diff --git a/.gitattributes b/.gitattributes index 6213f826651e8621e2e39ed8eac990a891cd587b..e317ae16309c25e1ebb9d53d41ac1c9cbdfc54b8 100644 --- a/.gitattributes +++ b/.gitattributes @@ -829,4 +829,3 @@ deepfluoro/subject06/xrays/020.dcm filter=lfs diff=lfs merge=lfs -text deepfluoro/subject06/xrays/021.dcm filter=lfs diff=lfs merge=lfs -text deepfluoro/subject06/xrays/022.dcm filter=lfs diff=lfs merge=lfs -text deepfluoro/subject06/xrays/023.dcm filter=lfs diff=lfs merge=lfs -text -*.dcm filter=lfs diff=lfs merge=lfs -text diff --git a/README.md b/README.md index e392bab305f2eab13093477c156d3007bf2c4869..fd5d9a3f931c2112a07508b59a0e165b8dea563c 100644 --- a/README.md +++ b/README.md @@ -2,53 +2,37 @@ license: cc-by-nc-nd-4.0 task_categories: - image-to-image -pretty_name: xvr datasets --- -**⚠️ IF YOU USE THESE DATASETS, PLEASE CITE THE ORIGINAL PAPERS AND RESPECT THEIR ORIGINAL LICENSES. ⚠️** +`xvr-data` contains DICOM/NIfTI versions of the `DeepFluoro` and `Ljubljana` datasets. -`xvr-data` contains DICOM/NIfTI versions of the `DeepFluoro`, `Femur`, and `Ljubljana` datasets. - -- Paper: [Rapid patient-specific neural networks for intraoperative X-ray to volume registration](https://huggingface.co/papers/2503.16309) -- Code: https://github.com/eigenvivek/xvr +Paper: [Rapid patient-specific neural networks for intraoperative X-ray to volume registration](https://huggingface.co/papers/2503.16309) +Code: https://github.com/eigenvivek/xvr ## Citation -If you use the [`DeepFluoro`](https://github.com/rg2/DeepFluoroLabeling-IPCAI2020) dataset (CC BY-NC 4.0), please cite: - - @article{grupp2020automatic, - title={Automatic annotation of hip anatomy in fluoroscopy for robust and efficient 2D/3D registration}, - author={Grupp, Robert B and Unberath, Mathias and Gao, Cong and Hegeman, Rachel A and Murphy, Ryan J and Alexander, Clayton P and Otake, Yoshito and McArthur, Benjamin A and Armand, Mehran and Taylor, Russell H}, - journal={International Journal of Computer Assisted Radiology and Surgery}, - volume={15}, - pages={759--769}, - year={2020}, - publisher={Springer} - } - -If you use the [`Femur`](https://rflepp.github.io/BoneSubstructureContours2D3DRegistration/) dataset (CC BY-NC-ND 4.0; remixed version hosted with permission from original authors), please cite: - - @article{flepp2025automatic, - title={Automatic multi-view X-ray/CT registration using bone substructure contours}, - author={Flepp, Roman and Nissen, Leon and Sigrist, Bastian and Nieuwland, Arend and Cavalcanti, Nicola and F{\"u}rnstahl, Philipp and Dreher, Thomas and Calvet, Lilian}, - journal={International Journal of Computer Assisted Radiology and Surgery}, - volume={20}, - number={7}, - pages={1401--1408}, - year={2025}, - publisher={Springer} +If you use either of these datasets, please cite the original papers. + +```bibtex +@article{grupp2020automatic, + title={Automatic annotation of hip anatomy in fluoroscopy for robust and efficient 2D/3D registration}, + author={Grupp, Robert B and Unberath, Mathias and Gao, Cong and Hegeman, Rachel A and Murphy, Ryan J and Alexander, Clayton P and Otake, Yoshito and McArthur, Benjamin A and Armand, Mehran and Taylor, Russell H}, + journal={International journal of computer assisted radiology and surgery}, + volume={15}, + pages={759--769}, + year={2020}, + publisher={Springer} } -If you use the [`Ljubljana`](https://lit.fe.uni-lj.si/en/research/resources/3D-2D-GS-CA/) dataset (CC BY-NC-ND 4.0; remixed version hosted