import sys, os, json, math, tempfile sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.abspath(__file__)))) import numpy as np import eegx from eegx.format import Writer, Recording, make_channel, make_event, EEGXError, validate_header rng = np.random.default_rng(0) FAILS = [] def check(name, cond, extra=""): print(("PASS " if cond else "FAIL ") + name + (f" {extra}" if extra and not cond else "")) if not cond: FAILS.append(name) def hdr(nch, n, dtype="int16", sfreq=256.0, codec="zstd", scale=0.1): return dict(eegx_version=1, id=f"t/{nch}x{n}", dataset="t", subject="s1", session=None, run=None, part=None, sfreq=sfreq, n_channels=nch, n_samples=n, dtype=dtype, layout="channel_major", codec={"name": codec}, channels=[make_channel(f"C{i}", "eeg", "uV", scale, 0.0) for i in range(nch)], events=[make_event(1.5, 0.5, "x")], meta={}, provenance={"lossless": True}) d = tempfile.mkdtemp() # --- 1. exact int roundtrip, zstd+delta, streamed in odd-sized blocks nch, n = 23, 100_000 data = (np.cumsum(rng.integers(-40, 40, size=(nch, n)), axis=1) % 30000 - 15000).astype(np.int16) p = f"{d}/a.eegx" with Writer(p, hdr(nch, n)) as w: i = 0 for b in [1, 7, 4095, 60000, 1, 999]: if i >= n: break w.append(data[:, i:i+b]); i += b w.append(data[:, i:]) r = Recording(p) check("roundtrip exact (zstd+delta)", np.array_equal(r.read(physical=False), data)) check("n_samples correct", r.n_samples == n, f"{r.n_samples}") check("physical scaling", np.allclose(r.read(0, 100), data[:, :100].astype(np.float32)*0.1, atol=1e-4)) check("duration", abs(r.duration - n/256.0) < 1e-9) # --- 2. random access equals full read on every chunk boundary cs = r.header["codec"]["chunk_samples"] oks = True for s in [0, 1, cs-1, cs, cs+1, 2*cs-5, n-10, n-1]: e = min(n, s+3000) oks &= np.array_equal(r.read(s, e, physical=False), data[:, s:e]) check("random access on chunk boundaries", oks) check("slice sugar", np.allclose(r[:, 10:20], data[:, 10:20]*0.1, atol=1e-4)) check("picks(eeg)", list(r.picks("eeg")) == list(range(nch))) check("read past end clamps", r.read(n-5, n+500, physical=False).shape == (nch, 5)) check("empty range", r.read(50, 50).shape == (nch, 0)) r.close() # --- 2b. the writer must not alias a caller's reused scratch buffer pbuf = f"{d}/reuse.eegx" scratch = np.empty((nch, 4096), dtype=np.int16) with Writer(pbuf, hdr(nch, 40960)) as w: for k in range(10): scratch[:] = data[:, k*4096:(k+1)*4096] # same array every iteration w.append(scratch) with Recording(pbuf) as rb: check("writer copies reused caller buffer", np.array_equal(rb.read(physical=False), data[:, :40960])) # --- 3. uncompressed is mmap-able and identical p2 = f"{d}/b.eegx" h = hdr(nch, n, codec="none") eegx.write(p2, data, h) r2 = Recording(p2) check("codec=none roundtrip", np.array_equal(r2.read(physical=False), data)) check("codec=none random access", np.array_equal(r2.read(70000, 70123, physical=False), data[:, 70000:70123])) check("codec=none exact file size", os.path.getsize(p2) == r2._data_off + nch*n*2) r2.close() # --- 4. compression actually helps on realistic (smooth) EEG t = np.arange(n) / 256.0 sig = np.zeros((nch, n)) for i in range(nch): for f_, a_ in ((10, 30), (5, 15), (2.5, 20), (25, 5)): sig[i] += a_*np.sin(2*np.pi*f_*t + rng.random()*6.28) sig[i] += rng.normal(0, 3, n) q = np.clip(np.rint(sig/0.1), -32768, 32767).astype(np.int16) sizes = {} for name, kw in (("zstd+delta", {}), ("zstd", {"filters": ()}), ("none", None)): pp = f"{d}/c_{name}.eegx" if kw is None: eegx.write(pp, q, hdr(nch, n, codec="none")) else: eegx.write(pp, q, hdr(nch, n), **kw) sizes[name] = os.path.getsize(pp) raw = nch*n*2 print(" sizes:", {k: f"{v/raw:.3f}x" for k, v in sizes.items()}) check("delta filter beats plain zstd", sizes["zstd+delta"] < sizes["zstd"]) check("zstd beats raw", sizes["zstd+delta"] < sizes["none"]*0.8) # --- 5. dtypes for dt, arr in (("int32", rng.integers(-2**30, 2**30, (4, 5000)).astype(np.int32)), ("float32", rng.normal(0, 50, (4, 5000)).astype(np.float32))): # float32 payloads must silently drop the integer-only delta filter pp = f"{d}/d_{dt}.eegx" hh = hdr(4, 5000, dtype=dt, scale=1.0) eegx.write(pp, arr, hh) with Recording(pp) as rr: check(f"{dt} roundtrip", np.array_equal(rr.read(physical=False), arr)) # --- 6. header-rewrite path (reserved header too small) pp = f"{d}/e2.eegx" big = rng.integers(-100, 100, (2, 300_000)).astype(np.int16) wr = Writer(pp, hdr(2, 300_000), chunk_samples=1024) # 293 chunks -> big index wr.append(big); wr.close() with Recording(pp) as rr: check("many-chunk file roundtrip", np.array_equal(rr.read(physical=False), big)) check("chunk_offsets length", len(rr.header["codec"]["chunk_offsets"]) == math.ceil(300_000/1024)+1) # --- 7. zero-length and single-sample for n_ in (0, 1): pp = f"{d}/z{n_}.eegx" a = np.zeros((3, n_), dtype=np.int16) eegx.write(pp, a, hdr(3, n_)) with Recording(pp) as rr: check(f"n_samples={n_} roundtrip", rr.read(physical=False).shape == (3, n_)) # --- 8. validation rejects malformed headers def rejects(name, mut): h = hdr(2, 10); mut(h) try: validate_header(h); check("reject "+name, False) except EEGXError: check("reject "+name, True) rejects("bad dtype", lambda h: h.__setitem__("dtype", "float64")) rejects("bad version", lambda h: h.__setitem__("eegx_version", 2)) rejects("nch mismatch", lambda h: h.__setitem__("n_channels", 3)) rejects("dup channel names", lambda h: h["channels"].__setitem__(1, dict(h["channels"][0]))) rejects("type outside vocab", lambda h: h["channels"][0].__setitem__("type", "brainwaves")) rejects("negative sfreq", lambda h: h.__setitem__("sfreq", -1)) rejects("nan onset", lambda h: h.__setitem__("events", [{"onset": float("nan"), "value": "x"}])) rejects("missing key", lambda h: h.pop("meta")) rejects("bad layout", lambda h: h.__setitem__("layout", "time_major")) # --- 9. not-an-eegx-file pp = f"{d}/bad.bin"; __import__("pathlib").Path(pp).write_bytes(b"NOTEEGX" + b"\0"*100) try: Recording(pp); check("reject bad magic", False) except EEGXError: check("reject bad magic", True) # --- 10. corpus catalog + window index import shutil root = f"{d}/corpus"; os.makedirs(root+"/t", exist_ok=True) for k in range(3): hh = hdr(8, 30000); hh["id"] = f"t/r{k}"; hh["subject"] = f"s{k}" eegx.write(f"{root}/t/r{k}.eegx", data[:8, :30000], hh) rows = eegx.build_catalog(root) check("catalog rows", len(rows) == 3) st = eegx.corpus_stats(rows) check("stats hours", abs(st["total_hours"] - 3*30000/256/3600) < 