"""Pooled out-of-fold (OOF) evaluation. Each of the 33 samples is a test sample in exactly one of the 5 folds, so the fold predictions can be concatenated into a single OOF set of 33 trajectories. Per-target R2 computed on that pooled set is far more stable than averaging five per-fold R2 values, several of which are computed on 1-3 labelled samples. """ from __future__ import annotations import json import os from pathlib import Path from typing import Dict, List, Tuple import numpy as np import pandas as pd from .data import TARGETS, TARGET_KEYS from .metrics import PRIMARY, _r2, regression_metrics ROOT = Path(os.environ.get("PIMAMBA_ROOT") or Path(__file__).resolve().parents[2]) RUNS = ROOT / "results" / "runs" TABLES = ROOT / "results" / "tables" def gather(model: str, seed: int = 0, n_folds: int = 5, prefix: str = "main"): P, Y, M, S = [], [], [], [] for f in range(n_folds): d = RUNS / f"{prefix}_{model}_f{f}_s{seed}" / "predictions.npz" if not d.exists(): continue z = np.load(d, allow_pickle=True) P.append(z["pred"]); Y.append(z["true"]); M.append(z["mask"]) S.append(np.asarray(z["sids"])) if not P: return None return (np.concatenate(P, 0), np.concatenate(Y, 0), np.concatenate(M, 0), np.concatenate(S, 0)) def pooled_table(models: List[str], seed: int = 0, prefix: str = "main") -> Tuple[pd.DataFrame, pd.DataFrame]: rows, dec_rows = [], [] for m in models: g = gather(m, seed, prefix=prefix) if g is None: continue P, Y, M, S = g pt = regression_metrics(Y.reshape(-1, len(TARGETS)), P.reshape(-1, len(TARGETS)), M.reshape(-1, len(TARGETS))) r = {"model": m, "n_samples": len(S)} for k in TARGET_KEYS: v = pt[k] r[k] = round(v["r2"], 3) if np.isfinite(v["r2"]) else np.nan prim = [pt[k]["r2"] for k in PRIMARY if np.isfinite(pt[k]["r2"])] r["primary_mean"] = round(float(np.mean(prim)), 3) if prim else np.nan r["primary_median"] = round(float(np.median(prim)), 3) if prim else np.nan rows.append(r) j = TARGET_KEYS.index("sigma") mm = M[:, :, j] > 0 yv, pv = Y[:, :, j][mm], P[:, :, j][mm] ys, ps, lv = [], [], [] for i in range(len(S)): s = M[i, :, j] > 0 if s.sum() < 4: continue ys.append(Y[i, s, j] - Y[i, s, j].mean()) ps.append(P[i, s, j] - P[i, s, j].mean()) lv.append((Y[i, s, j].mean(), P[i, s, j].mean())) ys, ps = np.concatenate(ys), np.concatenate(ps) lv = np.array(lv) dec_rows.append({ "model": m, "sigma_r2": round(_r2(yv, pv), 3), "shape_r2": round(_r2(ys, ps), 3), "level_corr": round(float(np.corrcoef(lv[:, 0], lv[:, 1])[0, 1]), 3), "level_mae_GPa": round(float(np.mean(np.abs(lv[:, 0] - lv[:, 1]))), 3), "level_bias_GPa": round(float(np.mean(lv[:, 1] - lv[:, 0])), 3), "peak_rel_err": round(float(np.mean([ abs(max(P[i, M[i, :, j] > 0, j]) - max(Y[i, M[i, :, j] > 0, j])) / max(abs(max(Y[i, M[i, :, j] > 0, j])), 1e-6) for i in range(len(S)) if (M[i, :, j] > 0).sum() > 4])), 3), }) return pd.DataFrame(rows), pd.DataFrame(dec_rows) def ensemble(models: List[str], seed: int = 0, prefix: str = "main", prefixes: Dict[str, str] | None = None): """Average the normalised predictions of several runs (same fold split). All models see the identical test ids in the identical order, so the fold predictions are directly averageable; the result is inverse-transformed and scored exactly like a single model. """ from .metrics import regression_metrics Ps, Ys, Ms, Ss = [], None, None, None for m in models: pref = (prefixes or {}).get(m, prefix) g = gather(m, seed, prefix=pref) if g is None: continue P, Y, M, S = g Ps.append(P) Ys, Ms, Ss = Y, M, S if not Ps: return None P = np.mean(Ps, 0) pt = regression_metrics(Ys.reshape(-1, len(TARGETS)), P.reshape(-1, len(TARGETS)), Ms.reshape(-1, len(TARGETS))) prim = [pt[k]["r2"] for k in PRIMARY if np.isfinite(pt[k]["r2"])] return {"model": "+".join(models), "sigma_r2": round(pt["sigma"]["r2"], 3), "primary_mean": round(float(np.mean(prim)), 3)} NEXT = ["llama", "xlstm", "gdn", "hymba", "koopman", "node", "rssm", "flow", "pimamba2"] def main(): models = ["mlp", "gru", "lstm", "transformer", "mamba", "mamba2", "pimamba"] t, d = pooled_table(models) TABLES.mkdir(parents=True, exist_ok=True) t.to_csv(TABLES / "tab_pooled_per_target.csv", index=False) d.to_csv(TABLES / "tab_pooled_sigma.csv", index=False) ens = [] combos = [(["pimamba", "mamba"], None), (["pimamba", "llama"], {"llama": "next"}), (["pimamba", "xlstm"], {"xlstm": "next"}), (["pimamba", "gdn"], {"gdn": "next"}), (["pimamba", "koopman"], {"koopman": "next"}), (["pimamba", "node"], {"node": "next"}), (["hymba", "mamba"], {"hymba": "next"}), (["hymba", "mamba", "pimamba"], {"hymba": "next"}), (["hymba", "llama"], {"hymba": "next", "llama": "next"})] for combo, pref in combos: r = ensemble(combo, prefixes=pref) if r: ens.append(r) print("ensemble", r) if ens: pd.DataFrame(ens).to_csv(TABLES / "tab_ensemble.csv", index=False) t2, d2 = pooled_table(NEXT, prefix="next") if len(t2): t2.to_csv(TABLES / "tab_pooled_next_per_target.csv", index=False) d2.to_csv(TABLES / "tab_pooled_next_sigma.csv", index=False) print("\n## pooled OOF (next-gen)") print(t2.to_string(index=False)) V2 = ["pimamba2", "pimamba2_peak", "pimamba_peak", "pimamba2_nocouple"] t3, d3 = pooled_table(V2, prefix="v2") if len(t3): t3.to_csv(TABLES / "tab_pooled_v2_per_target.csv", index=False) d3.to_csv(TABLES / "tab_pooled_v2_sigma.csv", index=False) print("\n## pooled OOF (v2)") print(t3.to_string(index=False)) print("## pooled OOF per-target R2") print(t.to_string(index=False)) print("\n## pooled OOF stress decomposition") print(d.to_string(index=False)) if __name__ == "__main__": main()