with permission from original authors), please cite: - - @article{pernus20133d, - title={3D-2D registration of cerebral angiograms: A method and evaluation on clinical images}, - author={Mitrović, Uroš and Špiclin, Žiga and Likar, Boštjan and Pernuš, Franjo}, - journal={IEEE Transactions on Medical Imaging}, - volume={32}, - number={8}, - pages={1550--1563}, - year={2013}, - publisher={IEEE} - } \ No newline at end of file +@article{pernus20133d, + title={3D-2D registration of cerebral angiograms: A method and evaluation on clinical images}, + author={Mitrović, Uros˘ and S˘piclin, Z˘iga and Likar, Bos˘tjan and Pernus˘, Franjo}, + journal={IEEE transactions on medical imaging}, + volume={32}, + number={8}, + pages={1550--1563}, + year={2013}, + publisher={IEEE} +} +``` \ No newline at end of file diff --git a/deepfluoro/LICENSE b/deepfluoro/LICENSE deleted file mode 100644 index 12d4ca74d98cfb36269464dced75e9441b7bf645..0000000000000000000000000000000000000000 --- a/deepfluoro/LICENSE +++ /dev/null @@ -1,407 +0,0 @@ -Attribution-NonCommercial 4.0 International - -======================================================================= - -Creative Commons Corporation ("Creative Commons") is not a law firm and -does not provide legal services or legal advice. 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For -the avoidance of doubt, this paragraph does not form part of the -public licenses. - -Creative Commons may be contacted at creativecommons.org. \ No newline at end of file diff --git a/deepfluoro/README.md b/deepfluoro/README.md index a3bf28aadf27b1053f10b37c6a427717cfe9e535..c83fc6274e5da75442f197929aa33243404dea4d 100644 --- a/deepfluoro/README.md +++ b/deepfluoro/README.md @@ -10,13 +10,4 @@ pages={759--769}, year={2020}, publisher={Springer} - } - -## `segmentations_multichannel/` - -Packed 7-channel masks, one `.pt` per X-ray. Each is a `(1536, 1536)` `uint8` array where bit `i` is label `i+1` (0: L-hemipelvis, 1: R-hemipelvis, 2: vertebrae, 3: upper sacrum, 4: L-femur, 5: R-femur, 6: lower sacrum). - -```python -packed = torch.load(path) # (1536, 1536) uint8 -masks = (packed[None] >> torch.arange(7)[:, None, None]) & 1 # (7, 1536, 1536) bool -``` \ No newline at end of file + } \ No newline at end of file diff --git a/deepfluoro/subject01/fiducials.pt b/deepfluoro/subject01/fiducials.pt index c4613ad3f55c1e13f4fa0526fc4b7853ca10cb5a..f3e39b406817fccfae05223364581468684b0443 100644 Binary files a/deepfluoro/subject01/fiducials.pt and b/deepfluoro/subject01/fiducials.pt differ diff --git a/deepfluoro/subject01/segmentations_multichannel/000.pt b/deepfluoro/subject01/segmentations_multichannel/000.pt deleted file mode 100644 index 8d70ea70e62e6035ab0135bcc8697026b2a27fd8..0000000000000000000000000000000000000000 --- a/deepfluoro/subject01/segmentations_multichannel/000.pt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:8887e702a6b485ab30c4d3d93fe275b1acac507c5b5472054e740f256c77ce9f -size 2360781 diff --git a/deepfluoro/subject01/segmentations_multichannel/001.pt b/deepfluoro/subject01/segmentations_multichannel/001.pt deleted file mode 100644 index 86352021d4a6135099b25f6e8502e2a4281cc833..0000000000000000000000000000000000000000 --- a/deepfluoro/subject01/segmentations_multichannel/001.pt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:5aa9cb78b776b4454dc192624ed80bf3157f37811419c113042687ed3cd6eff1 -size 2360781 diff --git a/deepfluoro/subject01/segmentations_multichannel/002.pt