3987eccc559cfb5f9af0b9b147bf2af51a6710ef9b45e76c93a53","id":"INTERVALS-0014158","index":14158,"input":{"contigs":{"synthetic_A":643,"synthetic_B":761},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":626,"start":550,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":626,"start":551,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":308,"start":281,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":309,"start":280,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":614,"start":595,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":383,"start":293,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":122,"start":111,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":248,"start":187,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":623,"start":575,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":253,"start":135,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":180,"start":116,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":626,"start":550,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":35},{"feature_index":2,"overlap_bases":2},{"feature_index":4,"overlap_bases":36}],"query_bed":[435,471],"query_length":36,"union_overlap_bases":36},"family":"overlapping_blocks","fingerprint":"6529498036c82de99286bd929e91605541d754426c55fb11f94f5b777501dfae","group_id":"6529498036c82de99286bd929e91605541d754426c55fb11f94f5b777501dfae","id":"INTERVALS-0014162","index":14162,"input":{"contigs":{"synthetic_A":1364,"synthetic_B":745},"features":[{"basis":"one_closed","contig":"synthetic_B","end":438,"start":433,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":471,"start":436,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":474,"start":469,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":576,"start":476,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":484,"start":436,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":705,"start":591,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":494,"start":468,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1273,"start":1231,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":305,"start":299,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":989,"start":988,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":439,"start":400,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":328,"start":323,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":471,"start":435,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":15}],"query_bed":[340,355],"query_length":15,"union_overlap_bases":15},"family":"coordinate_conversion","fingerprint":"b06f6c1c936e5c23cdf9e3faadad89164db3af344419b1c7413c140d3716e284","group_id":"b06f6c1c936e5c23cdf9e3faadad89164db3af344419b1c7413c140d3716e284","id":"INTERVALS-0014179","index":14179,"input":{"contigs":{"synthetic_A":601,"synthetic_B":1677},"features":[{"basis":"one_closed","contig":"synthetic_B","end":355,"start":341,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":220,"start":163,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":507,"start":446,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":540,"start":421,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":369,"start":286,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":181,"start":114,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1225,"start":1113,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":713,"start":624,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":355,"start":341,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[631,645],"query_length":14,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"fbf74b8c522d606d28b7200aa8601ba8b69fbf307a5374221ba974790d039975","group_id":"fbf74b8c522d606d28b7200aa8601ba8b69fbf307a5374221ba974790d039975","id":"INTERVALS-0014190","index":14190,"input":{"contigs":{"synthetic_A":1407,"synthetic_B":1661},"features":[{"basis":"one_closed","contig":"synthetic_B","end":631,"start":620,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":674,"start":646,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1447,"start":1330,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1122,"start":1107,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":979,"start":878,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":645,"start":631,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1286,1357],"query_length":71,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"860b32448905c8aa4f2617f0a75e0463e225886ba119a38dbae892bbdcd2a8f9","group_id":"860b32448905c8aa4f2617f0a75e0463e225886ba119a38dbae892bbdcd2a8f9","id":"INTERVALS-0014195","index":14195,"input":{"contigs":{"synthetic_A":846,"synthetic_B":1529},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1286,"start":1271,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1394,"start":1357,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":779,"start":684,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":221,"start":160,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":234,"start":122,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":654,"start":556,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":336,"start":306,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1357,"start":1286,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":40},{"feature_index":6,"overlap_bases":3}],"query_bed":[242,282],"query_length":40,"union_overlap_bases":40},"family":"coordinate_conversion","fingerprint":"1e36c980c9f51b44ddf434eeedfd844006fbf7394296ecab654943aa29ba225f","group_id":"1e36c980c9f51b44ddf434eeedfd844006fbf7394296ecab654943aa29ba225f","id":"INTERVALS-0014199","index":14199,"input":{"contigs":{"synthetic_A":1053,"synthetic_B":697},"features":[{"basis":"one_closed","contig":"synthetic_B","end":282,"start":243,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":558,"start":439,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":552,"start":531,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":361,"start":318,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":290,"start":240,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":390,"start":316,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":395,"start":280,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":588,"start":485,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":282,"start":243,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32},{"feature_index":1,"overlap_bases":30}],"query_bed":[226,258],"query_length":32,"union_overlap_bases":32},"family":"nested","fingerprint":"a371a6d841e4efd9cd710fb4220ded4b48854d6388222f810d230af6d0f1b96f","group_id":"a371a6d841e4efd9cd710fb4220ded4b48854d6388222f810d230af6d0f1b96f","id":"INTERVALS-0014216","index":14216,"input":{"contigs":{"synthetic_A":756,"synthetic_B":1550},"features":[{"basis":"one_closed","contig":"synthetic_A","end":263,"start":222,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":257,"start":227,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":368,"start":258,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":351,"start":329,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":330,"start":301,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":700,"start":639,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":377,"start":303,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":215,"start":193,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":258,"start":226,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[677,719],"query_length":42,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"648858869b6f8e641926fe419cf5be73853ed92fd41919dd04ceb14cdd710ba8","group_id":"648858869b6f8e641926fe419cf5be73853ed92fd41919dd04ceb14cdd710ba8","id":"INTERVALS-0014230","index":14230,"input":{"contigs":{"synthetic_A":882,"synthetic_B":1515},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":677,"start":669,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":722,"start":719,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":717,"start":657,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1462,"start":1387,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":715,"start":640,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":84,"start":1,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1018,"start":937,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":143,"start":131,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":719,"start":678,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[224,237],"query_length":13,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"295113acca3d1c4a04db5fb6f71e111f9ac411fe93861bb0cd278e3d9723c199","group_id":"295113acca3d1c4a04db5fb6f71e111f9ac411fe93861bb0cd278e3d9723c199","id":"INTERVALS-0014235","index":14235,"input":{"contigs":{"synthetic_A":840,"synthetic_B":840},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":224,"start":204,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":269,"start":238,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":249,"start":203,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":210,"start":159,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":129,"start":48,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":579,"start":503,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":460,"start":408,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":237,"start":225,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":29},{"feature_index":1,"overlap_bases":27}],"query_bed":[935,964],"query_length":29,"union_overlap_bases":29},"family":"nested","fingerprint":"cabdbcd6413733291f9b6f558460e0ea50c0b81d45938d96d42960db9ae1ebf5","group_id":"cabdbcd6413733291f9b6f558460e0ea50c0b81d45938d96d42960db9ae1ebf5","id":"INTERVALS-0014251","index":14251,"input":{"contigs":{"synthetic_A":1523,"synthetic_B":1201},"features":[{"basis":"one_closed","contig":"synthetic_A","end":969,"start":931,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":963,"start":937,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":569,"start":505,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1424,"start":1326,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":371,"start":351,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":492,"start":402,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":888,"start":826,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1235,"start":1176,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1141,"start":1073,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1076,"start":1064,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":554,"start":435,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":852,"start":831,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":964,"start":935,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[522,559],"query_length":37,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"2136add0704d4f748398272cabb647e51efbe58eda7272f28bbbfc22c98a975d","group_id":"2136add0704d4f748398272cabb647e51efbe58eda7272f28bbbfc22c98a975d","id":"INTERVALS-0014255","index":14255,"input":{"contigs":{"synthetic_A":1135,"synthetic_B":1175},"features":[{"basis":"one_closed","contig":"synthetic_A","end":522,"start":519,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":578,"start":560,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1098,"start":1038,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":70,"start":60,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":801,"start":752,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":559,"start":523,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":30}],"query_bed":[396,426],"query_length":30,"union_overlap_bases":30},"family":"stranded","fingerprint":"0b4576d281c489b4e3dab68f31c1e8de57fff1fcc032911b2bc4b2aba60b6739","group_id":"0b4576d281c489b4e3dab68f31c1e8de57fff1fcc032911b2bc4b2aba60b6739","id":"INTERVALS-0014258","index":14258,"input":{"contigs":{"synthetic_A":922,"synthetic_B":1632},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":426,"start":396,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":426,"start":396,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":145,"start":66,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1520,"start":1419,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1122,"start":1077,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1128,"start":1016,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":649,"start":608,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":426,"start":397,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":78},{"feature_index":2,"overlap_bases":2},{"feature_index":5,"overlap_bases":9}],"query_bed":[568,647],"query_length":79,"union_overlap_bases":79},"family":"overlapping_blocks","fingerprint":"8659155efa4e52f63a20b7bee12c455a55485d254930a70e12c4631951c29b7e","group_id":"8659155efa4e52f63a20b7bee12c455a55485d254930a70e12c4631951c29b7e","id":"INTERVALS-0014262","index":14262,"input":{"contigs":{"synthetic_A":1577,"synthetic_B":1090},"features":[{"basis":"one_closed","contig":"synthetic_B","end":571,"start":566,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":647,"start":570,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":650,"start":646,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":276,"start":252,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":697,"start":684,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":577,"start":549,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":647,"start":568,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":57}],"query_bed":[437,494],"query_length":57,"union_overlap_bases":57},"family":"stranded","fingerprint":"d18f6bea546e77d3dc0ca8f22a640cdc4af5e82357b7fa6fc3d427428918c167","group_id":"d18f6bea546e77d3dc0ca8f22a640cdc4af5e82357b7fa6fc3d427428918c167","id":"INTERVALS-0014288","index":14288,"input":{"contigs":{"synthetic_A":1697,"synthetic_B":1009},"features":[{"basis":"one_closed","contig":"synthetic_B","end":494,"start":438,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":494,"start":438,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":768,"start":702,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":130,"start":128,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":491,"start":442,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1619,"start":1538,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":494,"start":437,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[106,112],"query_length":6,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"ce70d4c6de0166e9fb4d79b38b441b5b21959c7b640a09d794415dc8fe15780f","group_id":"ce70d4c6de0166e9fb4d79b38b441b5b21959c7b640a09d794415dc8fe15780f","id":"INTERVALS-0014290","index":14290,"input":{"contigs":{"synthetic_A":1217,"synthetic_B":1715},"features":[{"basis":"one_closed","contig":"synthetic_A","end":106,"start":97,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":138,"start":112,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1520,"start":1459,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":744,"start":674,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":730,"start":724,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":680,"start":596,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1315,"start":1294,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1589,"start":1583,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":287,"start":191,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1274,"start":1183,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":917,"start":872,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":112,"start":106,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":64},{"feature_index":2,"overlap_bases":2}],"query_bed":[1021,1086],"query_length":65,"union_overlap_bases":65},"family":"overlapping_blocks","fingerprint":"2284129a0f604470f141c2f1fb2ac9a5014ac953a60f622f28ac910fda5877d0","group_id":"2284129a0f604470f141c2f1fb2ac9a5014ac953a60f622f28ac910fda5877d0","id":"INTERVALS-0014292","index":14292,"input":{"contigs":{"synthetic_A":652,"synthetic_B":1413},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1024,"start":1019,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1086,"start":1023,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1089,"start":1084,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":549,"start":530,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":383,"start":363,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":552,"start":516,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":438,"start":365,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1086,"start":1021,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":19}],"query_bed":[344,363],"query_length":19,"union_overlap_bases":19},"family":"stranded","fingerprint":"eb204c1ed8c2b5c0bfadbdb5b5606462a51964a68dd468a44af8281599557892","group_id":"eb204c1ed8c2b5c0bfadbdb5b5606462a51964a68dd468a44af8281599557892","id":"INTERVALS-0014293","index":14293,"input":{"contigs":{"synthetic_A":1033,"synthetic_B":1127},"features":[{"basis":"one_closed","contig":"synthetic_B","end":363,"start":345,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":363,"start":345,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":220,"start":208,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":815,"start":772,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":759,"start":711,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":452,"start":358,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":776,"start":758,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":565,"start":467,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":778,"start":726,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":363,"start":344,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":76},{"feature_index":2,"overlap_bases":2},{"feature_index":4,"overlap_bases":70}],"query_bed":[448,525],"query_length":77,"union_overlap_bases":77},"family":"overlapping_blocks","fingerprint":"005dd0e8241479e95f71eb28ce4dcb052379a4f0a9011fc8013a830f6050d5ab","group_id":"005dd0e8241479e95f71eb28ce4dcb052379a4f0a9011fc8013a830f6050d5ab","id":"INTERVALS-0014302","index":14302,"input":{"contigs":{"synthetic_A":698,"synthetic_B":956},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":451,"start":445,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":525,"start":450,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":528,"start":523,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":242,"start":194,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":530,"start":455,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":339,"start":234,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":128,"start":109,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":525,"start":448,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32},{"feature_index":2,"overlap_bases":26}],"query_bed":[151,183],"query_length":32,"union_overlap_bases":32},"family":"stranded","fingerprint":"c61954e221ed9b419840e6c43dc4fb55671a62ca2386976ba099fda1436a6d9f","group_id":"c61954e221ed9b419840e6c43dc4fb55671a62ca2386976ba099fda1436a6d9f","id":"INTERVALS-0014313","index":14313,"input":{"contigs":{"synthetic_A":1258,"synthetic_B":803},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":183,"start":151,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":183,"start":151,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":197,"start":157,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":586,"start":502,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":575,"start":568,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":556,"start":522,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":285,"start":173,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":313,"start":232,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1109,"start":1051,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":309,"start":238,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":646,"start":638,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":425,"start":379,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":183,"start":152,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":53},{"feature_index":5,"overlap_bases":52}],"query_bed":[1390,1443],"query_length":53,"union_overlap_bases":53},"family":"coordinate_conversion","fingerprint":"175ff2bc446f42645b043e75245d8459532e36a91a86fc9cc0cb019ce0835087","group_id":"175ff2bc446f42645b043e75245d8459532e36a91a86fc9cc0cb019ce0835087","id":"INTERVALS-0014314","index":14314,"input":{"contigs":{"synthetic_A":745,"synthetic_B":1595},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1443,"start":1391,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":198,"start":141,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":119,"start":114,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":258,"start":211,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":107,"start":9,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1508,"start":1392,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":261,"start":253,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1443,"start":1391,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[295,308],"query_length":13,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"0553f9ecaf15f92288f9500731ce3629c473d0aeb1f70b7fba0eaa8f02b6f2c8","group_id":"0553f9ecaf15f92288f9500731ce3629c473d0aeb1f70b7fba0eaa8f02b6f2c8","id":"INTERVALS-0014320","index":14320,"input":{"contigs":{"synthetic_A":632,"synthetic_B":957},"features":[{"basis":"one_closed","contig":"synthetic_A","end":295,"start":276,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":332,"start":309,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":106,"start":60,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":503,"start":464,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":171,"start":107,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":308,"start":296,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":36},{"feature_index":2,"overlap_bases":2}],"query_bed":[395,432],"query_length":37,"union_overlap_bases":37},"family":"overlapping_blocks","fingerprint":"28745412ca72cf7cbe5997b4b29a9aeca8ac641fa77f6180b8ff8e3878ae1b24","group_id":"28745412ca72cf7cbe5997b4b29a9aeca8ac641fa77f6180b8ff8e3878ae1b24","id":"INTERVALS-0014332","index":14332,"input":{"contigs":{"synthetic_A":1609,"synthetic_B":1382},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":398,"start":392,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":432,"start":396,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":435,"start":431,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":733,"start":679,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":599,"start":486,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1033,"start":994,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1220,"start":1175,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":601,"start":590,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":432,"start":396,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73}],"query_bed":[166,239],"query_length":73,"union_overlap_bases":73},"family":"coordinate_conversion","fingerprint":"52082e8ee9c5c09d61cbc3e4a9693e7abfdc1c29d179a4c4237f3b03bba7525c","group_id":"52082e8ee9c5c09d61cbc3e4a9693e7abfdc1c29d179a4c4237f3b03bba7525c","id":"INTERVALS-0014339","index":14339,"input":{"contigs":{"synthetic_A":1259,"synthetic_B":1141},"features":[{"basis":"one_closed","contig":"synthetic_A","end":239,"start":167,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":847,"start":763,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":488,"start":488,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":957,"start":936,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":145,"start":100,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":688,"start":659,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":171,"start":122,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":239,"start":167,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":38},{"feature_index":6,"overlap_bases":17}],"query_bed":[367,405],"query_length":38,"union_overlap_bases":38},"family":"stranded","fingerprint":"eb35a74e6f264453f0cec71acf1fc9d3f11ff9def8c8388a4445031b0a4ddf96","group_id":"eb35a74e6f264453f0cec71acf1fc9d3f11ff9def8c8388a4445031b0a4ddf96","id":"INTERVALS-0014343","index":14343,"input":{"contigs":{"synthetic_A":767,"synthetic_B":1333},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":405,"start":367,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":405,"start":368,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":408,"start":376,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":90,"start":20,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":295,"start":271,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":159,"start":86,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":482,"start":388,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":610,"start":576,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":405,"start":368,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":6},{"feature_index":1,"overlap_bases":4}],"query_bed":[359,365],"query_length":6,"union_overlap_bases":6},"family":"nested","fingerprint":"f3b0b9cc644fd9534f3279b8b17ff5caf6c9772035adda1281adf314c2c42ab3","group_id":"f3b0b9cc644fd9534f3279b8b17ff5caf6c9772035adda1281adf314c2c42ab3","id":"INTERVALS-0014351","index":14351,"input":{"contigs":{"synthetic_A":1012,"synthetic_B":735},"features":[{"basis":"one_closed","contig":"synthetic_A","end":370,"start":355,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":364,"start":361,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":615,"start":568,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":140,"start":108,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":401,"start":304,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":601,"start":600,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":248,"start":136,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":747,"start":700,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":365,"start":359,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":16}],"query_bed":[286,302],"query_length":16,"union_overlap_bases":16},"family":"coordinate_conversion","fingerprint":"9d874fb63b0e42a453cf6533130e66d2fd531fbce7cda1764f4bd1cf28e4d52d","group_id":"9d874fb63b0e42a453cf6533130e66d2fd531fbce7cda1764f4bd1cf28e4d52d","id":"INTERVALS-0014364","index":14364,"input":{"contigs":{"synthetic_A":724,"synthetic_B":1339},"features":[{"basis":"one_closed","contig":"synthetic_A","end":302,"start":287,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":920,"start":806,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":245,"start":150,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":120,"start":50,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":757,"start":703,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":471,"start":371,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":661,"start":590,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":703,"start":589,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":402,"start":299,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":548,"start":524,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":302,"start":287,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73},{"feature_index":1,"overlap_bases":71}],"query_bed":[307,380],"query_length":73,"union_overlap_bases":73},"family":"nested","fingerprint":"4840a9588e3f046a9ff1d4981f1ce6693ff4330f91ec99f1f10bfedbb7bd6417","group_id":"4840a9588e3f046a9ff1d4981f1ce6693ff4330f91ec99f1f10bfedbb7bd6417","id":"INTERVALS-0014371","index":14371,"input":{"contigs":{"synthetic_A":800,"synthetic_B":712},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":385,"start":302,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":379,"start":309,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":135,"start":92,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":671,"start":614,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":687,"start":642,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":380,"start":308,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46},{"feature_index":7,"overlap_bases":10}],"query_bed":[397,443],"query_length":46,"union_overlap_bases":46},"family":"coordinate_conversion","fingerprint":"9a239078dbcf670ec5fd5f7d747c112d78b49c1ba33ba4999aa7836671db9bf0","group_id":"9a239078dbcf670ec5fd5f7d747c112d78b49c1ba33ba4999aa7836671db9bf0","id":"INTERVALS-0014374","index":14374,"input":{"contigs":{"synthetic_A":657,"synthetic_B":1704},"features":[{"basis":"one_closed","contig":"synthetic_B","end":443,"start":398,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":210,"start":116,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1200,"start":1105,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":700,"start":601,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":72,"start":9,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":355,"start":305,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":523,"start":454,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":407,"start":296,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":381,"start":298,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":443,"start":398,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[852,928],"query_length":76,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"b02636f0212f347c54a13842aaa2b6e4b798f42972f133af66fd53c2d501fc1b","group_id":"b02636f0212f347c54a13842aaa2b6e4b798f42972f133af66fd53c2d501fc1b","id":"INTERVALS-0014430","index":14430,"input":{"contigs":{"synthetic_A":1516,"synthetic_B":1389},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":852,"start":834,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":937,"start":929,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":768,"start":729,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":474,"start":424,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":240,"start":176,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":995,"start":987,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":654,"start":622,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":443,"start":425,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1125,"start":1116,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":928,"start":853,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56},{"feature_index":6,"overlap_bases":6}],"query_bed":[564,620],"query_length":56,"union_overlap_bases":56},"family":"stranded","fingerprint":"72fc2f9690aa2dc02bb8fe9b34a38e66f257e6917f7c9eb1bed7d2a3220ee499","group_id":"72fc2f9690aa2dc02bb8fe9b34a38e66f257e6917f7c9eb1bed7d2a3220ee499","id":"INTERVALS-0014433","index":14433,"input":{"contigs":{"synthetic_A":1176,"synthetic_B":1453},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":620,"start":564,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":620,"start":565,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":606,"start":504,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":527,"start":511,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":569,"start":522,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":591,"start":551,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":719,"start":614,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":654,"start":536,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1077,"start":983,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":620,"start":564,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[57,115],"query_length":58,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"9e88bfbc1e4d523f452fc4bcddf7e5e2ed19795e5c532392c635fbf350fbc920","group_id":"9e88bfbc1e4d523f452fc4bcddf7e5e2ed19795e5c532392c635fbf350fbc920","id":"INTERVALS-0014450","index":14450,"input":{"contigs":{"synthetic_A":890,"synthetic_B":1448},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":57,"start":43,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":155,"start":116,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":463,"start":378,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":859,"start":765,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1144,"start":1136,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1066,"start":1012,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":308,"start":206,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":719,"start":609,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":115,"start":58,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":13},{"feature_index":2,"overlap_bases":2}],"query_bed":[354,368],"query_length":14,"union_overlap_bases":14},"family":"overlapping_blocks","fingerprint":"f98fdcd8d0d8f0f7feff67c21505b94c3a64bf7a95dd33d9bd402a42a6f9b560","group_id":"f98fdcd8d0d8f0f7feff67c21505b94c3a64bf7a95dd33d9bd402a42a6f9b560","id":"INTERVALS-0014452","index":14452,"input":{"contigs":{"synthetic_A":1491,"synthetic_B":1410},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":357,"start":351,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":368,"start":355,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":371,"start":367,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":404,"start":335,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1228,"start":1213,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":555,"start":546,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1055,"start":963,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1264,"start":1215,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":203,"start":98,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":884,"start":880,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":368,"start":354,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":61}],"query_bed":[1109,1170],"query_length":61,"union_overlap_bases":61},"family":"coordinate_conversion","fingerprint":"c60938e634cc48c95f9d083b59b45d00a998edfe82e08247519f6ba881b0e8cd","group_id":"c60938e634cc48c95f9d083b59b45d00a998edfe82e08247519f6ba881b0e8cd","id":"INTERVALS-0014454","index":14454,"input":{"contigs":{"synthetic_A":1656,"synthetic_B":1427},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1170,"start":1110,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1219,"start":1213,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1579,"start":1535,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":258,"start":199,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":890,"start":791,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":807,"start":799,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1170,"start":1110,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32},{"feature_index":1,"overlap_bases":30}],"query_bed":[1295,1327],"query_length":32,"union_overlap_bases":32},"family":"nested","fingerprint":"5627af445a1569a4c8688c0afe611fe3984ea4e89be0ec934085f5a035a6f31f","group_id":"5627af445a1569a4c8688c0afe611fe3984ea4e89be0ec934085f5a035a6f31f","id":"INTERVALS-0014471","index":14471,"input":{"contigs":{"synthetic_A":1781,"synthetic_B":1168},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1332,"start":1290,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1326,"start":1296,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":669,"start":558,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":533,"start":470,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1240,"start":1202,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":680,"start":617,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":233,"start":114,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":697,"start":654,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":159,"start":128,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":826,"start":741,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1327,"start":1295,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73}],"query_bed":[446,519],"query_length":73,"union_overlap_bases":73},"family":"coordinate_conversion","fingerprint":"b3eb8722fbb8f5b58b10731d81e65618f21e5396c11a21b0aab3317c5bc30faa","group_id":"b3eb8722fbb8f5b58b10731d81e65618f21e5396c11a21b0aab3317c5bc30faa","id":"INTERVALS-0014499","index":14499,"input":{"contigs":{"synthetic_A":1481,"synthetic_B":1263},"features":[{"basis":"one_closed","contig":"synthetic_B","end":519,"start":447,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":329,"start":322,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1200,"start":1136,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":293,"start":272,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":269,"start":208,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":232,"start":231,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1258,"start":1159,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":558,"start":520,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":905,"start":816,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":723,"start":694,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1019,"start":985,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":519,"start":447,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46},{"feature_index":1,"overlap_bases":44}],"query_bed":[679,725],"query_length":46,"union_overlap_bases":46},"family":"nested","fingerprint":"3d286e164c29c66bebaa7e4faf0cdaa5819b37f517cbbfc0427477af6be05841","group_id":"3d286e164c29c66bebaa7e4faf0cdaa5819b37f517cbbfc0427477af6be05841","id":"INTERVALS-0014501","index":14501,"input":{"contigs":{"synthetic_A":972,"synthetic_B":1028},"features":[{"basis":"one_closed","contig":"synthetic_B","end":730,"start":675,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":724,"start":680,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":92,"start":61,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":411,"start":329,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":717,"start":636,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":634,"start":524,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":752,"start":681,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":248,"start":173,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":555,"start":490,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":205,"start":173,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":725,"start":679,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":69},{"feature_index":1,"overlap_bases":26}],"query_bed":[484,553],"query_length":69,"union_overlap_bases":69},"family":"coordinate_conversion","fingerprint":"fdef3eb823e64115f1da52b78c7f658c9a6ddf00c6232206a8dafc9db53c3d17","group_id":"fdef3eb823e64115f1da52b78c7f658c9a6ddf00c6232206a8dafc9db53c3d17","id":"INTERVALS-0014514","index":14514,"input":{"contigs":{"synthetic_A":1425,"synthetic_B":1212},"features":[{"basis":"one_closed","contig":"synthetic_B","end":553,"start":485,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":573,"start":528,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":845,"start":785,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":582,"start":563,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1164,"start":1061,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":553,"start":485,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":78},{"feature_index":1,"overlap_bases":76},{"feature_index":2,"overlap_bases":35}],"query_bed":[491,569],"query_length":78,"union_overlap_bases":78},"family":"nested","fingerprint":"b4b21f7cf8a55835f47343cbb6b6b19a63a0e94ed5daa99be9118ef095494622","group_id":"b4b21f7cf8a55835f47343cbb6b6b19a63a0e94ed5daa99be9118ef095494622","id":"INTERVALS-0014526","index":14526,"input":{"contigs":{"synthetic_A":1177,"synthetic_B":1450},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":574,"start":486,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":568,"start":492,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":526,"start":429,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":829,"start":748,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":412,"start":373,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":521,"start":469,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":569,"start":492,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":60},{"feature_index":2,"overlap_bases":2},{"feature_index":4,"overlap_bases":31}],"query_bed":[412,473],"query_length":61,"union_overlap_bases":61},"family":"overlapping_blocks","fingerprint":"54464302bf41f775e45dc884def439a8c9007d4578c1a683da8e6f95efdc6935","group_id":"54464302bf41f775e45dc884def439a8c9007d4578c1a683da8e6f95efdc6935","id":"INTERVALS-0014527","index":14527,"input":{"contigs":{"synthetic_A":1462,"synthetic_B":747},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":415,"start":409,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":473,"start":414,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":476,"start":472,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":325,"start":261,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":525,"start":442,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1055,"start":1003,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":540,"start":525,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":76,"start":53,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":620,"start":592,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":667,"start":613,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":473,"start":412,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":42},{"feature_index":4,"overlap_bases":13}],"query_bed":[535,577],"query_length":42,"union_overlap_bases":42},"family":"stranded","fingerprint":"437228ac16c0ccc0747fc3bac6c95ee2d9a442f51ecc9d257122bdacdeff5ce9","group_id":"437228ac16c0ccc0747fc3bac6c95ee2d9a442f51ecc9d257122bdacdeff5ce9","id":"INTERVALS-0014528","index":14528,"input":{"contigs":{"synthetic_A":1741,"synthetic_B":1210},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":577,"start":535,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":577,"start":535,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":399,"start":299,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":329,"start":219,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":646,"start":565,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1115,"start":1003,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":950,"start":850,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":122,"start":88,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":598,"start":503,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":577,"start":535,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":13}],"query_bed":[35,48],"query_length":13,"union_overlap_bases":13},"family":"coordinate_conversion","fingerprint":"9df2a086e8cccc5813eaa945dcd0ed4f62b2aaf77f3ed6b70b9642a3d9e9d8bd","group_id":"9df2a086e8cccc5813eaa945dcd0ed4f62b2aaf77f3ed6b70b9642a3d9e9d8bd","id":"INTERVALS-0014534","index":14534,"input":{"contigs":{"synthetic_A":632,"synthetic_B":1622},"features":[{"basis":"one_closed","contig":"synthetic_A","end":48,"start":36,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":165,"start":133,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":277,"start":192,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":357,"start":353,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1317,"start":1268,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":48,"start":36,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":75},{"feature_index":1,"overlap_bases":73},{"feature_index":4,"overlap_bases":44}],"query_bed":[187,262],"query_length":75,"union_overlap_bases":75},"family":"nested","fingerprint":"5bc6f194c61f55b4f9e51b460c8f09fb5c2e26abd8858c398a435eb17673656f","group_id":"5bc6f194c61f55b4f9e51b460c8f09fb5c2e26abd8858c398a435eb17673656f","id":"INTERVALS-0014541","index":14541,"input":{"contigs":{"synthetic_A":701,"synthetic_B":1527},"features":[{"basis":"one_closed","contig":"synthetic_A","end":267,"start":183,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":261,"start":188,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":200,"start":183,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1080,"start":1068,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":231,"start":159,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":953,"start":867,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":345,"start":286,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":262,"start":188,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32},{"feature_index":1,"overlap_bases":30}],"query_bed":[291,323],"query_length":32,"union_overlap_bases":32},"family":"nested","fingerprint":"f0257fa4da6aa3036e674f1606fdaa0c2da5ae5bd0c6001d2ef03dcdebde8604","group_id":"f0257fa4da6aa3036e674f1606fdaa0c2da5ae5bd0c6001d2ef03dcdebde8604","id":"INTERVALS-0014546","index":14546,"input":{"contigs":{"synthetic_A":1028,"synthetic_B":736},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":328,"start":286,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":322,"start":292,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":549,"start":469,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":397,"start":390,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":538,"start":489,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":382,"start":372,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":155,"start":94,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":716,"start":708,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":323,"start":291,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":43},{"feature_index":1,"overlap_bases":41}],"query_bed":[394,437],"query_length":43,"union_overlap_bases":43},"family":"nested","fingerprint":"bbc34c96f8094f6559e1a5e5c5329958ce43cbbac3652ff2b037fad911845b39","group_id":"bbc34c96f8094f6559e1a5e5c5329958ce43cbbac3652ff2b037fad911845b39","id":"INTERVALS-0014556","index":14556,"input":{"contigs":{"synthetic_A":1016,"synthetic_B":1342},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":442,"start":389,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":436,"start":396,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":581,"start":504,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":345,"start":255,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":252,"start":204,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":609,"start":533,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":437,"start":395,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":32},{"feature_index":2,"overlap_bases":2}],"query_bed":[1109,1142],"query_length":33,"union_overlap_bases":33},"family":"overlapping_blocks","fingerprint":"dd5089b442fe191d8815fe7c944a608a84273d0fc609795109a4fb1dd0a79282","group_id":"dd5089b442fe191d8815fe7c944a608a84273d0fc609795109a4fb1dd0a79282","id":"INTERVALS-0014557","index":14557,"input":{"contigs":{"synthetic_A":1607,"synthetic_B":601},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1112,"start":1106,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1142,"start":1110,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1145,"start":1140,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":358,"start":300,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":219,"start":102,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1032,"start":970,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":90,"start":57,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1142,"start":1110,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":64}],"query_bed":[188,252],"query_length":64,"union_overlap_bases":64},"family":"stranded","fingerprint":"8ec4af78df64da127863007be38df22149aaadcef4395109e42c6e86664217b1","group_id":"8ec4af78df64da127863007be38df22149aaadcef4395109e42c6e86664217b1","id":"INTERVALS-0014563","index":14563,"input":{"contigs":{"synthetic_A":795,"synthetic_B":1642},"features":[{"basis":"one_closed","contig":"synthetic_A","end":252,"start":189,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":252,"start":188,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":224,"start":169,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":684,"start":608,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":93,"start":1,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":844,"start":824,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":878,"start":779,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":526,"start":474,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":252,"start":189,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":53},{"feature_index":1,"overlap_bases":51}],"query_bed":[75,128],"query_length":53,"union_overlap_bases":53},"family":"nested","fingerprint":"61f4792ee17ef1217ab9fdd9fad00e81080c6855a86dd784d4b488ee671e83cd","group_id":"61f4792ee17ef1217ab9fdd9fad00e81080c6855a86dd784d4b488ee671e83cd","id":"INTERVALS-0014566","index":14566,"input":{"contigs":{"synthetic_A":1019,"synthetic_B":1135},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":133,"start":70,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":127,"start":76,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":983,"start":865,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1070,"start":979,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":602,"start":525,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":72,"start":50,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":722,"start":636,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":913,"start":863,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":301,"start":192,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":801,"start":777,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":128,"start":75,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":22}],"query_bed":[109,131],"query_length":22,"union_overlap_bases":22},"family":"stranded","fingerprint":"962a998a27934bfc563a01d59b076104a127da21f978ea09742661ec8b19d9d5","group_id":"962a998a27934bfc563a01d59b076104a127da21f978ea09742661ec8b19d9d5","id":"INTERVALS-0014573","index":14573,"input":{"contigs":{"synthetic_A":768,"synthetic_B":1056},"features":[{"basis":"one_closed","contig":"synthetic_B","end":131,"start":110,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":131,"start":109,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":527,"start":525,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":843,"start":766,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":332,"start":327,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":131,"start":109,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":25},{"feature_index":1,"overlap_bases":23},{"feature_index":3,"overlap_bases":24}],"query_bed":[159,184],"query_length":25,"union_overlap_bases":25},"family":"nested","fingerprint":"47f516dc6a031bb76d49528d564543a0a101d6d50db2ebfb60badb36ef014e76","group_id":"47f516dc6a031bb76d49528d564543a0a101d6d50db2ebfb60badb36ef014e76","id":"INTERVALS-0014576","index":14576,"input":{"contigs":{"synthetic_A":1715,"synthetic_B":1229},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":189,"start":154,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":183,"start":160,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":287,"start":196,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":183,"start":140,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":147,"start":74,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1100,"start":1050,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":650,"start":539,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":184,"start":159,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[713,748],"query_length":35,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e69b95e0be71a7f9231d11a925af72d6473888d1a6f1903d7230abedd3bf601d","group_id":"e69b95e0be71a7f9231d11a925af72d6473888d1a6f1903d7230abedd3bf601d","id":"INTERVALS-0014595","index":14595,"input":{"contigs":{"synthetic_A":1537,"synthetic_B":980},"features":[{"basis":"one_closed","contig":"synthetic_A","end":713,"start":695,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":782,"start":749,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":342,"start":250,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":33,"start":27,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":603,"start":514,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":78,"start":70,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":748,"start":714,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":36}],"query_bed":[137,173],"query_length":36,"union_overlap_bases":36},"family":"coordinate_conversion","fingerprint":"2a11f6d0fbdc02171afa4a60b5346d59502ac2c047907e0b672c677e2627c299","group_id":"2a11f6d0fbdc02171afa4a60b5346d59502ac2c047907e0b672c677e2627c299","id":"INTERVALS-0014599","index":14599,"input":{"contigs":{"synthetic_A":1648,"synthetic_B":879},"features":[{"basis":"one_closed","contig":"synthetic_B","end":173,"start":138,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":747,"start":728,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1205,"start":1172,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1192,"start":1106,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":589,"start":488,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":842,"start":834,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":324,"start":259,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":173,"start":138,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":75}],"query_bed":[684,759],"query_length":75,"union_overlap_bases":75},"family":"coordinate_conversion","fingerprint":"52e6c48215a66e1e737d27396a61546b491ec2230a021d96e3d12886085032c2","group_id":"52e6c48215a66e1e737d27396a61546b491ec2230a021d96e3d12886085032c2","id":"INTERVALS-0014619","index":14619,"input":{"contigs":{"synthetic_A":1333,"synthetic_B":1188},"features":[{"basis":"one_closed","contig":"synthetic_B","end":759,"start":685,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":415,"start":348,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":245,"start":157,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1100,"start":1001,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1112,"start":1039,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":235,"start":198,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":759,"start":685,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":66},{"feature_index":2,"overlap_bases":2}],"query_bed":[1013,1080],"query_length":67,"union_overlap_bases":67},"family":"overlapping_blocks","fingerprint":"cfe5d5ae5c9052568b0417149b45fee6321dc5f3e95d6fb21208de236bcd120c","group_id":"cfe5d5ae5c9052568b0417149b45fee6321dc5f3e95d6fb21208de236bcd120c","id":"INTERVALS-0014622","index":14622,"input":{"contigs":{"synthetic_A":1512,"synthetic_B":1442},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1016,"start":1011,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1080,"start":1015,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1083,"start":1079,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1386,"start":1279,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":292,"start":198,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1428,"start":1330,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":555,"start":446,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":118,"start":27,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":610,"start":546,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":97,"start":9,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":657,"start":552,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1080,"start":1013,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[236,275],"query_length":39,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"c5bfadfc29d46107309f54d4d105d15a5ad64f7313697de5a346c1f3499efe09","group_id":"c5bfadfc29d46107309f54d4d105d15a5ad64f7313697de5a346c1f3499efe09","id":"INTERVALS-0014645","index":14645,"input":{"contigs":{"synthetic_A":1020,"synthetic_B":741},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":236,"start":218,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":309,"start":275,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":598,"start":495,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":520,"start":411,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":130,"start":98,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":255,"start":219,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":689,"start":595,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":537,"start":494,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":408,"start":342,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":518,"start":481,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":324,"start":267,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":968,"start":879,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":275,"start":236,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":65}],"query_bed":[1053,1118],"query_length":65,"union_overlap_bases":65},"family":"coordinate_conversion","fingerprint":"bf86e798bda03b4bac4e8dc41d6b0f54ab159921040c72446d2914743d0d38d3","group_id":"bf86e798bda03b4bac4e8dc41d6b0f54ab159921040c72446d2914743d0d38d3","id":"INTERVALS-0014649","index":14649,"input":{"contigs":{"synthetic_A":854,"synthetic_B":1479},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1118,"start":1054,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":336,"start":264,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":206,"start":126,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":696,"start":597,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":179,"start":104,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":90,"start":65,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1118,"start":1054,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1276,1349],"query_length":73,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"8e9b33786fb54ea68e001a5d7897b94a341e596db671507d941bda6f5133e239","group_id":"8e9b33786fb54ea68e001a5d7897b94a341e596db671507d941bda6f5133e239","id":"INTERVALS-0014655","index":14655,"input":{"contigs":{"synthetic_A":1567,"synthetic_B":681},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1276,"start":1267,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1376,"start":1350,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":340,"start":260,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":559,"start":532,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":466,"start":420,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1349,"start":1277,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":11},{"feature_index":1,"overlap_bases":9}],"query_bed":[283,294],"query_length":11,"union_overlap_bases":11},"family":"nested","fingerprint":"42ff36c6d9b1da722a11efffcf2ccd58930c308941ae5b001be0bea18eea4c71","group_id":"42ff36c6d9b1da722a11efffcf2ccd58930c308941ae5b001be0bea18eea4c71","id":"INTERVALS-0014666","index":14666,"input":{"contigs":{"synthetic_A":1800,"synthetic_B":1032},"features":[{"basis":"one_closed","contig":"synthetic_B","end":299,"start":279,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":293,"start":284,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":701,"start":697,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":926,"start":907,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":476,"start":357,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":180,"start":163,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1053,"start":971,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":649,"start":607,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":294,"start":284,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":28},{"feature_index":2,"overlap_bases":2}],"query_bed":[640,669],"query_length":29,"union_overlap_bases":29},"family":"overlapping_blocks","fingerprint":"819e6d705c094bb0767eaf938faad569103c696f7972930535fdf3e23e677144","group_id":"819e6d705c094bb0767eaf938faad569103c696f7972930535fdf3e23e677144","id":"INTERVALS-0014667","index":14667,"input":{"contigs":{"synthetic_A":1212,"synthetic_B":1141},"features":[{"basis":"one_closed","contig":"synthetic_A","end":643,"start":638,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":669,"start":642,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":672,"start":668,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":202,"start":84,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":604,"start":526,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":249,"start":238,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":769,"start":686,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":709,"start":635,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":669,"start":641,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":45},{"feature_index":1,"overlap_bases":43}],"query_bed":[484,529],"query_length":45,"union_overlap_bases":45},"family":"nested","fingerprint":"3a1ce21afffe915d6bd6c6b6de9d0cea52b69bbe6a884f86db5e84cbbacc10ad","group_id":"3a1ce21afffe915d6bd6c6b6de9d0cea52b69bbe6a884f86db5e84cbbacc10ad","id":"INTERVALS-0014676","index":14676,"input":{"contigs":{"synthetic_A":810,"synthetic_B":1680},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":534,"start":479,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":528,"start":486,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1314,"start":1228,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":589,"start":564,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":742,"start":636,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":252,"start":185,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":698,"start":670,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":675,"start":649,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":596,"start":496,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1068,"start":1061,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":529,"start":485,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":55},{"feature_index":2,"overlap_bases":2},{"feature_index":4,"overlap_bases":35}],"query_bed":[852,908],"query_length":56,"union_overlap_bases":56},"family":"overlapping_blocks","fingerprint":"68544254503b6d30cb9002ff0d022c98723c5eb7b93c75f4af612d6f495682dc","group_id":"68544254503b6d30cb9002ff0d022c98723c5eb7b93c75f4af612d6f495682dc","id":"INTERVALS-0014682","index":14682,"input":{"contigs":{"synthetic_A":1468,"synthetic_B":1020},"features":[{"basis":"one_closed","contig":"synthetic_A","end":855,"start":850,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":908,"start":854,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":911,"start":906,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":837,"start":776,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":967,"start":873,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":885,"start":821,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":908,"start":852,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":43}],"query_bed":[650,693],"query_length":43,"union_overlap_bases":43},"family":"stranded","fingerprint":"f9f2e2f6fa146ddb6460686075755be37334b45c50d03dacf90a5f58af286fee","group_id":"f9f2e2f6fa146ddb6460686075755be37334b45c50d03dacf90a5f58af286fee","id":"INTERVALS-0014693","index":14693,"input":{"contigs":{"synthetic_A":1263,"synthetic_B":1515},"features":[{"basis":"one_closed","contig":"synthetic_B","end":693,"start":651,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":693,"start":650,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":991,"start":965,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":994,"start":935,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1062,"start":983,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":319,"start":317,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":644,"start":628,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":595,"start":550,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":928,"start":859,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":693,"start":650,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":78}],"query_bed":[29,107],"query_length":78,"union_overlap_bases":78},"family":"coordinate_conversion","fingerprint":"1438442c8549f1bcb54e26294d131071710ad3d5c46abb915e36146b651f43d0","group_id":"1438442c8549f1bcb54e26294d131071710ad3d5c46abb915e36146b651f43d0","id":"INTERVALS-0014709","index":14709,"input":{"contigs":{"synthetic_A":1182,"synthetic_B":1710},"features":[{"basis":"one_closed","contig":"synthetic_A","end":107,"start":30,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1055,"start":1002,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":437,"start":416,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":392,"start":277,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":254,"start":163,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":870,"start":796,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":107,"start":30,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":64},{"feature_index":1,"overlap_bases":62},{"feature_index":4,"overlap_bases":1},{"feature_index":6,"overlap_bases":15}],"query_bed":[704,768],"query_length":64,"union_overlap_bases":64},"family":"nested","fingerprint":"9971dba855aefa57f19ff32358fe47ec6a5bb9efea7e5fafb271397923580ba5","group_id":"9971dba855aefa57f19ff32358fe47ec6a5bb9efea7e5fafb271397923580ba5","id":"INTERVALS-0014726","index":14726,"input":{"contigs":{"synthetic_A":1325,"synthetic_B":915},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":773,"start":699,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":767,"start":705,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":168,"start":55,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":701,"start":603,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":731,"start":730,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":833,"start":743,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":719,"start":690,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":182,"start":150,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":418,"start":383,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":632,"start":569,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":769,"start":696,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":768,"start":704,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[169,204],"query_length":35,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"91418eec42ec40676cbbac4a3e4671de59db58e9300cfc6df9acfc0b18c18d69","group_id":"91418eec42ec40676cbbac4a3e4671de59db58e9300cfc6df9acfc0b18c18d69","id":"INTERVALS-0014740","index":14740,"input":{"contigs":{"synthetic_A":1158,"synthetic_B":1056},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":169,"start":157,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":205,"start":204,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":974,"start":892,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":472,"start":388,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":764,"start":740,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":530,"start":487,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":204,"start":170,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1067,1140],"query_length":73,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"a54a000eec143b8719b13ead4ecfde03883cdcb5126a833be77a595e98c02253","group_id":"a54a000eec143b8719b13ead4ecfde03883cdcb5126a833be77a595e98c02253","id":"INTERVALS-0014755","index":14755,"input":{"contigs":{"synthetic_A":1797,"synthetic_B":979},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1067,"start":1056,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1162,"start":1140,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":372,"start":348,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":365,"start":280,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":770,"start":709,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1140,"start":1067,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":16},{"feature_index":2,"overlap_bases":2}],"query_bed":[961,978],"query_length":17,"union_overlap_bases":17},"family":"overlapping_blocks","fingerprint":"3650da4c6cf24abe59abed865f6ebcbc5f60ddb68b42e20ccb72939118115bbb","group_id":"3650da4c6cf24abe59abed865f6ebcbc5f60ddb68b42e20ccb72939118115bbb","id":"INTERVALS-0014767","index":14767,"input":{"contigs":{"synthetic_A":1244,"synthetic_B":852},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":964,"start":958,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":978,"start":962,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":981,"start":977,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":629,"start":558,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":903,"start":860,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":146,"start":67,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":605,"start":594,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":736,"start":670,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":706,"start":682,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":116,"start":113,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":733,"start":704,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":978,"start":962,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":62}],"query_bed":[125,187],"query_length":62,"union_overlap_bases":62},"family":"stranded","fingerprint":"6b40d6304a66c94e594bbf58a898958464dc346f25a74d1d50b821faf5375c1a","group_id":"6b40d6304a66c94e594bbf58a898958464dc346f25a74d1d50b821faf5375c1a","id":"INTERVALS-0014778","index":14778,"input":{"contigs":{"synthetic_A":982,"synthetic_B":1395},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":187,"start":125,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":187,"start":125,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":568,"start":508,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":691,"start":612,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":287,"start":280,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":761,"start":642,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":738,"start":699,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":247,"start":172,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":930,"start":824,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":418,"start":349,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":498,"start":448,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":610,"start":535,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":187,"start":126,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":45},{"feature_index":2,"overlap_bases":2}],"query_bed":[211,257],"query_length":46,"union_overlap_bases":46},"family":"overlapping_blocks","fingerprint":"1bb26426fdacbfe764a883c34570a3c4f8e7d8bf455d161f9fe4556a75372771","group_id":"1bb26426fdacbfe764a883c34570a3c4f8e7d8bf455d161f9fe4556a75372771","id":"INTERVALS-0014797","index":14797,"input":{"contigs":{"synthetic_A":1350,"synthetic_B":649},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":214,"start":208,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":257,"start":212,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":260,"start":256,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":367,"start":274,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":936,"start":859,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":460,"start":352,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":145,"start":78,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":257,"start":211,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[300,311],"query_length":11,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"aa1432585080dd9bf1c6a3ba3bab72994c0c831adda2e31c3db9c7a0471801bf","group_id":"aa1432585080dd9bf1c6a3ba3bab72994c0c831adda2e31c3db9c7a0471801bf","id":"INTERVALS-0014800","index":14800,"input":{"contigs":{"synthetic_A":1055,"synthetic_B":601},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":300,"start":282,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":340,"start":312,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":389,"start":343,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":108,"start":15,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":176,"start":158,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":207,"start":182,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":929,"start":846,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":407,"start":313,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":170,"start":150,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":311,"start":300,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":68},{"feature_index":2,"overlap_bases":2}],"query_bed":[418,487],"query_length":69,"union_overlap_bases":69},"family":"overlapping_blocks","fingerprint":"d6ca6a8824b27d3675704999e63f177717bd09545acc5815a1685f686cbcde12","group_id":"d6ca6a8824b27d3675704999e63f177717bd09545acc5815a1685f686cbcde12","id":"INTERVALS-0014802","index":14802,"input":{"contigs":{"synthetic_A":1531,"synthetic_B":1443},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":421,"start":415,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":487,"start":420,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":490,"start":485,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":294,"start":207,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1318,"start":1317,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":696,"start":667,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":487,"start":418,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":8,"overlap_bases":58}],"query_bed":[275,333],"query_length":58,"union_overlap_bases":58},"family":"touching_boundary","fingerprint":"2baa440c9ef0ab3972a5a80fe72b6524b484356177d38d27701528aa79fdd7fb","group_id":"2baa440c9ef0ab3972a5a80fe72b6524b484356177d38d27701528aa79fdd7fb","id":"INTERVALS-0014805","index":14805,"input":{"contigs":{"synthetic_A":1055,"synthetic_B":620},"features":[{"basis":"one_closed","contig":"synthetic_A","end":275,"start":275,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":373,"start":333,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":371,"start":350,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":637,"start":616,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":444,"start":350,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":851,"start":818,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":166,"start":135,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":408,"start":379,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":347,"start":259,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":831,"start":758,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":603,"start":602,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":333,"start":275,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":17},{"feature_index":1,"overlap_bases":15}],"query_bed":[855,872],"query_length":17,"union_overlap_bases":17},"family":"nested","fingerprint":"eb9cb966ef0030fc03e7256c01e1185abe0f3533263390e784052f494f6d71e0","group_id":"eb9cb966ef0030fc03e7256c01e1185abe0f3533263390e784052f494f6d71e0","id":"INTERVALS-0014806","index":14806,"input":{"contigs":{"synthetic_A":931,"synthetic_B":1140},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":877,"start":850,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":871,"start":856,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":239,"start":156,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":117,"start":50,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":822,"start":764,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":126,"start":31,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":872,"start":856,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":69}],"query_bed":[198,267],"query_length":69,"union_overlap_bases":69},"family":"stranded","fingerprint":"ef1fda00dc58038ecf354de01357c7f8d66715c9df72478cd99596a584bf4d49","group_id":"ef1fda00dc58038ecf354de01357c7f8d66715c9df72478cd99596a584bf4d49","id":"INTERVALS-0014818","index":14818,"input":{"contigs":{"synthetic_A":1241,"synthetic_B":1211},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":267,"start":198,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":267,"start":198,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":292,"start":200,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":926,"start":889,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":934,"start":895,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":944,"start":892,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":935,"start":822,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":267,"start":199,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":60}],"query_bed":[78,138],"query_length":60,"union_overlap_bases":60},"family":"coordinate_conversion","fingerprint":"68ab017a85fd896c98e6f4528c89888b85b9a5f2c9064c503f698dff1477e110","group_id":"68ab017a85fd896c98e6f4528c89888b85b9a5f2c9064c503f698dff1477e110","id":"INTERVALS-0014824","index":14824,"input":{"contigs":{"synthetic_A":1235,"synthetic_B":631},"features":[{"basis":"one_closed","contig":"synthetic_A","end":138,"start":79,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":550,"start":474,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":478,"start":376,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":661,"start":632,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":280,"start":236,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":138,"start":79,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":55},{"feature_index":1,"overlap_bases":53},{"feature_index":4,"overlap_bases":20}],"query_bed":[640,695],"query_length":55,"union_overlap_bases":55},"family":"nested","fingerprint":"93edd632cee66576a22336156d5da8b2d9cc4e44771d5903af2bae4fa8422df2","group_id":"93edd632cee66576a22336156d5da8b2d9cc4e44771d5903af2bae4fa8422df2","id":"INTERVALS-0014826","index":14826,"input":{"contigs":{"synthetic_A":856,"synthetic_B":992},"features":[{"basis":"one_closed","contig":"synthetic_A","end":700,"start":636,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":694,"start":642,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":632,"start":583,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":718,"start":700,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":660,"start":609,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":221,"start":173,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":693,"start":658,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":695,"start":640,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":77},{"feature_index":2,"overlap_bases":2}],"query_bed":[405,483],"query_length":78,"union_overlap_bases":78},"family":"overlapping_blocks","fingerprint":"5d22e9c692d4675567ebd4a859b3004f738f5d107be519416f69b02bbae22815","group_id":"5d22e9c692d4675567ebd4a859b3004f738f5d107be519416f69b02bbae22815","id":"INTERVALS-0014827","index":14827,"input":{"contigs":{"synthetic_A":833,"synthetic_B":1209},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":408,"start":402,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":483,"start":407,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":486,"start":482,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":419,"start":323,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":961,"start":874,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":698,"start":612,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":570,"start":452,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":236,"start":204,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":534,"start":475,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1048,"start":1038,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":436,"start":430,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":483,"start":405,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":10},{"feature_index":5,"overlap_bases":10}],"query_bed":[411,421],"query_length":10,"union_overlap_bases":10},"family":"coordinate_conversion","fingerprint":"46e8a6785fd9ad0d82f71959e8197d04af77f8fab86340d94763cc7d168afdcf","group_id":"46e8a6785fd9ad0d82f71959e8197d04af77f8fab86340d94763cc7d168afdcf","id":"INTERVALS-0014839","index":14839,"input":{"contigs":{"synthetic_A":1599,"synthetic_B":622},"features":[{"basis":"one_closed","contig":"synthetic_B","end":421,"start":412,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1241,"start":1196,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":328,"start":257,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":478,"start":473,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":63,"start":32,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":475,"start":406,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":500,"start":476,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":200,"start":195,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":981,"start":972,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":980,"start":867,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1370,"start":1259,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":421,"start":412,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[497,546],"query_length":49,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"4d2edfac30d6bdefd89afac23d6