1e-3, str(st["total_hours"])) wi = eegx.WindowIndex(root, window_s=10.0, hop_s=10.0) exp = 3 * ((30000 - 2560)//2560 + 1) check("window count", len(wi) == exp, f"{len(wi)} vs {exp}") x, m = wi[5] check("window shape", x.shape == (8, 2560), str(x.shape)) m_ = int(round(m['t0']*256)) check("window content", np.allclose(x, data[:8, m_:m_+2560]*0.1, atol=1e-4)) wi.close() # --- 11. to_mne with Recording(f"{root}/t/r0.eegx") as rr: raw = rr.to_mne() check("to_mne shape", raw.get_data().shape == (8, 30000)) check("to_mne volts", np.allclose(raw.get_data()[:, :50], data[:8, :50]*0.1*1e-6, atol=1e-12)) check("to_mne annots", len(raw.annotations) == 1) # --- 12. picks by channel type and name # Regression: picks went straight to np.asarray(dtype=int64), so every # documented example selecting by channel type (`read(picks=['eeg'])`) raised # ValueError -- including the ones printed on the published dataset cards. pk = f"{d}/picks.eegx" _h = hdr(3, 50, sfreq=100.0) _h["channels"] = [make_channel("Cz", "eeg", "uV", 0.1, 0.0), make_channel("EOGl", "eog", "uV", 0.1, 0.0), make_channel("C3", "eeg", "uV", 0.1, 0.0)] with Writer(pk, _h) as _w: _w.append(np.arange(150, dtype=np.int16).reshape(3, 50)) with Recording(pk) as rp: check("picks by type", rp.read(picks=["eeg"]).shape == (2, 50)) check("picks single type", rp.read(picks=["eog"]).shape == (1, 50)) check("picks two types", rp.read(picks=["eeg", "eog"]).shape == (3, 50)) check("picks by name", rp.read(picks=["Cz"]).shape == (1, 50)) check("picks name case-insensitive", rp.read(picks=["cz"]).shape == (1, 50)) check("picks by index", rp.read(picks=[0, 2]).shape == (2, 50)) check("picks mixed type+index", rp.read(picks=["eeg", 1]).shape == (3, 50)) check("picks absent type is empty", rp.read(picks=["ecg"]).shape == (0, 50)) check("picks dedupe", rp.read(picks=["eeg", "Cz"]).shape == (2, 50)) check("picks preserve requested order", np.array_equal(rp.read(picks=["C3", "Cz"], physical=False), rp.read(picks=[2, 0], physical=False))) try: rp.read(picks=["nonsense"]); check("bad pick raises", False) except EEGXError: check("bad pick raises", True) try: rp.read(picks=[99]); check("out-of-range index raises", False) except EEGXError: check("out-of-range index raises", True) # --- atomic publication: a .eegx only appears once it is complete, so a # concurrent uploader can never pick up a half-written file. ap = f"{d}/atomic.eegx" w = Writer(ap, hdr(4, 0)) w.append(np.zeros((4, 1000), dtype=np.int16)) check("no .eegx while writing", not os.path.exists(ap)) check(".part exists while writing", os.path.exists(ap + ".part")) w.close() check(".eegx exists after close", os.path.exists(ap)) check("no .part left after close", not os.path.exists(ap + ".part")) # A conversion that raises leaves nothing behind at all. fp = f"{d}/failed.eegx" try: with Writer(fp, hdr(4, 0)) as w: w.append(np.zeros((4, 1000), dtype=np.int16)) raise RuntimeError("simulated conversion failure") except RuntimeError: pass check("failed write leaves no .eegx", not os.path.exists(fp)) check("failed write leaves no .part", not os.path.exists(fp + ".part")) shutil.rmtree(d) print("\n" + ("ALL PASS" if not FAILS else f"{len(FAILS)} FAILURES: {FAILS}")) sys.exit(1 if FAILS else 0)