b/deepfluoro/subject01/segmentations_multichannel/002.pt deleted file mode 100644 index 74d16ee19e6b991944631df194014bd9b23b25da..0000000000000000000000000000000000000000 --- a/deepfluoro/subject01/segmentations_multichannel/002.pt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:4c2161e1562c5d868f67e0e33230a553224f9565c714e93ad79fdf4c714a38e9 -size 2360781 diff --git a/deepfluoro/subject01/segmentations_multichannel/003.pt b/deepfluoro/subject01/segmentations_multichannel/003.pt deleted file mode 100644 index 96362cc93d70bc2b5d2ce10b2b33397cd9cbd6a0..0000000000000000000000000000000000000000 --- a/deepfluoro/subject01/segmentations_multichannel/003.pt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:4464e266e7c079b476bff466de395c03b569b07e3db70416effe273d97960782 -size 2360781 diff --git a/deepfluoro/subject01/segmentations_multichannel/004.pt b/deepfluoro/subject01/segmentations_multichannel/004.pt deleted file mode 100644 index f45d30237015fd4b5e706e9e92c753bb6d830629..0000000000000000000000000000000000000000 --- a/deepfluoro/subject01/segmentations_multichannel/004.pt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:a0ae9accbd3d6b57cc54d89c75bab68afa10350b7aa17c849cd130f837838ba4 -size 2360781 diff --git a/deepfluoro/subject01/segmentations_multichannel/005.pt b/deepfluoro/subject01/segmentations_multichannel/005.pt deleted file mode 100644 index 0d72c41e7ecd6c7b31ba3c6c8e3675e92834025a..0000000000000000000000000000000000000000 --- a/deepfluoro/subject01/segmentations_multichannel/005.pt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:6bdafd436bcfa63f7f6a57da251ec4fa14854c259e1c86822eeaf10d9015b1d5 -size 2360781 diff --git a/deepfluoro/subject01/segmentations_multichannel/006.pt b/deepfluoro/subject01/segmentations_multichannel/006.pt deleted file mode 100644 index ba86fa6a70ebee8c793fd810823891b0bf527fc8..0000000000000000000000000000000000000000 --- a/deepfluoro/subject01/segmentations_multichannel/006.pt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:f0da04b0a56a35d0b7be06e822a3076bcdbe7d1068eff79dd580b7872980e636 -size 2360781 diff --git a/deepfluoro/subject01/segmentations_multichannel/007.pt b/deepfluoro/subject01/segmentations_multichannel/007.pt deleted file mode 100644 index b444cf6809421cc864a6fe2d8195222c499a00a3..0000000000000000000000000000000000000000 --- a/deepfluoro/subject01/segmentations_multichannel/007.pt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:704237e47ca6bd7dffe3c6e0c3bec411b37e924af38cdace6199b0c440d6c46d -size 2360781 diff --git a/deepfluoro/subject01/segmentations_multichannel/008.pt b/deepfluoro/subject01/segmentations_multichannel/008.pt deleted file mode 100644 index 62dc28bfbcd253b7c9701f2dff3b36338fde31ee..0000000000000000000000000000000000000000 --- a/deepfluoro/subject01/segmentations_multichannel/008.pt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid 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sha256:c0c6d473d7858899f9bc4889184e5bc540fa50e9de6ea1d57797be28529bcafc -size 953142 diff --git a/femur/subject02/xrays/17.pt b/femur/subject02/xrays/17.pt deleted file mode 100644 index ec14d87badfb4a9a12f5e9083582dd9b4385b6f5..0000000000000000000000000000000000000000 --- a/femur/subject02/xrays/17.pt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:2b77b5242539f452e76b742fd6301bd04fcc4129d1013476006d7eccd10a0fd8 -size 1670 diff --git a/femur/subject03/fiducials.pt b/femur/subject03/fiducials.pt deleted file mode 100644 index