diff --git a/.gitattributes b/.gitattributes
index f98bf80ed3142d1caeb54978590c3ba395133ae7..f9f596ccef3dfdb5ba4a251e7c9e9b0db5e8f73e 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -421,3 +421,5 @@ material/dataset/Datasets/Electron[[:space:]]Microscopy[[:space:]]Image[[:space:
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material/dataset/Datasets/Electron[[:space:]]Microscopy[[:space:]]Image[[:space:]]Masks/TiO2_Masks_Manual_4connected/1908280_m.tif filter=lfs diff=lfs merge=lfs -text
material/dataset/Datasets/Electron[[:space:]]Microscopy[[:space:]]Image[[:space:]]Masks/TiO2_Masks_Manual_4connected/1908316_m.tif filter=lfs diff=lfs merge=lfs -text
+material/dataset/Datasets/Electron[[:space:]]Microscopy[[:space:]]Image[[:space:]]Masks/TiO2_Masks_TSEM/Image_Registration/Output/1908308/1908309.tif filter=lfs diff=lfs merge=lfs -text
+material/dataset/Datasets/Electron[[:space:]]Microscopy[[:space:]]Image[[:space:]]Masks/TiO2_Masks_TSEM/Image_Registration/Input/1908324/1908324.tif filter=lfs diff=lfs merge=lfs -text
diff --git a/material/dataset/Datasets/Electron Microscopy Image Masks/TiO2_Masks_TSEM/Image_Registration/Input/1908324/1908324.tif b/material/dataset/Datasets/Electron Microscopy Image Masks/TiO2_Masks_TSEM/Image_Registration/Input/1908324/1908324.tif
new file mode 100644
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+++ b/material/dataset/Datasets/Electron Microscopy Image Masks/TiO2_Masks_TSEM/Image_Registration/Input/1908324/1908324.tif
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diff --git a/material/dataset/xpsdeeplearning/.venv/lib/python3.10/site-packages/IPython/lib/tests/test_deepreload.py b/material/dataset/xpsdeeplearning/.venv/lib/python3.10/site-packages/IPython/lib/tests/test_deepreload.py
new file mode 100644
index 0000000000000000000000000000000000000000..5da606cb8b7a4f7887ce0a45de2e227eeda05a24
--- /dev/null
+++ b/material/dataset/xpsdeeplearning/.venv/lib/python3.10/site-packages/IPython/lib/tests/test_deepreload.py
@@ -0,0 +1,57 @@
+# -*- coding: utf-8 -*-
+"""Test suite for the deepreload module."""
+
+# Copyright (c) IPython Development Team.
+# Distributed under the terms of the Modified BSD License.
+
+import types
+from pathlib import Path
+
+import pytest
+from tempfile import TemporaryDirectory
+
+from IPython.lib.deepreload import modules_reloading
+from IPython.lib.deepreload import reload as dreload
+from IPython.utils.syspathcontext import prepended_to_syspath
+
+
+def test_deepreload():
+ "Test that dreload does deep reloads and skips excluded modules."
+ with TemporaryDirectory() as tmpdir:
+ with prepended_to_syspath(tmpdir):
+ tmpdirpath = Path(tmpdir)
+ with open(tmpdirpath / "A.py", "w", encoding="utf-8") as f:
+ f.write("class Object:\n pass\nok = True\n")
+ with open(tmpdirpath / "B.py", "w", encoding="utf-8") as f:
+ f.write("import A\nassert A.ok, 'we are fine'\n")
+ import A
+ import B
+
+ # Test that A is not reloaded.
+ obj = A.Object()
+ dreload(B, exclude=["A"])
+ assert isinstance(obj, A.Object) is True
+
+ # Test that an import failure will not blow-up us.
+ A.ok = False
+ with pytest.raises(AssertionError, match="we are fine"):
+ dreload(B, exclude=["A"])
+ assert len(modules_reloading) == 0
+ assert not A.ok
+
+ # Test that A is reloaded.
+ obj = A.Object()
+ A.ok = False
+ dreload(B)
+ assert A.ok
+ assert isinstance(obj, A.Object) is False
+
+
+def test_not_module():
+ pytest.raises(TypeError, dreload, "modulename")
+
+
+def test_not_in_sys_modules():
+ fake_module = types.ModuleType("fake_module")
+ with pytest.raises(ImportError, match="not in sys.modules"):
+ dreload(fake_module)
diff --git a/material/dataset/xpsdeeplearning/.venv/lib/python3.10/site-packages/IPython/lib/tests/test_display.py b/material/dataset/xpsdeeplearning/.venv/lib/python3.10/site-packages/IPython/lib/tests/test_display.py
new file mode 100644
index 0000000000000000000000000000000000000000..f5ed34c912b396703931362f1f6de5e9b12f4e91
--- /dev/null
+++ b/material/dataset/xpsdeeplearning/.venv/lib/python3.10/site-packages/IPython/lib/tests/test_display.py
@@ -0,0 +1,272 @@
+"""Tests for IPython.lib.display.
