diff --git a/pfam_gap_rates/5_3_exonuc.gap.json b/pfam_gap_rates/5_3_exonuc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..da82445b46d0dc4b2b83c2d795b8c2b90947e781
--- /dev/null
+++ b/pfam_gap_rates/5_3_exonuc.gap.json
@@ -0,0 +1 @@
+{"family": "5_3_exonuc", "n_seqs": 2678, "length": 104, "gap_rates": [0.42867811799850636, 0.16878267363704258, 0.08401792382374906, 0.05003734129947722, 0.030246452576549662, 0.017923823749066467, 0.01568334578043316, 0.013816280806572068, 0.0074682598954443615, 0.005227781926811053, 0.0048543689320388345, 0.004480955937266617, 0.004107542942494399, 0.004107542942494399, 0.004107542942494399, 0.004107542942494399, 0.0037341299477221808, 0.002987303958177745, 0.0022404779686333084, 0.0022404779686333084, 0.0022404779686333084, 0.0026138909634055266, 0.0026138909634055266, 0.0014936519790888724, 0.0007468259895444362, 0.0007468259895444362, 0.0011202389843166542, 0.0003734129947722181, 0.0033607169529499626, 0.0003734129947722181, 0.0003734129947722181, 0.0003734129947722181, 0.0003734129947722181, 0.0, 0.0, 0.0, 0.0, 0.0003734129947722181, 0.0003734129947722181, 0.0003734129947722181, 0.0011202389843166542, 0.0011202389843166542, 0.0014936519790888724, 0.0014936519790888724, 0.0014936519790888724, 0.0014936519790888724, 0.008588498879761016, 0.006348020911127707, 0.004480955937266617, 0.909260642270351, 0.8973114264376401, 0.012696041822255415, 0.0268857356235997, 0.02389843166542196, 0.10679611650485436, 0.8607169529499626, 0.8935772964899178, 0.9118745332337566, 0.9032860343539956, 0.8737864077669902, 0.8495145631067961, 0.38237490664675133, 0.008215085884988798, 0.006348020911127707, 0.006348020911127707, 0.007094846900672144, 0.00784167289021658, 0.00784167289021658, 0.008215085884988798, 0.00784167289021658, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009335324869305451, 0.010828976848394324, 0.011202389843166542, 0.011202389843166542, 0.011202389843166542, 0.01157580283793876, 0.01194921583271098, 0.01194921583271098, 0.01194921583271098, 0.013069454817027632, 0.01344286781179985, 0.01568334578043316, 0.022404779686333084, 0.02389843166542196, 0.026138909634055265, 0.026512322628827484, 0.03472740851381628, 0.039208364451082896, 0.08849887976101568, 0.08737864077669903, 0.10306198655713218, 0.12285287528005974, 0.1430171769977595, 0.17513069454817026, 0.20238984316654218, 0.2296489917849141, 0.2826736370425691, 0.35287528005974605, 0.44100074682598955, 0.5212845407020165, 0.7830470500373413], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ABG_transport.gap.json b/pfam_gap_rates/ABG_transport.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb4764554a73b39560f7dd7956864e13401dc286
--- /dev/null
+++ b/pfam_gap_rates/ABG_transport.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ADH_N_2.gap.json b/pfam_gap_rates/ADH_N_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a5e1b7fe625e7da449040038830fdc43e6fe028
--- /dev/null
+++ b/pfam_gap_rates/ADH_N_2.gap.json
@@ -0,0 +1 @@
+{"family": "ADH_N_2", "n_seqs": 1449, "length": 118, "gap_rates": [0.4968944099378882, 0.3105590062111801, 0.21739130434782608, 0.19806763285024154, 0.18702553485162182, 0.17805383022774326, 0.1746031746031746, 0.17391304347826086, 0.17184265010351968, 0.16494133885438234, 0.1601104209799862, 0.15113871635610765, 0.14699792960662525, 0.13595583160800553, 0.12560386473429952, 0.12146307798481712, 0.11801242236024845, 0.11594202898550725, 0.11594202898550725, 0.11525189786059352, 0.1111111111111111, 0.11042097998619738, 0.10973084886128365, 0.10628019323671498, 0.0986887508626639, 0.0904071773636991, 0.8474810213940649, 0.8750862663906143, 0.7101449275362319, 0.07453416149068323, 0.05659075224292615, 0.049689440993788817, 0.031055900621118012, 0.028985507246376812, 0.917184265010352, 0.911663216011042, 0.028295376121463076, 0.024154589371980676, 0.023464458247066944, 0.022084195997239476, 0.020703933747412008, 0.020703933747412008, 0.020703933747412008, 0.020703933747412008, 0.020703933747412008, 0.020703933747412008, 0.020703933747412008, 0.020703933747412008, 0.02139406487232574, 0.02139406487232574, 0.01725327812284334, 0.017943409247757072, 0.017943409247757072, 0.018633540372670808, 0.022084195997239476, 0.03450655624568668, 0.9440993788819876, 0.03657694962042788, 0.8778467908902692, 0.8412698412698413, 0.04071773636991028, 0.9158040027605245, 0.8992408557625949, 0.047619047619047616, 0.051759834368530024, 0.12836438923395446, 0.12077294685990338, 0.11456176673567978, 0.10144927536231885, 0.09316770186335403, 0.08350586611456176, 0.06418219461697723, 0.024154589371980676, 0.022774327122153208, 0.025534851621808144, 0.026224982746721876, 0.023464458247066944, 0.023464458247066944, 0.023464458247066944, 0.022774327122153208, 0.022774327122153208, 0.023464458247066944, 0.023464458247066944, 0.022774327122153208, 0.022774327122153208, 0.023464458247066944, 0.024154589371980676, 0.029675638371290544, 0.024844720496894408, 0.026224982746721876, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.025534851621808144, 0.027605244996549344, 0.027605244996549344, 0.028295376121463076, 0.029675638371290544, 0.029675638371290544, 0.031746031746031744, 0.031055900621118012, 0.033816425120772944, 0.039337474120082816, 0.04209799861973775, 0.04209799861973775, 0.04278812974465148, 0.043478260869565216, 0.045548654244306416, 0.049689440993788817, 0.05521048999309869, 0.07660455486542443, 0.12146307798481712, 0.22705314009661837, 0.30917874396135264, 0.4051069703243616, 0.5065562456866805, 0.6307798481711525, 0.8164251207729468], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ADH_N_assoc.gap.json b/pfam_gap_rates/ADH_N_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..604977519b5c5f7aa5f21c848836725a50a22a4c
--- /dev/null
+++ b/pfam_gap_rates/ADH_N_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "ADH_N_assoc", "n_seqs": 625, "length": 23, "gap_rates": [0.0064, 0.0032, 0.0032, 0.0032, 0.0016, 0.0016, 0.0016, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0032, 0.0032, 0.0208, 0.024, 0.04, 0.0688, 0.3488], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AHH.gap.json b/pfam_gap_rates/AHH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b8d97c1dd578b803806a61972602149ff6f7cde
--- /dev/null
+++ b/pfam_gap_rates/AHH.gap.json
@@ -0,0 +1 @@
+{"family": "AHH", "n_seqs": 120, "length": 161, "gap_rates": [0.9083333333333333, 0.7416666666666667, 0.6416666666666667, 0.5833333333333334, 0.5333333333333333, 0.4666666666666667, 0.425, 0.38333333333333336, 0.2916666666666667, 0.23333333333333334, 0.19166666666666668, 0.15, 0.10833333333333334, 0.08333333333333333, 0.05, 0.05, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.10833333333333334, 0.1, 0.1, 0.15833333333333333, 0.2916666666666667, 0.4583333333333333, 0.5833333333333334, 0.6416666666666667, 0.6833333333333333, 0.925, 0.8916666666666667, 0.6833333333333333, 0.6166666666666667, 0.575, 0.041666666666666664, 0.041666666666666664, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.025, 0.03333333333333333, 0.03333333333333333, 0.95, 0.95, 0.9083333333333333, 0.025, 0.016666666666666666, 0.025, 0.016666666666666666, 0.008333333333333333, 0.0, 0.0, 0.0, 0.0, 0.0, 0.3, 0.725, 0.7916666666666666, 0.825, 0.8416666666666667, 0.8583333333333333, 0.875, 0.9416666666666667, 0.9416666666666667, 0.9416666666666667, 0.95, 0.95, 0.95, 0.95, 0.95, 0.95, 0.9416666666666667, 0.9416666666666667, 0.9416666666666667, 0.8833333333333333, 0.875, 0.8583333333333333, 0.8333333333333334, 0.825, 0.775, 0.7083333333333334, 0.48333333333333334, 0.45, 0.4083333333333333, 0.4, 0.39166666666666666, 0.39166666666666666, 0.39166666666666666, 0.39166666666666666, 0.39166666666666666, 0.3416666666666667, 0.3333333333333333, 0.15833333333333333, 0.08333333333333333, 0.025, 0.016666666666666666, 0.016666666666666666, 0.075, 0.95, 0.95, 0.95, 0.016666666666666666, 0.9083333333333333, 0.9333333333333333, 0.95, 0.95, 0.9166666666666666, 0.9083333333333333, 0.375, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.025, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.06666666666666667, 0.05, 0.05, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.08333333333333333, 0.13333333333333333, 0.15, 0.175, 0.18333333333333332, 0.225, 0.36666666666666664, 0.4166666666666667, 0.43333333333333335, 0.45, 0.475, 0.49166666666666664, 0.5333333333333333, 0.5333333333333333, 0.9333333333333333, 0.95, 0.95, 0.9083333333333333, 0.44166666666666665, 0.475, 0.5166666666666667, 0.5833333333333334, 0.6083333333333333, 0.6833333333333333, 0.75, 0.85], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AOX.gap.json b/pfam_gap_rates/AOX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b56a46a43fe5dd77d47853493f247acf24c2ec0
--- /dev/null
+++ b/pfam_gap_rates/AOX.gap.json
@@ -0,0 +1 @@
+{"family": "AOX", "n_seqs": 464, "length": 259, "gap_rates": [0.7952586206896551, 0.6810344827586207, 0.6357758620689655, 0.603448275862069, 0.5905172413793104, 0.5797413793103449, 0.5560344827586207, 0.5517241379310345, 0.5258620689655172, 0.5129310344827587, 0.4331896551724138, 0.29310344827586204, 0.28663793103448276, 0.2823275862068966, 0.27586206896551724, 0.27155172413793105, 0.26939655172413796, 0.26939655172413796, 0.2650862068965517, 0.2543103448275862, 0.25, 0.2478448275862069, 0.2478448275862069, 0.24568965517241378, 0.2413793103448276, 0.2413793103448276, 0.23275862068965517, 0.22629310344827586, 0.22413793103448276, 0.22198275862068967, 0.20905172413793102, 0.20905172413793102, 0.20043103448275862, 0.1875, 0.1788793103448276, 0.16594827586206898, 0.16163793103448276, 0.16379310344827586, 0.16379310344827586, 0.15732758620689655, 0.15948275862068967, 0.6982758620689655, 0.7327586206896551, 0.7456896551724138, 0.7586206896551724, 0.771551724137931, 0.7952586206896551, 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\ No newline at end of file
diff --git a/pfam_gap_rates/ASL_C2.gap.json b/pfam_gap_rates/ASL_C2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d2e65ea3eecab94b623ef391587d662d383bd6ca
--- /dev/null
+++ b/pfam_gap_rates/ASL_C2.gap.json
@@ -0,0 +1 @@
+{"family": "ASL_C2", "n_seqs": 1777, "length": 78, "gap_rates": [0.2217220033764772, 0.10748452447945976, 0.029825548677546426, 0.020258863252673044, 0.019696117051209903, 0.0061902082160945416, 0.0061902082160945416, 0.005627462014631401, 0.0033764772087788407, 0.0033764772087788407, 0.0028137310073157004, 0.004501969611705121, 0.005064715813168261, 0.004501969611705121, 0.8137310073157006, 0.0028137310073157004, 0.0016882386043894203, 0.0011254924029262803, 0.0016882386043894203, 0.0016882386043894203, 0.0016882386043894203, 0.0016882386043894203, 0.0016882386043894203, 0.0011254924029262803, 0.0005627462014631402, 0.0011254924029262803, 0.0011254924029262803, 0.0011254924029262803, 0.0011254924029262803, 0.0016882386043894203, 0.0016882386043894203, 0.0028137310073157004, 0.015756893640967922, 0.018570624648283626, 0.015756893640967922, 0.013505908835115363, 0.011817670230725942, 0.014068655036578503, 0.013505908835115363, 0.014631401238041642, 0.013505908835115363, 0.011254924029262802, 0.011817670230725942, 0.015756893640967922, 0.016882386043894203, 0.016319639842431063, 0.016319639842431063, 0.016882386043894203, 0.017445132245357344, 0.029262802476083285, 0.028700056274620148, 0.025886325267304444, 0.9279684862127181, 0.9324704558244232, 0.9414743950478335, 0.9341586944288126, 0.9290939786156444, 0.9268429938097917, 0.026449071468767585, 0.025323579065841307, 0.9262802476083286, 0.023635340461451885, 0.024760832864378166, 0.9015194147439505, 0.028700056274620148, 0.026449071468767585, 0.030388294879009566, 0.028700056274620148, 0.032076533483398985, 0.033202025886325266, 0.03376477208778841, 0.03545301069217783, 0.03657850309510411, 0.03995498030388295, 0.04783342712436691, 0.06527855936972425, 0.11367473269555431, 0.47945976364659537], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATG13.gap.json b/pfam_gap_rates/ATG13.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..79c758dd844fd6813c568d04b870f6066e0ef783
--- /dev/null
+++ b/pfam_gap_rates/ATG13.gap.json
@@ -0,0 +1 @@
+{"family": "ATG13", "n_seqs": 288, "length": 296, "gap_rates": [0.5763888888888888, 0.4861111111111111, 0.4270833333333333, 0.4201388888888889, 0.4201388888888889, 0.4131944444444444, 0.4027777777777778, 0.4027777777777778, 0.4027777777777778, 0.4027777777777778, 0.4027777777777778, 0.3958333333333333, 0.3958333333333333, 0.3958333333333333, 0.3958333333333333, 0.3958333333333333, 0.3958333333333333, 0.3958333333333333, 0.5590277777777778, 0.7326388888888888, 0.7673611111111112, 0.7881944444444444, 0.8055555555555556, 0.8333333333333334, 0.875, 0.8958333333333334, 0.9131944444444444, 0.90625, 0.8854166666666666, 0.8715277777777778, 0.8229166666666666, 0.7881944444444444, 0.78125, 0.7534722222222222, 0.6631944444444444, 0.5416666666666666, 0.4965277777777778, 0.5138888888888888, 0.4548611111111111, 0.4097222222222222, 0.4027777777777778, 0.3923611111111111, 0.3923611111111111, 0.3888888888888889, 0.3854166666666667, 0.3854166666666667, 0.3819444444444444, 0.3819444444444444, 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\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-synt_DE_N.gap.json b/pfam_gap_rates/ATP-synt_DE_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d80f80fd423521d9246296025185adfaaa8c2e5
--- /dev/null
+++ b/pfam_gap_rates/ATP-synt_DE_N.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-synt_DE_N", "n_seqs": 2428, "length": 83, "gap_rates": [0.3447281713344316, 0.1387973640856672, 0.06466227347611203, 0.05848434925864909, 0.05518945634266886, 0.051070840197693576, 0.0457166392092257, 0.04159802306425041, 0.03830313014827018, 0.03459637561779242, 0.03377265238879736, 0.03088962108731466, 0.026359143327841845, 0.025535420098846788, 0.026771004942339374, 0.01729818780889621, 0.8422570016474464, 0.012767710049423394, 0.01029654036243822, 0.007413509060955519, 0.00700164744645799, 0.00700164744645799, 0.00700164744645799, 0.00700164744645799, 0.006589785831960461, 0.006177924217462933, 0.0032948929159802307, 0.002883031301482702, 0.002883031301482702, 0.002883031301482702, 0.002883031301482702, 0.002883031301482702, 0.002471169686985173, 0.002471169686985173, 0.002883031301482702, 0.002883031301482702, 0.002883031301482702, 0.002471169686985173, 0.002471169686985173, 0.002059308072487644, 0.002059308072487644, 0.002059308072487644, 0.002471169686985173, 0.0037067545304777594, 0.004942339373970346, 0.004942339373970346, 0.0037067545304777594, 0.0037067545304777594, 0.004118616144975288, 0.004118616144975288, 0.004530477759472817, 0.34596375617792424, 0.025947281713344317, 0.009060955518945634, 0.9015650741350906, 0.014415156507413509, 0.011120263591433279, 0.01029654036243822, 0.008237232289950576, 0.009060955518945634, 0.009060955518945634, 0.01070840197693575, 0.01070840197693575, 0.011532125205930808, 0.011943986820428337, 0.012355848434925865, 0.012355848434925865, 0.012355848434925865, 0.01400329489291598, 0.015238879736408566, 0.016474464579901153, 0.9089785831960461, 0.0214168039538715, 0.025535420098846788, 0.044892915980230645, 0.06589785831960461, 0.08401976935749589, 0.09596375617792421, 0.11079077429983525, 0.14044481054365734, 0.17833607907743, 0.2598846787479407, 0.3978583196046129], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATPgrasp_ST.gap.json b/pfam_gap_rates/ATPgrasp_ST.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9cbe3d53d30cb7bd58f916e327be1a7d6a8073e6
--- /dev/null
+++ b/pfam_gap_rates/ATPgrasp_ST.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ATPgrasp_TupA.gap.json b/pfam_gap_rates/ATPgrasp_TupA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f192a511107e43ad0e65eab9ef684aa7a9293b21
--- /dev/null
+++ b/pfam_gap_rates/ATPgrasp_TupA.gap.json
@@ -0,0 +1 @@
+{"family": "ATPgrasp_TupA", "n_seqs": 188, "length": 255, "gap_rates": [0.44680851063829785, 0.3670212765957447, 0.3351063829787234, 0.3351063829787234, 0.324468085106383, 0.31382978723404253, 0.30851063829787234, 0.30319148936170215, 0.30319148936170215, 0.9361702127659575, 0.9308510638297872, 0.2925531914893617, 0.2925531914893617, 0.2765957446808511, 0.25, 0.25, 0.23404255319148937, 0.22872340425531915, 0.21808510638297873, 0.20212765957446807, 0.20212765957446807, 0.20212765957446807, 0.19680851063829788, 0.19680851063829788, 0.19680851063829788, 0.19680851063829788, 0.19680851063829788, 0.19680851063829788, 0.19680851063829788, 0.19680851063829788, 0.19680851063829788, 0.2074468085106383, 0.19680851063829788, 0.2127659574468085, 0.31382978723404253, 0.26595744680851063, 0.26595744680851063, 0.19680851063829788, 0.18617021276595744, 0.18617021276595744, 0.18617021276595744, 0.18617021276595744, 0.18617021276595744, 0.17553191489361702, 0.1702127659574468, 0.16489361702127658, 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\ No newline at end of file
diff --git a/pfam_gap_rates/AXH.gap.json b/pfam_gap_rates/AXH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f04a5e0be78678c91b5c28d806856d7b94d7072c
--- /dev/null
+++ b/pfam_gap_rates/AXH.gap.json
@@ -0,0 +1 @@
+{"family": "AXH", "n_seqs": 120, "length": 147, "gap_rates": [0.125, 0.10833333333333334, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.075, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.075, 0.85, 0.85, 0.8333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.041666666666666664, 0.041666666666666664, 0.8166666666666667, 0.8166666666666667, 0.8166666666666667, 0.8166666666666667, 0.85, 0.925, 0.825, 0.8166666666666667, 0.8166666666666667, 0.8166666666666667, 0.8166666666666667, 0.041666666666666664, 0.05, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.9416666666666667, 0.058333333333333334, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.05, 0.05, 0.05, 0.05, 0.26666666666666666, 0.31666666666666665, 0.3, 0.275, 0.275, 0.6, 0.575, 0.95, 0.95, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.05, 0.05, 0.05, 0.041666666666666664, 0.041666666666666664, 0.05, 0.9166666666666666, 0.9166666666666666, 0.9166666666666666, 0.9166666666666666, 0.925, 0.925, 0.95, 0.95, 0.925, 0.925, 0.9166666666666666, 0.9166666666666666, 0.9166666666666666, 0.7333333333333333, 0.058333333333333334, 0.05, 0.058333333333333334, 0.08333333333333333, 0.075, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.06666666666666667, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.06666666666666667, 0.06666666666666667, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.06666666666666667, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.06666666666666667, 0.06666666666666667, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.06666666666666667, 0.075, 0.06666666666666667, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.1, 0.125, 0.375, 0.7333333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Abhydrolase_9_N.gap.json b/pfam_gap_rates/Abhydrolase_9_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec6ca3130531147b3fdbdd8551f05d7f2618ac13