fe8226813daccdbeb3212b7f31f9eff8def6e182..0000000000000000000000000000000000000000 --- a/femur/subject03/fiducials.pt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:efb69c9047c6aca08b06d988e27b5a99310d46a8dd46e00aa3590851e91cfcad -size 2039 diff --git a/femur/subject03/mask.nii.gz b/femur/subject03/mask.nii.gz deleted file mode 100644 index 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MatrixOffsetTransformBase_double_3_3 -Parameters: 0.8217476171242238 -0.5591150535105629 -0.11009648442268372 0.5379836739525682 0.8248797884255198 -0.17362862825393677 0.18789473465657905 0.08344880139081061 0.9786377549171448 -6.672155737876892 -19.03224441409111 2096.5815547555685 -FixedParameters: 0 0 0 diff --git a/femur/subject03/xrays/09.dcm b/femur/subject03/xrays/09.dcm deleted file mode 100644 index 7d8f138f91adc9f18151a29cbbdf05c7a6898e5a..0000000000000000000000000000000000000000 --- a/femur/subject03/xrays/09.dcm +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:9a5d6c14403664ceb342ef41ae2cdb4b3a745cd77e2817ddb86d70d6649855cf -size 953142 diff --git a/femur/subject03/xrays/09.pt b/femur/subject03/xrays/09.pt deleted file mode 100644 index 57e78fd7cda706e13ac469ff30056b5bd33c9a6b..0000000000000000000000000000000000000000 --- a/femur/subject03/xrays/09.pt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid 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sha256:7914de5faebc12d94de69b922947af5156e76187025fbcb9e9852a3bbdc95493 -size 1670 diff --git a/femur/subject03/xrays/17.dcm b/femur/subject03/xrays/17.dcm deleted file mode 100644 index 5851ec6f3e0ca5de8d4a6b4ab58667afb10aa9db..0000000000000000000000000000000000000000 --- a/femur/subject03/xrays/17.dcm +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:901e1ed0e41367bf888d4ca807a90801b1b9f2e1ce4fefab751df308a15c9677 -size 953142 diff --git a/femur/subject03/xrays/17.pt b/femur/subject03/xrays/17.pt deleted file mode 100644 index 1f21dae61e85ed593f586f3cacdf888e779f2503..0000000000000000000000000000000000000000 --- a/femur/subject03/xrays/17.pt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:f8bc20cda62c13799800bca17ac7d16a1b2d067d0f8e2041eb968546c6beac78 -size 1670 diff --git a/femur/subject03/xrays/18.dcm b/femur/subject03/xrays/18.dcm deleted file mode 100644 index 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sha256:46754a72b228a3fe6e0c6c3b2be93721d80099d5022b6136fed30eacbb3efaa6 -size 83134 diff --git a/femur/subject04/volume.nii.gz b/femur/subject04/volume.nii.gz deleted file mode 100644 index 5f68e1a25e91972c0a338a903fb7935ee70efbd7..0000000000000000000000000000000000000000 --- a/femur/subject04/volume.nii.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:8783cb3c39eff1be35c50e1673a76c9d84bb0c94402e25be6d52a0656771ef51 -size 55910026 diff --git a/femur/subject04/warp.txt b/femur/subject04/warp.txt deleted file mode 100644 index 9954a93b81ca76902600a55fb9cd8fd84bf50af7..0000000000000000000000000000000000000000 --- a/femur/subject04/warp.txt +++ /dev/null @@ -1,5 +0,0 @@ -#Insight Transform File V1.0 -#Transform 0 -Transform: MatrixOffsetTransformBase_double_3_3 -Parameters: 0.9547892955672922 0.2969643776154158 -0.013769910938390644 -0.29701091197860424 0.9548730046908748 -0.0014208399282067284 0.012726577775267237 0.00544641651293629 0.9999041634306876 -33.922573447905705 -12.148013171976345 1829.4099230145587 -FixedParameters: 0 0 0 diff --git a/femur/subject04/xrays/08.dcm b/femur/subject04/xrays/08.dcm deleted file mode 100644 index 