+
+"""
+#-----------------------------------------------------------------------------
+# Copyright (c) 2012, the IPython Development Team.
+#
+# Distributed under the terms of the Modified BSD License.
+#
+# The full license is in the file COPYING.txt, distributed with this software.
+#-----------------------------------------------------------------------------
+
+#-----------------------------------------------------------------------------
+# Imports
+#-----------------------------------------------------------------------------
+from tempfile import NamedTemporaryFile, mkdtemp
+from os.path import split, join as pjoin, dirname
+import pathlib
+from unittest import TestCase, mock
+import struct
+import wave
+from io import BytesIO
+
+# Third-party imports
+import pytest
+
+try:
+ import numpy
+except ImportError:
+ pass
+
+# Our own imports
+from IPython.lib import display
+
+from IPython.testing.decorators import skipif_not_numpy
+
+#-----------------------------------------------------------------------------
+# Classes and functions
+#-----------------------------------------------------------------------------
+
+#--------------------------
+# FileLink tests
+#--------------------------
+
+def test_instantiation_FileLink():
+ """FileLink: Test class can be instantiated"""
+ fl = display.FileLink('example.txt')
+ # TODO: remove if when only Python >= 3.6 is supported
+ fl = display.FileLink(pathlib.PurePath('example.txt'))
+
+def test_warning_on_non_existent_path_FileLink():
+ """FileLink: Calling _repr_html_ on non-existent files returns a warning"""
+ fl = display.FileLink("example.txt")
+ assert fl._repr_html_().startswith("Path (example.txt)")
+
+
+def test_existing_path_FileLink():
+ """FileLink: Calling _repr_html_ functions as expected on existing filepath
+ """
+ tf = NamedTemporaryFile()
+ fl = display.FileLink(tf.name)
+ actual = fl._repr_html_()
+ expected = "%s
" % (tf.name, tf.name)
+ assert actual == expected
+
+
+def test_existing_path_FileLink_repr():
+ """FileLink: Calling repr() functions as expected on existing filepath
+ """
+ tf = NamedTemporaryFile()
+ fl = display.FileLink(tf.name)
+ actual = repr(fl)
+ expected = tf.name
+ assert actual == expected
+
+
+def test_error_on_directory_to_FileLink():
+ """FileLink: Raises error when passed directory
+ """
+ td = mkdtemp()
+ pytest.raises(ValueError, display.FileLink, td)
+
+#--------------------------
+# FileLinks tests
+#--------------------------
+
+def test_instantiation_FileLinks():
+ """FileLinks: Test class can be instantiated
+ """
+ fls = display.FileLinks('example')
+
+def test_warning_on_non_existent_path_FileLinks():
+ """FileLinks: Calling _repr_html_ on non-existent files returns a warning"""
+ fls = display.FileLinks("example")
+ assert fls._repr_html_().startswith("Path (example)")
+
+
+def test_existing_path_FileLinks():
+ """FileLinks: Calling _repr_html_ functions as expected on existing dir
+ """
+ td = mkdtemp()
+ tf1 = NamedTemporaryFile(dir=td)
+ tf2 = NamedTemporaryFile(dir=td)
+ fl = display.FileLinks(td)
+ actual = fl._repr_html_()
+ actual = actual.split('\n')
+ actual.sort()
+ # the links should always have forward slashes, even on windows, so replace
+ # backslashes with forward slashes here
+ expected = ["%s/
" % td,
+ " %s
" %\
+ (tf2.name.replace("\\","/"),split(tf2.name)[1]),
+ " %s
" %\
+ (tf1.name.replace("\\","/"),split(tf1.name)[1])]
+ expected.sort()
+ # We compare the sorted list of links here as that's more reliable
+ assert actual == expected
+
+
+def test_existing_path_FileLinks_alt_formatter():
+ """FileLinks: Calling _repr_html_ functions as expected w/ an alt formatter
+ """
+ td = mkdtemp()
+ tf1 = NamedTemporaryFile(dir=td)
+ tf2 = NamedTemporaryFile(dir=td)
+ def fake_formatter(dirname,fnames,included_suffixes):
+ return ["hello","world"]
+ fl = display.FileLinks(td,notebook_display_formatter=fake_formatter)
+ actual = fl._repr_html_()
+ actual = actual.split('\n')
+ actual.sort()
+ expected = ["hello","world"]
+ expected.sort()
+ # We compare the sorted list of links here as that's more reliable
+ assert actual == expected
+
+
+def test_existing_path_FileLinks_repr():
+ """FileLinks: Calling repr() functions as expected on existing directory """
+ td = mkdtemp()
+ tf1 = NamedTemporaryFile(dir=td)
+ tf2 = NamedTemporaryFile(dir=td)
