import os import numpy as np import pandas as pd # import netCDF4 as nc import torch import torch.nn.functional as F from torch.distributions.kl import kl_divergence import einops def ramp_up(min_v, max_v, cur_t, MAX_T): cur_t = min(cur_t, MAX_T) return (max_v - min_v) / MAX_T * cur_t + min_v def mse_loss_with_nan(x, y, mask): y = torch.nan_to_num(y) loss = F.mse_loss(x, y, reduction='none') loss = (loss * mask).sum() / (mask.sum() + 1e-3) return loss def likelihood_with_mask(d, y, mask): y = torch.nan_to_num(y) p = -d.log_prob(y) p = (p * mask).sum() / (mask.sum() + 1e-3) return p def kl_div_with_mask(p, q, mask): kl_div = kl_divergence(p, q) kl_div = (kl_div * mask).sum() / (mask.sum() + 1e-3) return kl_div def augment(x, method='mask', intensity=0.1): def _mask(x): mask = torch.rand_like(x) mask = (mask < 1 - intensity).float() return x * mask def _shuffle(x): index = torch.randperm(x.size(-1)).to(x.device) perm_x = torch.index_select(x, -1, index) return x * (1 - intensity) + perm_x * intensity cat = x[..., :4] num = x[..., 4:] if method == 'mask': num = _mask(num) if method == 'shuffle': num = _shuffle(num) x = torch.cat([cat, num], dim=-1) return x def quantile_aug(x, quantile_num=10): # print('x start',x.shape) B, H, W, L, _ = x.size() x = einops.rearrange(x, ' b h w l f -> (b l f) h w', b=B, h=H, w=W, l=L) x= x.reshape(-1, H*W) # # origin fill with max of bin # quantile = torch.quantile(x, torch.tensor([i*(1/(quantile_num+1)) for i in range(quantile_num+2)]).to(x.device), dim=1, keepdim=True) # idx = (x>quantile).sum(dim=0) # x_new = torch.gather(quantile.permute(1,0,2).squeeze(), 1,idx) # fill with median of bin # print('quantile_num',quantile_num) # print('origin', x[10][:20]) # print('x reshape',x.shape) quantile = torch.quantile(x, torch.tensor([i*(1/(quantile_num+1)) for i in range(quantile_num+2)]).to(x.device), dim=1, keepdim=True) # print('quantile shape', quantile.shape) # print('quantile') # print(quantile[0]) # print(quantile.shape) idx = (x>=quantile[:quantile_num+1]).sum(dim=0) quantile = quantile.permute(1,0,2) quantile_new = (quantile[:,:quantile_num+1] + quantile[:,1:]) / 2 # print(quantile[10]) # print(quantile_new[10]) # print(quantile_new.shape) # print('idx',idx.shape) x_new = torch.gather(quantile_new.squeeze(), 1, idx-1) # print('new',x_new[10][:20]) # print(x_new.shape) x_new = einops.rearrange(x_new, ' (b l f) (h w) -> b h w l f', b=B, h=H, w=W, l=L) return x_new def nc2csv(start_year, end_year, obs_path, pro_dir, target_path): # initiate dataframe with year*month*latitude*longitude latitude_len, longitude_len = 180, 360 df = pd.MultiIndex.from_product([[year for year in range(start_year, end_year+1)], [month+1 for month in range(12)], [latitude for latitude in range(latitude_len)], [longitude for longitude in range(longitude_len)]], names=['year', 'month', 'latitude', 'longitude']).to_frame(index=False) # read observation data obs_data = nc.Dataset(obs_path) df['socat'] = obs_data.variables['observation data'][:].flatten() # read pro data for i in os.listdir(pro_dir): pro_data = nc.Dataset(os.path.join(pro_dir, i)) key = i.split('.')[0] df[key] = pro_data.variables[key][:].flatten() df.to_csv(target_path) return df def transfer_data(): setting = { 'train': (1959, 2013), 'valid': (2014, 2015), 'test': (2016, 2017) } for mode in setting.keys(): start_year, end_year = setting[mode] obs_path = '../data/origin_split_data/obs_data_{}/obs.nc'.format(mode) pro_dir = '../data/origin_split_data/pro_data_{}'.format(mode) target_path = '../data/split_data/{}.csv'.format(mode) nc2csv(start_year, end_year, obs_path, pro_dir, target_path) class StepLRWithMinLRScheduler: def __init__(self, optimizer, step_size, gamma, min_lr): self.step_lr = StepLR(optimizer, step_size=step_size, gamma=gamma) self.min_lr = min_lr self.optimizer = optimizer def step(self): self.step_lr.step() for param_group in self.optimizer.param_groups: if param_group['lr'] < self.min_lr: param_group['lr'] = self.min_lr def get_lr(self): return [param_group['lr'] for param_group in self.optimizer.param_groups] from torch.optim.lr_scheduler import CosineAnnealingLR class WarmUpLR(torch.optim.lr_scheduler._LRScheduler): def __init__(self, optimizer, warmup_epochs, base_lr, final_lr): self.warmup_epochs = warmup_epochs self.base_lr = base_lr self.final_lr = final_lr super().__init__(optimizer) def get_lr(self): if self.last_epoch < self.warmup_epochs: warmup_factor = (self.final_lr - self.base_lr) / self.warmup_epochs return [self.base_lr + warmup_factor * self.last_epoch for _ in self.optimizer.param_groups] else: return [self.final_lr for _ in self.optimizer.param_groups]