#!/usr/bin/env python3 """Materialize original CSVs for the recovered analysis notebooks; no experiments. Default: estimate only. --write requires a new or empty destination. Seed 0 is the paper's downstream archive; all three acquisition seeds are available. """ import argparse import collections import gzip import hashlib import json from pathlib import Path import tarfile from read_acquisition_artifact import METHODS, git_blob_id def main(): p = argparse.ArgumentParser(description=__doc__) p.add_argument("--root", type=Path, default=Path(__file__).resolve().parents[1]) p.add_argument("--destination", type=Path, required=True) p.add_argument("--methods", nargs="+", choices=METHODS, default=list(METHODS)) p.add_argument("--folds", nargs="+", type=int, choices=range(5), default=list(range(5))) p.add_argument("--seeds", nargs="+", type=int, choices=range(3), default=[0]) p.add_argument("--write", action="store_true") args = p.parse_args() groups = collections.defaultdict(list) with gzip.open(args.root / "provenance/pinned_acquisition_files.jsonl.gz", "rt") as f: for line in f: rec = json.loads(line) method, fold, seed = rec["path"].split("/")[:3] if method in args.methods and int(fold[4:]) in args.folds and int(seed[4:]) in args.seeds: groups[rec["archive"]].append(rec) rows = [r for group in groups.values() for r in group] print(json.dumps({"csv_files": len(rows), "expanded_bytes": sum(r["bytes"] for r in rows), "write_requested": args.write, "acquisition_seeds": args.seeds}, indent=2)) if not args.write: return dest = args.destination.resolve() if dest.exists() and any(dest.iterdir()): raise FileExistsError("Use a new or empty destination; existing files will not be overwritten.") dest.mkdir(parents=True, exist_ok=True) for archive, group in sorted(groups.items()): needed = {r["member"] for r in group} contents = {} with tarfile.open(args.root / archive, "r:xz") as tf: for item in tf: if item.name in needed: f = tf.extractfile(item) if f is None: raise ValueError("Expected a regular CSV member") contents[item.name] = f.read() for rec in group: raw = contents[rec["member"]] if rec.get("encoding") == "final_ledger_prefix": raw = b"".join(raw.splitlines(keepends=True)[:rec["data_rows"] + 1]) if git_blob_id(raw) != rec["git_blob"] or hashlib.sha256(raw).hexdigest() != rec["sha256"]: raise ValueError("Archive integrity mismatch: " + rec["path"]) target = dest / rec["path"] if not target.resolve().is_relative_to(dest): raise ValueError("Unsafe artifact path") target.parent.mkdir(parents=True, exist_ok=True) with target.open("xb") as f: f.write(raw) print("Materialized " + archive, flush=True) if __name__ == "__main__": main()