--- /dev/null
+++ b/pfam_gap_rates/Abhydrolase_9_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AceK.gap.json b/pfam_gap_rates/AceK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ced3c516e55fde7c1acf463cc1e2ee113f1939a
--- /dev/null
+++ b/pfam_gap_rates/AceK.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Aconitase_C.gap.json b/pfam_gap_rates/Aconitase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37b58af07cb12192e4fff10abc577549de942f3e
--- /dev/null
+++ b/pfam_gap_rates/Aconitase_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AdoMet_Synthase.gap.json b/pfam_gap_rates/AdoMet_Synthase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7d55aee13d75c3dab2e035d8490bf21ca275ab2e
--- /dev/null
+++ b/pfam_gap_rates/AdoMet_Synthase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Afi1.gap.json b/pfam_gap_rates/Afi1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3fd2619aa81c486f03891985524af4a5e235c303
--- /dev/null
+++ b/pfam_gap_rates/Afi1.gap.json
@@ -0,0 +1 @@
+{"family": "Afi1", "n_seqs": 149, "length": 162, "gap_rates": [0.20134228187919462, 0.087248322147651, 0.06711409395973154, 0.06040268456375839, 0.053691275167785234, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.053691275167785234, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.040268456375838924, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.06711409395973154, 0.053691275167785234, 0.03355704697986577, 0.912751677852349, 0.9261744966442953, 0.9395973154362416, 0.9463087248322147, 0.9328859060402684, 0.9261744966442953, 0.8523489932885906, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.8657718120805369, 0.8187919463087249, 0.020134228187919462, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.020134228187919462, 0.026845637583892617, 0.026845637583892617, 0.03355704697986577, 0.04697986577181208, 0.087248322147651, 0.19463087248322147, 0.20134228187919462, 0.22818791946308725, 0.2550335570469799, 0.26174496644295303, 0.2550335570469799, 0.26174496644295303, 0.28859060402684567, 0.3288590604026846, 0.38926174496644295, 0.3825503355704698, 0.37583892617449666, 0.3959731543624161, 0.4161073825503356, 0.42953020134228187, 0.42953020134228187, 0.44966442953020136, 0.4563758389261745, 0.4697986577181208, 0.4899328859060403, 0.5033557046979866, 0.4966442953020134, 0.47651006711409394, 0.48322147651006714, 0.5033557046979866, 0.46308724832214765, 0.7516778523489933, 0.7583892617449665, 0.7919463087248322, 0.825503355704698, 0.8859060402684564, 0.9060402684563759, 0.9328859060402684, 0.9395973154362416, 0.9463087248322147, 0.9395973154362416, 0.9395973154362416, 0.9194630872483222, 0.8993288590604027, 0.8657718120805369, 0.8053691275167785, 0.7583892617449665, 0.7583892617449665, 0.7449664429530202, 0.5234899328859061, 0.5637583892617449, 0.5369127516778524, 0.5369127516778524, 0.5100671140939598, 0.4966442953020134, 0.4966442953020134, 0.48322147651006714, 0.47651006711409394, 0.4697986577181208, 0.46308724832214765, 0.46308724832214765, 0.4966442953020134, 0.47651006711409394, 0.4697986577181208, 0.4697986577181208, 0.47651006711409394, 0.47651006711409394, 0.4966442953020134, 0.5369127516778524, 0.5570469798657718, 0.8859060402684564, 0.9463087248322147, 0.7986577181208053, 0.6040268456375839, 0.5302013422818792, 0.5302013422818792, 0.5234899328859061, 0.4899328859060403, 0.5503355704697986, 0.5234899328859061, 0.5033557046979866, 0.7785234899328859, 0.48322147651006714, 0.48322147651006714, 0.48322147651006714, 0.4899328859060403, 0.4899328859060403, 0.4966442953020134, 0.4899328859060403, 0.4899328859060403, 0.48322147651006714, 0.48322147651006714, 0.48322147651006714, 0.48322147651006714, 0.48322147651006714, 0.4899328859060403, 0.4966442953020134, 0.4966442953020134, 0.4966442953020134, 0.4966442953020134, 0.5033557046979866, 0.5033557046979866, 0.5302013422818792, 0.6711409395973155], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Aha1_N.gap.json b/pfam_gap_rates/Aha1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2a76575a58d10370a95eebcb0a0d46b5958052ad
--- /dev/null
+++ b/pfam_gap_rates/Aha1_N.gap.json
@@ -0,0 +1 @@
+{"family": "Aha1_N", "n_seqs": 484, "length": 162, "gap_rates": [0.18181818181818182, 0.11363636363636363, 0.08264462809917356, 0.07851239669421488, 0.07231404958677685, 0.05785123966942149, 0.05785123966942149, 0.05785123966942149, 0.05165289256198347, 0.049586776859504134, 0.049586776859504134, 0.047520661157024795, 0.047520661157024795, 0.045454545454545456, 0.045454545454545456, 0.04132231404958678, 0.04132231404958678, 0.07851239669421488, 0.06611570247933884, 0.05578512396694215, 0.05371900826446281, 0.05165289256198347, 0.047520661157024795, 0.07231404958677685, 0.7830578512396694, 0.05785123966942149, 0.05785123966942149, 0.05785123966942149, 0.7789256198347108, 0.9008264462809917, 0.9235537190082644, 0.9442148760330579, 0.9462809917355371, 0.9442148760330579, 0.9318181818181818, 0.9070247933884298, 0.8822314049586777, 0.7541322314049587, 0.0371900826446281, 0.03512396694214876, 0.03512396694214876, 0.03305785123966942, 0.030991735537190084, 0.049586776859504134, 0.047520661157024795, 0.030991735537190084, 0.026859504132231406, 0.026859504132231406, 0.028925619834710745, 0.028925619834710745, 0.024793388429752067, 0.028925619834710745, 0.026859504132231406, 0.028925619834710745, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.028925619834710745, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.022727272727272728, 0.022727272727272728, 0.7066115702479339, 0.8512396694214877, 0.9256198347107438, 0.9359504132231405, 0.9483471074380165, 0.9421487603305785, 0.9297520661157025, 0.9173553719008265, 0.8264462809917356, 0.6921487603305785, 0.36363636363636365, 0.8512396694214877, 0.18801652892561985, 0.16322314049586778, 0.09090909090909091, 0.07644628099173553, 0.05991735537190083, 0.05371900826446281, 0.03925619834710744, 0.030991735537190084, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01859504132231405, 0.01859504132231405, 0.024793388429752067, 0.022727272727272728, 0.02066115702479339, 0.03925619834710744, 0.030991735537190084, 0.03512396694214876, 0.8429752066115702, 0.06818181818181818, 0.09297520661157024, 0.07024793388429752, 0.08677685950413223, 0.9276859504132231, 0.9194214876033058, 0.05165289256198347, 0.04338842975206612, 0.05991735537190083, 0.09917355371900827, 0.09297520661157024, 0.07024793388429752, 0.06198347107438017, 0.05991735537190083, 0.06198347107438017, 0.07644628099173553, 0.9028925619834711, 0.8760330578512396, 0.1859504132231405, 0.7128099173553719, 0.5971074380165289, 0.13016528925619836, 0.12190082644628099, 0.10537190082644628, 0.1012396694214876, 0.1384297520661157, 0.08264462809917356, 0.07851239669421488, 0.07644628099173553, 0.07644628099173553, 0.07644628099173553, 0.07644628099173553, 0.11363636363636363, 0.08884297520661157, 0.1322314049586777, 0.09090909090909091, 0.08884297520661157, 0.09090909090909091, 0.08884297520661157, 0.09090909090909091, 0.09090909090909091, 0.09297520661157024, 0.09504132231404959, 0.09710743801652892, 0.09917355371900827, 0.09917355371900827, 0.10537190082644628, 0.1115702479338843, 0.11570247933884298, 0.12603305785123967, 0.1384297520661157, 0.20867768595041322, 0.378099173553719, 0.512396694214876, 0.5991735537190083], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Alpha_adaptin_C.gap.json b/pfam_gap_rates/Alpha_adaptin_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b914b657c5d2e75604964433c9ad65ae782c25d5
--- /dev/null
+++ b/pfam_gap_rates/Alpha_adaptin_C.gap.json
@@ -0,0 +1 @@
+{"family": "Alpha_adaptin_C", "n_seqs": 301, "length": 123, "gap_rates": [0.11627906976744186, 0.11295681063122924, 0.10299003322259136, 0.08305647840531562, 0.059800664451827246, 0.05647840531561462, 0.053156146179401995, 0.03986710963455149, 0.03986710963455149, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.029900332225913623, 0.046511627906976744, 0.07308970099667775, 0.03986710963455149, 0.029900332225913623, 0.046511627906976744, 0.029900332225913623, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.5647840531561462, 0.5681063122923588, 0.8637873754152824, 0.9003322259136213, 0.7541528239202658, 0.6146179401993356, 0.06312292358803986, 0.036544850498338874, 0.036544850498338874, 0.023255813953488372, 0.016611295681063124, 0.016611295681063124, 0.016611295681063124, 0.009966777408637873, 0.016611295681063124, 0.019933554817275746, 0.023255813953488372, 0.026578073089700997, 0.016611295681063124, 0.016611295681063124, 0.9368770764119602, 0.016611295681063124, 0.019933554817275746, 0.019933554817275746, 0.013289036544850499, 0.009966777408637873, 0.009966777408637873, 0.009966777408637873, 0.036544850498338874, 0.023255813953488372, 0.013289036544850499, 0.006644518272425249, 0.006644518272425249, 0.019933554817275746, 0.006644518272425249, 0.009966777408637873, 0.009966777408637873, 0.006644518272425249, 0.006644518272425249, 0.006644518272425249, 0.006644518272425249, 0.006644518272425249, 0.006644518272425249, 0.006644518272425249, 0.006644518272425249, 0.006644518272425249, 0.006644518272425249, 0.009966777408637873, 0.49169435215946844, 0.036544850498338874, 0.023255813953488372, 0.023255813953488372, 0.9302325581395349, 0.9435215946843853, 0.946843853820598, 0.9302325581395349, 0.9235880398671097, 0.023255813953488372, 0.019933554817275746, 0.019933554817275746, 0.019933554817275746, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.046511627906976744, 0.9003322259136213, 0.046511627906976744, 0.04318936877076412, 0.029900332225913623, 0.03322259136212625, 0.03322259136212625, 0.03986710963455149, 0.03986710963455149, 0.03986710963455149, 0.03986710963455149, 0.04983388704318937, 0.05647840531561462, 0.05647840531561462, 0.05647840531561462, 0.06312292358803986, 0.06312292358803986, 0.06312292358803986, 0.0664451827242525, 0.06976744186046512, 0.07973421926910298, 0.09634551495016612, 0.14285714285714285, 0.3388704318936877, 0.7641196013289037], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Amidohydro_2.gap.json b/pfam_gap_rates/Amidohydro_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..717607507b45a03d9f745780741f784080f9b08f
--- /dev/null
+++ b/pfam_gap_rates/Amidohydro_2.gap.json
@@ -0,0 +1 @@
+{"family": "Amidohydro_2", "n_seqs": 3995, "length": 396, "gap_rates": [0.5602002503128911, 0.4755944931163955, 0.47284105131414267, 0.4708385481852315, 0.46983729662077595, 0.4688360450563204, 0.5216520650813516, 0.5549436795994994, 0.572215269086358, 0.6768460575719649, 0.6770963704630788, 0.7091364205256571, 0.6823529411764706, 0.7246558197747184, 0.7639549436795995, 0.7904881101376721, 0.8045056320400501, 0.8242803504380476, 0.8377972465581978, 0.8433041301627033, 0.8590738423028786, 0.8678347934918649, 0.8738423028785982, 0.8783479349186483, 0.8888610763454318, 0.9078848560700876, 0.9161451814768461, 0.9454317897371715, 0.9244055068836045, 0.9126408010012516, 0.9028785982478098, 0.8851063829787233, 0.8753441802252816, 0.872090112640801, 0.8625782227784731, 0.8495619524405507, 0.8397997496871089, 0.8330413016270338, 0.8137672090112641, 0.7942428035043805, 0.7769712140175219, 0.7444305381727159, 0.7186483103879849, 0.6678347934918648, 0.6615769712140175, 0.6403003754693367, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Annexin.gap.json b/pfam_gap_rates/Annexin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..11f48c756dcde842bc5f579c3a022cbe796edc61
--- /dev/null
+++ b/pfam_gap_rates/Annexin.gap.json
@@ -0,0 +1 @@
+{"family": "Annexin", "n_seqs": 4114, "length": 67, "gap_rates": [0.6531356344190569, 0.2897423432182791, 0.18206125425376762, 0.15192027224112786, 0.8492950899368011, 0.11910549343704424, 0.10865337870685464, 0.10379192999513855, 0.09917355371900827, 0.0962566844919786, 0.08629071463296062, 0.07826932425862908, 0.0743801652892562, 0.07802625182304326, 0.06635877491492465, 0.0583373845405931, 0.04691298006806028, 0.037919299951385516, 0.032814778804083615, 0.027953330092367525, 0.02333495381623724, 0.021876519202722412, 0.02066115702479339, 0.019931939718035974, 0.01968886728245017, 0.01871657754010695, 0.020175012153621778, 0.01871657754010695, 0.017258142926592123, 0.015799708313077296, 0.01434127369956247, 0.019445794846864366, 0.01166747690811862, 0.010452114730189596, 0.009236752552260573, 0.007778317938745746, 0.008021390374331552, 0.009236752552260573, 0.009236752552260573, 0.009236752552260573, 0.009236752552260573, 0.0106951871657754, 0.01434127369956247, 0.015070491006319884, 0.017744287797763734, 0.019931939718035974, 0.0213903743315508, 0.02333495381623724, 0.02600875060768109, 0.02868254739912494, 0.031113271754982984, 0.03330092367525522, 0.040106951871657755, 0.052989790957705396, 0.06003889158969373, 0.07097715119105494, 0.07632474477394263, 0.08701993193971803, 0.09261059795819154, 0.09795819154107924, 0.10233349538162373, 0.10865337870685464, 0.11594555177442878, 0.12615459406903257, 0.1762275157997083, 0.2605736509479825, 0.40617403986387945], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Apc13p.gap.json b/pfam_gap_rates/Apc13p.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1dfd988cd7c475cb3d5f769068dfb9dd16b7ec80
--- /dev/null
+++ b/pfam_gap_rates/Apc13p.gap.json
@@ -0,0 +1 @@
+{"family": "Apc13p", "n_seqs": 136, "length": 89, "gap_rates": [0.3014705882352941, 0.25, 0.2426470588235294, 0.2426470588235294, 0.5294117647058824, 0.5220588235294118, 0.5073529411764706, 0.22794117647058823, 0.22794117647058823, 0.19117647058823528, 0.16911764705882354, 0.16176470588235295, 0.13970588235294118, 0.1323529411764706, 0.08823529411764706, 0.10294117647058823, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.9485294117647058, 0.0661764705882353, 0.014705882352941176, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5661764705882353, 0.022058823529411766, 0.022058823529411766, 0.029411764705882353, 0.39705882352941174, 0.375, 0.3088235294117647, 0.29411764705882354, 0.3235294117647059, 0.3235294117647059, 0.3235294117647059, 0.33088235294117646, 0.33088235294117646, 0.34558823529411764, 0.33088235294117646, 0.33088235294117646, 0.051470588235294115, 0.07352941176470588, 0.0661764705882353, 0.0661764705882353, 0.07352941176470588, 0.08088235294117647, 0.08823529411764706, 0.11029411764705882, 0.10294117647058823, 0.10294117647058823, 0.08088235294117647, 0.08088235294117647, 0.11029411764705882, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.09558823529411764, 0.09558823529411764, 0.09558823529411764, 0.09558823529411764, 0.10294117647058823, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.125, 0.1323529411764706, 0.17647058823529413, 0.21323529411764705, 0.22794117647058823, 0.27205882352941174, 0.375, 0.4632352941176471, 0.5073529411764706, 0.7352941176470589, 0.8455882352941176], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ArAE_1_C.gap.json b/pfam_gap_rates/ArAE_1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..156f39230ad4b5942ebd4a5bf18bd3edb969e6cf
--- /dev/null
+++ b/pfam_gap_rates/ArAE_1_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Arginosuc_synth.gap.json b/pfam_gap_rates/Arginosuc_synth.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..da3103ed2f42c074da22e0f1eb0e2360142b7bf6
--- /dev/null
+++ b/pfam_gap_rates/Arginosuc_synth.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ArgoN.gap.json b/pfam_gap_rates/ArgoN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..10b235a7323e2475a4239f854bcfad59960e0aae
--- /dev/null
+++ b/pfam_gap_rates/ArgoN.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ArsB.gap.json b/pfam_gap_rates/ArsB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86133066a02f13d01c0db0f510593b8ae95b32d7
--- /dev/null
+++ b/pfam_gap_rates/ArsB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Atg8.gap.json b/pfam_gap_rates/Atg8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bb0eca1caf066f01f3922216cc525f2dfb8f1269
--- /dev/null
+++ b/pfam_gap_rates/Atg8.gap.json
@@ -0,0 +1 @@
+{"family": "Atg8", "n_seqs": 745, "length": 106, "gap_rates": [0.3516778523489933, 0.13557046979865772, 0.13288590604026845, 0.1221476510067114, 0.11946308724832215, 0.11543624161073826, 0.11140939597315436, 0.11006711409395974, 0.10335570469798658, 0.10067114093959731, 0.09798657718120805, 0.09261744966442953, 0.08322147651006712, 0.08187919463087248, 0.08187919463087248, 0.07919463087248323, 0.07516778523489932, 0.06577181208053691, 0.053691275167785234, 0.05503355704697987, 0.053691275167785234, 0.05100671140939597, 0.05100671140939597, 0.052348993288590606, 0.04832214765100671, 0.049664429530201344, 0.04832214765100671, 0.05100671140939597, 0.7825503355704698, 0.06308724832214765, 0.06308724832214765, 0.06040268456375839, 0.05906040268456376, 0.049664429530201344, 0.04832214765100671, 0.04429530201342282, 0.04563758389261745, 0.04697986577181208, 0.04429530201342282, 0.04563758389261745, 0.049664429530201344, 0.04429530201342282, 0.04697986577181208, 0.04563758389261745, 0.040268456375838924, 0.040268456375838924, 0.040268456375838924, 0.038926174496644296, 0.038926174496644296, 0.03758389261744966, 0.040268456375838924, 0.04161073825503356, 0.040268456375838924, 0.038926174496644296, 0.038926174496644296, 0.04161073825503356, 0.036241610738255034, 0.04161073825503356, 0.04161073825503356, 0.04161073825503356, 0.04429530201342282, 0.04563758389261745, 0.04832214765100671, 0.053691275167785234, 0.04832214765100671, 0.04832214765100671, 0.04832214765100671, 0.052348993288590606, 0.05100671140939597, 0.052348993288590606, 0.052348993288590606, 0.7543624161073825, 0.05100671140939597, 0.049664429530201344, 0.049664429530201344, 0.05100671140939597, 0.049664429530201344, 0.053691275167785234, 0.05906040268456376, 0.05906040268456376, 0.05906040268456376, 0.05906040268456376, 0.05906040268456376, 0.05906040268456376, 0.05906040268456376, 0.06040268456375839, 0.06711409395973154, 0.06845637583892618, 0.06845637583892618, 0.0738255033557047, 0.07516778523489932, 0.07516778523489932, 0.07785234899328859, 0.07919463087248323, 0.08053691275167785, 0.08456375838926175, 0.08590604026845637, 0.08590604026845637, 0.087248322147651, 0.09261744966442953, 0.09395973154362416, 0.10067114093959731, 0.10604026845637583, 0.11006711409395974, 0.11946308724832215, 0.12483221476510067], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BAAT_C.gap.json b/pfam_gap_rates/BAAT_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..368f6ba55891791ee420eeb624495e040f6d54f7