950f2ea8f2b4f22033fbd6a67d09e9d59e1645e1..0000000000000000000000000000000000000000 --- a/femur/subject04/xrays/08.dcm +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:59a75896833b3dfe45eb781f655b5bbae79c29f6d98bc5dfa82835ff957f7ac3 -size 953142 diff --git a/femur/subject04/xrays/08.pt b/femur/subject04/xrays/08.pt deleted file mode 100644 index e5c6605d8007b98eaab3982339d443951b238d07..0000000000000000000000000000000000000000 --- a/femur/subject04/xrays/08.pt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:aa8a3416fba31d0ff03055e348a6beeb232adee0f3c47b6bcf4959296a2420e1 -size 1670 diff --git a/femur/subject04/xrays/09.dcm b/femur/subject04/xrays/09.dcm deleted file mode 100644 index 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sha256:477d1bee1e7e836b60a03ba8ef047c6c0182fe8da4e3e8e0a62bf1b8f52f4a5b -size 953142 diff --git a/femur/subject04/xrays/12.pt b/femur/subject04/xrays/12.pt deleted file mode 100644 index 478ca52aa383d11e71a621ac37aba2927d7f07ab..0000000000000000000000000000000000000000 --- a/femur/subject04/xrays/12.pt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:833470ad74eb4c0b9ca52e9e05a96e60c2aca9f08c11b9327e2890f921a080cc -size 1670 diff --git a/femur/subject04/xrays/15.dcm b/femur/subject04/xrays/15.dcm deleted file mode 100644 index 4b2dfd664dae9cc02139ec70bfdb15df0ac147d5..0000000000000000000000000000000000000000 --- a/femur/subject04/xrays/15.dcm +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:bf95bc4c8acef5f56671f435383871b1f8bf88484cb30192dd6d6d47e17ee71d -size 953142 diff --git a/femur/subject04/xrays/15.pt b/femur/subject04/xrays/15.pt deleted file mode 100644 index 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sha256:c9356407f7d8907c2b9a25a700e5a94f3cd895cd11696243c01faaf219740a0d -size 1670 diff --git a/femur/subject04/xrays/17.dcm b/femur/subject04/xrays/17.dcm deleted file mode 100644 index f32b5e17060bb8dcbb497aa01786e04820b42366..0000000000000000000000000000000000000000 --- a/femur/subject04/xrays/17.dcm +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:a69d4c792d70476be8f49c472ebbc6c8dff5813063c5e2c2b3e372e713b66a31 -size 953142 diff --git a/femur/subject04/xrays/17.pt b/femur/subject04/xrays/17.pt deleted file mode 100644 index 7e7ad0ca5d6fb162190b1b6bd87a38a2250ab4a3..0000000000000000000000000000000000000000 --- a/femur/subject04/xrays/17.pt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:847252a0a8f170fa6a746915e13c63a833f0c8b2a43705703f585143be836a60 -size 1670 diff --git a/femur/subject04/xrays/18.dcm b/femur/subject04/xrays/18.dcm deleted file mode 100644 index 830c42dd45a18f97c92501ac9e7d790fdc1ad57f..0000000000000000000000000000000000000000 --- a/femur/subject04/xrays/18.dcm +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:a23b4dfdc3f4158c2ffcb380bd83a30096cfba6466a40b5a3b93e692ca72ef5e -size 953142 diff --git a/femur/subject04/xrays/18.pt b/femur/subject04/xrays/18.pt deleted file mode 100644 index 688e2824a2d76c1bcefc50332f579b264b736051..0000000000000000000000000000000000000000 --- a/femur/subject04/xrays/18.pt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:7c95f71f1d88d86ebad521c86605940690d216b8ce61fad433d123d2551edeec -size 1670 diff --git a/femur/subject04/xrays/20.dcm b/femur/subject04/xrays/20.dcm deleted file mode 100644 index f46b93d51df26fe2a09229b7fe9d583ed0559102..0000000000000000000000000000000000000000 --- a/femur/subject04/xrays/20.dcm +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:e1f73680ef4288305df2f2a7a8cd91dc1555d935337272dac02dc45e754b3c5f -size 953142 diff --git a/femur/subject04/xrays/20.pt b/femur/subject04/xrays/20.pt deleted file mode 100644 index 6e7d02df3bd85c4a7f35b18a7ad454984e31d780..0000000000000000000000000000000000000000 --- a/femur/subject04/xrays/20.pt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:ed019a03b6cdc3b07017786b1d9f0fd934e40d785258d0167ed697c4f99aba40 -size 1670 diff --git a/femur/subject04/xrays/21.dcm b/femur/subject04/xrays/21.dcm deleted file mode 100644 index 9493d6b1d695faef6a9da306ac2c0599c28bcc77..0000000000000000000000000000000000000000 --- a/femur/subject04/xrays/21.dcm +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:b536a89dcf28e19d489777c355b4e2a9f9d42509bdff23fa01abaaa3a77769a3 -size 953142 diff --git a/femur/subject04/xrays/21.pt b/femur/subject04/xrays/21.pt deleted file mode 100644 index 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Except for the limited purpose of indicating that -material is shared under a Creative Commons public license or as -otherwise permitted by the Creative Commons policies published at -creativecommons.org/policies, Creative Commons does not authorize the -use of the trademark "Creative Commons" or any other trademark or logo -of Creative Commons without its prior written consent including, -without limitation, in connection with any unauthorized modifications -to any of its public licenses or any other arrangements, -understandings, or agreements concerning use of licensed material. For -the avoidance of doubt, this paragraph does not form part of the -public licenses. - -Creative Commons may be contacted at creativecommons.org. diff --git a/ljubljana/subject01/fiducials.pt b/ljubljana/subject01/fiducials.pt index 619158b0a8f636248d05c10a3fcdf15554dec04d..79f414bdf8d8f93bc3a773f9a905bc5b7070bcd1 100644 Binary files a/ljubljana/subject01/fiducials.pt and b/ljubljana/subject01/fiducials.pt differ diff --git a/ljubljana/subject01/warp.txt b/ljubljana/subject01/warp.txt index 994daf672b46f49927b1c9c7422e70c5a23869fe..4dc850ebf83073b65f0e3c2357d36b3a51e7000e 100644 --- a/ljubljana/subject01/warp.txt +++ b/ljubljana/subject01/warp.txt @@ -1,5 +1,5 @@ #Insight Transform File V1.0 #Transform 0 Transform: MatrixOffsetTransformBase_double_3_3 -Parameters: 1 0 0 0 1 0 0 0 1 238.07662963867188 21.018692016601562 -787.500001937151 +Parameters: 0.9999999764839571 0 0 0 0.9999999764839571 0 0 0 1.0000000031628549 238.19415246243588 5.010705129028181 1.9353629038474058 FixedParameters: 0 0 0 diff --git a/ljubljana/subject02/fiducials.pt b/ljubljana/subject02/fiducials.pt index 7b51aa86b727b12d9d357306aba65463d9df4aaa..f98e8758bd7ec4fff4dd2f9465e04fe5ab59424e 100644 Binary files a/ljubljana/subject02/fiducials.pt and b/ljubljana/subject02/fiducials.pt differ diff --git a/ljubljana/subject02/warp.txt b/ljubljana/subject02/warp.txt index 994daf672b46f49927b1c9c7422e70c5a23869fe..25059412c0500385b18e94918060735145e63b55 100644 --- a/ljubljana/subject02/warp.txt +++ b/ljubljana/subject02/warp.txt @@ -1,5 +1,5 @@ #Insight Transform File V1.0 #Transform 0 Transform: MatrixOffsetTransformBase_double_3_3 -Parameters: 1 0 0 0 1 0 0 0 1 238.07662963867188 21.018692016601562 -787.500001937151 +Parameters: 0.9999999764839571 0 0 0 0.9999999764839571 0 0 0 1.0000000031628549 239.27375655226098 5.172753016451271 20.6000192632815 FixedParameters: 0 0 0 diff --git a/ljubljana/subject03/fiducials.pt b/ljubljana/subject03/fiducials.pt index