fd98f2a4f4cc522cab1755a8e26cf056710df","group_id":"4d2edfac30d6bdefd89afac23d6fd98f2a4f4cc522cab1755a8e26cf056710df","id":"INTERVALS-0014850","index":14850,"input":{"contigs":{"synthetic_A":1078,"synthetic_B":1344},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":497,"start":496,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":583,"start":546,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":902,"start":897,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":395,"start":326,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":279,"start":183,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":491,"start":375,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":249,"start":161,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":838,"start":798,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":877,"start":770,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":776,"start":735,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":152,"start":131,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":546,"start":497,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":34},{"feature_index":2,"overlap_bases":2},{"feature_index":4,"overlap_bases":7}],"query_bed":[1000,1035],"query_length":35,"union_overlap_bases":35},"family":"overlapping_blocks","fingerprint":"2a4ab3946af3ca26ffd9a499dd6da5e6932388b78498d5b796eb6ec55fea50af","group_id":"2a4ab3946af3ca26ffd9a499dd6da5e6932388b78498d5b796eb6ec55fea50af","id":"INTERVALS-0014862","index":14862,"input":{"contigs":{"synthetic_A":1229,"synthetic_B":1054},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1003,"start":997,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1035,"start":1002,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1038,"start":1033,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":565,"start":529,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1076,"start":1028,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":626,"start":544,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1035,"start":1001,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":72},{"feature_index":1,"overlap_bases":70}],"query_bed":[688,760],"query_length":72,"union_overlap_bases":72},"family":"nested","fingerprint":"05f83e1274e7e4a39d3b7620b136fe23426f6d41d4795858dd8389abf16b5558","group_id":"05f83e1274e7e4a39d3b7620b136fe23426f6d41d4795858dd8389abf16b5558","id":"INTERVALS-0014886","index":14886,"input":{"contigs":{"synthetic_A":1059,"synthetic_B":1202},"features":[{"basis":"one_closed","contig":"synthetic_A","end":765,"start":684,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":759,"start":689,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":918,"start":825,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":158,"start":43,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":176,"start":117,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":760,"start":689,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[251,309],"query_length":58,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"6f16de26c655a45c5e48fcd5b18e2b65de64e34c5946371514d6c2d57f7a7600","group_id":"6f16de26c655a45c5e48fcd5b18e2b65de64e34c5946371514d6c2d57f7a7600","id":"INTERVALS-0014905","index":14905,"input":{"contigs":{"synthetic_A":890,"synthetic_B":1659},"features":[{"basis":"one_closed","contig":"synthetic_B","end":251,"start":235,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":310,"start":309,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":797,"start":766,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":395,"start":341,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":476,"start":457,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":564,"start":547,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":646,"start":607,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":536,"start":533,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":388,"start":303,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":179,"start":172,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":309,"start":252,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":38}],"query_bed":[1407,1445],"query_length":38,"union_overlap_bases":38},"family":"coordinate_conversion","fingerprint":"864368308e8479609e19697c47b1b7da8d09a74a62b923a41503f2d1af7fa304","group_id":"864368308e8479609e19697c47b1b7da8d09a74a62b923a41503f2d1af7fa304","id":"INTERVALS-0014919","index":14919,"input":{"contigs":{"synthetic_A":1137,"synthetic_B":1660},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1445,"start":1408,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1083,"start":972,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":60,"start":53,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":65,"start":57,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":731,"start":654,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":818,"start":770,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":179,"start":126,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1445,"start":1408,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":77},{"feature_index":1,"overlap_bases":75}],"query_bed":[729,806],"query_length":77,"union_overlap_bases":77},"family":"nested","fingerprint":"678f2ab444e0f4003ccf429804863b3a4c4de1b3783b2a52c7f5b233f6b1fdb5","group_id":"678f2ab444e0f4003ccf429804863b3a4c4de1b3783b2a52c7f5b233f6b1fdb5","id":"INTERVALS-0014931","index":14931,"input":{"contigs":{"synthetic_A":1356,"synthetic_B":667},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":811,"start":724,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":805,"start":730,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":140,"start":99,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":631,"start":522,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":644,"start":540,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":806,"start":730,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":12},{"feature_index":2,"overlap_bases":2}],"query_bed":[725,738],"query_length":13,"union_overlap_bases":13},"family":"overlapping_blocks","fingerprint":"497363f64b4bc05f9cff0b8bb983dc05b393c09b11c6b7c0d774d5a88f6b330a","group_id":"497363f64b4bc05f9cff0b8bb983dc05b393c09b11c6b7c0d774d5a88f6b330a","id":"INTERVALS-0014932","index":14932,"input":{"contigs":{"synthetic_A":1507,"synthetic_B":1561},"features":[{"basis":"one_closed","contig":"synthetic_A","end":728,"start":723,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":738,"start":726,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":741,"start":737,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":454,"start":447,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":888,"start":833,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1374,"start":1303,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":59,"start":24,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1031,"start":1001,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":849,"start":811,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":953,"start":921,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":262,"start":204,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1178,"start":1075,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":738,"start":726,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":14}],"query_bed":[235,249],"query_length":14,"union_overlap_bases":14},"family":"stranded","fingerprint":"4f808486a402a799f4dcd301b22c2534bade7bef4e3921bcb39c2ca63198e3d5","group_id":"4f808486a402a799f4dcd301b22c2534bade7bef4e3921bcb39c2ca63198e3d5","id":"INTERVALS-0014933","index":14933,"input":{"contigs":{"synthetic_A":806,"synthetic_B":737},"features":[{"basis":"one_closed","contig":"synthetic_A","end":249,"start":236,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":249,"start":235,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":471,"start":457,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":175,"start":130,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":415,"start":318,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":48,"start":45,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":226,"start":197,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":299,"start":289,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":722,"start":629,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":636,"start":598,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":227,"start":178,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":281,"start":215,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":249,"start":236,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":33}],"query_bed":[752,785],"query_length":33,"union_overlap_bases":33},"family":"coordinate_conversion","fingerprint":"69ad7a94707488e313055544fa5612acd85701b02a774a8fed1b02b3decb1a14","group_id":"69ad7a94707488e313055544fa5612acd85701b02a774a8fed1b02b3decb1a14","id":"INTERVALS-0014934","index":14934,"input":{"contigs":{"synthetic_A":1525,"synthetic_B":1078},"features":[{"basis":"one_closed","contig":"synthetic_B","end":785,"start":753,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1323,"start":1258,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1215,"start":1168,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":479,"start":416,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":699,"start":641,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":832,"start":736,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":177,"start":122,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":80,"start":38,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":935,"start":837,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":785,"start":753,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":74},{"feature_index":1,"overlap_bases":72}],"query_bed":[1190,1264],"query_length":74,"union_overlap_bases":74},"family":"nested","fingerprint":"76d58edc3f90648a726683f1c6985416d355bc6725c509edbe1101652f2b5c30","group_id":"76d58edc3f90648a726683f1c6985416d355bc6725c509edbe1101652f2b5c30","id":"INTERVALS-0014946","index":14946,"input":{"contigs":{"synthetic_A":1543,"synthetic_B":616},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1269,"start":1185,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1263,"start":1191,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1073,"start":1029,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":346,"start":290,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":113,"start":65,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":543,"start":437,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":461,"start":397,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":136,"start":116,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":252,"start":189,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":425,"start":369,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":469,"start":441,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":303,"start":289,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1264,"start":1190,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":35},{"feature_index":2,"overlap_bases":2}],"query_bed":[599,635],"query_length":36,"union_overlap_bases":36},"family":"overlapping_blocks","fingerprint":"4066ab884fa20cd4d1b9c58d86224a8f921192782532863a11b15a2885023b47","group_id":"4066ab884fa20cd4d1b9c58d86224a8f921192782532863a11b15a2885023b47","id":"INTERVALS-0014952","index":14952,"input":{"contigs":{"synthetic_A":1468,"synthetic_B":1632},"features":[{"basis":"one_closed","contig":"synthetic_A","end":602,"start":597,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":635,"start":600,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":638,"start":634,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":539,"start":507,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1243,"start":1211,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":211,"start":178,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":974,"start":913,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":691,"start":626,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":172,"start":66,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":926,"start":820,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":886,"start":800,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":635,"start":600,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":67}],"query_bed":[374,441],"query_length":67,"union_overlap_bases":67},"family":"stranded","fingerprint":"e771edca2031131cfdc673effcdeb0c9b6c4c8e4d8f2faf69793dedbadced096","group_id":"e771edca2031131cfdc673effcdeb0c9b6c4c8e4d8f2faf69793dedbadced096","id":"INTERVALS-0014953","index":14953,"input":{"contigs":{"synthetic_A":943,"synthetic_B":630},"features":[{"basis":"one_closed","contig":"synthetic_A","end":441,"start":375,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":441,"start":374,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":31,"start":18,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":641,"start":583,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":579,"start":493,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":781,"start":763,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":441,"start":374,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":63},{"feature_index":2,"overlap_bases":2}],"query_bed":[325,389],"query_length":64,"union_overlap_bases":64},"family":"overlapping_blocks","fingerprint":"e853a88c38b2ef63ca6cd55bede03fb820bf693aa56d790cdcfa7a4aa9c27f7e","group_id":"e853a88c38b2ef63ca6cd55bede03fb820bf693aa56d790cdcfa7a4aa9c27f7e","id":"INTERVALS-0014957","index":14957,"input":{"contigs":{"synthetic_A":1306,"synthetic_B":678},"features":[{"basis":"one_closed","contig":"synthetic_A","end":328,"start":323,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":389,"start":326,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":392,"start":387,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":279,"start":185,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":292,"start":201,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":551,"start":460,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":389,"start":325,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":5}],"query_bed":[164,169],"query_length":5,"union_overlap_bases":5},"family":"coordinate_conversion","fingerprint":"06f9599aff9b242edcc0ad1b973490002e7a2676cd70148a1e349a3b396134bc","group_id":"06f9599aff9b242edcc0ad1b973490002e7a2676cd70148a1e349a3b396134bc","id":"INTERVALS-0014974","index":14974,"input":{"contigs":{"synthetic_A":1688,"synthetic_B":1258},"features":[{"basis":"one_closed","contig":"synthetic_A","end":169,"start":165,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":705,"start":649,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":312,"start":302,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":806,"start":718,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":516,"start":460,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":298,"start":182,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":400,"start":306,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":188,"start":111,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":337,"start":274,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":918,"start":841,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":693,"start":649,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1519,"start":1435,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":169,"start":165,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":12}],"query_bed":[503,515],"query_length":12,"union_overlap_bases":12},"family":"stranded","fingerprint":"c415fa9c29f31e5c587cd3189e8c7a18840e47637d06888747386d5e940af866","group_id":"c415fa9c29f31e5c587cd3189e8c7a18840e47637d06888747386d5e940af866","id":"INTERVALS-0014983","index":14983,"input":{"contigs":{"synthetic_A":769,"synthetic_B":866},"features":[{"basis":"one_closed","contig":"synthetic_A","end":515,"start":504,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":515,"start":504,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":232,"start":125,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":624,"start":546,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":371,"start":314,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":383,"start":369,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":553,"start":518,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":515,"start":503,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":59},{"feature_index":1,"overlap_bases":57}],"query_bed":[1013,1072],"query_length":59,"union_overlap_bases":59},"family":"nested","fingerprint":"d9609e8ea63e569cb3b69144bf5317056c2b3a9d1c69d796e35d31747f9326dd","group_id":"d9609e8ea63e569cb3b69144bf5317056c2b3a9d1c69d796e35d31747f9326dd","id":"INTERVALS-0014991","index":14991,"input":{"contigs":{"synthetic_A":1562,"synthetic_B":1262},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1077,"start":1009,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1071,"start":1014,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":693,"start":598,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":490,"start":420,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":928,"start":873,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1365,"start":1305,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":664,"start":596,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":401,"start":316,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":909,"start":897,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1072,"start":1014,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[326,333],"query_length":7,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"1fa70b2237eb5b528677028a45bb24d481ddc2843624f30d3e7566b5704b933c","group_id":"1fa70b2237eb5b528677028a45bb24d481ddc2843624f30d3e7566b5704b933c","id":"INTERVALS-0015000","index":15000,"input":{"contigs":{"synthetic_A":971,"synthetic_B":1574},"features":[{"basis":"one_closed","contig":"synthetic_B","end":326,"start":322,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":344,"start":334,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1442,"start":1414,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":618,"start":561,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":902,"start":786,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":399,"start":320,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":458,"start":408,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1401,"start":1319,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":605,"start":545,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":333,"start":326,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":40}],"query_bed":[395,435],"query_length":40,"union_overlap_bases":40},"family":"stranded","fingerprint":"5302cd3005387f3c85061f1ed06a9939cefbb78325a3a5572f1dd17a71258b79","group_id":"5302cd3005387f3c85061f1ed06a9939cefbb78325a3a5572f1dd17a71258b79","id":"INTERVALS-0015003","index":15003,"input":{"contigs":{"synthetic_A":1608,"synthetic_B":648},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":435,"start":395,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":435,"start":396,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":891,"start":818,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1011,"start":1008,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":211,"start":136,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":126,"start":110,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":11,"start":1,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":435,"start":396,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":48}],"query_bed":[90,138],"query_length":48,"union_overlap_bases":48},"family":"coordinate_conversion","fingerprint":"007bac12064b05fcc3ae98f1481ff6241e0bab70c156f794458c2189d812ae3e","group_id":"007bac12064b05fcc3ae98f1481ff6241e0bab70c156f794458c2189d812ae3e","id":"INTERVALS-0015019","index":15019,"input":{"contigs":{"synthetic_A":945,"synthetic_B":758},"features":[{"basis":"one_closed","contig":"synthetic_B","end":138,"start":91,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":326,"start":226,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":685,"start":654,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":560,"start":521,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":56,"start":55,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":703,"start":684,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":496,"start":493,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":384,"start":345,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":138,"start":91,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":66},{"feature_index":1,"overlap_bases":64}],"query_bed":[607,673],"query_length":66,"union_overlap_bases":66},"family":"nested","fingerprint":"526e20ae64a8ccd47fa96ad83bda268245196ed9b3883c7153f97b895f55768c","group_id":"526e20ae64a8ccd47fa96ad83bda268245196ed9b3883c7153f97b895f55768c","id":"INTERVALS-0015026","index":15026,"input":{"contigs":{"synthetic_A":1526,"synthetic_B":1288},"features":[{"basis":"one_closed","contig":"synthetic_A","end":678,"start":603,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":672,"start":608,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":161,"start":110,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":147,"start":92,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":649,"start":576,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":766,"start":677,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":673,"start":607,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":44}],"query_bed":[77,121],"query_length":44,"union_overlap_bases":44},"family":"stranded","fingerprint":"15a6f4de125a5bb2ee30c60b0e2ba971fd25da8a1387b5464c496e02f8795819","group_id":"15a6f4de125a5bb2ee30c60b0e2ba971fd25da8a1387b5464c496e02f8795819","id":"INTERVALS-0015053","index":15053,"input":{"contigs":{"synthetic_A":1217,"synthetic_B":1732},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":121,"start":77,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":121,"start":78,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":348,"start":342,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":983,"start":902,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1313,"start":1208,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":747,"start":666,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":631,"start":577,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1007,"start":991,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":99,"start":43,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":642,"start":526,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":233,"start":115,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":270,"start":221,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":121,"start":78,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":65},{"feature_index":1,"overlap_bases":4},{"feature_index":2,"overlap_bases":30},{"feature_index":6,"overlap_bases":14}],"query_bed":[1112,1177],"query_length":65,"union_overlap_bases":65},"family":"coordinate_conversion","fingerprint":"9a71b53214cd47fce8842750efd25c7e2932acd8e41d44cc43b142464780db0c","group_id":"9a71b53214cd47fce8842750efd25c7e2932acd8e41d44cc43b142464780db0c","id":"INTERVALS-0015054","index":15054,"input":{"contigs":{"synthetic_A":1399,"synthetic_B":1467},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1177,"start":1113,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1123,"start":1120,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1261,"start":1148,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1299,"start":1231,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":643,"start":538,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":767,"start":748,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1242,"start":1164,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":400,"start":400,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":893,"start":855,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":874,"start":762,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":869,"start":848,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1177,"start":1113,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":50},{"feature_index":5,"overlap_bases":10}],"query_bed":[200,250],"query_length":50,"union_overlap_bases":50},"family":"stranded","fingerprint":"0fe8342cdacd8755189ea2d020b7d1ee55a81c82c1596a3ca1e33087d73e3596","group_id":"0fe8342cdacd8755189ea2d020b7d1ee55a81c82c1596a3ca1e33087d73e3596","id":"INTERVALS-0015063","index":15063,"input":{"contigs":{"synthetic_A":724,"synthetic_B":1445},"features":[{"basis":"one_closed","contig":"synthetic_A","end":250,"start":201,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":250,"start":200,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1129,"start":1038,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":194,"start":87,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":326,"start":265,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":297,"start":240,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":250,"start":201,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":26}],"query_bed":[621,647],"query_length":26,"union_overlap_bases":26},"family":"stranded","fingerprint":"55475b4276ce55e1ff7420279851edf2f6575a192f8fec8378e5354825ee70aa","group_id":"55475b4276ce55e1ff7420279851edf2f6575a192f8fec8378e5354825ee70aa","id":"INTERVALS-0015073","index":15073,"input":{"contigs":{"synthetic_A":1296,"synthetic_B":1552},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":647,"start":621,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":647,"start":621,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1155,"start":1055,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1347,"start":1268,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":335,"start":219,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1126,"start":1080,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":476,"start":453,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":905,"start":846,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":54,"start":15,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":402,"start":301,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1315,"start":1290,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":469,"start":468,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":647,"start":621,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[434,495],"query_length":61,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"b87f9ef49953962898aed2c9ac036b1db65812c40625e5892c0c1824f2d0f309","group_id":"b87f9ef49953962898aed2c9ac036b1db65812c40625e5892c0c1824f2d0f309","id":"INTERVALS-0015085","index":15085,"input":{"contigs":{"synthetic_A":660,"synthetic_B":1782},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":434,"start":424,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":507,"start":496,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":420,"start":358,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":562,"start":532,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":385,"start":278,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1500,"start":1409,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":89,"start":58,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":314,"start":240,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":476,"start":358,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":495,"start":434,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":65},{"feature_index":2,"overlap_bases":2}],"query_bed":[581,647],"query_length":66,"union_overlap_bases":66},"family":"overlapping_blocks","fingerprint":"74156122354cd420e9c60e4fc41f52812b7a8fa466cac16925363e56be4a5b62","group_id":"74156122354cd420e9c60e4fc41f52812b7a8fa466cac16925363e56be4a5b62","id":"INTERVALS-0015092","index":15092,"input":{"contigs":{"synthetic_A":1407,"synthetic_B":861},"features":[{"basis":"one_closed","contig":"synthetic_B","end":584,"start":579,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":647,"start":582,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":650,"start":645,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":470,"start":358,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":564,"start":452,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":202,"start":111,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1130,"start":1126,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":338,"start":227,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":647,"start":581,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[259,317],"query_length":58,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"693bd164f8b05f45ab20742dddbd8de52b20f9b908055b431f5b7da537ccb938","group_id":"693bd164f8b05f45ab20742dddbd8de52b20f9b908055b431f5b7da537ccb938","id":"INTERVALS-0015110","index":15110,"input":{"contigs":{"synthetic_A":1116,"synthetic_B":1754},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":259,"start":255,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":353,"start":317,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1556,"start":1540,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":427,"start":384,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":985,"start":953,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":473,"start":455,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":394,"start":334,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":231,"start":150,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":728,"start":724,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":334,"start":278,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":317,"start":259,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[156,198],"query_length":42,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"68c81da0caab021395d53d6599c056ae50407e8173eac82a7ac63a751d11296c","group_id":"68c81da0caab021395d53d6599c056ae50407e8173eac82a7ac63a751d11296c","id":"INTERVALS-0015140","index":15140,"input":{"contigs":{"synthetic_A":881,"synthetic_B":696},"features":[{"basis":"one_closed","contig":"synthetic_A","end":156,"start":145,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":210,"start":198,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":708,"start":704,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":414,"start":350,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":705,"start":620,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":580,"start":483,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":587,"start":507,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":126,"start":123,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":198,"start":156,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18},{"feature_index":1,"overlap_bases":16}],"query_bed":[1258,1276],"query_length":18,"union_overlap_bases":18},"family":"nested","fingerprint":"d2776076fc473005732c617f5183c9dd03c60ee04bdaf8207104d3fbc3b3e3d5","group_id":"d2776076fc473005732c617f5183c9dd03c60ee04bdaf8207104d3fbc3b3e3d5","id":"INTERVALS-0015141","index":15141,"input":{"contigs":{"synthetic_A":1671,"synthetic_B":1266},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1281,"start":1253,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1275,"start":1259,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":861,"start":848,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1399,"start":1309,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":548,"start":537,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1276,"start":1258,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":25},{"feature_index":1,"overlap_bases":23},{"feature_index":4,"overlap_bases":25}],"query_bed":[344,369],"query_length":25,"union_overlap_bases":25},"family":"nested","fingerprint":"fa187d2c187ea355c6e3f8796900fdd34612f608b280a0ffa6226fcaa6575425","group_id":"fa187d2c187ea355c6e3f8796900fdd34612f608b280a0ffa6226fcaa6575425","id":"INTERVALS-0015146","index":15146,"input":{"contigs":{"synthetic_A":1137,"synthetic_B":703},"features":[{"basis":"one_closed","contig":"synthetic_B","end":374,"start":340,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":368,"start":346,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":841,"start":769,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":211,"start":155,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":425,"start":325,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":289,"start":248,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":512,"start":417,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":369,"start":345,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":36}],"query_bed":[194,230],"query_length":36,"union_overlap_bases":36},"family":"coordinate_conversion","fingerprint":"e325d4b6bc07998a2e936407cac8c9654be0b2b451e3bf95c17279122e5f69dc","group_id":"e325d4b6bc07998a2e936407cac8c9654be0b2b451e3bf95c17279122e5f69dc","id":"INTERVALS-0015159","index":15159,"input":{"contigs":{"synthetic_A":1114,"synthetic_B":1595},"features":[{"basis":"one_closed","contig":"synthetic_A","end":230,"start":195,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1325,"start":1320,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":705,"start":666,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":493,"start":448,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":84,"start":23,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":230,"start":195,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":67},{"feature_index":2,"overlap_bases":2}],"query_bed":[803,871],"query_length":68,"union_overlap_bases":68},"family":"overlapping_blocks","fingerprint":"b510100092c82e75b2cdbb66eb33914729910324dab403a3b0ceaa3d789857ee","group_id":"b510100092c82e75b2cdbb66eb33914729910324dab403a3b0ceaa3d789857ee","id":"INTERVALS-0015167","index":15167,"input":{"contigs":{"synthetic_A":1284,"synthetic_B":1722},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":806,"start":800,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":871,"start":805,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":874,"start":869,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1334,"start":1302,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1039,"start":968,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1079,"start":1023,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":772,"start":697,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":870,"start":849,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":210,"start":132,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":383,"start":282,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":871,"start":804,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":28}],"query_bed":[336,364],"query_length":28,"union_overlap_bases":28},"family":"coordinate_conversion","fingerprint":"d3d99718f31eb171450901409ae0101ea2da5ef23be583ac236ff13fff7ee402","group_id":"d3d99718f31eb171450901409ae0101ea2da5ef23be583ac236ff13fff7ee402","id":"INTERVALS-0015184","index":15184,"input":{"contigs":{"synthetic_A":1608,"synthetic_B":1535},"features":[{"basis":"one_closed","contig":"synthetic_A","end":364,"start":337,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":165,"start":83,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":826,"start":806,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":96,"start":30,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":197,"start":163,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1452,"start":1402,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":333,"start":247,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1278,"start":1257,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":197,"start":94,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":364,"start":337,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":2,"overlap_bases":21}],"query_bed":[629,693],"query_length":64,"union_overlap_bases":21},"family":"touching_boundary","fingerprint":"cb02bde0e4dce1f733d3f54bdba2fa411d2b1fa2581060db50e6d1afdbf70d05","group_id":"cb02bde0e4dce1f733d3f54bdba2fa411d2b1fa2581060db50e6d1afdbf70d05","id":"INTERVALS-0015220","index":15220,"input":{"contigs":{"synthetic_A":986,"synthetic_B":974},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":629,"start":610,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":723,"start":694,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":713,"start":673,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":546,"start":491,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":744,"start":646,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":474,"start":385,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":733,"start":705,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":221,"start":206,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":463,"start":388,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":693,"start":630,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":74},{"feature_index":2,"overlap_bases":2}],"query_bed":[834,909],"query_length":75,"union_overlap_bases":75},"family":"overlapping_blocks","fingerprint":"3391ce88e37f194016d256a42629ed171818162ad8781de172c871565a97c08c","group_id":"3391ce88e37f194016d256a42629ed171818162ad8781de172c871565a97c08c","id":"INTERVALS-0015222","index":15222,"input":{"contigs":{"synthetic_A":919,"synthetic_B":1286},"features":[{"basis":"one_closed","contig":"synthetic_B","end":837,"start":832,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":909,"start":835,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":912,"start":908,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":86,"start":39,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1052,"start":985,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":428,"start":323,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":734,"start":690,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":606,"start":605,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":55,"start":52,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":290,"start":236,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":909,"start":835,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32}],"query_bed":[341,373],"query_length":32,"union_overlap_bases":32},"family":"coordinate_conversion","fingerprint":"43cb0274da00594b8c3e4cdc6b4f8ec2c666cd4bc0441fceb8b74b1f83930171","group_id":"43cb0274da00594b8c3e4cdc6b4f8ec2c666cd4bc0441fceb8b74b1f83930171","id":"INTERVALS-0015224","index":15224,"input":{"contigs":{"synthetic_A":761,"synthetic_B":836},"features":[{"basis":"one_closed","contig":"synthetic_B","end":373,"start":342,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":406,"start":348,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":557,"start":514,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":550,"start":446,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":704,"start":593,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":748,"start":655,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":373,"start":342,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":71}],"query_bed":[138,209],"query_length":71,"union_overlap_bases":71},"family":"stranded","fingerprint":"90a4afa0f71cf0ecbc0178b115e3ecd0669597d9758993af8b8be8bb05f756d0","group_id":"90a4afa0f71cf0ecbc0178b115e3ecd0669597d9758993af8b8be8bb05f756d0","id":"INTERVALS-0015233","index":15233,"input":{"contigs":{"synthetic_A":1490,"synthetic_B":1042},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":209,"start":138,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":209,"start":138,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":479,"start":417,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":315,"start":309,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":561,"start":520,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":843,"start":770,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":480,"start":371,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":209,"start":138,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":6,"overlap_bases":45}],"query_bed":[477,547],"query_length":70,"union_overlap_bases":45},"family":"touching_boundary","fingerprint":"e2037fd433def403536db66e3aaf0889a1afe2602ce061a5eb569360432d773a","group_id":"e2037fd433def403536db66e3aaf0889a1afe2602ce061a5eb569360432d773a","id":"INTERVALS-0015235","index":15235,"input":{"contigs":{"synthetic_A":1723,"synthetic_B":692},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":477,"start":467,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":560,"start":547,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":347,"start":241,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1685,"start":1589,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":218,"start":104,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":362,"start":327,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":552,"start":502,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":80,"start":28,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":547,"start":478,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[812,852],"query_length":40,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e4adcd0c7d4f09c53982b0839a8fe181cb0cc42fa071ad546b072eedfde635c6","group_id":"e4adcd0c7d4f09c53982b0839a8fe181cb0cc42fa071ad546b072eedfde635c6","id":"INTERVALS-0015240","index":15240,"input":{"contigs":{"synthetic_A":1641,"synthetic_B":699},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":812,"start":799,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":860,"start":852,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":258,"start":169,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":24,"start":19,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1005,"start":953,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":461,"start":361,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":280,"start":208,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":852,"start":813,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":7,"overlap_bases":14}],"query_bed":[290,347],"query_length":57,"union_overlap_bases":14},"family":"touching_boundary","fingerprint":"5581601ccda9623f404c775952ad99bb097f17b695cbbadf7c47caa2c5e11504","group_id":"5581601ccda9623f404c775952ad99bb097f17b695cbbadf7c47caa2c5e11504","id":"INTERVALS-0015250","index":15250,"input":{"contigs":{"synthetic_A":1707,"synthetic_B":609},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":290,"start":277,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":360,"start":348,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1074,"start":960,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":92,"start":41,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":851,"start":811,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":515,"start":423,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":218,"start":159,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":365,"start":334,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1499,"start":1430,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":486,"start":424,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":347,"start":290,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":3,"overlap_bases":6}],"query_bed":[1099,1105],"query_length":6,"union_overlap_bases":6},"family":"touching_boundary","fingerprint":"25aa85bc08f75f2f7dcfd37f42c1017a4b6f119b84b571d42a41dd20cd8d6905","group_id":"25aa85bc08f75f2f7dcfd37f42c1017a4b6f119b84b571d42a41dd20cd8d6905","id":"INTERVALS-0015280","index":15280,"input":{"contigs":{"synthetic_A":1489,"synthetic_B":1590},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1099,"start":1082,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1126,"start":1106,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":775,"start":752,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1135,"start":1054,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":699,"start":609,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1105,"start":1099,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":43}],"query_bed":[642,685],"query_length":43,"union_overlap_bases":43},"family":"stranded","fingerprint":"108dcc2a3e13c02bdea4d44c7ff647518474ef48cd44ff5c96eb4a98f6a596c8","group_id":"108dcc2a3e13c02bdea4d44c7ff647518474ef48cd44ff5c96eb4a98f6a596c8","id":"INTERVALS-0015288","index":15288,"input":{"contigs":{"synthetic_A":1191,"synthetic_B":1541},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":685,"start":642,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":685,"start":642,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":493,"start":475,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":641,"start":553,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":420,"start":419,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":165,"start":162,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":596,"start":517,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":189,"start":97,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":595,"start":527,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":641,"start":632,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":685,"start":642,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":12},{"feature_index":1,"overlap_bases":10}],"query_bed":[820,832],"query_length":12,"union_overlap_bases":12},"family":"nested","fingerprint":"86426d866693ea1fce0afc28684d9539329d31294993ccaf5d44f9d303f2508b","group_id":"86426d866693ea1fce0afc28684d9539329d31294993ccaf5d44f9d303f2508b","id":"INTERVALS-0015291","index":15291,"input":{"contigs":{"synthetic_A":1370,"synthetic_B":1349},"features":[{"basis":"one_closed","contig":"synthetic_A","end":837,"start":816,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":831,"start":822,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1080,"start":1012,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1326,"start":1242,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1096,"start":1023,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":563,"start":514,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":464,"start":448,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1225,"start":1205,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":320,"start":307,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":921,"start":907,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":966,"start":942,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":832,"start":821,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[272,290],"query_length":18,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"fbec330a186317d8a40bb3718765fa8e674208fb708d7b5e74dd2883ba03c209","group_id":"fbec330a186317d8a40bb3718765fa8e674208fb708d7b5e74dd2883ba03c209","id":"INTERVALS-0015300","index":15300,"input":{"contigs":{"synthetic_A":768,"synthetic_B":1279},"features":[{"basis":"one_closed","contig":"synthetic_B","end":272,"start":262,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":292,"start":291,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":752,"start":702,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":302,"start":216,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":203,"start":150,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":913,"start":885,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":290,"start":272,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":6}],"query_bed":[49,55],"query_length":6,"union_overlap_bases":6},"family":"stranded","fingerprint":"bb42023afe4eee897fd188d482b30b9e9b39e3e4ea73c180c935a5225329f68e","group_id":"bb42023afe4eee897fd188d482b30b9e9b39e3e4ea73c180c935a5225329f68e","id":"INTERVALS-0015303","index":15303,"input":{"contigs":{"synthetic_A":1445,"synthetic_B":1333},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":55,"start":49,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":55,"start":49,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":676,"start":667,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":44,"start":20,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":301,"start":186,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":648,"start":560,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":989,"start":957,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":437,"start":406,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1049,"start":1025,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":238,"start":220,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":55,"start":50,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":28},{"feature_index":5,"overlap_bases":2}],"query_bed":[1115,1143],"query_length":28,"union_overlap_bases":28},"family":"coordinate_conversion","fingerprint":"62b7d1da4951c0b3ec5852101a092105a551e3114adda1bdb79c5abd47762cfd","group_id":"62b7d1da4951c0b3ec5852101a092105a551e3114adda1bdb79c5abd47762cfd","id":"INTERVALS-0015319","index":15319,"input":{"contigs":{"synthetic_A":1644,"synthetic_B":832},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1143,"start":1116,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":809,"start":713,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":268,"start":231,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":482,"start":377,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":439,"start":413,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1117,"start":1028,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":549,"start":469,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1143,"start":1116,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":33}],"query_bed":[1247,1280],"query_length":33,"union_overlap_bases":33},"family":"stranded","fingerprint":"6380006001c29c140ac288cc22f67bf8b5914033de5858c134462e1236474876","group_id":"6380006001c29c140ac288cc22f67bf8b5914033de5858c134462e1236474876","id":"INTERVALS-0015323","index":15323,"input":{"contigs":{"synthetic_A":1490,"synthetic_B":1091},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1280,"start":1247,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1280,"start":1248,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":633,"start":544,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":217,"start":153,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":58,"start":46,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1061,"start":1058,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":846,"start":795,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1280,"start":1248,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":42}],"query_bed":[653,695],"query_length":42,"union_overlap_bases":42},"family":"coordinate_conversion","fingerprint":"4b52544811b393109e228db2bb64c5c7a2ca0a844e8b2e8284394791bfb03ff4","group_id":"4b52544811b393109e228db2bb64c5c7a2ca0a844e8b2e8284394791bfb03ff4","id":"INTERVALS-0015324","index":15324,"input":{"contigs":{"synthetic_A":1204,"synthetic_B":610},"features":[{"basis":"one_closed","contig":"synthetic_A","end":695,"start":654,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":825,"start":735,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":491,"start":383,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":423,"start":323,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":448,"start":439,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":695,"start":654,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":44},{"feature_index":8,"overlap_bases":24}],"query_bed":[170,214],"query_length":44,"union_overlap_bases":44},"family":"coordinate_conversion","fingerprint":"5ff7caf453b2bd0072cbbceaa32da85818a0c4c6ee6c7667524e608dfd1304ce","group_id":"5ff7caf453b2bd0072cbbceaa32da85818a0c4c6ee6c7667524e608dfd1304ce","id":"INTERVALS-0015344","index":15344,"input":{"contigs":{"synthetic_A":781,"synthetic_B":1190},"features":[{"basis":"one_closed","contig":"synthetic_A","end":214,"start":171,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":302,"start":290,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":636,"start":559,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":452,"start":399,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":782,"start":743,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":55,"start":13,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":252,"start":133,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":391,"start":379,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":252,"start":191,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":718,"start":695,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":168,"start":137,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":214,"start":171,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":21},{"feature_index":2,"overlap_bases":2},{"feature_index":8,"overlap_bases":15}],"query_bed":[443,465],"query_length":22,"union_overlap_bases":22},"family":"overlapping_blocks","fingerprint":"4833db9c2da99f7df159bbb842a51dab8888adb09fc3eb13b2c6157cee2d46a5","group_id":"4833db9c2da99f7df159bbb842a51dab8888adb09fc3eb13b2c6157cee2d46a5","id":"INTERVALS-0015357","index":15357,"input":{"contigs":{"synthetic_A":1718,"synthetic_B":1109},"features":[{"basis":"one_closed","contig":"synthetic_B","end":446,"start":441,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":465,"start":445,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":468,"start":463,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":266,"start":226,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":827,"start":777,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1691,"start":1596,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":506,"start":505,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":254,"start":184,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":552,"start":450,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":768,"start":654,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":465,"start":443,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":70}],"query_bed":[187,257],"query_length":70,"union_overlap_bases":70},"family":"stranded","fingerprint":"11ed37d6830efe67b3344e76e47f228fef2814019fd51102138c988710f36db1","group_id":"11ed37d6830efe67b3344e76e47f228fef2814019fd51102138c988710f36db1","id":"INTERVALS-0015363","index":15363,"input":{"contigs":{"synthetic_A":636,"synthetic_B":1514},"features":[{"basis":"one_closed","contig":"synthetic_A","end":257,"start":188,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":257,"start":188,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1239,"start":1143,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1331,"start":1255,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":386,"start":277,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":421,"start":313,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":93,"start":66,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":209,"start":159,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":832,"start":762,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":249,"start":156,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":469,"start":391,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":257,"start":188,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[94,110],"query_length":16,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"baaa13bc34de950a0b3ab7a43e13d22faa4fd760bd26b824a047790778cfae15","group_id":"baaa13bc34de950a0b3ab7a43e13d22faa4fd760bd26b824a047790778cfae15","id":"INTERVALS-0015375","index":15375,"input":{"contigs":{"synthetic_A":744,"synthetic_B":748},"features":[{"basis":"one_closed","contig":"synthetic_B","end":94,"start":87,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":126,"start":110,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":588,"start":499,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":476,"start":418,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":235,"start":204,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":225,"start":142,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":155,"start":119,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":110,"start":95,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":33},{"feature_index":2,"overlap_bases":2}],"query_bed":[1235,1269],"query_length":34,"union_overlap_bases":34},"family":"overlapping_blocks","fingerprint":"b7d4c59c635d38a96d60695c396cc2a233d0f0de5c591794f3cccfe66337528b","group_id":"b7d4c59c635d38a96d60695c396cc2a233d0f0de5c591794f3cccfe66337528b","id":"INTERVALS-0015377","index":15377,"input":{"contigs":{"synthetic_A":1264,"synthetic_B":1752},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1238,"start":1232,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1269,"start":1237,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1272,"start":1267,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1127,"start":1116,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1653,"start":1543,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1269,"start":1235,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":54}],"query_bed":[407,461],"query_length":54,"union_overlap_bases":54},"family":"coordinate_conversion","fingerprint":"3b222e4a1bd47148f12adadce0ecfecf19f0c00dbc0a7e6b6909ed32cd83b80a","group_id":"3b222e4a1bd47148f12adadce0ecfecf19f0c00dbc0a7e6b6909ed32cd83b80a","id":"INTERVALS-0015384","index":15384,"input":{"contigs":{"synthetic_A":1533,"synthetic_B":764},"features":[{"basis":"one_closed","contig":"synthetic_B","end":461,"start":408,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1349,"start":1333,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1140,"start":1131,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":600,"start":507,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":216,"start":161,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":216,"start":181,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":383,"start":277,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":234,"start":173,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":174,"start":143,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":530,"start":431,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":461,"start":408,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":79},{"feature_index":2,"overlap_bases":2}],"query_bed":[648,728],"query_length":80,"union_overlap_bases":80},"family":"overlapping_blocks","fingerprint":"1d8f815ca4be8637f2a97ec27b3ea830dad9b86511f13cbd0dd2a3b93dd35d01","group_id":"1d8f815ca4be8637f2a97ec27b3ea830dad9b86511f13cbd0dd2a3b93dd35d01","id":"INTERVALS-0015387","index":15387,"input":{"contigs":{"synthetic_A":1378,"synthetic_B":1135},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":651,"start":645,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":728,"start":649,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":731,"start":727,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":306,"start":302,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":46,"start":16,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":945,"start":944,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":621,"start":524,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":147,"start":101,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":125,"start":7,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":728,"start":649,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1142,1192],"query_length":50,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"85d694da11ab5a16a38de549e443fb583d1e7b13bf115199497e2fd4127ef138","group_id":"85d694da11ab5a16a38de549e443fb583d1e7b13bf115199497e2fd4127ef138","id":"INTERVALS-0015400","index":15400,"input":{"contigs":{"synthetic_A":1382,"synthetic_B":1445},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1142,"start":1132,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1224,"start":1193,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":159,"start":135,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":219,"start":200,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1220,"start":1178,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1279,"start":1254,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1192,"start":1143,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":32},{"feature_index":2,"overlap_bases":2}],"query_bed":[543,576],"query_length":33,"union_overlap_bases":33},"family":"overlapping_blocks","fingerprint":"655b2702b1be5572680fd4c36b9d9f0555f1fb9a4bd2ff1604b225f8b567ab64","group_id":"655b2702b1be5572680fd4c36b9d9f0555f1fb9a4bd2ff1604b225f8b567ab64","id":"INTERVALS-0015407","index":15407,"input":{"contigs":{"synthetic_A":1681,"synthetic_B":807},"features":[{"basis":"one_closed","contig":"synthetic_A","end":546,"start":541,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":576,"start":544,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":579,"start":574,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":52,"start":7,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1174,"start":1063,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":326,"start":322,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":535,"start":429,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":902,"start":851,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":266,"start":194,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":576,"start":543,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":80}],"query_bed":[229,309],"query_length":80,"union_overlap_bases":80},"family":"stranded","fingerprint":"9beea924659c61f0d0f38fb493a9aaa0fb01199a684d9cf4196f37931eff6cd2","group_id":"9beea924659c61f0d0f38fb493a9aaa0fb01199a684d9cf4196f37931eff6cd2","id":"INTERVALS-0015408","index":15408,"input":{"contigs":{"synthetic_A":677,"synthetic_B":1706},"features":[{"basis":"one_closed","contig":"synthetic_A","end":309,"start":230,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":309,"start":229,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":305,"start":287,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1618,"start":1567,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1178,"start":1137,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":558,"start":478,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":309,"start":230,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":13}],"query_bed":[598,611],"query_length":13,"union_overlap_bases":13},"family":"stranded","fingerprint":"d01c6538f14a7b79d53a1e3da498fcafb3096322db4044a85b650691398a790c","group_id":"d01c6538f14a7b79d53a1e3da498fcafb3096322db4044a85b650691398a790c","id":"INTERVALS-0015418","index":15418,"input":{"contigs":{"synthetic_A":989,"synthetic_B":1360},"features":[{"basis":"one_closed","contig":"synthetic_A","end":611,"start":599,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":611,"start":598,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":918,"start":865,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":652,"start":604,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":944,"start":926,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":259,"start":195,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":76,"start":17,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":572,"start":517,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":294,"start":233,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":672,"start":596,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":336,"start":270,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":616,"start":522,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":611,"start":598,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":73},{"feature_index":6,"overlap_bases":37},{"feature_index":9,"overlap_bases":53}],"query_bed":[313,386],"query_length":73,"union_overlap_bases":73},"family":"stranded","fingerprint":"c303d7781fc37d3988b3571b655b34f5172ba5a8330e9c6284463ad6910ea649","group_id":"c303d7781fc37d3988b3571b655b34f5172ba5a8330e9c6284463ad6910ea649","id":"INTERVALS-0015443","index":15443,"input":{"contigs":{"synthetic_A":1059,"synthetic_B":844},"features":[{"basis":"one_closed","contig":"synthetic_A","end":386,"start":314,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":386,"start":314,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":257,"start":154,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":418,"start":320,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":668,"start":586,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":500,"start":499,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":350,"start":257,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":189,"start":173,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":258,"start":187,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":391,"start":334,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":756,"start":694,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":689,"start":633,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":386,"start":313,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":23},{"feature_index":2,"overlap_bases":2}],"query_bed":[487,511],"query_length":24,"union_overlap_bases":24},"family":"overlapping_blocks","fingerprint":"f30081b0fb2c4ad07ee2c5345e1a7238caf02c95aad98ec5ed461b234d53e572","group_id":"f30081b0fb2c4ad07ee2c5345e1a7238caf02c95aad98ec5ed461b234d53e572","id":"INTERVALS-0015457","index":15457,"input":{"contigs":{"synthetic_A":764,"synthetic_B":862},"features":[{"basis":"one_closed","contig":"synthetic_B","end":490,"start":485,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":511,"start":489,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":514,"start":510,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":527,"start":479,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":562,"start":544,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":478,"start":393,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":610,"start":575,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":278,"start":249,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":230,"start":225,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":511,"start":488,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":29}],"query_bed":[566,595],"query_length":29,"union_overlap_bases":29},"family":"stranded","fingerprint":"ccc0adeaf220b06a28933494992b544c4f172561741017bff3f1fe298b847dfe","group_id":"ccc0adeaf220b06a28933494992b544c4f172561741017bff3f1fe298b847dfe","id":"INTERVALS-0015458","index":15458,"input":{"contigs":{"synthetic_A":1518,"synthetic_B":993},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":595,"start":566,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":595,"start":566,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":708,"start":684,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":740,"start":725,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":687,"start":576,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":537,"start":496,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1421,"start":1398,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":233,"start":232,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":76,"start":65,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":595,"start":566,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":20}],"query_bed":[166,186],"query_length":20,"union_overlap_bases":20},"family":"coordinate_conversion","fingerprint":"e7bea64c2ce00521ab283591a6f0c52e31c69b7bbf42ffbbdb5bab3289fa7b44","group_id":"e7bea64c2ce00521ab283591a6f0c52e31c69b7bbf42ffbbdb5bab3289fa7b44","id":"INTERVALS-0015464","index":15464,"input":{"contigs":{"synthetic_A":1256,"synthetic_B":1461},"features":[{"basis":"one_closed","contig":"synthetic_A","end":186,"start":167,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":86,"start":72,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":908,"start":823,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":254,"start":236,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":80,"start":27,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":575,"start":571,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":220,"start":138,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":501,"start":420,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":332,"start":290,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":695,"start":580,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":186,"start":167,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":68}],"query_bed":[132,200],"query_length":68,"union_overlap_bases":68},"family":"stranded","fingerprint":"194a831c94de0f5e8a40f9f7f8925b98b72388655fcb1e8c3133a9838eb50d7c","group_id":"194a831c94de0f5e8a40f9f7f8925b98b72388655fcb1e8c3133a9838eb50d7c","id":"INTERVALS-0015473","index":15473,"input":{"contigs":{"synthetic_A":1765,"synthetic_B":1761},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":200,"start":132,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":200,"start":133,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":488,"start":372,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":66,"start":4,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":333,"start":331,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":512,"start":503,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":69,"start":59,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":200,"start":132,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":63},{"feature_index":1,"overlap_bases":61}],"query_bed":[614,677],"query_length":63,"union_overlap_bases":63},"family":"nested","fingerprint":"845c86be4b563f043c1ad7ee3708ec7e01853797948f2116cf7d4f8cfb0aa1b9","group_id":"845c86be4b563f043c1ad7ee3708ec7e01853797948f2116cf7d4f8cfb0aa1b9","id":"INTERVALS-0015476","index":15476,"input":{"contigs":{"synthetic_A":780,"synthetic_B":863},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":682,"start":609,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":676,"start":615,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":490,"start":417,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":184,"start":117,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":335,"start":249,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":422,"start":409,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":275,"start":224,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":227,"start":125,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":677,"start":615,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":36},{"feature_index":2,"overlap_bases":2}],"query_bed":[139,176],"query_length":37,"union_overlap_bases":37},"family":"overlapping_blocks","fingerprint":"695cf5d830ba70588fd8a8dba00fb585a76f6b51cdc695730f27079123e9b219","group_id":"695cf5d830ba70588fd8a8dba00fb585a76f6b51cdc695730f27079123e9b219","id":"INTERVALS-0015477","index":15477,"input":{"contigs":{"synthetic_A":1619,"synthetic_B":720},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":142,"start":136,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":176,"start":140,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":179,"start":174,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1277,"start":1203,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":470,"start":429,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":511,"start":415,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":742,"start":625,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1303,"start":1239,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":357,"start":345,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":176,"start":140,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":7}],"query_bed":[726,733],"query_length":7,"union_overlap_bases":7},"family":"coordinate_conversion","fingerprint":"8281062618d823a03c3a9e76590aea1b9cf8ce328fbed37150d0da831f48b2c3","group_id":"8281062618d823a03c3a9e76590aea1b9cf8ce328fbed37150d0da831f48b2c3","id":"INTERVALS-0015484","index":15484,"input":{"contigs":{"synthetic_A":1642,"synthetic_B":960},"features":[{"basis":"one_closed","contig":"synthetic_B","end":733,"start":727,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":857,"start":840,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":268,"start":216,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":494,"start":407,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":514,"start":438,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":733,"start":727,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[560,634],"query_length":74,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"6958e7722555eed9bc7510a6d755620984d2f1b20816df1c7e96ae4e4955dcd2","group_id":"6958e7722555eed9bc7510a6d755620984d2f1b20816df1c7e96ae4e4955dcd2","id":"INTERVALS-0015490","index":15490,"input":{"contigs":{"synthetic_A":1285,"synthetic_B":1296},"features":[{"basis":"one_closed","contig":"synthetic_B","end":560,"start":545,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":652,"start":634,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":298,"start":185,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1147,"start":1089,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":682,"start":665,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":65,"start":11,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1168,"start":1081,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":105,"start":22,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":165,"start":115,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":634,"start":561,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":47},{"feature_index":6,"overlap_bases":43}],"query_bed":[201,248],"query_length":47,"union_overlap_bases":47},"family":"stranded","fingerprint":"ce7d41a2e9180ddd8f7cb3bc75de70b03c959824a4d9d707e4d422b10bea29d8","group_id":"ce7d41a2e9180ddd8f7cb3bc75de70b03c959824a4d9d707e4d422b10bea29d8","id":"INTERVALS-0015503","index":15503,"input":{"contigs":{"synthetic_A":812,"synthetic_B":1442},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":248,"start":201,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":248,"start":201,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":583,"start":578,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":649,"start":540,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":49,"start":36,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1098,"start":991,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":244,"start":143,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":542,"start":451,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":665,"start":648,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1037,"start":1004,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":248,"start":202,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":71}],"query_bed":[1384,1455],"query_length":71,"union_overlap_bases":71},"family":"coordinate_conversion","fingerprint":"1d16e2066ad380bbc7739a1396587df6479094988233ba47c4db56776491ca09","group_id":"1d16e2066ad380bbc7739a1396587df6479094988233ba47c4db56776491ca09","id":"INTERVALS-0015509","index":15509,"input":{"contigs":{"synthetic_A":1792,"synthetic_B":1053},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1455,"start":1385,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":308,"start":214,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":869,"start":797,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":673,"start":579,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":787,"start":782,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":292,"start":185,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":575,"start":483,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":115,"start":26,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":252,"start":171,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":612,"start":570,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":532,"start":457,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":590,"start":554,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1455,"start":1385,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[357,387],"query_length":30,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"4566ee7cd9f469bcb031d174d356be23e9ae8e3b381b97a428c5bd721bf4ca04","group_id":"4566ee7cd9f469bcb031d174d356be23e9ae8e3b381b97a428c5bd721bf4ca04","id":"INTERVALS-0015510","index":15510,"input":{"contigs":{"synthetic_A":764,"synthetic_B":1152},"features":[{"basis":"one_closed","contig":"synthetic_A","end":357,"start":351,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":401,"start":387,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":571,"start":476,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":554,"start":517,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":130,"start":114,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":616,"start":538,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":387,"start":358,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[556,630],"query_length":74,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"69a37fee23219ca9f0ed50ef966a6b69913e336c596dfaf6716ecfd442d0b79d","group_id":"69a37fee23219ca9f0ed50ef966a6b69913e336c596dfaf6716ecfd442d0b79d","id":"INTERVALS-0015515","index":15515,"input":{"contigs":{"synthetic_A":1621,"synthetic_B":663},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":556,"start":555,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":661,"start":631,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1301,"start":1275,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1474,"start":1463,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":145,"start":43,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":146,"start":135,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":94,"start":37,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1178,"start":1073,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":372,"start":296,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":189,"start":116,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":247,"start":244,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":630,"start":557,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":44}],"query_bed":[277,321],"query_length":44,"union_overlap_bases":44},"family":"stranded","fingerprint":"8b40439e76d633b58f93dcbb02d06a00182b9a4220ccff8d3081aa7430fc51ce","group_id":"8b40439e76d633b58f93dcbb02d06a00182b9a4220ccff8d3081aa7430fc51ce","id":"INTERVALS-0015528","index":15528,"input":{"contigs":{"synthetic_A":1526,"synthetic_B":653},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":321,"start":277,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":321,"start":278,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":759,"start":642,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":84,"start":19,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":251,"start":192,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1384,"start":1324,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1403,"start":1306,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":614,"start":520,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1202,"start":1163,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":404,"start":327,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1246,"start":1175,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":254,"start":173,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":321,"start":277,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":79}],"query_bed":[591,670],"query_length":79,"union_overlap_bases":79},"family":"stranded","fingerprint":"1e7fd78863c4d2023c662f6c57684cc9583a2296eab9e1739d34b6a851834a17","group_id":"1e7fd78863c4d2023c662f6c57684cc9583a2296eab9e1739d34b6a851834a17","id":"INTERVALS-0015548","index":15548,"input":{"contigs":{"synthetic_A":1705,"synthetic_B":1376},"features":[{"basis":"one_closed","contig":"synthetic_B","end":670,"start":592,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":670,"start":592,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":704,"start":701,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":626,"start":608,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":968,"start":861,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":913,"start":910,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1174,"start":1151,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1172,"start":1147,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":670,"start":592,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":12}],"query_bed":[658,670],"query_length":12,"union_overlap_bases":12},"family":"stranded","fingerprint":"c7dfef02be4fdfe67b4b7cf89b72728d110afac190da2a9957f5d7476a743b1a","group_id":"c7dfef02be4fdfe67b4b7cf89b72728d110afac190da2a9957f5d7476a743b1a","id":"INTERVALS-0015553","index":15553,"input":{"contigs":{"synthetic_A":1037,"synthetic_B":1533},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":670,"start":658,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":670,"start":658,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":583,"start":539,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":254,"start":137,