""" Model for making Neural Network models for classification of source code. The module provides factory class for making Neural Network models """ import sys import tensorflow from tensorflow.keras import models from tensorflow.keras import layers from tensorflow.keras import initializers class UniqueSeed(): """ Class for generating unique seed for model initializing DNN models """ #Initial value of seed seed = 1234 #Step at which seed is incrtemented after its each query step = 17 @classmethod def getSeed(cls): """ Get unique seed """ cls.seed += cls.step return cls.seed @classmethod def setSeed(cls, seed, step = 17): """ Initialize seed externally Parameters: - seed -- Initial value of seed - step -- Step at which seed is incretemented after its each query """ cls.seed = seed cls.step = step def __init__(self): pass class BaseModelFactory(): """ Base class for factories of DNN models Supplies utility methods of other DNN factories """ @classmethod def computeInitializer(cls, seed = None): """ Compute layer initializer Parameters: - seed -- seed for random generator used by analyzer If it is None a unique repeatable seed is generated """ _seed = seed if seed else UniqueSeed.getSeed() #_initializer=initializers.GlorotNormal(seed=seed) _initializer=initializers.GlorotUniform(seed=seed) return _initializer @classmethod def computeRegularizer(cls, regular): """ Compute l1 and l2 regulizer Parameters: - regular -- regularizer as a pair (l1, l2) or None if no regularization is applied. """ return None if regular is None \ else tensorflow.keras.regularizers.l1_l2(l1=regular[0], l2=regular[1]) @classmethod def compClassification(cls, labels): """ Compute classification function Parameters: - labels -- number of labels (classes) """ return "sigmoid" if labels == 1 \ else "softmax" @classmethod def compLoss(cls, labels): """ Compute loss function Parameters: - labels -- number of labels (classes) """ return "binary_crossentropy" if labels == 1 \ else "sparse_categorical_crossentropy" @classmethod def compileDNN(cls, dnn, loss, optimizer = "rmsprop"): """ Compile sequential DNN Parameters: - dnn -- DNN to compile - loss -- loss to use for training - optimizer -- training optimizer Returns compiled DNN """ dnn.compile(optimizer = optimizer, loss = loss, metrics = ['accuracy']) print("Summary of DNN constructed") dnn.summary() return dnn def __init__(self): pass #---------------- End of class BaseModelFactory --------------------------- class SeqBlockFactory(BaseModelFactory): """ Factory of sequential DNN blocks for processing sequences of tokens for code classification and similarity analysis Provides functions for creating sequential DNN building blocks """ def __init__(self, tokens): """ Initialize factory of DNN sequential building blocks Parameters: - tokens -- number of types of tokens It is the size (dimensionality) of sequence vectors or number of values for cathegorical input coding """ super(SeqBlockFactory, self).__init__() self.n_tokens = tokens def addConv1Layer(self, dnn, convolution, activation = None, bias = True, regularizer = None): """ Add to the dnn a convolutional layer Parameters: - dnn -- dnn to buld - convolution -- specification of the convolutional layer as list of tuples: either (n filters, kernel width, stride) or (n filters, kernel width) if stride = 1 - activation -- activation on convolutional layer - bias -- use or do not use bias on convolutional layer - regularizer -- regularizer of convolution kernels Returns exit code: - 0 if the layer is successfully added - 1 if the layer is specified incorrectly """ if len(convolution) == 3: dnn.add(layers.Conv1D(convolution[0], convolution[1], strides=convolution[2], activation = activation, use_bias = bias, kernel_regularizer = regularizer, kernel_initializer = BaseModelFactory.computeInitializer())) return 0 elif len(convolution) == 2: dnn.add(layers.Conv1D(convolution[0], convolution[1], activation = activation, use_bias = bias, kernel_regularizer = regularizer, kernel_initializer = BaseModelFactory.computeInitializer())) return 0 else: return 1 def