"""Sync the working tree to the HuggingFace dataset repo. Usage: python scripts/upload_hf.py --dry-run python scripts/upload_hf.py --include-runs main_ abl_ loao_ de_ Checkpoints (``model.pt``) are only uploaded for the tags listed in ``KEEP_CKPT`` to keep the repo small; metrics/history/curves/predictions for every run are always uploaded. """ from __future__ import annotations import argparse import os from pathlib import Path from huggingface_hub import HfApi REPO = "eduzrh/training-model-material" REPO_TYPE = "dataset" ROOT = Path(__file__).resolve().parents[1] # directories uploaded verbatim (relative to repo root) DIRS = ["code", "docs", "scripts", "data", "results/tables", "results/figures", "report", "configs", "logs"] IGNORE = ["**/__pycache__/**", "**/*.pyc", "**/.ipynb_checkpoints/**", "**/*.pt", "**/predictions.npz", "**/_tables_ro/**", "**/_figures_ro/**"] KEEP_CKPT: tuple[str, ...] = ("main_pimamba_f0_s0", "main_mamba_f0_s0", "main_gru_f0_s0", "abl_pimamba_f0_s0", "next_hymba_f0_s0", "v2_pimamba2_f0_s0") def _token(explicit: str | None) -> str: tok = explicit or os.environ.get("HF_TOKEN") if not tok: # fall back to the credential saved by `huggingface-cli login` try: from huggingface_hub import get_token tok = get_token() except Exception: # noqa: BLE001 tok = None if not tok: raise SystemExit("no HF token: pass --token, set HF_TOKEN or run hf login") return tok def main(): ap = argparse.ArgumentParser() ap.add_argument("--token", default=None) ap.add_argument("--repo", default=REPO) ap.add_argument("--include-runs", nargs="*", default=None, help="only upload results/runs tags starting with these prefixes") ap.add_argument("--dry-run", action="store_true") ap.add_argument("--private", action="store_true") a = ap.parse_args() tok = _token(a.token) api = HfApi(token=tok) api.create_repo(a.repo, repo_type=REPO_TYPE, exist_ok=True, private=a.private) targets: list[Path] = [] for d in DIRS: p = ROOT / d if p.exists(): targets.append(p) # run folders: bulk upload in ONE commit when possible (250+ folders would # otherwise mean 250+ commits), with stale/debug tags filtered out. run_root = ROOT / "results" / "runs" keep_tags = _summary_tags() extra_ignore = list(IGNORE) if run_root.exists(): if a.include_runs: for p in sorted(run_root.iterdir()): if p.is_dir() and any(p.name.startswith(x) for x in a.include_runs): targets.append(p) else: drop = {d.name for d in run_root.iterdir() if d.is_dir()} - keep_tags extra_ignore += [f"{t}/**" for t in sorted(drop)] targets.append(run_root) print(f"bulk runs: keeping {len(keep_tags)} tags, skipping {len(drop)}") for f in ["README.md", "requirements.txt", ".gitignore", "results/RESULTS.md", "results/summary.csv"]: p = ROOT / f if p.exists(): targets.append(p) n_files = 0 total = 0 for p in targets: rel = p.relative_to(ROOT).as_posix() files = [p] if p.is_file() else [q for q in p.rglob("*") if q.is_file()] files = [q for q in files if not _ignored(q.relative_to(ROOT).as_posix())] if not files: continue size = sum(q.stat().st_size for q in files) n_files += len(files) total += size print(f"{rel:45s} {len(files):5d} files {size/1e6:8.2f} MB") if a.dry_run: continue if p.is_file(): api.upload_file(path_or_fileobj=str(p), path_in_repo=rel, repo_id=a.repo, repo_type=REPO_TYPE, commit_message=f"sync {rel}") continue api.upload_folder(folder_path=str(p), path_in_repo=rel, repo_id=a.repo, repo_type=REPO_TYPE, ignore_patterns=extra_ignore, commit_message=f"sync {rel}") # fold predictions of the seed-0 main runs: needed to reproduce pooled OOF if not a.dry_run: for m in ["mlp", "gru", "lstm", "transformer", "mamba", "mamba2", "pimamba"]: for f in range(5): pf = run_root / f"main_{m}_f{f}_s0" / "predictions.npz" if pf.exists(): api.upload_file(path_or_fileobj=str(pf), path_in_repo=f"results/runs/main_{m}_f{f}_s0/predictions.npz", repo_id=a.repo, repo_type=REPO_TYPE, commit_message=f"oof predictions {m} f{f}") # checkpoints worth keeping for tag in KEEP_CKPT: ck = run_root / tag / "model.pt" if ck.exists(): print(f"checkpoint {tag} ({ck.stat().st_size/1e6:.1f} MB)") if not a.dry_run: api.upload_file(path_or_fileobj=str(ck), path_in_repo=f"results/runs/{tag}/model.pt", repo_id=a.repo, repo_type=REPO_TYPE, commit_message=f"checkpoint {tag}") print(f"\ntotal {n_files} files, {total/1e6:.1f} MB") def _summary_tags() -> set[str]: """Only publish runs that actually appear in results/summary.csv.""" import csv f = ROOT / "results" / "summary.csv" if not f.exists(): return set() with f.open(encoding="utf-8") as fh: return {r["tag"] for r in csv.DictReader(fh) if r.get("tag")} def _ignored(rel: str) -> bool: import fnmatch for pat in IGNORE: p = pat.replace("**/", "").replace("/**", "") if fnmatch.fnmatch(rel, pat) or fnmatch.fnmatch(rel.split("/")[-1], p): return True if "/__pycache__/" in rel: return True return False if __name__ == "__main__": main()