#!/usr/bin/env python3 """Plantilla de ingesta guiada: alinea un CSV de conceptos externos a la ontología IOM de 78 nodos. No modifica data/iom_spec.json ni la ontología core. Valida que los mapped_node_id existen, comprueba consistencia de perspectiva/fase/posición y genera un CSV alineado más un informe de validación. Uso: python scripts/importar_datos_personalizados.py \ --input datasets/ingestion/templates/biologia_depredador_presa.csv \ --output datasets/ingestion/aligned/biologia_aligned.csv Opciones: --input PATH CSV de entrada (obligatorio) --output PATH CSV alineado de salida (por defecto: datasets/ingestion/aligned/_aligned.csv) --strict Fallar si hay cualquier warning (por defecto solo error en mapped_node_id inválido) --report PATH Ruta del informe JSON (por defecto junto al output) """ from __future__ import annotations import argparse import csv import json import sys from pathlib import Path from typing import Any ROOT = Path(__file__).resolve().parents[1] NODES_CSV = ROOT / "datasets" / "triad_nodes.csv" VALID_PERSPECTIVES = {"Ind", "D", "Tot", "Evol", "Invol"} VALID_PHASES = {"adv", "ret"} VALID_POSITIONS = {"left", "center", "right"} VALID_RELATIONS = {"none", "mirrorOf", "creates"} REQUIRED_COLUMNS = {"external_id", "external_label"} def load_canonical_nodes() -> dict[str, dict[str, Any]]: """Carga los 78 nodos canónicos indexados por node_id.""" if not NODES_CSV.is_file(): print( f"ERROR: no se encuentra {NODES_CSV}. " "Ejecuta primero: python scripts/generate_ontology.py", file=sys.stderr, ) raise SystemExit(1) nodes: dict[str, dict[str, Any]] = {} with NODES_CSV.open(encoding="utf-8", newline="") as fh: reader = csv.DictReader(fh) for row in reader: nodes[row["node_id"]] = row if len(nodes) != 78: print( f"ADVERTENCIA: se esperaban 78 nodos, se cargaron {len(nodes)}. " "Regenera los datasets con generate_ontology.py.", file=sys.stderr, ) return nodes def read_input_csv(path: Path) -> list[dict[str, str]]: """Lee el CSV de entrada ignorando líneas de comentario que empiezan por #.""" rows: list[dict[str, str]] = [] with path.open(encoding="utf-8", newline="") as fh: # Filtrar comentarios antes de pasar al DictReader lines = [ln for ln in fh if not ln.strip().startswith("#")] from io import StringIO reader = csv.DictReader(StringIO("".join(lines))) if reader.fieldnames is None: print("ERROR: el CSV no tiene cabecera.", file=sys.stderr) raise SystemExit(1) missing = REQUIRED_COLUMNS - set(reader.fieldnames) if missing: print(f"ERROR: faltan columnas obligatorias: {sorted(missing)}", file=sys.stderr) raise SystemExit(1) for row in reader: # Normalizar claves cleaned = {k.strip(): (v.strip() if isinstance(v, str) else v) for k, v in row.items()} if not cleaned.get("external_id"): continue rows.append(cleaned) return rows def validate_row( row: dict[str, str], nodes: dict[str, dict[str, Any]], row_num: int, ) -> tuple[dict[str, Any], list[str], list[str]]: """Valida una fila y devuelve (fila_alineada, errores, warnings).""" errors: list[str] = [] warnings: list[str] = [] aligned: dict[str, Any] = { "external_id": row["external_id"], "external_label": row.get("external_label", ""), "mapped_node_id": row.get("mapped_node_id", ""), "perspective": row.get("perspective", ""), "phase": row.get("phase", ""), "position": row.get("position", ""), "relation_candidate": row.get("relation_candidate", "none") or "none", "notes": row.get("notes", ""), "canonical_label": "", "canonical_perspective": "", "canonical_phase": "", "canonical_position": "", "status": "ok", } node_id = aligned["mapped_node_id"] if not node_id: errors.append(f"fila {row_num}: mapped_node_id vacío") aligned["status"] = "error" return aligned, errors, warnings if node_id not in nodes: errors.append( f"fila {row_num}: mapped_node_id '{node_id}' no existe en los 78 nodos canónicos" ) aligned["status"] = "error" return aligned, errors, warnings canon = nodes[node_id] aligned["canonical_label"] = canon.get("label", "") aligned["canonical_perspective"] = canon.get("perspective", "") aligned["canonical_phase"] = canon.get("phase", "") aligned["canonical_position"] = canon.get("position", "") # Consistencia opcional de perspectiva / fase / posición if aligned["perspective"] and aligned["perspective"] not in VALID_PERSPECTIVES: warnings.append( f"fila {row_num}: perspective '{aligned['perspective']}' no es canónica " f"({sorted(VALID_PERSPECTIVES)})" ) elif aligned["perspective"] and aligned["perspective"] != canon.get("perspective"): # Solo advertir si