--- /dev/null
+++ b/pfam_gap_rates/BAAT_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BHD_3.gap.json b/pfam_gap_rates/BHD_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..53b6f9af90447f44b4121f93a5cc9d48fb591ca0
--- /dev/null
+++ b/pfam_gap_rates/BHD_3.gap.json
@@ -0,0 +1 @@
+{"family": "BHD_3", "n_seqs": 400, "length": 80, "gap_rates": [0.0825, 0.0725, 0.0625, 0.0575, 0.0575, 0.0475, 0.0425, 0.0425, 0.04, 0.035, 0.0325, 0.03, 0.03, 0.03, 0.0225, 0.0175, 0.0175, 0.0175, 0.015, 0.015, 0.015, 0.015, 0.015, 0.015, 0.93, 0.94, 0.9225, 0.015, 0.0225, 0.02, 0.02, 0.015, 0.015, 0.015, 0.015, 0.015, 0.015, 0.025, 0.0175, 0.015, 0.015, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.01, 0.01, 0.01, 0.01, 0.0125, 0.0125, 0.5725, 0.5125, 0.1325, 0.105, 0.1125, 0.36, 0.9375, 0.27, 0.02, 0.0225, 0.03, 0.03, 0.03, 0.03, 0.03, 0.0325, 0.035, 0.035, 0.035, 0.035, 0.0475, 0.055, 0.0575, 0.0825, 0.12, 0.27, 0.9], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BLM10_mid.gap.json b/pfam_gap_rates/BLM10_mid.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f5683ff1a5e77f9b2a4d7a1eb815d875b2d199f1
--- /dev/null
+++ b/pfam_gap_rates/BLM10_mid.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BNR_3.gap.json b/pfam_gap_rates/BNR_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b1e24a94cc32a9b93775fa17df2a5686d7a7d050
--- /dev/null
+++ b/pfam_gap_rates/BNR_3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BRCA-2_OB1.gap.json b/pfam_gap_rates/BRCA-2_OB1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ff46fef3b108bfc247b8378f91ab128a96b664b7
--- /dev/null
+++ b/pfam_gap_rates/BRCA-2_OB1.gap.json
@@ -0,0 +1 @@
+{"family": "BRCA-2_OB1", "n_seqs": 197, "length": 161, "gap_rates": [0.16243654822335024, 0.1218274111675127, 0.04568527918781726, 0.04568527918781726, 0.04568527918781726, 0.04568527918781726, 0.04568527918781726, 0.04568527918781726, 0.04568527918781726, 0.04060913705583756, 0.04060913705583756, 0.04060913705583756, 0.03553299492385787, 0.03553299492385787, 0.03553299492385787, 0.03553299492385787, 0.030456852791878174, 0.030456852791878174, 0.030456852791878174, 0.030456852791878174, 0.030456852791878174, 0.030456852791878174, 0.030456852791878174, 0.04060913705583756, 0.04060913705583756, 0.04060913705583756, 0.04568527918781726, 0.09137055837563451, 0.1319796954314721, 0.16751269035532995, 0.19796954314720813, 0.25380710659898476, 0.27918781725888325, 0.38578680203045684, 0.5888324873096447, 0.6548223350253807, 0.6903553299492385, 0.8274111675126904, 0.8426395939086294, 0.8477157360406091, 0.8527918781725888, 0.8578680203045685, 0.934010152284264, 0.9390862944162437, 0.949238578680203, 0.9441624365482234, 0.934010152284264, 0.8629441624365483, 0.8578680203045685, 0.8527918781725888, 0.8477157360406091, 0.8375634517766497, 0.7969543147208121, 0.6751269035532995, 0.6345177664974619, 0.5634517766497462, 0.5126903553299492, 0.4720812182741117, 0.4517766497461929, 0.41116751269035534, 0.39086294416243655, 0.3299492385786802, 0.2436548223350254, 0.17766497461928935, 0.04568527918781726, 0.04568527918781726, 0.025380710659898477, 0.025380710659898477, 0.025380710659898477, 0.025380710659898477, 0.025380710659898477, 0.030456852791878174, 0.025380710659898477, 0.025380710659898477, 0.025380710659898477, 0.03553299492385787, 0.030456852791878174, 0.030456852791878174, 0.030456852791878174, 0.03553299492385787, 0.03553299492385787, 0.03553299492385787, 0.04060913705583756, 0.025380710659898477, 0.025380710659898477, 0.025380710659898477, 0.025380710659898477, 0.030456852791878174, 0.030456852791878174, 0.06091370558375635, 0.06598984771573604, 0.03553299492385787, 0.025380710659898477, 0.025380710659898477, 0.025380710659898477, 0.025380710659898477, 0.030456852791878174, 0.03553299492385787, 0.03553299492385787, 0.03553299492385787, 0.03553299492385787, 0.03553299492385787, 0.03553299492385787, 0.03553299492385787, 0.03553299492385787, 0.8730964467005076, 0.18274111675126903, 0.050761421319796954, 0.04568527918781726, 0.9441624365482234, 0.9441624365482234, 0.949238578680203, 0.9441624365482234, 0.9441624365482234, 0.9390862944162437, 0.04568527918781726, 0.06091370558375635, 0.06091370558375635, 0.05583756345177665, 0.06091370558375635, 0.06091370558375635, 0.06091370558375635, 0.04568527918781726, 0.883248730964467, 0.9035532994923858, 0.9238578680203046, 0.9441624365482234, 0.9441624365482234, 0.9441624365482234, 0.9441624365482234, 0.9238578680203046, 0.8984771573604061, 0.8426395939086294, 0.7157360406091371, 0.09137055837563451, 0.07614213197969544, 0.06091370558375635, 0.05583756345177665, 0.050761421319796954, 0.050761421319796954, 0.050761421319796954, 0.050761421319796954, 0.06091370558375635, 0.06091370558375635, 0.06091370558375635, 0.06091370558375635, 0.06091370558375635, 0.06091370558375635, 0.06091370558375635, 0.07106598984771574, 0.07106598984771574, 0.07106598984771574, 0.07106598984771574, 0.07106598984771574, 0.07106598984771574, 0.07106598984771574, 0.07106598984771574, 0.07106598984771574, 0.07614213197969544, 0.18274111675126903, 0.8324873096446701], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bac_export_3.gap.json b/pfam_gap_rates/Bac_export_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f82705f22b72ada545775ab92151538f649ff000
--- /dev/null
+++ b/pfam_gap_rates/Bac_export_3.gap.json
@@ -0,0 +1 @@
+{"family": "Bac_export_3", "n_seqs": 1025, "length": 74, "gap_rates": [0.9395121951219512, 0.18634146341463415, 0.06926829268292684, 0.04097560975609756, 0.0224390243902439, 0.014634146341463415, 0.013658536585365854, 0.012682926829268294, 0.012682926829268294, 0.012682926829268294, 0.00975609756097561, 0.00975609756097561, 0.00878048780487805, 0.00878048780487805, 0.005853658536585366, 0.005853658536585366, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.003902439024390244, 0.003902439024390244, 0.002926829268292683, 0.002926829268292683, 0.002926829268292683, 0.002926829268292683, 0.002926829268292683, 0.001951219512195122, 0.000975609756097561, 0.000975609756097561, 0.000975609756097561, 0.000975609756097561, 0.000975609756097561, 0.000975609756097561, 0.000975609756097561, 0.000975609756097561, 0.000975609756097561, 0.000975609756097561, 0.000975609756097561, 0.000975609756097561, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.000975609756097561, 0.000975609756097561, 0.000975609756097561, 0.000975609756097561, 0.001951219512195122, 0.000975609756097561, 0.000975609756097561, 0.000975609756097561, 0.002926829268292683, 0.003902439024390244, 0.003902439024390244, 0.003902439024390244, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.007804878048780488, 0.0175609756097561, 0.03024390243902439, 0.07414634146341463, 0.848780487804878], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Beta_helix.gap.json b/pfam_gap_rates/Beta_helix.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a5c8f4404be9d00103e4e189c02d50ef766be972
--- /dev/null
+++ b/pfam_gap_rates/Beta_helix.gap.json
@@ -0,0 +1 @@
+{"family": "Beta_helix", "n_seqs": 4205, "length": 256, "gap_rates": [0.9405469678953626, 0.7774078478002379, 0.7143876337693222, 0.6815695600475624, 0.6518430439952437, 0.6214030915576695, 0.5807372175980975, 0.5512485136741974, 0.518192627824019, 0.4896551724137931, 0.9443519619500594, 0.5227110582639715, 0.38882282996432815, 0.3560047562425684, 0.34625445897740786, 0.3381688466111772, 0.3286563614744352, 0.31938168846611176, 0.31343638525564804, 0.30820451843043994, 0.30273483947681334, 0.38192627824019026, 0.853269916765755, 0.8898929845422117, 0.9246135552913198, 0.947205707491082, 0.935077288941736, 0.9103448275862069, 0.8699167657550535, 0.8256837098692034, 0.2741973840665874, 0.24304399524375744, 0.2235434007134364, 0.20737217598097504, 0.19881093935790725, 0.19357907253269918, 0.1859690844233056, 0.1812128418549346, 0.17312722948870393, 0.1643281807372176, 0.15671819262782402, 0.1479191438763377, 0.8444708680142687, 0.8789536266349584, 0.9186682520808561, 0.949821640903686, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Big_5.gap.json b/pfam_gap_rates/Big_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e7dd16bd8defccdaecb69605630bfd7124ae1d1a
--- /dev/null
+++ b/pfam_gap_rates/Big_5.gap.json
@@ -0,0 +1 @@
+{"family": "Big_5", "n_seqs": 1363, "length": 130, "gap_rates": [0.6052824651504035, 0.5275128393250184, 0.4101247248716067, 0.3008070432868672, 0.24064563462949376, 0.19809244314013205, 0.1731474688187821, 0.16140865737344093, 0.14233308877476156, 0.11885546588407923, 0.10858400586940573, 0.10271460014673514, 0.10344827586206896, 0.10344827586206896, 0.0983125458547322, 0.08070432868672046, 0.06382978723404255, 0.07850330154071901, 0.05942773294203962, 0.05282465150403522, 0.05062362435803375, 0.9413059427732942, 0.05722670579603815, 0.10051357300073367, 0.016140865737344093, 0.013939838591342627, 0.007336757153338224, 0.007336757153338224, 0.006603081438004402, 0.006603081438004402, 0.006603081438004402, 0.006603081438004402, 0.009537784299339692, 0.00880410858400587, 0.9457079970652972, 0.015407190022010272, 0.012472487160674981, 0.008070432868672046, 0.006603081438004402, 0.019809244314013204, 0.04842259721203228, 0.0491562729273661, 0.03008070432868672, 0.10564930300807043, 0.04548789435069699, 0.03374908290535583, 0.4512105649303008, 0.4387380777696258, 0.8451944240645635, 0.9038884812912693, 0.9288334556126192, 0.9471753484959647, 0.9361702127659575, 0.9185619955979457, 0.8782098312545855, 0.7879677182685253, 0.13646368305209097, 0.07410124724871607, 0.058694057226705794, 0.07410124724871607, 0.05282465150403522, 0.04035216434336023, 0.03888481291269259, 0.03301540719002201, 0.043286867204695524, 0.0748349229640499, 0.04475421863536317, 0.6265590608950844, 0.863536316947909, 0.9280997798972854, 0.9479090242112986, 0.9002201027146002, 0.8114453411592076, 0.5399853264856933, 0.32575201760821715, 0.28613352898019073, 0.019075568598679385, 0.014673514306676448, 0.008070432868672046, 0.8576669112252384, 0.006603081438004402, 0.005135730007336757, 0.005135730007336757, 0.005135730007336757, 0.004402054292002935, 0.007336757153338224, 0.006603081438004402, 0.007336757153338224, 0.9200293470286134, 0.011005135730007337, 0.07703595011005136, 0.00586940572267058, 0.02714600146735143, 0.00586940572267058, 0.004402054292002935, 0.010271460014673514, 0.00586940572267058, 0.006603081438004402, 0.007336757153338224, 0.008070432868672046, 0.008070432868672046, 0.00880410858400587, 0.13866471019809246, 0.041085840058694055, 0.02347762289068232, 0.6947909024211298, 0.04695524578136464, 0.03961848862802641, 0.029347028613352897, 0.030814380044020543, 0.03154805575935436, 0.049889948642699924, 0.8048422597212033, 0.05942773294203962, 0.30007336757153336, 0.946441672780631, 0.2714600146735143, 0.2971386647101981, 0.33088774761555395, 0.17754952311078503, 0.169479090242113, 0.1760821716801174, 0.6067498165810712, 0.586940572267058, 0.5641966250917094, 0.16434336023477622, 0.16801173881144535, 0.17168011738811445, 0.21203228173147468, 0.29860601614086574], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Biotin_carb_N.gap.json b/pfam_gap_rates/Biotin_carb_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72c6e30bae01f3236a247c803045a6043b4b2df9
--- /dev/null
+++ b/pfam_gap_rates/Biotin_carb_N.gap.json
@@ -0,0 +1 @@
+{"family": "Biotin_carb_N", "n_seqs": 4892, "length": 122, "gap_rates": [0.562346688470973, 0.16148814390842192, 0.06030253475061324, 0.045380212591986914, 0.042722812755519216, 0.035772690106295996, 0.03556827473426002, 0.03311529026982829, 0.03250204415372036, 0.03209321340964841, 0.031479967293540474, 0.03107113654946852, 0.03025347506132461, 0.03025347506132461, 0.029231398201144725, 0.02902698282910875, 0.030049059689288636, 0.02636958299264105, 0.025960752248569093, 0.025756336876533115, 0.02473426001635323, 0.024325429272281276, 0.02391659852820932, 0.020850367947669663, 0.9182338511856092, 0.9200735895339329, 0.9202780049059689, 0.9276369582992641, 0.92886345053148, 0.9276369582992641, 0.9200735895339329, 0.919664758789861, 0.9149632052330335, 0.019623875715453803, 0.01901062959934587, 0.01901062959934587, 0.01901062959934587, 0.01901062959934587, 0.018806214227309895, 0.018601798855273917, 0.018601798855273917, 0.018806214227309895, 0.01839738348323794, 0.01778413736713001, 0.9497138184791496, 0.9488961569910057, 0.017375306623058053, 0.017988552739165987, 0.019419460343417825, 0.020850367947669663, 0.016762060506950123, 0.014513491414554375, 0.014513491414554375, 0.012878168438266557, 0.010834014717906787, 0.010425183973834832, 0.010220768601798855, 0.010220768601798855, 0.010834014717906787, 0.010220768601798855, 0.010220768601798855, 0.010220768601798855, 0.013286999182338511, 0.8757154538021259, 0.08094848732624693, 0.050695012264922325, 0.04333605887162715, 0.03025347506132461, 0.01901062959934587, 0.014717906786590351, 0.009403107113654947, 0.009403107113654947, 0.00919869174161897, 0.008381030253475062, 0.008585445625511038, 0.007972199509403107, 0.007972199509403107, 0.007972199509403107, 0.00776778413736713, 0.00776778413736713, 0.007154538021259199, 0.006950122649223222, 0.006950122649223222, 0.006950122649223222, 0.006950122649223222, 0.006950122649223222, 0.007154538021259199, 0.00919869174161897, 0.00776778413736713, 0.007972199509403107, 0.007563368765331153, 0.00776778413736713, 0.00776778413736713, 0.007972199509403107, 0.008176614881439084, 0.008176614881439084, 0.008176614881439084, 0.01062959934587081, 0.008789860997547016, 0.008789860997547016, 0.008789860997547016, 0.008789860997547016, 0.008789860997547016, 0.008994276369582993, 0.008994276369582993, 0.00919869174161897, 0.009403107113654947, 0.009811937857726901, 0.010016353229762878, 0.010834014717906787, 0.011038430089942763, 0.011038430089942763, 0.011242845461978741, 0.011651676206050695, 0.011651676206050695, 0.011856091578086671, 0.012264922322158627, 0.012264922322158627, 0.013695829926410465, 0.02350776778413737, 0.04088307440719542, 0.16905151267375307], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bowman-Birk_leg.gap.json b/pfam_gap_rates/Bowman-Birk_leg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22268b601979bddd55d97f9be14064196ad2b94d
--- /dev/null
+++ b/pfam_gap_rates/Bowman-Birk_leg.gap.json
@@ -0,0 +1 @@
+{"family": "Bowman-Birk_leg", "n_seqs": 161, "length": 26, "gap_rates": [0.10559006211180125, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.0, 0.6086956521739131, 0.0, 0.0, 0.10559006211180125, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7888198757763976, 0.006211180124223602, 0.018633540372670808, 0.024844720496894408, 0.06832298136645963, 0.33540372670807456], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bromo_TP.gap.json b/pfam_gap_rates/Bromo_TP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b78a19be8e2bb97c1b4ed0eda5395e513139ff9
--- /dev/null
+++ b/pfam_gap_rates/Bromo_TP.gap.json
@@ -0,0 +1 @@
+{"family": "Bromo_TP", "n_seqs": 581, "length": 78, "gap_rates": [0.6746987951807228, 0.45266781411359724, 0.27710843373493976, 0.20137693631669534, 0.14974182444061962, 0.08777969018932874, 0.06712564543889846, 0.06196213425129088, 0.04991394148020654, 0.04647160068846816, 0.04475043029259897, 0.04130808950086059, 0.03442340791738382, 0.024096385542168676, 0.022375215146299483, 0.020654044750430294, 0.0189328743545611, 0.024096385542168676, 0.022375215146299483, 0.01549053356282272, 0.01549053356282272, 0.013769363166953529, 0.01549053356282272, 0.012048192771084338, 0.010327022375215147, 0.010327022375215147, 0.008605851979345954, 0.008605851979345954, 0.008605851979345954, 0.008605851979345954, 0.008605851979345954, 0.0068846815834767644, 0.0068846815834767644, 0.0068846815834767644, 0.0068846815834767644, 0.010327022375215147, 0.010327022375215147, 0.012048192771084338, 0.008605851979345954, 0.008605851979345954, 0.008605851979345954, 0.008605851979345954, 0.0068846815834767644, 0.010327022375215147, 0.010327022375215147, 0.06884681583476764, 0.01721170395869191, 0.020654044750430294, 0.024096385542168676, 0.03098106712564544, 0.8623063683304647, 0.05679862306368331, 0.06712564543889846, 0.08433734939759036, 0.08950086058519793, 0.10154905335628227, 0.11359724612736662, 0.11876075731497418, 0.13080895008605853, 0.14285714285714285, 0.9414802065404475, 0.1514629948364888, 0.15834767641996558, 0.16179001721170397, 0.16523235800344235, 0.16695352839931152, 0.1703958691910499, 0.1721170395869191, 0.18072289156626506, 0.19104991394148021, 0.22547332185886404, 0.25817555938037867, 0.3029259896729776, 0.43717728055077454, 0.6092943201376936, 0.7091222030981067, 0.7969018932874354, 0.9328743545611016], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/C8.gap.json b/pfam_gap_rates/C8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f7fdb918310d09e1b257fbd44be06bce9542e9c2
--- /dev/null
+++ b/pfam_gap_rates/C8.gap.json
@@ -0,0 +1 @@