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":102,"start":13,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":461,"start":413,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":855,"start":842,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":995,"start":886,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":308,"start":272,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1382,"start":1297,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":391,"start":325,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":644,"start":626,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":670,"start":658,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56},{"feature_index":6,"overlap_bases":13}],"query_bed":[588,644],"query_length":56,"union_overlap_bases":56},"family":"coordinate_conversion","fingerprint":"eff1e0b835e62c8baace45a59787b7f4fbae87b50241d4c6d130ce619c981c04","group_id":"eff1e0b835e62c8baace45a59787b7f4fbae87b50241d4c6d130ce619c981c04","id":"INTERVALS-0015554","index":15554,"input":{"contigs":{"synthetic_A":1671,"synthetic_B":882},"features":[{"basis":"one_closed","contig":"synthetic_B","end":644,"start":589,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":820,"start":707,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":534,"start":517,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1581,"start":1517,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":121,"start":42,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":487,"start":400,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":601,"start":482,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":928,"start":860,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":644,"start":589,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":29}],"query_bed":[116,145],"query_length":29,"union_overlap_bases":29},"family":"stranded","fingerprint":"33e831f69b3b892d06ee830178aabcdc28e264d9ab64376821a40470c2495626","group_id":"33e831f69b3b892d06ee830178aabcdc28e264d9ab64376821a40470c2495626","id":"INTERVALS-0015568","index":15568,"input":{"contigs":{"synthetic_A":679,"synthetic_B":1204},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":145,"start":116,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":145,"start":117,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":584,"start":534,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":562,"start":506,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":978,"start":903,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":439,"start":330,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":296,"start":208,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":820,"start":783,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":560,"start":496,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":702,"start":630,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":390,"start":349,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":533,"start":509,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":145,"start":116,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":50},{"feature_index":2,"overlap_bases":2}],"query_bed":[260,311],"query_length":51,"union_overlap_bases":51},"family":"overlapping_blocks","fingerprint":"2c355830ee7aaefed7791774a8982700bcf551474fe5dd9800994e322fdf94db","group_id":"2c355830ee7aaefed7791774a8982700bcf551474fe5dd9800994e322fdf94db","id":"INTERVALS-0015572","index":15572,"input":{"contigs":{"synthetic_A":1133,"synthetic_B":693},"features":[{"basis":"one_closed","contig":"synthetic_A","end":263,"start":258,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":311,"start":261,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":314,"start":310,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":385,"start":310,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":274,"start":233,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":138,"start":112,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":800,"start":742,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":605,"start":560,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":311,"start":260,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":27},{"feature_index":2,"overlap_bases":2},{"feature_index":8,"overlap_bases":13}],"query_bed":[545,573],"query_length":28,"union_overlap_bases":28},"family":"overlapping_blocks","fingerprint":"dbbc2bf8b32e3c085e1db28ad7af22a17e1f5c68f63c95ff0d3483e4bd645082","group_id":"dbbc2bf8b32e3c085e1db28ad7af22a17e1f5c68f63c95ff0d3483e4bd645082","id":"INTERVALS-0015587","index":15587,"input":{"contigs":{"synthetic_A":1151,"synthetic_B":1217},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":548,"start":542,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":573,"start":547,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":576,"start":571,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":669,"start":665,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":100,"start":59,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":481,"start":423,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":399,"start":371,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":702,"start":654,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":662,"start":561,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":573,"start":545,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[46,82],"query_length":36,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"bdb9692cb9ada096b8a0a48492a0fab838b0d5bdcfe8b8650fd8b6933ad4491f","group_id":"bdb9692cb9ada096b8a0a48492a0fab838b0d5bdcfe8b8650fd8b6933ad4491f","id":"INTERVALS-0015590","index":15590,"input":{"contigs":{"synthetic_A":1705,"synthetic_B":1394},"features":[{"basis":"one_closed","contig":"synthetic_B","end":46,"start":44,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":110,"start":83,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":709,"start":597,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":226,"start":179,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":893,"start":801,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1370,"start":1268,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":219,"start":123,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1015,"start":924,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":787,"start":777,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":978,"start":950,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":82,"start":46,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":73},{"feature_index":2,"overlap_bases":2}],"query_bed":[630,704],"query_length":74,"union_overlap_bases":74},"family":"overlapping_blocks","fingerprint":"41db2f4802289be98d8adeb59a6ac70036a8808c12b2b0f37c488c6fa80e1260","group_id":"41db2f4802289be98d8adeb59a6ac70036a8808c12b2b0f37c488c6fa80e1260","id":"INTERVALS-0015592","index":15592,"input":{"contigs":{"synthetic_A":1485,"synthetic_B":1548},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":633,"start":627,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":704,"start":631,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":707,"start":702,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1162,"start":1076,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":913,"start":885,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":379,"start":353,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":882,"start":802,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":601,"start":552,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1292,"start":1277,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":784,"start":723,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":156,"start":49,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":704,"start":631,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":33},{"feature_index":5,"overlap_bases":26}],"query_bed":[617,650],"query_length":33,"union_overlap_bases":33},"family":"stranded","fingerprint":"dc161f3c51c45229289e602d615664a761fe9d5eb1dc321fdcbbfdf4413dc37d","group_id":"dc161f3c51c45229289e602d615664a761fe9d5eb1dc321fdcbbfdf4413dc37d","id":"INTERVALS-0015593","index":15593,"input":{"contigs":{"synthetic_A":1785,"synthetic_B":1373},"features":[{"basis":"one_closed","contig":"synthetic_A","end":650,"start":618,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":650,"start":618,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1536,"start":1465,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1231,"start":1164,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1194,"start":1122,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":720,"start":625,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":133,"start":55,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1470,"start":1460,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":696,"start":677,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":863,"start":748,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":762,"start":713,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":650,"start":618,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":12}],"query_bed":[449,461],"query_length":12,"union_overlap_bases":12},"family":"stranded","fingerprint":"fe4c5c6a8cad9124f13dd81e876cd70ba5e1339ec78b35b737342e838f12a1b6","group_id":"fe4c5c6a8cad9124f13dd81e876cd70ba5e1339ec78b35b737342e838f12a1b6","id":"INTERVALS-0015613","index":15613,"input":{"contigs":{"synthetic_A":964,"synthetic_B":1669},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":461,"start":449,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":461,"start":449,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":748,"start":734,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":640,"start":546,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":359,"start":318,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":404,"start":356,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":75,"start":32,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":278,"start":222,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1181,"start":1105,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":158,"start":154,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":461,"start":450,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":35}],"query_bed":[372,407],"query_length":35,"union_overlap_bases":35},"family":"coordinate_conversion","fingerprint":"a594bb30771890b3e2be69f89b116fc67697bc3c6f15ac9efeae2672932062fc","group_id":"a594bb30771890b3e2be69f89b116fc67697bc3c6f15ac9efeae2672932062fc","id":"INTERVALS-0015614","index":15614,"input":{"contigs":{"synthetic_A":768,"synthetic_B":698},"features":[{"basis":"one_closed","contig":"synthetic_A","end":407,"start":373,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":209,"start":199,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":86,"start":28,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":538,"start":518,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":450,"start":335,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":491,"start":437,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":641,"start":578,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":140,"start":25,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":225,"start":211,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":299,"start":267,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":234,"start":209,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":263,"start":183,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":407,"start":373,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":34}],"query_bed":[299,333],"query_length":34,"union_overlap_bases":34},"family":"coordinate_conversion","fingerprint":"ea4637fe5b594b52e639885df7c1c553ac1fca89908d1a96ed5d7534595e9ba5","group_id":"ea4637fe5b594b52e639885df7c1c553ac1fca89908d1a96ed5d7534595e9ba5","id":"INTERVALS-0015624","index":15624,"input":{"contigs":{"synthetic_A":1244,"synthetic_B":1535},"features":[{"basis":"one_closed","contig":"synthetic_B","end":333,"start":300,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":597,"start":557,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1257,"start":1173,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":104,"start":60,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":354,"start":257,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":207,"start":162,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":919,"start":894,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":177,"start":120,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1085,"start":980,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":148,"start":66,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":333,"start":300,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":80}],"query_bed":[244,324],"query_length":80,"union_overlap_bases":80},"family":"stranded","fingerprint":"a6312b8c76cbbae49653b91e2763fada52ef02daf617ce5e919e4b1b512c29a6","group_id":"a6312b8c76cbbae49653b91e2763fada52ef02daf617ce5e919e4b1b512c29a6","id":"INTERVALS-0015653","index":15653,"input":{"contigs":{"synthetic_A":763,"synthetic_B":1434},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":324,"start":244,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":324,"start":244,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":149,"start":122,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":56,"start":13,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":330,"start":230,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":548,"start":536,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":467,"start":368,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":481,"start":442,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":196,"start":146,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":573,"start":487,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":324,"start":245,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":5}],"query_bed":[223,228],"query_length":5,"union_overlap_bases":5},"family":"coordinate_conversion","fingerprint":"f53991e20e862c000fdb7cd4ac5b76710f9927b9c69b3e99c4c0dd60cd20fae7","group_id":"f53991e20e862c000fdb7cd4ac5b76710f9927b9c69b3e99c4c0dd60cd20fae7","id":"INTERVALS-0015669","index":15669,"input":{"contigs":{"synthetic_A":1590,"synthetic_B":1671},"features":[{"basis":"one_closed","contig":"synthetic_A","end":228,"start":224,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":333,"start":244,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1279,"start":1273,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1099,"start":1036,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":394,"start":377,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1006,"start":920,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":194,"start":137,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":228,"start":224,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":24}],"query_bed":[502,526],"query_length":24,"union_overlap_bases":24},"family":"coordinate_conversion","fingerprint":"fab4469e0d95b33441127452979f2e6ce3f68a694bc6036c29662eba21e74df9","group_id":"fab4469e0d95b33441127452979f2e6ce3f68a694bc6036c29662eba21e74df9","id":"INTERVALS-0015679","index":15679,"input":{"contigs":{"synthetic_A":1603,"synthetic_B":844},"features":[{"basis":"one_closed","contig":"synthetic_A","end":526,"start":503,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":100,"start":3,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":679,"start":560,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":988,"start":973,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":574,"start":530,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":526,"start":503,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":33},{"feature_index":8,"overlap_bases":33},{"feature_index":10,"overlap_bases":33}],"query_bed":[432,465],"query_length":33,"union_overlap_bases":33},"family":"coordinate_conversion","fingerprint":"63020a16a19b9af4b97f606243aae28de01babfc2c99f9a584033e1e897d7da7","group_id":"63020a16a19b9af4b97f606243aae28de01babfc2c99f9a584033e1e897d7da7","id":"INTERVALS-0015709","index":15709,"input":{"contigs":{"synthetic_A":1788,"synthetic_B":1178},"features":[{"basis":"one_closed","contig":"synthetic_B","end":465,"start":433,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":683,"start":659,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1462,"start":1356,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1416,"start":1328,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":235,"start":217,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":165,"start":89,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1624,"start":1529,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1649,"start":1622,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":495,"start":397,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1046,"start":947,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":488,"start":410,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":972,"start":931,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":465,"start":433,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[723,774],"query_length":51,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"3b0216aa00e5c47069f2999f5325fc8d2137e2a9b4e7834524e8bd98de26d966","group_id":"3b0216aa00e5c47069f2999f5325fc8d2137e2a9b4e7834524e8bd98de26d966","id":"INTERVALS-0015710","index":15710,"input":{"contigs":{"synthetic_A":1793,"synthetic_B":1721},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":723,"start":710,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":796,"start":774,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":566,"start":521,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1430,"start":1311,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":720,"start":626,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":701,"start":624,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":684,"start":622,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":774,"start":724,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":33},{"feature_index":1,"overlap_bases":31}],"query_bed":[187,220],"query_length":33,"union_overlap_bases":33},"family":"nested","fingerprint":"1aa9d38ed22070efbcf53494205e08c0f796ee9a2702af1c3ec0abdb974930b3","group_id":"1aa9d38ed22070efbcf53494205e08c0f796ee9a2702af1c3ec0abdb974930b3","id":"INTERVALS-0015711","index":15711,"input":{"contigs":{"synthetic_A":1645,"synthetic_B":694},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":225,"start":182,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":219,"start":188,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":528,"start":408,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":535,"start":525,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":908,"start":880,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":529,"start":458,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":220,"start":187,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":40}],"query_bed":[515,555],"query_length":40,"union_overlap_bases":40},"family":"coordinate_conversion","fingerprint":"479320eeeb4b845c5317dae8649679d8306d141dbf0ab37e16958b68c3d16b9b","group_id":"479320eeeb4b845c5317dae8649679d8306d141dbf0ab37e16958b68c3d16b9b","id":"INTERVALS-0015719","index":15719,"input":{"contigs":{"synthetic_A":975,"synthetic_B":802},"features":[{"basis":"one_closed","contig":"synthetic_B","end":555,"start":516,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":755,"start":688,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":652,"start":643,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":230,"start":229,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":398,"start":345,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":153,"start":35,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":209,"start":119,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":267,"start":224,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":555,"start":516,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32},{"feature_index":9,"overlap_bases":32}],"query_bed":[453,485],"query_length":32,"union_overlap_bases":32},"family":"coordinate_conversion","fingerprint":"d755bb2478b350ff279faabcc4f1d63685c3b05627cff60539643f51a694a89a","group_id":"d755bb2478b350ff279faabcc4f1d63685c3b05627cff60539643f51a694a89a","id":"INTERVALS-0015729","index":15729,"input":{"contigs":{"synthetic_A":701,"synthetic_B":785},"features":[{"basis":"one_closed","contig":"synthetic_B","end":485,"start":454,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":319,"start":231,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":33,"start":19,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":589,"start":487,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":522,"start":507,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":454,"start":448,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":206,"start":189,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":357,"start":238,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":478,"start":461,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":506,"start":437,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":573,"start":493,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":349,"start":234,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":485,"start":454,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[129,186],"query_length":57,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"53a3260444de9431f2dfbbfe2d7c7e29e7e139ca90932acac1e741da23f14002","group_id":"53a3260444de9431f2dfbbfe2d7c7e29e7e139ca90932acac1e741da23f14002","id":"INTERVALS-0015735","index":15735,"input":{"contigs":{"synthetic_A":1240,"synthetic_B":1531},"features":[{"basis":"one_closed","contig":"synthetic_A","end":129,"start":118,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":221,"start":187,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1464,"start":1381,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":31,"start":29,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":953,"start":943,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1017,"start":996,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1129,"start":1053,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":428,"start":359,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1255,"start":1235,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":186,"start":130,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[237,306],"query_length":69,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"eda5fd30e565a892230d954a0cca71dc3dcd9fa27d8909383d870342839502dc","group_id":"eda5fd30e565a892230d954a0cca71dc3dcd9fa27d8909383d870342839502dc","id":"INTERVALS-0015765","index":15765,"input":{"contigs":{"synthetic_A":1309,"synthetic_B":939},"features":[{"basis":"one_closed","contig":"synthetic_B","end":237,"start":230,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":313,"start":307,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":914,"start":866,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":692,"start":623,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":343,"start":293,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":306,"start":237,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":31},{"feature_index":2,"overlap_bases":2}],"query_bed":[1262,1294],"query_length":32,"union_overlap_bases":32},"family":"overlapping_blocks","fingerprint":"801a9e9c272dac8ab12a4e6a92dcfedd5335ee1352efda4f936a25dde644c489","group_id":"801a9e9c272dac8ab12a4e6a92dcfedd5335ee1352efda4f936a25dde644c489","id":"INTERVALS-0015777","index":15777,"input":{"contigs":{"synthetic_A":1596,"synthetic_B":636},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1265,"start":1259,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1294,"start":1264,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1297,"start":1292,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1476,"start":1451,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":251,"start":245,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":567,"start":448,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1043,"start":986,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":396,"start":312,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":694,"start":623,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":195,"start":89,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1294,"start":1262,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":5},{"feature_index":1,"overlap_bases":3}],"query_bed":[236,241],"query_length":5,"union_overlap_bases":5},"family":"nested","fingerprint":"3b7f22eee8bdbbe55e986f2e25e75a315aef15812e0ed8398999a40d11c92f55","group_id":"3b7f22eee8bdbbe55e986f2e25e75a315aef15812e0ed8398999a40d11c92f55","id":"INTERVALS-0015781","index":15781,"input":{"contigs":{"synthetic_A":825,"synthetic_B":1726},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":246,"start":231,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":240,"start":237,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":990,"start":902,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":554,"start":459,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":772,"start":656,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":657,"start":557,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":241,"start":237,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":55},{"feature_index":2,"overlap_bases":2}],"query_bed":[515,571],"query_length":56,"union_overlap_bases":56},"family":"overlapping_blocks","fingerprint":"e84fa1d8fa75b893ffb965319f43f59b8937a3923b2dec381a3bcf23c18af7c0","group_id":"e84fa1d8fa75b893ffb965319f43f59b8937a3923b2dec381a3bcf23c18af7c0","id":"INTERVALS-0015782","index":15782,"input":{"contigs":{"synthetic_A":1606,"synthetic_B":830},"features":[{"basis":"one_closed","contig":"synthetic_B","end":518,"start":513,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":571,"start":516,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":574,"start":569,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":428,"start":409,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":531,"start":435,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":571,"start":516,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":37}],"query_bed":[680,717],"query_length":37,"union_overlap_bases":37},"family":"coordinate_conversion","fingerprint":"10c6ffe030f92747dcb07553bf918570a3de906d82e34839334d9bdfe13b1f38","group_id":"10c6ffe030f92747dcb07553bf918570a3de906d82e34839334d9bdfe13b1f38","id":"INTERVALS-0015784","index":15784,"input":{"contigs":{"synthetic_A":1289,"synthetic_B":1043},"features":[{"basis":"one_closed","contig":"synthetic_B","end":717,"start":681,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":227,"start":176,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":480,"start":419,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":723,"start":681,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":392,"start":378,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":303,"start":229,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1008,"start":914,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":886,"start":802,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1076,"start":1000,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":717,"start":681,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":30}],"query_bed":[295,325],"query_length":30,"union_overlap_bases":30},"family":"stranded","fingerprint":"b7083c7a46de0d19a121f2431c864ed20d05b523ef3cccca7880c04e97b7e60a","group_id":"b7083c7a46de0d19a121f2431c864ed20d05b523ef3cccca7880c04e97b7e60a","id":"INTERVALS-0015788","index":15788,"input":{"contigs":{"synthetic_A":1400,"synthetic_B":870},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":325,"start":295,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":325,"start":295,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":689,"start":656,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":213,"start":112,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":118,"start":64,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":657,"start":633,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1074,"start":1054,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":420,"start":305,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1291,"start":1189,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":505,"start":427,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":325,"start":296,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":40},{"feature_index":2,"overlap_bases":2},{"feature_index":6,"overlap_bases":19},{"feature_index":7,"overlap_bases":5}],"query_bed":[70,111],"query_length":41,"union_overlap_bases":41},"family":"overlapping_blocks","fingerprint":"1f9caaba635a2910b19803ae8ff0445d666fc00c3bb18ad09930eadd753886ed","group_id":"1f9caaba635a2910b19803ae8ff0445d666fc00c3bb18ad09930eadd753886ed","id":"INTERVALS-0015792","index":15792,"input":{"contigs":{"synthetic_A":1475,"synthetic_B":875},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":73,"start":67,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":111,"start":71,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":114,"start":109,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":634,"start":631,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":682,"start":657,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1018,"start":916,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":210,"start":92,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":181,"start":107,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":52,"start":27,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":450,"start":427,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":255,"start":233,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":800,"start":725,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":111,"start":70,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":45}],"query_bed":[351,396],"query_length":45,"union_overlap_bases":45},"family":"coordinate_conversion","fingerprint":"f70b7d6ee447c960578377e7574b1d88f75d020d6b7aedf8e2cc6e68ce3de5fe","group_id":"f70b7d6ee447c960578377e7574b1d88f75d020d6b7aedf8e2cc6e68ce3de5fe","id":"INTERVALS-0015794","index":15794,"input":{"contigs":{"synthetic_A":1283,"synthetic_B":1499},"features":[{"basis":"one_closed","contig":"synthetic_B","end":396,"start":352,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":776,"start":714,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1091,"start":1007,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":327,"start":262,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1338,"start":1335,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1093,"start":1075,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1032,"start":929,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1376,"start":1335,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1482,"start":1379,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1062,"start":945,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":458,"start":369,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":396,"start":352,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[21,43],"query_length":22,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"7d9cff2aedc32b6a2e8c837bea67a927447f213a9245dd9926f38baae539abf7","group_id":"7d9cff2aedc32b6a2e8c837bea67a927447f213a9245dd9926f38baae539abf7","id":"INTERVALS-0015795","index":15795,"input":{"contigs":{"synthetic_A":1042,"synthetic_B":1697},"features":[{"basis":"one_closed","contig":"synthetic_A","end":21,"start":16,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":81,"start":44,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":721,"start":691,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1445,"start":1394,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":782,"start":695,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":43,"start":22,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73},{"feature_index":1,"overlap_bases":71}],"query_bed":[1181,1254],"query_length":73,"union_overlap_bases":73},"family":"nested","fingerprint":"88fb2f2c5da3764768d51c8d988b121353d80406e3603c10a5e89fa341fb09ff","group_id":"88fb2f2c5da3764768d51c8d988b121353d80406e3603c10a5e89fa341fb09ff","id":"INTERVALS-0015816","index":15816,"input":{"contigs":{"synthetic_A":1309,"synthetic_B":1623},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1259,"start":1176,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1253,"start":1182,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":88,"start":33,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":877,"start":864,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1167,"start":1066,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":48,"start":16,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":557,"start":440,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1026,"start":916,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":400,"start":353,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1076,"start":998,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1254,"start":1181,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":49}],"query_bed":[309,358],"query_length":49,"union_overlap_bases":49},"family":"coordinate_conversion","fingerprint":"c8fff2604d86993df82c6d63bf0b8f9892506a6af4be389497e7e8103bf45415","group_id":"c8fff2604d86993df82c6d63bf0b8f9892506a6af4be389497e7e8103bf45415","id":"INTERVALS-0015884","index":15884,"input":{"contigs":{"synthetic_A":1395,"synthetic_B":888},"features":[{"basis":"one_closed","contig":"synthetic_B","end":358,"start":310,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1106,"start":1079,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1131,"start":1077,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":981,"start":877,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":624,"start":511,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":358,"start":310,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":57},{"feature_index":2,"overlap_bases":2},{"feature_index":8,"overlap_bases":8}],"query_bed":[912,970],"query_length":58,"union_overlap_bases":58},"family":"overlapping_blocks","fingerprint":"fc9e666aca19a1e36629ad86db34062e9cc00f2afd62c51b0fbead48fca6d77c","group_id":"fc9e666aca19a1e36629ad86db34062e9cc00f2afd62c51b0fbead48fca6d77c","id":"INTERVALS-0015897","index":15897,"input":{"contigs":{"synthetic_A":1239,"synthetic_B":1395},"features":[{"basis":"one_closed","contig":"synthetic_B","end":915,"start":910,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":970,"start":914,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":973,"start":968,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":542,"start":463,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":815,"start":728,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":167,"start":102,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":842,"start":751,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":543,"start":526,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1012,"start":963,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":984,"start":971,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":506,"start":466,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1030,"start":1016,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":970,"start":913,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":79},{"feature_index":2,"overlap_bases":2},{"feature_index":7,"overlap_bases":53}],"query_bed":[44,124],"query_length":80,"union_overlap_bases":80},"family":"overlapping_blocks","fingerprint":"a5a3a370a4da371972ec26c34d4d64e2eeb1a0c134ae4cae6f91d1da459bff31","group_id":"a5a3a370a4da371972ec26c34d4d64e2eeb1a0c134ae4cae6f91d1da459bff31","id":"INTERVALS-0015902","index":15902,"input":{"contigs":{"synthetic_A":1452,"synthetic_B":1053},"features":[{"basis":"one_closed","contig":"synthetic_B","end":47,"start":42,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":124,"start":46,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":127,"start":122,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":687,"start":663,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":127,"start":84,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":954,"start":925,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":901,"start":782,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":127,"start":72,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":124,"start":45,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":59},{"feature_index":2,"overlap_bases":2},{"feature_index":5,"overlap_bases":13}],"query_bed":[132,192],"query_length":60,"union_overlap_bases":60},"family":"overlapping_blocks","fingerprint":"9377115ad7ee77e7706ba9d9894592eca21a4128a110aed2672d86b0891e0a2f","group_id":"9377115ad7ee77e7706ba9d9894592eca21a4128a110aed2672d86b0891e0a2f","id":"INTERVALS-0015907","index":15907,"input":{"contigs":{"synthetic_A":819,"synthetic_B":1160},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":135,"start":129,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":192,"start":134,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":195,"start":191,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":622,"start":534,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":792,"start":776,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":230,"start":179,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":192,"start":133,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":26}],"query_bed":[319,345],"query_length":26,"union_overlap_bases":26},"family":"stranded","fingerprint":"7b95a45cb191bb15755f1c86668176cb7e984e368e22cae96266443b583897b1","group_id":"7b95a45cb191bb15755f1c86668176cb7e984e368e22cae96266443b583897b1","id":"INTERVALS-0015918","index":15918,"input":{"contigs":{"synthetic_A":906,"synthetic_B":742},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":345,"start":319,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":345,"start":320,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":198,"start":110,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":123,"start":67,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":651,"start":634,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":454,"start":396,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":453,"start":349,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":258,"start":250,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":345,"start":320,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":39},{"feature_index":1,"overlap_bases":37}],"query_bed":[166,205],"query_length":39,"union_overlap_bases":39},"family":"nested","fingerprint":"4cf3b9b82c5ca94889d15b861b31f792093acd2cc3925f52b950f5a272a6b12f","group_id":"4cf3b9b82c5ca94889d15b861b31f792093acd2cc3925f52b950f5a272a6b12f","id":"INTERVALS-0015921","index":15921,"input":{"contigs":{"synthetic_A":1536,"synthetic_B":1232},"features":[{"basis":"one_closed","contig":"synthetic_B","end":210,"start":162,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":204,"start":167,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":358,"start":301,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":106,"start":48,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":822,"start":811,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1381,"start":1375,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":585,"start":585,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1025,"start":917,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1262,"start":1231,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":309,"start":216,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":205,"start":167,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":29},{"feature_index":2,"overlap_bases":2}],"query_bed":[879,909],"query_length":30,"union_overlap_bases":30},"family":"overlapping_blocks","fingerprint":"774785dcf577a17b5308ab9848a3b6e1b5c7dc4e5383bd215b90be6f16f5e2af","group_id":"774785dcf577a17b5308ab9848a3b6e1b5c7dc4e5383bd215b90be6f16f5e2af","id":"INTERVALS-0015932","index":15932,"input":{"contigs":{"synthetic_A":1161,"synthetic_B":1420},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":882,"start":876,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":909,"start":880,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":912,"start":907,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":137,"start":59,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1322,"start":1251,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":545,"start":527,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":717,"start":599,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":413,"start":407,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":909,"start":879,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":56},{"feature_index":2,"overlap_bases":2}],"query_bed":[1541,1598],"query_length":57,"union_overlap_bases":57},"family":"overlapping_blocks","fingerprint":"84420186c6dd2a87323fdeef9ab5e39d5acff3da6ec5f6794c42d425ebc5e5a8","group_id":"84420186c6dd2a87323fdeef9ab5e39d5acff3da6ec5f6794c42d425ebc5e5a8","id":"INTERVALS-0015937","index":15937,"input":{"contigs":{"synthetic_A":1331,"synthetic_B":1753},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1544,"start":1538,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1598,"start":1543,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1601,"start":1597,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1488,"start":1436,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1066,"start":965,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1045,"start":948,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1247,"start":1154,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":295,"start":184,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1312,"start":1275,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1598,"start":1542,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":77},{"feature_index":2,"overlap_bases":2},{"feature_index":3,"overlap_bases":78}],"query_bed":[496,574],"query_length":78,"union_overlap_bases":78},"family":"overlapping_blocks","fingerprint":"2cbc6c76cc6d6430ceaea73150ea1a21eec940eb424c2bb5a6bfa3d08064330a","group_id":"2cbc6c76cc6d6430ceaea73150ea1a21eec940eb424c2bb5a6bfa3d08064330a","id":"INTERVALS-0015957","index":15957,"input":{"contigs":{"synthetic_A":920,"synthetic_B":1635},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":499,"start":493,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":574,"start":497,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":577,"start":573,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":575,"start":464,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1519,"start":1471,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":824,"start":748,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":329,"start":276,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1279,"start":1200,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1336,"start":1335,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1026,"start":946,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":574,"start":497,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":31}],"query_bed":[442,473],"query_length":31,"union_overlap_bases":31},"family":"stranded","fingerprint":"c15c24e8d0c01612c47d57bc8e717785767fa28899e654d685da60cbd938fe3f","group_id":"c15c24e8d0c01612c47d57bc8e717785767fa28899e654d685da60cbd938fe3f","id":"INTERVALS-0015968","index":15968,"input":{"contigs":{"synthetic_A":1117,"synthetic_B":934},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":473,"start":442,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":473,"start":443,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":182,"start":138,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":403,"start":327,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":341,"start":231,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":796,"start":783,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":55,"start":7,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":473,"start":443,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[535,562],"query_length":27,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e47a25b000a712f58fbea2c87b296cfc1b042878637b79acd18cec5741b9f2f6","group_id":"e47a25b000a712f58fbea2c87b296cfc1b042878637b79acd18cec5741b9f2f6","id":"INTERVALS-0015975","index":15975,"input":{"contigs":{"synthetic_A":1457,"synthetic_B":1638},"features":[{"basis":"one_closed","contig":"synthetic_A","end":535,"start":520,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":590,"start":563,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1391,"start":1370,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":379,"start":352,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1247,"start":1131,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":999,"start":907,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":298,"start":264,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":970,"start":948,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":839,"start":827,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":562,"start":536,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[765,818],"query_length":53,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e8a4032c6a58d4789875dc0942273e7ceb15fa94b0a5bcde95a33f98d0ac6425","group_id":"e8a4032c6a58d4789875dc0942273e7ceb15fa94b0a5bcde95a33f98d0ac6425","id":"INTERVALS-0015985","index":15985,"input":{"contigs":{"synthetic_A":641,"synthetic_B":1721},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":765,"start":758,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":840,"start":818,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":228,"start":111,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1075,"start":1002,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":451,"start":353,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":250,"start":143,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":818,"start":765,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[653,665],"query_length":12,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"d694e368998b73b51407a33361741287e2287fab0470447c5308e22b6a63eaa1","group_id":"d694e368998b73b51407a33361741287e2287fab0470447c5308e22b6a63eaa1","id":"INTERVALS-0016005","index":16005,"input":{"contigs":{"synthetic_A":700,"synthetic_B":1500},"features":[{"basis":"one_closed","contig":"synthetic_B","end":653,"start":638,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":669,"start":665,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":406,"start":344,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1338,"start":1247,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1072,"start":984,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":591,"start":578,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":286,"start":283,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":242,"start":147,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":665,"start":654,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":17}],"query_bed":[701,718],"query_length":17,"union_overlap_bases":17},"family":"coordinate_conversion","fingerprint":"e5d213d2988e56e9daa4a160753e486eeb51774f205a7a2517c8558038391f07","group_id":"e5d213d2988e56e9daa4a160753e486eeb51774f205a7a2517c8558038391f07","id":"INTERVALS-0016009","index":16009,"input":{"contigs":{"synthetic_A":913,"synthetic_B":1459},"features":[{"basis":"one_closed","contig":"synthetic_B","end":718,"start":702,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":819,"start":706,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":437,"start":412,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":793,"start":781,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":422,"start":313,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1117,"start":1064,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":130,"start":98,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":194,"start":136,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":752,"start":723,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":718,"start":702,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56},{"feature_index":1,"overlap_bases":54},{"feature_index":2,"overlap_bases":17}],"query_bed":[1182,1238],"query_length":56,"union_overlap_bases":56},"family":"nested","fingerprint":"c315327a2cb2f18861aed5c31172dae6baa1c68218b30c4b83200de18d27861f","group_id":"c315327a2cb2f18861aed5c31172dae6baa1c68218b30c4b83200de18d27861f","id":"INTERVALS-0016011","index":16011,"input":{"contigs":{"synthetic_A":1783,"synthetic_B":1160},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1243,"start":1178,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1237,"start":1184,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1199,"start":1133,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1692,"start":1593,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":757,"start":704,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":488,"start":466,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1238,"start":1182,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":6,"overlap_bases":58}],"query_bed":[168,226],"query_length":58,"union_overlap_bases":58},"family":"touching_boundary","fingerprint":"8a19e45cffd0da5e0c1c2157aa7f44c7f92ba8718c0eb0e330cc01c45f671bc2","group_id":"8a19e45cffd0da5e0c1c2157aa7f44c7f92ba8718c0eb0e330cc01c45f671bc2","id":"INTERVALS-0016030","index":16030,"input":{"contigs":{"synthetic_A":1046,"synthetic_B":1200},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":168,"start":156,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":266,"start":227,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":205,"start":197,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":417,"start":337,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":254,"start":236,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":910,"start":831,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":260,"start":141,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":509,"start":455,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":226,"start":169,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":71}],"query_bed":[55,126],"query_length":71,"union_overlap_bases":71},"family":"coordinate_conversion","fingerprint":"80dba1a08be3c51af42ed47fd135809551946faf59b78ff5538ab8e75a842218","group_id":"80dba1a08be3c51af42ed47fd135809551946faf59b78ff5538ab8e75a842218","id":"INTERVALS-0016054","index":16054,"input":{"contigs":{"synthetic_A":1031,"synthetic_B":1549},"features":[{"basis":"one_closed","contig":"synthetic_A","end":126,"start":56,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":221,"start":214,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":201,"start":115,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":416,"start":308,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":976,"start":872,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":245,"start":142,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1131,"start":1027,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":126,"start":56,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[723,746],"query_length":23,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"382789a63c31b69626ae7a8f2d2ee9716b44a31da8ce64e3c3516e4d7a94160b","group_id":"382789a63c31b69626ae7a8f2d2ee9716b44a31da8ce64e3c3516e4d7a94160b","id":"INTERVALS-0016055","index":16055,"input":{"contigs":{"synthetic_A":991,"synthetic_B":961},"features":[{"basis":"one_closed","contig":"synthetic_A","end":723,"start":706,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":761,"start":747,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":203,"start":111,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":585,"start":525,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":818,"start":798,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":206,"start":105,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":746,"start":724,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18},{"feature_index":1,"overlap_bases":16}],"query_bed":[880,898],"query_length":18,"union_overlap_bases":18},"family":"nested","fingerprint":"855d7906167371b7ecfda3ffb3afddc9b8b553499572435f8758b5cb17b6ba34","group_id":"855d7906167371b7ecfda3ffb3afddc9b8b553499572435f8758b5cb17b6ba34","id":"INTERVALS-0016056","index":16056,"input":{"contigs":{"synthetic_A":1507,"synthetic_B":1117},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":903,"start":875,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":897,"start":882,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":582,"start":567,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":977,"start":887,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":719,"start":663,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1375,"start":1271,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":195,"start":100,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":654,"start":648,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":262,"start":202,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1389,"start":1362,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":707,"start":627,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":898,"start":880,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1390,1424],"query_length":34,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"6ec499048afa89c8295094def5a38adf320825764901ed061cef147ccc6eb58d","group_id":"6ec499048afa89c8295094def5a38adf320825764901ed061cef147ccc6eb58d","id":"INTERVALS-0016070","index":16070,"input":{"contigs":{"synthetic_A":1760,"synthetic_B":1481},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1390,"start":1373,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1459,"start":1425,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1445,"start":1362,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":292,"start":225,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":117,"start":44,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1424,"start":1390,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":58},{"feature_index":1,"overlap_bases":56}],"query_bed":[1142,1200],"query_length":58,"union_overlap_bases":58},"family":"nested","fingerprint":"85d193cc8ad67feefc4cf4956c089198abb86174f7ffa68122ecbc4f9854ee46","group_id":"85d193cc8ad67feefc4cf4956c089198abb86174f7ffa68122ecbc4f9854ee46","id":"INTERVALS-0016101","index":16101,"input":{"contigs":{"synthetic_A":1537,"synthetic_B":1715},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1205,"start":1137,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1199,"start":1143,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":753,"start":683,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":687,"start":627,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1144,"start":1083,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1466,"start":1363,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":957,"start":873,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1200,"start":1142,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":60},{"feature_index":2,"overlap_bases":2}],"query_bed":[842,903],"query_length":61,"union_overlap_bases":61},"family":"overlapping_blocks","fingerprint":"cf6a276a7aa5930845d533699000e4c6e7ce6069029f0e4b4bdfdd1503f38dbf","group_id":"cf6a276a7aa5930845d533699000e4c6e7ce6069029f0e4b4bdfdd1503f38dbf","id":"INTERVALS-0016107","index":16107,"input":{"contigs":{"synthetic_A":1336,"synthetic_B":827},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":845,"start":839,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":903,"start":843,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":906,"start":901,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1119,"start":1094,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":587,"start":505,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":122,"start":88,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":253,"start":239,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":737,"start":639,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":707,"start":622,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":903,"start":843,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":30}],"query_bed":[69,99],"query_length":30,"union_overlap_bases":30},"family":"coordinate_conversion","fingerprint":"a15e94f0c24f35cffa4b79510d1699138badc4d512cfb47ebf8cbb9de79b5ea6","group_id":"a15e94f0c24f35cffa4b79510d1699138badc4d512cfb47ebf8cbb9de79b5ea6","id":"INTERVALS-0016109","index":16109,"input":{"contigs":{"synthetic_A":862,"synthetic_B":1072},"features":[{"basis":"one_closed","contig":"synthetic_A","end":99,"start":70,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":345,"start":246,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":799,"start":724,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":635,"start":551,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":134,"start":117,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":228,"start":161,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":99,"start":70,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":20}],"query_bed":[243,263],"query_length":20,"union_overlap_bases":20},"family":"stranded","fingerprint":"a84e8d9c36e9fea661e1d4957656887dd288e18dc29792fa9b1bc63bbf69a53d","group_id":"a84e8d9c36e9fea661e1d4957656887dd288e18dc29792fa9b1bc63bbf69a53d","id":"INTERVALS-0016113","index":16113,"input":{"contigs":{"synthetic_A":1762,"synthetic_B":1098},"features":[{"basis":"one_closed","contig":"synthetic_B","end":263,"start":244,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":263,"start":243,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":107,"start":21,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":279,"start":264,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":207,"start":112,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":706,"start":655,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":263,"start":244,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32},{"feature_index":1,"overlap_bases":30}],"query_bed":[115,147],"query_length":32,"union_overlap_bases":32},"family":"nested","fingerprint":"baedf88e8080983c21c1c30e7a32af2406463e8fe105dee1f893091b6c7ae428","group_id":"baedf88e8080983c21c1c30e7a32af2406463e8fe105dee1f893091b6c7ae428","id":"INTERVALS-0016151","index":16151,"input":{"contigs":{"synthetic_A":1498,"synthetic_B":601},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":152,"start":110,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":146,"start":117,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1106,"start":1090,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":918,"start":835,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":524,"start":439,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":533,"start":426,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":398,"start":360,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":297,"start":225,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":147,"start":116,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":72},{"feature_index":1,"overlap_bases":10}],"query_bed":[434,506],"query_length":72,"union_overlap_bases":72},"family":"coordinate_conversion","fingerprint":"a2a8164cf1496bf7ed64687f1d8b871f95d5509fe0f787a573d312dfcc736ec7","group_id":"a2a8164cf1496bf7ed64687f1d8b871f95d5509fe0f787a573d312dfcc736ec7","id":"INTERVALS-0016174","index":16174,"input":{"contigs":{"synthetic_A":1160,"synthetic_B":1622},"features":[{"basis":"one_closed","contig":"synthetic_A","end":506,"start":435,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":605,"start":497,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":85,"start":40,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1205,"start":1161,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":456,"start":337,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":873,"start":770,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1106,"start":1024,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1305,"start":1288,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":454,"start":381,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1216,"start":1159,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":228,"start":171,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1164,"start":1089,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":506,"start":435,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":26}],"query_bed":[1472,1498],"query_length":26,"union_overlap_bases":26},"family":"stranded","fingerprint":"9e4a88a0b89d75da28c64aea5378ed6a40bba86ca37287977e540b959284ddbc","group_id":"9e4a88a0b89d75da28c64aea5378ed6a40bba86ca37287977e540b959284ddbc","id":"INTERVALS-0016203","index":16203,"input":{"contigs":{"synthetic_A":1710,"synthetic_B":1685},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1498,"start":1473,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1498,"start":1472,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1646,"start":1548,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":494,"start":390,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":327,"start":304,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":379,"start":359,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1498,"start":1472,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":15},{"feature_index":1,"overlap_bases":13}],"query_bed":[145,160],"query_length":15,"union_overlap_bases":15},"family":"nested","fingerprint":"a1c8a3cce59c5e69c246e22b65b7b4d38017d3e7a82279a5b7bf2a03cf7006a3","group_id":"a1c8a3cce59c5e69c246e22b65b7b4d38017d3e7a82279a5b7bf2a03cf7006a3","id":"INTERVALS-0016206","index":16206,"input":{"contigs":{"synthetic_A":1321,"synthetic_B":1015},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":165,"start":140,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":159,"start":146,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":504,"start":450,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":407,"start":338,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":576,"start":493,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":768,"start":702,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":160,"start":146,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":45}],"query_bed":[200,245],"query_length":45,"union_overlap_bases":45},"family":"stranded","fingerprint":"fc16c390aef721669d46635ecb69f50337d370b6beb8cb31312fad57d2ddc927","group_id":"fc16c390aef721669d46635ecb69f50337d370b6beb8cb31312fad57d2ddc927","id":"INTERVALS-0016208","index":16208,"input":{"contigs":{"synthetic_A":1511,"synthetic_B":699},"features":[{"basis":"one_closed","contig":"synthetic_A","end":245,"start":201,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":245,"start":201,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":529,"start":495,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":83,"start":72,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":627,"start":536,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":535,"start":449,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":320,"start":239,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":245,"start":200,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":75},{"feature_index":2,"overlap_bases":2}],"query_bed":[190,266],"query_length":76,"union_overlap_bases":76},"family":"overlapping_blocks","fingerprint":"f8970e3c05aca72f511d71084feb2a07af8791641c8082e60cd75a77e6051fe4","group_id":"f8970e3c05aca72f511d71084feb2a07af8791641c8082e60cd75a77e6051fe4","id":"INTERVALS-0016217","index":16217,"input":{"contigs":{"synthetic_A":1255,"synthetic_B":1782},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":193,"start":187,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":266,"start":191,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":269,"start":265,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":190,"start":152,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":496,"start":425,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1041,"start":990,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1208,"start":1088,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":940,"start":835,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":866,"start":770,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":514,"start":421,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":979,"start":960,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":266,"start":191,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":48}],"query_bed":[1069,1117],"query_length":48,"union_overlap_bases":48},"family":"stranded","fingerprint":"22f639d8c9e512646a76ed5a870c694a53317b13d15e016317c0df13f8913b88","group_id":"22f639d8c9e512646a76ed5a870c694a53317b13d15e016317c0df13f8913b88","id":"INTERVALS-0016228","index":16228,"input":{"contigs":{"synthetic_A":1014,"synthetic_B":1352},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1117,"start":1069,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1117,"start":1070,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":297,"start":207,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":782,"start":760,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":998,"start":954,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":203,"start":125,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1025,"start":962,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":133,"start":16,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":446,"start":333,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1340,"start":1227,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":429,"start":386,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1124,"start":1013,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1117,"start":1069,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":15},{"feature_index":2,"overlap_bases":2}],"query_bed":[356,372],"query_length":16,"union_overlap_bases":16},"family":"overlapping_blocks","fingerprint":"25e9100c830163e91311f61eb93e4783ab92d2b7be18b1d1b29483064a859d73","group_id":"25e9100c830163e91311f61eb93e4783ab92d2b7be18b1d1b29483064a859d73","id":"INTERVALS-0016247","index":16247,"input":{"contigs":{"synthetic_A":691,"synthetic_B":1624},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":359,"start":353,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":372,"start":357,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":375,"start":370,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":717,"start":628,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":293,"start":203,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":673,"start":641,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":372,"start":357,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":70},{"feature_index":2,"overlap_bases":2}],"query_bed":[227,298],"query_length":71,"union_overlap_bases":71},"family":"overlapping_blocks","fingerprint":"38a2f46090eedfe4bdf1a98ca10ab2ffa2e42719117685e3d555f27438d8bc9e","group_id":"38a2f46090eedfe4bdf1a98ca10ab2ffa2e42719117685e3d555f27438d8bc9e","id":"INTERVALS-0016262","index":16262,"input":{"contigs":{"synthetic_A":861,"synthetic_B":754},"features":[{"basis":"one_closed","contig":"synthetic_B","end":230,"start":225,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":298,"start":228,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":301,"start":296,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":165,"start":64,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":628,"start":528,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":298,"start":227,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":51},{"feature_index":7,"overlap_bases":3}],"query_bed":[1196,1247],"query_length":51,"union_overlap_bases":51},"family":"coordinate_conversion","fingerprint":"58e15b908a10a7b13a26a7730cac5d7a2ba67eba8af89790d67672bcbd42630f","group_id":"58e15b908a10a7b13a26a7730cac5d7a2ba67eba8af89790d67672bcbd42630f","id":"INTERVALS-0016264","index":16264,"input":{"contigs":{"synthetic_A":1610,"synthetic_B":898},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1247,"start":1197,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":267,"start":266,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1247,"start":1173,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":777,"start":689,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1355,"start":1337,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1006,"start":924,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":472,"start":453,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1216,"start":1214,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":688,"start":678,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":432,"start":431,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":125,"start":117,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1465,"start":1421,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1247,"start":1197,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":54}],"query_bed":[101,155],"query_length":54,"union_overlap_bases":54},"family":"stranded","fingerprint":"f684a7a8d9ac9c906fe55384e56a31e0e7ecfb1efc38fbfd21980c455bf49241","group_id":"f684a7a8d9ac9c906fe55384e56a31e0e7ecfb1efc38fbfd21980c455bf49241","id":"INTERVALS-0016273","index":16273,"input":{"contigs":{"synthetic_A":1221,"synthetic_B":1793},"features":[{"basis":"one_closed","contig":"synthetic_A","end":155,"start":102,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":155,"start":102,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":537,"start":513,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1201,"start":1083,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":833,"start":803,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":440,"start":332,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1578,"start":1490,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":205,"start":153,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":142,"start":25,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":353,"start":333,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":150,"start":137,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":155,"start":101,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73},{"feature_index":1,"overlap_bases":71}],"query_bed":[694,767],"query_length":73,"union_overlap_bases":73},"family":"nested","fingerprint":"41e480ca9cf144cf29faad11bc4c17e764abfff7a0bce72a245d2740f44438a9","group_id":"41e480ca9cf144cf29faad11bc4c17e764abfff7a0bce72a245d2740f44438a9","id":"INTERVALS-0016276","index":16276,"input":{"contigs":{"synthetic_A":1372,"synthetic_B":1688},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":772,"start":689,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":766,"start":696,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":341,"start":295,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1000,"start":993,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":955,"start":909,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":767,"start":695,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":67},{"feature_index":2,"overlap_bases":2}],"query_bed":[333,401],"query_length":68,"union_overlap_bases":68},"family":"overlapping_blocks","fingerprint":"02b2f90e5e6bd3989fed3675f6954bb79acb15b899388981cc4a5b8b85b8b2e5","group_id":"02b2f90e5e6bd3989fed3675f6954bb79acb15b899388981cc4a5b8b85b8b2e5","id":"INTERVALS-0016292","index":16292,"input":{"contigs":{"synthetic_A":705,"synthetic_B":1557},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":336,"start":330,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":401,"start":334,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":404,"start":400,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":212,"start":198,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":242,"start":156,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":401,"start":333,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":46},{"feature_index":2,"overlap_bases":2}],"query_bed":[540,587],"query_length":47,"union_overlap_bases":47},"family":"overlapping_blocks","fingerprint":"e6ac4200f08e221e122d2905fdcf402722dd3ad1830b1beff5f5682fe1d534bd","group_id":"e6ac4200f08e221e122d2905fdcf402722dd3ad1830b1beff5f5682fe1d534bd","id":"INTERVALS-0016297","index":16297,"input":{"contigs":{"synthetic_A":605,"synthetic_B":1047},"features":[{"basis":"one_closed","contig":"synthetic_B","end":543,"start":538,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":587,"start":542,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":590,"start":586,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":112,"start":96,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":72,"start":46,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":489,"start":476,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":258,"start":155,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":304,"start":216,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":587,"start":541,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":66}],"query_bed":[888,954],"query_length":66,"union_overlap_bases":66},"family":"stranded","fingerprint":"13ce7858268d416b9479784f4050281ad1c74f9fb16e967e0bd20531c4b43536","group_id":"13ce7858268d416b9479784f4050281ad1c74f9fb16e967e0bd20531c4b43536","id":"INTERVALS-0016303","index":16303,"input":{"contigs":{"synthetic_A":961,"synthetic_B":1119},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":954,"start":888,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":954,"start":888,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":841,"start":830,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":544,"start":486,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":145,"start":85,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":377,"start":364,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":458,"start":386,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":351,"start":265,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":736,"start":635,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":230,"start":155,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":922,"start":894,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":954,"start":888,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46}],"query_bed":[1298,1344],"query_length":46,"union_overlap_bases":46},"family":"stranded","fingerprint":"b9a4851a88b6136ef2d96b8680f87306418185b5c286e2217e790b6c8b6a9eab","group_id":"b9a4851a88b6136ef2d96b8680f87306418185b5c286e2217e790b6c8b6a9eab","id":"INTERVALS-0016328","index":16328,"input":{"contigs":{"synthetic_A":1373,"synthetic_B":1708},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1344,"start":1299,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1344,"start":1299,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1057,"start":950,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":991,"start":904,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":14,"start":11,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":74,"start":39,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1156,"start":1053,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":853,"start":762,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1344,"start":1299,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":7},{"feature_index":2,"overlap_bases":2}],"query_bed":[48,56],"query_length":8,"union_overlap_bases":8},"family":"overlapping_blocks","fingerprint":"e7be51ceec3eada1c0000ebd8df0801beeb2c8ba2cb16c871665c67cc866cb6b","group_id":"e7be51ceec3eada1c0000ebd8df0801beeb2c8ba2cb16c871665c67cc866cb6b","id":"INTERVALS-0016332","index":16332,"input":{"contigs":{"synthetic_A":1305,"synthetic_B":1601},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":51,"start":45,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":56,"start":50,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":59,"start":54,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":915,"start":864,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1203,"start":1167,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1166,"start":1068,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":748,"start":724,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":56,"start":48,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":50},{"feature_index":1,"overlap_bases":50},{"feature_index":3,"overlap_bases":21}],"query_bed":[109,159],"query_length":50,"union_overlap_bases":50},"family":"coordinate_conversion","fingerprint":"0ba06db27204a3624673495a117b62369a49fc3d065b35b41e217ea9c0f28829","group_id":"0ba06db27204a3624673495a117b62369a49fc3d065b35b41e217ea9c0f28829","id":"INTERVALS-0016334","index":16334,"input":{"contigs":{"synthetic_A":614,"synthetic_B":795},"features":[{"basis":"one_closed","contig":"synthetic_A","end":159,"start":110,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":180,"start":75,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":95,"start":81,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":187,"start":139,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":210,"start":172,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":390,"start":364,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":159,"start":110,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":40}],"query_bed":[1061,1101],"query_length":40,"union_overlap_bases":40},"family":"stranded","fingerprint":"f86ef7bcc99a15cefe23609355ee6669f3a32df1bc74d4ff38ba1a2e9a1958d2","group_id":"f86ef7bcc99a15cefe23609355ee6669f3a32df1bc74d4ff38ba1a2e9a1958d2","id":"INTERVALS-0016338","index":16338,"input":{"contigs":{"synthetic_A":1440,"synthetic_B":1665},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1101,"start":1061,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1101,"start":1062,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":498,"start":397,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":236,"start":177,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1139,"start":1068,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":175,"start":90,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":765,"start":765,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":325,"start":311,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":392,"start":287,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":929,"start":890,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":761,"start":740,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1148,"start":1060,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1101,"start":1062,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":28}],"query_bed":[591,619],"query_length":28,"union_overlap_bases":28},"family":"coordinate_conversion","fingerprint":"4002a37cb4ee75c471b89c8588b62c58d0f97522903a9aff67c2c2fcc8e8311c","group_id":"4002a37cb4ee75c471b89c8588b62c58d0f97522903a9aff67c2c2fcc8e8311c","id":"INTERVALS-0016339","index":16339,"input":{"contigs":{"synthetic_A":1189,"synthetic_B":1182},"features":[{"basis":"one_closed","contig":"synthetic_A","end":619,"start":592,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":670,"start":558,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":150,"start":83,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":783,"start":743,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":788,"start":730,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":756,"start":668,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":779,"start":692,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":930,"start":929,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":668,"start":585,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":757,"start":705,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":619,"start":592,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":60},{"feature_index":1,"overlap_bases":58},{"feature_index":6,"overlap_bases":25}],"query_bed":[501,561],"query_length":60,"union_overlap_bases":60},"family":"nested","fingerprint":"17b01350770363036d046cf273a12e58da774ad7aa852fc8e825f8f0dfbe28a5","group_id":"17b01350770363036d046cf273a12e58da774ad7aa852fc8e825f8f0dfbe28a5","id":"INTERVALS-0016341","index":16341,"input":{"contigs":{"synthetic_A":1118,"synthetic_B":966},"features":[{"basis":"one_closed","contig":"synthetic_A","end":566,"start":497,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":560,"start":502,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":261,"start":145,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":873,"start":758,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":249,"start":198,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":875,"start":812,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":563,"start":537,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":152,"start":134,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":302,"start":284,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":534,"start":475,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":561