ddcc02382b6ad2e457ab25aafa02fb162a3b112d..bb4852e2cdb82e9b54a2c4b2ed310410d5b909b4 100644 Binary files a/ljubljana/subject03/fiducials.pt and b/ljubljana/subject03/fiducials.pt differ diff --git a/ljubljana/subject03/warp.txt b/ljubljana/subject03/warp.txt index f779a64cfc42570fc8da61b15c0f19f4c43e3aec..e97036f405f1e4269cae3da2f31f1f6914fc6842 100644 --- a/ljubljana/subject03/warp.txt +++ b/ljubljana/subject03/warp.txt @@ -1,5 +1,5 @@ #Insight Transform File V1.0 #Transform 0 Transform: MatrixOffsetTransformBase_double_3_3 -Parameters: 1 0 0 0 1 0 0 0 1 238.07662963867188 21.018692016601562 -787.2677173912525 +Parameters: 0.9999999999999997 0 0 0 0.9680709830164336 -0.2506762291115686 0 0.25067622911156867 0.9680709830164337 237.3151035308838 0.6772709840673807 27.570823517275077 FixedParameters: 0 0 0 diff --git a/ljubljana/subject04/fiducials.pt b/ljubljana/subject04/fiducials.pt index 7ec7b80410078c6ee30287783e6349b6352b5e7f..04063a87cc9c5357ce24a20f1ca42c7dd0322743 100644 Binary files a/ljubljana/subject04/fiducials.pt and b/ljubljana/subject04/fiducials.pt differ diff --git a/ljubljana/subject04/warp.txt b/ljubljana/subject04/warp.txt index 994daf672b46f49927b1c9c7422e70c5a23869fe..2d19ece936f62f151ad06a1307df5356a2a07800 100644 --- a/ljubljana/subject04/warp.txt +++ b/ljubljana/subject04/warp.txt @@ -1,5 +1,5 @@ #Insight Transform File V1.0 #Transform 0 Transform: MatrixOffsetTransformBase_double_3_3 -Parameters: 1 0 0 0 1 0 0 0 1 238.07662963867188 21.018692016601562 -787.500001937151 +Parameters: 0.9999999764839577 0 0 0 0.7610677461375637 -0.6486723662659016 0 0.648672383571766 0.7610677664420127 238.24916681846722 -6.798195852385392 8.118872834936656 FixedParameters: 0 0 0 diff --git a/ljubljana/subject05/fiducials.pt b/ljubljana/subject05/fiducials.pt index 279e8baa3adecc06b1f9ec05a128b1dbb755840a..0e63ae92113494cc93de3b56011dab2da9f5dcdc 100644 Binary files a/ljubljana/subject05/fiducials.pt and b/ljubljana/subject05/fiducials.pt differ diff --git a/ljubljana/subject05/warp.txt b/ljubljana/subject05/warp.txt index f779a64cfc42570fc8da61b15c0f19f4c43e3aec..a0fb28b506cb017752635e50d83b199c42ad4463 100644 --- a/ljubljana/subject05/warp.txt +++ b/ljubljana/subject05/warp.txt @@ -1,5 +1,5 @@ #Insight Transform File V1.0 #Transform 0 Transform: MatrixOffsetTransformBase_double_3_3 -Parameters: 1 0 0 0 1 0 0 0 1 238.07662963867188 21.018692016601562 -787.2677173912525 +Parameters: 0.9999999764839568 0 0 0 0.9568975155605425 -0.29042571801060635 0 0.29042572575884457 0.9568975410895143 233.136532368861 -13.49700510174911 -0.14456642096576805 FixedParameters: 0 0 0 diff --git a/ljubljana/subject06/fiducials.pt b/ljubljana/subject06/fiducials.pt index fe56760abb62ceb19288810abd1de44b49692139..951c421797e0e763cd57d7f7311b86ae4e7d1d19 100644 Binary files a/ljubljana/subject06/fiducials.pt and b/ljubljana/subject06/fiducials.pt differ diff --git a/ljubljana/subject06/warp.txt b/ljubljana/subject06/warp.txt index d46c642b1c2f5839ae176802cec859443cf1a573..e162cf07025bdcece23138d80f9433f2428e73fc 100644 --- a/ljubljana/subject06/warp.txt +++ b/ljubljana/subject06/warp.txt @@ -1,5 +1,5 @@ #Insight Transform File V1.0 #Transform 0 Transform: MatrixOffsetTransformBase_double_3_3 -Parameters: 1 0 0 0 1 0 0 0 1 238.07662963867188 21.018692016601562 -787.2677174210548 +Parameters: 0.9998987831427003 -0.001377075057598848 -0.014160760362108655 0 0.9953048973586509 -0.0967892622860885 0.014227560217666566 0.09677946558113955 0.9952041557248857 238.32538980213545 