""" Module with base class for analysis of confusion information """ import os from abc import ABC, abstractmethod import numpy as np import sklearn.metrics as metrics class ConfusionAnalysis(ABC): """ Base class for analysis of confusion information It performs intialization common for child classes and provides utility functions for them """ @classmethod def writeLargeMatrixInt(cls, m, f): """ Write large matrix to file Parameters: - m -- matrix to write as numpy array of floats - f -- file to write the matrix """ _n = m.shape[0] _s = " " for _i in range(_n): _s += "{:5d} ".format(_i) f.write(_s + "\n") for _i in range(_n): _s = "{:3d} ".format(_i) for _j in range(_n): _s += "{:5d} ".format(m[_i, _j]) f.write(_s + "\n") @classmethod def writeLargeMatrixPct(cls, m, f, scale): """ Write large matrix to file Parameters: - m -- matrix to write as numpy array of floats - f -- file to write the matrix - scale -- multiplier to scale elements of matrix """ _n = m.shape[0] _s = " " for _i in range(_n): _s += "{:4d} ".format(_i) f.write(_s + "\n") for _i in range(_n): _s = "{:3d} ".format(_i) for _j in range(_n): _s += "{:4.1f} ".format(scale * m[_i, _j]) f.write(_s + "\n") def __init__(self, probabilities, labels, solutions, problems, extreme): """ Initialize base class for analysis and reporting confusion information Parameters: - probabilities - classification probabilities as numpy array - labels - labels of samples as numpy array - solutions - list of sub-lists of file names of problem solutions Each sub-list contains sample names of one problem All sublists are part of the whole list of sample names - problems - list of names of problems - extreme - specification of number of cases to be reported as extreme ones; * if extreme < 1.0 it is a fraction of number of problems * if extreme >= 1 it is the number of problems """ super(ConfusionAnalysis, self).__init__() self.probabilities = probabilities self.labels = labels self._n_samples = self.labels.shape[0] self.problems = problems self._n_problems = len(self.problems) self.extreme = extreme #Number of problems to reports as the best or worst self._n_extreme_cases = int(extreme) if extreme >= 1 else \ max(2, int(extreme * float(self._n_problems))) self.solutions = solutions #Directory for writing confusion reports to self.report_dir = "confusion_report" if not os.path.exists(self.report_dir): os.makedirs(self.report_dir) #Name of file to write large confusion matrices self._conf_mat_fn = "confusion_matrix.lst" self.predictions = self.getPredictions() self.conf_mat = metrics.confusion_matrix( self.labels, self.predictions) @abstractmethod def getPredictions(self): """ Abstract method for getting classification predictions Returns: classification predictions """ raise NotImplementedError() #---------------- End of class ConfusionAnalysis ----------------------