#!/usr/bin/env bash set -euo pipefail : "${RUN_NAME:?RUN_NAME is required}" : "${OUTPUT_DIR:?OUTPUT_DIR is required}" EXPECTED_OUTPUT_DIR="/nfs/ywang29/GmNet/runs/e4_alignment/${RUN_NAME}" if [[ "${RUN_NAME}" != e4a_* ]]; then echo "E4 alignment run name must use the e4a_ namespace: ${RUN_NAME}" >&2 exit 2 fi if [[ "${OUTPUT_DIR}" != "${EXPECTED_OUTPUT_DIR}" ]]; then echo "E4 alignment output mismatch: expected ${EXPECTED_OUTPUT_DIR}, got ${OUTPUT_DIR}" >&2 exit 2 fi if ! command -v flock >/dev/null 2>&1; then echo "flock is required to prevent concurrent writers" >&2 exit 1 fi mkdir -p "${OUTPUT_DIR}" LOCK_PATH="${OUTPUT_DIR}/.e4_alignment.lock" exec 9>"${LOCK_PATH}" if ! flock -n 9; then echo "Another process is already writing ${OUTPUT_DIR}" >&2 exit 73 fi bash scripts/init_run.sh "$@"