import pytest import numpy as np import openpnm as op import matplotlib.pyplot as plt from numpy.testing import assert_allclose class PlotToolsTest: def setup_class(self): self.ws = op.Workspace() def test_plot_tutorial(self): pn = op.network.Cubic(shape=[4, 4, 1]) # This runs locally, but fails on the CI due to a missing argument 's' # coming from within the networkx function, not ours. # op.visualization.plot_tutorial(pn) # plt.close() def test_plot_networkx_var_spacing(self): for i in range(3): shape = np.ones(3, dtype=int) shape[np.arange(3) != i] = [5, 8] spacing = np.ones(3, dtype=float) spacing[np.arange(3) != i] = [0.01, 0.6] pn = op.network.Cubic(shape=shape) dims = op.topotools.dimensionality(pn) x, y = pn["pore.coords"].T[dims] fig, ax = plt.subplots() m = op.visualization.plot_networkx(pn, ax=ax) x_plot, y_plot = np.array(m.get_offsets()).T np.testing.assert_allclose(x_plot, x) np.testing.assert_allclose(y_plot, y) plt.close() def test_plot_networkx(self): # 2D networks in XY, YZ, XZ planes for i in range(3): shape = np.ones(3, dtype=int) shape[np.arange(3) != i] = [5, 8] pn = op.network.Cubic(shape=shape) x, y = pn["pore.coords"].T[op.topotools.dimensionality(pn)] fig, ax = plt.subplots() m = op.visualization.plot_networkx(pn, ax=ax) x_plot, y_plot = np.array(m.get_offsets()).T np.testing.assert_allclose(x_plot, x) np.testing.assert_allclose(y_plot, y) plt.close() # 1D networks in XY, YZ, XZ planes for i in range(3): shape = np.ones(3, dtype=int) shape[np.arange(3) == i] = [5] pn = op.network.Cubic(shape=shape) x, = pn["pore.coords"].T[op.topotools.dimensionality(pn)] fig, ax = plt.subplots() m = op.visualization.plot_networkx(pn, ax=ax) x_plot, y_plot = np.array(m.get_offsets()).T np.testing.assert_allclose(x_plot, x) plt.close() def test_plot_networkx_3d(self): pn = op.network.Cubic(shape=[5, 8, 3]) with pytest.raises(Exception): op.visualization.plot_networkx(pn) def test_plot_connections_color_by(self): pn = op.network.Cubic(shape=[5, 5, 1]) np.random.seed(10) Ts = np.array([0, 4, 6, 18]) _ = op.visualization.plot_connections( pn, throats=Ts, color_by=np.random.rand(pn.Nt), ) def test_plot_coordinates_color_by(self): pn = op.network.Cubic(shape=[5, 5, 1]) np.random.seed(10) _ = op.visualization.plot_coordinates( pn, color_by=np.random.rand(pn.Np), ) def test_plot_connections_and_coordinates_color_by_3D(self): pn = op.network.Cubic(shape=[5, 5, 5]) np.random.seed(10) ax = op.visualization.plot_connections( pn, color_by=np.random.rand(pn.Nt), ) ax = op.visualization.plot_coordinates( pn, color_by=np.random.rand(pn.Np), ax=ax, ) def test_plot_connections_and_coordinates_color(self): pn = op.network.Cubic(shape=[5, 5, 1]) ax = op.visualization.plot_connections( network=pn, color='b', ) ax = op.visualization.plot_coordinates( network=pn, color='b', ax=ax, ) def test_3d(self): pn = op.network.Cubic(shape=[10, 10, 3]) pn['pore.internal'] = True pn.add_boundary_pores() Ps = pn.pores('internal') # find internal pores fig, ax = plt.subplots() # create empty figure ax = op.visualization.plot_coordinates( network=pn, pores=Ps, color='g', ax=ax, ) Ps = pn.pores('*boundary') # find boundary pores ax = op.visualization.plot_coordinates( network=pn, pores=Ps, color='r', ax=ax, ) if __name__ == '__main__': t = PlotToolsTest() self = t t.setup_class() for item in t.__dir__(): if item.startswith('test'): print(f'Running test: {item}') t.__getattribute__(item)()