# Copyright (c) Meta Platforms, Inc. and affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. import os import numpy as np import faiss import getpass from .vecs_io import fvecs_read, ivecs_read, bvecs_mmap, fvecs_mmap, bvecs_iter, bvecs_iter_chunked from .exhaustive_search import knn class Dataset: """ Generic abstract class for a test dataset """ def __init__(self): """ the constructor should set the following fields: """ self.d = -1 self.metric = 'L2' # or IP self.nq = -1 self.nb = -1 self.nt = -1 def get_queries(self): """ return the queries as a (nq, d) array """ raise NotImplementedError() def get_train(self, maxtrain=None): """ return the queries as a (nt, d) array """ raise NotImplementedError() def get_database(self): """ return the queries as a (nb, d) array """ raise NotImplementedError() def database_iterator(self, bs=128, split=(1, 0)): """returns an iterator on database vectors. bs is the number of vectors per batch split = (nsplit, rank) means the dataset is split in nsplit shards and we want shard number rank The default implementation just iterates over the full matrix returned by get_dataset. """ xb = self.get_database() nsplit, rank = split i0, i1 = self.nb * rank // nsplit, self.nb * (rank + 1) // nsplit for j0 in range(i0, i1, bs): yield xb[j0: min(j0 + bs, i1)] def get_groundtruth(self, k=None): """ return the ground truth for k-nearest neighbor search """ raise NotImplementedError() def get_groundtruth_range(self, thresh=None): """ return the ground truth for range search """ raise NotImplementedError() def __str__(self): return (f"dataset in dimension {self.d}, with metric {self.metric}, " f"size: Q {self.nq} B {self.nb} T {self.nt}") def check_sizes(self): """ runs the previous and checks the sizes of the matrices """ assert self.get_queries().shape == (self.nq, self.d) if self.nt > 0: xt = self.get_train(maxtrain=123) assert xt.shape == (123, self.d), "shape=%s" % (xt.shape, ) assert self.get_database().shape == (self.nb, self.d) assert self.get_groundtruth(k=13).shape == (self.nq, 13) class SyntheticDataset(Dataset): """A dataset that is not completely random but still challenging to index """ def __init__(self, d, nt, nb, nq, metric='L2', seed=1338): Dataset.__init__(self) self.d, self.nt, self.nb, self.nq = d, nt, nb, nq d1 = 10 # intrinsic dimension (more or less) n = nb + nt + nq rs = np.random.RandomState(seed) x = rs.normal(size=(n, d1)) x = np.dot(x, rs.rand(d1, d)) # now we have a d1-dim ellipsoid in d-dimensional space # higher factor (>4) -> higher frequency -> less linear x = x * (rs.rand(d) * 4 + 0.1) x = np.sin(x) x = x.astype('float32') self.metric = metric self.xt = x[:nt] self.xb = x[nt:nt + nb] self.xq = x[nt + nb:] def get_queries(self): return self.xq def get_train(self, maxtrain=None): maxtrain = maxtrain if maxtrain is not None else self.nt return self.xt[:maxtrain] def get_database(self): return self.xb def get_groundtruth(self, k=100): return knn( self.xq, self.xb, k, faiss.METRIC_L2 if self.metric == 'L2' else faiss.METRIC_INNER_PRODUCT )[1] ############################################################################ # The following datasets are a few standard open-source datasets # they should be stored in a directory, and we start by guessing where # that directory is ############################################################################ username = getpass.getuser() for dataset_basedir in ( '/datasets01/simsearch/041218/', '/mnt/vol/gfsai-flash3-east/ai-group/datasets/simsearch/', f'/home/{username}/simsearch/data/'): if os.path.exists(dataset_basedir): break else: # users can link their data directory to `./data` dataset_basedir = 'data/' def set_dataset_basedir(path): global dataset_basedir dataset_basedir = path class DatasetSIFT1M(Dataset): """ The original dataset is available at: http://corpus-texmex.irisa.fr/ (ANN_SIFT1M) """ def __init__(self): Dataset.