+{"family": "C8", "n_seqs": 1419, "length": 73, "gap_rates": [0.6187455954897816, 0.08315715292459479, 0.08315715292459479, 0.07540521494009866, 0.06976744186046512, 0.06272022551092318, 0.080338266384778, 0.14376321353065538, 0.5271317829457365, 0.38266384778012685, 0.04933051444679352, 0.037350246652572236, 0.03453136011275546, 0.02748414376321353, 0.0204369274136716, 0.03171247357293869, 0.03241719520789288, 0.021846370683579985, 0.014799154334038054, 0.010570824524312896, 0.010570824524312896, 0.010570824524312896, 0.008456659619450317, 0.005637773079633545, 0.0035236081747709656, 0.0028188865398167725, 0.004933051444679351, 0.004228329809725159, 0.004228329809725159, 0.0021141649048625794, 0.0021141649048625794, 0.0007047216349541931, 0.0007047216349541931, 0.028188865398167725, 0.923185341789993, 0.047216349541930935, 0.1331923890063425, 0.11205073995771671, 0.897815362931642, 0.6589147286821705, 0.15997181113460182, 0.06553911205073996, 0.018322762508809022, 0.7610993657505285, 0.004228329809725159, 0.0028188865398167725, 0.0028188865398167725, 0.0021141649048625794, 0.0028188865398167725, 0.0028188865398167725, 0.006342494714587738, 0.007047216349541931, 0.008456659619450317, 0.008456659619450317, 0.009161381254404511, 0.009161381254404511, 0.009866102889358703, 0.011980267794221282, 0.014799154334038054, 0.018322762508809022, 0.021141649048625793, 0.028893587033121917, 0.03312191684284708, 0.03453136011275546, 0.4587737843551797, 0.04369274136715997, 0.04439746300211417, 0.04439746300211417, 0.046511627906976744, 0.080338266384778, 0.12332628611698379, 0.21282593375616632, 0.25299506694855534], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CAC1F_C.gap.json b/pfam_gap_rates/CAC1F_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9c39b2a436a1a793c893713548f8744409170988
--- /dev/null
+++ b/pfam_gap_rates/CAC1F_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CALCOCO1.gap.json b/pfam_gap_rates/CALCOCO1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3df462c1c81da159e2b1d1deaf1d6995a479852c
--- /dev/null
+++ b/pfam_gap_rates/CALCOCO1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CCP_MauG.gap.json b/pfam_gap_rates/CCP_MauG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a5c917ec9a986a4596aff495449d02dcab1c7405
--- /dev/null
+++ b/pfam_gap_rates/CCP_MauG.gap.json
@@ -0,0 +1 @@
+{"family": "CCP_MauG", "n_seqs": 1098, "length": 258, "gap_rates": [0.38524590163934425, 0.16393442622950818, 0.08561020036429873, 0.06375227686703097, 0.05737704918032787, 0.04189435336976321, 0.04189435336976321, 0.04007285974499089, 0.039162112932604735, 0.039162112932604735, 0.039162112932604735, 0.039162112932604735, 0.058287795992714025, 0.04918032786885246, 0.04644808743169399, 0.04553734061930783, 0.04553734061930783, 0.037340619307832425, 0.03551912568306011, 0.042805100182149364, 0.031876138433515486, 0.026411657559198543, 0.025500910746812388, 0.025500910746812388, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.056466302367941715, 0.06284153005464481, 0.044626593806921674, 0.030054644808743168, 0.02459016393442623, 0.025500910746812388, 0.031876138433515486, 0.040983606557377046, 0.9289617486338798, 0.9426229508196722, 0.924408014571949, 0.04553734061930783, 0.04007285974499089, 0.8351548269581056, 0.04189435336976321, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CD225.gap.json b/pfam_gap_rates/CD225.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..476e0e6dcf64e041a5d38aab2d1af400b20d29d6
--- /dev/null
+++ b/pfam_gap_rates/CD225.gap.json
@@ -0,0 +1 @@
+{"family": "CD225", "n_seqs": 478, "length": 71, "gap_rates": [0.6171548117154811, 0.26569037656903766, 0.2489539748953975, 0.10460251046025104, 0.08786610878661087, 0.06694560669456066, 0.05230125523012552, 0.0397489539748954, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.03347280334728033, 0.02510460251046025, 0.02510460251046025, 0.058577405857740586, 0.7635983263598326, 0.7719665271966527, 0.7552301255230126, 0.08158995815899582, 0.02510460251046025, 0.029288702928870293, 0.28870292887029286, 0.22594142259414227, 0.01882845188284519, 0.01882845188284519, 0.01882845188284519, 0.01882845188284519, 0.01882845188284519, 0.01882845188284519, 0.01882845188284519, 0.016736401673640166, 0.014644351464435146, 0.010460251046025104, 0.016736401673640166, 0.02510460251046025, 0.03138075313807531, 0.03556485355648536, 0.03556485355648536, 0.0397489539748954, 0.0397489539748954, 0.043933054393305436, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.043933054393305436, 0.043933054393305436, 0.043933054393305436, 0.043933054393305436, 0.043933054393305436, 0.043933054393305436, 0.043933054393305436, 0.043933054393305436, 0.04602510460251046, 0.04602510460251046, 0.04602510460251046, 0.0502092050209205, 0.0502092050209205, 0.05230125523012552, 0.0502092050209205, 0.0502092050209205, 0.05230125523012552, 0.056485355648535567, 0.056485355648535567, 0.058577405857740586, 0.058577405857740586, 0.06485355648535565, 0.07322175732217573, 0.10669456066945607, 0.16527196652719664, 0.3138075313807531, 0.7071129707112971], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CHDNT.gap.json b/pfam_gap_rates/CHDNT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fa92154008bbd7f39b61a60a91034ee288067876
--- /dev/null
+++ b/pfam_gap_rates/CHDNT.gap.json
@@ -0,0 +1 @@
+{"family": "CHDNT", "n_seqs": 101, "length": 54, "gap_rates": [0.6435643564356436, 0.25742574257425743, 0.1485148514851485, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.039603960396039604, 0.04950495049504951, 0.039603960396039604, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.0297029702970297, 0.0297029702970297, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.019801980198019802, 0.0891089108910891, 0.13861386138613863, 0.22772277227722773], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CHGN.gap.json b/pfam_gap_rates/CHGN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5463877c9e67fb655e20ba968728ff98419ad97b
--- /dev/null
+++ b/pfam_gap_rates/CHGN.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CHMI.gap.json b/pfam_gap_rates/CHMI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3417eb26369efffc1a525b85962585843242a847
--- /dev/null
+++ b/pfam_gap_rates/CHMI.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CIMR.gap.json b/pfam_gap_rates/CIMR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..18419f3be55504811b76f4a7072ba47e9d94165d
--- /dev/null
+++ b/pfam_gap_rates/CIMR.gap.json
@@ -0,0 +1 @@
+{"family": "CIMR", "n_seqs": 613, "length": 173, "gap_rates": [0.7536704730831973, 0.5807504078303426, 0.3735725938009788, 0.15823817292006526, 0.10929853181076672, 0.09135399673735727, 0.0799347471451876, 0.0799347471451876, 0.0766721044045677, 0.07504078303425775, 0.0734094616639478, 0.0701468189233279, 0.06851549755301795, 0.06688417618270799, 0.06688417618270799, 0.3197389885807504, 0.2137030995106036, 0.06035889070146819, 0.8890701468189234, 0.9282218597063622, 0.8075040783034257, 0.05872756933115824, 0.05546492659053834, 0.05057096247960848, 0.04730831973898858, 0.04730831973898858, 0.053833605220228384, 0.04404567699836868, 0.04567699836867863, 0.601957585644372, 0.9396411092985318, 0.9265905383360522, 0.5611745513866232, 0.048939641109298535, 0.03425774877650897, 0.03262642740619902, 0.03099510603588907, 0.03262642740619902, 0.02936378466557912, 0.02773246329526917, 0.02936378466557912, 0.02936378466557912, 0.02936378466557912, 0.02936378466557912, 0.026101141924959218, 0.02773246329526917, 0.022838499184339316, 0.022838499184339316, 0.5481239804241436, 0.8172920065252854, 0.9184339314845025, 0.7797716150081566, 0.4437194127243067, 0.29200652528548127, 0.12561174551386622, 0.053833605220228384, 0.05872756933115824, 0.057096247960848286, 0.05057096247960848, 0.05057096247960848, 0.053833605220228384, 0.05546492659053834, 0.05872756933115824, 0.06851549755301795, 0.06851549755301795, 0.0766721044045677, 0.22022838499184338, 0.5464926590538336, 0.08972267536704731, 0.0799347471451876, 0.07177814029363784, 0.07177814029363784, 0.0701468189233279, 0.0734094616639478, 0.0766721044045677, 0.0766721044045677, 0.08972267536704731, 0.10929853181076672, 0.1468189233278956, 0.1631321370309951, 0.15823817292006526, 0.8743882544861338, 0.8988580750407831, 0.8482871125611745, 0.1533442088091354, 0.1272430668841762, 0.12561174551386622, 0.11419249592169657, 0.11745513866231648, 0.11256117455138662, 0.11745513866231648, 0.13376835236541598, 0.15171288743882544, 0.1729200652528548, 0.8776508972267537, 0.7259380097879282, 0.6378466557911908, 0.5530179445350734, 0.42251223491027734, 0.27732463295269166, 0.10766721044045677, 0.10440456769983687, 0.09951060358890701, 0.09951060358890701, 0.09951060358890701, 0.09951060358890701, 0.09951060358890701, 0.6394779771615008, 0.866231647634584, 0.9396411092985318, 0.9445350734094616, 0.9151712887438825, 0.7422512234910277, 0.5856443719412724, 0.300163132137031, 0.17944535073409462, 0.1631321370309951, 0.13050570962479607, 0.12071778140293637, 0.11419249592169657, 0.10929853181076672, 0.11256117455138662, 0.12071778140293637, 0.9265905383360522, 0.7781402936378466, 0.14355628058727568, 0.11582381729200653, 0.11745513866231648, 0.11419249592169657, 0.11745513866231648, 0.11908646003262642, 0.12234910277324633, 0.1402936378466558, 0.14845024469820556, 0.15171288743882544, 0.8172920065252854, 0.9168026101141925, 0.634584013050571, 0.1566068515497553, 0.16639477977161501, 0.16150081566068517, 0.9363784665579119, 0.9314845024469821, 0.15823817292006526, 0.1566068515497553, 0.15171288743882544, 0.15171288743882544, 0.1533442088091354, 0.1631321370309951, 0.17455138662316477, 0.16965742251223492, 0.16150081566068517, 0.16476345840130505, 0.16965742251223492, 0.17128874388254486, 0.17944535073409462, 0.9200652528548124, 0.6639477977161501, 0.18270799347471453, 0.18270799347471453, 0.18270799347471453, 0.18433931484502447, 0.1859706362153344, 0.18760195758564438, 0.19412724306688417, 0.19738988580750408, 0.22185970636215335, 0.2969004893964111, 0.3197389885807504, 0.33931484502446985, 0.3621533442088091, 0.38499184339314846, 0.7373572593800979], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COX2_TM.gap.json b/pfam_gap_rates/COX2_TM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8315640c801b51646f18162a553781041af02079
--- /dev/null
+++ b/pfam_gap_rates/COX2_TM.gap.json
@@ -0,0 +1 @@
+{"family": "COX2_TM", "n_seqs": 1073, "length": 92, "gap_rates": [0.7185461323392358, 0.6775396085740913, 0.5936626281453867, 0.5302889095992545, 0.4846225535880708, 0.451071761416589, 0.4147250698974837, 0.9450139794967382, 0.9459459459459459, 0.9450139794967382, 0.35787511649580617, 0.3429636533084809, 0.315004659832246, 0.30288909599254427, 0.2842497670083877, 0.25629077353215285, 0.22926374650512582, 0.22646784715750232, 0.2124883504193849, 0.2022367194780988, 0.19105312208760486, 0.15563839701770738, 0.14725069897483692, 0.13140726933830382, 0.12488350419384903, 0.11835973904939422, 0.11090400745573159, 0.09599254426840634, 0.08201304753028892, 0.05778191985088537, 0.032618825722273995, 0.02516309412861137, 0.022367194780987885, 0.023299161230195712, 0.0195712954333644, 0.017707362534948742, 0.01863932898415657, 0.0195712954333644, 0.017707362534948742, 0.016775396085740912, 0.014911463187325256, 0.014911463187325256, 0.009319664492078284, 0.008387698042870456, 0.007455731593662628, 0.005591798695246971, 0.0065237651444548, 0.008387698042870456, 0.0065237651444548, 0.009319664492078284, 0.06523765144454799, 0.06430568499534017, 0.045666356011183594, 0.036346691519105315, 0.033550792171481825, 0.033550792171481825, 0.010251630941286114, 0.009319664492078284, 0.009319664492078284, 0.08294501397949673, 0.021435228331780055, 0.43988816402609504, 0.07455731593662628, 0.021435228331780055, 0.0195712954333644, 0.0195712954333644, 0.0195712954333644, 0.0195712954333644, 0.6933830382106244, 0.0195712954333644, 0.0195712954333644, 0.0195712954333644, 0.0195712954333644, 0.021435228331780055, 0.022367194780987885, 0.022367194780987885, 0.023299161230195712, 0.022367194780987885, 0.022367194780987885, 0.024231127679403542, 0.02516309412861137, 0.024231127679403542, 0.02982292637465051, 0.0521901211556384, 0.07455731593662628, 0.13233923578751164, 0.157502329916123, 0.17893755824790308, 0.25256290773532153, 0.4594594594594595, 0.5731593662628145, 0.6710158434296365], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CRM1_C.gap.json b/pfam_gap_rates/CRM1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc1ae65a7216acad42af1af174014efe82e61afd
--- /dev/null
+++ b/pfam_gap_rates/CRM1_C.gap.json
@@ -0,0 +1 @@
+{"family": "CRM1_C", "n_seqs": 445, "length": 341, "gap_rates": [0.30337078651685395, 0.2786516853932584, 0.27191011235955054, 0.26741573033707866, 0.25842696629213485, 0.25617977528089886, 0.25617977528089886, 0.24719101123595505, 0.23820224719101124, 0.23595505617977527, 0.23146067415730337, 0.2292134831460674, 0.2292134831460674, 0.2292134831460674, 0.2292134831460674, 0.22696629213483147, 0.22696629213483147, 0.22696629213483147, 0.22696629213483147, 0.22696629213483147, 0.22696629213483147, 0.2247191011235955, 0.2606741573033708, 0.25617977528089886, 0.24719101123595505, 0.24044943820224718, 0.24269662921348314, 0.23820224719101124, 0.23146067415730337, 0.23370786516853934, 0.23146067415730337, 0.2292134831460674, 0.2247191011235955, 0.2247191011235955, 0.22247191011235956, 0.20898876404494382, 0.20674157303370785, 0.20449438202247192, 0.2, 0.19550561797752808, 0.19325842696629214, 0.19101123595505617, 0.18876404494382024, 0.19101123595505617, 0.18651685393258427, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CUB.gap.json b/pfam_gap_rates/CUB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc55447f26585adfae5853a10773b436665ae042
--- /dev/null
+++ b/pfam_gap_rates/CUB.gap.json
@@ -0,0 +1 @@
+{"family": "CUB", "n_seqs": 5000, "length": 126, "gap_rates": [0.3906, 0.387, 0.3818, 0.3642, 0.9048, 0.8248, 0.3066, 0.2726, 0.2308, 0.1856, 0.1524, 0.1296, 0.1154, 0.107, 0.1052, 0.1034, 0.0972, 0.0954, 0.09, 0.0874, 0.0962, 0.9296, 0.0884, 0.0746, 0.0664, 0.054, 0.0482, 0.0412, 0.0384, 0.0376, 0.0358, 0.0356, 0.0356, 0.0338, 0.0336, 0.0342, 0.034, 0.0334, 0.0338, 0.0334, 0.0452, 0.922, 0.0296, 0.028, 0.0274, 0.0278, 0.0264, 0.0292, 0.0294, 0.926, 0.0268, 0.0278, 0.0274, 0.0278, 0.3314, 0.3116, 0.2946, 0.2782, 0.8214, 0.91, 0.943, 0.871, 0.772, 0.0908, 0.1154, 0.043, 0.0402, 0.0394, 0.0376, 0.038, 0.04, 0.0432, 0.0468, 0.0476, 0.0534, 0.0564, 0.1706, 0.161, 0.9334, 0.8394, 0.2234, 0.1662, 0.1, 0.0876, 0.0782, 0.0674, 0.0652, 0.0662, 0.1042, 0.8804, 0.949, 0.9276, 0.7776, 0.0866, 0.0746, 0.0744, 0.074, 0.075, 0.074, 0.0756, 0.076, 0.0766, 0.1022, 0.0802, 0.0804, 0.0812, 0.081, 0.0814, 0.0826, 0.0836, 0.0872, 0.0896, 0.0962, 0.1134, 0.1222, 0.134, 0.1574, 0.1668, 0.172, 0.1776, 0.181, 0.1888, 0.2004, 0.2276, 0.2946, 0.3986], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CUT.gap.json b/pfam_gap_rates/CUT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f64972dde7bcefc6c9c88473c8b381c5ba6bc42f
--- /dev/null
+++ b/pfam_gap_rates/CUT.gap.json
@@ -0,0 +1 @@
+{"family": "CUT", "n_seqs": 517, "length": 87, "gap_rates": [0.8549323017408124, 0.24758220502901354, 0.13926499032882012, 0.07156673114119923, 0.059961315280464215, 0.05415860735009671, 0.05222437137330754, 0.05029013539651837, 0.04642166344294004, 0.04448742746615087, 0.03868471953578337, 0.03868471953578337, 0.03481624758220503, 0.03481624758220503, 0.030947775628626693, 0.027079303675048357, 0.025145067698259187, 0.025145067698259187, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02127659574468085, 0.019342359767891684, 0.019342359767891684, 0.019342359767891684, 0.019342359767891684, 0.017408123791102514, 0.015473887814313346, 0.007736943907156673, 0.007736943907156673, 0.007736943907156673, 0.009671179883945842, 0.0038684719535783366, 0.0038684719535783366, 0.0038684719535783366, 0.0038684719535783366, 0.0038684719535783366, 0.0038684719535783366, 0.0038684719535783366, 0.0038684719535783366, 0.0038684719535783366, 0.8529980657640233, 0.8568665377176016, 0.8529980657640233, 0.0038684719535783366, 0.0038684719535783366, 0.0038684719535783366, 0.0038684719535783366, 0.8568665377176016, 0.8568665377176016, 0.8568665377176016, 0.8568665377176016, 0.8568665377176016, 0.0038684719535783366, 0.0038684719535783366, 0.0038684719535783366, 0.005802707930367505, 0.005802707930367505, 0.005802707930367505, 0.46421663442940037, 0.14893617021276595, 0.14893617021276595, 0.14893617021276595, 0.15087040618955513, 0.15087040618955513, 0.15087040618955513, 0.15087040618955513, 0.007736943907156673, 0.007736943907156673, 0.007736943907156673, 0.007736943907156673, 0.007736943907156673, 0.013539651837524178, 0.029013539651837523, 0.0735009671179884, 0.12379110251450677, 0.18181818181818182, 0.21663442940038685, 0.31334622823984526, 0.3733075435203095, 0.4506769825918762, 0.5802707930367504, 0.839458413926499, 0.9284332688588007], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/C_GCAxxG_C_C.gap.json b/pfam_gap_rates/C_GCAxxG_C_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6cd7c570f1c079949b7d08114cc5a2446d223e9e
--- /dev/null
+++ b/pfam_gap_rates/C_GCAxxG_C_C.gap.json
@@ -0,0 +1 @@
