import pandas as pd import numpy as np import os import torch from torch.utils.data import Dataset, DataLoader from sklearn.model_selection import KFold # from random import shuffle import pyarrow.feather as feather # pro_name = ['cesm', 'cnrm', 'csiro', 'fesom', 'ipsl', 'mpi', 'noresm', 'planktom', 'princeton', 'recom'] # pro_name = ['cesm', 'cnrm', 'csiro', 'fesom', 'ipsl', 'mpi', 'noresm', 'planktom', 'princeton', 'recom','xco2','ice','sst'] # pro_name = ['NorESM-OCv1.2','CESM2', 'Princeton', 'NEMO-PlankTOM12', 'MRI-ESM2-1', 'CESM-ETHZ','MPIOM-HAMOCC6', 'CNRM', 'IPSL', 'FESOM-2.1-REcoM2','sss', 'ssh','slp', 'wind', 'mld'] class OceanDataset_V2(Dataset): def __init__(self, data, indexes, config, mode): self.config = config self.lat_patch = config['patch'] self.lon_patch = config['patch'] self.window_size = config['window'] indexes = np.array(indexes) if mode == 'train': indexes = self.select_top_rows(data, indexes, config['percent']) data[..., :-1][np.isnan(data[..., :-1])] = 0 # data = np.nan_to_num(data[..., :-1], nan=0) self.data = torch.from_numpy(data.astype(np.float32)) self.indexes = torch.from_numpy(indexes) print(f'{mode} dataset shape: {self.data.shape}, indexes shape: {self.indexes.shape}') def select_top_rows(self, data, indexes, percent): if percent == 1: return indexes nan_rate = self.get_nan_rate(data, indexes) top_row_idx = np.argsort(nan_rate) top_row_idx = top_row_idx[:int(top_row_idx.shape[0] * percent)] indexes = indexes[top_row_idx] return indexes def get_nan_rate(self, data, indexes): labels = [self.get_label(data, d3_index) for d3_index in indexes] labels = np.stack(labels, axis = 0).reshape(len(labels), -1) nan_rate = np.isnan(labels).astype('float') nan_rate = nan_rate.sum(axis=-1) / labels.shape[-1] return nan_rate def get_label(self, data, d3_index): latitude_start, longitude_start, month_start = d3_index label = data[latitude_start:latitude_start + self.lat_patch, longitude_start:longitude_start + self.lon_patch, month_start + self.window_size - 1, -1] return label def __getitem__(self, index): latitude_start, longitude_start, month_start = self.indexes[index] data = self.data[latitude_start:latitude_start + self.lat_patch, longitude_start:longitude_start + self.lon_patch, month_start:month_start + self.window_size, ...].clone() if self.config['add_history_target']: data[:, :, -1, -1] = 0 else: data = data[..., :-1] data = torch.nan_to_num(data, nan=0.0) label = self.get_label(self.data, self.indexes[index]).unsqueeze(-1) torch.isnan(label) return data, label def __getitem_new__(self, index): latitude_start, longitude_start, month_start = self.indexes[index] data = self.data[latitude_start:latitude_start + self.lat_patch, longitude_start:longitude_start + self.lon_patch, month_start:month_start + self.window_size, ...].clone() # if self.config['add_history_target']: # data[:, :, -1, -1] = 0 # else: # data = data[..., :-1] data[:, :, :, -1] = 0 history_year = self.config['history_year'] # List of indices for the third dimension indices = [month_start + i*(-12) for i in range(1, history_year+1)] # print(month_start, month_start + self.window_size) # print(indices) # Use advanced indexing to get the slices data_history = self.data[latitude_start:latitude_start + self.lat_patch, longitude_start:longitude_start + self.lon_patch, indices, ...].clone() # print(data.shape, data_history.shape) data = torch.cat((data, data_history), dim=2) data = torch.nan_to_num(data, nan=0.0) label = self.get_label(self.data, self.indexes[index]).unsqueeze(-1) torch.isnan(label) return data, label def __len__(self): # Returns the size of the dataset return len(self.indexes) def get_data(mode, config): # get dataset # get feature and nbp data print('target:', config['target']) # preprocessed_path = os.path.join(os.path.dirname(__file__), config['preprocessed_data_dir'], '{}.feather'.format(mode)) preprocessed_path = os.path.join(config['preprocessed_data_dir'], '{}.feather'.format(mode)) print('read preprocessed data') # get preprocessed data from feather data = feather.read_feather(preprocessed_path, memory_map=True) # print(f"data.columns: {data.columns}") data = data[data['year']>=1990][config['columns']] data = optimize_floats(data) # read pft data # pft = feather.read_feather(os.path.join(os.path.dirname(__file__), config['pft_data_dir'], f"{config['target']}.feather"), memory_map=True) target_col = data.pop(config['target']) data[config['target']] = target_col print(f"data.columns: {data.columns}") return data # return data # def get_data(mode, config): # # get dataset # preprocessed_path = os.path.join(os.path.dirname(__file__), config['preprocessed_data_dir'], '{}.feather'.format(mode)) # if (not os.path.exists(preprocessed_path)): # # generate data and preprocessing # print('transfer {} data from csv to feather'.format(mode)) # data = pd.read_csv(os.path.join(config['split_data_dir'], '{}.csv'.format(mode))) # data.to_feather(preprocessed_path) # print('data preprocess finished! data shape:{}'.format(data.shape)) # else: # print('read preprocessed data') # # get preprocessed data from feather # # data = pd.read_feather(preprocessed_path, memory_map=True) # data = feather.read_feather(preprocessed_path, memory_map=True) # # data = optimize_floats(data) # return data[config['columns']] # # return data def optimize_floats(df): float64_cols = df.select_dtypes(include=['float64']).columns df[float64_cols] = df[float64_cols].astype('float32') return df def add_prefix(data, prefix_data, L): prefix_data = prefix_data.sort_values(by=['latitude', 'longitude', 'year', 'month']) prefix_data = prefix_data.groupby(['latitude', 'longitude'], group_keys=False).apply( lambda x: x.iloc[-L:] ).reset_index() data = pd.concat([prefix_data, data], axis=0) return data