addConv1(self, dnn, convolutions, activation = None, bias = True, out_no_act = True, regularizer = None): """ Add to the dnn a stack of convolutional layers Parameters: - dnn -- dnn to buld - convolutions -- specification of convolutional layers as list of tuples: either (n filters, kernel width, stride) or (n filters, kernel width) if stride = 1 - activation -- activation on all convolutional layers but the last one - bias -- use or do not use bias on convolutional layers - out_no_act -- flag of no activation on last layer - regularizer -- regularizer of convolution kernels """ for _i in range(len(convolutions)): _act = None if _i == len(convolutions) - 1 and out_no_act \ else activation if self.addConv1Layer(dnn, convolutions[_i], activation = _act, bias = bias, regularizer = regularizer): print(f"Wrong specification of convolutional layer {-i}") _n_conv_parms = len(convolutions[_i]) print(f"It has incorrect number {_n_conv_parm} of parameters") sys.exit(0) def addDense(self, dnn, dense, bias = True, regularizer = None): """ Add a stack of dense layers to the dnn Parameters: - dnn -- dnn to buld - dense -- specification of dense layers as list of their width - bias -- use or do not use bias on dense layers - regularizer -- regularizer of dense weight matrix """ if not dense: return for _w in dense: dnn.add(layers.Dense(_w, activation = 'relu', use_bias = bias, kernel_regularizer=regularizer, kernel_initializer = BaseModelFactory.computeInitializer())) def addPooling(self, dnn, pool): """ Add pooling layer to the dnn Parameters: - dnn -- dnn to buld - pool -- pooling operation; either 'max' for maximum or 'aver' for average """ if pool == 'max': dnn.add(layers.GlobalMaxPooling1D()) elif pool == 'aver': dnn.add(layers.GlobalAveragePooling1D()) else: print(f"Error: Wrong pooling operation {pool}\n" + "It should be either max or aver") sys.exit(0) def addDropout(self, dnn, rate): """ Add droput layer to dnn Parameters: - dnn -- dnn to buld - rate -- dropout rate If it is 0 or None no droput layer is inserted """ if rate: dnn.add(layers.Dropout(rate, seed = UniqueSeed.getSeed())) def addEmbedding(self, dnn, trainable = False, width = None, regularizer = None): """ Add embedding layer to the DNN Parameters: - dnn -- dnn to buld - trainable -- flag defining that embedding should be trainable If it is False embedding layer transforms categorical coding into one hot coding - width -- dimension of embedding vectors It effects trainable embedding only. If it is None self.n_tokens is used. - regularizer -- regularizer of convolution and dense kernels effects on trainable embedding """ if trainable: _output_dim = width if width else self.n_tokens _initializer = \ tensorflow.keras.initializers.RandomUniform(seed = \ UniqueSeed.getSeed()) dnn.add(layers.Embedding( input_dim = self.n_tokens + 1, output_dim = _output_dim, embeddings_initializer = _initializer, mask_zero = True, embeddings_regularizer = regularizer)) else: #Transformation of categorical coding into one-hot _initializer = tensorflow.keras.initializers.Identity() dnn.add(layers.Embedding( input_dim = self.n_tokens + 1, output_dim = self.n_tokens, embeddings_initializer = _initializer, mask_zero = True)) def convTower(self, convolutions, conv_act = None, out_no_act = True, conv_bias = True, input_type = "one_hot", regularizer = None, embedding_dim = None, regul_dense_only = True): """ Make sequential DNN building block of stack of convolutional layers Parameters: - convolutions -- specification of convolutional layers as list of tuples: either (kernel width, n filters, stride) or (kernel width, n filters) if stride = 1 - conv_act -- activation of convolutional layers - out_no_act -- flag of no activation on last convolutional layer - conv_bias -- use bias for convolutional layers - input_type -- type of input layer: - one_hot - one hot coding of input samples - categorical - categorical coding decoded by preprocessing layer - trainable - categorical coding processed by trainable embedding layer - regularizer -- regularizer applied to weights of dense layer and to convolutionand embedding layers