+{"family": "C_GCAxxG_C_C", "n_seqs": 670, "length": 171, "gap_rates": [0.39552238805970147, 0.15522388059701492, 0.11194029850746269, 0.10298507462686567, 0.09402985074626866, 0.07014925373134329, 0.0626865671641791, 0.05970149253731343, 0.05522388059701493, 0.05373134328358209, 0.050746268656716415, 0.04328358208955224, 0.04029850746268657, 0.03880597014925373, 0.04029850746268657, 0.8656716417910447, 0.8567164179104477, 0.034328358208955224, 0.03134328358208955, 0.028358208955223882, 0.025373134328358207, 0.03582089552238806, 0.826865671641791, 0.18358208955223881, 0.05970149253731343, 0.023880597014925373, 0.022388059701492536, 0.01791044776119403, 0.016417910447761194, 0.016417910447761194, 0.014925373134328358, 0.013432835820895522, 0.011940298507462687, 0.014925373134328358, 0.010447761194029851, 0.013432835820895522, 0.026865671641791045, 0.3044776119402985, 0.011940298507462687, 0.9343283582089552, 0.010447761194029851, 0.007462686567164179, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.007462686567164179, 0.007462686567164179, 0.008955223880597015, 0.010447761194029851, 0.008955223880597015, 0.010447761194029851, 0.010447761194029851, 0.011940298507462687, 0.010447761194029851, 0.011940298507462687, 0.01791044776119403, 0.16865671641791044, 0.16567164179104477, 0.16119402985074627, 0.1582089552238806, 0.34328358208955223, 0.6298507462686567, 0.935820895522388, 0.8955223880597015, 0.48059701492537316, 0.25223880597014925, 0.15970149253731344, 0.9447761194029851, 0.09253731343283582, 0.08208955223880597, 0.04029850746268657, 0.9477611940298507, 0.9373134328358209, 0.022388059701492536, 0.01791044776119403, 0.013432835820895522, 0.008955223880597015, 0.008955223880597015, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.8880597014925373, 0.8985074626865671, 0.9253731343283582, 0.9253731343283582, 0.926865671641791, 0.9328358208955224, 0.9328358208955224, 0.935820895522388, 0.9477611940298507, 0.9462686567164179, 0.9328358208955224, 0.9328358208955224, 0.9313432835820895, 0.9253731343283582, 0.9253731343283582, 0.9253731343283582, 0.8880597014925373, 0.8880597014925373, 0.007462686567164179, 0.007462686567164179, 0.917910447761194, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.04776119402985075, 0.5791044776119403, 0.6238805970149254, 0.7895522388059701, 0.8432835820895522, 0.9, 0.9373134328358209, 0.8776119402985074, 0.8194029850746268, 0.6626865671641791, 0.6119402985074627, 0.5746268656716418, 0.3895522388059702, 0.5970149253731343, 0.608955223880597, 0.3746268656716418, 0.8044776119402985, 0.9, 0.8597014925373134, 0.691044776119403, 0.40298507462686567, 0.3119402985074627, 0.21343283582089553, 0.15223880597014924, 0.1253731343283582, 0.12388059701492538, 0.05970149253731343, 0.06716417910447761, 0.10149253731343283, 0.43283582089552236, 0.4059701492537313, 0.32686567164179103, 0.9283582089552239, 0.9343283582089552, 0.9388059701492537, 0.9313432835820895, 0.9238805970149254, 0.01791044776119403, 0.01791044776119403, 0.022388059701492536, 0.022388059701492536, 0.023880597014925373, 0.023880597014925373, 0.026865671641791045, 0.03134328358208955, 0.03134328358208955, 0.03731343283582089, 0.06119402985074627, 0.07014925373134329, 0.1208955223880597, 0.22835820895522388, 0.6567164179104478], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CaKB.gap.json b/pfam_gap_rates/CaKB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d99f29ddcc208e47ebe6aceb549099c67397a7c
--- /dev/null
+++ b/pfam_gap_rates/CaKB.gap.json
@@ -0,0 +1 @@
+{"family": "CaKB", "n_seqs": 111, "length": 204, "gap_rates": [0.8108108108108109, 0.6216216216216216, 0.5135135135135135, 0.5135135135135135, 0.5135135135135135, 0.5135135135135135, 0.5135135135135135, 0.5135135135135135, 0.5045045045045045, 0.5045045045045045, 0.5045045045045045, 0.4954954954954955, 0.4864864864864865, 0.4594594594594595, 0.4144144144144144, 0.36936936936936937, 0.3063063063063063, 0.2882882882882883, 0.27927927927927926, 0.2702702702702703, 0.2702702702702703, 0.2702702702702703, 0.2702702702702703, 0.2702702702702703, 0.2702702702702703, 0.25225225225225223, 0.24324324324324326, 0.24324324324324326, 0.24324324324324326, 0.25225225225225223, 0.24324324324324326, 0.24324324324324326, 0.24324324324324326, 0.24324324324324326, 0.21621621621621623, 0.2072072072072072, 0.2072072072072072, 0.2072072072072072, 0.2072072072072072, 0.2072072072072072, 0.21621621621621623, 0.22522522522522523, 0.2072072072072072, 0.2072072072072072, 0.2072072072072072, 0.2072072072072072, 0.2072072072072072, 0.2072072072072072, 0.2072072072072072, 0.2072072072072072, 0.2072072072072072, 0.1981981981981982, 0.1981981981981982, 0.1981981981981982, 0.1981981981981982, 0.1981981981981982, 0.2072072072072072, 0.5135135135135135, 0.2972972972972973, 0.3063063063063063, 0.3333333333333333, 0.36936936936936937, 0.3333333333333333, 0.2972972972972973, 0.21621621621621623, 0.2072072072072072, 0.3063063063063063, 0.3063063063063063, 0.3063063063063063, 0.21621621621621623, 0.26126126126126126, 0.22522522522522523, 0.1891891891891892, 0.1891891891891892, 0.1981981981981982, 0.2072072072072072, 0.1981981981981982, 0.1891891891891892, 0.2702702702702703, 0.2702702702702703, 0.1891891891891892, 0.1891891891891892, 0.1891891891891892, 0.1891891891891892, 0.18018018018018017, 0.1891891891891892, 0.17117117117117117, 0.17117117117117117, 0.17117117117117117, 0.17117117117117117, 0.17117117117117117, 0.14414414414414414, 0.9369369369369369, 0.918918918918919, 0.14414414414414414, 0.14414414414414414, 0.14414414414414414, 0.14414414414414414, 0.14414414414414414, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.8918918918918919, 0.9369369369369369, 0.9459459459459459, 0.9459459459459459, 0.9279279279279279, 0.8648648648648649, 0.09009009009009009, 0.0990990990990991, 0.11711711711711711, 0.10810810810810811, 0.17117117117117117, 0.12612612612612611, 0.18018018018018017, 0.15315315315315314, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.09009009009009009, 0.09009009009009009, 0.09009009009009009, 0.09009009009009009, 0.08108108108108109, 0.09009009009009009, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.8558558558558559, 0.7207207207207207, 0.5945945945945946, 0.08108108108108109, 0.09009009009009009, 0.09009009009009009, 0.09009009009009009, 0.09009009009009009, 0.09009009009009009, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.2882882882882883, 0.0990990990990991, 0.07207207207207207, 0.07207207207207207, 0.09009009009009009, 0.09009009009009009, 0.09009009009009009, 0.09009009009009009, 0.13513513513513514, 0.10810810810810811, 0.11711711711711711, 0.10810810810810811, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.10810810810810811, 0.11711711711711711, 0.11711711711711711, 0.11711711711711711, 0.12612612612612611, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.17117117117117117, 0.1981981981981982, 0.22522522522522523, 0.24324324324324326, 0.2702702702702703, 0.27927927927927926, 0.3063063063063063, 0.3063063063063063, 0.36036036036036034, 0.4144144144144144, 0.44144144144144143, 0.46846846846846846, 0.4774774774774775, 0.4774774774774775, 0.4774774774774775, 0.4774774774774775, 0.4774774774774775, 0.4864864864864865, 0.4864864864864865, 0.4954954954954955, 0.7657657657657657], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cas_DxTHG.gap.json b/pfam_gap_rates/Cas_DxTHG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d96dc9a1b954a45ca68971c28ec5347656562886
--- /dev/null
+++ b/pfam_gap_rates/Cas_DxTHG.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Casc1_N.gap.json b/pfam_gap_rates/Casc1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2b93236a9736d7e5e9fe7b47b8c2973ec87115c2
--- /dev/null
+++ b/pfam_gap_rates/Casc1_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cass2.gap.json b/pfam_gap_rates/Cass2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c446af8cc6960d401465cac33b0e623178b15251
--- /dev/null
+++ b/pfam_gap_rates/Cass2.gap.json
@@ -0,0 +1 @@
+{"family": "Cass2", "n_seqs": 661, "length": 184, "gap_rates": [0.5824508320726173, 0.3767019667170953, 0.3040847201210287, 0.26626323751891073, 0.22844175491679275, 0.20574886535552195, 0.18456883509833585, 0.16187594553706505, 0.15128593040847202, 0.1437216338880484, 0.1422087745839637, 0.14069591527987896, 0.13767019667170954, 0.13767019667170954, 0.13161875945537066, 0.12859304084720122, 0.13010590015128592, 0.12556732223903178, 0.12556732223903178, 0.12405446293494705, 0.12556732223903178, 0.12556732223903178, 0.2405446293494705, 0.8335854765506808, 0.9152798789712556, 0.7881996974281392, 0.4462934947049924, 0.3812405446293495, 0.2950075642965204, 0.2344931921331316, 0.17700453857791226, 0.0832072617246596, 0.07261724659606657, 0.06202723146747353, 0.059001512859304085, 0.059001512859304085, 0.059001512859304085, 0.057488653555219364, 0.057488653555219364, 0.0529500756429652, 0.06354009077155824, 0.06202723146747353, 0.762481089258699, 0.8018154311649016, 0.6066565809379728, 0.20121028744326777, 0.12405446293494705, 0.0907715582450832, 0.12254160363086233, 0.10287443267776097, 0.9198184568835098, 0.8472012102874432, 0.13161875945537066, 0.1361573373676248, 0.06505295007564296, 0.7579425113464447, 0.9364599092284418, 0.8683812405446294, 0.6459909228441755, 0.036308623298033284, 0.03328290468986384, 0.03177004538577912, 0.030257186081694403, 0.030257186081694403, 0.025718608169440244, 0.024205748865355523, 0.0226928895612708, 0.046898638426626324, 0.04236006051437216, 0.10136157337367625, 0.09833585476550681, 0.8608169440242057, 0.9349470499243571, 0.9228441754916793, 0.5900151285930408, 0.16036308623298035, 0.07866868381240545, 0.03479576399394856, 0.028744326777609682, 0.028744326777609682, 0.019667170953101363, 0.018154311649016642, 0.01664145234493192, 0.01664145234493192, 0.019667170953101363, 0.01664145234493192, 0.015128593040847202, 0.015128593040847202, 0.01361573373676248, 0.01664145234493192, 0.2813918305597579, 0.8925869894099848, 0.17549167927382753, 0.0680786686838124, 0.048411497730711045, 0.02723146747352496, 0.019667170953101363, 0.009077155824508321, 0.007564296520423601, 0.009077155824508321, 0.01664145234493192, 0.015128593040847202, 0.007564296520423601, 0.0045385779122541605, 0.0045385779122541605, 0.0045385779122541605, 0.0030257186081694403, 0.0045385779122541605, 0.007564296520423601, 0.006051437216338881, 0.006051437216338881, 0.007564296520423601, 0.006051437216338881, 0.0045385779122541605, 0.0030257186081694403, 0.869894099848714, 0.897125567322239, 0.9440242057488654, 0.886535552193646, 0.735249621785174, 0.018154311649016642, 0.0226928895612708, 0.08472012102874432, 0.08018154311649017, 0.0832072617246596, 0.32223903177004537, 0.05446293494704992, 0.0453857791225416, 0.039334341906202726, 0.037821482602118005, 0.0226928895612708, 0.01664145234493192, 0.01361573373676248, 0.01664145234493192, 0.09833585476550681, 0.08472012102874432, 0.09531013615733737, 0.060514372163388806, 0.13918305597579425, 0.1422087745839637, 0.8774583963691377, 0.13313161875945537, 0.0680786686838124, 0.060514372163388806, 0.059001512859304085, 0.05143721633888049, 0.039334341906202726, 0.1059001512859304, 0.048411497730711045, 0.07715582450832073, 0.9409984871406959, 0.04084720121028744, 0.9425113464447806, 0.04387291981845688, 0.04236006051437216, 0.04236006051437216, 0.04387291981845688, 0.04387291981845688, 0.8290468986384266, 0.9228441754916793, 0.9394856278366112, 0.8895612708018155, 0.8033282904689864, 0.049924357034795766, 0.11497730711043873, 0.16036308623298035, 0.15582450832072617, 0.2813918305597579, 0.20574886535552195, 0.5779122541603631, 0.8532526475037822, 0.9016641452344932, 0.783661119515885, 0.5355521936459909, 0.19062027231467474, 0.17851739788199697, 0.1059001512859304, 0.09833585476550681, 0.10136157337367625, 0.1043872919818457, 0.11800302571860817, 0.13918305597579425, 0.17851739788199697, 0.25416036308623297], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ceramidase.gap.json b/pfam_gap_rates/Ceramidase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21dd52f70bd8e97332fbf398a54154ca366035c2
--- /dev/null
+++ b/pfam_gap_rates/Ceramidase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Choline_transpo.gap.json b/pfam_gap_rates/Choline_transpo.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fdd5538d1cbbde6771c16e67cee2034b3394a008
--- /dev/null
+++ b/pfam_gap_rates/Choline_transpo.gap.json
@@ -0,0 +1 @@
+{"family": "Choline_transpo", "n_seqs": 1054, "length": 404, "gap_rates": [0.6072106261859582, 0.3633776091081594, 0.29506641366223907, 0.20967741935483872, 0.1888045540796964, 0.17836812144212524, 0.17077798861480076, 0.16793168880455409, 0.16603415559772297, 0.16413662239089183, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.1603415559772296, 0.1603415559772296, 0.1603415559772296, 0.1603415559772296, 0.15844402277039848, 0.15844402277039848, 0.1555977229601518, 0.15654648956356737, 0.1555977229601518, 0.15464895635673626, 0.15464895635673626, 0.15464895635673626, 0.1527514231499051, 0.1442125237191651, 0.1432637571157495, 0.1432637571157495, 0.1432637571157495, 0.14231499051233396, 0.1413662239089184, 0.1413662239089184, 0.14041745730550284, 0.13851992409867173, 0.13946869070208728, 0.1413662239089184, 0.13851992409867173, 0.13946869070208728, 0.14041745730550284, 0.13851992409867173, 0.13851992409867173, 0.1347248576850095, 0.1347248576850095, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CoA_trans.gap.json b/pfam_gap_rates/CoA_trans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ba67380a38f995f5eceada120bc9cac77014a937
--- /dev/null
+++ b/pfam_gap_rates/CoA_trans.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cofac_haem_bdg.gap.json b/pfam_gap_rates/Cofac_haem_bdg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..becd1e76aecce7348e21af14bd0292c4711590c1
--- /dev/null
+++ b/pfam_gap_rates/Cofac_haem_bdg.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Colicin_V.gap.json b/pfam_gap_rates/Colicin_V.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f9bf23bc97b6655e93598e1eedf299c70be79ddd
--- /dev/null
+++ b/pfam_gap_rates/Colicin_V.gap.json
@@ -0,0 +1 @@
+{"family": "Colicin_V", "n_seqs": 1641, "length": 176, "gap_rates": [0.2254722730042657, 0.13223644119439365, 0.10298598415600244, 0.09689213893967093, 0.09201706276660573, 0.09140767824497258, 0.09079829372333943, 0.08897014015843997, 0.08775137111517367, 0.08653260207190737, 0.08653260207190737, 0.08531383302864107, 0.08531383302864107, 0.08226691042047532, 0.08104814137720902, 0.08104814137720902, 0.08043875685557587, 0.07921998781230957, 0.07861060329067641, 0.07800121876904327, 0.07800121876904327, 0.07678244972577697, 0.07678244972577697, 0.07617306520414381, 0.07556368068251067, 0.07495429616087751, 0.07373552711761121, 0.07373552711761121, 0.07312614259597806, 0.07312614259597806, 0.07373552711761121, 0.0725167580743449, 0.07068860450944546, 0.06886045094454601, 0.06764168190127971, 0.06764168190127971, 0.06520414381474711, 0.06459475929311395, 0.06398537477148081, 0.0627666057282145, 0.0591102985984156, 0.05423522242535039, 0.044485070079219986, 0.039000609384521635, 0.03656307129798903, 0.03717245581962218, 0.03595368677635588, 0.03473491773308958, 0.03534430225472273, 0.03656307129798903, 0.03473491773308958, 0.6812918951858623, 0.7404021937842779, 0.7629494210847044, 0.7995124923826935, 0.8135283363802559, 0.8214503351614869, 0.8287629494210847, 0.8470444850700792, 0.8555758683729433, 0.9055453991468617, 0.9402803168799513, 0.946983546617916, 0.9488117001828154, 0.947592931139549, 0.943327239488117, 0.9128580134064594, 0.8659354052407069, 0.8513101767215113, 0.8439975624619135, 0.8244972577696527, 0.8184034125533212, 0.8092626447288239, 0.7684338817794027, 0.7538086532602072, 0.7026203534430225, 0.534430225472273, 0.19987812309567338, 0.17550274223034734, 0.11151736745886655, 0.07434491163924437, 0.056063375990249846, 0.039000609384521635, 0.03534430225472273, 0.03656307129798903, 0.03656307129798903, 0.03473491773308958, 0.03717245581962218, 0.039609993906154786, 0.043266301035953685, 0.042656916514320534, 0.043266301035953685, 0.043266301035953685, 0.043875685557586835, 0.043875685557586835, 0.043875685557586835, 0.042656916514320534, 0.04204753199268738, 0.04143814747105423, 0.04082876294942109, 0.04082876294942109, 0.04143814747105423, 0.04082876294942109, 0.04082876294942109, 0.04082876294942109, 0.04082876294942109, 0.04082876294942109, 0.04082876294942109, 0.04143814747105423, 0.04143814747105423, 0.0603290676416819, 0.050578915295551495, 0.943327239488117, 0.044485070079219986, 0.043266301035953685, 0.04204753199268738, 0.04204753199268738, 0.042656916514320534, 0.04204753199268738, 0.04204753199268738, 0.04204753199268738, 0.042656916514320534, 0.04204753199268738, 0.04204753199268738, 0.04204753199268738, 0.04204753199268738, 0.042656916514320534, 0.043266301035953685, 0.043875685557586835, 0.043266301035953685, 0.043875685557586835, 0.043875685557586835, 0.044485070079219986, 0.044485070079219986, 0.044485070079219986, 0.044485070079219986, 0.044485070079219986, 0.044485070079219986, 0.044485070079219986, 0.8117001828153565, 0.044485070079219986, 0.044485070079219986, 0.04509445460085314, 0.04936014625228519, 0.04631322364411944, 0.049969530773918344, 0.05423522242535039, 0.05850091407678245, 0.05971968312004875, 0.07007921998781232, 0.08897014015843997, 0.08409506398537477, 0.09262644728823888, 0.11639244363193176, 0.8714198659354052, 0.9488117001828154, 0.9049360146252285, 0.8062157221206582, 0.14868982327848873, 0.39853747714808047, 0.13040828762949422, 0.13040828762949422, 0.1316270566727605, 0.13223644119439365, 0.13345521023765997, 0.13711151736745886, 0.14564290067032298, 0.15783059110298597, 0.1736745886654479, 0.2071907373552712, 0.2364411943936624, 0.3290676416819013, 0.45886654478976235, 0.6051188299817185, 0.7909811090798293, 0.9244363193174894], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cons_hypoth95.gap.json b/pfam_gap_rates/Cons_hypoth95.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d89ebed9830dd3a78e40186d6137dccb688794a4
--- /dev/null
+++ b/pfam_gap_rates/Cons_hypoth95.gap.json
@@ -0,0 +1 @@
