"""Test libhpc.""" import os import pytest import pytest_mock # noqa : F401 from pathlib import Path from subprocess import CompletedProcess from haddock.libs.libhpc import ( HPCWorker, extract_slurm_status, JOB_STATUS_DIC, to_torque_time, ) from haddock.libs.libsubprocess import CNSJob def test_to_torque_time(): """Test minutes to HH:MM:SS cast.""" assert to_torque_time(10) == '00:10:00' assert to_torque_time(60) == '01:00:00' assert to_torque_time(70) == '01:10:00' assert to_torque_time(1510) == '25:10:00' assert to_torque_time(6070) == '101:10:00' @pytest.fixture def slurm_scontrol_terminated_jobid(): return """JobId=42909924 JobName=proabc2.job UserId=enmr(1095) GroupId=users(100) MCS_label=N/A Priority=1 Nice=0 Account=(null) QOS=normal JobState=RUNNING Reason=None Dependency=(null) Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0 DerivedExitCode=0:0 RunTime=00:00:01 TimeLimit=04:00:00 TimeMin=N/A SubmitTime=2023-10-17T10:03:01 EligibleTime=2023-10-17T10:03:01 AccrueTime=2023-10-17T10:03:01 StartTime=2023-10-17T10:03:02 EndTime=2023-10-17T14:03:02 Deadline=N/A PreemptTime=None SuspendTime=None SecsPreSuspend=0 LastSchedEval=2023-10-17T10:03:02 Partition=short AllocNode:Sid=bianca:124111 ReqNodeList=(null) ExcNodeList=(null) NodeList=node011 BatchHost=node011 NumNodes=1 NumCPUs=1 NumTasks=1 CPUs/Task=1 ReqB:S:C:T=0:0:*:* TRES=cpu=1,node=1,billing=1 Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=* Nodes=node011 CPU_IDs=4 Mem=0 GRES_IDX= MinCPUsNode=1 MinMemoryNode=0 MinTmpDiskNode=0 Features=(null) DelayBoot=00:00:00 OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null) Command=/trinity/home/enmr/csb_webserver/data/runs/proabc2/nAO_3OnarD4a/proabc2.job WorkDir=/trinity/home/enmr/csb_webserver/data/runs/proabc2 StdErr=/trinity/home/enmr/csb_webserver/data/runs/proabc2/nAO_3OnarD4a/proabc2.err StdIn=/dev/null StdOut=/trinity/home/enmr/csb_webserver/data/runs/proabc2/nAO_3OnarD4a/proabc2.out Power= """ def test_slurm_status(slurm_scontrol_terminated_jobid): status = extract_slurm_status(slurm_scontrol_terminated_jobid) assert status == 'RUNNING' assert JOB_STATUS_DIC[status] == 'running' @pytest.fixture def slurm_scontrol_wrongjobid(): return 'slurm_load_jobs error: Invalid job id specified' def test_slurm_nojobid(slurm_scontrol_wrongjobid): status = extract_slurm_status(slurm_scontrol_wrongjobid) assert status == 'FAILED' @pytest.fixture def hpcworker(mocker): """Instanciate a HPCWorker object.""" mocker.patch( "haddock.libs.libsubprocess.CNSJob.cns_exec", return_value=None, ) return HPCWorker( tasks=[ CNSJob( Path('rigidbody.inp'), Path('rigidbody.out'), envvars={ 'MODDIR': '.', 'TOPPAR': 'topology_params', 'MODULE': 'rigidbody', }, cns_exec=None, ), ], num=1, job_id=123456789, workfload_manager='slurm', queue=10, ) def test_hpcworker_run(hpcworker, mocker): """Test the `run` function of a HPCWorker object.""" mocker.patch( "subprocess.run", return_value=CompletedProcess( args=['sbatch', str(hpcworker.job_fname)], returncode=0, stdout=b'Submitted batch job 42914957', stderr=b'', ) ) hpcworker.run() assert os.path.exists(hpcworker.job_fname) os.remove(hpcworker.job_fname) assert hpcworker.job_id == 42914957 assert hpcworker.job_status == 'submitted' def test_hpcworker_update_status( hpcworker, slurm_scontrol_terminated_jobid, mocker, ): """Test `update_status` function.""" mocker.patch( "subprocess.run", return_value=CompletedProcess( args=['scontrol', 'show', 'jobid', '-dd', '42909924'], returncode=0, stdout=bytes(slurm_scontrol_terminated_jobid, 'utf-8'), stderr=b'', ) ) status = hpcworker.update_status() assert status == hpcworker.job_status assert status == 'running'