,"start":501,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":42},{"feature_index":2,"overlap_bases":2}],"query_bed":[284,327],"query_length":43,"union_overlap_bases":43},"family":"overlapping_blocks","fingerprint":"a3c047665e88e7aad256e43a1f59d351166d2160d1fadf08392d2c48dec05965","group_id":"a3c047665e88e7aad256e43a1f59d351166d2160d1fadf08392d2c48dec05965","id":"INTERVALS-0016342","index":16342,"input":{"contigs":{"synthetic_A":1565,"synthetic_B":1275},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":287,"start":281,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":327,"start":286,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":330,"start":325,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":421,"start":328,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":886,"start":779,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":997,"start":980,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":288,"start":205,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":150,"start":62,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1264,"start":1224,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":373,"start":368,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":804,"start":746,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1005,"start":961,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":327,"start":284,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":39},{"feature_index":2,"overlap_bases":2}],"query_bed":[550,590],"query_length":40,"union_overlap_bases":40},"family":"overlapping_blocks","fingerprint":"61a03904f970ee5b761aeea1de1f1b3862ba26d52b49c2d3b7a4d8809eb73f8d","group_id":"61a03904f970ee5b761aeea1de1f1b3862ba26d52b49c2d3b7a4d8809eb73f8d","id":"INTERVALS-0016347","index":16347,"input":{"contigs":{"synthetic_A":816,"synthetic_B":869},"features":[{"basis":"one_closed","contig":"synthetic_A","end":553,"start":548,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":590,"start":551,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":593,"start":589,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":713,"start":654,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":273,"start":163,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":653,"start":551,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":590,"start":550,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":8}],"query_bed":[211,219],"query_length":8,"union_overlap_bases":8},"family":"stranded","fingerprint":"a47f4012a6b3fee8b72442878eac7a01907aacb6a2037467db350fedc67ec95d","group_id":"a47f4012a6b3fee8b72442878eac7a01907aacb6a2037467db350fedc67ec95d","id":"INTERVALS-0016363","index":16363,"input":{"contigs":{"synthetic_A":1240,"synthetic_B":681},"features":[{"basis":"one_closed","contig":"synthetic_A","end":219,"start":212,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":219,"start":211,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":245,"start":220,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":481,"start":371,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1073,"start":986,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":192,"start":164,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":387,"start":295,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":956,"start":867,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":219,"start":211,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":67}],"query_bed":[501,568],"query_length":67,"union_overlap_bases":67},"family":"coordinate_conversion","fingerprint":"8e835b548d46a822e8f4d157872b0133ae7241b0f418bfd3b55fbfc6178f6f06","group_id":"8e835b548d46a822e8f4d157872b0133ae7241b0f418bfd3b55fbfc6178f6f06","id":"INTERVALS-0016399","index":16399,"input":{"contigs":{"synthetic_A":788,"synthetic_B":914},"features":[{"basis":"one_closed","contig":"synthetic_B","end":568,"start":502,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":294,"start":275,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":505,"start":504,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":705,"start":639,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":569,"start":533,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":301,"start":186,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":568,"start":502,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":13},{"feature_index":2,"overlap_bases":2}],"query_bed":[889,903],"query_length":14,"union_overlap_bases":14},"family":"overlapping_blocks","fingerprint":"aa3ea5744cc00cad4cfd105fb7277e41c06a616b1d387ce4fdb392830745c756","group_id":"aa3ea5744cc00cad4cfd105fb7277e41c06a616b1d387ce4fdb392830745c756","id":"INTERVALS-0016407","index":16407,"input":{"contigs":{"synthetic_A":1174,"synthetic_B":894},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":892,"start":886,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":903,"start":890,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":906,"start":901,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":393,"start":276,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":352,"start":314,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":547,"start":475,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":309,"start":243,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":126,"start":43,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":903,"start":890,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":14},{"feature_index":2,"overlap_bases":5}],"query_bed":[86,100],"query_length":14,"union_overlap_bases":14},"family":"coordinate_conversion","fingerprint":"218f552a660797d07971761977bec6cf02c49e12e6214f474333328a8a017c80","group_id":"218f552a660797d07971761977bec6cf02c49e12e6214f474333328a8a017c80","id":"INTERVALS-0016414","index":16414,"input":{"contigs":{"synthetic_A":1613,"synthetic_B":1098},"features":[{"basis":"one_closed","contig":"synthetic_B","end":100,"start":87,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":316,"start":316,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":93,"start":89,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":220,"start":212,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":576,"start":553,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":756,"start":737,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1408,"start":1353,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1525,"start":1415,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":565,"start":522,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":100,"start":87,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[197,204],"query_length":7,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"725825eae2841dcc3514280dc8c51f0271881650f70d2c9cea4a8d9eb57ffd23","group_id":"725825eae2841dcc3514280dc8c51f0271881650f70d2c9cea4a8d9eb57ffd23","id":"INTERVALS-0016415","index":16415,"input":{"contigs":{"synthetic_A":1178,"synthetic_B":1411},"features":[{"basis":"one_closed","contig":"synthetic_B","end":197,"start":178,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":233,"start":205,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":298,"start":285,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":91,"start":6,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":517,"start":414,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":167,"start":123,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":636,"start":538,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":55,"start":26,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":204,"start":198,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":52},{"feature_index":1,"overlap_bases":50}],"query_bed":[323,375],"query_length":52,"union_overlap_bases":52},"family":"nested","fingerprint":"113d891c125bd824d27178fd769bba8b6b9b661888a8b4d9739dcb3cbd4723fc","group_id":"113d891c125bd824d27178fd769bba8b6b9b661888a8b4d9739dcb3cbd4723fc","id":"INTERVALS-0016426","index":16426,"input":{"contigs":{"synthetic_A":1505,"synthetic_B":1120},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":380,"start":318,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":374,"start":325,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":553,"start":521,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":293,"start":279,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":980,"start":918,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":450,"start":395,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":492,"start":419,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":375,"start":323,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73},{"feature_index":10,"overlap_bases":48}],"query_bed":[696,769],"query_length":73,"union_overlap_bases":73},"family":"coordinate_conversion","fingerprint":"30e4ba2eb65bab9e8892af9774cae0a6105d1b7618ac3b81c332441e9b9a7a0a","group_id":"30e4ba2eb65bab9e8892af9774cae0a6105d1b7618ac3b81c332441e9b9a7a0a","id":"INTERVALS-0016434","index":16434,"input":{"contigs":{"synthetic_A":1060,"synthetic_B":983},"features":[{"basis":"one_closed","contig":"synthetic_B","end":769,"start":697,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":611,"start":564,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":437,"start":382,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":433,"start":371,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":372,"start":314,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":206,"start":140,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":922,"start":851,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":205,"start":194,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":142,"start":101,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":896,"start":895,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":744,"start":659,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":104,"start":10,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":769,"start":697,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[182,232],"query_length":50,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"5064e5ae6a02f3ba90d2d80bc8024d5a1fc7be3ad6e170bf5b5622e230cd1e70","group_id":"5064e5ae6a02f3ba90d2d80bc8024d5a1fc7be3ad6e170bf5b5622e230cd1e70","id":"INTERVALS-0016440","index":16440,"input":{"contigs":{"synthetic_A":626,"synthetic_B":1649},"features":[{"basis":"one_closed","contig":"synthetic_B","end":182,"start":165,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":246,"start":232,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":739,"start":642,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":340,"start":337,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":266,"start":164,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":232,"start":183,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":61}],"query_bed":[659,720],"query_length":61,"union_overlap_bases":61},"family":"coordinate_conversion","fingerprint":"5b8003565fe1a6e57945213a0913946975c9027618562810e7a7f706d605664a","group_id":"5b8003565fe1a6e57945213a0913946975c9027618562810e7a7f706d605664a","id":"INTERVALS-0016449","index":16449,"input":{"contigs":{"synthetic_A":1115,"synthetic_B":920},"features":[{"basis":"one_closed","contig":"synthetic_A","end":720,"start":660,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":870,"start":793,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":873,"start":836,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":514,"start":421,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":366,"start":306,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":720,"start":660,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":76},{"feature_index":1,"overlap_bases":74}],"query_bed":[469,545],"query_length":76,"union_overlap_bases":76},"family":"nested","fingerprint":"a603c52add7c86ecf5f20e6f7e37174c353db335cc9d44346f16bc497a58ea14","group_id":"a603c52add7c86ecf5f20e6f7e37174c353db335cc9d44346f16bc497a58ea14","id":"INTERVALS-0016461","index":16461,"input":{"contigs":{"synthetic_A":1555,"synthetic_B":934},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":550,"start":464,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":544,"start":470,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":758,"start":734,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":521,"start":484,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1225,"start":1200,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":834,"start":800,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":545,"start":470,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":66}],"query_bed":[906,972],"query_length":66,"union_overlap_bases":66},"family":"coordinate_conversion","fingerprint":"67a99caa6d6a14648eeebb8437a75f1b16a5fce833d497b8742f197e03916b44","group_id":"67a99caa6d6a14648eeebb8437a75f1b16a5fce833d497b8742f197e03916b44","id":"INTERVALS-0016489","index":16489,"input":{"contigs":{"synthetic_A":1223,"synthetic_B":1239},"features":[{"basis":"one_closed","contig":"synthetic_A","end":972,"start":907,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":442,"start":385,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":292,"start":271,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":335,"start":216,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":234,"start":151,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":69,"start":5,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":778,"start":704,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":832,"start":783,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":253,"start":240,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":973,"start":942,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":166,"start":61,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":972,"start":907,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":27},{"feature_index":2,"overlap_bases":2},{"feature_index":10,"overlap_bases":28}],"query_bed":[394,422],"query_length":28,"union_overlap_bases":28},"family":"overlapping_blocks","fingerprint":"3ef844c8c25ab65ff1e49224ba2b8c79b67be7e05a27b42319434f276ba5119f","group_id":"3ef844c8c25ab65ff1e49224ba2b8c79b67be7e05a27b42319434f276ba5119f","id":"INTERVALS-0016497","index":16497,"input":{"contigs":{"synthetic_A":1231,"synthetic_B":993},"features":[{"basis":"one_closed","contig":"synthetic_B","end":397,"start":392,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":422,"start":395,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":425,"start":420,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1210,"start":1092,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":958,"start":938,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":338,"start":228,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":67,"start":49,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":602,"start":537,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":822,"start":745,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":484,"start":371,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":424,"start":382,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":144,"start":63,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":422,"start":394,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":60},{"feature_index":5,"overlap_bases":60}],"query_bed":[285,345],"query_length":60,"union_overlap_bases":60},"family":"coordinate_conversion","fingerprint":"68f1f0c62995b004c696a964b0c6f389d833baf18aa8504133c658b507963933","group_id":"68f1f0c62995b004c696a964b0c6f389d833baf18aa8504133c658b507963933","id":"INTERVALS-0016529","index":16529,"input":{"contigs":{"synthetic_A":1113,"synthetic_B":735},"features":[{"basis":"one_closed","contig":"synthetic_B","end":345,"start":286,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":190,"start":104,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":279,"start":270,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":347,"start":238,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":628,"start":529,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":361,"start":267,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":539,"start":427,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":518,"start":400,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":345,"start":286,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":3,"overlap_bases":15}],"query_bed":[511,573],"query_length":62,"union_overlap_bases":15},"family":"touching_boundary","fingerprint":"57a9eeccfa3c4635700a1c2cc5f7a958080ece687490b46cba271e1ece005cfd","group_id":"57a9eeccfa3c4635700a1c2cc5f7a958080ece687490b46cba271e1ece005cfd","id":"INTERVALS-0016530","index":16530,"input":{"contigs":{"synthetic_A":1737,"synthetic_B":871},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":511,"start":510,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":590,"start":574,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":636,"start":617,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":573,"start":559,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":891,"start":775,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":146,"start":77,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":27,"start":7,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":417,"start":362,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":124,"start":40,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":735,"start":617,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":554,"start":470,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1530,"start":1428,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":573,"start":511,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":36},{"feature_index":1,"overlap_bases":34}],"query_bed":[1263,1299],"query_length":36,"union_overlap_bases":36},"family":"nested","fingerprint":"09483ff42c13c368675ef606e60c926cd760c7dd9b5d0b4a988f5affc61e6acb","group_id":"09483ff42c13c368675ef606e60c926cd760c7dd9b5d0b4a988f5affc61e6acb","id":"INTERVALS-0016541","index":16541,"input":{"contigs":{"synthetic_A":1770,"synthetic_B":1594},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1304,"start":1259,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1298,"start":1265,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1361,"start":1263,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":349,"start":329,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":98,"start":83,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1393,"start":1356,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1299,"start":1264,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":43},{"feature_index":2,"overlap_bases":43}],"query_bed":[427,470],"query_length":43,"union_overlap_bases":43},"family":"coordinate_conversion","fingerprint":"091c43d62465faf44dd20beb9652a3397a237ab45e94b1ffcbe479bed6e1b221","group_id":"091c43d62465faf44dd20beb9652a3397a237ab45e94b1ffcbe479bed6e1b221","id":"INTERVALS-0016559","index":16559,"input":{"contigs":{"synthetic_A":828,"synthetic_B":1512},"features":[{"basis":"one_closed","contig":"synthetic_B","end":470,"start":428,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":364,"start":276,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":473,"start":396,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1040,"start":962,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":385,"start":335,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":433,"start":339,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":578,"start":571,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1453,"start":1384,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":714,"start":701,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":470,"start":428,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":9},{"feature_index":2,"overlap_bases":2}],"query_bed":[1191,1201],"query_length":10,"union_overlap_bases":10},"family":"overlapping_blocks","fingerprint":"7a8fff8a1501ecf504e81fb708fa25c5dc78d5bae1a540c702aaa4beefa1e10f","group_id":"7a8fff8a1501ecf504e81fb708fa25c5dc78d5bae1a540c702aaa4beefa1e10f","id":"INTERVALS-0016562","index":16562,"input":{"contigs":{"synthetic_A":1599,"synthetic_B":1205},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1194,"start":1188,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1201,"start":1192,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1204,"start":1200,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":148,"start":118,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":240,"start":183,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":497,"start":486,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":801,"start":710,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1201,"start":1192,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":35}],"query_bed":[153,188],"query_length":35,"union_overlap_bases":35},"family":"coordinate_conversion","fingerprint":"29d0339e739e98819be6071979ad97258abf74e17e69588373d103cdaea7df12","group_id":"29d0339e739e98819be6071979ad97258abf74e17e69588373d103cdaea7df12","id":"INTERVALS-0016569","index":16569,"input":{"contigs":{"synthetic_A":1053,"synthetic_B":1487},"features":[{"basis":"one_closed","contig":"synthetic_B","end":188,"start":154,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":669,"start":593,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":212,"start":196,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":642,"start":612,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":474,"start":360,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":837,"start":808,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":878,"start":876,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":188,"start":154,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":25},{"feature_index":2,"overlap_bases":2},{"feature_index":6,"overlap_bases":8}],"query_bed":[475,501],"query_length":26,"union_overlap_bases":26},"family":"overlapping_blocks","fingerprint":"e29beb523036d75443444234ceec122d469e42978b65f00825165703a42b6030","group_id":"e29beb523036d75443444234ceec122d469e42978b65f00825165703a42b6030","id":"INTERVALS-0016572","index":16572,"input":{"contigs":{"synthetic_A":1517,"synthetic_B":796},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":478,"start":472,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":501,"start":476,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":504,"start":499,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":795,"start":773,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":175,"start":165,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":36,"start":30,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":592,"start":493,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":319,"start":277,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":501,"start":475,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":51},{"feature_index":2,"overlap_bases":2}],"query_bed":[878,930],"query_length":52,"union_overlap_bases":52},"family":"overlapping_blocks","fingerprint":"b2a901dc12e1d86e2e4bbfcd66f165bc6c0d193dd83d78db08952a19c54a06de","group_id":"b2a901dc12e1d86e2e4bbfcd66f165bc6c0d193dd83d78db08952a19c54a06de","id":"INTERVALS-0016587","index":16587,"input":{"contigs":{"synthetic_A":1349,"synthetic_B":1125},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":881,"start":875,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":930,"start":879,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":933,"start":928,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1014,"start":995,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":996,"start":980,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":813,"start":694,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":566,"start":546,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":750,"start":749,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":661,"start":585,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":207,"start":191,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":930,"start":878,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":62},{"feature_index":4,"overlap_bases":22},{"feature_index":5,"overlap_bases":20}],"query_bed":[87,149],"query_length":62,"union_overlap_bases":62},"family":"coordinate_conversion","fingerprint":"276c5db258035f41ac2cf8b230c07aa1daf2e0ceb72d9be4c88e04c2261834c4","group_id":"276c5db258035f41ac2cf8b230c07aa1daf2e0ceb72d9be4c88e04c2261834c4","id":"INTERVALS-0016594","index":16594,"input":{"contigs":{"synthetic_A":1329,"synthetic_B":730},"features":[{"basis":"one_closed","contig":"synthetic_B","end":149,"start":88,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":334,"start":324,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":580,"start":465,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1079,"start":1020,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":144,"start":123,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":113,"start":94,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":67,"start":63,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":536,"start":450,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":565,"start":490,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":228,"start":196,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":149,"start":88,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":72}],"query_bed":[615,687],"query_length":72,"union_overlap_bases":72},"family":"coordinate_conversion","fingerprint":"99abcd7ce873dc5867f2a42753449669344c020eb132532f80e9da1eaf253ae2","group_id":"99abcd7ce873dc5867f2a42753449669344c020eb132532f80e9da1eaf253ae2","id":"INTERVALS-0016604","index":16604,"input":{"contigs":{"synthetic_A":1305,"synthetic_B":868},"features":[{"basis":"one_closed","contig":"synthetic_B","end":687,"start":616,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":583,"start":547,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":433,"start":395,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":580,"start":572,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":330,"start":276,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":567,"start":479,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":687,"start":616,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":34},{"feature_index":7,"overlap_bases":34}],"query_bed":[102,136],"query_length":34,"union_overlap_bases":34},"family":"coordinate_conversion","fingerprint":"1b4d66984014b2a142733c4ac4e148009a0b70b6018df8563f81f33a0038aee8","group_id":"1b4d66984014b2a142733c4ac4e148009a0b70b6018df8563f81f33a0038aee8","id":"INTERVALS-0016619","index":16619,"input":{"contigs":{"synthetic_A":714,"synthetic_B":1792},"features":[{"basis":"one_closed","contig":"synthetic_B","end":136,"start":103,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1674,"start":1642,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1395,"start":1326,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":609,"start":587,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1599,"start":1532,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":393,"start":351,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":541,"start":456,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":151,"start":95,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":531,"start":528,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":136,"start":103,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[245,299],"query_length":54,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e5453be2348f32f59eab104146c18b7c16ad496fe2e3e4ba0e1d61e7d77c2327","group_id":"e5453be2348f32f59eab104146c18b7c16ad496fe2e3e4ba0e1d61e7d77c2327","id":"INTERVALS-0016620","index":16620,"input":{"contigs":{"synthetic_A":866,"synthetic_B":1144},"features":[{"basis":"one_closed","contig":"synthetic_B","end":245,"start":230,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":321,"start":299,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":371,"start":319,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":226,"start":217,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":497,"start":387,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1001,"start":926,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":669,"start":586,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":731,"start":731,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":299,"start":245,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32},{"feature_index":1,"overlap_bases":30}],"query_bed":[1279,1311],"query_length":32,"union_overlap_bases":32},"family":"nested","fingerprint":"738cf67ac8d1e2fadf76865bdc7cc2859a5142a710b868ba79fa0602590aea76","group_id":"738cf67ac8d1e2fadf76865bdc7cc2859a5142a710b868ba79fa0602590aea76","id":"INTERVALS-0016621","index":16621,"input":{"contigs":{"synthetic_A":1628,"synthetic_B":740},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1316,"start":1274,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1310,"start":1280,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":393,"start":336,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":257,"start":155,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":311,"start":213,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":531,"start":517,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":638,"start":598,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":184,"start":96,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1107,"start":1063,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":142,"start":24,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":87,"start":9,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":419,"start":379,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1311,"start":1279,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73}],"query_bed":[52,125],"query_length":73,"union_overlap_bases":73},"family":"coordinate_conversion","fingerprint":"b13be54e9cb3d2cfa27b9aae26eb076e4bbff22573508ea5dcf350c24fbd7c60","group_id":"b13be54e9cb3d2cfa27b9aae26eb076e4bbff22573508ea5dcf350c24fbd7c60","id":"INTERVALS-0016649","index":16649,"input":{"contigs":{"synthetic_A":977,"synthetic_B":1771},"features":[{"basis":"one_closed","contig":"synthetic_A","end":125,"start":53,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":172,"start":165,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":372,"start":314,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":520,"start":504,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":657,"start":613,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":720,"start":693,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":99,"start":91,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":971,"start":858,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":770,"start":715,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":184,"start":132,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":125,"start":53,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":28},{"feature_index":1,"overlap_bases":26}],"query_bed":[329,357],"query_length":28,"union_overlap_bases":28},"family":"nested","fingerprint":"036fec3083705f8a8ae24d11ef75ba85dd813cb374a1a45826435ae79567c787","group_id":"036fec3083705f8a8ae24d11ef75ba85dd813cb374a1a45826435ae79567c787","id":"INTERVALS-0016656","index":16656,"input":{"contigs":{"synthetic_A":963,"synthetic_B":1261},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":362,"start":324,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":356,"start":331,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":303,"start":289,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":515,"start":403,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":985,"start":980,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1017,"start":915,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":459,"start":455,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":98,"start":85,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":54,"start":49,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1132,"start":1085,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":249,"start":160,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":357,"start":330,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":25},{"feature_index":4,"overlap_bases":2}],"query_bed":[513,538],"query_length":25,"union_overlap_bases":25},"family":"coordinate_conversion","fingerprint":"7a9693f489daa3854ee2e2febbe2aad93b034c7d6d0863e04cbf01d7031fb05f","group_id":"7a9693f489daa3854ee2e2febbe2aad93b034c7d6d0863e04cbf01d7031fb05f","id":"INTERVALS-0016669","index":16669,"input":{"contigs":{"synthetic_A":1326,"synthetic_B":1030},"features":[{"basis":"one_closed","contig":"synthetic_A","end":538,"start":514,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":986,"start":938,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":471,"start":401,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":422,"start":361,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":515,"start":511,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":970,"start":920,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":707,"start":651,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":471,"start":447,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":538,"start":514,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[299,319],"query_length":20,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"93a686425c1d041725748a6b1ef228bf8c2e3e1c454c44596cd7d6b114cacb81","group_id":"93a686425c1d041725748a6b1ef228bf8c2e3e1c454c44596cd7d6b114cacb81","id":"INTERVALS-0016670","index":16670,"input":{"contigs":{"synthetic_A":790,"synthetic_B":777},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":299,"start":285,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":351,"start":320,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":689,"start":593,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":277,"start":164,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":493,"start":458,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":110,"start":73,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":434,"start":380,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":407,"start":393,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":604,"start":581,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":530,"start":461,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":319,"start":299,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":64}],"query_bed":[1339,1403],"query_length":64,"union_overlap_bases":64},"family":"coordinate_conversion","fingerprint":"eaed51e2743c90967ea7f36e68555b2c931aa7f6f0d0c5ee25f66953e63a5b32","group_id":"eaed51e2743c90967ea7f36e68555b2c931aa7f6f0d0c5ee25f66953e63a5b32","id":"INTERVALS-0016694","index":16694,"input":{"contigs":{"synthetic_A":657,"synthetic_B":1669},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1403,"start":1340,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1310,"start":1229,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":78,"start":66,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":787,"start":718,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":404,"start":317,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":168,"start":155,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":392,"start":359,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1403,"start":1340,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1136,1145],"query_length":9,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"8c3deef4dad8f4bc10d5c17421e2b9286e4d323de64932efa3f8b6c915b080f8","group_id":"8c3deef4dad8f4bc10d5c17421e2b9286e4d323de64932efa3f8b6c915b080f8","id":"INTERVALS-0016695","index":16695,"input":{"contigs":{"synthetic_A":1057,"synthetic_B":1526},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1136,"start":1127,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1148,"start":1145,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":837,"start":763,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":616,"start":594,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":421,"start":388,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":80,"start":18,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":115,"start":90,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1108,"start":1074,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":157,"start":60,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1145,"start":1136,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":5,"overlap_bases":24}],"query_bed":[447,471],"query_length":24,"union_overlap_bases":24},"family":"touching_boundary","fingerprint":"8a6631ae757cf36326856a7cce3c59c57e4f4b9c2b1e04bd52a16af57a904233","group_id":"8a6631ae757cf36326856a7cce3c59c57e4f4b9c2b1e04bd52a16af57a904233","id":"INTERVALS-0016720","index":16720,"input":{"contigs":{"synthetic_A":1758,"synthetic_B":1028},"features":[{"basis":"one_closed","contig":"synthetic_B","end":447,"start":428,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":510,"start":472,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":174,"start":111,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":963,"start":873,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":770,"start":690,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":542,"start":433,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1086,"start":1069,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":249,"start":234,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":576,"start":563,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":471,"start":448,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":79},{"feature_index":1,"overlap_bases":77}],"query_bed":[714,793],"query_length":79,"union_overlap_bases":79},"family":"nested","fingerprint":"3ffe1f1458fe68966ba7b6053e1a27fb9547f243fae2024c3c6d69e2bb1c7b5c","group_id":"3ffe1f1458fe68966ba7b6053e1a27fb9547f243fae2024c3c6d69e2bb1c7b5c","id":"INTERVALS-0016741","index":16741,"input":{"contigs":{"synthetic_A":705,"synthetic_B":1421},"features":[{"basis":"one_closed","contig":"synthetic_B","end":798,"start":710,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":792,"start":716,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":97,"start":11,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":118,"start":39,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":700,"start":620,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":640,"start":610,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":578,"start":562,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":471,"start":377,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":487,"start":459,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":366,"start":312,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1003,"start":940,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":793,"start":715,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[343,408],"query_length":65,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"6e4735900f5b82ccae730a0196d7325f5d13f6f9f14d443a3bd827ec272be45f","group_id":"6e4735900f5b82ccae730a0196d7325f5d13f6f9f14d443a3bd827ec272be45f","id":"INTERVALS-0016745","index":16745,"input":{"contigs":{"synthetic_A":601,"synthetic_B":1457},"features":[{"basis":"one_closed","contig":"synthetic_A","end":343,"start":336,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":427,"start":408,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1274,"start":1271,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":154,"start":56,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":774,"start":710,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":287,"start":243,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":337,"start":218,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":408,"start":344,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":27},{"feature_index":1,"overlap_bases":25},{"feature_index":2,"overlap_bases":8}],"query_bed":[61,88],"query_length":27,"union_overlap_bases":27},"family":"nested","fingerprint":"bd117ec4bd89503bf03387fa804bfba60ca5bc6c1d8acfb8f5998cd7722a5da2","group_id":"bd117ec4bd89503bf03387fa804bfba60ca5bc6c1d8acfb8f5998cd7722a5da2","id":"INTERVALS-0016746","index":16746,"input":{"contigs":{"synthetic_A":1739,"synthetic_B":691},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":93,"start":56,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":87,"start":63,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":89,"start":80,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":275,"start":198,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1311,"start":1285,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":445,"start":370,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":545,"start":508,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1300,"start":1288,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":571,"start":545,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1147,"start":1032,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":88,"start":62,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":36}],"query_bed":[506,542],"query_length":36,"union_overlap_bases":36},"family":"coordinate_conversion","fingerprint":"a39d66a61d1987afa76c77242057dc78464f0971068e7cc5f07622098b9b393a","group_id":"a39d66a61d1987afa76c77242057dc78464f0971068e7cc5f07622098b9b393a","id":"INTERVALS-0016764","index":16764,"input":{"contigs":{"synthetic_A":1569,"synthetic_B":1607},"features":[{"basis":"one_closed","contig":"synthetic_A","end":542,"start":507,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":955,"start":880,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1019,"start":1000,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1265,"start":1215,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":274,"start":216,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":178,"start":97,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":828,"start":778,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":525,"start":441,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":542,"start":507,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":28},{"feature_index":3,"overlap_bases":10}],"query_bed":[55,83],"query_length":28,"union_overlap_bases":28},"family":"coordinate_conversion","fingerprint":"60e27b6cb8c1fc3390a9307244a3a8ac2c07ed33e9afb3e53c77c5fcf548c235","group_id":"60e27b6cb8c1fc3390a9307244a3a8ac2c07ed33e9afb3e53c77c5fcf548c235","id":"INTERVALS-0016769","index":16769,"input":{"contigs":{"synthetic_A":1523,"synthetic_B":1132},"features":[{"basis":"one_closed","contig":"synthetic_A","end":83,"start":56,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":356,"start":328,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":996,"start":931,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":65,"start":11,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":301,"start":230,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":83,"start":56,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[752,819],"query_length":67,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"806eb7b6200aa3e604596645626048d212e28e667d00a0a5297c5c9a529c1b69","group_id":"806eb7b6200aa3e604596645626048d212e28e667d00a0a5297c5c9a529c1b69","id":"INTERVALS-0016775","index":16775,"input":{"contigs":{"synthetic_A":626,"synthetic_B":1729},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":752,"start":738,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":826,"start":820,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1101,"start":987,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":317,"start":290,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":542,"start":459,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":81,"start":14,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":470,"start":445,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":258,"start":185,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":151,"start":140,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":819,"start":752,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":72},{"feature_index":1,"overlap_bases":70}],"query_bed":[149,221],"query_length":72,"union_overlap_bases":72},"family":"nested","fingerprint":"13faf87e0a5353f570ffd8c816dd069d4af82d93e29dc73dd20d30a0e65d786e","group_id":"13faf87e0a5353f570ffd8c816dd069d4af82d93e29dc73dd20d30a0e65d786e","id":"INTERVALS-0016776","index":16776,"input":{"contigs":{"synthetic_A":1550,"synthetic_B":1608},"features":[{"basis":"one_closed","contig":"synthetic_B","end":226,"start":145,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":220,"start":151,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":68,"start":4,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1232,"start":1225,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1483,"start":1429,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":428,"start":395,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1455,"start":1341,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":485,"start":465,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":221,"start":150,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":7},{"feature_index":5,"overlap_bases":7}],"query_bed":[304,311],"query_length":7,"union_overlap_bases":7},"family":"stranded","fingerprint":"c884c17631734a55e232a410ac38057820173619cd9cfc2a05d905e338bfa15a","group_id":"c884c17631734a55e232a410ac38057820173619cd9cfc2a05d905e338bfa15a","id":"INTERVALS-0016783","index":16783,"input":{"contigs":{"synthetic_A":1525,"synthetic_B":946},"features":[{"basis":"one_closed","contig":"synthetic_B","end":311,"start":305,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":311,"start":304,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":907,"start":805,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":227,"start":203,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":151,"start":147,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":335,"start":272,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":796,"start":774,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":607,"start":601,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":539,"start":513,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":643,"start":633,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":311,"start":305,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32}],"query_bed":[787,819],"query_length":32,"union_overlap_bases":32},"family":"stranded","fingerprint":"3f2c5d804a5c8dc3a5d1ba654e2e271bc50fdaff5d9442f9a276f6a990543a1f","group_id":"3f2c5d804a5c8dc3a5d1ba654e2e271bc50fdaff5d9442f9a276f6a990543a1f","id":"INTERVALS-0016788","index":16788,"input":{"contigs":{"synthetic_A":1267,"synthetic_B":1499},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":819,"start":787,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":819,"start":788,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":293,"start":264,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":153,"start":41,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":961,"start":918,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1045,"start":935,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":110,"start":44,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":321,"start":271,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1007,"start":975,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":881,"start":781,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":482,"start":386,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":819,"start":788,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":76},{"feature_index":6,"overlap_bases":22}],"query_bed":[1312,1388],"query_length":76,"union_overlap_bases":76},"family":"coordinate_conversion","fingerprint":"42eb04621cf94c26a4e4a220be0792a30c0f05c8156bef2645a377e802e64311","group_id":"42eb04621cf94c26a4e4a220be0792a30c0f05c8156bef2645a377e802e64311","id":"INTERVALS-0016809","index":16809,"input":{"contigs":{"synthetic_A":1626,"synthetic_B":830},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1388,"start":1313,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":400,"start":327,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":750,"start":749,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":160,"start":144,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":209,"start":191,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":916,"start":896,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1334,"start":1232,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1555,"start":1469,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":520,"start":517,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":741,"start":724,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":757,"start":657,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":223,"start":129,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1388,"start":1313,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":40},{"feature_index":6,"overlap_bases":32}],"query_bed":[1070,1110],"query_length":40,"union_overlap_bases":40},"family":"stranded","fingerprint":"5f645fdaff028575a53c4fc04fe4357a33de2ef9b1075725add4009a0966b527","group_id":"5f645fdaff028575a53c4fc04fe4357a33de2ef9b1075725add4009a0966b527","id":"INTERVALS-0016828","index":16828,"input":{"contigs":{"synthetic_A":790,"synthetic_B":1553},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1110,"start":1071,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1110,"start":1071,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":140,"start":126,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":384,"start":319,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":769,"start":717,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":618,"start":546,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1195,"start":1079,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":488,"start":471,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1144,"start":1136,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1110,"start":1071,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[335,373],"query_length":38,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e5cf53e0f53070292e571ba24b772159a8d2833573a686d98a4e4a76e3aa89e8","group_id":"e5cf53e0f53070292e571ba24b772159a8d2833573a686d98a4e4a76e3aa89e8","id":"INTERVALS-0016840","index":16840,"input":{"contigs":{"synthetic_A":1672,"synthetic_B":1726},"features":[{"basis":"one_closed","contig":"synthetic_B","end":335,"start":330,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":402,"start":373,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1044,"start":1033,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":480,"start":396,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1519,"start":1415,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":373,"start":335,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":35},{"feature_index":2,"overlap_bases":2}],"query_bed":[683,719],"query_length":36,"union_overlap_bases":36},"family":"overlapping_blocks","fingerprint":"5243c78c5d08c22ea1f7e7c65d941412ebb092551cc6543f10aae87dc8a86e59","group_id":"5243c78c5d08c22ea1f7e7c65d941412ebb092551cc6543f10aae87dc8a86e59","id":"INTERVALS-0016842","index":16842,"input":{"contigs":{"synthetic_A":1647,"synthetic_B":911},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":686,"start":680,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":719,"start":685,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":722,"start":717,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":220,"start":142,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":814,"start":714,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":475,"start":423,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":945,"start":856,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":754,"start":660,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":498,"start":413,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":66,"start":19,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":144,"start":39,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":99,"start":51,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":719,"start":683,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":63},{"feature_index":2,"overlap_bases":2}],"query_bed":[1313,1377],"query_length":64,"union_overlap_bases":64},"family":"overlapping_blocks","fingerprint":"1e8a3c962765d2984071b2f3aad08ebf49772479d0d42e92348945711dc8725e","group_id":"1e8a3c962765d2984071b2f3aad08ebf49772479d0d42e92348945711dc8725e","id":"INTERVALS-0016847","index":16847,"input":{"contigs":{"synthetic_A":1748,"synthetic_B":1288},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1316,"start":1311,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1377,"start":1314,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1380,"start":1375,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1142,"start":1064,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1660,"start":1627,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":383,"start":375,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1377,"start":1313,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":54},{"feature_index":1,"overlap_bases":52}],"query_bed":[1342,1396],"query_length":54,"union_overlap_bases":54},"family":"nested","fingerprint":"e7be1844c823d2f015e7e442e018d8b1d6eb31211c6a0a557e76657944804991","group_id":"e7be1844c823d2f015e7e442e018d8b1d6eb31211c6a0a557e76657944804991","id":"INTERVALS-0016856","index":16856,"input":{"contigs":{"synthetic_A":1023,"synthetic_B":1548},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1401,"start":1338,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1395,"start":1343,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":498,"start":411,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":808,"start":805,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1124,"start":1060,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1311,"start":1255,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":573,"start":548,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":795,"start":771,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":358,"start":336,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1396,"start":1342,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":4},{"feature_index":2,"overlap_bases":2}],"query_bed":[132,137],"query_length":5,"union_overlap_bases":5},"family":"overlapping_blocks","fingerprint":"0d64a10e48e14d35259ce37a502699cda07691a5ab67a18e16031974c6d3a9d0","group_id":"0d64a10e48e14d35259ce37a502699cda07691a5ab67a18e16031974c6d3a9d0","id":"INTERVALS-0016857","index":16857,"input":{"contigs":{"synthetic_A":1015,"synthetic_B":1166},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":135,"start":129,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":137,"start":133,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":140,"start":135,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":592,"start":549,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":96,"start":25,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":258,"start":239,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":590,"start":540,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":581,"start":514,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":814,"start":708,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":137,"start":133,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":41},{"feature_index":2,"overlap_bases":2}],"query_bed":[410,452],"query_length":42,"union_overlap_bases":42},"family":"overlapping_blocks","fingerprint":"c5526ba298376eff67ce3d6c6fa7ed07f7a3eecc3c2319727e32a444ee116b08","group_id":"c5526ba298376eff67ce3d6c6fa7ed07f7a3eecc3c2319727e32a444ee116b08","id":"INTERVALS-0016872","index":16872,"input":{"contigs":{"synthetic_A":985,"synthetic_B":868},"features":[{"basis":"one_closed","contig":"synthetic_B","end":413,"start":408,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":452,"start":412,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":455,"start":450,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":255,"start":167,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":652,"start":539,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":452,"start":410,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1022,1066],"query_length":44,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"16c525164c2d7ac134a10d211da487394afca7b921d871b725c1a7ceecb1d85a","group_id":"16c525164c2d7ac134a10d211da487394afca7b921d871b725c1a7ceecb1d85a","id":"INTERVALS-0016875","index":16875,"input":{"contigs":{"synthetic_A":1414,"synthetic_B":1277},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1022,"start":1003,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1072,"start":1067,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":166,"start":162,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1016,"start":973,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1335,"start":1263,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":273,"start":179,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":849,"start":821,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":285,"start":197,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":403,"start":356,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1066,"start":1023,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[844,920],"query_length":76,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"df9e165a954235b383930ba32dbd47c3d2c4a8ed437b430163d64b2a5bc64fd5","group_id":"df9e165a954235b383930ba32dbd47c3d2c4a8ed437b430163d64b2a5bc64fd5","id":"INTERVALS-0016900","index":16900,"input":{"contigs":{"synthetic_A":1169,"synthetic_B":1296},"features":[{"basis":"one_closed","contig":"synthetic_B","end":844,"start":830,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":936,"start":921,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":679,"start":570,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":80,"start":73,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":425,"start":387,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":920,"start":845,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[635,659],"query_length":24,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"6c032398bfbf0c15191794b70baf486e1966054d96f09274b445f6ca4bb34357","group_id":"6c032398bfbf0c15191794b70baf486e1966054d96f09274b445f6ca4bb34357","id":"INTERVALS-0016905","index":16905,"input":{"contigs":{"synthetic_A":843,"synthetic_B":1216},"features":[{"basis":"one_closed","contig":"synthetic_A","end":635,"start":623,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":679,"start":659,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":423,"start":392,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":657,"start":632,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":425,"start":404,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":482,"start":377,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":403,"start":388,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":630,"start":541,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":659,"start":636,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":45},{"feature_index":1,"overlap_bases":43},{"feature_index":2,"overlap_bases":34}],"query_bed":[641,686],"query_length":45,"union_overlap_bases":45},"family":"nested","fingerprint":"36c31d784115960c358bdca14e958233a405704f09afc1cfcac62ab333f39bb3","group_id":"36c31d784115960c358bdca14e958233a405704f09afc1cfcac62ab333f39bb3","id":"INTERVALS-0016911","index":16911,"input":{"contigs":{"synthetic_A":1318,"synthetic_B":989},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":691,"start":636,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":685,"start":643,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":675,"start":557,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":526,"start":446,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":32,"start":24,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":79,"start":38,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1042,"start":960,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":882,"start":828,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":686,"start":641,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":28}],"query_bed":[475,503],"query_length":28,"union_overlap_bases":28},"family":"stranded","fingerprint":"8ba09f28cd7c344e031ad65a5e7bd34eb42f0d3bb4e8fa8b9299cfb1b4b5e77f","group_id":"8ba09f28cd7c344e031ad65a5e7bd34eb42f0d3bb4e8fa8b9299cfb1b4b5e77f","id":"INTERVALS-0016918","index":16918,"input":{"contigs":{"synthetic_A":904,"synthetic_B":922},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":503,"start":475,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":503,"start":476,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":847,"start":793,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":230,"start":112,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":113,"start":93,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":546,"start":525,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":347,"start":256,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":323,"start":251,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":799,"start":681,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":503,"start":475,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":2,"overlap_bases":23}],"query_bed":[375,398],"query_length":23,"union_overlap_bases":23},"family":"touching_boundary","fingerprint":"e57b412e5d19ff06a2342a376e495ded3cedf2a51bbf4e4b8d1a8d006254395a","group_id":"e57b412e5d19ff06a2342a376e495ded3cedf2a51bbf4e4b8d1a8d006254395a","id":"INTERVALS-0016935","index":16935,"input":{"contigs":{"synthetic_A":740,"synthetic_B":1565},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":375,"start":356,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":417,"start":399,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":401,"start":357,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":80,"start":14,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":237,"start":197,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1024,"start":981,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1135,"start":1133,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":147,"start":41,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":264,"start":234,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":398,"start":375,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":16},{"feature_index":5,"overlap_bases":16}],"query_bed":[203,219],"query_length":16,"union_overlap_bases":16},"family":"stranded","fingerprint":"c612130884ca98e513e96e117f750245e095beedc144b446a5782d0d4c21b2f4","group_id":"c612130884ca98e513e96e117f750245e095beedc144b446a5782d0d4c21b2f4","id":"INTERVALS-0016943","index":16943,"input":{"contigs":{"synthetic_A":633,"synthetic_B":694},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":219,"start":203,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":219,"start":204,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":199,"start":157,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":474,"start":446,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":125,"start":80,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":285,"start":195,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":219,"start":203,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":8},{"feature_index":2,"overlap_bases":2}],"query_bed":[851,860],"query_length":9,"union_overlap_bases":9},"family":"overlapping_blocks","fingerprint":"44d533d89d79682cc6560956213d892cb62f6b7d486ab9bab16c4011a5b43cd0","group_id":"44d533d89d79682cc6560956213d892cb62f6b7d486ab9bab16c4011a5b43cd0","id":"INTERVALS-0016947","index":16947,"input":{"contigs":{"synthetic_A":1477,"synthetic_B":1385},"features":[{"basis":"one_closed","contig":"synthetic_B","end":854,"start":849,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":860,"start":853,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":863,"start":859,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1385,"start":1304,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":502,"start":478,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":121,"start":57,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":505,"start":483,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1134,"start":1061,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":250,"start":231,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":860,"start":852,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":15},{"feature_index":2,"overlap_bases":15}],"query_bed":[1090,1105],"query_length":15,"union_overlap_bases":15},"family":"stranded","fingerprint":"adabb79c74660f8b364e20e3125a0ce1cca70d0d27aee36fb78c80657c530c4c","group_id":"adabb79c74660f8b364e20e3125a0ce1cca70d0d27aee36fb78c80657c530c4c","id":"INTERVALS-0016958","index":16958,"input":{"contigs":{"synthetic_A":1692,"synthetic_B":1440},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1105,"start":1090,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1105,"start":1091,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1107,"start":995,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":513,"start":444,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1200,"start":1106,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":816,"start":769,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":485,"start":451,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":618,"start":518,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":857,"start":791,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":659,"start":636,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":191,"start":130,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1119,"start":1091,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1105,"start":1090,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73},{"feature_index":1,"overlap_bases":71},{"feature_index":7,"overlap_bases":9}],"query_bed":[135,208],"query_length":73,"union_overlap_bases":73},"family":"nested","fingerprint":"e77d6ce05b7e6727c42423e5ce6e45df17a9b1e3e2473c60e748e69dc95a0bb1","group_id":"e77d6ce05b7e6727c42423e5ce6e45df17a9b1e3e2473c60e748e69dc95a0bb1","id":"INTERVALS-0016976","index":16976,"input":{"contigs":{"synthetic_A":1435,"synthetic_B":897},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":213,"start":130,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":207,"start":136,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":612,"start":516,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":20,"start":9,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":314,"start":311,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":286,"start":256,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":735,"start":652,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":150,"start":141,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":208,"start":135,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":34}],"query_bed":[607,641],"query_length":34,"union_overlap_bases":34},"family":"stranded","fingerprint":"bf51660ee9c9efb0094bfb9be8e08ddd1d1f43797e63ab44f4c0b331498dbc94","group_id":"bf51660ee9c9efb0094bfb9be8e08ddd1d1f43797e63ab44f4c0b331498dbc94","id":"INTERVALS-0016978","index":16978,"input":{"contigs":{"synthetic_A":1688,"synthetic_B":1311},"features":[{"basis":"one_closed","contig":"synthetic_B","end":641,"start":608,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":641,"start":607,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1082,"start":975,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1396,"start":1314,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":638,"start":571,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":802,"start":782,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":577,"start":524,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1375,"start":1262,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1517,"start":1404,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":641,"start":608,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56},{"feature_index":1,"overlap_bases":54}],"query_bed":[283,339],"query_length":56,"union_overlap_bases":56},"family":"nested","fingerprint":"e55296f27653006bc2bc97cba1076be09cf3d781f8276e4a1821be44435e9f4e","group_id":"e55296f27653006bc2bc97cba1076be09cf3d781f8276e4a1821be44435e9f4e","id":"INTERVALS-0016981","index":16981,"input":{"contigs":{"synthetic_A":1015,"synthetic_B":1447},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":344,"start":278,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":338,"start":284,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":697,"start":673,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":275,"start":194,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1135,"start":1030,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":496,"start":455,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":875,"start":851,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":339,"start":284,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":30}],"query_bed":[436,466],"query_length":30,"union_overlap_bases":30},"family":"stranded","fingerprint":"bc1e4c361a59f6ae6af5bd6d97f829e0804df7e8cec2b61668ba29d366f09226","group_id":"bc1e4c361a59f6ae6af5bd6d97f829e0804df7e8cec2b61668ba29d366f09226","id":"INTERVALS-0016983","index":16983,"input":{"contigs":{"synthetic_A":967,"synthetic_B":1607},"features":[{"basis":"one_closed","contig":"synthetic_A","end":466,"start":437,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":466,"start":437,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":814,"start":707,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":968,"start":856,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":757,"start":739,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":765,"start":678,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":481,"start":418,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":466,"start":436,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":14},{"feature_index":2,"overlap_bases":2}],"query_bed":[272,287],"query_length":15,"union_overlap_bases":15},"family":"overlapping_blocks","fingerprint":"62655c7acb100eef26cebae660457768d595623135365a27e39793c4771b8001","group_id":"62655c7acb100eef26cebae660457768d595623135365a27e39793c4771b8001","id":"INTERVALS-0016987","index":16987,"input":{"contigs":{"synthetic_A":1527,"synthetic_B":866},"features":[{"basis":"one_closed","contig":"synthetic_B","end":275,"start":270,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":287,"start":273,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":290,"start":286,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":643,"start":603,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":728,"start":641,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":482,"start":440,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":117,"start":5,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":659,"start":588,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":104,"start":68,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":869,"start":764,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":103,"start":5,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":344,"start":308,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":287,"start":272,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":70},{"feature_index":5,"overlap_bases":22}],"query_bed":[380,450],"query_length":70,"union_overlap_bases":70},"family":"coordinate_conversion","fingerprint":"92a88a604321c9b6b7f83e09c3dd6bd130a83ebe640e801131887f9a8f90f036","group_id":"92a88a604321c9b6b7f83e09c3dd6bd130a83ebe640e801131887f9a8f90f036","id":"INTERVALS-0016989","index":16989,"input":{"contigs":{"synthetic_A":1034,"synthetic_B":741},"features":[{"basis":"one_closed","contig":"synthetic_B","end":450,"start":381,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":464,"start":413,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":953,"start":886,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":543,"start":503,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":704,"start":605,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":437,"start":416,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":628,"start":560,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":882,"start":853,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":85,"start":56,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":666,"start":562,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":450,"start":381,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[792,816],"query_length":24,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"b3ea9920851fc0dbf72225c9697b5ae5084f45d6ef35259d9dfc0f12640fd2e2","group_id":"b3ea9920851fc0dbf72225c9697b5ae5084f45d6ef35259d9dfc0f12640fd2e2","id":"INTERVALS-0016990","index":16990,"input":{"contigs":{"synthetic_A":1286,"synthetic_B":1669},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":792,"start":787,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":846,"start":816,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":297,"start":199,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":455,"start":358,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":128,"start":108,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1115,"start":1007,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":587,"start":586,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":185,"start":154,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":816,"start":792,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":10},{"feature_index":1,"overlap_bases":8}],"query_bed":[114,124],"query_length":10,"union_overlap_bases":10},"family":"nested","fingerprint":"201288f2a940b146418669af2a66216eb0dfd70439ac20daec3493085c36f1e0","group_id":"201288f2a940b146418669af2a66216eb0dfd70439ac20daec3493085c36f1e0","id":"INTERVALS-0017001","index":17001,"input":{"contigs":{"synthetic_A":827,"synthetic_B":1639},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":129,"start":109,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":123,"start":116,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1571,"start":1473,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":677,"start":668,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":648,"start":631,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":124,"start":114,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[210,251],"query_length":41,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"77622824666b425175c960e7285c5d985e4aa219404ad03717ab1074428d6965","group_id":"77622824666b425175c960e7285c5d985e4aa219404ad03717ab1074428d6965","id":"INTERVALS-0017010","index":17010,"input":{"contigs":{"synthetic_A":1084,"synthetic_B":645},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":210,"start":195,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":255,"start":251,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":607,"start":506,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":357,"start":354,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":165,"start":56,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":503,"start":438,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":453,"start":347,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":251,"start":211,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":23}],"query_bed":[333,356],"query_length":23,"union_overlap_bases":23},"family":"stranded","fingerprint":"37887fb46ce1d75433ca72fd8ceac037a0d0f68eef38d9ef52710f63171dda55","group_id":"37887fb46ce1d75433ca72fd8ceac037a0d0f68eef38d9ef52710f63171dda55","id":"INTERVALS-0017053","index":17053,"input":{"contigs":{"synthetic_A":602,"synthetic_B":1027},"features":[{"basis":"one_closed","contig":"synthetic_B","end":356,"start":334,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":356,"start":333,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":884,"start":859,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":423,"start":405,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":242,"start":185,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":939,"start":824,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":502,"start":462,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":227,"start":142,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":214,"start":187,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":295,"start":291,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":356,"start":333,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[326,349],"query_length":23,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"483e6f1c47de49624614b325a4604f446dad1c6a84003e3de705280e01d225a0","group_id":"483e6f1c47de49624614b325a4604f446dad1c6a84003e3de705280e01d225a0","id":"INTERVALS-0017055","index":17055,"input":{"contigs":{"synthetic_A":989,"synthetic_B":1092},"features":[{"basis":"one_closed","contig":"synthetic_A","end":326,"start":311,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":370,"start":350,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":433,"start":384,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":925,"start":822,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":534,"start":434,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":825,"start":782,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":524,"start":428,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":434,"start":406,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":763,"start":667,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":313,"start":251,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1054,"start":969,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":624,"start":572,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":349,"start":326,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":76},{"feature_index":2,"overlap_bases":2},{"feature_index":5,"overlap_bases":30}],"query_bed":[1017,1094],"query_length":77,"union_overlap_bases":77},"family":"overlapping_blocks","fingerprint":"802be0ee149a69ca6590c254d6d184407dd35bb0cb0ce277c0251418cb6544bf","group_id":"802be0ee149a69ca6590c254d6d184407dd35bb0cb0ce277c0251418cb6544bf","id":"INTERVALS-0017067","index":17067,"input":{"contigs":{"synthetic_A":1594,"synthetic_B":1563},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1020,"start":1015,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1094,"start":1019,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1097,"start":1093,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1219,"start":1194,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":950,"start":851,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1047,"start":937,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1094,"start":1018,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":2,"overlap_bases":27}],"query_bed":[521,596],"query_length":75,"union_overlap_bases":27},"family":"touching_boundary","fingerprint":"eb0e930cb50fdaf211507b1d8e48970047caf355494ae23ebbe9fe59094ae9fc","group_id":"eb0e930cb50fdaf211507b1d8e48970047caf355494ae23ebbe9fe59094ae9fc","id":"INTERVALS-0017070","index":17070,"input":{"contigs":{"synthetic_A":1042,"synthetic_B":823},"features":[{"basis":"one_closed","contig":"synthetic_B","end":521,"start":512,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":607,"start":596,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":683,"start":569,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":579,"start":545,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":829,"start":792,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":851,"start":818,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":929,"start":901,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":848,"start":825,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":291,"start":192,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":628,"start":621,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":259,"start":250,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":596,"start":522,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":16},{"feature_index":3,"overlap_bases":16}],"query_bed":[452,468],"query_length":16,"union_overlap_bases":16},"family":"coordinate_conversion","fingerprint":"c4ab144ccdfc6c76432c5887f77b93462b3d38e983a26cf51714306658eb62dc","group_id":"c4ab144ccdfc6c76432c5887f77b93462b3d38e983a26cf51714306658eb62dc","id":"INTERVALS-0017074","index":17074,"input":{"contigs":{"synthetic_A":1201,"synthetic_B":1591},"features":[{"basis":"one_closed","contig":"synthetic_A","end":468,"start":453,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":645,"start":572,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":144,"start":29,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":499,"start":390,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1342,"start":1278,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":936,"start":842,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":667,"start":584,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1091,"start":1061,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":201,"start":162,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