if parameters regul_dense_only = False - embedding_dim -- size of embedding vectors It effects trainable embedding only, i.e. input_type == "trainable" If it is None self.n_tokens is used. If it is None self.n_tokens is used - regul_dense_only -- flag to regulirize only dense layers Returns: - dnn -- constructed DNN building block """ _conv_regul = None if regul_dense_only else regularizer _embed_regul = None if regul_dense_only else regularizer _dnn = models.Sequential() if input_type == "one_hot": _dnn.add(layers.Input(shape=(None, self.n_tokens,))) elif input_type == "categorical" or input_type == "trainable": _trainable = (input_type == "trainable") _dnn.add(layers.Input(shape=(None,))) self.addEmbedding(_dnn, trainable = _trainable, width = embedding_dim, regularizer = _embed_regul) else: sys.exit(f"Wrong type {input_type} of input_type parameter of sequentinal convolution block") self.addConv1(_dnn, convolutions, activation = conv_act, bias = conv_bias, out_no_act = out_no_act, regularizer = _conv_regul) return _dnn def convBlock(self, convolutions, dense = [], pool = 'max', conv_act = None, conv_bias = True, dense_bias = True, input_type = "one_hot", regularizer = None, embedding_dim = None, dropout_rate = 0, regul_dense_only = True): """ Make sequential convolutional DNN building block Parameters: - convolutions -- specification of convolutional layers as list of tuples: either (kernel width, n filters, stride) or (kernel width, n filters) if stride = 1 - dense -- specification of dense layers as list of their width except the last one - pool -- pooling operation either: 'max' for maximum or 'aver' for average - conv_act -- activation of convolutional layers - conv_bias -- use bias for convolutional layers - dense_bias -- use bias for dense layers - input_type -- type of input layer: - one_hot - one hot coding of input samples - categorical - categorical coding decoded by preprocessing layer - trainable - categorical coding processed by trainable embedding layer - regularizer -- regularizer applied to weights of dense layer and to convolutionand embedding layers if parameters regul_dense_only = False - embedding_dim -- size of embedding vectors It effects trainable embedding only, i.e. input_type == "trainable" If it is None self.n_tokens is used. If it is None self.n_tokens is used - dropout_rate -- dropout rate for inserted dropout layer If it is 0 or None no droput layer is inserted - regul_dense_only -- flag to regulirize only dense layers Returns: - dnn -- constructed DNN building block """ _conv_regul = None if regul_dense_only else regularizer _embed_regul = None if regul_dense_only else regularizer _dnn = models.Sequential() if input_type == "one_hot": _dnn.add(layers.Input(shape=(None, self.n_tokens,))) elif input_type == "categorical" or input_type == "trainable": _trainable = (input_type == "trainable") _dnn.add(layers.Input(shape=(None,))) self.addEmbedding(_dnn, trainable = _trainable, width = embedding_dim, regularizer = _embed_regul) else: sys.exit(f"Wrong type {input_type} of input_type parameter of functional convolution block") self.addConv1(_dnn, convolutions, activation = conv_act, bias = conv_bias, out_no_act = (pool == 'max'), regularizer = _conv_regul) self.addPooling(_dnn, pool) self.addDense(_dnn, dense, bias = dense_bias, regularizer = regularizer) self.addDropout(_dnn, dropout_rate) return _dnn def addClassifier(self, dnn, labels, bias = True, regularizer = None): """ Add to the dnn a dense layer with classifier Classifier is either softmax for more than 2 classes or sigmoid for 2 classes It is expected that input shape is known Parameters: - dnn -- dnn to complete - labels -- number of labels (classes) - bias -- use or do not use bias on dense layers - regularizer -- regularizer applied to weights of convolution, dense, and embedding layers """ dnn.add(layers.Dense(labels, activation = self.compClassification(labels), use_bias = bias, kernel_regularizer=regularizer, kernel_initializer = BaseModelFactory.computeInitializer())) #---------------- End of class SeqBlockFactory ----------------------