__init__(self) self.d, self.nt, self.nb, self.nq = 128, 100000, 1000000, 10000 self.basedir = dataset_basedir + 'sift1M/' def get_queries(self): return fvecs_read(self.basedir + "sift_query.fvecs") def get_train(self, maxtrain=None): maxtrain = maxtrain if maxtrain is not None else self.nt return fvecs_read(self.basedir + "sift_learn.fvecs")[:maxtrain] def get_database(self): return fvecs_read(self.basedir + "sift_base.fvecs") def get_groundtruth(self, k=None): gt = ivecs_read(self.basedir + "sift_groundtruth.ivecs") if k is not None: assert k <= 100 gt = gt[:, :k] return gt def sanitize(x): return np.ascontiguousarray(x, dtype='float32') class DatasetBigANN(Dataset): """ The original dataset is available at: http://corpus-texmex.irisa.fr/ (ANN_SIFT1B) """ def __init__(self, nb_M=1000): Dataset.__init__(self) assert nb_M in (1, 2, 5, 10, 20, 50, 100, 200, 500, 1000) self.nb_M = nb_M nb = nb_M * 10**6 self.d, self.nt, self.nb, self.nq = 128, 10**8, nb, 10000 self.basedir = dataset_basedir + 'bigann/' def get_queries(self): return sanitize(bvecs_mmap(self.basedir + 'bigann_query.bvecs')[:]) def get_train(self, maxtrain=None): maxtrain = maxtrain if maxtrain is not None else self.nt return sanitize(bvecs_mmap(self.basedir + 'bigann_learn.bvecs')[:maxtrain]) def get_groundtruth(self, k=None): gt = ivecs_read(self.basedir + 'gnd/idx_%dM.ivecs' % self.nb_M) if k is not None: assert k <= 100 gt = gt[:, :k] return gt def get_database(self): assert self.nb_M < 100, "dataset too large, use iterator" return sanitize(bvecs_mmap(self.basedir + 'bigann_base.bvecs')[:self.nb]) def database_iterator(self, bs=128, split=(1, 0)): xb = bvecs_mmap(self.basedir + 'bigann_base.bvecs') nsplit, rank = split i0, i1 = self.nb * rank // nsplit, self.nb * (rank + 1) // nsplit for j0 in range(i0, i1, bs): yield sanitize(xb[j0: min(j0 + bs, i1)]) class DatasetDeep1B(Dataset): """ See https://github.com/facebookresearch/faiss/tree/main/benchs#getting-deep1b on how to get the data """ def __init__(self, nb=10**9): Dataset.__init__(self) nb_to_name = { 10**5: '100k', 10**6: '1M', 10**7: '10M', 10**8: '100M', 10**9: '1B' } assert nb in nb_to_name self.d, self.nt, self.nb, self.nq = 96, 358480000, nb, 10000 self.basedir = dataset_basedir + 'deep1b/' self.gt_fname = "%sdeep%s_groundtruth.ivecs" % ( self.basedir, nb_to_name[self.nb]) def get_queries(self): return sanitize(fvecs_read(self.basedir + "deep1B_queries.fvecs")) def get_train(self, maxtrain=None): maxtrain = maxtrain if maxtrain is not None else self.nt return sanitize(fvecs_mmap(self.basedir + "learn.fvecs")[:maxtrain]) def get_groundtruth(self, k=None): gt = ivecs_read(self.gt_fname) if k is not None: assert k <= 100 gt = gt[:, :k] return gt def get_database(self): assert self.nb <= 10**8, "dataset too large, use iterator" return sanitize(fvecs_mmap(self.basedir + "base.fvecs")[:self.nb]) def database_iterator(self, bs=128, split=(1, 0)): xb = fvecs_mmap(self.basedir + "base.fvecs") nsplit, rank = split i0, i1 = self.nb * rank // nsplit, self.nb * (rank + 1) // nsplit for j0 in range(i0, i1, bs): yield sanitize(xb[j0: min(j0 + bs, i1)]) class DatasetGlove(Dataset): """ Data from http://ann-benchmarks.com/glove-100-angular.hdf5 """ def __init__(self, loc=None, download=False): import h5py assert not download, "not implemented" if not loc: loc = dataset_basedir + 'glove/glove-100-angular.hdf5' self.glove_h5py = h5py.File(loc, 'r') # IP and L2 are equivalent in this case, but it is traditionally seen as an IP dataset self.metric = 'IP' self.d, self.nt = 100, 0 self.nb = self.glove_h5py['train'].shape[0] self.nq = self.glove_h5py['test'].shape[0] def get_queries(self): xq = np.array(self.glove_h5py['test']) faiss.normalize_L2(xq) return xq def get_database(self): xb = np.array(self.glove_h5py['train']) faiss.normalize_L2(xb) return xb def get_groundtruth(self, k=None): gt = self.glove_h5py['neighbors'] if k is not None: assert k <= 100 gt = gt[:, :k] return gt class DatasetMusic100(Dataset): """ get dataset from https://github.com/stanis-morozov/ip-nsw#dataset """ def __init__(self): Dataset.__init__(self) self.d, self.nt, self.nb, self.nq = 100, 0, 10**6, 10000 self.metric = 'IP' self.basedir = dataset_basedir + 'music-100/' def get_queries(self): xq = np.fromfile(self.basedir + 'query_music100.bin', dtype='float32') xq = xq.reshape(-1, 100) return xq def get_database(self): xb = np.fromfile(self.basedir + 'database_music100.bin', dtype='float32') xb = xb.reshape(-1, 100) return xb def get_groundtruth(self, k=None): gt = np.load(self.basedir + 'gt.npy') if k is not None: assert k <= 100 gt = gt[:, :k] return gt class DatasetGIST1M(Dataset): """ The original dataset is available at: http://corpus-texmex.irisa.fr/ (ANN_GIST1M) """ def __init__(self): Dataset.__init__(self) self.d, self.nt, self.nb, self.nq = 960, 100000, 1000000, 10000 self.basedir = dataset_basedir + 'gist1M/' def get_queries(self): return fvecs_read(self.basedir + "gist_query.fvecs") def get_train(self, maxtrain=None): maxtrain = maxtrain if maxtrain is not None else self.nt return fvecs_read(self.basedir + "gist_learn.fvecs")[:maxtrain] def get_database(self): return fvecs_read(self.basedir + "gist_base.fvecs") def get_groundtruth(self, k=None): gt = ivecs_read(self.basedir + "gist_groundtruth.ivecs") if k is not None: assert k <= 100 gt = gt[:, :k] return gt class DatasetDINO10B(Dataset): """ Data from https://dl.fbaipublicfiles.com/large_objects/dino_vitl_10B/ The dataset contains 10 billion 1024-d vectors extracted from image patches from the YFCC100M dataset, using a Dino-ViT-L 16 model (facebook/dinov3-vitl16-pretrain-lvd1689m). The dataset is sharded in multiple chunked .bvecs files. Downloading instructions can be obtained with "wget https://dl.fbaipublicfiles.com/large_objects/dino_vitl_10B/README.md". Supported sizes : 100k 200k 500k 1M ... 5B 10B listed in supported_nbs (see __init__). """ def __init__(self, nb, ignore_supported = False): Dataset.