":808,"start":780,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":483,"start":469,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":19,"start":17,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":468,"start":453,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[746,816],"query_length":70,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"652f01fef90998e21f51201e5c7bf9899ab3bc596c825a16ce81f10b04dae861","group_id":"652f01fef90998e21f51201e5c7bf9899ab3bc596c825a16ce81f10b04dae861","id":"INTERVALS-0017080","index":17080,"input":{"contigs":{"synthetic_A":973,"synthetic_B":1420},"features":[{"basis":"one_closed","contig":"synthetic_B","end":746,"start":735,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":835,"start":816,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1098,"start":1085,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":117,"start":41,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":302,"start":281,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1337,"start":1254,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":700,"start":680,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":976,"start":976,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1312,"start":1248,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1100,"start":988,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":400,"start":393,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":816,"start":746,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18}],"query_bed":[1352,1370],"query_length":18,"union_overlap_bases":18},"family":"stranded","fingerprint":"fc5b77106a57289e7e62e5c3f79b6675b0711b9ebd8fe3c0221273115700b9b6","group_id":"fc5b77106a57289e7e62e5c3f79b6675b0711b9ebd8fe3c0221273115700b9b6","id":"INTERVALS-0017098","index":17098,"input":{"contigs":{"synthetic_A":958,"synthetic_B":1593},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1370,"start":1352,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1370,"start":1352,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":362,"start":331,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":681,"start":561,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":436,"start":433,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1169,"start":1058,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":690,"start":663,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1370,"start":1352,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[337,388],"query_length":51,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"c8adbedcdb69b2d99682681dae77a5f94e0e03e2d9df2fbe639cf9f3c5d8d509","group_id":"c8adbedcdb69b2d99682681dae77a5f94e0e03e2d9df2fbe639cf9f3c5d8d509","id":"INTERVALS-0017100","index":17100,"input":{"contigs":{"synthetic_A":657,"synthetic_B":1611},"features":[{"basis":"one_closed","contig":"synthetic_B","end":337,"start":332,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":424,"start":389,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":889,"start":801,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":515,"start":503,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":242,"start":201,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":388,"start":338,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[330,365],"query_length":35,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"0715d49e69180e8ca4402b13d1411400b85ddb23fe08d3d66b7a1fc2a84b3d1f","group_id":"0715d49e69180e8ca4402b13d1411400b85ddb23fe08d3d66b7a1fc2a84b3d1f","id":"INTERVALS-0017105","index":17105,"input":{"contigs":{"synthetic_A":1632,"synthetic_B":1043},"features":[{"basis":"one_closed","contig":"synthetic_B","end":330,"start":312,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":389,"start":365,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":563,"start":498,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":359,"start":339,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1441,"start":1429,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":628,"start":602,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1496,"start":1463,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1397,"start":1361,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":365,"start":331,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[839,847],"query_length":8,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"5b744dc22442ab256cdd939c39400c6a3f7e2ace2e2d99b5e5d332f4866132ba","group_id":"5b744dc22442ab256cdd939c39400c6a3f7e2ace2e2d99b5e5d332f4866132ba","id":"INTERVALS-0017110","index":17110,"input":{"contigs":{"synthetic_A":1750,"synthetic_B":1586},"features":[{"basis":"one_closed","contig":"synthetic_A","end":839,"start":839,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":849,"start":847,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":973,"start":863,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1287,"start":1284,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":221,"start":144,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":318,"start":284,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1256,"start":1247,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":174,"start":105,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":497,"start":383,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":847,"start":839,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":45},{"feature_index":1,"overlap_bases":43}],"query_bed":[366,411],"query_length":45,"union_overlap_bases":45},"family":"nested","fingerprint":"e23517ba6fe72b977a21a2f99d6fb86714dd6684155a30f8a69da0952a88994f","group_id":"e23517ba6fe72b977a21a2f99d6fb86714dd6684155a30f8a69da0952a88994f","id":"INTERVALS-0017121","index":17121,"input":{"contigs":{"synthetic_A":1192,"synthetic_B":1196},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":416,"start":361,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":410,"start":368,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":412,"start":304,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":640,"start":530,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":888,"start":825,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":333,"start":303,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":583,"start":524,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":411,"start":366,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":15}],"query_bed":[599,614],"query_length":15,"union_overlap_bases":15},"family":"stranded","fingerprint":"e24366eedcccf378cf8895031397ee94b008a2c52220b98437274dae50fb0a15","group_id":"e24366eedcccf378cf8895031397ee94b008a2c52220b98437274dae50fb0a15","id":"INTERVALS-0017128","index":17128,"input":{"contigs":{"synthetic_A":1097,"synthetic_B":1040},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":614,"start":599,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":614,"start":599,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":392,"start":353,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":360,"start":325,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":534,"start":471,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":614,"start":600,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":30},{"feature_index":1,"overlap_bases":28}],"query_bed":[543,573],"query_length":30,"union_overlap_bases":30},"family":"nested","fingerprint":"0db6b642f0f18d433d35ccd5d8e9f882a1ccbbb5b134e33445357e028ec8359e","group_id":"0db6b642f0f18d433d35ccd5d8e9f882a1ccbbb5b134e33445357e028ec8359e","id":"INTERVALS-0017141","index":17141,"input":{"contigs":{"synthetic_A":1156,"synthetic_B":1303},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":578,"start":538,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":572,"start":545,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":323,"start":238,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":985,"start":907,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":618,"start":549,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":865,"start":774,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":301,"start":230,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":761,"start":678,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":573,"start":543,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":14}],"query_bed":[696,710],"query_length":14,"union_overlap_bases":14},"family":"coordinate_conversion","fingerprint":"25ecff28e96088cbd8bbf80aed67031c56f3b1a86e67feebad59367ab153faea","group_id":"25ecff28e96088cbd8bbf80aed67031c56f3b1a86e67feebad59367ab153faea","id":"INTERVALS-0017149","index":17149,"input":{"contigs":{"synthetic_A":1200,"synthetic_B":831},"features":[{"basis":"one_closed","contig":"synthetic_A","end":710,"start":697,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":619,"start":567,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":557,"start":533,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":108,"start":24,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":983,"start":898,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":227,"start":166,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":45,"start":22,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":545,"start":439,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1053,"start":983,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":439,"start":322,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":677,"start":601,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":495,"start":457,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":710,"start":697,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[617,643],"query_length":26,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"569a2088a880835ff57ff14afc82e55f39e3bf266117ee4dbe009260a7ce1787","group_id":"569a2088a880835ff57ff14afc82e55f39e3bf266117ee4dbe009260a7ce1787","id":"INTERVALS-0017165","index":17165,"input":{"contigs":{"synthetic_A":964,"synthetic_B":1010},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":617,"start":601,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":669,"start":644,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":966,"start":866,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":230,"start":188,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":420,"start":376,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":80,"start":58,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":813,"start":718,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":903,"start":830,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":178,"start":142,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":643,"start":617,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":30},{"feature_index":2,"overlap_bases":2}],"query_bed":[289,320],"query_length":31,"union_overlap_bases":31},"family":"overlapping_blocks","fingerprint":"e0bf83ca2ab2c387d83e9c3baf355b825e756632b7aef26d80781f80ddb2e2ee","group_id":"e0bf83ca2ab2c387d83e9c3baf355b825e756632b7aef26d80781f80ddb2e2ee","id":"INTERVALS-0017177","index":17177,"input":{"contigs":{"synthetic_A":1670,"synthetic_B":1420},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":292,"start":286,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":320,"start":291,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":323,"start":318,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":777,"start":761,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":704,"start":593,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":950,"start":863,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":105,"start":56,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":769,"start":708,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":189,"start":175,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":978,"start":950,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":235,"start":226,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":320,"start":289,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":13},{"feature_index":1,"overlap_bases":11}],"query_bed":[293,306],"query_length":13,"union_overlap_bases":13},"family":"nested","fingerprint":"7dee9ee823d841b61a776b3299e26c48ef707d7e1a97074228f1b1db9fbc5555","group_id":"7dee9ee823d841b61a776b3299e26c48ef707d7e1a97074228f1b1db9fbc5555","id":"INTERVALS-0017181","index":17181,"input":{"contigs":{"synthetic_A":1460,"synthetic_B":731},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":311,"start":288,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":305,"start":295,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":504,"start":425,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":813,"start":803,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":123,"start":38,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1347,"start":1243,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":215,"start":164,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":306,"start":293,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":56},{"feature_index":2,"overlap_bases":2}],"query_bed":[333,390],"query_length":57,"union_overlap_bases":57},"family":"overlapping_blocks","fingerprint":"a9bcb87ad305f57400a6e058feee59e4ae5611a1827c0ca04ad92dafcc519af4","group_id":"a9bcb87ad305f57400a6e058feee59e4ae5611a1827c0ca04ad92dafcc519af4","id":"INTERVALS-0017187","index":17187,"input":{"contigs":{"synthetic_A":1307,"synthetic_B":743},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":336,"start":330,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":390,"start":334,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":393,"start":388,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":954,"start":928,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":286,"start":226,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":468,"start":391,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":390,"start":333,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":54},{"feature_index":1,"overlap_bases":52},{"feature_index":10,"overlap_bases":47}],"query_bed":[627,681],"query_length":54,"union_overlap_bases":54},"family":"nested","fingerprint":"a71e09de52fdfda39f63407a6b263963b0b35457b330c024bb1a87e6aadf7944","group_id":"a71e09de52fdfda39f63407a6b263963b0b35457b330c024bb1a87e6aadf7944","id":"INTERVALS-0017191","index":17191,"input":{"contigs":{"synthetic_A":1664,"synthetic_B":1577},"features":[{"basis":"one_closed","contig":"synthetic_B","end":686,"start":623,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":680,"start":629,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1465,"start":1456,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":944,"start":829,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":87,"start":24,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":276,"start":220,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1262,"start":1152,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":392,"start":340,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1019,"start":958,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":325,"start":279,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":725,"start":635,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":833,"start":761,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":681,"start":627,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":51},{"feature_index":2,"overlap_bases":2},{"feature_index":5,"overlap_bases":30}],"query_bed":[280,332],"query_length":52,"union_overlap_bases":52},"family":"overlapping_blocks","fingerprint":"60706b62fa444d1c677685ccd7bd56203cdc59e1733d719d0b133182a40ba057","group_id":"60706b62fa444d1c677685ccd7bd56203cdc59e1733d719d0b133182a40ba057","id":"INTERVALS-0017197","index":17197,"input":{"contigs":{"synthetic_A":1135,"synthetic_B":927},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":283,"start":277,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":332,"start":282,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":335,"start":330,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":236,"start":161,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":881,"start":855,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":310,"start":257,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":846,"start":785,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":696,"start":582,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":619,"start":609,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":332,"start":280,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":61}],"query_bed":[294,355],"query_length":61,"union_overlap_bases":61},"family":"stranded","fingerprint":"1d18401a2f449968a5c894653845154f125338591903724beeeb62ab8c408001","group_id":"1d18401a2f449968a5c894653845154f125338591903724beeeb62ab8c408001","id":"INTERVALS-0017198","index":17198,"input":{"contigs":{"synthetic_A":847,"synthetic_B":674},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":355,"start":294,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":355,"start":294,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":523,"start":469,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":593,"start":499,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":244,"start":231,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":108,"start":26,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":332,"start":264,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":714,"start":707,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":492,"start":475,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":254,"start":181,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":434,"start":425,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":139,"start":98,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":355,"start":295,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":10,"overlap_bases":21},{"feature_index":11,"overlap_bases":5}],"query_bed":[310,384],"query_length":74,"union_overlap_bases":26},"family":"touching_boundary","fingerprint":"4d7e57b25f3ead07bc8aa231048d3c6c7926af063f62d663a417e76be1141161","group_id":"4d7e57b25f3ead07bc8aa231048d3c6c7926af063f62d663a417e76be1141161","id":"INTERVALS-0017200","index":17200,"input":{"contigs":{"synthetic_A":928,"synthetic_B":932},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":310,"start":300,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":412,"start":385,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":622,"start":554,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":792,"start":681,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":708,"start":618,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":576,"start":568,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":699,"start":599,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":123,"start":42,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":456,"start":438,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":511,"start":415,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":333,"start":313,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":365,"start":360,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":384,"start":310,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[782,804],"query_length":22,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"171d7a2c7ffe4136d8001b0470dbddc8d9680179aa128e90a615acbd41487f92","group_id":"171d7a2c7ffe4136d8001b0470dbddc8d9680179aa128e90a615acbd41487f92","id":"INTERVALS-0017220","index":17220,"input":{"contigs":{"synthetic_A":1084,"synthetic_B":1247},"features":[{"basis":"one_closed","contig":"synthetic_A","end":782,"start":776,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":830,"start":805,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":833,"start":799,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":333,"start":324,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":101,"start":68,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":633,"start":519,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":119,"start":33,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":594,"start":552,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":804,"start":783,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[403,428],"query_length":25,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"2eb72dd68808534bdc5dadbee3a91a78ca356c1d15ef003699de9c84809b791e","group_id":"2eb72dd68808534bdc5dadbee3a91a78ca356c1d15ef003699de9c84809b791e","id":"INTERVALS-0017225","index":17225,"input":{"contigs":{"synthetic_A":1074,"synthetic_B":734},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":403,"start":386,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":441,"start":429,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":564,"start":454,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":622,"start":525,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":69,"start":34,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":505,"start":433,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":890,"start":775,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":462,"start":388,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":578,"start":467,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":428,"start":404,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":6}],"query_bed":[798,804],"query_length":6,"union_overlap_bases":6},"family":"coordinate_conversion","fingerprint":"05de61b8d70cfa0daead15941cc8ab5f9281b3c784f13e533fbd9c4fabad6d6f","group_id":"05de61b8d70cfa0daead15941cc8ab5f9281b3c784f13e533fbd9c4fabad6d6f","id":"INTERVALS-0017229","index":17229,"input":{"contigs":{"synthetic_A":898,"synthetic_B":1485},"features":[{"basis":"one_closed","contig":"synthetic_B","end":804,"start":799,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":517,"start":419,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":831,"start":769,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":556,"start":476,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":765,"start":655,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":264,"start":228,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":150,"start":105,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":775,"start":711,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1377,"start":1322,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":804,"start":799,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1206,1260],"query_length":54,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"91e75c96ec208d0355b4a7dc0312f6aa95cdb28101630e44739987fc98a725c0","group_id":"91e75c96ec208d0355b4a7dc0312f6aa95cdb28101630e44739987fc98a725c0","id":"INTERVALS-0017230","index":17230,"input":{"contigs":{"synthetic_A":710,"synthetic_B":1463},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1206,"start":1201,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1279,"start":1261,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":649,"start":565,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":803,"start":798,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":318,"start":246,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":334,"start":296,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":248,"start":137,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":509,"start":394,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":505,"start":485,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":927,"start":897,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":572,"start":559,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1260,"start":1206,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":62}],"query_bed":[449,511],"query_length":62,"union_overlap_bases":62},"family":"stranded","fingerprint":"91b0e1fcbace5b0972c78a3af01997001feefc5239171ca53dc407a6cebb6ffd","group_id":"91b0e1fcbace5b0972c78a3af01997001feefc5239171ca53dc407a6cebb6ffd","id":"INTERVALS-0017238","index":17238,"input":{"contigs":{"synthetic_A":1390,"synthetic_B":982},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":511,"start":449,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":511,"start":449,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":99,"start":5,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":129,"start":14,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":122,"start":36,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":427,"start":421,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":511,"start":449,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[256,305],"query_length":49,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"0adef6468f231f3f5e9cdc9d575cf9bd6a69cb55c72b15372b1c6bc788e35ea0","group_id":"0adef6468f231f3f5e9cdc9d575cf9bd6a69cb55c72b15372b1c6bc788e35ea0","id":"INTERVALS-0017245","index":17245,"input":{"contigs":{"synthetic_A":881,"synthetic_B":1260},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":256,"start":246,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":327,"start":305,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1008,"start":893,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1121,"start":1044,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":189,"start":129,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":419,"start":337,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1053,"start":944,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":655,"start":567,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":971,"start":909,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":305,"start":257,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[961,988],"query_length":27,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"5b1eedfaa1a0d4ecd629c6b0458adb3776012fcc2c32f66c9702b3fb49d64057","group_id":"5b1eedfaa1a0d4ecd629c6b0458adb3776012fcc2c32f66c9702b3fb49d64057","id":"INTERVALS-0017270","index":17270,"input":{"contigs":{"synthetic_A":1651,"synthetic_B":1688},"features":[{"basis":"one_closed","contig":"synthetic_B","end":961,"start":946,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":989,"start":989,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1116,"start":1056,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":249,"start":242,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1159,"start":1131,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":988,"start":962,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":50}],"query_bed":[405,455],"query_length":50,"union_overlap_bases":50},"family":"coordinate_conversion","fingerprint":"6a34d2aa71e2a7ee67f82fd56f08e4d5f90bb0dd6bcac552e9f47cb23a1bbde5","group_id":"6a34d2aa71e2a7ee67f82fd56f08e4d5f90bb0dd6bcac552e9f47cb23a1bbde5","id":"INTERVALS-0017284","index":17284,"input":{"contigs":{"synthetic_A":1242,"synthetic_B":976},"features":[{"basis":"one_closed","contig":"synthetic_A","end":455,"start":406,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":841,"start":757,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":701,"start":615,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":147,"start":105,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":933,"start":895,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1106,"start":1084,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":925,"start":874,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":455,"start":406,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":71}],"query_bed":[1310,1381],"query_length":71,"union_overlap_bases":71},"family":"coordinate_conversion","fingerprint":"4ad5efe8bb2508bb85feb9a6b4191cc45e64c59da1f3243021f026178656fa1f","group_id":"4ad5efe8bb2508bb85feb9a6b4191cc45e64c59da1f3243021f026178656fa1f","id":"INTERVALS-0017289","index":17289,"input":{"contigs":{"synthetic_A":1768,"synthetic_B":1742},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1381,"start":1311,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":395,"start":386,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":826,"start":737,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":440,"start":439,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1041,"start":1027,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1254,"start":1145,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":482,"start":387,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":809,"start":756,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1381,"start":1311,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[253,298],"query_length":45,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"cf5d88f26f941e8190343cde1d649d1668d56702e7978982d64441683b1cea8f","group_id":"cf5d88f26f941e8190343cde1d649d1668d56702e7978982d64441683b1cea8f","id":"INTERVALS-0017315","index":17315,"input":{"contigs":{"synthetic_A":1580,"synthetic_B":1043},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":253,"start":251,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":304,"start":298,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":161,"start":101,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1448,"start":1378,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":478,"start":457,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":153,"start":98,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1120,"start":1080,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":294,"start":223,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1444,"start":1428,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1391,"start":1319,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":242,"start":182,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":905,"start":800,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":298,"start":253,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":35},{"feature_index":1,"overlap_bases":33}],"query_bed":[455,490],"query_length":35,"union_overlap_bases":35},"family":"nested","fingerprint":"c9cac2b0657c498d97ff3f4c9922413a8c8c4b3019b73233ccc49ed60b9dee2b","group_id":"c9cac2b0657c498d97ff3f4c9922413a8c8c4b3019b73233ccc49ed60b9dee2b","id":"INTERVALS-0017321","index":17321,"input":{"contigs":{"synthetic_A":813,"synthetic_B":717},"features":[{"basis":"one_closed","contig":"synthetic_B","end":495,"start":451,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":489,"start":456,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":137,"start":42,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":138,"start":40,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":78,"start":14,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":430,"start":403,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":490,"start":455,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":72},{"feature_index":1,"overlap_bases":70}],"query_bed":[94,166],"query_length":72,"union_overlap_bases":72},"family":"nested","fingerprint":"5cf1bdb0051816e85e9d2170f1c4cc22df272520105cbf22f61e2efd621569f7","group_id":"5cf1bdb0051816e85e9d2170f1c4cc22df272520105cbf22f61e2efd621569f7","id":"INTERVALS-0017331","index":17331,"input":{"contigs":{"synthetic_A":992,"synthetic_B":612},"features":[{"basis":"one_closed","contig":"synthetic_B","end":171,"start":90,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":165,"start":95,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":408,"start":396,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":789,"start":778,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":284,"start":267,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":562,"start":551,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":601,"start":597,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":459,"start":452,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":166,"start":94,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":41},{"feature_index":2,"overlap_bases":2}],"query_bed":[390,432],"query_length":42,"union_overlap_bases":42},"family":"overlapping_blocks","fingerprint":"e6c9258c7b69b5001d5c93a1df8e278d29ff5eab7641b23ab6c176e31e7118a9","group_id":"e6c9258c7b69b5001d5c93a1df8e278d29ff5eab7641b23ab6c176e31e7118a9","id":"INTERVALS-0017332","index":17332,"input":{"contigs":{"synthetic_A":1800,"synthetic_B":1667},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":393,"start":387,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":432,"start":392,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":435,"start":430,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":748,"start":657,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1158,"start":1067,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1706,"start":1656,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1251,"start":1168,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1171,"start":1118,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":902,"start":887,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":432,"start":390,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56}],"query_bed":[368,424],"query_length":56,"union_overlap_bases":56},"family":"coordinate_conversion","fingerprint":"58aa498467c851975b9c871baf3762eda82e0641bd1b890ffa09f7903de6f91e","group_id":"58aa498467c851975b9c871baf3762eda82e0641bd1b890ffa09f7903de6f91e","id":"INTERVALS-0017334","index":17334,"input":{"contigs":{"synthetic_A":831,"synthetic_B":790},"features":[{"basis":"one_closed","contig":"synthetic_B","end":424,"start":369,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":149,"start":41,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":64,"start":18,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":147,"start":96,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":695,"start":622,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":116,"start":24,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":339,"start":237,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":424,"start":369,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":16},{"feature_index":1,"overlap_bases":14}],"query_bed":[354,370],"query_length":16,"union_overlap_bases":16},"family":"nested","fingerprint":"c7aff7cab4ea91158c183ce57fd2beb5d626668fb23ac53e36da932d1abad402","group_id":"c7aff7cab4ea91158c183ce57fd2beb5d626668fb23ac53e36da932d1abad402","id":"INTERVALS-0017361","index":17361,"input":{"contigs":{"synthetic_A":1290,"synthetic_B":1734},"features":[{"basis":"one_closed","contig":"synthetic_A","end":375,"start":350,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":369,"start":356,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":988,"start":875,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":110,"start":7,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":598,"start":486,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":370,"start":355,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":78}],"query_bed":[456,534],"query_length":78,"union_overlap_bases":78},"family":"coordinate_conversion","fingerprint":"a36116ce5527a9af5187ffbba6a2281ca360ff9ee68c8f54278115296ca4b444","group_id":"a36116ce5527a9af5187ffbba6a2281ca360ff9ee68c8f54278115296ca4b444","id":"INTERVALS-0017364","index":17364,"input":{"contigs":{"synthetic_A":717,"synthetic_B":704},"features":[{"basis":"one_closed","contig":"synthetic_A","end":534,"start":457,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":47,"start":1,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":237,"start":171,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":689,"start":593,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":601,"start":497,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":534,"start":457,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":57}],"query_bed":[417,474],"query_length":57,"union_overlap_bases":57},"family":"stranded","fingerprint":"f67fe16ece8cf11092bd854695273232c10df7ae16008f5668053e1595461a28","group_id":"f67fe16ece8cf11092bd854695273232c10df7ae16008f5668053e1595461a28","id":"INTERVALS-0017373","index":17373,"input":{"contigs":{"synthetic_A":1277,"synthetic_B":1052},"features":[{"basis":"one_closed","contig":"synthetic_B","end":474,"start":418,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":474,"start":417,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":280,"start":257,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":347,"start":309,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1146,"start":1143,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1216,"start":1120,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":474,"start":418,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":6},{"feature_index":1,"overlap_bases":4}],"query_bed":[266,272],"query_length":6,"union_overlap_bases":6},"family":"nested","fingerprint":"227af1c4113d03a1e62e1b8136ffa51c9a3ca1e23ddabfe28c45b15070ac128d","group_id":"227af1c4113d03a1e62e1b8136ffa51c9a3ca1e23ddabfe28c45b15070ac128d","id":"INTERVALS-0017376","index":17376,"input":{"contigs":{"synthetic_A":1289,"synthetic_B":689},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":277,"start":261,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":271,"start":268,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":579,"start":561,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":485,"start":455,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":542,"start":436,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":272,"start":266,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[139,167],"query_length":28,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e2213e84a973e5024c204bceca581ba2cf836af21a573b078451efe0e65aa4b2","group_id":"e2213e84a973e5024c204bceca581ba2cf836af21a573b078451efe0e65aa4b2","id":"INTERVALS-0017380","index":17380,"input":{"contigs":{"synthetic_A":1531,"synthetic_B":881},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":139,"start":121,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":177,"start":167,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":684,"start":583,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":267,"start":240,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":304,"start":230,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":167,"start":139,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":6}],"query_bed":[928,934],"query_length":6,"union_overlap_bases":6},"family":"stranded","fingerprint":"c61ccb40d4ba9986f619c7b8332703750885382ed676ea3a9d012c103689e727","group_id":"c61ccb40d4ba9986f619c7b8332703750885382ed676ea3a9d012c103689e727","id":"INTERVALS-0017383","index":17383,"input":{"contigs":{"synthetic_A":1565,"synthetic_B":1686},"features":[{"basis":"one_closed","contig":"synthetic_A","end":934,"start":929,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":934,"start":929,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1422,"start":1338,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":297,"start":246,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":406,"start":334,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":829,"start":769,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1275,"start":1224,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1437,"start":1421,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":934,"start":929,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":58},{"feature_index":2,"overlap_bases":2}],"query_bed":[274,333],"query_length":59,"union_overlap_bases":59},"family":"overlapping_blocks","fingerprint":"b4e7d0f4be4a6eeb50a96b3ca1ee3bb7f97944d6ecf937f7c9324a2fbd024c66","group_id":"b4e7d0f4be4a6eeb50a96b3ca1ee3bb7f97944d6ecf937f7c9324a2fbd024c66","id":"INTERVALS-0017392","index":17392,"input":{"contigs":{"synthetic_A":1446,"synthetic_B":1795},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":277,"start":271,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":333,"start":276,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":336,"start":332,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":521,"start":449,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":756,"start":720,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":491,"start":489,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":333,"start":274,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":16}],"query_bed":[294,310],"query_length":16,"union_overlap_bases":16},"family":"coordinate_conversion","fingerprint":"a8faf636a6deb3b55b152abc977cef310042238846745f4c105fb3d77e4eff56","group_id":"a8faf636a6deb3b55b152abc977cef310042238846745f4c105fb3d77e4eff56","id":"INTERVALS-0017409","index":17409,"input":{"contigs":{"synthetic_A":1311,"synthetic_B":1278},"features":[{"basis":"one_closed","contig":"synthetic_B","end":310,"start":295,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":987,"start":933,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":727,"start":712,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1059,"start":955,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":897,"start":831,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":190,"start":85,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1168,"start":1114,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":87,"start":33,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":310,"start":295,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":8},{"feature_index":2,"overlap_bases":2}],"query_bed":[768,777],"query_length":9,"union_overlap_bases":9},"family":"overlapping_blocks","fingerprint":"d850ddecc46662654018b53ad090f24f9a92659159cfe6ccc8bf5ea5183f4e26","group_id":"d850ddecc46662654018b53ad090f24f9a92659159cfe6ccc8bf5ea5183f4e26","id":"INTERVALS-0017437","index":17437,"input":{"contigs":{"synthetic_A":1290,"synthetic_B":1194},"features":[{"basis":"one_closed","contig":"synthetic_A","end":771,"start":766,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":777,"start":770,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":780,"start":775,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":737,"start":706,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1217,"start":1110,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":727,"start":696,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1060,"start":1053,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":628,"start":605,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":777,"start":768,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":6,"overlap_bases":7}],"query_bed":[717,744],"query_length":27,"union_overlap_bases":7},"family":"touching_boundary","fingerprint":"d90250e09c3395cca6909264b2720c97cdaec881163f25f2dcd328cf47581134","group_id":"d90250e09c3395cca6909264b2720c97cdaec881163f25f2dcd328cf47581134","id":"INTERVALS-0017450","index":17450,"input":{"contigs":{"synthetic_A":1266,"synthetic_B":1664},"features":[{"basis":"one_closed","contig":"synthetic_B","end":717,"start":709,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":771,"start":745,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1557,"start":1489,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":231,"start":214,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1029,"start":1001,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":594,"start":526,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":760,"start":737,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1017,"start":937,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":744,"start":717,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":45},{"feature_index":2,"overlap_bases":2}],"query_bed":[219,265],"query_length":46,"union_overlap_bases":46},"family":"overlapping_blocks","fingerprint":"3b98780cf244035c0fdeb82c19d565486d791209ba39ff5efcfafe3368f2be6d","group_id":"3b98780cf244035c0fdeb82c19d565486d791209ba39ff5efcfafe3368f2be6d","id":"INTERVALS-0017457","index":17457,"input":{"contigs":{"synthetic_A":1184,"synthetic_B":1076},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":222,"start":216,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":265,"start":221,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":268,"start":263,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":693,"start":609,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":634,"start":576,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":397,"start":332,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":596,"start":565,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":721,"start":604,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":868,"start":774,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":50,"start":16,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":265,"start":198,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":462,"start":435,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":265,"start":220,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[87,143],"query_length":56,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"762f06f2802ddc2e70d43d8884e141f6c31ce35b0f7fbe64fb30baa587526089","group_id":"762f06f2802ddc2e70d43d8884e141f6c31ce35b0f7fbe64fb30baa587526089","id":"INTERVALS-0017460","index":17460,"input":{"contigs":{"synthetic_A":879,"synthetic_B":1260},"features":[{"basis":"one_closed","contig":"synthetic_B","end":87,"start":73,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":163,"start":143,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":44,"start":35,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":369,"start":293,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":561,"start":477,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":772,"start":691,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":862,"start":795,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":673,"start":571,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":143,"start":88,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18}],"query_bed":[31,49],"query_length":18,"union_overlap_bases":18},"family":"stranded","fingerprint":"7378dff05ba4ecf0abf6f5422b2bafa254552b9bf59268c74f6ee8f8901b6f72","group_id":"7378dff05ba4ecf0abf6f5422b2bafa254552b9bf59268c74f6ee8f8901b6f72","id":"INTERVALS-0017468","index":17468,"input":{"contigs":{"synthetic_A":1320,"synthetic_B":720},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":49,"start":31,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":49,"start":31,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1100,"start":1065,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":868,"start":800,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":825,"start":728,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":635,"start":559,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":795,"start":738,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":821,"start":776,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":589,"start":513,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":303,"start":291,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":49,"start":32,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":76},{"feature_index":2,"overlap_bases":2},{"feature_index":5,"overlap_bases":47},{"feature_index":6,"overlap_bases":45},{"feature_index":7,"overlap_bases":16}],"query_bed":[159,236],"query_length":77,"union_overlap_bases":77},"family":"overlapping_blocks","fingerprint":"3b6d23f0de51c636723542ebb99fced5d403af17a4a78e4c30a0ee7f774262ac","group_id":"3b6d23f0de51c636723542ebb99fced5d403af17a4a78e4c30a0ee7f774262ac","id":"INTERVALS-0017482","index":17482,"input":{"contigs":{"synthetic_A":1175,"synthetic_B":745},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":162,"start":156,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":236,"start":160,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":239,"start":235,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":602,"start":569,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":365,"start":285,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":232,"start":186,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":212,"start":168,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":305,"start":220,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":496,"start":476,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":886,"start":801,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":639,"start":614,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":581,"start":498,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":236,"start":159,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":31}],"query_bed":[430,461],"query_length":31,"union_overlap_bases":31},"family":"coordinate_conversion","fingerprint":"3bcb2d92947101fd0eede2868f8030a64a859e8fc5ff275896229646f1d1440a","group_id":"3bcb2d92947101fd0eede2868f8030a64a859e8fc5ff275896229646f1d1440a","id":"INTERVALS-0017489","index":17489,"input":{"contigs":{"synthetic_A":1452,"synthetic_B":1361},"features":[{"basis":"one_closed","contig":"synthetic_B","end":461,"start":431,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":791,"start":749,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1068,"start":991,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":338,"start":220,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1009,"start":924,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1437,"start":1319,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1177,"start":1098,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":419,"start":412,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1036,"start":1016,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":461,"start":431,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":62}],"query_bed":[42,104],"query_length":62,"union_overlap_bases":62},"family":"coordinate_conversion","fingerprint":"875576828b938254c09ad10482dbc4d1348b7ae8ed552b36e6b3f914664b2568","group_id":"875576828b938254c09ad10482dbc4d1348b7ae8ed552b36e6b3f914664b2568","id":"INTERVALS-0017504","index":17504,"input":{"contigs":{"synthetic_A":1048,"synthetic_B":1640},"features":[{"basis":"one_closed","contig":"synthetic_A","end":104,"start":43,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":128,"start":37,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":607,"start":606,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":118,"start":118,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":229,"start":210,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":912,"start":826,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":360,"start":320,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":367,"start":327,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":663,"start":569,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":104,"start":43,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":29},{"feature_index":2,"overlap_bases":2}],"query_bed":[34,64],"query_length":30,"union_overlap_bases":30},"family":"overlapping_blocks","fingerprint":"a764667c4b83ab577c0057fade4e4d89affc4aaf22182c71b37476bfa14a776c","group_id":"a764667c4b83ab577c0057fade4e4d89affc4aaf22182c71b37476bfa14a776c","id":"INTERVALS-0017542","index":17542,"input":{"contigs":{"synthetic_A":1521,"synthetic_B":1330},"features":[{"basis":"one_closed","contig":"synthetic_A","end":37,"start":32,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":64,"start":36,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":67,"start":62,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1039,"start":991,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":271,"start":162,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":25,"start":5,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":205,"start":171,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":623,"start":515,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1127,"start":1098,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":64,"start":34,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[1114,1149],"query_length":35,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"1b118d1ce27b7b38ae2f8a6f1836b5791bb6a9fb4d322c46364bce4beaada59d","group_id":"1b118d1ce27b7b38ae2f8a6f1836b5791bb6a9fb4d322c46364bce4beaada59d","id":"INTERVALS-0017545","index":17545,"input":{"contigs":{"synthetic_A":1559,"synthetic_B":1671},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1114,"start":1107,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1165,"start":1150,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":346,"start":319,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1248,"start":1192,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":883,"start":853,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1348,"start":1297,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":827,"start":803,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1386,"start":1370,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":524,"start":496,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":601,"start":526,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1523,"start":1442,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":125,"start":55,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1149,"start":1114,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":27},{"feature_index":1,"overlap_bases":25}],"query_bed":[505,532],"query_length":27,"union_overlap_bases":27},"family":"nested","fingerprint":"01eab494bdeda51bcf6da1a152be161617d6c8c8e8950badb2116e47354ef6f1","group_id":"01eab494bdeda51bcf6da1a152be161617d6c8c8e8950badb2116e47354ef6f1","id":"INTERVALS-0017571","index":17571,"input":{"contigs":{"synthetic_A":1197,"synthetic_B":1134},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":537,"start":500,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":531,"start":507,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":794,"start":717,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":531,"start":460,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":875,"start":837,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":670,"start":609,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":457,"start":377,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":872,"start":785,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":567,"start":450,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":778,"start":663,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":284,"start":195,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":310,"start":198,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":532,"start":505,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[32,62],"query_length":30,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"8eaffbbeada6d768fc553a9a0c52b59c78f27dd36fd53cff14487e280d496283","group_id":"8eaffbbeada6d768fc553a9a0c52b59c78f27dd36fd53cff14487e280d496283","id":"INTERVALS-0017580","index":17580,"input":{"contigs":{"synthetic_A":863,"synthetic_B":1397},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":32,"start":18,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":90,"start":62,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":574,"start":541,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":336,"start":263,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":317,"start":258,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":510,"start":421,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":62,"start":33,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18},{"feature_index":8,"overlap_bases":3}],"query_bed":[850,868],"query_length":18,"union_overlap_bases":18},"family":"coordinate_conversion","fingerprint":"d5e77ca0c4ec777dc38042d4b23cd39409a413ccd30ff801641052f5fd7adb9a","group_id":"d5e77ca0c4ec777dc38042d4b23cd39409a413ccd30ff801641052f5fd7adb9a","id":"INTERVALS-0017589","index":17589,"input":{"contigs":{"synthetic_A":1232,"synthetic_B":1525},"features":[{"basis":"one_closed","contig":"synthetic_A","end":868,"start":851,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":233,"start":228,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":545,"start":504,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":387,"start":277,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":116,"start":88,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":446,"start":405,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":328,"start":242,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":257,"start":251,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":853,"start":813,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1440,"start":1394,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":412,"start":339,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1449,"start":1331,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":868,"start":851,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":9},{"feature_index":2,"overlap_bases":2}],"query_bed":[1285,1295],"query_length":10,"union_overlap_bases":10},"family":"overlapping_blocks","fingerprint":"a4f12182cbca197a857ae94eb2ad70f52595245d8947183430a0b3ae0658a3f8","group_id":"a4f12182cbca197a857ae94eb2ad70f52595245d8947183430a0b3ae0658a3f8","id":"INTERVALS-0017597","index":17597,"input":{"contigs":{"synthetic_A":1742,"synthetic_B":1511},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1288,"start":1282,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1295,"start":1286,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1298,"start":1294,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1280,"start":1270,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":386,"start":383,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":146,"start":84,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1295,"start":1286,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":77}],"query_bed":[445,522],"query_length":77,"union_overlap_bases":77},"family":"coordinate_conversion","fingerprint":"0d78f00a34206f674df84db6cebbefe0fcd5237ed3fbf01c1f70383b819ba6e9","group_id":"0d78f00a34206f674df84db6cebbefe0fcd5237ed3fbf01c1f70383b819ba6e9","id":"INTERVALS-0017599","index":17599,"input":{"contigs":{"synthetic_A":1572,"synthetic_B":1107},"features":[{"basis":"one_closed","contig":"synthetic_A","end":522,"start":446,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":325,"start":244,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":835,"start":770,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":299,"start":250,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":369,"start":317,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":273,"start":175,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":173,"start":140,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":437,"start":406,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":269,"start":193,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":841,"start":783,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":522,"start":446,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[335,403],"query_length":68,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"a639323ca5f0763cccc98d17f604e33b8856fd4828c52bc72bc3898551b7c92e","group_id":"a639323ca5f0763cccc98d17f604e33b8856fd4828c52bc72bc3898551b7c92e","id":"INTERVALS-0017600","index":17600,"input":{"contigs":{"synthetic_A":863,"synthetic_B":1795},"features":[{"basis":"one_closed","contig":"synthetic_A","end":335,"start":327,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":424,"start":403,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":280,"start":211,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1209,"start":1183,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":323,"start":238,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":213,"start":117,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":835,"start":834,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":663,"start":563,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":338,"start":240,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":658,"start":543,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":852,"start":744,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":506,"start":425,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":403,"start":336,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":62},{"feature_index":1,"overlap_bases":60}],"query_bed":[512,574],"query_length":62,"union_overlap_bases":62},"family":"nested","fingerprint":"5086fe3c26c12515864021f1ea9d361cced7c47e6200308cc1ac7df118a59a2c","group_id":"5086fe3c26c12515864021f1ea9d361cced7c47e6200308cc1ac7df118a59a2c","id":"INTERVALS-0017606","index":17606,"input":{"contigs":{"synthetic_A":1583,"synthetic_B":1057},"features":[{"basis":"one_closed","contig":"synthetic_A","end":579,"start":508,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":573,"start":514,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1355,"start":1301,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":82,"start":63,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":672,"start":652,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":574,"start":512,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[84,96],"query_length":12,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"d48ccf68ea2b17d4e1ef6bcea9fae9d0bf72c8ccdfde38dce6fd71674a6dd11f","group_id":"d48ccf68ea2b17d4e1ef6bcea9fae9d0bf72c8ccdfde38dce6fd71674a6dd11f","id":"INTERVALS-0017610","index":17610,"input":{"contigs":{"synthetic_A":1305,"synthetic_B":819},"features":[{"basis":"one_closed","contig":"synthetic_A","end":84,"start":75,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":125,"start":96,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":220,"start":188,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":514,"start":490,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":230,"start":121,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1148,"start":1033,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":837,"start":738,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":96,"start":84,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":75},{"feature_index":2,"overlap_bases":2}],"query_bed":[247,323],"query_length":76,"union_overlap_bases":76},"family":"overlapping_blocks","fingerprint":"351ba2921b48dbee89bfb85fc3479810edee912280676cbd37359eea6d01f049","group_id":"351ba2921b48dbee89bfb85fc3479810edee912280676cbd37359eea6d01f049","id":"INTERVALS-0017612","index":17612,"input":{"contigs":{"synthetic_A":1466,"synthetic_B":687},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":250,"start":244,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":323,"start":249,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":326,"start":322,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":437,"start":404,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":140,"start":53,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":263,"start":213,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":323,"start":248,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":54},{"feature_index":2,"overlap_bases":2}],"query_bed":[82,137],"query_length":55,"union_overlap_bases":55},"family":"overlapping_blocks","fingerprint":"2057476200a91708c4d6483fdcb9edddef374a2a0ca8669ab06d16d67ced260d","group_id":"2057476200a91708c4d6483fdcb9edddef374a2a0ca8669ab06d16d67ced260d","id":"INTERVALS-0017662","index":17662,"input":{"contigs":{"synthetic_A":1449,"synthetic_B":1420},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":85,"start":79,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":137,"start":84,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":140,"start":136,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":697,"start":598,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":530,"start":501,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":248,"start":170,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":324,"start":292,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1254,"start":1233,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1181,"start":1103,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":648,"start":639,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":732,"start":632,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":315,"start":283,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":137,"start":82,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":14}],"query_bed":[339,353],"query_length":14,"union_overlap_bases":14},"family":"stranded","fingerprint":"331b196e150da011ed868be8ffad5e6258f62a22864c85440cf8aeb03eb75b39","group_id":"331b196e150da011ed868be8ffad5e6258f62a22864c85440cf8aeb03eb75b39","id":"INTERVALS-0017673","index":17673,"input":{"contigs":{"synthetic_A":635,"synthetic_B":1587},"features":[{"basis":"one_closed","contig":"synthetic_A","end":353,"start":340,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":353,"start":340,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1471,"start":1390,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":306,"start":228,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":525,"start":413,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1134,"start":1126,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":115,"start":14,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":249,"start":162,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":353,"start":339,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[95,109],"query_length":14,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"796006be5a8093680107938e10e271f26f6d28b6fadf81dfa2185339d1be4ffb","group_id":"796006be5a8093680107938e10e271f26f6d28b6fadf81dfa2185339d1be4ffb","id":"INTERVALS-0017720","index":17720,"input":{"contigs":{"synthetic_A":950,"synthetic_B":1715},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":95,"start":75,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":112,"start":109,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1425,"start":1345,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":205,"start":184,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":362,"start":351,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":882,"start":814,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":467,"start":437,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":109,"start":95,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":17},{"feature_index":2,"overlap_bases":2}],"query_bed":[1008,1026],"query_length":18,"union_overlap_bases":18},"family":"overlapping_blocks","fingerprint":"6c5c11f614388f21291a5ce788ef862ce24052c106b21d0c972afde3c710f920","group_id":"6c5c11f614388f21291a5ce788ef862ce24052c106b21d0c972afde3c710f920","id":"INTERVALS-0017742","index":17742,"input":{"contigs":{"synthetic_A":1311,"synthetic_B":1690},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1011,"start":1005,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1026,"start":1009,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1029,"start":1024,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":262,"start":259,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":962,"start":955,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":614,"start":548,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":367,"start":275,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1273,"start":1157,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":143,"start":129,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1026,"start":1008,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":28},{"feature_index":1,"overlap_bases":26}],"query_bed":[582,610],"query_length":28,"union_overlap_bases":28},"family":"nested","fingerprint":"4dc2250afd21ff67862a758e1c36920345ccd594c857a3e0d3837e9ec4cf6187","group_id":"4dc2250afd21ff67862a758e1c36920345ccd594c857a3e0d3837e9ec4cf6187","id":"INTERVALS-0017761","index":17761,"input":{"contigs":{"synthetic_A":1431,"synthetic_B":953},"features":[{"basis":"one_closed","contig":"synthetic_A","end":615,"start":578,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":609,"start":584,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":203,"start":98,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":690,"start":678,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":442,"start":350,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1097,"start":996,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1370,"start":1285,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":353,"start":282,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":421,"start":365,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":958,"start":851,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":442,"start":370,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":610,"start":583,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":66},{"feature_index":2,"overlap_bases":2},{"feature_index":5,"overlap_bases":31},{"feature_index":9,"overlap_bases":67}],"query_bed":[356,423],"query_length":67,"union_overlap_bases":67},"family":"overlapping_blocks","fingerprint":"54aada10cbbac1e258ee64795648c45ff0a3f53d90f5f7b27ae1e0bce02972e9","group_id":"54aada10cbbac1e258ee64795648c45ff0a3f53d90f5f7b27ae1e0bce02972e9","id":"INTERVALS-0017762","index":17762,"input":{"contigs":{"synthetic_A":1377,"synthetic_B":720},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":359,"start":353,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":423,"start":358,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":426,"start":422,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":323,"start":279,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1019,"start":942,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":467,"start":393,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":609,"start":499,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":768,"start":751,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1064,"start":1034,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":450,"start":352,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":136,"start":52,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":423,"start":357,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":40},{"feature_index":2,"overlap_bases":2}],"query_bed":[681,722],"query_length":41,"union_overlap_bases":41},"family":"overlapping_blocks","fingerprint":"020e33ecc31b4a4d79d6652754dd7bfcccefcdb57283262dfce698d9aea69649","group_id":"020e33ecc31b4a4d79d6652754dd7bfcccefcdb57283262dfce698d9aea69649","id":"INTERVALS-0017772","index":17772,"input":{"contigs":{"synthetic_A":1324,"synthetic_B":1565},"features":[{"basis":"one_closed","contig":"synthetic_A","end":684,"start":679,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":722,"start":682,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":725,"start":720,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":704,"start":650,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":885,"start":838,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":574,"start":528,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":835,"start":768,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1098,"start":1055,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":722,"start":681,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[407,456],"query_length":49,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"3bce59d67abd0086c63675e35abc66d3debcf35ce822207b63e11e2b20f42859","group_id":"3bce59d67abd0086c63675e35abc66d3debcf35ce822207b63e11e2b20f42859","id":"INTERVALS-0017795","index":17795,"input":{"contigs":{"synthetic_A":1582,"synthetic_B":1271},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":407,"start":401,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":496,"start":457,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":521,"start":498,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":976,"start":969,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1405,"start":1394,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":206,"start":100,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":395,"start":374,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":35,"start":18,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":456,"start":407,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":34},{"feature_index":1,"overlap_bases":32},{"feature_index":11,"overlap_bases":28}],"query_bed":[154,188],"query_length":34,"union_overlap_bases":34},"family":"nested","fingerprint":"9f66d6801271396d1b74c8b2b8c2a8f7e3cca9aebc5de73d5c7bf7751251455b","group_id":"9f66d6801271396d1b74c8b2b8c2a8f7e3cca9aebc5de73d5c7bf7751251455b","id":"INTERVALS-0017796","index":17796,"input":{"contigs":{"synthetic_A":1191,"synthetic_B":1411},"features":[{"basis":"one_closed","contig":"synthetic_B","end":193,"start":150,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":187,"start":155,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":344,"start":297,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":32,"start":14,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":350,"start":257,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":501,"start":405,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":60,"start":16,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":557,"start":496,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1206,"start":1122,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":409,"start":399,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":632,"start":567,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":226,"start":160,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":188,"start":154,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":55},{"feature_index":2,"overlap_bases":2}],"query_bed":[698,754],"query_length":56,"union_overlap_bases":56},"family":"overlapping_blocks","fingerprint":"46cbe592fc1d81004faf40f844e86831a303052d01e7b886c7e9b6aa47687330","group_id":"46cbe592fc1d81004faf40f844e86831a303052d01e7b886c7e9b6aa47687330","id":"INTERVALS-0017797","index":17797,"input":{"contigs":{"synthetic_A":768,"synthetic_B":1001},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":701,"start":695,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":754,"start":700,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":757,"start":752,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":442,"start":347,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":674,"start":620,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":378,"start":377,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":146,"start":103,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":481,"start":383,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":513,"start":493,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":160,"start":149,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":491,"start":474,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":530,"start":456,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":754,"start":698,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":61},{"feature_index":1,"overlap_bases":59}],"query_bed":[799,860],"query_length":61,"union_overlap_bases":61},"family":"nested","fingerprint":"fc90ff7afac931ce27d316ec68a62971872bf3c0516e780f68b2ec79a9fef2f9","group_id":"fc90ff7afac931ce27d316ec68a62971872bf3c0516e780f68b2ec79a9fef2f9","id":"INTERVALS-0017801","index":17801,"input":{"contigs":{"synthetic_A":1214,"synthetic_B":1391},"features":[{"basis":"one_closed","contig":"synthetic_A","end":865,"start":795,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":859,"start":800,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":174,"start":65,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":518,"start":450,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":646,"start":603,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1160,"start":1130,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":860,"start":799,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[687,707],"query_length":20,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e3598d2efd9782e5551e0a2c57923f83fb9179a08337d8a0340c45aa68b59554","group_id":"e3598d2efd9782e5551e0a2c57923f83fb9179a08337d8a0340c45aa68b59554","id":"INTERVALS-0017810","index":17810,"input":{"contigs":{"synthetic_A":1479,"synthetic_B":1123},"features":[{"basis":"one_closed","contig":"synthetic_B","end":687,"start":676,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":729,"start":708,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":196,"start":104,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":459,"start":407,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1249,"start":1191,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":905,"start":824,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":311,"start":226,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":209,"start":135,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":934,"start":836,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":236,"start":132,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":642,"start":589,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":174,"start":101,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":707,"start":687,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[280,288],"query_length":8,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"0e173f44d63083389f7d78b4c076f90f405885154c2e3cc12a22b8275fb8aecb","group_id":"0e173f44d63083389f7d78b4c076f90f405885154c2e3cc12a22b8275fb8aecb","id":"INTERVALS-0017815","index":17815,"input":{"contigs":{"synthetic_A":1234,"synthetic_B":1668},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":280,"start":262,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":304,"start":289,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":657,"start":648,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1076,"start":1062,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1093,"start":1024,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":774,"start":693,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1565,"start":1502,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":452,"start":385,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":288,"start":281,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":34}],"query_bed":[558,592],"query_length":34,"union_overlap_bases":34},"family":"coordinate_conversion","fingerprint":"7fb1d9c08b399030b2573a4bef997625cb6c3426b9f31b13a49af3e5b3792ca7","group_id":"7fb1d9c08b399030b2573a4bef997625cb6c3426b9f31b13a49af3e5b3792ca7","id":"INTERVALS-0017824","index":17824,"input":{"contigs":{"synthetic_A":1589,"synthetic_B":779},"features":[{"basis":"one_closed","contig":"synthetic_B","end":592,"start":559,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":990,"start":900,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1096,"start":1001,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":440,"start":405,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":471,"start":452,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":627,"start":601,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":666,"start":624,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":592,"start":559,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":17}],"query_bed":[1083,1100],"query_length":17,"union_overlap_bases":17},"family":"stranded","fingerprint":"e73bd2d0950f790deee485ced92c3e340c561d1e9a895804187f74afe0539002","group_id":"e73bd2d0950f790deee485ced92c3e340c561d1e9a895804187f74afe0539002","id":"INTERVALS-0017828","index":17828,"input":{"contigs":{"synthetic_A":1312,"synthetic_B":849},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1100,"start":1083,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1100,"start":1083,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":207,"start":173,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":767,"start":669,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":634,"start":571,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":439,"start":382,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":778,"start":766,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":675,"start":627,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":603,"start":533,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1100,"start":1083,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":80},{"feature_index":1,"overlap_bases":78}],"query_bed":[453,533],"query_length":80,"union_overlap_bases":80},"family":"nested","fingerprint":"bf8c4cc44c2e2cb97ec9ead76b973da1cba0133b4a840b1f690894e1ac3022f6","group_id":"bf8c4cc44c2e2cb97ec9ead76b973da1cba0133b4a840b1f690894e1ac3022f6","id":"INTERVALS-0017836","index":17836,"input":{"contigs":{"synthetic_A":1646,"synthetic_B":688},"features":[{"basis":"one_closed","contig":"synthetic_B","end":538,"start":449,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":532,"start":454,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":169,"start":163,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":461,"start":425,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":90,"start":35,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":789,"start":767,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":73,"start":25,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":229,"start":184,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":367,"start":334,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":445,"start":370,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":384,"start":308,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":685,"start":675,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":533,"start":453,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":42},{"feature_index":2,"overlap_bases":2}],"query_bed":