5.7881161463594974 19.685507102325598 FixedParameters: 0 0 0 diff --git a/ljubljana/subject07/fiducials.pt b/ljubljana/subject07/fiducials.pt index 22f3e92f1df688b6122efea5c1ee1295df57af87..d24f8bd8aee07e0262ffad1e2d977818f2016001 100644 Binary files a/ljubljana/subject07/fiducials.pt and b/ljubljana/subject07/fiducials.pt differ diff --git a/ljubljana/subject07/warp.txt b/ljubljana/subject07/warp.txt index f779a64cfc42570fc8da61b15c0f19f4c43e3aec..b555713cf63dc5d4912da1636a3d532539599a56 100644 --- a/ljubljana/subject07/warp.txt +++ b/ljubljana/subject07/warp.txt @@ -1,5 +1,5 @@ #Insight Transform File V1.0 #Transform 0 Transform: MatrixOffsetTransformBase_double_3_3 -Parameters: 1 0 0 0 1 0 0 0 1 238.07662963867188 21.018692016601562 -787.2677173912525 +Parameters: 1 0 0 0 1 0 0 0 1 244.0842867496246 -8.267736047620517 4.209039348476537 FixedParameters: 0 0 0 diff --git a/ljubljana/subject08/fiducials.pt b/ljubljana/subject08/fiducials.pt index 5c822f58815af224f5efda4a97835128216799f0..29206654d6c295c579a24220aa3f91231e6b4e09 100644 Binary files a/ljubljana/subject08/fiducials.pt and b/ljubljana/subject08/fiducials.pt differ diff --git a/ljubljana/subject08/warp.txt b/ljubljana/subject08/warp.txt index f779a64cfc42570fc8da61b15c0f19f4c43e3aec..5674c5c19f39dfda38f424e2a97bb692fd219043 100644 --- a/ljubljana/subject08/warp.txt +++ b/ljubljana/subject08/warp.txt @@ -1,5 +1,5 @@ #Insight Transform File V1.0 #Transform 0 Transform: MatrixOffsetTransformBase_double_3_3 -Parameters: 1 0 0 0 1 0 0 0 1 238.07662963867188 21.018692016601562 -787.2677173912525 +Parameters: 0.9999999999999996 0 0 0 0.905961863390959 -0.42335930612327605 0 0.42335930612327616 0.9059618633909593 237.6944138610957 -7.057919781703216 17.29396239334547 FixedParameters: 0 0 0 diff --git a/ljubljana/subject09/fiducials.pt b/ljubljana/subject09/fiducials.pt index 35b67805b7bf6b67acdc5a9730fb05a8d7511f44..d791a9baf2a54b207969a136b85e95c37b4d5d12 100644 Binary files a/ljubljana/subject09/fiducials.pt and b/ljubljana/subject09/fiducials.pt differ diff --git a/ljubljana/subject09/warp.txt b/ljubljana/subject09/warp.txt index f779a64cfc42570fc8da61b15c0f19f4c43e3aec..6835deab1db5fffe51c506765381175e2eab841e 100644 --- a/ljubljana/subject09/warp.txt +++ b/ljubljana/subject09/warp.txt @@ -1,5 +1,5 @@ #Insight Transform File V1.0 #Transform 0 Transform: MatrixOffsetTransformBase_double_3_3 -Parameters: 1 0 0 0 1 0 0 0 1 238.07662963867188 21.018692016601562 -787.2677173912525 +Parameters: 1 0 0 0 1 0 0 0 1 234.2806208891887 -7.888425717408651 17.370554517854686 FixedParameters: 0 0 0 diff --git a/ljubljana/subject10/fiducials.pt b/ljubljana/subject10/fiducials.pt index 8c6b5f9cd95f7a9e761996b4a4b9ec1a9e7a602d..3e45bd0477230512af018027c3614afda3e56472 100644 Binary files a/ljubljana/subject10/fiducials.pt and b/ljubljana/subject10/fiducials.pt differ diff --git a/ljubljana/subject10/warp.txt b/ljubljana/subject10/warp.txt index f779a64cfc42570fc8da61b15c0f19f4c43e3aec..464a50dc2ac56ec876c36a56e49610521d93d97f 100644 --- a/ljubljana/subject10/warp.txt +++ b/ljubljana/subject10/warp.txt @@ -1,5 +1,5 @@ #Insight Transform File V1.0 #Transform 0 Transform: MatrixOffsetTransformBase_double_3_3 -Parameters: 1 0 0 0 1 0 0 0 1 238.07662963867188 21.018692016601562 -787.2677173912525 +Parameters: 0.9999999999999996 0 0 0 0.9579473840345573 -0.286943913372191 0 0.28694391337219094 0.957947384034557 231.71133016190439 -2.9224514379904476 15.761653862611944 FixedParameters: 0 0 0