el usuario forzó un valor distinto del nodo if aligned["perspective"] in {"Ind", "D", "Tot"}: warnings.append( f"fila {row_num}: perspective declarada '{aligned['perspective']}' " f"≠ perspectiva del nodo '{canon.get('perspective')}'" ) if aligned["phase"] and aligned["phase"] not in VALID_PHASES: warnings.append( f"fila {row_num}: phase '{aligned['phase']}' no es canónica ({sorted(VALID_PHASES)})" ) elif aligned["phase"] and aligned["phase"] != canon.get("phase"): warnings.append( f"fila {row_num}: phase declarada '{aligned['phase']}' ≠ fase del nodo '{canon.get('phase')}'" ) if aligned["position"] and aligned["position"] not in VALID_POSITIONS: warnings.append( f"fila {row_num}: position '{aligned['position']}' no es canónica " f"({sorted(VALID_POSITIONS)})" ) elif aligned["position"] and aligned["position"] != canon.get("position"): warnings.append( f"fila {row_num}: position declarada '{aligned['position']}' " f"≠ posición del nodo '{canon.get('position')}'" ) if aligned["relation_candidate"] not in VALID_RELATIONS: warnings.append( f"fila {row_num}: relation_candidate '{aligned['relation_candidate']}' " f"no es válida ({sorted(VALID_RELATIONS)}); se fuerza a 'none'" ) aligned["relation_candidate"] = "none" if warnings and aligned["status"] == "ok": aligned["status"] = "warning" return aligned, errors, warnings def main() -> int: parser = argparse.ArgumentParser( description="Alinea un CSV de conceptos externos a la ontología IOM de 78 nodos." ) parser.add_argument("--input", "-i", required=True, type=Path, help="CSV de entrada") parser.add_argument( "--output", "-o", type=Path, default=None, help="CSV alineado de salida", ) parser.add_argument( "--strict", action="store_true", help="Tratar warnings como errores (exit code 1)", ) parser.add_argument( "--report", type=Path, default=None, help="Ruta del informe JSON de validación", ) args = parser.parse_args() if not args.input.is_file(): print(f"ERROR: no existe el archivo de entrada: {args.input}", file=sys.stderr) return 1 nodes = load_canonical_nodes() rows = read_input_csv(args.input) if not rows: print("ERROR: el CSV de entrada no contiene filas de datos.", file=sys.stderr) return 1 aligned_rows: list[dict[str, Any]] = [] all_errors: list[str] = [] all_warnings: list[str] = [] for i, row in enumerate(rows, start=2): # +2 por cabecera y 1-index aligned, errors, warnings = validate_row(row, nodes, i) aligned_rows.append(aligned) all_errors.extend(errors) all_warnings.extend(warnings) # Determinar rutas de salida if args.output is None: out_dir = ROOT / "datasets" / "ingestion" / "aligned" out_dir.mkdir(parents=True, exist_ok=True) args.output = out_dir / f"{args.input.stem}_aligned.csv" else: args.output.parent.mkdir(parents=True, exist_ok=True) if args.report is None: args.report = args.output.with_suffix(".report.json") # Escribir CSV alineado fieldnames = [ "external_id", "external_label", "mapped_node_id", "canonical_label", "canonical_perspective", "canonical_phase", "canonical_position", "perspective", "phase", "position", "relation_candidate", "status", "notes", ] with args.output.open("w", encoding="utf-8", newline="") as fh: writer = csv.DictWriter(fh, fieldnames=fieldnames, extrasaction="ignore") writer.writeheader() writer.writerows(aligned_rows) report = { "input": str(args.input), "output": str(args.output), "canonical_nodes": len(nodes), "rows_processed": len(aligned_rows), "errors": all_errors, "warnings": all_warnings, "ok_count": sum(1 for r in aligned_rows if r["status"] == "ok"), "warning_count": sum(1 for r in aligned_rows if r["status"] == "warning"), "error_count": sum(1 for r in aligned_rows if r["status"] == "error"), } args.report.write_text(json.dumps(report, indent=2, ensure_ascii=False) + "\n", encoding="utf-8") # Resumen en consola print(f"Entrada: {args.input}") print(f"Salida: {args.output}") print(f"Informe: {args.report}") print(f"Filas: {report['rows_processed']} " f"(ok={report['ok_count']}, warning={report['warning_count']}, error={report['error_count']})") if all_errors: print("\nERRORES:") for e in all_errors: print(f" - {e}") if all_warnings: print("\nADVERTENCIAS:") for w in all_warnings: print(f" - {w}") if all_errors: print("\nResultado: FALLO (hay errores de mapeo)") return 1 if args.strict and all_warnings: print("\nResultado: FALLO (--strict y hay advertencias)") return 1 print("\nResultado: OK — los conceptos se alinearon a la ontología canónica sin romper la bóveda.") return 0 if __name__ == "__main__": sys.exit(main())