[653,696],"query_length":43,"union_overlap_bases":43},"family":"overlapping_blocks","fingerprint":"f98e7dc02259b7c01115f87821cc7afda23f58c85feff6f43e02f7b9dc44bbd0","group_id":"f98e7dc02259b7c01115f87821cc7afda23f58c85feff6f43e02f7b9dc44bbd0","id":"INTERVALS-0017837","index":17837,"input":{"contigs":{"synthetic_A":1735,"synthetic_B":1568},"features":[{"basis":"one_closed","contig":"synthetic_A","end":656,"start":651,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":696,"start":654,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":699,"start":695,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":436,"start":333,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":821,"start":719,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1653,"start":1559,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1078,"start":983,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1535,"start":1487,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":696,"start":654,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":25},{"feature_index":2,"overlap_bases":2}],"query_bed":[87,113],"query_length":26,"union_overlap_bases":26},"family":"overlapping_blocks","fingerprint":"65c5ac94d975a2baa6adbeb8fd4af16778597880843ec27894512fa2023a0047","group_id":"65c5ac94d975a2baa6adbeb8fd4af16778597880843ec27894512fa2023a0047","id":"INTERVALS-0017847","index":17847,"input":{"contigs":{"synthetic_A":750,"synthetic_B":721},"features":[{"basis":"one_closed","contig":"synthetic_A","end":90,"start":85,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":113,"start":88,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":116,"start":111,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":605,"start":520,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":629,"start":557,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":66,"start":8,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":228,"start":150,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":113,"start":88,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[352,410],"query_length":58,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"a48973842e190467dda640dfb5038934f73f6c87e57c9c6081465fdbfafaf858","group_id":"a48973842e190467dda640dfb5038934f73f6c87e57c9c6081465fdbfafaf858","id":"INTERVALS-0017890","index":17890,"input":{"contigs":{"synthetic_A":1022,"synthetic_B":1766},"features":[{"basis":"one_closed","contig":"synthetic_B","end":352,"start":338,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":413,"start":410,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":183,"start":114,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":713,"start":615,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":384,"start":301,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":609,"start":543,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1053,"start":1044,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":599,"start":500,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":410,"start":352,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":21}],"query_bed":[660,681],"query_length":21,"union_overlap_bases":21},"family":"coordinate_conversion","fingerprint":"773646a09ae602c8108fadba0816dd24f226afd5395f918d2a9c3c70da815edf","group_id":"773646a09ae602c8108fadba0816dd24f226afd5395f918d2a9c3c70da815edf","id":"INTERVALS-0017899","index":17899,"input":{"contigs":{"synthetic_A":924,"synthetic_B":1639},"features":[{"basis":"one_closed","contig":"synthetic_A","end":681,"start":661,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1014,"start":907,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":476,"start":438,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":142,"start":128,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":510,"start":483,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":522,"start":456,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1459,"start":1435,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":681,"start":661,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":38},{"feature_index":2,"overlap_bases":2}],"query_bed":[231,270],"query_length":39,"union_overlap_bases":39},"family":"overlapping_blocks","fingerprint":"0bc66b344b6d66114401213779b35b8bd7a6721f3afd2ba303bce232162ace06","group_id":"0bc66b344b6d66114401213779b35b8bd7a6721f3afd2ba303bce232162ace06","id":"INTERVALS-0017917","index":17917,"input":{"contigs":{"synthetic_A":1185,"synthetic_B":1547},"features":[{"basis":"one_closed","contig":"synthetic_A","end":234,"start":229,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":270,"start":233,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":273,"start":268,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":855,"start":823,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1247,"start":1142,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1034,"start":928,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":931,"start":830,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":198,"start":125,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":270,"start":231,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":35}],"query_bed":[681,716],"query_length":35,"union_overlap_bases":35},"family":"stranded","fingerprint":"2c6c2a18abbe9bad8cb9f8ebaf9feb6d5ab5d33b5cf63d4bfdf2cfc8f64e1efb","group_id":"2c6c2a18abbe9bad8cb9f8ebaf9feb6d5ab5d33b5cf63d4bfdf2cfc8f64e1efb","id":"INTERVALS-0017953","index":17953,"input":{"contigs":{"synthetic_A":1616,"synthetic_B":1174},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":716,"start":681,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":716,"start":682,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1021,"start":926,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":720,"start":651,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1072,"start":971,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":413,"start":301,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":763,"start":709,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":735,"start":662,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":716,"start":682,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":16},{"feature_index":1,"overlap_bases":14}],"query_bed":[91,107],"query_length":16,"union_overlap_bases":16},"family":"nested","fingerprint":"5d94db8af77e96c40dd7efbecb7298f0d43b30ba22ed1e8c1c527722c66ddd3f","group_id":"5d94db8af77e96c40dd7efbecb7298f0d43b30ba22ed1e8c1c527722c66ddd3f","id":"INTERVALS-0017956","index":17956,"input":{"contigs":{"synthetic_A":853,"synthetic_B":1029},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":112,"start":86,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":106,"start":93,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":744,"start":669,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":429,"start":327,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":481,"start":418,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":107,"start":92,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":68}],"query_bed":[332,400],"query_length":68,"union_overlap_bases":68},"family":"stranded","fingerprint":"28efd4d40def047fbbfa2f531ba26ae9a67e2547beb49fdee4199fb106577bec","group_id":"28efd4d40def047fbbfa2f531ba26ae9a67e2547beb49fdee4199fb106577bec","id":"INTERVALS-0017963","index":17963,"input":{"contigs":{"synthetic_A":798,"synthetic_B":958},"features":[{"basis":"one_closed","contig":"synthetic_A","end":400,"start":333,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":400,"start":332,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":320,"start":319,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":80,"start":3,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":180,"start":178,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":810,"start":703,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":400,"start":332,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":21},{"feature_index":1,"overlap_bases":19}],"query_bed":[696,717],"query_length":21,"union_overlap_bases":21},"family":"nested","fingerprint":"67c2d7927a959d4fbefc24a47bef77962b94ec4e72b41ff07af7570ce8b83a1a","group_id":"67c2d7927a959d4fbefc24a47bef77962b94ec4e72b41ff07af7570ce8b83a1a","id":"INTERVALS-0017971","index":17971,"input":{"contigs":{"synthetic_A":1495,"synthetic_B":1523},"features":[{"basis":"one_closed","contig":"synthetic_A","end":722,"start":692,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":716,"start":697,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":312,"start":196,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1246,"start":1148,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1243,"start":1178,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":271,"start":185,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1302,"start":1239,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":999,"start":899,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1056,"start":990,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1406,"start":1393,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":543,"start":486,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":717,"start":697,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":62},{"feature_index":3,"overlap_bases":23}],"query_bed":[301,363],"query_length":62,"union_overlap_bases":62},"family":"coordinate_conversion","fingerprint":"f9fec6d44115d93580686eabe3c8638246402cbd44793a9dcaedd9bdce4f14f2","group_id":"f9fec6d44115d93580686eabe3c8638246402cbd44793a9dcaedd9bdce4f14f2","id":"INTERVALS-0018004","index":18004,"input":{"contigs":{"synthetic_A":646,"synthetic_B":1176},"features":[{"basis":"one_closed","contig":"synthetic_A","end":363,"start":302,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":400,"start":376,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":884,"start":774,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":379,"start":341,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":258,"start":194,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":363,"start":302,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":45}],"query_bed":[495,540],"query_length":45,"union_overlap_bases":45},"family":"coordinate_conversion","fingerprint":"620f79fe75d8dca7c94f7f146cb892ffaf3814c5a95180198ed08f02a29c8f4f","group_id":"620f79fe75d8dca7c94f7f146cb892ffaf3814c5a95180198ed08f02a29c8f4f","id":"INTERVALS-0018009","index":18009,"input":{"contigs":{"synthetic_A":1346,"synthetic_B":1621},"features":[{"basis":"one_closed","contig":"synthetic_B","end":540,"start":496,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1313,"start":1197,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1007,"start":905,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1408,"start":1356,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1161,"start":1069,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":300,"start":236,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1203,"start":1171,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":172,"start":63,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1506,"start":1479,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":165,"start":131,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":916,"start":885,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":863,"start":813,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":540,"start":496,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[398,406],"query_length":8,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"6fdb380228dc0a66c2f525116fa22bffac36c4fbb8713727354d1c7d194e5b18","group_id":"6fdb380228dc0a66c2f525116fa22bffac36c4fbb8713727354d1c7d194e5b18","id":"INTERVALS-0018010","index":18010,"input":{"contigs":{"synthetic_A":985,"synthetic_B":822},"features":[{"basis":"one_closed","contig":"synthetic_B","end":398,"start":379,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":438,"start":406,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":103,"start":90,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":162,"start":47,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":402,"start":330,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":183,"start":104,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":406,"start":399,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":27},{"feature_index":2,"overlap_bases":2}],"query_bed":[201,229],"query_length":28,"union_overlap_bases":28},"family":"overlapping_blocks","fingerprint":"23651b646e371b25c877fa13cd9b1233da71bbc503962a9413240229c8e04e9f","group_id":"23651b646e371b25c877fa13cd9b1233da71bbc503962a9413240229c8e04e9f","id":"INTERVALS-0018012","index":18012,"input":{"contigs":{"synthetic_A":876,"synthetic_B":943},"features":[{"basis":"one_closed","contig":"synthetic_B","end":204,"start":199,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":229,"start":203,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":232,"start":227,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":453,"start":414,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":592,"start":479,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":246,"start":244,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":666,"start":616,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":200,"start":163,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":57,"start":34,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":431,"start":350,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":229,"start":201,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":10}],"query_bed":[37,47],"query_length":10,"union_overlap_bases":10},"family":"coordinate_conversion","fingerprint":"291a7a9ad1b35ee875b201d077c2c01ff0aec3eb22bd5a3ed76140e5f5e54ac2","group_id":"291a7a9ad1b35ee875b201d077c2c01ff0aec3eb22bd5a3ed76140e5f5e54ac2","id":"INTERVALS-0018014","index":18014,"input":{"contigs":{"synthetic_A":1227,"synthetic_B":1053},"features":[{"basis":"one_closed","contig":"synthetic_A","end":47,"start":38,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":787,"start":695,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":510,"start":478,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":396,"start":317,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":750,"start":722,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":47,"start":38,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":80}],"query_bed":[840,920],"query_length":80,"union_overlap_bases":80},"family":"stranded","fingerprint":"5723b546edf856f904cfdfb2c79b946904daea192bbc51b769638eda2fd52bf0","group_id":"5723b546edf856f904cfdfb2c79b946904daea192bbc51b769638eda2fd52bf0","id":"INTERVALS-0018018","index":18018,"input":{"contigs":{"synthetic_A":930,"synthetic_B":1383},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":920,"start":840,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":920,"start":841,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":63,"start":59,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":416,"start":415,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":301,"start":297,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":673,"start":661,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":435,"start":320,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":258,"start":167,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":920,"start":840,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":79},{"feature_index":2,"overlap_bases":2}],"query_bed":[234,314],"query_length":80,"union_overlap_bases":80},"family":"overlapping_blocks","fingerprint":"e9e8919e7ef2ba0d87525bcd1457a1504525e9aa745115bd1e510bd0c81ea746","group_id":"e9e8919e7ef2ba0d87525bcd1457a1504525e9aa745115bd1e510bd0c81ea746","id":"INTERVALS-0018022","index":18022,"input":{"contigs":{"synthetic_A":909,"synthetic_B":1382},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":237,"start":231,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":314,"start":235,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":317,"start":313,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":577,"start":568,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":608,"start":547,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":597,"start":512,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":432,"start":336,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":735,"start":653,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":314,"start":235,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":69}],"query_bed":[58,127],"query_length":69,"union_overlap_bases":69},"family":"stranded","fingerprint":"2eab27e8993bba98e01b015b9a4319828e1b19234716b8c391b06f087cfc0230","group_id":"2eab27e8993bba98e01b015b9a4319828e1b19234716b8c391b06f087cfc0230","id":"INTERVALS-0018023","index":18023,"input":{"contigs":{"synthetic_A":971,"synthetic_B":1141},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":127,"start":58,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":127,"start":59,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":287,"start":215,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":895,"start":790,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":515,"start":508,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1072,"start":1005,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":555,"start":458,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":656,"start":540,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":259,"start":148,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":61,"start":21,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":385,"start":323,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":127,"start":58,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[72,149],"query_length":77,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"161749d2daba1c3cf4b66dfcd6d0029d0f5b73012816305f6f1da5d8bb0b1aa0","group_id":"161749d2daba1c3cf4b66dfcd6d0029d0f5b73012816305f6f1da5d8bb0b1aa0","id":"INTERVALS-0018045","index":18045,"input":{"contigs":{"synthetic_A":1010,"synthetic_B":653},"features":[{"basis":"one_closed","contig":"synthetic_A","end":72,"start":57,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":186,"start":150,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":148,"start":130,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":210,"start":183,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":231,"start":195,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":48,"start":7,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":897,"start":791,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":149,"start":73,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":31}],"query_bed":[998,1029],"query_length":31,"union_overlap_bases":31},"family":"coordinate_conversion","fingerprint":"78f5897e39f9e0b74f2585a7b63db4acadacbb8a561641120c5226fb86976e00","group_id":"78f5897e39f9e0b74f2585a7b63db4acadacbb8a561641120c5226fb86976e00","id":"INTERVALS-0018064","index":18064,"input":{"contigs":{"synthetic_A":1684,"synthetic_B":1615},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1029,"start":999,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1625,"start":1523,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":645,"start":548,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1117,"start":1109,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1373,"start":1295,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":488,"start":377,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1029,"start":999,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":13}],"query_bed":[50,63],"query_length":13,"union_overlap_bases":13},"family":"coordinate_conversion","fingerprint":"7fd470484be2f760ec2e1de7d85bed3ff84bffad8947b00e91484e9be477295c","group_id":"7fd470484be2f760ec2e1de7d85bed3ff84bffad8947b00e91484e9be477295c","id":"INTERVALS-0018069","index":18069,"input":{"contigs":{"synthetic_A":652,"synthetic_B":1764},"features":[{"basis":"one_closed","contig":"synthetic_B","end":63,"start":51,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":369,"start":295,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":181,"start":179,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1710,"start":1633,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":413,"start":310,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1332,"start":1263,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":321,"start":243,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":281,"start":265,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":579,"start":462,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1405,"start":1379,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":151,"start":99,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":63,"start":51,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":21}],"query_bed":[835,856],"query_length":21,"union_overlap_bases":21},"family":"stranded","fingerprint":"0a7b506ee8d92ed7002cdb8e211e8a23942afb2e49b7d2d196cd0aeba86709f0","group_id":"0a7b506ee8d92ed7002cdb8e211e8a23942afb2e49b7d2d196cd0aeba86709f0","id":"INTERVALS-0018088","index":18088,"input":{"contigs":{"synthetic_A":1358,"synthetic_B":1010},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":856,"start":835,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":856,"start":836,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":268,"start":180,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":355,"start":332,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":533,"start":416,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":789,"start":695,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":921,"start":879,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":783,"start":681,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":856,"start":835,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":21}],"query_bed":[445,466],"query_length":21,"union_overlap_bases":21},"family":"coordinate_conversion","fingerprint":"1a5eddb61f7e00e733027e2c7eface6f7ad44c0acf02f84683f92e18c873cd60","group_id":"1a5eddb61f7e00e733027e2c7eface6f7ad44c0acf02f84683f92e18c873cd60","id":"INTERVALS-0018109","index":18109,"input":{"contigs":{"synthetic_A":1324,"synthetic_B":710},"features":[{"basis":"one_closed","contig":"synthetic_A","end":466,"start":446,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":508,"start":471,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":135,"start":89,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":313,"start":251,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":102,"start":16,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":685,"start":578,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":849,"start":839,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":618,"start":505,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":497,"start":457,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":385,"start":312,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":297,"start":272,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":466,"start":446,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":13},{"feature_index":2,"overlap_bases":2}],"query_bed":[305,319],"query_length":14,"union_overlap_bases":14},"family":"overlapping_blocks","fingerprint":"5f960b3e844afc1e4f5da299dcfad7c9d1e002db07412ecfc95bba9c57366c84","group_id":"5f960b3e844afc1e4f5da299dcfad7c9d1e002db07412ecfc95bba9c57366c84","id":"INTERVALS-0018137","index":18137,"input":{"contigs":{"synthetic_A":757,"synthetic_B":1671},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":308,"start":302,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":319,"start":307,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":322,"start":317,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":166,"start":69,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":606,"start":563,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":282,"start":253,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":319,"start":306,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[822,851],"query_length":29,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"ca882990045dd8b9818244fc5d567b35618353a6f8142dee3486eb43f591e470","group_id":"ca882990045dd8b9818244fc5d567b35618353a6f8142dee3486eb43f591e470","id":"INTERVALS-0018145","index":18145,"input":{"contigs":{"synthetic_A":845,"synthetic_B":1334},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":822,"start":802,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":886,"start":852,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":870,"start":867,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":161,"start":147,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":176,"start":90,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":452,"start":349,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1090,"start":1067,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":87,"start":40,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1014,"start":895,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":851,"start":823,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":70},{"feature_index":1,"overlap_bases":68}],"query_bed":[379,449],"query_length":70,"union_overlap_bases":70},"family":"nested","fingerprint":"a17164aec1f1e67e880df60401d65d5ea3c927e6abc4a34fde75b2c5f285c06c","group_id":"a17164aec1f1e67e880df60401d65d5ea3c927e6abc4a34fde75b2c5f285c06c","id":"INTERVALS-0018151","index":18151,"input":{"contigs":{"synthetic_A":1049,"synthetic_B":1095},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":454,"start":374,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":448,"start":381,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":151,"start":104,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":950,"start":855,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":916,"start":876,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":878,"start":876,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":147,"start":97,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":585,"start":558,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":820,"start":745,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":764,"start":699,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":497,"start":485,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":449,"start":380,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":28}],"query_bed":[331,359],"query_length":28,"union_overlap_bases":28},"family":"stranded","fingerprint":"527e43f8012969e915d358be2991166a88d7db336b471f4d38dcc127f542c0b7","group_id":"527e43f8012969e915d358be2991166a88d7db336b471f4d38dcc127f542c0b7","id":"INTERVALS-0018153","index":18153,"input":{"contigs":{"synthetic_A":1578,"synthetic_B":1148},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":359,"start":331,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":359,"start":332,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":604,"start":603,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1386,"start":1377,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":706,"start":647,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":788,"start":713,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":344,"start":232,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1166,"start":1112,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1427,"start":1366,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":629,"start":511,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":867,"start":842,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":359,"start":331,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":30}],"query_bed":[103,133],"query_length":30,"union_overlap_bases":30},"family":"stranded","fingerprint":"5ac53ddc18a21bea7cef07cc671424bdd42d1295a4519f9755e406681c7a7969","group_id":"5ac53ddc18a21bea7cef07cc671424bdd42d1295a4519f9755e406681c7a7969","id":"INTERVALS-0018158","index":18158,"input":{"contigs":{"synthetic_A":1152,"synthetic_B":630},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":133,"start":103,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":133,"start":103,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":904,"start":790,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":565,"start":492,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1108,"start":1021,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":350,"start":238,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":107,"start":46,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":473,"start":354,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":506,"start":470,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":379,"start":337,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1103,"start":1017,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":500,"start":435,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":133,"start":103,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[479,530],"query_length":51,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e2d6e7de513073f68e8f0c136e51eeaec3173c60198e2dd10790ca077c436d3f","group_id":"e2d6e7de513073f68e8f0c136e51eeaec3173c60198e2dd10790ca077c436d3f","id":"INTERVALS-0018160","index":18160,"input":{"contigs":{"synthetic_A":1391,"synthetic_B":1151},"features":[{"basis":"one_closed","contig":"synthetic_A","end":479,"start":474,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":565,"start":531,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":284,"start":167,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":359,"start":264,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":640,"start":559,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":971,"start":897,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":747,"start":700,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":530,"start":479,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":5}],"query_bed":[509,514],"query_length":5,"union_overlap_bases":5},"family":"stranded","fingerprint":"caa7261a186cdb69bdb058f8e223af6be145d64f8173475622907e9945dd1006","group_id":"caa7261a186cdb69bdb058f8e223af6be145d64f8173475622907e9945dd1006","id":"INTERVALS-0018163","index":18163,"input":{"contigs":{"synthetic_A":744,"synthetic_B":976},"features":[{"basis":"one_closed","contig":"synthetic_B","end":514,"start":510,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":514,"start":510,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":417,"start":386,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":372,"start":273,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":600,"start":592,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":165,"start":65,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":694,"start":580,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":722,"start":694,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":314,"start":215,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":514,"start":509,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":74}],"query_bed":[137,211],"query_length":74,"union_overlap_bases":74},"family":"coordinate_conversion","fingerprint":"cd8e56aa79c4a9b8fedcdec88273cdda3f1396bff592cdfca37a4f5778dec5b9","group_id":"cd8e56aa79c4a9b8fedcdec88273cdda3f1396bff592cdfca37a4f5778dec5b9","id":"INTERVALS-0018179","index":18179,"input":{"contigs":{"synthetic_A":1094,"synthetic_B":1370},"features":[{"basis":"one_closed","contig":"synthetic_A","end":211,"start":138,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":599,"start":490,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":306,"start":303,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1256,"start":1189,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":372,"start":278,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1254,"start":1168,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":746,"start":642,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1306,"start":1246,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":211,"start":138,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":40}],"query_bed":[363,403],"query_length":40,"union_overlap_bases":40},"family":"coordinate_conversion","fingerprint":"3da8c2e6a816023132a19e33ec9e1bc25c64874c7ca04f347beff5ffb748da68","group_id":"3da8c2e6a816023132a19e33ec9e1bc25c64874c7ca04f347beff5ffb748da68","id":"INTERVALS-0018194","index":18194,"input":{"contigs":{"synthetic_A":780,"synthetic_B":641},"features":[{"basis":"one_closed","contig":"synthetic_B","end":403,"start":364,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":585,"start":498,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":263,"start":216,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":422,"start":376,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":460,"start":459,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":469,"start":387,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":186,"start":184,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":403,"start":364,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[767,843],"query_length":76,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"7384405c0890fa5a4db35edc79b7ec19deea3692cbfa62e3689be5ac276a78fc","group_id":"7384405c0890fa5a4db35edc79b7ec19deea3692cbfa62e3689be5ac276a78fc","id":"INTERVALS-0018210","index":18210,"input":{"contigs":{"synthetic_A":1509,"synthetic_B":1065},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":767,"start":762,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":857,"start":843,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":231,"start":190,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":336,"start":256,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":912,"start":807,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":843,"start":767,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":3,"overlap_bases":16}],"query_bed":[279,352],"query_length":73,"union_overlap_bases":16},"family":"touching_boundary","fingerprint":"c81e1318f8a32f0b17fcb6a16e36810a2e59a2799eef42ef7e60e78266cb18d4","group_id":"c81e1318f8a32f0b17fcb6a16e36810a2e59a2799eef42ef7e60e78266cb18d4","id":"INTERVALS-0018215","index":18215,"input":{"contigs":{"synthetic_A":1187,"synthetic_B":847},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":279,"start":265,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":380,"start":353,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":491,"start":450,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":295,"start":211,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":745,"start":745,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":352,"start":280,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":24}],"query_bed":[1139,1163],"query_length":24,"union_overlap_bases":24},"family":"coordinate_conversion","fingerprint":"dbf071d816932abe5ab105a55a9b9e835dc01da85f92cd7a3e540dd3e8ade167","group_id":"dbf071d816932abe5ab105a55a9b9e835dc01da85f92cd7a3e540dd3e8ade167","id":"INTERVALS-0018224","index":18224,"input":{"contigs":{"synthetic_A":900,"synthetic_B":1791},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1163,"start":1140,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":383,"start":303,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":334,"start":296,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":177,"start":88,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":820,"start":739,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":613,"start":590,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1349,"start":1302,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":187,"start":150,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":845,"start":772,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1386,"start":1367,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1163,"start":1140,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":54}],"query_bed":[241,295],"query_length":54,"union_overlap_bases":54},"family":"coordinate_conversion","fingerprint":"e673e20ccdce76cf1ac62f839df3601f82f5a7d6cf504695d604b3893af95cb3","group_id":"e673e20ccdce76cf1ac62f839df3601f82f5a7d6cf504695d604b3893af95cb3","id":"INTERVALS-0018249","index":18249,"input":{"contigs":{"synthetic_A":1315,"synthetic_B":1321},"features":[{"basis":"one_closed","contig":"synthetic_B","end":295,"start":242,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":583,"start":576,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1194,"start":1187,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1127,"start":1025,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":961,"start":948,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":408,"start":300,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":657,"start":598,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1041,"start":1017,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":866,"start":751,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":102,"start":69,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":770,"start":768,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":295,"start":242,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56},{"feature_index":1,"overlap_bases":54},{"feature_index":3,"overlap_bases":27}],"query_bed":[166,222],"query_length":56,"union_overlap_bases":56},"family":"nested","fingerprint":"ef82444c54c36a1b788729287a02915284789ac73121865d832e653e736ae178","group_id":"ef82444c54c36a1b788729287a02915284789ac73121865d832e653e736ae178","id":"INTERVALS-0018256","index":18256,"input":{"contigs":{"synthetic_A":872,"synthetic_B":1118},"features":[{"basis":"one_closed","contig":"synthetic_A","end":227,"start":162,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":221,"start":167,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":325,"start":318,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":193,"start":79,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":269,"start":159,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":715,"start":707,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":65,"start":44,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":781,"start":663,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":365,"start":263,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":230,"start":153,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":696,"start":615,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":543,"start":482,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":222,"start":166,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":64},{"feature_index":2,"overlap_bases":2}],"query_bed":[801,866],"query_length":65,"union_overlap_bases":65},"family":"overlapping_blocks","fingerprint":"51356df09465561daa2fb7f385b08a8e76afb82c25d02545a57ec3939017ee32","group_id":"51356df09465561daa2fb7f385b08a8e76afb82c25d02545a57ec3939017ee32","id":"INTERVALS-0018262","index":18262,"input":{"contigs":{"synthetic_A":1224,"synthetic_B":1483},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":804,"start":798,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":866,"start":802,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":869,"start":864,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":152,"start":94,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":788,"start":741,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1322,"start":1235,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":967,"start":848,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":866,"start":801,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[65,107],"query_length":42,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"9945e944f5748aca5a2e0cdf84015284c2f6350d93fc9210567f4f96898aceff","group_id":"9945e944f5748aca5a2e0cdf84015284c2f6350d93fc9210567f4f96898aceff","id":"INTERVALS-0018265","index":18265,"input":{"contigs":{"synthetic_A":650,"synthetic_B":1582},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":65,"start":59,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":111,"start":107,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1492,"start":1379,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":697,"start":696,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":204,"start":168,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":149,"start":40,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":107,"start":66,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":16},{"feature_index":2,"overlap_bases":2}],"query_bed":[446,463],"query_length":17,"union_overlap_bases":17},"family":"overlapping_blocks","fingerprint":"b00d4ff032e74521714245fe8718e1f222aabc0b8a46d429908d236b82254b1a","group_id":"b00d4ff032e74521714245fe8718e1f222aabc0b8a46d429908d236b82254b1a","id":"INTERVALS-0018272","index":18272,"input":{"contigs":{"synthetic_A":922,"synthetic_B":1794},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":449,"start":443,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":463,"start":447,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":466,"start":462,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":377,"start":322,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":381,"start":364,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1591,"start":1484,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":469,"start":354,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":582,"start":557,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":790,"start":738,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":463,"start":447,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":56},{"feature_index":2,"overlap_bases":2}],"query_bed":[21,78],"query_length":57,"union_overlap_bases":57},"family":"overlapping_blocks","fingerprint":"76da17d6a457b07a5b10121b37cd8e7523d41834fcae914c99d4552ccc5e3dd2","group_id":"76da17d6a457b07a5b10121b37cd8e7523d41834fcae914c99d4552ccc5e3dd2","id":"INTERVALS-0018282","index":18282,"input":{"contigs":{"synthetic_A":933,"synthetic_B":1172},"features":[{"basis":"one_closed","contig":"synthetic_B","end":24,"start":19,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":78,"start":22,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":81,"start":77,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":715,"start":608,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":782,"start":731,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":390,"start":287,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":240,"start":143,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":78,"start":21,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":5},{"feature_index":2,"overlap_bases":2}],"query_bed":[994,1000],"query_length":6,"union_overlap_bases":6},"family":"overlapping_blocks","fingerprint":"04ad7ccac90248b6bba368046d713b3914e01e3bcb1be8b2822c7adf248e552f","group_id":"04ad7ccac90248b6bba368046d713b3914e01e3bcb1be8b2822c7adf248e552f","id":"INTERVALS-0018302","index":18302,"input":{"contigs":{"synthetic_A":872,"synthetic_B":1763},"features":[{"basis":"one_closed","contig":"synthetic_B","end":997,"start":992,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1000,"start":995,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1003,"start":998,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":781,"start":752,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1334,"start":1229,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":421,"start":329,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1457,"start":1386,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":151,"start":51,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1455,"start":1373,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1000,"start":994,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":61}],"query_bed":[554,615],"query_length":61,"union_overlap_bases":61},"family":"stranded","fingerprint":"2fe4187270a57b6773e9bac43afa2e8cc31cd371f341018d3de24edea9e34030","group_id":"2fe4187270a57b6773e9bac43afa2e8cc31cd371f341018d3de24edea9e34030","id":"INTERVALS-0018308","index":18308,"input":{"contigs":{"synthetic_A":1009,"synthetic_B":774},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":615,"start":554,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":615,"start":554,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":920,"start":879,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":463,"start":357,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":163,"start":147,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":434,"start":342,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":465,"start":402,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":871,"start":822,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":370,"start":266,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":752,"start":663,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":615,"start":554,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[944,1019],"query_length":75,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"cd2ad1667a753b1898c67e99096f9baf0a0a3b36a639ad2be12e1b86bb89d52d","group_id":"cd2ad1667a753b1898c67e99096f9baf0a0a3b36a639ad2be12e1b86bb89d52d","id":"INTERVALS-0018310","index":18310,"input":{"contigs":{"synthetic_A":1509,"synthetic_B":1725},"features":[{"basis":"one_closed","contig":"synthetic_A","end":944,"start":930,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1037,"start":1020,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":370,"start":347,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":565,"start":449,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1551,"start":1529,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":88,"start":48,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":477,"start":384,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":328,"start":229,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1626,"start":1508,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1019,"start":944,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":32}],"query_bed":[673,705],"query_length":32,"union_overlap_bases":32},"family":"stranded","fingerprint":"402f71544cd57708726f80bc8913543f2040d08c2e393d4bb30bc98f13e2d924","group_id":"402f71544cd57708726f80bc8913543f2040d08c2e393d4bb30bc98f13e2d924","id":"INTERVALS-0018318","index":18318,"input":{"contigs":{"synthetic_A":1189,"synthetic_B":1573},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":705,"start":673,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":705,"start":674,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1083,"start":1034,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":94,"start":18,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":902,"start":902,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":705,"start":674,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":22}],"query_bed":[364,386],"query_length":22,"union_overlap_bases":22},"family":"coordinate_conversion","fingerprint":"ef7daf7c3deb5da42fe9345bae5b0fd9f1ac2b92425f0774be86da677564a3cc","group_id":"ef7daf7c3deb5da42fe9345bae5b0fd9f1ac2b92425f0774be86da677564a3cc","id":"INTERVALS-0018324","index":18324,"input":{"contigs":{"synthetic_A":649,"synthetic_B":1094},"features":[{"basis":"one_closed","contig":"synthetic_A","end":386,"start":365,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":711,"start":696,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":59,"start":15,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":343,"start":269,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":559,"start":502,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":880,"start":807,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":394,"start":283,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":109,"start":101,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":137,"start":137,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":447,"start":387,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":386,"start":365,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":64},{"feature_index":4,"overlap_bases":48}],"query_bed":[180,244],"query_length":64,"union_overlap_bases":64},"family":"coordinate_conversion","fingerprint":"964becf20d3c47c0dd617961b6fc7888c660fea676bd1fe6780da8535af1a93a","group_id":"964becf20d3c47c0dd617961b6fc7888c660fea676bd1fe6780da8535af1a93a","id":"INTERVALS-0018339","index":18339,"input":{"contigs":{"synthetic_A":732,"synthetic_B":1475},"features":[{"basis":"one_closed","contig":"synthetic_A","end":244,"start":181,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":414,"start":332,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1076,"start":988,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":542,"start":514,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":228,"start":129,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1406,"start":1324,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":244,"start":181,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":20},{"feature_index":1,"overlap_bases":18}],"query_bed":[280,300],"query_length":20,"union_overlap_bases":20},"family":"nested","fingerprint":"f0999826cb5bf558b27da638568dfd0e29365adf6075737ba0f2d989f6a23f86","group_id":"f0999826cb5bf558b27da638568dfd0e29365adf6075737ba0f2d989f6a23f86","id":"INTERVALS-0018341","index":18341,"input":{"contigs":{"synthetic_A":1276,"synthetic_B":1295},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":305,"start":275,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":299,"start":282,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":556,"start":477,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":246,"start":218,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1106,"start":1063,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1068,"start":1050,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":296,"start":289,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":264,"start":230,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1083,"start":997,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":933,"start":859,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1111,"start":1010,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":300,"start":280,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":15},{"feature_index":2,"overlap_bases":2}],"query_bed":[123,139],"query_length":16,"union_overlap_bases":16},"family":"overlapping_blocks","fingerprint":"abdac0c0ee2b83fb0940869e6439b1a5876ae368839eca443fc1adfca799f7ea","group_id":"abdac0c0ee2b83fb0940869e6439b1a5876ae368839eca443fc1adfca799f7ea","id":"INTERVALS-0018362","index":18362,"input":{"contigs":{"synthetic_A":1480,"synthetic_B":1230},"features":[{"basis":"one_closed","contig":"synthetic_A","end":126,"start":121,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":139,"start":124,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":142,"start":138,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1087,"start":1062,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1199,"start":1106,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":198,"start":100,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":398,"start":387,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":986,"start":966,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":311,"start":297,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":139,"start":124,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[330,345],"query_length":15,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e7ac350c5fa41d2cc0a53791185126792e1307a7ddfeabebe11cd50be97e5ec1","group_id":"e7ac350c5fa41d2cc0a53791185126792e1307a7ddfeabebe11cd50be97e5ec1","id":"INTERVALS-0018365","index":18365,"input":{"contigs":{"synthetic_A":1559,"synthetic_B":1709},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":330,"start":322,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":362,"start":346,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1514,"start":1421,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1169,"start":1060,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":921,"start":807,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":855,"start":840,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1256,"start":1196,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1404,"start":1330,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":838,"start":798,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":672,"start":646,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1521,"start":1486,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1450,"start":1444,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":345,"start":331,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":33},{"feature_index":2,"overlap_bases":2},{"feature_index":11,"overlap_bases":34}],"query_bed":[134,168],"query_length":34,"union_overlap_bases":34},"family":"overlapping_blocks","fingerprint":"104434f2f76aa2d294223a0ac3e73b39b9e0680e2d86c60b6b9e0aa24b2403a7","group_id":"104434f2f76aa2d294223a0ac3e73b39b9e0680e2d86c60b6b9e0aa24b2403a7","id":"INTERVALS-0018387","index":18387,"input":{"contigs":{"synthetic_A":1055,"synthetic_B":793},"features":[{"basis":"one_closed","contig":"synthetic_A","end":137,"start":132,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":168,"start":136,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":171,"start":166,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":79,"start":79,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":227,"start":124,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":777,"start":732,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":380,"start":335,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":774,"start":671,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":298,"start":257,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":182,"start":168,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":57,"start":28,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":169,"start":95,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":168,"start":135,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":75}],"query_bed":[609,684],"query_length":75,"union_overlap_bases":75},"family":"coordinate_conversion","fingerprint":"2b29db647d96eb8836eecf1e77f13462f89ad7f8292e744305fb34399f7e2be0","group_id":"2b29db647d96eb8836eecf1e77f13462f89ad7f8292e744305fb34399f7e2be0","id":"INTERVALS-0018389","index":18389,"input":{"contigs":{"synthetic_A":1210,"synthetic_B":1694},"features":[{"basis":"one_closed","contig":"synthetic_B","end":684,"start":610,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1171,"start":1130,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1289,"start":1193,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":76,"start":66,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1329,"start":1236,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":365,"start":343,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":414,"start":325,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":273,"start":163,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":213,"start":123,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":520,"start":459,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":518,"start":469,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":166,"start":159,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":684,"start":610,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":17}],"query_bed":[219,236],"query_length":17,"union_overlap_bases":17},"family":"stranded","fingerprint":"69ad0e423d7297108457001667bd8c2dbe301da0e55b8500361a47f9cf1cea49","group_id":"69ad0e423d7297108457001667bd8c2dbe301da0e55b8500361a47f9cf1cea49","id":"INTERVALS-0018398","index":18398,"input":{"contigs":{"synthetic_A":845,"synthetic_B":1047},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":236,"start":219,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":236,"start":220,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1011,"start":919,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":896,"start":895,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":78,"start":60,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":445,"start":390,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":598,"start":545,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":634,"start":557,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":283,"start":178,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":236,"start":220,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":43},{"feature_index":2,"overlap_bases":2}],"query_bed":[524,568],"query_length":44,"union_overlap_bases":44},"family":"overlapping_blocks","fingerprint":"3f4fb2446fd05b99bfde75c58c670f45dca5ef813325915ba0892d2ac049cb93","group_id":"3f4fb2446fd05b99bfde75c58c670f45dca5ef813325915ba0892d2ac049cb93","id":"INTERVALS-0018402","index":18402,"input":{"contigs":{"synthetic_A":920,"synthetic_B":1321},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":527,"start":521,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":568,"start":525,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":571,"start":567,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":944,"start":869,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":659,"start":587,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":153,"start":136,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1106,"start":1032,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":722,"start":617,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":302,"start":241,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":568,"start":524,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":24},{"feature_index":1,"overlap_bases":22}],"query_bed":[500,524],"query_length":24,"union_overlap_bases":24},"family":"nested","fingerprint":"c37afd6c3eb02e3c1152c8a3cf66a931153a63fa71da1c0cd20889046e1227af","group_id":"c37afd6c3eb02e3c1152c8a3cf66a931153a63fa71da1c0cd20889046e1227af","id":"INTERVALS-0018411","index":18411,"input":{"contigs":{"synthetic_A":912,"synthetic_B":1008},"features":[{"basis":"one_closed","contig":"synthetic_B","end":529,"start":496,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":523,"start":501,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":63,"start":13,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":835,"start":800,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":82,"start":40,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":384,"start":355,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":692,"start":683,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":524,"start":501,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":42},{"feature_index":7,"overlap_bases":23}],"query_bed":[1116,1158],"query_length":42,"union_overlap_bases":42},"family":"coordinate_conversion","fingerprint":"64196e628eab535408b02cdc82738a793b3f5a2e30952931e9d44edccafb4435","group_id":"64196e628eab535408b02cdc82738a793b3f5a2e30952931e9d44edccafb4435","id":"INTERVALS-0018429","index":18429,"input":{"contigs":{"synthetic_A":1320,"synthetic_B":1705},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1158,"start":1117,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":453,"start":440,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":199,"start":117,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":686,"start":602,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":390,"start":312,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":752,"start":660,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":169,"start":52,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1172,"start":1136,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1562,"start":1474,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1337,"start":1243,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1158,"start":1117,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":17},{"feature_index":1,"overlap_bases":15}],"query_bed":[1183,1200],"query_length":17,"union_overlap_bases":17},"family":"nested","fingerprint":"4c1f720cd4f7e420f5b928dbcfdcada29127aff24e4da045276746ec8b50085a","group_id":"4c1f720cd4f7e420f5b928dbcfdcada29127aff24e4da045276746ec8b50085a","id":"INTERVALS-0018446","index":18446,"input":{"contigs":{"synthetic_A":1521,"synthetic_B":1286},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1205,"start":1179,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1199,"start":1185,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":862,"start":773,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":645,"start":611,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":340,"start":298,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":795,"start":677,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1431,"start":1389,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1200,"start":1184,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":78}],"query_bed":[830,908],"query_length":78,"union_overlap_bases":78},"family":"coordinate_conversion","fingerprint":"915a2222f3a84442337f398bd0b5a0d78e9a0b71b45101c1f25f3fe7004d8b30","group_id":"915a2222f3a84442337f398bd0b5a0d78e9a0b71b45101c1f25f3fe7004d8b30","id":"INTERVALS-0018449","index":18449,"input":{"contigs":{"synthetic_A":1205,"synthetic_B":1502},"features":[{"basis":"one_closed","contig":"synthetic_B","end":908,"start":831,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1130,"start":1054,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1035,"start":978,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":140,"start":132,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1132,"start":1053,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":104,"start":2,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":782,"start":742,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1239,"start":1152,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":733,"start":624,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":242,"start":211,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":908,"start":831,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":2,"overlap_bases":11}],"query_bed":[948,959],"query_length":11,"union_overlap_bases":11},"family":"touching_boundary","fingerprint":"3812cc28c76181ef0d1d385ccbaec3a2544038f1682427b69d019d34b6c97f86","group_id":"3812cc28c76181ef0d1d385ccbaec3a2544038f1682427b69d019d34b6c97f86","id":"INTERVALS-0018450","index":18450,"input":{"contigs":{"synthetic_A":1677,"synthetic_B":742},"features":[{"basis":"one_closed","contig":"synthetic_A","end":948,"start":942,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":999,"start":960,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":979,"start":876,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":363,"start":272,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":817,"start":783,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":636,"start":519,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1094,"start":1056,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":148,"start":94,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":959,"start":948,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":65},{"feature_index":1,"overlap_bases":63},{"feature_index":4,"overlap_bases":16}],"query_bed":[527,592],"query_length":65,"union_overlap_bases":65},"family":"nested","fingerprint":"f2fbaff0d66c573bdcf9991696400494266b6d50b97142b8694db715b6f0fa3f","group_id":"f2fbaff0d66c573bdcf9991696400494266b6d50b97142b8694db715b6f0fa3f","id":"INTERVALS-0018456","index":18456,"input":{"contigs":{"synthetic_A":960,"synthetic_B":642},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":597,"start":522,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":591,"start":529,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":317,"start":216,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":366,"start":270,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":543,"start":513,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":264,"start":176,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":70,"start":25,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":220,"start":171,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":23,"start":10,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":318,"start":290,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":298,"start":276,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":592,"start":527,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":7},{"feature_index":1,"overlap_bases":5}],"query_bed":[173,180],"query_length":7,"union_overlap_bases":7},"family":"nested","fingerprint":"0f25dc423f1e5423af80d0a3372027eab3d1d74f0024c90b9e0220bb55360b87","group_id":"0f25dc423f1e5423af80d0a3372027eab3d1d74f0024c90b9e0220bb55360b87","id":"INTERVALS-0018461","index":18461,"input":{"contigs":{"synthetic_A":617,"synthetic_B":875},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":185,"start":168,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":179,"start":175,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":79,"start":2,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":502,"start":494,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":452,"start":337,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":421,"start":319,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":180,"start":174,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[396,459],"query_length":63,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"eae0a8b63fe5f90d65d60ba5a1610092e4e7f04776f305160cfdbedf240d2f12","group_id":"eae0a8b63fe5f90d65d60ba5a1610092e4e7f04776f305160cfdbedf240d2f12","id":"INTERVALS-0018475","index":18475,"input":{"contigs":{"synthetic_A":752,"synthetic_B":1354},"features":[{"basis":"one_closed","contig":"synthetic_B","end":396,"start":386,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":498,"start":460,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":304,"start":283,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":359,"start":244,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":333,"start":285,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":69,"start":9,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":536,"start":464,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":354,"start":268,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":459,"start":397,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":8},{"feature_index":2,"overlap_bases":2}],"query_bed":[1014,1023],"query_length":9,"union_overlap_bases":9},"family":"overlapping_blocks","fingerprint":"c2f55ef0a625aa542675a2c7ff7f2a76213997ece0f963221e5533f9bca6931b","group_id":"c2f55ef0a625aa542675a2c7ff7f2a76213997ece0f963221e5533f9bca6931b","id":"INTERVALS-0018477","index":18477,"input":{"contigs":{"synthetic_A":1382,"synthetic_B":1524},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1017,"start":1011,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1023,"start":1015,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1026,"start":1021,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1390,"start":1280,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":92,"start":78,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":583,"start":550,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":359,"start":301,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1293,"start":1210,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1023,"start":1015,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":46},{"feature_index":2,"overlap_bases":2},{"feature_index":7,"overlap_bases":24}],"query_bed":[668,715],"query_length":47,"union_overlap_bases":47},"family":"overlapping_blocks","fingerprint":"392b01705d8003a9dd3140f1c3b3cce7cc84e265b8500bb33690266dfc123499","group_id":"392b01705d8003a9dd3140f1c3b3cce7cc84e265b8500bb33690266dfc123499","id":"INTERVALS-0018502","index":18502,"input":{"contigs":{"synthetic_A":1450,"synthetic_B":1679},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":671,"start":665,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":715,"start":670,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":718,"start":714,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":69,"start":14,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":291,"start":234,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":404,"start":367,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1424,"start":1325,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":692,"start":619,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":273,"start":246,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1092,"start":1048,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":715,"start":668,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":7,"overlap_bases":29}],"query_bed":[813,867],"query_length":54,"union_overlap_bases":29},"family":"touching_boundary","fingerprint":"a69f1deafb9e9126f55890918cf06b7f202eb1dd7865eb9a40d855a8abd9a212","group_id":"a69f1deafb9e9126f55890918cf06b7f202eb1dd7865eb9a40d855a8abd9a212","id":"INTERVALS-0018520","index":18520,"input":{"contigs":{"synthetic_A":1298,"synthetic_B":1501},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":813,"start":806,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":888,"start":867,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1121,"start":1071,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":518,"start":477,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":372,"start":282,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":568,"start":461,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":82,"start":46,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":948,"start":839,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":801,"start":729,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":149,"start":142,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":473,"start":469,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":867,"start":814,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":76},{"feature_index":1,"overlap_bases":74}],"query_bed":[1045,1121],"query_length":76,"union_overlap_bases":76},"family":"nested","fingerprint":"24e44b866b0d7121a427ad2624a293763dd131e45d09efc337b00dcbc3732917","group_id":"24e44b866b0d7121a427ad2624a293763dd131e45d09efc337b00dcbc3732917","id":"INTERVALS-0018531","index":18531,"input":{"contigs":{"synthetic_A":604,"synthetic_B":1746},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1126,"start":1041,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1120,"start":1047,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":757,"start":710,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1033,"start":964,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1446,"start":1356,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":932,"start":886,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":198,"start":89,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":474,"start":364,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":127,"start":119,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":513,"start":418,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":309,"start":290,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1121,"start":1045,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[563,577],"query_length":14,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"9e839a96bdfc724460a246216f4afd14d6cdc68baee70ec9678ce7a532c4839d","group_id":"9e839a96bdfc724460a246216f4afd14d6cdc68baee70ec9678ce7a532c4839d","id":"INTERVALS-0018540","index":18540,"input":{"contigs":{"synthetic_A":1004,"synthetic_B":1346},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":563,"start":549,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":617,"start":578,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":839,"start":838,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":537,"start":510,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":810,"start":765,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":751,"start":696,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":764,"start":758,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":791,"start":767,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":631,"start":540,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":914,"start":798,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":577,"start":563,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":77},{"feature_index":2,"overlap_bases":2}],"query_bed":[917,995],"query_length":78,"union_overlap_bases":78},"family":"overlapping_blocks","fingerprint":"678d2f84a2e92184f6218e5713c7170d3be50da022ce97143cfec793f0e2e42e","group_id":"678d2f84a2e92184f6218e5713c7170d3be50da022ce97143cfec793f0e2e42e","id":"INTERVALS-0018552","index":18552,"input":{"contigs":{"synthetic_A":1147,"synthetic_B":1501},"features":[{"basis":"one_closed","contig":"synthetic_A","end":920,"start":915,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":995,"start":918,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":998,"start":993,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":64,"start":30,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":128,"start":42,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":995,"start":917,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":42},{"feature_index":5,"overlap_bases":35}],"query_bed":[618,660],"query_length":42,"union_overlap_bases":42},"family":"coordinate_conversion","fingerprint":"43bdea9e3ffdf9e813a253e295669088cabc3f6a0b09cda1d2c8e0b07aa5b63f","group_id":"43bdea9e3ffdf9e813a253e295669088cabc3f6a0b09cda1d2c8e0b07aa5b63f","id":"INTERVALS-0018559","index":18559,"input":{"contigs":{"synthetic_A":1275,"synthetic_B":1475},"features":[{"basis":"one_closed","contig":"synthetic_A","end":660,"start":619,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":632,"start":622,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":321,"start":262,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1126,"start":1038,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":417,"start":305,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":653,"start":578,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":927,"start":855,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":551,"start":510,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":887,"start":846,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":660,"start":619,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":49},{"feature_index":1,"overlap_bases":47}],"query_bed":[1164,1213],"query_length":49,"union_overlap_bases":49},"family":"nested","fingerprint":"26cb59eee49c4c4cd96b925d910726a8d828d78990f806329aa0e7278f45b0eb","group_id":"26cb59eee49c4c4cd96b925d910726a8d828d78990f806329aa0e7278f45b0eb","id":"INTERVALS-0018561","index":18561,"input":{"contigs":{"synthetic_A":1733,"synthetic_B":739},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1218,"start":1159,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1212,"start":1165,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1501,"start":1460,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":272,"start":206,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":675,"start":579,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":327,"start":218,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":625,"start":573,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":530,"start":471,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":560,"start":510,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":858,"start":761,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1213,"start":1164,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":19},{"feature_index":2,"overlap_bases":2}],"query_bed":[221,241],"query_length":20,"union_overlap_bases":20},"family":"overlapping_blocks","fingerprint":"03a8af8e495e4965bc5f5896eeb1720a6852f0b01ca8ba614d55fa0d2f98183a","group_id":"03a8af8e495e4965bc5f5896eeb1720a6852f0b01ca8ba614d55fa0d2f98183a","id":"INTERVALS-0018577","index":18577,"input":{"contigs":{"synthetic_A":1093,"synthetic_B":697},"features":[{"basis":"one_closed","contig":"synthetic_B","end":224,"start":219,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":241,"start":222,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":244,"start":239,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":623,"start":584,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":634,"start":571,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":979,"start":939,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":89,"start":47,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":330,"start":290,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":241,"start":221,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":29},{"feature_index":2,"overlap_bases":2}],"query_bed":[782,812],"query_length":30,"union_overlap_bases":30},"family":"overlapping_blocks","fingerprint":"8404ee5451c4a073c85dafb2f8582d444cbe1a958803d1b802f4ef331003751f","group_id":"8404ee5451c4a073c85dafb2f8582d444cbe1a958803d1b802f4ef331003751f","id":"INTERVALS-0018587","index":18587,"input":{"contigs":{"synthetic_A":1303,"synthetic_B":1532},"features":[{"basis":"one_closed","contig":"synthetic_B","end":785,"start":780,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":812,"start":784,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":815,"start":810,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":729,"start":636,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":156,"start":69,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":464,"start":363,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":407,"start":372,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":812,"start":783,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":78},{"feature_index":3,"overlap_bases":29},{"feature_index":5,"overlap_bases":69},{"feature_index":8,"overlap_bases":8}],"query_bed":[308,386],"query_length":78,"union_overlap_bases":78},"family":"stranded","fingerprint":"8dcee3a451067c35632049b08150ae87b7cafbbe99fc764dda3e67359f90ed83","group_id":"8dcee3a451067c35632049b08150ae87b7cafbbe99fc764dda3e67359f90ed83","id":"INTERVALS-0018588","index":18588,"input":{"contigs":{"synthetic_A":835,"synthetic_B":1182},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":386,"start":308,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":386,"start":309,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":879,"start":792,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":464,"start":358,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":685,"start":565,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":409,"start":318,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1020,"start":985,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":183,"start":82,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":448,"start":378,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":724,"start":681,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":196,"start":120,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":386,"start":309,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":19}],"query_bed":[297,316],"query_length":19,"union_overlap_bases":19},"family":"stranded","fingerprint":"d5105b76d7c2ae82c3ce5308629c8fee9e1d71818cbfce3e7b0960b7aff91d87","group_id":"d5105b76d7c2ae82c3ce5308629c8fee9e1d71818cbfce3e7b0960b7aff91d87","id":"INTERVALS-0018593","index":18593,"input":{"contigs":{"synthetic_A":736,"synthetic_B":1119},"features":[{"basis":"one_closed","contig":"synthetic_B","end":316,"start":298,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":316,"start":298,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":632,"start":517,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":896,"start":896,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":696,"start":639,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":605,"start":541,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":275,"start":174,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":335,"start":232,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":122,"start":10,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":438,"start":339,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":316,"start":297,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":17},{"feature_index":2,"overlap_bases":2}],"query_bed":[302,320],"query_length":18,"union_overlap_bases":18},"family":"overlapping_blocks","fingerprint":"4703293a563c9d9846fca8671682b1bbbbcaefaa8f3718ff3496f600515fdef4","group_id":"4703293a563c9d9846fca8671682b1bbbbcaefaa8f3718ff3496f600515fdef4","id":"INTERVALS-0018617","index":18617,"input":{"contigs":{"synthetic_A":1432,"synthetic_B":864},"features":[{"basis":"one_closed","contig":"synthetic_A","end":305,"start":300,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":320,"start":303,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":323,"start":318,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":426,"start":395,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":635,"start":615,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":320,"start":303,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":17}],"query_bed":[563,580],"query_length":17,"union_overlap_bases":17},"family":"stranded","fingerprint":"416a9cce5af02e853ce983ce38655fc90c537d722f5e44373758c591d0176993","group_id":"416a9cce5af02e853ce983ce38655fc90c537d722f5e44373758c591d0176993","id":"INTERVALS-0018