+{"family": "Cons_hypoth95", "n_seqs": 2090, "length": 191, "gap_rates": [0.21052631578947367, 0.1708133971291866, 0.1645933014354067, 0.1521531100478469, 0.1583732057416268, 0.15885167464114833, 0.15885167464114833, 0.14736842105263157, 0.1339712918660287, 0.13157894736842105, 0.13110047846889952, 0.12966507177033493, 0.12822966507177033, 0.12679425837320574, 0.12488038277511962, 0.12296650717703349, 0.12248803827751197, 0.15550239234449761, 0.1598086124401914, 0.10574162679425837, 0.09712918660287082, 0.09521531100478468, 0.09425837320574162, 0.09186602870813397, 0.08995215311004785, 0.08708133971291866, 0.08660287081339713, 0.08038277511961722, 0.0799043062200957, 0.0799043062200957, 0.0799043062200957, 0.07942583732057416, 0.07894736842105263, 0.07607655502392345, 0.07129186602870813, 0.06889952153110047, 0.06794258373205742, 0.09473684210526316, 0.06985645933014355, 0.6602870813397129, 0.868421052631579, 0.9210526315789473, 0.815311004784689, 0.6435406698564593, 0.04880382775119617, 0.0354066985645933, 0.027751196172248804, 0.023923444976076555, 0.02966507177033493, 0.019617224880382776, 0.01818181818181818, 0.01770334928229665, 0.01770334928229665, 0.01770334928229665, 0.01770334928229665, 0.01770334928229665, 0.01722488038277512, 0.01722488038277512, 0.0215311004784689, 0.01818181818181818, 0.01722488038277512, 0.016267942583732056, 0.02200956937799043, 0.01770334928229665, 0.01722488038277512, 0.018660287081339714, 0.016267942583732056, 0.016267942583732056, 0.02966507177033493, 0.028229665071770334, 0.01818181818181818, 0.01674641148325359, 0.01674641148325359, 0.015789473684210527, 0.015311004784688996, 0.014832535885167464, 0.015789473684210527, 0.019617224880382776, 0.022488038277511963, 0.02057416267942584, 0.02057416267942584, 0.01818181818181818, 0.01674641148325359, 0.015789473684210527, 0.015311004784688996, 0.015311004784688996, 0.015311004784688996, 0.01770334928229665, 0.01770334928229665, 0.019138755980861243, 0.018660287081339714, 0.020095693779904306, 0.019617224880382776, 0.034928229665071774, 0.03779904306220096, 0.11626794258373206, 0.929665071770335, 0.9483253588516747, 0.8703349282296651, 0.3397129186602871, 0.12822966507177033, 0.03923444976076555, 0.028708133971291867, 0.02583732057416268, 0.02631578947368421, 0.024880382775119617, 0.02631578947368421, 0.03014354066985646, 0.029186602870813396, 0.03397129186602871, 0.03301435406698565, 0.03110047846889952, 0.04784688995215311, 0.04736842105263158, 0.0645933014354067, 0.5038277511961723, 0.49617224880382776, 0.276555023923445, 0.09138755980861243, 0.05885167464114833, 0.04401913875598086, 0.04401913875598086, 0.03732057416267943, 0.03636363636363636, 0.0354066985645933, 0.03636363636363636, 0.03827751196172249, 0.03971291866028708, 0.04019138755980861, 0.046411483253588515, 0.05741626794258373, 0.05454545454545454, 0.05645933014354067, 0.05837320574162679, 0.08468899521531101, 0.2832535885167464, 0.845933014354067, 0.5578947368421052, 0.07655502392344497, 0.07368421052631578, 0.07464114832535886, 0.07368421052631578, 0.07464114832535886, 0.07464114832535886, 0.07464114832535886, 0.0784688995215311, 0.2607655502392344, 0.24210526315789474, 0.09808612440191387, 0.09090909090909091, 0.08851674641148326, 0.08899521531100478, 0.08851674641148326, 0.0861244019138756, 0.08468899521531101, 0.08564593301435407, 0.08660287081339713, 0.08708133971291866, 0.08708133971291866, 0.08755980861244018, 0.08803827751196172, 0.11578947368421053, 0.11435406698564593, 0.11770334928229666, 0.21626794258373205, 0.14784688995215312, 0.13444976076555024, 0.1215311004784689, 0.12631578947368421, 0.19712918660287082, 0.13779904306220095, 0.1334928229665072, 0.15550239234449761, 0.1416267942583732, 0.1430622009569378, 0.13444976076555024, 0.1339712918660287, 0.13301435406698564, 0.12822966507177033, 0.15167464114832535, 0.14784688995215312, 0.13253588516746412, 0.1334928229665072, 0.1382775119617225, 0.14401913875598085, 0.15311004784688995, 0.16555023923444975, 0.18660287081339713, 0.22248803827751196, 0.4019138755980861, 0.8291866028708134], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CopD.gap.json b/pfam_gap_rates/CopD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b24e78e55a07ddc1b7e985132645fdcc4892cdf
--- /dev/null
+++ b/pfam_gap_rates/CopD.gap.json
@@ -0,0 +1 @@
+{"family": "CopD", "n_seqs": 735, "length": 115, "gap_rates": [0.5673469387755102, 0.20272108843537415, 0.10204081632653061, 0.04353741496598639, 0.031292517006802724, 0.027210884353741496, 0.02040816326530612, 0.013605442176870748, 0.00816326530612245, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.005442176870748299, 0.005442176870748299, 0.005442176870748299, 0.004081632653061225, 0.004081632653061225, 0.004081632653061225, 0.004081632653061225, 0.0027210884353741495, 0.0027210884353741495, 0.0027210884353741495, 0.047619047619047616, 0.02312925170068027, 0.00816326530612245, 0.009523809523809525, 0.11972789115646258, 0.09795918367346938, 0.8122448979591836, 0.9496598639455782, 0.8843537414965986, 0.2639455782312925, 0.04353741496598639, 0.010884353741496598, 0.004081632653061225, 0.005442176870748299, 0.01904761904761905, 0.0326530612244898, 0.9442176870748299, 0.06394557823129252, 0.027210884353741496, 0.0761904761904762, 0.07210884353741497, 0.05170068027210884, 0.036734693877551024, 0.0013605442176870747, 0.0013605442176870747, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0013605442176870747, 0.047619047619047616, 0.03945578231292517, 0.02585034013605442, 0.027210884353741496, 0.027210884353741496, 0.0380952380952381, 0.03537414965986395, 0.5755102040816327, 0.5877551020408164, 0.6231292517006802, 0.726530612244898, 0.7931972789115647, 0.9387755102040817, 0.817687074829932, 0.7782312925170068, 0.6857142857142857, 0.5605442176870749, 0.45850340136054424, 0.3360544217687075, 0.23129251700680273, 0.10748299319727891, 0.08843537414965986, 0.08707482993197278, 0.07482993197278912, 0.0761904761904762, 0.5265306122448979, 0.06802721088435375, 0.06394557823129252, 0.05714285714285714, 0.05442176870748299, 0.058503401360544216, 0.05714285714285714, 0.058503401360544216, 0.05986394557823129, 0.05986394557823129, 0.058503401360544216, 0.058503401360544216, 0.058503401360544216, 0.058503401360544216, 0.058503401360544216, 0.058503401360544216, 0.06394557823129252, 0.061224489795918366, 0.06666666666666667, 0.07482993197278912, 0.09795918367346938, 0.14285714285714285, 0.24489795918367346, 0.42448979591836733], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Costars.gap.json b/pfam_gap_rates/Costars.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbf9f231f80b9f6ea42eaae9b60faf55beb19435
--- /dev/null
+++ b/pfam_gap_rates/Costars.gap.json
@@ -0,0 +1 @@
+{"family": "Costars", "n_seqs": 198, "length": 81, "gap_rates": [0.5858585858585859, 0.13131313131313133, 0.10101010101010101, 0.08585858585858586, 0.08585858585858586, 0.08585858585858586, 0.08080808080808081, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.0707070707070707, 0.0707070707070707, 0.0707070707070707, 0.06565656565656566, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.05555555555555555, 0.9040404040404041, 0.898989898989899, 0.06565656565656566, 0.06060606060606061, 0.06565656565656566, 0.05555555555555555, 0.050505050505050504, 0.08080808080808081, 0.08080808080808081, 0.03535353535353535, 0.025252525252525252, 0.025252525252525252, 0.025252525252525252, 0.025252525252525252, 0.020202020202020204, 0.020202020202020204, 0.020202020202020204, 0.6060606060606061, 0.6060606060606061, 0.020202020202020204, 0.020202020202020204, 0.025252525252525252, 0.020202020202020204, 0.03535353535353535, 0.030303030303030304, 0.020202020202020204, 0.020202020202020204, 0.9444444444444444, 0.025252525252525252, 0.020202020202020204, 0.025252525252525252, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.025252525252525252, 0.025252525252525252, 0.025252525252525252, 0.025252525252525252, 0.025252525252525252, 0.025252525252525252, 0.025252525252525252, 0.030303030303030304, 0.030303030303030304, 0.03535353535353535, 0.03535353535353535, 0.04040404040404041, 0.04040404040404041, 0.04040404040404041, 0.04040404040404041, 0.04040404040404041, 0.04040404040404041, 0.045454545454545456, 0.050505050505050504, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.06060606060606061, 0.08585858585858586, 0.26262626262626265], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CsgG.gap.json b/pfam_gap_rates/CsgG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7f3c44d2589ed486f607e9bcd184192c3140fa14
--- /dev/null
+++ b/pfam_gap_rates/CsgG.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CutA1.gap.json b/pfam_gap_rates/CutA1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6b565049c0e50cde847a5c4cbecafad3a381de4
--- /dev/null
+++ b/pfam_gap_rates/CutA1.gap.json
@@ -0,0 +1 @@
+{"family": "CutA1", "n_seqs": 836, "length": 99, "gap_rates": [0.757177033492823, 0.20095693779904306, 0.09449760765550239, 0.08373205741626795, 0.07416267942583732, 0.07416267942583732, 0.0729665071770335, 0.0729665071770335, 0.10526315789473684, 0.06818181818181818, 0.06578947368421052, 0.0645933014354067, 0.0645933014354067, 0.06220095693779904, 0.061004784688995214, 0.05980861244019139, 0.05861244019138756, 0.05741626794258373, 0.05502392344497608, 0.05143540669856459, 0.05143540669856459, 0.04784688995215311, 0.04784688995215311, 0.04784688995215311, 0.04784688995215311, 0.04665071770334928, 0.04665071770334928, 0.045454545454545456, 0.04425837320574163, 0.0430622009569378, 0.04425837320574163, 0.041866028708133975, 0.041866028708133975, 0.28708133971291866, 0.041866028708133975, 0.041866028708133975, 0.041866028708133975, 0.041866028708133975, 0.04425837320574163, 0.04425837320574163, 0.04425837320574163, 0.03588516746411483, 0.022727272727272728, 0.023923444976076555, 0.02033492822966507, 0.019138755980861243, 0.019138755980861243, 0.02033492822966507, 0.0215311004784689, 0.0215311004784689, 0.0215311004784689, 0.025119617224880382, 0.022727272727272728, 0.0215311004784689, 0.0215311004784689, 0.025119617224880382, 0.025119617224880382, 0.02751196172248804, 0.03110047846889952, 0.02751196172248804, 0.02631578947368421, 0.02631578947368421, 0.025119617224880382, 0.025119617224880382, 0.025119617224880382, 0.025119617224880382, 0.025119617224880382, 0.025119617224880382, 0.02751196172248804, 0.02631578947368421, 0.02631578947368421, 0.025119617224880382, 0.02631578947368421, 0.02751196172248804, 0.02631578947368421, 0.028708133971291867, 0.028708133971291867, 0.02751196172248804, 0.02751196172248804, 0.02751196172248804, 0.028708133971291867, 0.03110047846889952, 0.028708133971291867, 0.028708133971291867, 0.03110047846889952, 0.03588516746411483, 0.10167464114832536, 0.06220095693779904, 0.06578947368421052, 0.06937799043062201, 0.07057416267942583, 0.0729665071770335, 0.0729665071770335, 0.0729665071770335, 0.0729665071770335, 0.07535885167464115, 0.10047846889952153, 0.24043062200956938, 0.9366028708133971], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DAHP_synth_1.gap.json b/pfam_gap_rates/DAHP_synth_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..081d845c86046626e5b1b01f357a289ba010ecf9
--- /dev/null
+++ b/pfam_gap_rates/DAHP_synth_1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DALR_2.gap.json b/pfam_gap_rates/DALR_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..57a60a8800712e2db54b46dcbb3b8fce8fe545e7
--- /dev/null
+++ b/pfam_gap_rates/DALR_2.gap.json
@@ -0,0 +1 @@
+{"family": "DALR_2", "n_seqs": 1880, "length": 74, "gap_rates": [0.38457446808510637, 0.14202127659574468, 0.052659574468085106, 0.017553191489361703, 0.009042553191489361, 0.002127659574468085, 0.002127659574468085, 0.0010638297872340426, 0.0010638297872340426, 0.0010638297872340426, 0.0010638297872340426, 0.0010638297872340426, 0.0010638297872340426, 0.0010638297872340426, 0.0005319148936170213, 0.0005319148936170213, 0.0005319148936170213, 0.0010638297872340426, 0.0010638297872340426, 0.0010638297872340426, 0.0015957446808510637, 0.0010638297872340426, 0.0026595744680851063, 0.003723404255319149, 0.009042553191489361, 0.039361702127659576, 0.038829787234042554, 0.038829787234042554, 0.6398936170212766, 0.8776595744680851, 0.9117021276595745, 0.9324468085106383, 0.9010638297872341, 0.8021276595744681, 0.5654255319148936, 0.29946808510638295, 0.23351063829787233, 0.21648936170212765, 0.1803191489361702, 0.14414893617021277, 0.9335106382978723, 0.9127659574468086, 0.11861702127659575, 0.09787234042553192, 0.06329787234042553, 0.054787234042553194, 0.05053191489361702, 0.05, 0.05585106382978723, 0.06329787234042553, 0.11170212765957446, 0.05638297872340425, 0.052127659574468084, 0.04840425531914894, 0.04627659574468085, 0.047872340425531915, 0.04680851063829787, 0.8781914893617021, 0.04893617021276596, 0.05, 0.05, 0.05159574468085106, 0.05319148936170213, 0.06329787234042553, 0.8361702127659575, 0.21382978723404256, 0.2925531914893617, 0.3670212765957447, 0.4851063829787234, 0.5462765957446809, 0.6090425531914894, 0.6776595744680851, 0.7457446808510638, 0.800531914893617], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DBR1.gap.json b/pfam_gap_rates/DBR1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5433b2857473df8f54edcb7c0d090972eda8aefe
--- /dev/null
+++ b/pfam_gap_rates/DBR1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DEP.gap.json b/pfam_gap_rates/DEP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f6b35346355f751396d81a4c1c35a03829015862
--- /dev/null
+++ b/pfam_gap_rates/DEP.gap.json
@@ -0,0 +1 @@
+{"family": "DEP", "n_seqs": 1729, "length": 89, "gap_rates": [0.6327356853672643, 0.45286292654713706, 0.4089068825910931, 0.24407171775592829, 0.2128397917871602, 0.18739155581260844, 0.17408906882591094, 0.15962984384037016, 0.14806246385193753, 0.13880855986119145, 0.8872180451127819, 0.11856564488143435, 0.0989010989010989, 0.08675534991324466, 0.07807981492192019, 0.054945054945054944, 0.04164256795835743, 0.035280508964719494, 0.03007518796992481, 0.020242914979757085, 0.015615962984384037, 0.012145748987854251, 0.009832272990167727, 0.008675534991324466, 0.009253903990746095, 0.008675534991324466, 0.009253903990746095, 0.008097165991902834, 0.006940427993059572, 0.00578368999421631, 0.006362058993637941, 0.00578368999421631, 0.045112781954887216, 0.8756506651243493, 0.9155581260844419, 0.9213418160786582, 0.924812030075188, 0.91844997108155, 0.9091960670908039, 0.6500867553499132, 0.03990746096009254, 0.008675534991324466, 0.006940427993059572, 0.03470213996529786, 0.008675534991324466, 0.006940427993059572, 0.007518796992481203, 0.008097165991902834, 0.008097165991902834, 0.008675534991324466, 0.008675534991324466, 0.009253903990746095, 0.009832272990167727, 0.009832272990167727, 0.010410641989589358, 0.010410641989589358, 0.01098901098901099, 0.012724117987275883, 0.013302486986697512, 0.013880855986119144, 0.014459224985540775, 0.015615962984384037, 0.019086176980913822, 0.02371312897628687, 0.03007518796992481, 0.03412377096587623, 0.03470213996529786, 0.04337767495662233, 0.5639097744360902, 0.8253325621746674, 0.8779641411220359, 0.8924233661075767, 0.9253903990746096, 0.9323308270676691, 0.9196067090803933, 0.8877964141122036, 0.8681318681318682, 0.7530364372469636, 0.04684788895315211, 0.055523423944476576, 0.0578368999421631, 0.058993637941006365, 0.6558704453441295, 0.17408906882591094, 0.0803932909196067, 0.08270676691729323, 0.08617698091382302, 0.1341816078658184, 0.23944476576055523], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_ligase_A_C.gap.json b/pfam_gap_rates/DNA_ligase_A_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d77d845e6a18bbdaa3d172772d487d3dc9766f11
--- /dev/null
+++ b/pfam_gap_rates/DNA_ligase_A_C.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_ligase_A_C", "n_seqs": 2035, "length": 151, "gap_rates": [0.6398034398034398, 0.23832923832923833, 0.13071253071253072, 0.05405405405405406, 0.03538083538083538, 0.029975429975429974, 0.027518427518427518, 0.02702702702702703, 0.026044226044226043, 0.02506142506142506, 0.02506142506142506, 0.02506142506142506, 0.025552825552825554, 0.02506142506142506, 0.4810810810810811, 0.8894348894348895, 0.9292383292383293, 0.8643734643734644, 0.29434889434889433, 0.023095823095823097, 0.0628992628992629, 0.013267813267813268, 0.9090909090909091, 0.9228501228501228, 0.946928746928747, 0.9375921375921376, 0.9154791154791154, 0.9066339066339066, 0.010810810810810811, 0.010810810810810811, 0.009336609336609337, 0.008353808353808353, 0.010810810810810811, 0.016216216216216217, 0.007371007371007371, 0.0068796068796068794, 0.009336609336609337, 0.07960687960687961, 0.007862407862407862, 0.0063882063882063885, 0.005896805896805897, 0.005405405405405406, 0.004422604422604423, 0.004422604422604423, 0.004914004914004914, 0.004422604422604423, 0.004422604422604423, 0.004422604422604423, 0.003931203931203931, 0.003931203931203931, 0.003931203931203931, 0.022113022113022112, 0.7066339066339067, 0.855036855036855, 0.942997542997543, 0.8230958230958231, 0.6535626535626535, 0.050614250614250615, 0.06486486486486487, 0.03341523341523341, 0.026044226044226043, 0.023095823095823097, 0.032432432432432434, 0.03587223587223587, 0.019656019656019656, 0.016216216216216217, 0.8329238329238329, 0.913022113022113, 0.9356265356265356, 0.8751842751842752, 0.7936117936117936, 0.3179361179361179, 0.284029484029484, 0.2226044226044226, 0.18820638820638821, 0.12776412776412777, 0.1312039312039312, 0.14103194103194103, 0.2914004914004914, 0.2786240786240786, 0.2697788697788698, 0.2339066339066339, 0.8968058968058968, 0.9203931203931204, 0.9395577395577396, 0.9307125307125307, 0.9095823095823096, 0.7773955773955774, 0.09041769041769042, 0.0742014742014742, 0.8987714987714988, 0.9307125307125307, 0.937100737100737, 0.9395577395577396, 0.9459459459459459, 0.9434889434889435, 0.9390663390663391, 0.9361179361179361, 0.9248157248157248, 0.8953316953316953, 0.03144963144963145, 0.027518427518427518, 0.016216216216216217, 0.012285012285012284, 0.011793611793611793, 0.012285012285012284, 0.012285012285012284, 0.8746928746928747, 0.8746928746928747, 0.012285012285012284, 0.012285012285012284, 0.012285012285012284, 0.012285012285012284, 0.015724815724815724, 0.015233415233415233, 0.013267813267813268, 0.01425061425061425, 0.018673218673218674, 0.019164619164619166, 0.09090909090909091, 0.342997542997543, 0.3415233415233415, 0.3385749385749386, 0.32825552825552823, 0.34545454545454546, 0.7085995085995086, 0.7164619164619165, 0.7213759213759213, 0.7503685503685503, 0.9464373464373464, 0.77002457002457, 0.7248157248157249, 0.7194103194103194, 0.7154791154791155, 0.6702702702702703, 0.34054054054054056, 0.020147420147420148, 0.01769041769041769, 0.01769041769041769, 0.018673218673218674, 0.019164619164619166, 0.019164619164619166, 0.9203931203931204, 0.019656019656019656, 0.021621621621621623, 0.03194103194103194, 0.043243243243243246, 0.05405405405405406, 0.057002457002457, 0.07714987714987714, 0.13316953316953317], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol_E_B.gap.json b/pfam_gap_rates/DNA_pol_E_B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6346ae077a33ef04b926aca5f4791f3e783f3dcb
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol_E_B.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DND1_DSRM.gap.json b/pfam_gap_rates/DND1_DSRM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1bed2ccc46861862c6486ca886ddc779915b1221
--- /dev/null
+++ b/pfam_gap_rates/DND1_DSRM.gap.json
@@ -0,0 +1 @@
+{"family": "DND1_DSRM", "n_seqs": 208, "length": 81, "gap_rates": [0.8894230769230769, 0.40865384615384615, 0.1346153846153846, 0.08173076923076923, 0.052884615384615384, 0.014423076923076924, 0.009615384615384616, 0.009615384615384616, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.0, 0.0, 0.004807692307692308, 0.014423076923076924, 0.052884615384615384, 0.8605769230769231, 0.014423076923076924, 0.0, 0.0, 0.0, 0.004807692307692308, 0.02403846153846154, 0.019230769230769232, 0.019230769230769232, 0.02403846153846154, 0.009615384615384616, 0.0, 0.0, 0.0, 0.0, 0.019230769230769232, 0.02403846153846154, 0.02403846153846154, 0.04326923076923077, 0.04326923076923077, 0.02403846153846154, 0.038461538461538464, 0.052884615384615384, 0.4567307692307692, 0.35096153846153844, 0.5, 0.625, 0.6009615384615384, 0.5865384615384616, 0.23557692307692307, 0.1875, 0.1875, 0.1875, 0.15865384615384615, 0.057692307692307696, 0.057692307692307696, 0.0625, 0.0625, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.0625, 0.0625, 0.07692307692307693, 0.09134615384615384, 0.5144230769230769], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DPPIV_N.gap.json b/pfam_gap_rates/DPPIV_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fcaa958625203f87d9ae146e84abc66f700cf95b
