#!/usr/bin/env python3 """Compare every emitted citation pair with an independent SQL source projection.""" import argparse import json from pathlib import Path import duckdb def main(): parser = argparse.ArgumentParser(description=__doc__) parser.add_argument("dataset_dir", type=Path) parser.add_argument("--source-dir", type=Path, required=True, help="Directory containing the pinned data/all parquet shards") parser.add_argument("--temp-dir", type=Path, help="Directory where DuckDB spills to disk") args = parser.parse_args() config = {"threads": 4} if args.temp_dir: config["temp_directory"] = str(args.temp_dir) c = duckdb.connect(config=config) c.read_parquet(str(args.source_dir / "*.parquet")).create_view("source") sql = (args.dataset_dir / "provenance/independent_projection.sql").read_text() c.execute("CREATE TEMP TABLE expected AS " + sql) c.read_json(str(args.dataset_dir / "data/*.jsonl.gz"), format="newline_delimited").create_view("records") unexpected_constants = c.execute("""SELECT count(*) FROM records WHERE enrichedValue.relatedIdentifierType IS DISTINCT FROM 'DOI' OR enrichedValue.relationType IS DISTINCT FROM 'IsCitedBy'""").fetchone()[0] c.execute("""CREATE TEMP TABLE actual AS SELECT doi, enrichedValue.relatedIdentifier AS related_identifier FROM records""") missing = c.execute("SELECT count(*) FROM (SELECT * FROM expected EXCEPT SELECT * FROM actual)").fetchone()[0] extra = c.execute("SELECT count(*) FROM (SELECT * FROM actual EXCEPT SELECT * FROM expected)").fetchone()[0] expected_count = c.execute("SELECT count(*) FROM expected").fetchone()[0] actual_count = c.execute("SELECT count(*) FROM actual").fetchone()[0] passed = missing == extra == unexpected_constants == 0 and expected_count == actual_count result = {"status": "passed" if passed else "failed", "independent_expected_citations": expected_count, "actual_citations": actual_count, "missing_citations": missing, "extra_citations": extra, "records_with_unexpected_constants": unexpected_constants} print(json.dumps(result, indent=2)) assert passed path = args.dataset_dir / "validation_report.json" report = json.loads(path.read_text()) report["independent_source_comparison"] = result path.write_text(json.dumps(report, indent=2) + "\n") if __name__ == "__main__": main()