import numpy as np import pytest import openpnm as op from openpnm.models import collections class BCTest: def setup_class(self): np.random.seed(0) self.pn = op.network.Cubic(shape=[3, 3, 1], spacing=1e-4) self.pn.add_model_collection(collections.geometry.cones_and_cylinders) self.pn.regenerate_models() self.air = op.phase.Air(network=self.pn, name="air") self.air.add_model_collection(collections.physics.standard) self.air.regenerate_models() def test_add(self): fd = op.algorithms.FickianDiffusion(network=self.pn, phase=self.air) fd.set_value_BC(pores=[0, 1, 2], values=3.0, mode='add') mask = np.isfinite(fd['pore.bc.value']) assert mask.sum() == 3 assert fd['pore.bc.value'][mask].sum() == 9.0 assert np.isfinite(fd['pore.bc.rate']).sum() == 0 with pytest.raises(Exception): fd.set_value_BC(pores=[2, 3], values=3.0, mode='add') with pytest.raises(Exception): fd.set_rate_BC(pores=[0, 1, 2], rates=3.0, mode='add') fd.set_value_BC(mode='remove') fd.set_rate_BC(pores=[0, 1, 2], rates=3.0, mode='add') mask = np.isfinite(fd['pore.bc.rate']) assert mask.sum() == 3 def test_overwrite(self): fd = op.algorithms.FickianDiffusion(network=self.pn, phase=self.air) fd['pore.bc.rate'][1] = 1.0 fd['pore.bc.value'][0] = 1.0 fd.set_value_BC(pores=[1, 2], values=3.0, mode='overwrite') mask = np.isfinite(fd['pore.bc.value']) assert mask.sum() == 3 assert fd['pore.bc.value'][mask].sum() == 7.0 assert np.isfinite(fd['pore.bc.rate']).sum() == 0 fd.set_rate_BC(pores=[0, 1, 2], rates=5.0, mode='overwrite') mask = np.isfinite(fd['pore.bc.rate']) assert mask.sum() == 3 assert fd['pore.bc.rate'][mask].sum() == 15.0 assert np.isfinite(fd['pore.bc.rate']).sum() == 3 assert np.isfinite(fd['pore.bc.value']).sum() == 0 # Mimic removal of all bcs fd['pore.bc.rate'][1] = 1.0 fd['pore.bc.value'][0] = 1.0 fd.set_BC(pores=None, bctype=[], bcvalues=np.nan, mode='overwrite') assert np.isfinite(fd['pore.bc.rate']).sum() == 0 assert np.isfinite(fd['pore.bc.value']).sum() == 0 def test_remove(self): fd = op.algorithms.FickianDiffusion(network=self.pn, phase=self.air) # Remove given type from given pores fd['pore.bc.rate'][1] = 1.0 fd['pore.bc.value'][0] = 1.0 fd.set_value_BC(pores=[0, 1], mode='remove') mask = np.isfinite(fd['pore.bc.value']) assert mask.sum() == 0 assert np.isfinite(fd['pore.bc.rate']).sum() == 1 # Remove given type from all pores fd['pore.bc.rate'][1] = 1.0 fd['pore.bc.value'][0] = 1.0 fd.set_BC(pores=None, bctype='rate', mode='remove') assert np.isfinite(fd['pore.bc.value']).sum() == 1 assert np.isfinite(fd['pore.bc.rate']).sum() == 0 # Remove all types from all pores fd['pore.bc.rate'][1] = 1.0 fd['pore.bc.value'][0] = 1.0 fd.set_BC(bctype=fd['pore.bc'].keys(), mode='remove') assert np.isfinite(fd['pore.bc.value']).sum() == 0 assert np.isfinite(fd['pore.bc.rate']).sum() == 0 # Remove all types from all pores given bctype is [] fd['pore.bc.rate'][1] = 1.0 fd['pore.bc.value'][0] = 1.0 fd.set_BC(mode='remove') assert np.isfinite(fd['pore.bc.value']).sum() == 0 assert np.isfinite(fd['pore.bc.rate']).sum() == 0 # Remove all types from given pores fd['pore.bc.rate'][1] = 1.0 fd['pore.bc.value'][0] = 1.0 fd.set_BC(pores=[0, 1], mode='remove') assert np.isfinite(fd['pore.bc.value']).sum() == 0 assert np.isfinite(fd['pore.bc.rate']).sum() == 0 def test_outflow(self): del self.air.models['throat.diffusive_conductance'] del self.air.models['throat.hydraulic_conductance'] self.air['throat.diffusive_conductance'] = 1e-15 self.air['throat.hydraulic_conductance'] = 1e-15 flow = op.algorithms.StokesFlow(network=self.pn, phase=self.air) flow.set_value_BC(pores=self.pn.pores('left'), values=1) flow.set_value_BC(pores=self.pn.pores('right'), values=0) flow.run() ad = op.algorithms.AdvectionDiffusion(network=self.pn, phase=self.air) ad.settings['cache'] = False ad.set_value_BC(pores=self.pn.pores('front'), values=1) ad.set_outflow_BC(pores=self.pn.pores('back'), mode='overwrite') ad.run() def test_inlets_and_outlets(self): nwp = op.phase.Phase(network=self.pn) nwp['throat.surface_tension'] = 0.480 nwp['throat.contact_angle'] = 140 nwp.add_model(propname='throat.entry_pressure', model=op.models.physics.capillary_pressure.washburn) nwp.add_model(propname='pore.entry_pressure', model=op.models.physics.capillary_pressure.washburn, contact_angle=140, surface_tension=0.480, diameter='pore.diameter') drn = op.algorithms.Drainage(network=self.pn, phase=nwp) drn.set_inlet_BC(pores=self.pn.pores('left')) pressures = np.logspace(np.log10(0.1e6), np.log10(8e6), 40) drn.run(pressures) drn.set_outlet_BC(pores=self.pn.pores('right')) drn.apply_trapping() def test_modes_as_list(self): # check mode clear, with and without force fd = op.algorithms.FickianDiffusion(network=self.pn, phase=self.air) fd['pore.bc.rate'][1] = 1.0 fd['pore.bc.value'][0] = 1.0 fd.set_BC(bctype=['value', 'rate'], mode='remove') assert np.isfinite(fd['pore.bc.value']).sum() == 0 assert np.isfinite(fd['pore.bc.rate']).sum() == 0 if __name__ == "__main__": t = BCTest() t.setup_class() self = t for item in t.__dir__(): if item.startswith("test"): print(f"Running test: {item}") t.__getattribute__(item)()