--- /dev/null
+++ b/pfam_gap_rates/DPPIV_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DSS1_SEM1.gap.json b/pfam_gap_rates/DSS1_SEM1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4925bdd810822909501bf3fdff7146c14d15ad3d
--- /dev/null
+++ b/pfam_gap_rates/DSS1_SEM1.gap.json
@@ -0,0 +1 @@
+{"family": "DSS1_SEM1", "n_seqs": 292, "length": 73, "gap_rates": [0.6335616438356164, 0.3972602739726027, 0.2089041095890411, 0.1267123287671233, 0.09931506849315068, 0.06164383561643835, 0.05136986301369863, 0.0410958904109589, 0.03424657534246575, 0.023972602739726026, 0.0273972602739726, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.017123287671232876, 0.017123287671232876, 0.010273972602739725, 0.0136986301369863, 0.023972602739726026, 0.0136986301369863, 0.8561643835616438, 0.017123287671232876, 0.017123287671232876, 0.9452054794520548, 0.017123287671232876, 0.023972602739726026, 0.02054794520547945, 0.023972602739726026, 0.023972602739726026, 0.07191780821917808, 0.13356164383561644, 0.05136986301369863, 0.3116438356164384, 0.6952054794520548, 0.7636986301369864, 0.8458904109589042, 0.8732876712328768, 0.8835616438356164, 0.886986301369863, 0.886986301369863, 0.8835616438356164, 0.8595890410958904, 0.821917808219178, 0.708904109589041, 0.5684931506849316, 0.10273972602739725, 0.0136986301369863, 0.0136986301369863, 0.017123287671232876, 0.017123287671232876, 0.017123287671232876, 0.023972602739726026, 0.023972602739726026, 0.023972602739726026, 0.023972602739726026, 0.023972602739726026, 0.023972602739726026, 0.023972602739726026, 0.023972602739726026, 0.0273972602739726, 0.023972602739726026, 0.023972602739726026, 0.023972602739726026, 0.023972602739726026, 0.0273972602739726, 0.030821917808219176, 0.030821917808219176, 0.0410958904109589, 0.10616438356164383, 0.1267123287671233, 0.136986301369863, 0.1643835616438356, 0.4143835616438356], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1013.gap.json b/pfam_gap_rates/DUF1013.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a51a6d219bc4e11c477331fcd7d7dec1725669eb
--- /dev/null
+++ b/pfam_gap_rates/DUF1013.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1013", "n_seqs": 203, "length": 140, "gap_rates": [0.014778325123152709, 0.0049261083743842365, 0.0049261083743842365, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0049261083743842365, 0.009852216748768473, 0.0049261083743842365, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009852216748768473, 0.009852216748768473, 0.0049261083743842365, 0.014778325123152709, 0.034482758620689655, 0.019704433497536946, 0.014778325123152709, 0.12315270935960591, 0.1625615763546798, 0.9359605911330049, 0.812807881773399, 0.009852216748768473, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.009852216748768473, 0.009852216748768473, 0.009852216748768473, 0.009852216748768473, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.009852216748768473, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.009852216748768473, 0.054187192118226604, 0.09852216748768473, 0.1921182266009852], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1018.gap.json b/pfam_gap_rates/DUF1018.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fe06ddeebb96ae0cf227fae79d92978b3c228c91
--- /dev/null
+++ b/pfam_gap_rates/DUF1018.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1018", "n_seqs": 159, "length": 151, "gap_rates": [0.36477987421383645, 0.2389937106918239, 0.16981132075471697, 0.11949685534591195, 0.09433962264150944, 0.08176100628930817, 0.07547169811320754, 0.06918238993710692, 0.06918238993710692, 0.06289308176100629, 0.050314465408805034, 0.0440251572327044, 0.0440251572327044, 0.0880503144654088, 0.9119496855345912, 0.031446540880503145, 0.031446540880503145, 0.031446540880503145, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.025157232704402517, 0.08176100628930817, 0.8742138364779874, 0.0440251572327044, 0.031446540880503145, 0.031446540880503145, 0.031446540880503145, 0.025157232704402517, 0.031446540880503145, 0.025157232704402517, 0.06289308176100629, 0.08176100628930817, 0.14465408805031446, 0.1761006289308176, 0.27044025157232704, 0.3522012578616352, 0.4088050314465409, 0.42138364779874216, 0.4528301886792453, 0.6666666666666666, 0.7735849056603774, 0.8364779874213837, 0.89937106918239, 0.9182389937106918, 0.9182389937106918, 0.9371069182389937, 0.949685534591195, 0.9308176100628931, 0.9182389937106918, 0.9056603773584906, 0.8867924528301887, 0.8113207547169812, 0.7232704402515723, 0.6163522012578616, 0.06289308176100629, 0.0440251572327044, 0.018867924528301886, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006289308176100629, 0.006289308176100629, 0.0880503144654088, 0.09433962264150944, 0.11320754716981132, 0.1069182389937107, 0.1761006289308176, 0.16352201257861634, 0.16981132075471697, 0.3710691823899371, 0.34591194968553457, 0.39622641509433965, 0.4088050314465409, 0.3522012578616352, 0.3270440251572327, 0.9433962264150944, 0.9433962264150944, 0.4088050314465409, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.03773584905660377, 0.018867924528301886, 0.8427672955974843, 0.8930817610062893, 0.9119496855345912, 0.9308176100628931, 0.89937106918239, 0.8930817610062893, 0.8113207547169812, 0.018867924528301886, 0.03773584905660377, 0.03773584905660377, 0.031446540880503145, 0.9119496855345912, 0.9182389937106918, 0.9182389937106918, 0.9182389937106918, 0.8805031446540881, 0.031446540880503145, 0.03773584905660377, 0.0440251572327044, 0.050314465408805034, 0.0440251572327044, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.8553459119496856, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.07547169811320754, 0.0880503144654088, 0.14465408805031446, 0.24528301886792453, 0.3710691823899371, 0.4591194968553459], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1264.gap.json b/pfam_gap_rates/DUF1264.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1a08741e7dc8bc4e775d80400df843e8dcb8541
--- /dev/null
+++ b/pfam_gap_rates/DUF1264.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1264", "n_seqs": 226, "length": 183, "gap_rates": [0.5575221238938053, 0.2610619469026549, 0.19911504424778761, 0.19469026548672566, 0.168141592920354, 0.1592920353982301, 0.14601769911504425, 0.1415929203539823, 0.13716814159292035, 0.12389380530973451, 0.12389380530973451, 0.11946902654867257, 0.11946902654867257, 0.11946902654867257, 0.11946902654867257, 0.11061946902654868, 0.10619469026548672, 0.10176991150442478, 0.10619469026548672, 0.11504424778761062, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09292035398230089, 0.09292035398230089, 0.09292035398230089, 0.09292035398230089, 0.09292035398230089, 0.09292035398230089, 0.09292035398230089, 0.08849557522123894, 0.07964601769911504, 0.084070796460177, 0.08849557522123894, 0.084070796460177, 0.07964601769911504, 0.06637168141592921, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.06637168141592921, 0.06637168141592921, 0.06637168141592921, 0.06637168141592921, 0.06637168141592921, 0.06637168141592921, 0.06637168141592921, 0.061946902654867256, 0.061946902654867256, 0.061946902654867256, 0.061946902654867256, 0.061946902654867256, 0.05752212389380531, 0.05309734513274336, 0.05309734513274336, 0.061946902654867256, 0.07079646017699115, 0.0752212389380531, 0.06637168141592921, 0.06637168141592921, 0.06637168141592921, 0.06637168141592921, 0.06637168141592921, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.0752212389380531, 0.07964601769911504, 0.07964601769911504, 0.084070796460177, 0.084070796460177, 0.084070796460177, 0.07964601769911504, 0.07964601769911504, 0.0752212389380531, 0.07079646017699115, 0.0752212389380531, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.0752212389380531, 0.0752212389380531, 0.0752212389380531, 0.6106194690265486, 0.5973451327433629, 0.5929203539823009, 0.12831858407079647, 0.9424778761061947, 0.9026548672566371, 0.0752212389380531, 0.0752212389380531, 0.07079646017699115, 0.061946902654867256, 0.06637168141592921, 0.07079646017699115, 0.06637168141592921, 0.6460176991150443, 0.6504424778761062, 0.6460176991150443, 0.6460176991150443, 0.061946902654867256, 0.061946902654867256, 0.05752212389380531, 0.05752212389380531, 0.05752212389380531, 0.05309734513274336, 0.05752212389380531, 0.05752212389380531, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05752212389380531, 0.05752212389380531, 0.061946902654867256, 0.061946902654867256, 0.061946902654867256, 0.061946902654867256, 0.061946902654867256, 0.0752212389380531, 0.915929203539823, 0.9203539823008849, 0.9203539823008849, 0.8982300884955752, 0.12389380530973451, 0.09734513274336283, 0.0752212389380531, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.084070796460177, 0.084070796460177, 0.084070796460177, 0.084070796460177, 0.07964601769911504, 0.084070796460177, 0.08849557522123894, 0.08849557522123894, 0.09292035398230089, 0.09292035398230089, 0.09734513274336283, 0.09292035398230089, 0.09734513274336283, 0.8407079646017699, 0.8362831858407079, 0.09734513274336283, 0.09734513274336283, 0.10176991150442478, 0.11061946902654868, 0.11061946902654868, 0.8451327433628318, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.11504424778761062, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.13274336283185842, 0.13716814159292035, 0.16371681415929204, 0.16371681415929204, 0.16371681415929204, 0.16371681415929204, 0.168141592920354, 0.21238938053097345, 0.3407079646017699], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF134.gap.json b/pfam_gap_rates/DUF134.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..db22cd9272a9430baa9dbab4840f4560d89e48bb
--- /dev/null
+++ b/pfam_gap_rates/DUF134.gap.json
@@ -0,0 +1 @@
+{"family": "DUF134", "n_seqs": 420, "length": 100, "gap_rates": [0.9357142857142857, 0.5857142857142857, 0.1976190476190476, 0.18333333333333332, 0.17142857142857143, 0.1619047619047619, 0.1619047619047619, 0.15476190476190477, 0.1523809523809524, 0.15, 0.15, 0.14761904761904762, 0.15, 0.13333333333333333, 0.12142857142857143, 0.1, 0.09285714285714286, 0.0880952380952381, 0.07857142857142857, 0.07857142857142857, 0.0761904761904762, 0.07380952380952381, 0.10952380952380952, 0.9261904761904762, 0.8761904761904762, 0.09761904761904762, 0.06904761904761905, 0.06666666666666667, 0.06666666666666667, 0.05476190476190476, 0.5833333333333334, 0.4857142857142857, 0.06190476190476191, 0.9142857142857143, 0.8166666666666667, 0.03333333333333333, 0.02619047619047619, 0.02142857142857143, 0.01904761904761905, 0.01904761904761905, 0.016666666666666666, 0.016666666666666666, 0.009523809523809525, 0.007142857142857143, 0.007142857142857143, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.0, 0.0, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.009523809523809525, 0.011904761904761904, 0.01904761904761905, 0.01904761904761905, 0.02619047619047619, 0.02619047619047619, 0.02619047619047619, 0.02619047619047619, 0.02619047619047619, 0.02857142857142857, 0.03571428571428571, 0.06904761904761905, 0.09761904761904762, 0.19523809523809524, 0.2619047619047619, 0.2904761904761905, 0.3142857142857143, 0.3357142857142857, 0.39285714285714285, 0.7619047619047619], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1365.gap.json b/pfam_gap_rates/DUF1365.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5269eb9d037e6e78f730c6295a5b37955acd9633
--- /dev/null
+++ b/pfam_gap_rates/DUF1365.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1471.gap.json b/pfam_gap_rates/DUF1471.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..48539244420e961494a554a95bbba5df08111931
--- /dev/null
+++ b/pfam_gap_rates/DUF1471.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1498.gap.json b/pfam_gap_rates/DUF1498.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0e85f41b30990e9a05fc1613acbf58312c68adec
--- /dev/null
+++ b/pfam_gap_rates/DUF1498.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1619.gap.json b/pfam_gap_rates/DUF1619.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5c6183a7ddd256e9ab41d319e274a96d8ee4779f
--- /dev/null
+++ b/pfam_gap_rates/DUF1619.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1684.gap.json b/pfam_gap_rates/DUF1684.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..81a67d3ec70413a7dd204f8a611dda0037bc4bce
--- /dev/null
+++ b/pfam_gap_rates/DUF1684.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1684", "n_seqs": 288, "length": 157, "gap_rates": [0.9097222222222222, 0.1840277777777778, 0.11458333333333333, 0.0763888888888889, 0.027777777777777776, 0.020833333333333332, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.1111111111111111, 0.05555555555555555, 0.024305555555555556, 0.03125, 0.020833333333333332, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.010416666666666666, 0.010416666666666666, 0.9270833333333334, 0.7048611111111112, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.013888888888888888, 0.013888888888888888, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.03819444444444445, 0.020833333333333332, 0.11805555555555555, 0.1076388888888889, 0.13541666666666666, 0.013888888888888888, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.013888888888888888, 0.013888888888888888, 0.010416666666666666, 0.04861111111111111, 0.14930555555555555, 0.7604166666666666, 0.8402777777777778, 0.8680555555555556, 0.8645833333333334, 0.8194444444444444, 0.7222222222222222, 0.4618055555555556, 0.2916666666666667, 0.1111111111111111, 0.017361111111111112, 0.010416666666666666, 0.010416666666666666, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.006944444444444444, 0.010416666666666666, 0.9027777777777778, 0.8958333333333334, 0.03819444444444445, 0.024305555555555556, 0.052083333333333336, 0.003472222222222222, 0.003472222222222222, 0.08333333333333333, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.006944444444444444, 0.017361111111111112, 0.3298611111111111, 0.6215277777777778, 0.7743055555555556, 0.8541666666666666, 0.9131944444444444, 0.8854166666666666, 0.8368055555555556, 0.7361111111111112, 0.03819444444444445, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.010416666666666666, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.1527777777777778], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1729.gap.json b/pfam_gap_rates/DUF1729.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..addde45def69315e0db5a7bb229d514cb7519f9e
--- /dev/null
+++ b/pfam_gap_rates/DUF1729.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1729", "n_seqs": 237, "length": 57, "gap_rates": [0.029535864978902954, 0.02109704641350211, 0.016877637130801686, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.012658227848101266, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.2616033755274262, 0.2616033755274262, 0.2616033755274262, 0.25738396624472576, 0.0, 0.0, 0.0, 0.004219409282700422, 0.004219409282700422, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.012658227848101266, 0.02109704641350211, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.02109704641350211], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1737.gap.json b/pfam_gap_rates/DUF1737.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..faaf2feb4e729fb35072cbf58de7eec253a4c227
--- /dev/null
+++ b/pfam_gap_rates/DUF1737.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1737", "n_seqs": 134, "length": 53, "gap_rates": [0.3880597014925373, 0.291044776119403, 0.04477611940298507, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.007462686567164179, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.014925373134328358, 0.029850746268656716, 0.029850746268656716, 0.03731343283582089, 0.03731343283582089, 0.04477611940298507, 0.31343283582089554, 0.291044776119403, 0.06716417910447761, 0.06716417910447761, 0.07462686567164178, 0.06716417910447761, 0.06716417910447761, 0.06716417910447761, 0.06716417910447761, 0.06716417910447761, 0.08208955223880597, 0.26119402985074625, 0.417910447761194], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF179.gap.json b/pfam_gap_rates/DUF179.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b031a578dbcdc247760b4461897c1518dd1bfb3d
--- /dev/null
+++ b/pfam_gap_rates/DUF179.gap.json
@@ -0,0 +1 @@
