#!/usr/bin/env python3 """Cross-check final acquisition artifacts with existing inputs and fixed folds. Checks existing data only: no docking, acquisition loop, completion, or fitting. The original CSV exporter used %.8g; comparisons respect that serialization. """ import argparse from concurrent.futures import ThreadPoolExecutor import csv import io import json import math from pathlib import Path import tarfile ALGORITHMS = ("surfdock", "unimol", "diffdock", "diffdock_l", "gnina", "autodock", "smina") def rows(raw): return list(csv.DictReader(io.StringIO(raw.decode()))) def main(): p = argparse.ArgumentParser(description=__doc__) p.add_argument("--root", type=Path, default=Path(__file__).resolve().parents[1]) p.add_argument("--report", type=Path) args = p.parse_args() root = args.root truth_rows = rows((root / "data/targets/full_strict_score_matrix.csv").read_bytes()) cost_rows = rows((root / "data/raw/moad_runtime_trimmed.csv").read_bytes()) truth = {r["PDB_CCD_ID"]: {a: float(r[a + "_strict_score"]) for a in ALGORITHMS} for r in truth_rows} costs = {r["PDB_CCD_ID"]: {a: float(r[a + "_runtime"]) for a in ALGORITHMS} for r in cost_rows} split = rows((root / "data/splits/moad_5fold_split_seed42.csv").read_bytes()) folds = {r["instance_id"]: int(r["test_fold"]) for r in split} archives = sorted((root / "results/acquisition").glob("*/fold*_seed*.tar.xz")) def compatible(actual, expected): return math.isclose(float(actual), float("%.8g" % expected), rel_tol=1e-12, abs_tol=1e-14) def check(path): fold = int(path.name.split("_")[0][4:]) seed = int(path.name.split("_")[1].split(".")[0][4:]) expected = {x for x, f in folds.items() if f != fold} wanted = {"strict_score_matrices/strict_score_100pct.csv", "queried_cells/cumulative/queried_100pct.csv"} payload = {} with tarfile.open(path, "r:xz") as tf: for item in tf: if item.name in wanted: payload[item.name] = tf.extractfile(item).read() matrix = rows(payload["strict_score_matrices/strict_score_100pct.csv"]) ledger = rows(payload["queried_cells/cumulative/queried_100pct.csv"]) ids = [r["PDB_CCD_ID"] for r in matrix] if len(ids) != len(expected) or set(ids) != expected: raise ValueError("Matrix training-fold membership mismatch: " + str(path)) for r in matrix: for a in ALGORITHMS: if not compatible(r[a], truth[r["PDB_CCD_ID"]][a]): raise ValueError("Full matrix differs from observed strict targets: " + str(path)) n = len(expected) * len(ALGORITHMS) cells = [(r["row_label"], r["algorithm"]) for r in ledger] if len(cells) != n or len(set(cells)) != n or [int(r["query_order"]) for r in ledger] != list(range(1, n + 1)): raise ValueError("Final ledger coverage/order mismatch: " + str(path)) warm = [] for r in ledger: identity, a = r["row_label"], r["algorithm"] if identity not in expected or a not in ALGORITHMS: raise ValueError("Held-out or invalid cell in acquisition ledger") if not compatible(r["score"], truth[identity][a]) or not compatible(r["runtime"], costs[identity][a]): raise ValueError("Recorded outcome/runtime differs from raw inputs: " + str(path)) if int(r["round"]) == 0: warm.append((identity, a)) return {"archive": str(path.relative_to(root)), "fold": fold, "seed": seed, "training_complexes": len(ids), "observed_cells": n, "warm_start": warm} with ThreadPoolExecutor(max_workers=4) as ex: checked = list(ex.map(check, archives)) signatures = {} for r in checked: key = (r["fold"], r["seed"]) warm = r.pop("warm_start") r["warm_start_cells"] = len(warm) if key in signatures and signatures[key] != warm: raise ValueError("Warm starts differ between policies for fold/seed " + str(key)) signatures[key] = warm if len(checked) != 90: raise ValueError("Expected 90 runs") report = {"status": "pass", "runs_checked": len(checked), "full_matrices_match_existing_strict_targets": True, "final_ledgers_cover_training_cells_exactly_once": True, "held_out_cells_in_acquisition_ledgers": 0, "recorded_scores_and_runtimes_match_inputs_at_export_precision": True, "warm_starts_match_across_six_policies_for_every_fold_seed": True, "new_experiments_executed": False, "details": checked} if args.report: args.report.write_text(json.dumps(report, indent=2) + "\n") print(json.dumps({k: v for k, v in report.items() if k != "details"}, indent=2)) if __name__ == "__main__": main()