+ fl = display.FileLinks(td)
+ actual = repr(fl)
+ actual = actual.split('\n')
+ actual.sort()
+ expected = ['%s/' % td, ' %s' % split(tf1.name)[1],' %s' % split(tf2.name)[1]]
+ expected.sort()
+ # We compare the sorted list of links here as that's more reliable
+ assert actual == expected
+
+
+def test_existing_path_FileLinks_repr_alt_formatter():
+ """FileLinks: Calling repr() functions as expected w/ alt formatter
+ """
+ td = mkdtemp()
+ tf1 = NamedTemporaryFile(dir=td)
+ tf2 = NamedTemporaryFile(dir=td)
+ def fake_formatter(dirname,fnames,included_suffixes):
+ return ["hello","world"]
+ fl = display.FileLinks(td,terminal_display_formatter=fake_formatter)
+ actual = repr(fl)
+ actual = actual.split('\n')
+ actual.sort()
+ expected = ["hello","world"]
+ expected.sort()
+ # We compare the sorted list of links here as that's more reliable
+ assert actual == expected
+
+
+def test_error_on_file_to_FileLinks():
+ """FileLinks: Raises error when passed file
+ """
+ td = mkdtemp()
+ tf1 = NamedTemporaryFile(dir=td)
+ pytest.raises(ValueError, display.FileLinks, tf1.name)
+
+
+def test_recursive_FileLinks():
+ """FileLinks: Does not recurse when recursive=False
+ """
+ td = mkdtemp()
+ tf = NamedTemporaryFile(dir=td)
+ subtd = mkdtemp(dir=td)
+ subtf = NamedTemporaryFile(dir=subtd)
+ fl = display.FileLinks(td)
+ actual = str(fl)
+ actual = actual.split('\n')
+ assert len(actual) == 4, actual
+ fl = display.FileLinks(td, recursive=False)
+ actual = str(fl)
+ actual = actual.split('\n')
+ assert len(actual) == 2, actual
+
+def test_audio_from_file():
+ path = pjoin(dirname(__file__), 'test.wav')
+ display.Audio(filename=path)
+
+class TestAudioDataWithNumpy(TestCase):
+
+ @skipif_not_numpy
+ def test_audio_from_numpy_array(self):
+ test_tone = get_test_tone()
+ audio = display.Audio(test_tone, rate=44100)
+ assert len(read_wav(audio.data)) == len(test_tone)
+
+ @skipif_not_numpy
+ def test_audio_from_list(self):
+ test_tone = get_test_tone()
+ audio = display.Audio(list(test_tone), rate=44100)
+ assert len(read_wav(audio.data)) == len(test_tone)
+
+ @skipif_not_numpy
+ def test_audio_from_numpy_array_without_rate_raises(self):
+ self.assertRaises(ValueError, display.Audio, get_test_tone())
+
+ @skipif_not_numpy
+ def test_audio_data_normalization(self):
+ expected_max_value = numpy.iinfo(numpy.int16).max
+ for scale in [1, 0.5, 2]:
+ audio = display.Audio(get_test_tone(scale), rate=44100)
+ actual_max_value = numpy.max(numpy.abs(read_wav(audio.data)))
+ assert actual_max_value == expected_max_value
+
+ @skipif_not_numpy
+ def test_audio_data_without_normalization(self):
+ max_int16 = numpy.iinfo(numpy.int16).max
+ for scale in [1, 0.5, 0.2]:
+ test_tone = get_test_tone(scale)
+ test_tone_max_abs = numpy.max(numpy.abs(test_tone))
+ expected_max_value = int(max_int16 * test_tone_max_abs)
+ audio = display.Audio(test_tone, rate=44100, normalize=False)
+ actual_max_value = numpy.max(numpy.abs(read_wav(audio.data)))
+ assert actual_max_value == expected_max_value
+
+ def test_audio_data_without_normalization_raises_for_invalid_data(self):
+ self.assertRaises(
+ ValueError,
+ lambda: display.Audio([1.001], rate=44100, normalize=False))
+ self.assertRaises(
+ ValueError,
+ lambda: display.Audio([-1.001], rate=44100, normalize=False))
+
+def simulate_numpy_not_installed():
+ try:
+ import numpy
+ return mock.patch('numpy.array', mock.MagicMock(side_effect=ImportError))
+ except ModuleNotFoundError:
+ return lambda x:x
+
+@simulate_numpy_not_installed()
+class TestAudioDataWithoutNumpy(TestAudioDataWithNumpy):
+ # All tests from `TestAudioDataWithNumpy` are inherited.
+
+ @skipif_not_numpy
+ def test_audio_raises_for_nested_list(self):
+ stereo_signal = [list(get_test_tone())] * 2
+ self.assertRaises(TypeError, lambda: display.Audio(stereo_signal, rate=44100))
+
+
+@skipif_not_numpy
+def get_test_tone(scale=1):
+ return numpy.sin(2 * numpy.pi * 440 * numpy.linspace(0, 1, 44100)) * scale
+
+def read_wav(data):
+ with wave.open(BytesIO(data)) as wave_file:
+ wave_data = wave_file.readframes(wave_file.getnframes())
+ num_samples = wave_file.getnframes() * wave_file.getnchannels()
+ return struct.unpack('<%sh' % num_samples, wave_data)
+
+def test_code_from_file():
+ c = display.Code(filename=__file__)
+ assert c._repr_html_().startswith('