618","index":18618,"input":{"contigs":{"synthetic_A":1205,"synthetic_B":1748},"features":[{"basis":"one_closed","contig":"synthetic_A","end":580,"start":564,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":580,"start":563,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":276,"start":203,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":537,"start":422,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":179,"start":92,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":642,"start":594,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":965,"start":879,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":432,"start":360,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1569,"start":1524,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":658,"start":559,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":580,"start":564,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":7,"overlap_bases":47}],"query_bed":[111,166],"query_length":55,"union_overlap_bases":47},"family":"touching_boundary","fingerprint":"95038f26eb79b04b4d0dcaa80a3f68f93e27e2ea259174960493471a6c2327e6","group_id":"95038f26eb79b04b4d0dcaa80a3f68f93e27e2ea259174960493471a6c2327e6","id":"INTERVALS-0018620","index":18620,"input":{"contigs":{"synthetic_A":1293,"synthetic_B":1538},"features":[{"basis":"one_closed","contig":"synthetic_A","end":111,"start":106,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":178,"start":167,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":526,"start":480,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":309,"start":291,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":836,"start":773,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":332,"start":294,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":146,"start":55,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":158,"start":92,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":166,"start":112,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":38},{"feature_index":9,"overlap_bases":1}],"query_bed":[600,638],"query_length":38,"union_overlap_bases":38},"family":"coordinate_conversion","fingerprint":"e63419e28d94009e5e4fcdc6c1458caa620ca657ecaa5f66db174a5010e173bd","group_id":"e63419e28d94009e5e4fcdc6c1458caa620ca657ecaa5f66db174a5010e173bd","id":"INTERVALS-0018624","index":18624,"input":{"contigs":{"synthetic_A":900,"synthetic_B":958},"features":[{"basis":"one_closed","contig":"synthetic_A","end":638,"start":601,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":336,"start":232,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":297,"start":262,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":805,"start":738,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":522,"start":456,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":757,"start":648,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":242,"start":237,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":32,"start":26,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":272,"start":224,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":601,"start":519,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":720,"start":634,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":453,"start":364,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":638,"start":601,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[562,576],"query_length":14,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"9f2f592678e282c16bc13fc571f23e4be767881f7baffb8483fa04179c956ff6","group_id":"9f2f592678e282c16bc13fc571f23e4be767881f7baffb8483fa04179c956ff6","id":"INTERVALS-0018630","index":18630,"input":{"contigs":{"synthetic_A":923,"synthetic_B":873},"features":[{"basis":"one_closed","contig":"synthetic_A","end":562,"start":544,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":589,"start":577,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":559,"start":538,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":553,"start":487,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":245,"start":219,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":747,"start":651,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":576,"start":563,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[392,425],"query_length":33,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"d9a9c154c2e60d2efba95a19f2ec69829d391cf4aa46497b1c7991ca37fa1572","group_id":"d9a9c154c2e60d2efba95a19f2ec69829d391cf4aa46497b1c7991ca37fa1572","id":"INTERVALS-0018640","index":18640,"input":{"contigs":{"synthetic_A":1072,"synthetic_B":608},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":392,"start":388,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":432,"start":426,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":589,"start":527,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":999,"start":895,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":136,"start":79,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":425,"start":393,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":38},{"feature_index":1,"overlap_bases":36},{"feature_index":3,"overlap_bases":1},{"feature_index":5,"overlap_bases":8}],"query_bed":[974,1012],"query_length":38,"union_overlap_bases":38},"family":"nested","fingerprint":"a11764f43495f87b131bd1a8bbd9858ee014ef8fc12d65bf111fa417ba34e19f","group_id":"a11764f43495f87b131bd1a8bbd9858ee014ef8fc12d65bf111fa417ba34e19f","id":"INTERVALS-0018651","index":18651,"input":{"contigs":{"synthetic_A":1497,"synthetic_B":945},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1017,"start":970,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1011,"start":975,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":591,"start":508,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":975,"start":917,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1387,"start":1309,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":982,"start":912,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1012,"start":974,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[797,866],"query_length":69,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"6cc8ba0ef0609eb2d7ac3a6f82144a26580699320442b681a416b39e8fd2720d","group_id":"6cc8ba0ef0609eb2d7ac3a6f82144a26580699320442b681a416b39e8fd2720d","id":"INTERVALS-0018655","index":18655,"input":{"contigs":{"synthetic_A":827,"synthetic_B":1374},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":797,"start":786,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":903,"start":867,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":32,"start":30,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":619,"start":597,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":663,"start":567,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":958,"start":949,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":745,"start":677,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":977,"start":893,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":389,"start":311,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":222,"start":205,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":866,"start":798,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":26}],"query_bed":[140,166],"query_length":26,"union_overlap_bases":26},"family":"stranded","fingerprint":"ab55be521415b199105e5376dce48196782490cbaf01b611feb96d1809c86e35","group_id":"ab55be521415b199105e5376dce48196782490cbaf01b611feb96d1809c86e35","id":"INTERVALS-0018658","index":18658,"input":{"contigs":{"synthetic_A":1208,"synthetic_B":1060},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":166,"start":140,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":166,"start":140,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":349,"start":340,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":734,"start":720,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":204,"start":185,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1092,"start":1047,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":680,"start":629,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":849,"start":842,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":896,"start":894,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":446,"start":398,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":929,"start":878,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":276,"start":261,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":166,"start":140,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":18}],"query_bed":[586,604],"query_length":18,"union_overlap_bases":18},"family":"coordinate_conversion","fingerprint":"e9ddc7bee819c475779b501fb870c0c438b278fbb1220dcd6b838fe260351bf9","group_id":"e9ddc7bee819c475779b501fb870c0c438b278fbb1220dcd6b838fe260351bf9","id":"INTERVALS-0018669","index":18669,"input":{"contigs":{"synthetic_A":1505,"synthetic_B":1239},"features":[{"basis":"one_closed","contig":"synthetic_B","end":604,"start":587,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":205,"start":187,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":748,"start":658,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":471,"start":470,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":486,"start":453,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":225,"start":205,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":417,"start":373,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1098,"start":1033,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":416,"start":312,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":993,"start":993,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":604,"start":587,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":38},{"feature_index":8,"overlap_bases":38}],"query_bed":[248,286],"query_length":38,"union_overlap_bases":38},"family":"coordinate_conversion","fingerprint":"58037bf4b4af37081cdb5cc0d16007e2f438fd9312a9f1d337de1d496d57d668","group_id":"58037bf4b4af37081cdb5cc0d16007e2f438fd9312a9f1d337de1d496d57d668","id":"INTERVALS-0018674","index":18674,"input":{"contigs":{"synthetic_A":608,"synthetic_B":816},"features":[{"basis":"one_closed","contig":"synthetic_A","end":286,"start":249,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":183,"start":159,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":380,"start":360,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":424,"start":406,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":361,"start":254,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":329,"start":251,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":115,"start":90,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":41,"start":36,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":305,"start":231,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":566,"start":483,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":691,"start":588,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":286,"start":249,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[205,269],"query_length":64,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"c57cfe4eed4710628da973b49a4a002ee96418e9431ee4de5f59c572a15ca467","group_id":"c57cfe4eed4710628da973b49a4a002ee96418e9431ee4de5f59c572a15ca467","id":"INTERVALS-0018675","index":18675,"input":{"contigs":{"synthetic_A":1235,"synthetic_B":1260},"features":[{"basis":"one_closed","contig":"synthetic_B","end":205,"start":194,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":274,"start":269,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":935,"start":867,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":558,"start":491,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1176,"start":1058,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":987,"start":966,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":169,"start":75,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":101,"start":64,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":269,"start":206,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":7}],"query_bed":[428,435],"query_length":7,"union_overlap_bases":7},"family":"stranded","fingerprint":"6d66b9e864b9aac1b775a07eb67498ace531ef06135a3f4f7b25e5220a284e7d","group_id":"6d66b9e864b9aac1b775a07eb67498ace531ef06135a3f4f7b25e5220a284e7d","id":"INTERVALS-0018678","index":18678,"input":{"contigs":{"synthetic_A":1127,"synthetic_B":1468},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":435,"start":428,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":435,"start":429,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":670,"start":561,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":829,"start":734,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":288,"start":257,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":880,"start":840,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":849,"start":811,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":587,"start":554,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":435,"start":429,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[157,202],"query_length":45,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"86b025108e3ec4666480f0c2e1127fadccf64a8e49b1a42233d3cda6d7727a94","group_id":"86b025108e3ec4666480f0c2e1127fadccf64a8e49b1a42233d3cda6d7727a94","id":"INTERVALS-0018685","index":18685,"input":{"contigs":{"synthetic_A":1321,"synthetic_B":1773},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":157,"start":147,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":223,"start":202,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1230,"start":1116,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":190,"start":156,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":652,"start":560,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":332,"start":225,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":79,"start":50,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1133,"start":1061,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":370,"start":345,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":661,"start":558,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":638,"start":564,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1014,"start":929,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":202,"start":158,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":52}],"query_bed":[123,175],"query_length":52,"union_overlap_bases":52},"family":"stranded","fingerprint":"e282e1e80bd8fc9ef18fd5a3f2db6b697fe8a72642f77a300fb68217c8a695ad","group_id":"e282e1e80bd8fc9ef18fd5a3f2db6b697fe8a72642f77a300fb68217c8a695ad","id":"INTERVALS-0018688","index":18688,"input":{"contigs":{"synthetic_A":859,"synthetic_B":1153},"features":[{"basis":"one_closed","contig":"synthetic_A","end":175,"start":124,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":175,"start":124,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":734,"start":673,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":430,"start":386,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":830,"start":748,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":739,"start":704,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":709,"start":701,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":175,"start":124,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[234,250],"query_length":16,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"64e7a22850624525238ea044069b65dcc1ddc5ca4798f5b6ec497b2c903279cf","group_id":"64e7a22850624525238ea044069b65dcc1ddc5ca4798f5b6ec497b2c903279cf","id":"INTERVALS-0018705","index":18705,"input":{"contigs":{"synthetic_A":1264,"synthetic_B":664},"features":[{"basis":"one_closed","contig":"synthetic_B","end":234,"start":228,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":287,"start":250,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":351,"start":282,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1105,"start":1066,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":500,"start":440,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":150,"start":111,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1150,"start":1082,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":187,"start":173,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":365,"start":362,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":529,"start":420,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":214,"start":191,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":400,"start":311,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":250,"start":235,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":60}],"query_bed":[158,218],"query_length":60,"union_overlap_bases":60},"family":"stranded","fingerprint":"c19f0c7cfe4b09795b22936d0d29e8959df12cfde984180d6939d615ce46555c","group_id":"c19f0c7cfe4b09795b22936d0d29e8959df12cfde984180d6939d615ce46555c","id":"INTERVALS-0018708","index":18708,"input":{"contigs":{"synthetic_A":1542,"synthetic_B":805},"features":[{"basis":"one_closed","contig":"synthetic_A","end":218,"start":159,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":218,"start":159,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":555,"start":454,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":561,"start":468,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":916,"start":911,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":969,"start":876,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":602,"start":521,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":218,"start":158,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":15},{"feature_index":2,"overlap_bases":2}],"query_bed":[691,707],"query_length":16,"union_overlap_bases":16},"family":"overlapping_blocks","fingerprint":"4f2f648e9e8f7231e93602d1427025d3b5426a0a26db6efee88fbf64f9f615d2","group_id":"4f2f648e9e8f7231e93602d1427025d3b5426a0a26db6efee88fbf64f9f615d2","id":"INTERVALS-0018712","index":18712,"input":{"contigs":{"synthetic_A":1460,"synthetic_B":1605},"features":[{"basis":"one_closed","contig":"synthetic_B","end":694,"start":689,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":707,"start":692,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":710,"start":706,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1205,"start":1153,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1132,"start":1096,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":292,"start":251,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":707,"start":692,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":19},{"feature_index":1,"overlap_bases":17},{"feature_index":8,"overlap_bases":19}],"query_bed":[140,159],"query_length":19,"union_overlap_bases":19},"family":"nested","fingerprint":"533ad5ae06b2982fb4656d184f5dae1346f4b4c71f80d0bb31076f04b5aae26f","group_id":"533ad5ae06b2982fb4656d184f5dae1346f4b4c71f80d0bb31076f04b5aae26f","id":"INTERVALS-0018726","index":18726,"input":{"contigs":{"synthetic_A":1146,"synthetic_B":1725},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":164,"start":135,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":158,"start":141,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":949,"start":927,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":405,"start":320,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1582,"start":1506,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":640,"start":608,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":281,"start":229,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":265,"start":248,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":192,"start":133,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":159,"start":140,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":61},{"feature_index":1,"overlap_bases":59}],"query_bed":[376,437],"query_length":61,"union_overlap_bases":61},"family":"nested","fingerprint":"af207c349bf6380f319aaaf968fa179d0c9d373411404a27ff5b5652b86dc775","group_id":"af207c349bf6380f319aaaf968fa179d0c9d373411404a27ff5b5652b86dc775","id":"INTERVALS-0018756","index":18756,"input":{"contigs":{"synthetic_A":777,"synthetic_B":875},"features":[{"basis":"one_closed","contig":"synthetic_B","end":442,"start":372,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":436,"start":378,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":277,"start":272,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":266,"start":174,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":367,"start":336,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":690,"start":650,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":463,"start":416,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":229,"start":203,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":274,"start":209,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":437,"start":377,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":78},{"feature_index":1,"overlap_bases":76},{"feature_index":9,"overlap_bases":24}],"query_bed":[178,256],"query_length":78,"union_overlap_bases":78},"family":"nested","fingerprint":"b51e639e821d14cf9ff38a4b4a625a301df29f9a69175d8620d84c40ffb2897d","group_id":"b51e639e821d14cf9ff38a4b4a625a301df29f9a69175d8620d84c40ffb2897d","id":"INTERVALS-0018776","index":18776,"input":{"contigs":{"synthetic_A":841,"synthetic_B":1065},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":261,"start":173,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":255,"start":179,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":655,"start":614,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":374,"start":343,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":516,"start":436,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":131,"start":83,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":533,"start":416,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":665,"start":591,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":898,"start":795,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":202,"start":125,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":256,"start":178,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":33}],"query_bed":[696,729],"query_length":33,"union_overlap_bases":33},"family":"stranded","fingerprint":"feed9c74f78ea63e145d6c73ecd46d73caec6de9bef5f7ed07008f054c8e78d7","group_id":"feed9c74f78ea63e145d6c73ecd46d73caec6de9bef5f7ed07008f054c8e78d7","id":"INTERVALS-0018778","index":18778,"input":{"contigs":{"synthetic_A":742,"synthetic_B":1125},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":729,"start":696,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":729,"start":697,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":765,"start":736,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":827,"start":759,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":224,"start":139,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":195,"start":154,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":729,"start":697,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":33},{"feature_index":2,"overlap_bases":25}],"query_bed":[239,272],"query_length":33,"union_overlap_bases":33},"family":"stranded","fingerprint":"892e45421b6538473105a3a938ed27b2cf5a86eac2e0dc1b537d8628768c87fc","group_id":"892e45421b6538473105a3a938ed27b2cf5a86eac2e0dc1b537d8628768c87fc","id":"INTERVALS-0018798","index":18798,"input":{"contigs":{"synthetic_A":846,"synthetic_B":702},"features":[{"basis":"one_closed","contig":"synthetic_A","end":272,"start":240,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":272,"start":239,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":264,"start":177,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":810,"start":697,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":641,"start":537,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":523,"start":467,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":570,"start":487,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":538,"start":499,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":552,"start":434,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":175,"start":127,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":451,"start":403,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":272,"start":240,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[163,188],"query_length":25,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"da54fe70b19b45291d7168c82e153638ffd0c74d95b5c04a0504a73ed14cbf30","group_id":"da54fe70b19b45291d7168c82e153638ffd0c74d95b5c04a0504a73ed14cbf30","id":"INTERVALS-0018810","index":18810,"input":{"contigs":{"synthetic_A":1457,"synthetic_B":967},"features":[{"basis":"one_closed","contig":"synthetic_A","end":163,"start":149,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":221,"start":188,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":949,"start":835,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":835,"start":762,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1067,"start":1010,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":188,"start":163,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":19},{"feature_index":1,"overlap_bases":17}],"query_bed":[412,431],"query_length":19,"union_overlap_bases":19},"family":"nested","fingerprint":"4f2ec920487fa72f357d51876a18d6fbe6a383b3d64088969ea1d724c1eedd8e","group_id":"4f2ec920487fa72f357d51876a18d6fbe6a383b3d64088969ea1d724c1eedd8e","id":"INTERVALS-0018816","index":18816,"input":{"contigs":{"synthetic_A":995,"synthetic_B":1796},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":436,"start":407,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":430,"start":414,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":804,"start":730,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":856,"start":791,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":61,"start":55,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":396,"start":303,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":431,"start":413,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":62}],"query_bed":[489,551],"query_length":62,"union_overlap_bases":62},"family":"coordinate_conversion","fingerprint":"6a89360644f12ab82438b09661e9d75c88c0c993189575fe70093c4b483c0e86","group_id":"6a89360644f12ab82438b09661e9d75c88c0c993189575fe70093c4b483c0e86","id":"INTERVALS-0018819","index":18819,"input":{"contigs":{"synthetic_A":1602,"synthetic_B":1671},"features":[{"basis":"one_closed","contig":"synthetic_A","end":551,"start":490,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":788,"start":760,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1363,"start":1285,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":406,"start":324,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":970,"start":880,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":551,"start":490,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[266,319],"query_length":53,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"2a8780262706140f86d1bedcf6096b64d2945a12dd5b98309957042d67f13acc","group_id":"2a8780262706140f86d1bedcf6096b64d2945a12dd5b98309957042d67f13acc","id":"INTERVALS-0018825","index":18825,"input":{"contigs":{"synthetic_A":1091,"synthetic_B":647},"features":[{"basis":"one_closed","contig":"synthetic_B","end":266,"start":253,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":327,"start":319,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":950,"start":874,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":375,"start":307,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":119,"start":75,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":450,"start":382,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":54,"start":2,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":319,"start":266,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":47},{"feature_index":5,"overlap_bases":20},{"feature_index":6,"overlap_bases":25}],"query_bed":[123,170],"query_length":47,"union_overlap_bases":47},"family":"coordinate_conversion","fingerprint":"c46bd72891761a3e8892d6de34dc9ab431f1ded647102a8d4b1548f05d86cbca","group_id":"c46bd72891761a3e8892d6de34dc9ab431f1ded647102a8d4b1548f05d86cbca","id":"INTERVALS-0018839","index":18839,"input":{"contigs":{"synthetic_A":858,"synthetic_B":675},"features":[{"basis":"one_closed","contig":"synthetic_B","end":170,"start":124,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":329,"start":323,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":433,"start":338,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":195,"start":105,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":501,"start":392,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":223,"start":151,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":237,"start":146,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":451,"start":347,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":90,"start":41,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":141,"start":112,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":170,"start":124,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":6},{"feature_index":1,"overlap_bases":4}],"query_bed":[257,263],"query_length":6,"union_overlap_bases":6},"family":"nested","fingerprint":"94883704ecf96c76ddee439aa94fce813286fc5c6954cf007899a31ca7b4c3a7","group_id":"94883704ecf96c76ddee439aa94fce813286fc5c6954cf007899a31ca7b4c3a7","id":"INTERVALS-0018846","index":18846,"input":{"contigs":{"synthetic_A":1370,"synthetic_B":906},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":268,"start":252,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":262,"start":258,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":753,"start":709,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":106,"start":59,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":541,"start":432,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":363,"start":299,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":434,"start":375,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":446,"start":399,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1097,"start":1040,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":263,"start":257,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":51}],"query_bed":[645,696],"query_length":51,"union_overlap_bases":51},"family":"stranded","fingerprint":"2408ba620dd28a4b9cdf66c0a0b628dc3f48e1155ebe61f797a461231a03b456","group_id":"2408ba620dd28a4b9cdf66c0a0b628dc3f48e1155ebe61f797a461231a03b456","id":"INTERVALS-0018848","index":18848,"input":{"contigs":{"synthetic_A":1094,"synthetic_B":1002},"features":[{"basis":"one_closed","contig":"synthetic_A","end":696,"start":646,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":696,"start":646,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":746,"start":636,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":496,"start":494,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":287,"start":240,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":527,"start":498,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":891,"start":798,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":778,"start":672,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":239,"start":184,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":754,"start":731,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":327,"start":280,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":696,"start":646,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":40}],"query_bed":[360,400],"query_length":40,"union_overlap_bases":40},"family":"stranded","fingerprint":"b7ee3252d02fdbbafe5bd8f4b16248fa4309e417d4499fd5e4b4168aedd1356e","group_id":"b7ee3252d02fdbbafe5bd8f4b16248fa4309e417d4499fd5e4b4168aedd1356e","id":"INTERVALS-0018853","index":18853,"input":{"contigs":{"synthetic_A":1219,"synthetic_B":1733},"features":[{"basis":"one_closed","contig":"synthetic_A","end":400,"start":361,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":400,"start":361,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":308,"start":245,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":538,"start":421,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":284,"start":279,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":400,"start":360,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[49,122],"query_length":73,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e9b9e9989b9171a39c8a99883424dc05ba41266dff5a88766ed867a6327a5335","group_id":"e9b9e9989b9171a39c8a99883424dc05ba41266dff5a88766ed867a6327a5335","id":"INTERVALS-0018860","index":18860,"input":{"contigs":{"synthetic_A":702,"synthetic_B":1118},"features":[{"basis":"one_closed","contig":"synthetic_B","end":49,"start":44,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":147,"start":123,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":308,"start":243,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":240,"start":211,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":624,"start":525,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":352,"start":302,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":64,"start":38,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":72,"start":34,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":917,"start":852,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":684,"start":571,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":302,"start":291,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":122,"start":50,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":69}],"query_bed":[1288,1357],"query_length":69,"union_overlap_bases":69},"family":"coordinate_conversion","fingerprint":"1eec73de0107b4c930df051af0b03701b9764cdfad334c05ec0774b587508a3e","group_id":"1eec73de0107b4c930df051af0b03701b9764cdfad334c05ec0774b587508a3e","id":"INTERVALS-0018874","index":18874,"input":{"contigs":{"synthetic_A":1760,"synthetic_B":1369},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1357,"start":1289,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":716,"start":614,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1525,"start":1427,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":422,"start":333,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":256,"start":232,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":702,"start":642,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":863,"start":745,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":172,"start":74,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1298,"start":1211,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1357,"start":1289,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":34},{"feature_index":6,"overlap_bases":34}],"query_bed":[717,751],"query_length":34,"union_overlap_bases":34},"family":"coordinate_conversion","fingerprint":"e9986e6cf6cf72cda431224386d3e9eee8c2b5d619ee4474aa32efe1447faee4","group_id":"e9986e6cf6cf72cda431224386d3e9eee8c2b5d619ee4474aa32efe1447faee4","id":"INTERVALS-0018879","index":18879,"input":{"contigs":{"synthetic_A":1516,"synthetic_B":957},"features":[{"basis":"one_closed","contig":"synthetic_B","end":751,"start":718,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":612,"start":593,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":647,"start":608,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":402,"start":300,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":650,"start":609,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":334,"start":289,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":763,"start":678,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":648,"start":595,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":510,"start":448,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1082,"start":1043,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":172,"start":125,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":126,"start":97,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":751,"start":718,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":55},{"feature_index":2,"overlap_bases":2}],"query_bed":[775,831],"query_length":56,"union_overlap_bases":56},"family":"overlapping_blocks","fingerprint":"e6ce790607e0c594c0f83eed67d82b2e5c0d75abb17da195ba03fce6498db61c","group_id":"e6ce790607e0c594c0f83eed67d82b2e5c0d75abb17da195ba03fce6498db61c","id":"INTERVALS-0018892","index":18892,"input":{"contigs":{"synthetic_A":954,"synthetic_B":1464},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":778,"start":772,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":831,"start":777,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":834,"start":830,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":412,"start":294,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":475,"start":430,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":414,"start":379,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":648,"start":550,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":706,"start":674,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":753,"start":726,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":707,"start":706,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":831,"start":775,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":35},{"feature_index":2,"overlap_bases":2}],"query_bed":[250,286],"query_length":36,"union_overlap_bases":36},"family":"overlapping_blocks","fingerprint":"be22046e4a40fd2d572b2fa98737e036cef1f0037640f6386944cba6f770dcf9","group_id":"be22046e4a40fd2d572b2fa98737e036cef1f0037640f6386944cba6f770dcf9","id":"INTERVALS-0018897","index":18897,"input":{"contigs":{"synthetic_A":1588,"synthetic_B":640},"features":[{"basis":"one_closed","contig":"synthetic_A","end":253,"start":248,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":286,"start":252,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":289,"start":285,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":764,"start":712,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1485,"start":1460,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":159,"start":113,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":87,"start":31,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":335,"start":232,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":140,"start":70,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":331,"start":305,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":386,"start":336,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":286,"start":251,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":80}],"query_bed":[683,763],"query_length":80,"union_overlap_bases":80},"family":"stranded","fingerprint":"d71a2758756a4fa3d2da28ee4a8e8f907a0ada5e18f082f1023f52be6d550447","group_id":"d71a2758756a4fa3d2da28ee4a8e8f907a0ada5e18f082f1023f52be6d550447","id":"INTERVALS-0018913","index":18913,"input":{"contigs":{"synthetic_A":1094,"synthetic_B":1371},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":763,"start":683,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":763,"start":684,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":767,"start":744,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":502,"start":385,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":839,"start":733,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":674,"start":590,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":763,"start":684,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":40}],"query_bed":[638,678],"query_length":40,"union_overlap_bases":40},"family":"stranded","fingerprint":"f8b662fa69c508dac7f8d24b169985e88f35851db3ffa7ee1fb7697e1e8beb27","group_id":"f8b662fa69c508dac7f8d24b169985e88f35851db3ffa7ee1fb7697e1e8beb27","id":"INTERVALS-0018918","index":18918,"input":{"contigs":{"synthetic_A":849,"synthetic_B":1173},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":678,"start":638,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":678,"start":638,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1123,"start":1011,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":118,"start":99,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":287,"start":223,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":396,"start":319,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":500,"start":423,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":303,"start":294,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":678,"start":639,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":45},{"feature_index":1,"overlap_bases":43}],"query_bed":[888,933],"query_length":45,"union_overlap_bases":45},"family":"nested","fingerprint":"c0f8158e2b810bc74bccb4b91748802c1c5bc725b9b21b0ee75fe55eca41545c","group_id":"c0f8158e2b810bc74bccb4b91748802c1c5bc725b9b21b0ee75fe55eca41545c","id":"INTERVALS-0018921","index":18921,"input":{"contigs":{"synthetic_A":1708,"synthetic_B":1435},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":938,"start":883,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":932,"start":890,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1308,"start":1283,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1325,"start":1293,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":135,"start":16,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":329,"start":291,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":383,"start":284,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":539,"start":537,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":933,"start":888,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":10}],"query_bed":[624,634],"query_length":10,"union_overlap_bases":10},"family":"coordinate_conversion","fingerprint":"69f3ee3eef45d63125bd37343fd75838e6fae2ca5d129b1f8f97fbc7a0f0daed","group_id":"69f3ee3eef45d63125bd37343fd75838e6fae2ca5d129b1f8f97fbc7a0f0daed","id":"INTERVALS-0018924","index":18924,"input":{"contigs":{"synthetic_A":1722,"synthetic_B":1312},"features":[{"basis":"one_closed","contig":"synthetic_B","end":634,"start":625,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":523,"start":519,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":242,"start":225,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":536,"start":474,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":457,"start":386,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1549,"start":1542,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":587,"start":562,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":372,"start":301,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":305,"start":296,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":634,"start":625,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":54},{"feature_index":2,"overlap_bases":2}],"query_bed":[35,90],"query_length":55,"union_overlap_bases":55},"family":"overlapping_blocks","fingerprint":"caa28a38c6b03c56e3c90fd0b8e4a1e8c0e7df70fb5152203ffd0f9806f87639","group_id":"caa28a38c6b03c56e3c90fd0b8e4a1e8c0e7df70fb5152203ffd0f9806f87639","id":"INTERVALS-0018927","index":18927,"input":{"contigs":{"synthetic_A":1147,"synthetic_B":620},"features":[{"basis":"one_closed","contig":"synthetic_A","end":38,"start":33,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":90,"start":36,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":93,"start":88,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":299,"start":259,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":697,"start":646,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":745,"start":670,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":242,"start":135,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":556,"start":526,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":90,"start":36,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":24},{"feature_index":1,"overlap_bases":22}],"query_bed":[210,234],"query_length":24,"union_overlap_bases":24},"family":"nested","fingerprint":"6a6b639c5944748c194c6effe227ec20085ae1b813e51a304098c30e0a269e86","group_id":"6a6b639c5944748c194c6effe227ec20085ae1b813e51a304098c30e0a269e86","id":"INTERVALS-0018936","index":18936,"input":{"contigs":{"synthetic_A":1684,"synthetic_B":802},"features":[{"basis":"one_closed","contig":"synthetic_B","end":239,"start":206,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":233,"start":211,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":177,"start":146,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":182,"start":109,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":743,"start":635,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":713,"start":653,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":204,"start":168,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":786,"start":752,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1185,"start":1136,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":45,"start":25,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1234,"start":1114,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":263,"start":259,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":234,"start":210,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":66}],"query_bed":[1142,1208],"query_length":66,"union_overlap_bases":66},"family":"coordinate_conversion","fingerprint":"d0668b406625e7c3e23c54c5ca6ad1377ba6ad6290e0d0aa4aea3a113e87c8e8","group_id":"d0668b406625e7c3e23c54c5ca6ad1377ba6ad6290e0d0aa4aea3a113e87c8e8","id":"INTERVALS-0018939","index":18939,"input":{"contigs":{"synthetic_A":774,"synthetic_B":1632},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1208,"start":1143,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":464,"start":420,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1273,"start":1233,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":357,"start":281,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1500,"start":1386,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":498,"start":385,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":332,"start":278,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1292,"start":1218,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":404,"start":306,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":230,"start":210,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1208,"start":1143,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":62},{"feature_index":2,"overlap_bases":2}],"query_bed":[582,645],"query_length":63,"union_overlap_bases":63},"family":"overlapping_blocks","fingerprint":"5d910b542f311145f9bfd73af9830cd439733914f4638dc0fb0f2b6eb919dbd1","group_id":"5d910b542f311145f9bfd73af9830cd439733914f4638dc0fb0f2b6eb919dbd1","id":"INTERVALS-0018952","index":18952,"input":{"contigs":{"synthetic_A":1428,"synthetic_B":1143},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":585,"start":579,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":645,"start":583,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":648,"start":644,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1100,"start":995,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":867,"start":776,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":973,"start":874,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":569,"start":464,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":377,"start":377,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":376,"start":306,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":501,"start":498,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":281,"start":231,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":645,"start":583,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":8,"overlap_bases":11}],"query_bed":[1092,1103],"query_length":11,"union_overlap_bases":11},"family":"touching_boundary","fingerprint":"80cf2eac5eff5ed11ef3fa1b632cca6f1def7f5149d182b9db8b9fddc41172c2","group_id":"80cf2eac5eff5ed11ef3fa1b632cca6f1def7f5149d182b9db8b9fddc41172c2","id":"INTERVALS-0018955","index":18955,"input":{"contigs":{"synthetic_A":1345,"synthetic_B":1581},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1092,"start":1075,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1139,"start":1104,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":408,"start":289,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":277,"start":219,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":66,"start":12,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1164,"start":1151,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1544,"start":1444,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":165,"start":149,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1123,"start":1019,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":918,"start":809,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1103,"start":1092,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":36},{"feature_index":2,"overlap_bases":2},{"feature_index":7,"overlap_bases":12}],"query_bed":[135,172],"query_length":37,"union_overlap_bases":37},"family":"overlapping_blocks","fingerprint":"856b28c6cf87fcbf161fe20788965a68db6d93f2406945f44d454a5b1b2cd623","group_id":"856b28c6cf87fcbf161fe20788965a68db6d93f2406945f44d454a5b1b2cd623","id":"INTERVALS-0018967","index":18967,"input":{"contigs":{"synthetic_A":1790,"synthetic_B":1553},"features":[{"basis":"one_closed","contig":"synthetic_B","end":138,"start":133,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":172,"start":136,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":175,"start":170,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":359,"start":283,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":732,"start":658,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":581,"start":534,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1387,"start":1360,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":147,"start":88,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":805,"start":693,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1670,"start":1565,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":172,"start":136,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":38}],"query_bed":[175,213],"query_length":38,"union_overlap_bases":38},"family":"stranded","fingerprint":"3600cbd8e689d9f2c4474fb63b57ddd02bbfe522f97443fc41f7acb244d1f8d0","group_id":"3600cbd8e689d9f2c4474fb63b57ddd02bbfe522f97443fc41f7acb244d1f8d0","id":"INTERVALS-0018983","index":18983,"input":{"contigs":{"synthetic_A":900,"synthetic_B":784},"features":[{"basis":"one_closed","contig":"synthetic_A","end":213,"start":176,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":213,"start":175,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":165,"start":154,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":499,"start":462,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":129,"start":46,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":640,"start":533,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":36,"start":15,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":666,"start":583,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":213,"start":175,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":7},{"feature_index":1,"overlap_bases":5}],"query_bed":[936,943],"query_length":7,"union_overlap_bases":7},"family":"nested","fingerprint":"49f3a6922852651a1036440b4bec213c13a10058470871e625d0506517dbaf76","group_id":"49f3a6922852651a1036440b4bec213c13a10058470871e625d0506517dbaf76","id":"INTERVALS-0018991","index":18991,"input":{"contigs":{"synthetic_A":1253,"synthetic_B":1464},"features":[{"basis":"one_closed","contig":"synthetic_A","end":948,"start":932,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":942,"start":937,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":508,"start":420,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":269,"start":203,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1269,"start":1256,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":141,"start":119,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":203,"start":100,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":430,"start":336,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":246,"start":180,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":305,"start":230,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":843,"start":842,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":943,"start":936,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":56}],"query_bed":[632,688],"query_length":56,"union_overlap_bases":56},"family":"coordinate_conversion","fingerprint":"faa2a79a8713f446110af7ceec3d4dbc6e9254b1781d1158773221c9d5fb8ce2","group_id":"faa2a79a8713f446110af7ceec3d4dbc6e9254b1781d1158773221c9d5fb8ce2","id":"INTERVALS-0018994","index":18994,"input":{"contigs":{"synthetic_A":686,"synthetic_B":1341},"features":[{"basis":"one_closed","contig":"synthetic_B","end":688,"start":633,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":189,"start":178,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":571,"start":490,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":852,"start":741,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":980,"start":866,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1053,"start":959,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":253,"start":241,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":167,"start":95,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":688,"start":633,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":21},{"feature_index":1,"overlap_bases":19}],"query_bed":[631,652],"query_length":21,"union_overlap_bases":21},"family":"nested","fingerprint":"a7f5fbf092353fa24587b819bbfa6514c2fdea07e0984f25ea1c2db5d6db19ff","group_id":"a7f5fbf092353fa24587b819bbfa6514c2fdea07e0984f25ea1c2db5d6db19ff","id":"INTERVALS-0019006","index":19006,"input":{"contigs":{"synthetic_A":1426,"synthetic_B":883},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":657,"start":626,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":651,"start":632,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":731,"start":611,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":195,"start":127,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":809,"start":728,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1272,"start":1232,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":953,"start":929,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":993,"start":901,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":963,"start":864,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":277,"start":190,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":653,"start":601,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":502,"start":391,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":652,"start":632,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":73},{"feature_index":1,"overlap_bases":7}],"query_bed":[192,265],"query_length":73,"union_overlap_bases":73},"family":"coordinate_conversion","fingerprint":"f15ada2c5945cbb88c8732209c043751577c29170c05d38e6d48371eef84636b","group_id":"f15ada2c5945cbb88c8732209c043751577c29170c05d38e6d48371eef84636b","id":"INTERVALS-0019014","index":19014,"input":{"contigs":{"synthetic_A":613,"synthetic_B":1752},"features":[{"basis":"one_closed","contig":"synthetic_A","end":265,"start":193,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":354,"start":259,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":457,"start":426,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":960,"start":954,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":856,"start":811,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":542,"start":456,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":381,"start":265,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1336,"start":1294,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":186,"start":122,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1176,"start":1106,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":117,"start":60,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":550,"start":481,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":265,"start":193,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":53},{"feature_index":2,"overlap_bases":2}],"query_bed":[849,903],"query_length":54,"union_overlap_bases":54},"family":"overlapping_blocks","fingerprint":"b9422e5663b9bd19a3443d88647a75afabf1340974036410d6273b16f5603a55","group_id":"b9422e5663b9bd19a3443d88647a75afabf1340974036410d6273b16f5603a55","id":"INTERVALS-0019017","index":19017,"input":{"contigs":{"synthetic_A":1352,"synthetic_B":1250},"features":[{"basis":"one_closed","contig":"synthetic_B","end":852,"start":847,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":903,"start":850,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":906,"start":901,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":870,"start":771,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":719,"start":715,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":903,"start":850,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":33}],"query_bed":[298,331],"query_length":33,"union_overlap_bases":33},"family":"stranded","fingerprint":"915bca6eead2242457b81941551a9a53388bf64926b8395da6e44d2c693893b0","group_id":"915bca6eead2242457b81941551a9a53388bf64926b8395da6e44d2c693893b0","id":"INTERVALS-0019038","index":19038,"input":{"contigs":{"synthetic_A":1488,"synthetic_B":959},"features":[{"basis":"one_closed","contig":"synthetic_A","end":331,"start":299,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":331,"start":299,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":492,"start":402,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":467,"start":454,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":427,"start":391,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1261,"start":1237,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":423,"start":374,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":611,"start":528,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1182,"start":1104,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1090,"start":1045,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":331,"start":298,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":62}],"query_bed":[24,86],"query_length":62,"union_overlap_bases":62},"family":"stranded","fingerprint":"ef70552aa9a3d74b8eec803d50044a001c86ad635c85f5b6d97cfc9669ded98b","group_id":"ef70552aa9a3d74b8eec803d50044a001c86ad635c85f5b6d97cfc9669ded98b","id":"INTERVALS-0019043","index":19043,"input":{"contigs":{"synthetic_A":1532,"synthetic_B":687},"features":[{"basis":"one_closed","contig":"synthetic_B","end":86,"start":25,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":86,"start":24,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":505,"start":468,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":692,"start":689,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1387,"start":1270,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":657,"start":617,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1057,"start":1054,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":117,"start":3,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":654,"start":537,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":508,"start":391,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":112,"start":18,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":232,"start":177,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":86,"start":25,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":77}],"query_bed":[122,199],"query_length":77,"union_overlap_bases":77},"family":"stranded","fingerprint":"b83109f647979b3362db124aaab9676f1f917d69851a4571399382c29c91b908","group_id":"b83109f647979b3362db124aaab9676f1f917d69851a4571399382c29c91b908","id":"INTERVALS-0019048","index":19048,"input":{"contigs":{"synthetic_A":1592,"synthetic_B":1374},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":199,"start":122,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":199,"start":122,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":884,"start":838,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":442,"start":350,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":998,"start":889,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":163,"start":127,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":233,"start":210,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":247,"start":241,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1153,"start":1037,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":902,"start":802,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":199,"start":123,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":28},{"feature_index":1,"overlap_bases":26}],"query_bed":[469,497],"query_length":28,"union_overlap_bases":28},"family":"nested","fingerprint":"4b4f7c3cd6a270ffc77ce59f98ebf6b82cd80fecaa8bf7fd171b670efd059d8a","group_id":"4b4f7c3cd6a270ffc77ce59f98ebf6b82cd80fecaa8bf7fd171b670efd059d8a","id":"INTERVALS-0019086","index":19086,"input":{"contigs":{"synthetic_A":1038,"synthetic_B":1262},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":502,"start":464,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":496,"start":470,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":306,"start":297,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":765,"start":676,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":837,"start":785,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":497,"start":469,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":4,"overlap_bases":32}],"query_bed":[589,657],"query_length":68,"union_overlap_bases":32},"family":"touching_boundary","fingerprint":"f9a642de0ca15ae1d7480960a304587b1044381cab1df88ef5e85f78ae138d91","group_id":"f9a642de0ca15ae1d7480960a304587b1044381cab1df88ef5e85f78ae138d91","id":"INTERVALS-0019110","index":19110,"input":{"contigs":{"synthetic_A":1464,"synthetic_B":604},"features":[{"basis":"one_closed","contig":"synthetic_A","end":589,"start":578,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":680,"start":658,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":795,"start":697,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":528,"start":457,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":657,"start":625,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":517,"start":468,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1032,"start":980,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":850,"start":764,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1245,"start":1239,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":484,"start":418,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":253,"start":226,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":376,"start":310,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":657,"start":590,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":70},{"feature_index":1,"overlap_bases":68},{"feature_index":6,"overlap_bases":23}],"query_bed":[208,278],"query_length":70,"union_overlap_bases":70},"family":"nested","fingerprint":"c4e2745a2746590192dbdf55f5ae43a519ef95c2a0f20761f7f0e281df43035d","group_id":"c4e2745a2746590192dbdf55f5ae43a519ef95c2a0f20761f7f0e281df43035d","id":"INTERVALS-0019116","index":19116,"input":{"contigs":{"synthetic_A":729,"synthetic_B":765},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":283,"start":203,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":277,"start":210,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":74,"start":50,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":457,"start":408,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":392,"start":381,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":368,"start":359,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":231,"start":130,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":278,"start":208,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":48},{"feature_index":2,"overlap_bases":2}],"query_bed":[559,608],"query_length":49,"union_overlap_bases":49},"family":"overlapping_blocks","fingerprint":"52ca2e76ddc06b348cb49bdf2d9ff359888ae7e2d31046e8dbf92360642c9765","group_id":"52ca2e76ddc06b348cb49bdf2d9ff359888ae7e2d31046e8dbf92360642c9765","id":"INTERVALS-0019117","index":19117,"input":{"contigs":{"synthetic_A":933,"synthetic_B":1198},"features":[{"basis":"one_closed","contig":"synthetic_B","end":562,"start":557,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":608,"start":561,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":611,"start":606,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":477,"start":380,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":349,"start":292,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":300,"start":213,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":529,"start":469,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":608,"start":560,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46},{"feature_index":1,"overlap_bases":44}],"query_bed":[439,485],"query_length":46,"union_overlap_bases":46},"family":"nested","fingerprint":"835350f41f797e929c93be1e68ecf5503bef49a5388d6b19353acdc788e8b37b","group_id":"835350f41f797e929c93be1e68ecf5503bef49a5388d6b19353acdc788e8b37b","id":"INTERVALS-0019121","index":19121,"input":{"contigs":{"synthetic_A":612,"synthetic_B":1675},"features":[{"basis":"one_closed","contig":"synthetic_B","end":490,"start":435,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":484,"start":440,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":49,"start":16,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":461,"start":459,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":426,"start":309,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":262,"start":153,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":189,"start":167,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":485,"start":440,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":58},{"feature_index":1,"overlap_bases":56}],"query_bed":[146,204],"query_length":58,"union_overlap_bases":58},"family":"nested","fingerprint":"11089554202ec7b57cc57f090336a890dbd4cda1de31ac0a2f387ef437e97940","group_id":"11089554202ec7b57cc57f090336a890dbd4cda1de31ac0a2f387ef437e97940","id":"INTERVALS-0019141","index":19141,"input":{"contigs":{"synthetic_A":679,"synthetic_B":775},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":209,"start":141,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":203,"start":148,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":233,"start":213,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":609,"start":608,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":167,"start":88,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":268,"start":251,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":446,"start":391,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":93,"start":11,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":204,"start":146,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[822,892],"query_length":70,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"e02712de208355805c4bf2190eb86698ca5a99d3ea676c44c237825692d4bc06","group_id":"e02712de208355805c4bf2190eb86698ca5a99d3ea676c44c237825692d4bc06","id":"INTERVALS-0019145","index":19145,"input":{"contigs":{"synthetic_A":1198,"synthetic_B":1752},"features":[{"basis":"one_closed","contig":"synthetic_A","end":822,"start":804,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":912,"start":893,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":619,"start":569,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":689,"start":612,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":94,"start":12,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":649,"start":571,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":341,"start":277,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":892,"start":822,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":5}],"query_bed":[564,569],"query_length":5,"union_overlap_bases":5},"family":"stranded","fingerprint":"accbd528435a1827aa49ef6c979f39c7b7557ad12a96b90cae527b33ede014d1","group_id":"accbd528435a1827aa49ef6c979f39c7b7557ad12a96b90cae527b33ede014d1","id":"INTERVALS-0019168","index":19168,"input":{"contigs":{"synthetic_A":1324,"synthetic_B":1027},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":569,"start":564,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":569,"start":565,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":819,"start":719,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":772,"start":755,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1027,"start":969,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":737,"start":704,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":592,"start":579,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":235,"start":124,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":156,"start":122,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":569,"start":565,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[619,673],"query_length":54,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"9edd02def5668af50af4fb8b67724ca1662be4d42d0034226e30b4332a69c9b6","group_id":"9edd02def5668af50af4fb8b67724ca1662be4d42d0034226e30b4332a69c9b6","id":"INTERVALS-0019170","index":19170,"input":{"contigs":{"synthetic_A":1453,"synthetic_B":1342},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":619,"start":606,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":705,"start":673,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":85,"start":21,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1189,"start":1107,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":891,"start":863,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":673,"start":619,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":43},{"feature_index":2,"overlap_bases":2}],"query_bed":[42,86],"query_length":44,"union_overlap_bases":44},"family":"overlapping_blocks","fingerprint":"c19a9c14f47738daf9ab25c54d5e0d96192c7b6d083e75077634d67ad5ad58e2","group_id":"c19a9c14f47738daf9ab25c54d5e0d96192c7b6d083e75077634d67ad5ad58e2","id":"INTERVALS-0019177","index":19177,"input":{"contigs":{"synthetic_A":993,"synthetic_B":1311},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":45,"start":39,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":86,"start":43,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":89,"start":85,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":674,"start":582,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":910,"start":842,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":885,"start":820,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":530,"start":484,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":86,"start":42,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":37}],"query_bed":[545,582],"query_length":37,"union_overlap_bases":37},"family":"stranded","fingerprint":"530bf3ecf4c2b185796adc0b79e62d26edc851e674c1d9d6225dfb538b1f73df","group_id":"530bf3ecf4c2b185796adc0b79e62d26edc851e674c1d9d6225dfb538b1f73df","id":"INTERVALS-0019178","index":19178,"input":{"contigs":{"synthetic_A":1235,"synthetic_B":1325},"features":[{"basis":"one_closed","contig":"synthetic_A","end":582,"start":546,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":582,"start":545,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":161,"start":61,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":544,"start":516,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":247,"start":199,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":525,"start":413,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":504,"start":497,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":582,"start":545,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":66}],"query_bed":[201,267],"query_length":66,"union_overlap_bases":66},"family":"stranded","fingerprint":"ec7e47f07e5f26ea324141c498b76b38613fad700c1254e1a2f6914698219bfc","group_id":"ec7e47f07e5f26ea324141c498b76b38613fad700c1254e1a2f6914698219bfc","id":"INTERVALS-0019198","index":19198,"input":{"contigs":{"synthetic_A":705,"synthetic_B":803},"features":[{"basis":"one_closed","contig":"synthetic_B","end":267,"start":202,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":267,"start":202,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":439,"start":403,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":291,"start":232,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":286,"start":276,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":507,"start":486,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":531,"start":469,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":77,"start":30,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":267,"start":202,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":12},{"feature_index":1,"overlap_bases":10}],"query_bed":[361,373],"query_length":12,"union_overlap_bases":12},"family":"nested","fingerprint":"05c82cea482bb196e33baf00af603c81aa3fb5b6627a2f363181f16c4bd7e6a2","group_id":"05c82cea482bb196e33baf00af603c81aa3fb5b6627a2f363181f16c4bd7e6a2","id":"INTERVALS-0019206","index":19206,"input":{"contigs":{"synthetic_A":1416,"synthetic_B":743},"features":[{"basis":"one_closed","contig":"synthetic_A","end":378,"start":357,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":372,"start":363,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":168,"start":168,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":462,"start":399,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":426,"start":407,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":532,"start":525,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":559,"start":523,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":517,"start":495,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":770,"start":762,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":373,"start":361,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":66},{"feature_index":7,"overlap_bases":9}],"query_bed":[460,526],"query_length":66,"union_overlap_bases":66},"family":"stranded","fingerprint":"45204256eb6c8f59b36717665252dbee01f07da44f1ce55858770f0e35c82a30","group_id":"45204256eb6c8f59b36717665252dbee01f07da44f1ce55858770f0e35c82a30","id":"INTERVALS-0019213","index":19213,"input":{"contigs":{"synthetic_A":717,"synthetic_B":817},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":526,"start":460,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":526,"start":461,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":200,"start":142,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":508,"start":388,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":247,"start":246,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":608,"start":540,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":441,"start":415,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":560,"start":518,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":601,"start":513,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":389,"start":326,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":596,"start":536,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":526,"start":460,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":79},{"feature_index":2,"overlap_bases":2}],"query_bed":[1353,1433],"query_length":80,"union_overlap_bases":80},"family":"overlapping_blocks","fingerprint":"68f6c8bc0b60749cf803859d71008ca03fb6fe5389153ffb1c99e4d5afefbe73","group_id":"68f6c8bc0b60749cf803859d71008ca03fb6fe5389153ffb1c99e4d5afefbe73","id":"INTERVALS-0019232","index":19232,"input":{"contigs":{"synthetic_A":985,"synthetic_B":1738},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1356,"start":1351,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1433,"start":1354,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1436,"start":1431,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":701,"start":681,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":866,"start":843,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":662,"start":661,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1145,"start":1037,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1433,"start":1353,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[428,468],"query_length":40,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"7cbee19ae89211481887c882e0b25d985257ecd36607125aa06379962f95dd3d","group_id":"7cbee19ae89211481887c882e0b25d985257ecd36607125aa06379962f95dd3d","id":"INTERVALS-0019240","index":19240,"input":{"contigs":{"synthetic_A":1228,"synthetic_B":1108},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":428,"start":423,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":472,"start":469,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":594,"start":520,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":980,"start":976,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":913,"start":858,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":867,"start":816,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1082,"start":1078,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":416,"start":313,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":468,"start":428,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":45},{"feature_index":1,"overlap_bases":43}],"query_bed":[320,365],"query_length":45,"union_overlap_bases":45},"family":"nested","fingerprint":"024e30e6b9ec92903da5e0f7cb7d7c2e35eac438c849f7e245c41f99b41e0d27","group_id":"024e30e6b9ec92903da5e0f7cb7d7c2e35eac438c849f7e245c41f99b41e0d27","id":"INTERVALS-0019241","index":19241,"input":{"contigs":{"synthetic_A":653,"synthetic_B":1174},"features":[{"basis":"one_closed","contig":"synthetic_A","end":370,"start":316,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":364,"start":321,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":450,"start":359,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":617,"start":606,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":361,"start":284,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":172,"start":162,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":792,"start":699,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":348,"start":267,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":844,"start":736,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":365,"start":320,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":52}],"query_bed":[450,502],"query_length":52,"union_overlap_bases":52},"family":"stranded","fingerprint":"720d4eee3b7aa71057c9ba36aa8a432e5d3f0259ad4dc343b75f92d6917fa146","group_id":"720d4eee3b7aa71057c9ba36aa8a432e5d3f0259ad4dc343b75f92d6917fa146","id":"INTERVALS-0019243","index":19243,"input":{"contigs":{"synthetic_A":1048,"synthetic_B":1063},"features":[{"basis":"one_closed","contig":"synthetic_B","end":502,"start":451,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":502,"start":451,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":309,"start":239,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":841,"start":744,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":941,"start":823,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":636,"start":529,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":485,"start":478,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":58,"start":17,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":241,"start":228,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":502,"start":450,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":53},{"feature_index":2,"overlap_bases":2},{"feature_index":5,"overlap_bases":50}],"query_bed":[380,434],"query_length":54,"union_overlap_bases":54},"family":"overlapping_blocks","fingerprint":"df8973eed87c0e487e400df5f94b7eec209977d6f78124b06f066a9707b09055","group_id":"df8973eed87c0e487e400df5f94b7eec209977d6f78124b06f066a9707b09055","id":"INTERVALS-0019272","index":19272,"input":{"contigs":{"synthetic_A":626,"synthetic_B":1451},"features":[{"basis":"one_closed","contig":"synthetic_A","end":383,"start":378,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":434,"start":382,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":437,"start":432,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":567,"start":547,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1034,"start":935,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":430,"start":362,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":317,"start":317,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":708,"start":685,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":434,"start":380,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":15},{"feature_index":2,"overlap_bases":2}],"query_bed":[996,1012],"query_length":16,"union_overlap_bases":16},"family":"overlapping_blocks","fingerprint":"44e12d288adcf9227c32e91fcd48f9f40587fa335da698875aaf58d732cdd009","group_id":"44e12d288adcf9227c32e91fcd48f9f40587fa335da698875aaf58d732cdd009","id":"INTERVALS-0019277","index":19277,"input":{"contigs":{"synthetic_A":1709,"synthetic_B":1526},"features":[{"basis":"one_closed","contig":"synthetic_A","end":999,"start":994,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1012,"start":998,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1015,"start":1010,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1271,"start":1250,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1087,"start":1067,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":697,"start":674,