__init__(self) supported_nbs = [100_000, 200_000, 500_000, 1_000_000, 2_000_000, 5_000_000, 10_000_000, 20_000_000, 50_000_000, 100_000_000, 200_000_000, 500_000_000, 1_000_000_000, 2_000_000_000, 5_000_000_000, 10_000_000_000] if nb not in supported_nbs and not ignore_supported: raise ValueError(f"Unsupported dataset size: {nb}, supported values are: {supported_nbs}") if not os.path.exists(dataset_basedir): raise ValueError(f"Provided dataset base directory does not exist: {dataset_basedir}") self.basedir = dataset_basedir + "dino_vitl_10B/" self.indexdir = self.basedir + "chunked_base_10B" assert os.path.exists(self.indexdir), f"Index path should exist, check your dataset path: {self.indexdir}" self.queriesdir = self.basedir + "queries_clean.bvecs" assert os.path.exists(self.queriesdir), f"Queries path should exist as dataset size {nb} is supported: {self.queriesdir}" self.gtsdir = self.basedir + "gts/" + "gts_dino_patch_" + str(nb) + "_" + "k10.npy" self.train_queriesdir = self.basedir + "train_queries_99M.bvecs" self.nb = nb self.d = 1024 self.nq = 100_000 self.nt = 99_000_000 self.metric = "L2" def get_queries(self): """Get all vectors as a single array""" queries = bvecs_mmap(self.queriesdir) return sanitize(queries) def get_train(self, maxtrain = None): """Get training query vectors as a single array""" if maxtrain is None or maxtrain > 10_000_000: raise NotImplementedError("The training set is potentially too large to fit in RAM (400 GB of data). Please use train_iterator or use maxtrain parameter below 10_000_000 to get the first maxtrain training vectors.") return sanitize(bvecs_mmap(self.train_queriesdir)[:maxtrain]) def get_database(self): """Get all database vectors as a single array""" if self.nb > 10_000_000: raise NotImplementedError("The dataset is potentially too large to fit in RAM. Please use database_iterator or use a dataset size equal to or below 10_000_000.") else: return sanitize(bvecs_iter_chunked(self.indexdir, batch_size=self.nb).__next__()) def database_iterator(self, bs=10_000): """Iterator over the database of size nb, corresponding to the first nb vectors in the .bvecs file""" total_read = 0 for batch in bvecs_iter_chunked(self.indexdir, batch_size=bs): if total_read + batch.shape[0] > self.nb: batch = batch[:self.nb - total_read] yield sanitize(batch) total_read += batch.shape[0] if total_read >= self.nb: break def train_iterator(self, bs=10_000): """Iterator over all training query vectors in the .bvecs file""" for batch in bvecs_iter(self.train_queriesdir, batch_size=bs): yield sanitize(batch) def get_groundtruth(self, k = 10): """Get ground truth from .npy file""" if k > 10: raise NotImplementedError("Ground truth files only available for k<=10") gts = np.load(self.gtsdir) gts = gts[:, :k] return gts def distance(self): return "euclidean" def dataset_from_name(dataset='deep1M', download=False): """ converts a string describing a dataset to a Dataset object Supports sift1M, bigann1M..bigann1B, deep1M..deep1B, music-100 and glove """ if dataset == 'sift1M': return DatasetSIFT1M() elif dataset == 'gist1M': return DatasetGIST1M() elif dataset.startswith('bigann'): dbsize = 1000 if dataset == "bigann1B" else int(dataset[6:-1]) return DatasetBigANN(nb_M=dbsize) elif dataset.startswith("deep"): szsuf = dataset[4:] if szsuf[-1] == 'M': dbsize = 10 ** 6 * int(szsuf[:-1]) elif szsuf == '1B': dbsize = 10 ** 9 elif szsuf[-1] == 'k': dbsize = 1000 * int(szsuf[:-1]) else: assert False, "did not recognize suffix " + szsuf return DatasetDeep1B(nb=dbsize) elif dataset == "music-100": return DatasetMusic100() elif dataset == "glove": return DatasetGlove(download=download) elif dataset.startswith("dino"): dbsize = 10_000_000_000 if dataset == "dino10B" else int(dataset[4:]) return DatasetDINO10B(nb=dbsize) else: raise RuntimeError("unknown dataset " + dataset)