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":347,"start":329,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1126,"start":1120,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":473,"start":447,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1012,"start":996,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":71},{"feature_index":1,"overlap_bases":69},{"feature_index":6,"overlap_bases":28}],"query_bed":[345,416],"query_length":71,"union_overlap_bases":71},"family":"nested","fingerprint":"4e4fe39ab21c99343e8c6a84cb9adb0bfc38babbf6b70cf4f7033cd9e533ff6d","group_id":"4e4fe39ab21c99343e8c6a84cb9adb0bfc38babbf6b70cf4f7033cd9e533ff6d","id":"INTERVALS-0019296","index":19296,"input":{"contigs":{"synthetic_A":709,"synthetic_B":622},"features":[{"basis":"one_closed","contig":"synthetic_B","end":421,"start":341,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":415,"start":346,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":493,"start":383,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":500,"start":427,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":346,"start":252,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":531,"start":452,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":405,"start":377,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":335,"start":324,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":260,"start":257,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":416,"start":345,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[254,266],"query_length":12,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"f36b9f6887cf4b7324e75c288c07c295f4a0452ce2b06d79ad7f4087fe938cbc","group_id":"f36b9f6887cf4b7324e75c288c07c295f4a0452ce2b06d79ad7f4087fe938cbc","id":"INTERVALS-0019300","index":19300,"input":{"contigs":{"synthetic_A":1632,"synthetic_B":612},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":254,"start":235,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":267,"start":267,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":460,"start":391,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1185,"start":1102,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":727,"start":639,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":864,"start":813,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":266,"start":255,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":57},{"feature_index":1,"overlap_bases":55}],"query_bed":[463,520],"query_length":57,"union_overlap_bases":57},"family":"nested","fingerprint":"92e9bd6ecfbcd8620965bfb43a4f4acf4319c88cccf0d45264bb96abd85ea4aa","group_id":"92e9bd6ecfbcd8620965bfb43a4f4acf4319c88cccf0d45264bb96abd85ea4aa","id":"INTERVALS-0019311","index":19311,"input":{"contigs":{"synthetic_A":1381,"synthetic_B":1783},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":525,"start":458,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":519,"start":465,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":859,"start":754,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1021,"start":978,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":817,"start":785,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1310,"start":1239,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1260,"start":1181,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":816,"start":769,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":39,"start":6,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":446,"start":393,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":533,"start":435,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1156,"start":1128,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":520,"start":463,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":69},{"feature_index":1,"overlap_bases":67},{"feature_index":2,"overlap_bases":49},{"feature_index":5,"overlap_bases":36}],"query_bed":[37,106],"query_length":69,"union_overlap_bases":69},"family":"nested","fingerprint":"dbc51baab67086391dc6412d873f3c66e3b4011b20c68d136ac27b99cf2ea656","group_id":"dbc51baab67086391dc6412d873f3c66e3b4011b20c68d136ac27b99cf2ea656","id":"INTERVALS-0019316","index":19316,"input":{"contigs":{"synthetic_A":1008,"synthetic_B":752},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":111,"start":32,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":105,"start":38,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":105,"start":57,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":357,"start":317,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":413,"start":402,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":75,"start":40,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":268,"start":184,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":433,"start":315,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":106,"start":38,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":66},{"feature_index":4,"overlap_bases":24},{"feature_index":7,"overlap_bases":28}],"query_bed":[463,529],"query_length":66,"union_overlap_bases":66},"family":"stranded","fingerprint":"5198710c0663ed546516641b5091e135c576b116d3da2655ddddb7e5fda182e0","group_id":"5198710c0663ed546516641b5091e135c576b116d3da2655ddddb7e5fda182e0","id":"INTERVALS-0019318","index":19318,"input":{"contigs":{"synthetic_A":1716,"synthetic_B":1750},"features":[{"basis":"one_closed","contig":"synthetic_A","end":529,"start":464,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":529,"start":464,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":340,"start":227,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":49,"start":41,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":589,"start":505,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":110,"start":63,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":116,"start":21,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":574,"start":502,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":578,"start":567,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1240,"start":1208,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":529,"start":463,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":41},{"feature_index":2,"overlap_bases":2}],"query_bed":[577,619],"query_length":42,"union_overlap_bases":42},"family":"overlapping_blocks","fingerprint":"71b0e82a07062d951d7b8910eec1b889f584c80a917e963104f06d6fc51e6bf8","group_id":"71b0e82a07062d951d7b8910eec1b889f584c80a917e963104f06d6fc51e6bf8","id":"INTERVALS-0019327","index":19327,"input":{"contigs":{"synthetic_A":645,"synthetic_B":1797},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":580,"start":574,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":619,"start":579,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":622,"start":618,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":392,"start":365,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":140,"start":96,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":715,"start":633,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":619,"start":577,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":39}],"query_bed":[393,432],"query_length":39,"union_overlap_bases":39},"family":"stranded","fingerprint":"e7a94fa48276639653991e7c12633e5147238dbe0ede31fcd44a0853a9458e4a","group_id":"e7a94fa48276639653991e7c12633e5147238dbe0ede31fcd44a0853a9458e4a","id":"INTERVALS-0019338","index":19338,"input":{"contigs":{"synthetic_A":993,"synthetic_B":1255},"features":[{"basis":"one_closed","contig":"synthetic_A","end":432,"start":394,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":432,"start":393,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":716,"start":650,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1118,"start":1111,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":575,"start":572,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":133,"start":130,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1049,"start":981,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":312,"start":230,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":431,"start":319,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":432,"start":393,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":22},{"feature_index":2,"overlap_bases":7}],"query_bed":[531,553],"query_length":22,"union_overlap_bases":22},"family":"coordinate_conversion","fingerprint":"4350961066e9898b2a32a8eb62843a3957656783208eb258d62428edf2db23ee","group_id":"4350961066e9898b2a32a8eb62843a3957656783208eb258d62428edf2db23ee","id":"INTERVALS-0019339","index":19339,"input":{"contigs":{"synthetic_A":1236,"synthetic_B":1393},"features":[{"basis":"one_closed","contig":"synthetic_B","end":553,"start":532,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":848,"start":735,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":631,"start":547,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":590,"start":515,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1062,"start":985,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1012,"start":924,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":298,"start":272,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":197,"start":113,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1250,"start":1186,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":631,"start":625,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1127,"start":1127,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":553,"start":532,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":2,"overlap_bases":28}],"query_bed":[424,464],"query_length":40,"union_overlap_bases":28},"family":"touching_boundary","fingerprint":"83babd16d2cc76c3af7475b98a8c4f9c50ca574f04ac0ebd5a24fa629a763af3","group_id":"83babd16d2cc76c3af7475b98a8c4f9c50ca574f04ac0ebd5a24fa629a763af3","id":"INTERVALS-0019340","index":19340,"input":{"contigs":{"synthetic_A":709,"synthetic_B":1619},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":424,"start":415,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":500,"start":465,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":513,"start":437,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":405,"start":386,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":192,"start":101,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":34,"start":3,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":791,"start":744,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":363,"start":257,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":242,"start":150,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":677,"start":620,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":626,"start":583,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":626,"start":586,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":464,"start":424,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":6},{"feature_index":2,"overlap_bases":2}],"query_bed":[318,325],"query_length":7,"union_overlap_bases":7},"family":"overlapping_blocks","fingerprint":"6db739c2e06479e12b49ebbf6542ca122a789d70b8ab97efedd460f529b8e089","group_id":"6db739c2e06479e12b49ebbf6542ca122a789d70b8ab97efedd460f529b8e089","id":"INTERVALS-0019357","index":19357,"input":{"contigs":{"synthetic_A":950,"synthetic_B":1562},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":321,"start":315,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":325,"start":319,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":328,"start":324,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1282,"start":1204,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":143,"start":62,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":123,"start":116,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":559,"start":556,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":314,"start":199,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":495,"start":403,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":620,"start":606,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":325,"start":319,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":29}],"query_bed":[84,113],"query_length":29,"union_overlap_bases":29},"family":"stranded","fingerprint":"dbd7e6184a4822b6a0ce9e3a26f8680db7587f4172f681231477700bc86523aa","group_id":"dbd7e6184a4822b6a0ce9e3a26f8680db7587f4172f681231477700bc86523aa","id":"INTERVALS-0019358","index":19358,"input":{"contigs":{"synthetic_A":758,"synthetic_B":1117},"features":[{"basis":"one_closed","contig":"synthetic_B","end":113,"start":85,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":113,"start":85,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":386,"start":291,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":684,"start":623,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":63,"start":55,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":967,"start":941,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":113,"start":85,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":52},{"feature_index":1,"overlap_bases":50},{"feature_index":2,"overlap_bases":23}],"query_bed":[409,461],"query_length":52,"union_overlap_bases":52},"family":"nested","fingerprint":"1f414774a2bffa882209e2e76d3c14177f76c370f3c449972a121e789510d830","group_id":"1f414774a2bffa882209e2e76d3c14177f76c370f3c449972a121e789510d830","id":"INTERVALS-0019371","index":19371,"input":{"contigs":{"synthetic_A":1070,"synthetic_B":1696},"features":[{"basis":"one_closed","contig":"synthetic_A","end":466,"start":405,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":460,"start":410,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":500,"start":439,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1129,"start":1049,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":198,"start":169,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":461,"start":409,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":63},{"feature_index":2,"overlap_bases":2}],"query_bed":[113,177],"query_length":64,"union_overlap_bases":64},"family":"overlapping_blocks","fingerprint":"44fce8882ff8a4a9215c1d765cc9b4258f0891dca95859414f05ff38d39469e9","group_id":"44fce8882ff8a4a9215c1d765cc9b4258f0891dca95859414f05ff38d39469e9","id":"INTERVALS-0019392","index":19392,"input":{"contigs":{"synthetic_A":1479,"synthetic_B":1450},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":116,"start":110,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":177,"start":115,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":180,"start":175,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":731,"start":702,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":682,"start":620,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1074,"start":964,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1271,"start":1256,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":177,"start":114,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":45}],"query_bed":[283,328],"query_length":45,"union_overlap_bases":45},"family":"stranded","fingerprint":"c3b6a70482afdb85613bf3e0170d2a47ef56676a6bb109283c06597fb3212c4a","group_id":"c3b6a70482afdb85613bf3e0170d2a47ef56676a6bb109283c06597fb3212c4a","id":"INTERVALS-0019398","index":19398,"input":{"contigs":{"synthetic_A":731,"synthetic_B":1112},"features":[{"basis":"one_closed","contig":"synthetic_B","end":328,"start":284,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":328,"start":283,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":519,"start":453,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":381,"start":283,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":900,"start":850,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":236,"start":183,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":260,"start":148,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":254,"start":183,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":66,"start":52,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":477,"start":381,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":547,"start":446,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":181,"start":117,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":328,"start":284,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":18},{"feature_index":2,"overlap_bases":2}],"query_bed":[441,460],"query_length":19,"union_overlap_bases":19},"family":"overlapping_blocks","fingerprint":"962dbd68da7ffa0107641c5b75359886d4579d6b105d8028c5bc91cccb78ae74","group_id":"962dbd68da7ffa0107641c5b75359886d4579d6b105d8028c5bc91cccb78ae74","id":"INTERVALS-0019427","index":19427,"input":{"contigs":{"synthetic_A":1089,"synthetic_B":746},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":444,"start":438,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":460,"start":443,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":463,"start":458,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":124,"start":61,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":141,"start":119,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":65,"start":33,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":958,"start":895,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":182,"start":172,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":575,"start":517,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":460,"start":442,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":64}],"query_bed":[443,507],"query_length":64,"union_overlap_bases":64},"family":"stranded","fingerprint":"f121dbb465dc8d6041bc1b324811c0fd4abcd9fe183b05a72084b8a4f9ef2925","group_id":"f121dbb465dc8d6041bc1b324811c0fd4abcd9fe183b05a72084b8a4f9ef2925","id":"INTERVALS-0019428","index":19428,"input":{"contigs":{"synthetic_A":1560,"synthetic_B":1702},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":507,"start":443,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":507,"start":443,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":813,"start":747,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1031,"start":963,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1001,"start":902,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":802,"start":774,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":731,"start":701,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":21,"start":12,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":507,"start":443,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":35}],"query_bed":[652,687],"query_length":35,"union_overlap_bases":35},"family":"stranded","fingerprint":"d6aeda3e76ab90b65a58ffbdef7955906c47edda7c8ccae512938aaeda4183c0","group_id":"d6aeda3e76ab90b65a58ffbdef7955906c47edda7c8ccae512938aaeda4183c0","id":"INTERVALS-0019453","index":19453,"input":{"contigs":{"synthetic_A":1625,"synthetic_B":1493},"features":[{"basis":"one_closed","contig":"synthetic_A","end":687,"start":653,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":687,"start":652,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1249,"start":1172,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":949,"start":905,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1099,"start":1044,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":505,"start":417,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":687,"start":653,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":39}],"query_bed":[258,297],"query_length":39,"union_overlap_bases":39},"family":"stranded","fingerprint":"e78e1a543bd62508fae4c32fdef17b6111ee6feb7926291fb07f6dee455272ee","group_id":"e78e1a543bd62508fae4c32fdef17b6111ee6feb7926291fb07f6dee455272ee","id":"INTERVALS-0019463","index":19463,"input":{"contigs":{"synthetic_A":1351,"synthetic_B":667},"features":[{"basis":"one_closed","contig":"synthetic_A","end":297,"start":259,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":297,"start":259,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":534,"start":454,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":198,"start":160,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":891,"start":846,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":191,"start":74,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":194,"start":157,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":297,"start":258,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[693,728],"query_length":35,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"aa56ca96fdfca5d3633a45d1bafc7673ec54b21567b6f90e82ed407d0e386e79","group_id":"aa56ca96fdfca5d3633a45d1bafc7673ec54b21567b6f90e82ed407d0e386e79","id":"INTERVALS-0019465","index":19465,"input":{"contigs":{"synthetic_A":1670,"synthetic_B":887},"features":[{"basis":"one_closed","contig":"synthetic_A","end":693,"start":676,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":743,"start":728,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":563,"start":473,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":260,"start":182,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":539,"start":485,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":975,"start":901,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":728,"start":693,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":24}],"query_bed":[1071,1095],"query_length":24,"union_overlap_bases":24},"family":"coordinate_conversion","fingerprint":"3b0f025c7bb0473032b6c83f008550d96d3f8ac05b868c83ae9c57ba8565c2d8","group_id":"3b0f025c7bb0473032b6c83f008550d96d3f8ac05b868c83ae9c57ba8565c2d8","id":"INTERVALS-0019479","index":19479,"input":{"contigs":{"synthetic_A":1539,"synthetic_B":1073},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1095,"start":1072,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":194,"start":117,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":113,"start":91,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":562,"start":467,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1493,"start":1407,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":475,"start":448,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":46,"start":25,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1459,"start":1416,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":711,"start":703,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":898,"start":801,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":848,"start":796,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":667,"start":652,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1095,"start":1072,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":23}],"query_bed":[710,733],"query_length":23,"union_overlap_bases":23},"family":"stranded","fingerprint":"a1d873243fea9d54e0705e1619dccf2d686e49553520c3cbbc0b97cd2e151fca","group_id":"a1d873243fea9d54e0705e1619dccf2d686e49553520c3cbbc0b97cd2e151fca","id":"INTERVALS-0019483","index":19483,"input":{"contigs":{"synthetic_A":1362,"synthetic_B":1075},"features":[{"basis":"one_closed","contig":"synthetic_B","end":733,"start":711,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":733,"start":710,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":42,"start":36,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":147,"start":90,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":447,"start":383,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":404,"start":374,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":384,"start":276,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":733,"start":711,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":3,"overlap_bases":3}],"query_bed":[207,220],"query_length":13,"union_overlap_bases":3},"family":"touching_boundary","fingerprint":"1cf751f2dd9438beb442d5793f6c48f708d3fc94d825dd50389339dd13625476","group_id":"1cf751f2dd9438beb442d5793f6c48f708d3fc94d825dd50389339dd13625476","id":"INTERVALS-0019490","index":19490,"input":{"contigs":{"synthetic_A":1027,"synthetic_B":819},"features":[{"basis":"one_closed","contig":"synthetic_B","end":207,"start":191,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":253,"start":220,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":392,"start":383,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":210,"start":191,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":678,"start":677,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":604,"start":571,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":118,"start":14,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":172,"start":146,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":59,"start":7,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":43,"start":18,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":220,"start":208,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":24},{"feature_index":2,"overlap_bases":2}],"query_bed":[114,139],"query_length":25,"union_overlap_bases":25},"family":"overlapping_blocks","fingerprint":"33ae5120c236f5c1d57eb27e9f0bb79d31240071065afde59e7e4c59b03f8ae7","group_id":"33ae5120c236f5c1d57eb27e9f0bb79d31240071065afde59e7e4c59b03f8ae7","id":"INTERVALS-0019492","index":19492,"input":{"contigs":{"synthetic_A":886,"synthetic_B":1653},"features":[{"basis":"one_closed","contig":"synthetic_B","end":117,"start":112,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":139,"start":115,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":142,"start":137,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":481,"start":462,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1054,"start":1030,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":139,"start":115,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":77}],"query_bed":[631,708],"query_length":77,"union_overlap_bases":77},"family":"stranded","fingerprint":"a7a75f4053a832daaf4e46c9ac6f00096b4837623d6ed4a764ccc7f7e8825251","group_id":"a7a75f4053a832daaf4e46c9ac6f00096b4837623d6ed4a764ccc7f7e8825251","id":"INTERVALS-0019493","index":19493,"input":{"contigs":{"synthetic_A":1662,"synthetic_B":1213},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":708,"start":631,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":708,"start":632,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1060,"start":966,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":246,"start":233,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":728,"start":715,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":708,"start":631,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":48},{"feature_index":2,"overlap_bases":2}],"query_bed":[122,171],"query_length":49,"union_overlap_bases":49},"family":"overlapping_blocks","fingerprint":"8d75154070307c7da04ab5b9bb28e4480c79f7bbea5dde837635786535677e6e","group_id":"8d75154070307c7da04ab5b9bb28e4480c79f7bbea5dde837635786535677e6e","id":"INTERVALS-0019512","index":19512,"input":{"contigs":{"synthetic_A":1234,"synthetic_B":1230},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":125,"start":119,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":171,"start":124,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":174,"start":169,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":810,"start":718,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":53,"start":15,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1089,"start":1032,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1050,"start":1042,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":633,"start":551,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":171,"start":123,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":46},{"feature_index":4,"overlap_bases":36}],"query_bed":[752,798],"query_length":46,"union_overlap_bases":46},"family":"coordinate_conversion","fingerprint":"b6b72196b6f900c40e144ca9d61b5471ce41355f2ad4e52911a6f2c55ccf79a4","group_id":"b6b72196b6f900c40e144ca9d61b5471ce41355f2ad4e52911a6f2c55ccf79a4","id":"INTERVALS-0019514","index":19514,"input":{"contigs":{"synthetic_A":1660,"synthetic_B":1467},"features":[{"basis":"one_closed","contig":"synthetic_A","end":798,"start":753,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":630,"start":534,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1263,"start":1163,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":182,"start":117,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":834,"start":763,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1132,"start":1067,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":798,"start":753,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":12}],"query_bed":[1079,1091],"query_length":12,"union_overlap_bases":12},"family":"coordinate_conversion","fingerprint":"c84099603ae2a7ff1ce87e54d6a7c752b20e9a02daa3de52d053791cae0deefa","group_id":"c84099603ae2a7ff1ce87e54d6a7c752b20e9a02daa3de52d053791cae0deefa","id":"INTERVALS-0019519","index":19519,"input":{"contigs":{"synthetic_A":1755,"synthetic_B":1474},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1091,"start":1080,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":117,"start":16,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":372,"start":339,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":777,"start":751,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":605,"start":530,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":808,"start":782,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":276,"start":177,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1210,"start":1133,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1527,"start":1494,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":929,"start":919,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":479,"start":413,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":506,"start":500,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1091,"start":1080,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[231,236],"query_length":5,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"fbddce3250fbd86a489d5a06a71e6b0a559af3912d296c887e9dab294c2161d0","group_id":"fbddce3250fbd86a489d5a06a71e6b0a559af3912d296c887e9dab294c2161d0","id":"INTERVALS-0019530","index":19530,"input":{"contigs":{"synthetic_A":770,"synthetic_B":780},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":231,"start":222,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":241,"start":237,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":745,"start":658,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":361,"start":358,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":361,"start":256,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":417,"start":416,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":662,"start":624,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":571,"start":565,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":270,"start":238,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":634,"start":547,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":496,"start":431,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":171,"start":152,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":236,"start":232,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":32},{"feature_index":1,"overlap_bases":30}],"query_bed":[149,181],"query_length":32,"union_overlap_bases":32},"family":"nested","fingerprint":"7201a3f0e5a8de870137e97388720e3518429bee91bf5febd125a1fee9cb61d7","group_id":"7201a3f0e5a8de870137e97388720e3518429bee91bf5febd125a1fee9cb61d7","id":"INTERVALS-0019556","index":19556,"input":{"contigs":{"synthetic_A":696,"synthetic_B":818},"features":[{"basis":"one_closed","contig":"synthetic_A","end":186,"start":145,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":180,"start":151,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":231,"start":132,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":378,"start":336,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":115,"start":16,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":124,"start":76,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":373,"start":291,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":318,"start":230,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":468,"start":416,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":174,"start":153,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":183,"start":141,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":181,"start":150,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":21},{"feature_index":2,"overlap_bases":15}],"query_bed":[1068,1089],"query_length":21,"union_overlap_bases":21},"family":"stranded","fingerprint":"cb7633ce795b41363f952f2372cc28032047eb71d96188efe01ca3fa45e827ba","group_id":"cb7633ce795b41363f952f2372cc28032047eb71d96188efe01ca3fa45e827ba","id":"INTERVALS-0019563","index":19563,"input":{"contigs":{"synthetic_A":823,"synthetic_B":1292},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1089,"start":1068,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1089,"start":1069,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1083,"start":963,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":402,"start":327,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1021,"start":982,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":380,"start":346,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":133,"start":101,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":360,"start":305,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":697,"start":669,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":841,"start":777,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":1089,"start":1069,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":57},{"feature_index":2,"overlap_bases":7},{"feature_index":5,"overlap_bases":6}],"query_bed":[539,596],"query_length":57,"union_overlap_bases":57},"family":"coordinate_conversion","fingerprint":"8bdb44fccfdfed063cefc4fd05433e13b7450f742bb54bf79ca360bd554b68b5","group_id":"8bdb44fccfdfed063cefc4fd05433e13b7450f742bb54bf79ca360bd554b68b5","id":"INTERVALS-0019564","index":19564,"input":{"contigs":{"synthetic_A":1174,"synthetic_B":1477},"features":[{"basis":"one_closed","contig":"synthetic_A","end":596,"start":540,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":79,"start":17,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":546,"start":441,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1446,"start":1338,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":667,"start":661,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":600,"start":591,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":596,"start":540,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":39}],"query_bed":[375,414],"query_length":39,"union_overlap_bases":39},"family":"stranded","fingerprint":"9e66b9584f9589c6cbe3d4f257b6a958ba9203ddb5962c60b50106b91dfb9c75","group_id":"9e66b9584f9589c6cbe3d4f257b6a958ba9203ddb5962c60b50106b91dfb9c75","id":"INTERVALS-0019583","index":19583,"input":{"contigs":{"synthetic_A":1615,"synthetic_B":863},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":414,"start":375,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":414,"start":375,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":305,"start":222,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":725,"start":670,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":195,"start":135,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":414,"start":376,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[29,94],"query_length":65,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"5e8d3500b2740b7c5b7e9ba5001477962727287d3bb89deb140a450939e68da8","group_id":"5e8d3500b2740b7c5b7e9ba5001477962727287d3bb89deb140a450939e68da8","id":"INTERVALS-0019600","index":19600,"input":{"contigs":{"synthetic_A":1040,"synthetic_B":1304},"features":[{"basis":"one_closed","contig":"synthetic_B","end":29,"start":17,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":104,"start":94,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":474,"start":389,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":266,"start":234,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":835,"start":763,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":562,"start":527,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":812,"start":699,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":313,"start":307,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":94,"start":30,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[28,92],"query_length":64,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"f25a2d2e54f662e58585e969620b3882e78883dd68a1ce9d19e2c0359c6ae737","group_id":"f25a2d2e54f662e58585e969620b3882e78883dd68a1ce9d19e2c0359c6ae737","id":"INTERVALS-0019620","index":19620,"input":{"contigs":{"synthetic_A":1624,"synthetic_B":1338},"features":[{"basis":"one_closed","contig":"synthetic_B","end":28,"start":9,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":122,"start":92,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":472,"start":406,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":131,"start":19,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1416,"start":1409,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":366,"start":300,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":794,"start":726,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":631,"start":561,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1355,"start":1345,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":92,"start":28,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":28},{"feature_index":2,"overlap_bases":2}],"query_bed":[882,911],"query_length":29,"union_overlap_bases":29},"family":"overlapping_blocks","fingerprint":"68148f92244ae2ba78d0f42332001894dc4a24688fdf34327c73437747b8ed60","group_id":"68148f92244ae2ba78d0f42332001894dc4a24688fdf34327c73437747b8ed60","id":"INTERVALS-0019627","index":19627,"input":{"contigs":{"synthetic_A":1465,"synthetic_B":1053},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":885,"start":879,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":911,"start":884,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":914,"start":909,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":172,"start":90,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":750,"start":661,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":809,"start":719,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":798,"start":679,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":911,"start":883,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":8}],"query_bed":[283,291],"query_length":8,"union_overlap_bases":8},"family":"coordinate_conversion","fingerprint":"7c498db473318c13597d67278046a0a217a6ead344ed1cbfa66b8dabc0147c1c","group_id":"7c498db473318c13597d67278046a0a217a6ead344ed1cbfa66b8dabc0147c1c","id":"INTERVALS-0019629","index":19629,"input":{"contigs":{"synthetic_A":856,"synthetic_B":1607},"features":[{"basis":"one_closed","contig":"synthetic_A","end":291,"start":284,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":669,"start":585,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":282,"start":266,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1388,"start":1345,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1553,"start":1471,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":878,"start":867,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":692,"start":678,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":504,"start":430,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":790,"start":765,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":459,"start":395,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1418,"start":1397,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1039,"start":1011,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":291,"start":284,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":65},{"feature_index":1,"overlap_bases":63}],"query_bed":[157,222],"query_length":65,"union_overlap_bases":65},"family":"nested","fingerprint":"c0d6a78ce46a8f4d8bb7e4da2289f3ba9977d6b8640aa84da855ffa6c05da8f0","group_id":"c0d6a78ce46a8f4d8bb7e4da2289f3ba9977d6b8640aa84da855ffa6c05da8f0","id":"INTERVALS-0019636","index":19636,"input":{"contigs":{"synthetic_A":1191,"synthetic_B":1419},"features":[{"basis":"one_closed","contig":"synthetic_A","end":227,"start":153,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":221,"start":158,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":130,"start":10,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":163,"start":75,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":925,"start":885,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":253,"start":140,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":50,"start":32,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":753,"start":645,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":724,"start":709,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":154,"start":67,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":625,"start":539,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":222,"start":158,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[208,228],"query_length":20,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"a792f7e4446ea5ecdffd64f01dd1dc1b1ab02fbee021b27fc37152a8bf2edc23","group_id":"a792f7e4446ea5ecdffd64f01dd1dc1b1ab02fbee021b27fc37152a8bf2edc23","id":"INTERVALS-0019650","index":19650,"input":{"contigs":{"synthetic_A":1142,"synthetic_B":1216},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":208,"start":199,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":236,"start":229,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":638,"start":573,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":362,"start":253,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":632,"start":514,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":776,"start":705,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":947,"start":902,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":815,"start":737,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":929,"start":894,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":228,"start":208,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":9}],"query_bed":[762,771],"query_length":9,"union_overlap_bases":9},"family":"stranded","fingerprint":"a6596b88f01f3ab873474f84b3e907d74b272ad94680ca55a9955bec9a411f77","group_id":"a6596b88f01f3ab873474f84b3e907d74b272ad94680ca55a9955bec9a411f77","id":"INTERVALS-0019658","index":19658,"input":{"contigs":{"synthetic_A":1432,"synthetic_B":1760},"features":[{"basis":"one_closed","contig":"synthetic_B","end":771,"start":763,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":771,"start":763,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":430,"start":349,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":943,"start":928,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1127,"start":1037,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":342,"start":278,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":771,"start":763,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[71,83],"query_length":12,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"cd9c459e9d6a107ff61af845f732b4196fbe995dde77b89c376db11fe9c0105a","group_id":"cd9c459e9d6a107ff61af845f732b4196fbe995dde77b89c376db11fe9c0105a","id":"INTERVALS-0019670","index":19670,"input":{"contigs":{"synthetic_A":691,"synthetic_B":1624},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":71,"start":70,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":104,"start":84,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":331,"start":290,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":194,"start":81,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":546,"start":535,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":83,"start":72,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":44}],"query_bed":[434,478],"query_length":44,"union_overlap_bases":44},"family":"coordinate_conversion","fingerprint":"4efb91b84eb903c8db93cb04e68be069f26bc77ce1b9d9bd0864f44b2edf8c61","group_id":"4efb91b84eb903c8db93cb04e68be069f26bc77ce1b9d9bd0864f44b2edf8c61","id":"INTERVALS-0019689","index":19689,"input":{"contigs":{"synthetic_A":1696,"synthetic_B":696},"features":[{"basis":"one_closed","contig":"synthetic_B","end":478,"start":435,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":459,"start":368,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":495,"start":384,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":476,"start":454,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1606,"start":1538,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":43,"start":27,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1152,"start":1051,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":162,"start":45,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":478,"start":435,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":35},{"feature_index":1,"overlap_bases":33}],"query_bed":[853,888],"query_length":35,"union_overlap_bases":35},"family":"nested","fingerprint":"030abfb808d808ef2fefff769ac42c5f36967876aeadfab3ef9ffabf7a1daeef","group_id":"030abfb808d808ef2fefff769ac42c5f36967876aeadfab3ef9ffabf7a1daeef","id":"INTERVALS-0019701","index":19701,"input":{"contigs":{"synthetic_A":1020,"synthetic_B":1205},"features":[{"basis":"one_closed","contig":"synthetic_B","end":893,"start":849,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":887,"start":855,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1032,"start":1027,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":766,"start":711,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1130,"start":1062,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":445,"start":368,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":537,"start":502,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":757,"start":642,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":163,"start":142,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":888,"start":853,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":76},{"feature_index":1,"overlap_bases":74}],"query_bed":[729,805],"query_length":76,"union_overlap_bases":76},"family":"nested","fingerprint":"59e76192d717101f836ce71a14520c31bb2514b6596a96d4b1bb92904319a595","group_id":"59e76192d717101f836ce71a14520c31bb2514b6596a96d4b1bb92904319a595","id":"INTERVALS-0019716","index":19716,"input":{"contigs":{"synthetic_A":1367,"synthetic_B":1782},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":810,"start":724,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":804,"start":730,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":588,"start":570,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":113,"start":110,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":511,"start":499,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":782,"start":712,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":89,"start":28,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":805,"start":729,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":41},{"feature_index":2,"overlap_bases":2}],"query_bed":[228,270],"query_length":42,"union_overlap_bases":42},"family":"overlapping_blocks","fingerprint":"04672608488c814bc96dbf49e85c283fe3c16389f42d9fdd8b5ff71821ceb1b3","group_id":"04672608488c814bc96dbf49e85c283fe3c16389f42d9fdd8b5ff71821ceb1b3","id":"INTERVALS-0019727","index":19727,"input":{"contigs":{"synthetic_A":744,"synthetic_B":810},"features":[{"basis":"one_closed","contig":"synthetic_A","end":231,"start":226,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":270,"start":229,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":273,"start":269,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":520,"start":433,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":308,"start":276,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":739,"start":670,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":80,"start":78,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":579,"start":501,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":270,"start":228,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":66}],"query_bed":[537,603],"query_length":66,"union_overlap_bases":66},"family":"coordinate_conversion","fingerprint":"a045818c5a6191dc0e88ade3e18659cf999e7f8e571d3e6a270baaffc56746c9","group_id":"a045818c5a6191dc0e88ade3e18659cf999e7f8e571d3e6a270baaffc56746c9","id":"INTERVALS-0019729","index":19729,"input":{"contigs":{"synthetic_A":1620,"synthetic_B":1422},"features":[{"basis":"one_closed","contig":"synthetic_B","end":603,"start":538,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":909,"start":841,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":727,"start":655,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":492,"start":443,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1272,"start":1221,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1186,"start":1114,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":866,"start":800,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":229,"start":221,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":332,"start":225,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":928,"start":867,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":248,"start":235,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":244,"start":156,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":603,"start":538,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":36}],"query_bed":[1416,1452],"query_length":36,"union_overlap_bases":36},"family":"coordinate_conversion","fingerprint":"a0a41cec647c023411f7e506dd5895ef37e67fcefcc3af8cc79e91941c071342","group_id":"a0a41cec647c023411f7e506dd5895ef37e67fcefcc3af8cc79e91941c071342","id":"INTERVALS-0019734","index":19734,"input":{"contigs":{"synthetic_A":1776,"synthetic_B":1220},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1452,"start":1417,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":72,"start":8,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1101,"start":993,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":136,"start":39,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":347,"start":231,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":148,"start":130,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1191,"start":1106,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":148,"start":56,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":97,"start":79,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":615,"start":504,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1452,"start":1417,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":43},{"feature_index":2,"overlap_bases":2},{"feature_index":6,"overlap_bases":3}],"query_bed":[111,155],"query_length":44,"union_overlap_bases":44},"family":"overlapping_blocks","fingerprint":"47546a20a4c97dade9bf0dc644143e42b7a996a703a9f470fec869a66e5add6d","group_id":"47546a20a4c97dade9bf0dc644143e42b7a996a703a9f470fec869a66e5add6d","id":"INTERVALS-0019752","index":19752,"input":{"contigs":{"synthetic_A":922,"synthetic_B":987},"features":[{"basis":"one_closed","contig":"synthetic_A","end":114,"start":109,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":155,"start":112,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":158,"start":153,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":796,"start":732,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":328,"start":220,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":177,"start":78,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":114,"start":24,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":229,"start":189,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":727,"start":649,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":462,"start":358,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":381,"start":376,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":162,"start":129,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":155,"start":112,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":52}],"query_bed":[691,743],"query_length":52,"union_overlap_bases":52},"family":"stranded","fingerprint":"df58c8de4c5e1f9f1d0fdc3e8f03d7477c0ada0176b3ed21dc5ec5fdfb9ace26","group_id":"df58c8de4c5e1f9f1d0fdc3e8f03d7477c0ada0176b3ed21dc5ec5fdfb9ace26","id":"INTERVALS-0019753","index":19753,"input":{"contigs":{"synthetic_A":1366,"synthetic_B":1205},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":743,"start":691,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":743,"start":691,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1012,"start":916,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1185,"start":1149,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":615,"start":508,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":872,"start":776,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":553,"start":534,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":263,"start":194,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":743,"start":691,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":3,"overlap_bases":21}],"query_bed":[125,195],"query_length":70,"union_overlap_bases":21},"family":"touching_boundary","fingerprint":"4b555d50b4930cbb79d1dbb33916601991d3c1a357af9e3e6bda5b729df8f1de","group_id":"4b555d50b4930cbb79d1dbb33916601991d3c1a357af9e3e6bda5b729df8f1de","id":"INTERVALS-0019765","index":19765,"input":{"contigs":{"synthetic_A":1381,"synthetic_B":1124},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":125,"start":124,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":232,"start":196,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":327,"start":226,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":181,"start":161,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1109,"start":989,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":871,"start":840,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":195,"start":126,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":79}],"query_bed":[922,1001],"query_length":79,"union_overlap_bases":79},"family":"stranded","fingerprint":"e11199da489f9a0ff88cd3ed62a32896126b6a0c32b19dddee68573bd3e81219","group_id":"e11199da489f9a0ff88cd3ed62a32896126b6a0c32b19dddee68573bd3e81219","id":"INTERVALS-0019768","index":19768,"input":{"contigs":{"synthetic_A":1185,"synthetic_B":1122},"features":[{"basis":"one_closed","contig":"synthetic_B","end":1001,"start":923,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1001,"start":923,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":776,"start":773,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":521,"start":517,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":707,"start":591,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":163,"start":145,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1001,"start":922,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":47},{"feature_index":1,"overlap_bases":47}],"query_bed":[345,392],"query_length":47,"union_overlap_bases":47},"family":"coordinate_conversion","fingerprint":"e1b81d8c7ce95888abd4d170c5733590f381a9c43535982410d747d0c88e3c9b","group_id":"e1b81d8c7ce95888abd4d170c5733590f381a9c43535982410d747d0c88e3c9b","id":"INTERVALS-0019774","index":19774,"input":{"contigs":{"synthetic_A":1731,"synthetic_B":1187},"features":[{"basis":"one_closed","contig":"synthetic_A","end":392,"start":346,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":458,"start":346,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":593,"start":503,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1194,"start":1170,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1400,"start":1359,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":166,"start":89,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1440,"start":1366,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":729,"start":657,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":83,"start":42,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":392,"start":346,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":61},{"feature_index":2,"overlap_bases":2},{"feature_index":5,"overlap_bases":17}],"query_bed":[595,657],"query_length":62,"union_overlap_bases":62},"family":"overlapping_blocks","fingerprint":"eda367a0884c5c312043c648c7c2d9b663d50606029c8488654dac66830a90cb","group_id":"eda367a0884c5c312043c648c7c2d9b663d50606029c8488654dac66830a90cb","id":"INTERVALS-0019787","index":19787,"input":{"contigs":{"synthetic_A":859,"synthetic_B":1215},"features":[{"basis":"one_closed","contig":"synthetic_A","end":598,"start":593,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":657,"start":597,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":660,"start":655,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":928,"start":868,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":34,"start":16,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":659,"start":640,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":657,"start":596,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[867,931],"query_length":64,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"3e0cb6fc550ce6534d25888c480d83ec42191b82e1fde1db1ae2792533e561fd","group_id":"3e0cb6fc550ce6534d25888c480d83ec42191b82e1fde1db1ae2792533e561fd","id":"INTERVALS-0019795","index":19795,"input":{"contigs":{"synthetic_A":1200,"synthetic_B":1437},"features":[{"basis":"one_closed","contig":"synthetic_A","end":867,"start":849,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":966,"start":931,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1275,"start":1184,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":578,"start":493,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":435,"start":376,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":931,"start":868,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":37}],"query_bed":[865,902],"query_length":37,"union_overlap_bases":37},"family":"stranded","fingerprint":"fb4a8bae5223eb380a8b8029ce2b4073f67780f8971f2af6190d588cda628c29","group_id":"fb4a8bae5223eb380a8b8029ce2b4073f67780f8971f2af6190d588cda628c29","id":"INTERVALS-0019798","index":19798,"input":{"contigs":{"synthetic_A":1736,"synthetic_B":1495},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":902,"start":865,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":902,"start":866,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1623,"start":1525,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":208,"start":168,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1158,"start":1072,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1077,"start":1035,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":967,"start":894,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":318,"start":282,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":902,"start":865,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[736,748],"query_length":12,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"23e0ec26a449ac945be87b8a161eeeb8fb6ada307d68f7b42238b919c5452067","group_id":"23e0ec26a449ac945be87b8a161eeeb8fb6ada307d68f7b42238b919c5452067","id":"INTERVALS-0019805","index":19805,"input":{"contigs":{"synthetic_A":1093,"synthetic_B":1598},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":736,"start":729,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":757,"start":749,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1332,"start":1278,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":599,"start":579,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1285,"start":1264,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1351,"start":1295,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1474,"start":1363,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":545,"start":534,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":431,"start":368,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1210,"start":1159,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":748,"start":737,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[992,1046],"query_length":54,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"631ac78681b26f0f5281a07e81508ee5d22474bec90ef5586bf70756e2a022a8","group_id":"631ac78681b26f0f5281a07e81508ee5d22474bec90ef5586bf70756e2a022a8","id":"INTERVALS-0019810","index":19810,"input":{"contigs":{"synthetic_A":1412,"synthetic_B":1097},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":992,"start":979,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1056,"start":1046,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":199,"start":120,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":572,"start":501,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":213,"start":121,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":570,"start":554,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":923,"start":881,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":614,"start":591,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":139,"start":89,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1046,"start":992,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":34},{"feature_index":1,"overlap_bases":32}],"query_bed":[695,729],"query_length":34,"union_overlap_bases":34},"family":"nested","fingerprint":"e84f35f4fe6cbb38b9134e64f36107ae4be232b6d716c8972badfcd928adc263","group_id":"e84f35f4fe6cbb38b9134e64f36107ae4be232b6d716c8972badfcd928adc263","id":"INTERVALS-0019811","index":19811,"input":{"contigs":{"synthetic_A":1129,"synthetic_B":1287},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":734,"start":690,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":728,"start":697,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1098,"start":992,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1015,"start":973,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1168,"start":1071,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":729,"start":696,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":23}],"query_bed":[167,190],"query_length":23,"union_overlap_bases":23},"family":"stranded","fingerprint":"d24ecf943154e2ef128a0848f532d5d4e86e66173888e1bd0fd0b9a1d585cbb6","group_id":"d24ecf943154e2ef128a0848f532d5d4e86e66173888e1bd0fd0b9a1d585cbb6","id":"INTERVALS-0019823","index":19823,"input":{"contigs":{"synthetic_A":914,"synthetic_B":817},"features":[{"basis":"one_closed","contig":"synthetic_B","end":190,"start":168,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":190,"start":168,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":71,"start":53,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":347,"start":260,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":619,"start":531,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":871,"start":771,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":463,"start":410,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":635,"start":525,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":273,"start":229,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":70,"start":7,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":190,"start":168,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":37}],"query_bed":[504,541],"query_length":37,"union_overlap_bases":37},"family":"coordinate_conversion","fingerprint":"cdb766a8d3ea68a11d5ecc863ca3af3b0b827df34bf7aa260d42ec6c80d93720","group_id":"cdb766a8d3ea68a11d5ecc863ca3af3b0b827df34bf7aa260d42ec6c80d93720","id":"INTERVALS-0019829","index":19829,"input":{"contigs":{"synthetic_A":1605,"synthetic_B":1505},"features":[{"basis":"one_closed","contig":"synthetic_B","end":541,"start":505,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":830,"start":805,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":162,"start":124,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":933,"start":836,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":84,"start":17,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":268,"start":231,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1091,"start":1030,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1228,"start":1134,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":384,"start":278,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":541,"start":505,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":48},{"feature_index":2,"overlap_bases":2}],"query_bed":[1570,1619],"query_length":49,"union_overlap_bases":49},"family":"overlapping_blocks","fingerprint":"377e64161e503065c0826a1ede7f12424df46c4b596aeca7691376e307d7df09","group_id":"377e64161e503065c0826a1ede7f12424df46c4b596aeca7691376e307d7df09","id":"INTERVALS-0019852","index":19852,"input":{"contigs":{"synthetic_A":1783,"synthetic_B":1539},"features":[{"basis":"one_closed","contig":"synthetic_A","end":1573,"start":1568,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1619,"start":1572,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1622,"start":1617,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1389,"start":1298,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":783,"start":750,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":403,"start":354,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1446,"start":1397,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1260,"start":1194,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1274,"start":1154,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":225,"start":207,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1619,"start":1571,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":51}],"query_bed":[453,504],"query_length":51,"union_overlap_bases":51},"family":"coordinate_conversion","fingerprint":"c66e6982e16596afe0e8241fc8a1fedcca554a4e8c410b856363007909a4c636","group_id":"c66e6982e16596afe0e8241fc8a1fedcca554a4e8c410b856363007909a4c636","id":"INTERVALS-0019854","index":19854,"input":{"contigs":{"synthetic_A":1256,"synthetic_B":1795},"features":[{"basis":"one_closed","contig":"synthetic_A","end":504,"start":454,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1060,"start":1016,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":244,"start":196,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":254,"start":219,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":813,"start":762,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":539,"start":538,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1424,"start":1311,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":666,"start":634,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1005,"start":925,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":421,"start":379,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1549,"start":1543,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":304,"start":186,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":504,"start":454,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":7}],"query_bed":[1423,1430],"query_length":7,"union_overlap_bases":7},"family":"stranded","fingerprint":"0d65455acb52765d6d928252a741212de953484d5e144e9d3c56e700a78a431f","group_id":"0d65455acb52765d6d928252a741212de953484d5e144e9d3c56e700a78a431f","id":"INTERVALS-0019893","index":19893,"input":{"contigs":{"synthetic_A":1649,"synthetic_B":666},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1430,"start":1423,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1430,"start":1424,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":364,"start":293,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1456,"start":1359,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":227,"start":178,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":1430,"start":1423,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":74}],"query_bed":[605,679],"query_length":74,"union_overlap_bases":74},"family":"coordinate_conversion","fingerprint":"b789882a108a45bf2a7ca5d59d0ffa817fffe43b4ddb2afa503617551f42b9ac","group_id":"b789882a108a45bf2a7ca5d59d0ffa817fffe43b4ddb2afa503617551f42b9ac","id":"INTERVALS-0019894","index":19894,"input":{"contigs":{"synthetic_A":616,"synthetic_B":1009},"features":[{"basis":"one_closed","contig":"synthetic_B","end":679,"start":606,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":565,"start":451,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":312,"start":299,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":344,"start":233,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":175,"start":168,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":527,"start":440,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":380,"start":352,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":301,"start":264,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":679,"start":606,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":78},{"feature_index":2,"overlap_bases":2}],"query_bed":[1392,1471],"query_length":79,"union_overlap_bases":79},"family":"overlapping_blocks","fingerprint":"6902ad9e80ac41c7ddc63b19ccdb8223d5618986de39fe49cad3e582e2cf1d7a","group_id":"6902ad9e80ac41c7ddc63b19ccdb8223d5618986de39fe49cad3e582e2cf1d7a","id":"INTERVALS-0019897","index":19897,"input":{"contigs":{"synthetic_A":1756,"synthetic_B":995},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":1395,"start":1389,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1471,"start":1394,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1474,"start":1470,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":354,"start":263,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":667,"start":557,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":540,"start":435,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":758,"start":694,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":658,"start":613,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":1221,"start":1143,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1638,"start":1615,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":1536,"start":1482,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":309,"start":260,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":1471,"start":1393,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":25}],"query_bed":[330,355],"query_length":25,"union_overlap_bases":25},"family":"coordinate_conversion","fingerprint":"92c736aeeeab776c0d47c497563ce4a2d695fe73128342513d1b3bfc7ad678a5","group_id":"92c736aeeeab776c0d47c497563ce4a2d695fe73128342513d1b3bfc7ad678a5","id":"INTERVALS-0019919","index":19919,"input":{"contigs":{"synthetic_A":1290,"synthetic_B":874},"features":[{"basis":"one_closed","contig":"synthetic_B","end":355,"start":331,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":697,"start":639,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":168,"start":67,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":58,"start":29,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":312,"start":277,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1125,"start":1009,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":628,"start":531,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":346,"start":247,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":633,"start":584,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":245,"start":196,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":232,"start":170,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":446,"start":383,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":355,"start":331,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":24}],"query_bed":[885,909],"query_length":24,"union_overlap_bases":24},"family":"stranded","fingerprint":"058b1224a8a0d994f6d3047226fd6baff69a7b4775d2e46f073f4d7cf78cf797","group_id":"058b1224a8a0d994f6d3047226fd6baff69a7b4775d2e46f073f4d7cf78cf797","id":"INTERVALS-0019938","index":19938,"input":{"contigs":{"synthetic_A":1146,"synthetic_B":1310},"features":[{"basis":"one_closed","contig":"synthetic_A","end":909,"start":886,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":909,"start":885,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1029,"start":929,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":614,"start":525,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":193,"start":104,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":857,"start":754,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1027,"start":972,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":972,"start":919,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":909,"start":885,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[288,345],"query_length":57,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"68e906e6fab2062e9e7d0d51277349ad9b89fef2de315a8e00c307ab04617e87","group_id":"68e906e6fab2062e9e7d0d51277349ad9b89fef2de315a8e00c307ab04617e87","id":"INTERVALS-0019945","index":19945,"input":{"contigs":{"synthetic_A":1028,"synthetic_B":1673},"features":[{"basis":"one_closed","contig":"synthetic_A","end":288,"start":270,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":369,"start":345,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":356,"start":314,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":437,"start":427,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":528,"start":446,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":430,"start":384,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1515,"start":1445,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":75,"start":61,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":598,"start":583,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1446,"start":1348,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":169,"start":96,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":823,"start":800,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":345,"start":289,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":14},{"feature_index":1,"overlap_bases":12}],"query_bed":[517,531],"query_length":14,"union_overlap_bases":14},"family":"nested","fingerprint":"cdcb4ad861be12b470339c957ab01355f155a5ee2675bf26e556e05d3b871525","group_id":"cdcb4ad861be12b470339c957ab01355f155a5ee2675bf26e556e05d3b871525","id":"INTERVALS-0019951","index":19951,"input":{"contigs":{"synthetic_A":782,"synthetic_B":1654},"features":[{"basis":"one_closed","contig":"synthetic_A","end":536,"start":513,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":530,"start":518,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":516,"start":512,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":273,"start":166,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":551,"start":478,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":598,"start":564,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":304,"start":264,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":225,"start":133,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":1011,"start":990,"strand":"-"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":531,"start":518,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":15},{"feature_index":2,"overlap_bases":2}],"query_bed":[795,811],"query_length":16,"union_overlap_bases":16},"family":"overlapping_blocks","fingerprint":"9c9725909d4ba205a8531aa114aeb22dab426c2e0de254c8700f39df5efe53da","group_id":"9c9725909d4ba205a8531aa114aeb22dab426c2e0de254c8700f39df5efe53da","id":"INTERVALS-0019952","index":19952,"input":{"contigs":{"synthetic_A":997,"synthetic_B":1796},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":798,"start":792,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":811,"start":796,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":814,"start":810,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":412,"start":315,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":266,"start":151,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1574,"start":1501,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":260,"start":156,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1260,"start":1192,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":811,"start":795,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[],"query_bed":[184,240],"query_length":56,"union_overlap_bases":0},"family":"touching_boundary","fingerprint":"2fbb5d106ab061e80bd0c0bebccdf79b70641a8e8c7a8dae97efd2ff7cff7940","group_id":"2fbb5d106ab061e80bd0c0bebccdf79b70641a8e8c7a8dae97efd2ff7cff7940","id":"INTERVALS-0019965","index":19965,"input":{"contigs":{"synthetic_A":1042,"synthetic_B":978},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":184,"start":169,"strand":"+"},{"basis":"one_closed","contig":"synthetic_A","end":256,"start":241,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":780,"start":716,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":839,"start":795,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":564,"start":533,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_A","end":240,"start":184,"strand":"+"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":40}],"query_bed":[709,749],"query_length":40,"union_overlap_bases":40},"family":"stranded","fingerprint":"fe1731d458ffc57bbe25e4c1636a2a7498a238936f1970d000f7d9f4a267b47c","group_id":"fe1731d458ffc57bbe25e4c1636a2a7498a238936f1970d000f7d9f4a267b47c","id":"INTERVALS-0019978","index":19978,"input":{"contigs":{"synthetic_A":1661,"synthetic_B":956},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":749,"start":709,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":749,"start":710,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":494,"start":444,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":204,"start":108,"strand":"-"},{"basis":"one_closed","contig":"synthetic_A","end":1492,"start":1463,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":533,"start":513,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_B","end":749,"start":710,"strand":"+"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":28}],"query_bed":[1237,1265],"query_length":28,"union_overlap_bases":28},"family":"stranded","fingerprint":"268b696a45a3a41468ede65fb2276175477a243ffe9758bfae9f05500be46e55","group_id":"268b696a45a3a41468ede65fb2276175477a243ffe9758bfae9f05500be46e55","id":"INTERVALS-0019983","index":19983,"input":{"contigs":{"synthetic_A":1207,"synthetic_B":1797},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1265,"start":1237,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":1265,"start":1238,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":955,"start":871,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1735,"start":1670,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":1041,"start":931,"strand":"-"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1265,"start":1237,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":0,"overlap_bases":3},{"feature_index":1,"overlap_bases":30},{"feature_index":2,"overlap_bases":2}],"query_bed":[1065,1096],"query_length":31,"union_overlap_bases":31},"family":"overlapping_blocks","fingerprint":"994d10a24cdec6a12186750991a72c01ff1dd79879170470f2096246bc6f56c9","group_id":"994d10a24cdec6a12186750991a72c01ff1dd79879170470f2096246bc6f56c9","id":"INTERVALS-0019987","index":19987,"input":{"contigs":{"synthetic_A":754,"synthetic_B":1514},"features":[{"basis":"zero_half_open","contig":"synthetic_B","end":1068,"start":1062,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1096,"start":1066,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":1099,"start":1095,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":443,"start":359,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1045,"start":1002,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":282,"start":219,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":583,"start":485,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":928,"start":840,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":538,"start":524,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":252,"start":213,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":517,"start":470,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_B","end":1250,"start":1195,"strand":"+"}],"query":{"basis":"zero_half_open","contig":"synthetic_B","end":1096,"start":1065,"strand":"-"},"same_strand":false},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}
{"expected":{"matches":[{"feature_index":1,"overlap_bases":7}],"query_bed":[745,752],"query_length":7,"union_overlap_bases":7},"family":"stranded","fingerprint":"ad9820b0e08832976142b4b19b198ddd9248f6e989f790aaf0b87e141ec621f1","group_id":"ad9820b0e08832976142b4b19b198ddd9248f6e989f790aaf0b87e141ec621f1","id":"INTERVALS-0019993","index":19993,"input":{"contigs":{"synthetic_A":1035,"synthetic_B":844},"features":[{"basis":"zero_half_open","contig":"synthetic_A","end":752,"start":745,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":752,"start":745,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":539,"start":453,"strand":"+"},{"basis":"one_closed","contig":"synthetic_B","end":642,"start":610,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_B","end":252,"start":230,"strand":"+"},{"basis":"zero_half_open","contig":"synthetic_A","end":265,"start":260,"strand":"-"},{"basis":"one_closed","contig":"synthetic_B","end":111,"start":57,"strand":"-"},{"basis":"zero_half_open","contig":"synthetic_A","end":516,"start":457,"strand":"+"}],"query":{"basis":"one_closed","contig":"synthetic_A","end":752,"start":746,"strand":"-"},"same_strand":true},"provenance":{"brand":"RegalFire","contains_personal_data":false,"environment":"RegalFire intervals computational fixture v1","external_records":false,"label_source":"deterministic_computational_rules","license":"MIT","llm_ground_truth":false,"origin":"original_procedural_synthetic"},"seed":20261001,"split":"validation"}