+{"family": "DUF179", "n_seqs": 1073, "length": 196, "gap_rates": [0.3504193849021435, 0.3299161230195713, 0.2506989748369059, 0.23112767940354148, 0.19105312208760486, 0.14911463187325255, 0.09506057781919851, 0.08480894687791239, 0.08108108108108109, 0.07269338303821063, 0.0717614165890028, 0.06616961789375582, 0.06523765144454799, 0.06430568499534017, 0.06244175209692451, 0.06244175209692451, 0.06150978564771668, 0.06244175209692451, 0.06150978564771668, 0.9040074557315937, 0.05871388630009319, 0.05778191985088537, 0.05684995340167754, 0.05498602050326188, 0.0521901211556384, 0.05125815470643057, 0.05312208760484623, 0.05312208760484623, 0.05312208760484623, 0.05312208760484623, 0.05312208760484623, 0.05498602050326188, 0.05498602050326188, 0.7931034482758621, 0.05498602050326188, 0.05778191985088537, 0.05778191985088537, 0.05591798695246971, 0.05591798695246971, 0.05498602050326188, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.06710158434296365, 0.4762348555452004, 0.1043802423112768, 0.08201304753028892, 0.07082945013979497, 0.07269338303821063, 0.11369990680335508, 0.10344827586206896, 0.15936626281453867, 0.15470643056849953, 0.1565703634669152, 0.451071761416589, 0.3448275862068966, 0.4930102516309413, 0.7744641192917054, 0.8266542404473439, 0.8825722273998136, 0.9412861136999068, 0.9450139794967382, 0.9012115563839702, 0.8667287977632805, 0.8080149114631874, 0.6421248835041938, 0.45293569431500463, 0.04007455731593663, 0.03727865796831314, 0.03727865796831314, 0.03727865796831314, 0.03727865796831314, 0.03727865796831314, 0.03727865796831314, 0.03727865796831314, 0.03727865796831314, 0.03727865796831314, 0.9459459459459459, 0.12301957129543337, 0.045666356011183594, 0.04193849021435228, 0.04007455731593663, 0.04287045666356011, 0.0521901211556384, 0.05405405405405406, 0.7623485554520038, 0.7865796831314072, 0.7800559179869525, 0.7595526561043803, 0.07269338303821063, 0.33737185461323393, 0.4678471575023299, 0.8499534016775396, 0.9170549860205033, 0.9310344827586207, 0.8918918918918919, 0.723205964585275, 0.3597390493942218, 0.33271202236719477, 0.06430568499534017, 0.07735321528424977, 0.0717614165890028, 0.06616961789375582, 0.06244175209692451, 0.06430568499534017, 0.06430568499534017, 0.0717614165890028, 0.9496738117427772, 0.045666356011183594, 0.04193849021435228, 0.03821062441752097, 0.036346691519105315, 0.9123951537744641, 0.9030754892823858, 0.0391425908667288, 0.03727865796831314, 0.03727865796831314, 0.036346691519105315, 0.032618825722273995, 0.033550792171481825, 0.02982292637465051, 0.03168685927306617, 0.035414725069897485, 0.0391425908667288, 0.7595526561043803, 0.6971109040074557, 0.09040074557315937, 0.10997204100652376, 0.048462255358807084, 0.03727865796831314, 0.035414725069897485, 0.033550792171481825, 0.03075489282385834, 0.021435228331780055, 0.8956197576887233, 0.9002795899347623, 0.9049394221808015, 0.9095992544268406, 0.9012115563839702, 0.8974836905871388, 0.8956197576887233, 0.021435228331780055, 0.02050326188257223, 0.02050326188257223, 0.02050326188257223, 0.02050326188257223, 0.02050326188257223, 0.021435228331780055, 0.022367194780987885, 0.024231127679403542, 0.023299161230195712, 0.023299161230195712, 0.023299161230195712, 0.022367194780987885, 0.024231127679403542, 0.024231127679403542, 0.024231127679403542, 0.023299161230195712, 0.024231127679403542, 0.0260950605778192, 0.0260950605778192, 0.0260950605778192, 0.028890959925442685, 0.02982292637465051, 0.02982292637465051, 0.02982292637465051, 0.03168685927306617, 0.034482758620689655, 0.0391425908667288, 0.045666356011183594, 0.32525629077353213, 0.07269338303821063, 0.07642124883504194, 0.4296365330848089, 0.09692451071761417, 0.09226467847157502, 0.10344827586206896, 0.11369990680335508, 0.2702702702702703, 0.9301025163094129, 0.9394221808014911, 0.9114631873252563, 0.1342031686859273, 0.12861136999068035, 0.12954333643988816, 0.12954333643988816, 0.13047530288909598, 0.13140726933830382, 0.13140726933830382, 0.13513513513513514, 0.13979496738117428, 0.14911463187325255, 0.15843429636533085, 0.18546132339235788, 0.2423112767940354, 0.3383038210624418], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1877.gap.json b/pfam_gap_rates/DUF1877.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dcec261ef03694cad3c6f57d9cc27faeba8af11d
--- /dev/null
+++ b/pfam_gap_rates/DUF1877.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1877", "n_seqs": 139, "length": 214, "gap_rates": [0.2589928057553957, 0.2446043165467626, 0.19424460431654678, 0.1510791366906475, 0.14388489208633093, 0.1366906474820144, 0.1223021582733813, 0.1223021582733813, 0.11510791366906475, 0.1079136690647482, 0.1079136690647482, 0.1079136690647482, 0.1079136690647482, 0.10071942446043165, 0.10071942446043165, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.10071942446043165, 0.1366906474820144, 0.12949640287769784, 0.12949640287769784, 0.1510791366906475, 0.7985611510791367, 0.8705035971223022, 0.6187050359712231, 0.16546762589928057, 0.11510791366906475, 0.11510791366906475, 0.1079136690647482, 0.12949640287769784, 0.1223021582733813, 0.8992805755395683, 0.9064748201438849, 0.9064748201438849, 0.9136690647482014, 0.9136690647482014, 0.920863309352518, 0.920863309352518, 0.920863309352518, 0.935251798561151, 0.935251798561151, 0.9424460431654677, 0.9424460431654677, 0.9496402877697842, 0.9496402877697842, 0.9424460431654677, 0.9424460431654677, 0.935251798561151, 0.935251798561151, 0.935251798561151, 0.920863309352518, 0.920863309352518, 0.9136690647482014, 0.9136690647482014, 0.9064748201438849, 0.9064748201438849, 0.8992805755395683, 0.8920863309352518, 0.17985611510791366, 0.17266187050359713, 0.14388489208633093, 0.14388489208633093, 0.1223021582733813, 0.1366906474820144, 0.1223021582733813, 0.1223021582733813, 0.18705035971223022, 0.22302158273381295, 0.26618705035971224, 0.6330935251798561, 0.5683453237410072, 0.7482014388489209, 0.8920863309352518, 0.9496402877697842, 0.9280575539568345, 0.7913669064748201, 0.7050359712230215, 0.05755395683453238, 0.05755395683453238, 0.05755395683453238, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.04316546762589928, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.04316546762589928, 0.460431654676259, 0.5755395683453237, 0.7913669064748201, 0.5179856115107914, 0.2014388489208633, 0.19424460431654678, 0.35251798561151076, 0.19424460431654678, 0.07194244604316546, 0.05755395683453238, 0.050359712230215826, 0.04316546762589928, 0.9424460431654677, 0.1510791366906475, 0.05755395683453238, 0.05755395683453238, 0.06474820143884892, 0.050359712230215826, 0.050359712230215826, 0.06474820143884892, 0.06474820143884892, 0.06474820143884892, 0.31654676258992803, 0.6187050359712231, 0.8489208633093526, 0.935251798561151, 0.7410071942446043, 0.2949640287769784, 0.17266187050359713, 0.14388489208633093, 0.07913669064748201, 0.07194244604316546, 0.05755395683453238, 0.1079136690647482, 0.05755395683453238, 0.05755395683453238, 0.06474820143884892, 0.05755395683453238, 0.05755395683453238, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.04316546762589928, 0.04316546762589928, 0.04316546762589928, 0.050359712230215826, 0.04316546762589928, 0.04316546762589928, 0.04316546762589928, 0.04316546762589928, 0.04316546762589928, 0.04316546762589928, 0.050359712230215826, 0.05755395683453238, 0.05755395683453238, 0.05755395683453238, 0.05755395683453238, 0.06474820143884892, 0.06474820143884892, 0.07194244604316546, 0.07194244604316546, 0.07913669064748201, 0.08633093525179857, 0.22302158273381295, 0.26618705035971224, 0.2517985611510791, 0.2302158273381295, 0.2158273381294964, 0.2158273381294964, 0.22302158273381295, 0.2302158273381295, 0.2014388489208633, 0.18705035971223022, 0.20863309352517986, 0.8776978417266187, 0.30935251798561153, 0.2517985611510791, 0.2158273381294964, 0.18705035971223022, 0.9136690647482014, 0.9496402877697842, 0.8705035971223022, 0.5323741007194245, 0.4676258992805755, 0.302158273381295, 0.22302158273381295, 0.1366906474820144, 0.08633093525179857, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.10071942446043165, 0.10071942446043165, 0.12949640287769784, 0.2158273381294964, 0.6402877697841727], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF192.gap.json b/pfam_gap_rates/DUF192.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5082675582a13c5952cdeea7d3720d269bdd060b
--- /dev/null
+++ b/pfam_gap_rates/DUF192.gap.json
@@ -0,0 +1 @@
+{"family": "DUF192", "n_seqs": 979, "length": 118, "gap_rates": [0.7007150153217568, 0.24616956077630234, 0.10827374872318693, 0.07865168539325842, 0.049029622063329927, 0.03983656792645557, 0.03779366700715015, 0.03779366700715015, 0.03779366700715015, 0.03677221654749745, 0.03575076608784474, 0.03472931562819203, 0.03472931562819203, 0.033707865168539325, 0.031664964249233915, 0.030643513789581207, 0.024514811031664963, 0.024514811031664963, 0.02247191011235955, 0.027579162410623085, 0.04800817160367722, 0.03881511746680286, 0.04290091930541369, 0.05720122574055159, 0.04290091930541369, 0.020429009193054137, 0.01940755873340143, 0.014300306435137897, 0.011235955056179775, 0.010214504596527068, 0.011235955056179775, 0.013278855975485188, 0.012257405515832482, 0.013278855975485188, 0.014300306435137897, 0.014300306435137897, 0.177732379979571, 0.01634320735444331, 0.017364657814096015, 0.015321756894790603, 0.012257405515832482, 0.1787538304392237, 0.177732379979571, 0.17568947906026558, 0.008171603677221655, 0.008171603677221655, 0.005107252298263534, 0.0040858018386108275, 0.0040858018386108275, 0.0040858018386108275, 0.0040858018386108275, 0.0040858018386108275, 0.0040858018386108275, 0.0040858018386108275, 0.20326864147088866, 0.011235955056179775, 0.005107252298263534, 0.006128702757916241, 0.006128702757916241, 0.006128702757916241, 0.008171603677221655, 0.009193054136874362, 0.010214504596527068, 0.011235955056179775, 0.031664964249233915, 0.05720122574055159, 0.018386108273748723, 0.2727272727272727, 0.013278855975485188, 0.01634320735444331, 0.3871297242083759, 0.5495403472931563, 0.7017364657814096, 0.8866189989785496, 0.9305413687436159, 0.7763023493360572, 0.634320735444331, 0.41470888661899896, 0.3830439223697651, 0.012257405515832482, 0.278855975485189, 0.2972420837589377, 0.35444330949948927, 0.5025536261491318, 0.7722165474974464, 0.881511746680286, 0.9274770173646578, 0.8508682328907048, 0.5097037793667007, 0.4453524004085802, 0.3299284984678243, 0.28294177732379977, 0.278855975485189, 0.020429009193054137, 0.02349336057201226, 0.015321756894790603, 0.015321756894790603, 0.015321756894790603, 0.015321756894790603, 0.017364657814096015, 0.020429009193054137, 0.02553626149131767, 0.03472931562819203, 0.03575076608784474, 0.03575076608784474, 0.05005107252298264, 0.09703779366700716, 0.08682328907048008, 0.05515832482124617, 0.05515832482124617, 0.05822267620020429, 0.06435137895812053, 0.06639427987742594, 0.07048008171603677, 0.08580183861082738, 0.11235955056179775, 0.33605720122574056, 0.8202247191011236], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2129.gap.json b/pfam_gap_rates/DUF2129.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c29e30021d1e7b28fc420121fe5816982e03f10c
--- /dev/null
+++ b/pfam_gap_rates/DUF2129.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2129", "n_seqs": 202, "length": 70, "gap_rates": [0.06435643564356436, 0.04455445544554455, 0.04455445544554455, 0.04455445544554455, 0.04455445544554455, 0.04455445544554455, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.01485148514851485, 0.0297029702970297, 0.0297029702970297, 0.034653465346534656, 0.034653465346534656, 0.04455445544554455, 0.06435643564356436, 0.14356435643564355, 0.19306930693069307], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2140.gap.json b/pfam_gap_rates/DUF2140.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d711c9f48c765dee96dd2ac0e0e97f8d3c31c535
--- /dev/null
+++ b/pfam_gap_rates/DUF2140.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2177.gap.json b/pfam_gap_rates/DUF2177.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad42af501e381cd08927bbe236759334a75dfaba
--- /dev/null
+++ b/pfam_gap_rates/DUF2177.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2177", "n_seqs": 151, "length": 130, "gap_rates": [0.8145695364238411, 0.1986754966887417, 0.07947019867549669, 0.059602649006622516, 0.033112582781456956, 0.026490066225165563, 0.019867549668874173, 0.019867549668874173, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.026490066225165563, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.013245033112582781, 0.07947019867549669, 0.8874172185430463, 0.9271523178807947, 0.9271523178807947, 0.9205298013245033, 0.8807947019867549, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.0, 0.006622516556291391, 0.006622516556291391, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.013245033112582781, 0.11258278145695365, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.046357615894039736, 0.046357615894039736, 0.052980132450331126, 0.16556291390728478, 0.9139072847682119, 0.07947019867549669, 0.046357615894039736, 0.026490066225165563, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.013245033112582781, 0.013245033112582781, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.06622516556291391, 0.2052980132450331, 0.9006622516556292], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2185.gap.json b/pfam_gap_rates/DUF2185.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..01d5dd98a03078a833c5d15ce5512fba2de29499
--- /dev/null
+++ b/pfam_gap_rates/DUF2185.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2185", "n_seqs": 119, "length": 89, "gap_rates": [0.3445378151260504, 0.09243697478991597, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.06722689075630252, 0.06722689075630252, 0.14285714285714285, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.8823529411764706, 0.9243697478991597, 0.7815126050420168, 0.058823529411764705, 0.03361344537815126, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008403361344537815, 0.008403361344537815, 0.025210084033613446, 0.008403361344537815, 0.0, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.025210084033613446, 0.04201680672268908, 0.04201680672268908, 0.05042016806722689, 0.058823529411764705, 0.08403361344537816, 0.8151260504201681, 0.1092436974789916, 0.19327731092436976, 0.23529411764705882, 0.31932773109243695, 0.3445378151260504, 0.5294117647058824, 0.8235294117647058], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2190.gap.json b/pfam_gap_rates/DUF2190.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed72c17e85edc94b7be5c9adddc0835eea6bfb64
--- /dev/null
+++ b/pfam_gap_rates/DUF2190.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2190", "n_seqs": 123, "length": 134, "gap_rates": [0.5121951219512195, 0.4634146341463415, 0.36585365853658536, 0.3333333333333333, 0.25203252032520324, 0.25203252032520324, 0.2032520325203252, 0.18699186991869918, 0.18699186991869918, 0.17886178861788618, 0.16260162601626016, 0.14634146341463414, 0.13821138211382114, 0.11382113821138211, 0.11382113821138211, 0.11382113821138211, 0.11382113821138211, 0.8617886178861789, 0.7235772357723578, 0.08943089430894309, 0.08943089430894309, 0.08943089430894309, 0.06504065040650407, 0.04065040650406504, 0.032520325203252036, 0.024390243902439025, 0.024390243902439025, 0.016260162601626018, 0.008130081300813009, 0.008130081300813009, 0.8617886178861789, 0.8699186991869918, 0.8780487804878049, 0.8861788617886179, 0.9024390243902439, 0.9024390243902439, 0.926829268292683, 0.9024390243902439, 0.8943089430894309, 0.8780487804878049, 0.8699186991869918, 0.8617886178861789, 0.8617886178861789, 0.008130081300813009, 0.8780487804878049, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.926829268292683, 0.943089430894309, 0.943089430894309, 0.926829268292683, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.0, 0.9186991869918699, 0.008130081300813009, 0.0, 0.0, 0.0, 0.0, 0.0, 0.926829268292683, 0.3252032520325203, 0.24390243902439024, 0.008130081300813009, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.04065040650406504, 0.04878048780487805, 0.0, 0.0, 0.008130081300813009, 0.024390243902439025, 0.08130081300813008, 0.06504065040650407, 0.024390243902439025, 0.016260162601626018, 0.8861788617886179, 0.8617886178861789, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.024390243902439025, 0.024390243902439025, 0.9349593495934959, 0.9105691056910569, 0.016260162601626018, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.04065040650406504, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.8943089430894309, 0.8699186991869918, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.024390243902439025, 0.056910569105691054, 0.943089430894309, 0.14634146341463414, 0.13008130081300814, 0.13008130081300814, 0.14634146341463414, 0.21951219512195122, 0.2845528455284553, 0.35772357723577236], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2276.gap.json b/pfam_gap_rates/DUF2276.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..70ec3bc7a9ae4da51bc4403a7fb57a4ad186869f
--- /dev/null
+++ b/pfam_gap_rates/DUF2276.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2276", "n_seqs": 309, "length": 194, "gap_rates": [0.3948220064724919, 0.20711974110032363, 0.0744336569579288, 0.05177993527508091, 0.025889967637540454, 0.016181229773462782, 0.012944983818770227, 0.012944983818770227, 0.012944983818770227, 0.012944983818770227, 0.3042071197411003, 0.8705501618122977, 0.8996763754045307, 0.9449838187702265, 0.9223300970873787, 0.8996763754045307, 0.8349514563106796, 0.284789644012945, 0.24271844660194175, 0.05177993527508091, 0.05177993527508091, 0.05177993527508091, 0.05177993527508091, 0.012944983818770227, 0.6796116504854369, 0.889967637540453, 0.9223300970873787, 0.7216828478964401, 0.6731391585760518, 0.012944983818770227, 0.012944983818770227, 0.012944983818770227, 0.009708737864077669, 0.009708737864077669, 0.006472491909385114, 0.006472491909385114, 0.006472491909385114, 0.006472491909385114, 0.006472491909385114, 0.006472491909385114, 0.006472491909385114, 0.006472491909385114, 0.006472491909385114, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.05177993527508091, 0.038834951456310676, 0.08090614886731391, 0.09061488673139159, 0.11974110032362459, 0.13915857605177995, 0.18122977346278318, 0.21359223300970873, 0.2524271844660194, 0.3656957928802589, 0.44660194174757284, 0.56957928802589, 0.6925566343042071, 0.7508090614886731, 0.8317152103559871, 0.8737864077669902, 0.912621359223301, 0.9288025889967637, 0.9449838187702265, 0.9223300970873787, 0.8964401294498382, 0.8478964401294499, 0.8058252427184466, 0.7216828478964401, 0.6343042071197411, 0.5080906148867314, 0.39805825242718446, 0.2912621359223301, 0.23948220064724918, 0.20388349514563106, 0.15210355987055016, 0.13268608414239483, 0.10032362459546926, 0.08737864077669903, 0.07766990291262135, 0.022653721682847898, 0.8964401294498382, 0.883495145631068, 0.883495145631068, 0.883495145631068, 0.3948220064724919, 0.43042071197411, 0.43042071197411, 0.5501618122977346, 0.6181229773462783, 0.6472491909385113, 0.7378640776699029, 0.8122977346278317, 0.8284789644012945, 0.9158576051779935, 0.9255663430420712, 0.8673139158576052, 0.8187702265372169, 0.7734627831715211, 0.6990291262135923, 0.6375404530744336, 0.6051779935275081, 0.5436893203883495, 0.43042071197411, 0.43042071197411, 0.39158576051779936, 0.5533980582524272, 0.5760517799352751, 0.0, 0.4401294498381877, 0.47896440129449835, 0.4854368932038835, 0.5210355987055016, 0.5533980582524272, 0.6245954692556634, 0.7022653721682848, 0.7799352750809061, 0.8576051779935275, 0.8867313915857605, 0.9288025889967637, 0.9449838187702265, 0.8996763754045307, 0.8640776699029126, 0.8252427184466019, 0.7249190938511327, 0.6666666666666666, 0.5922330097087378, 0.5469255663430421, 0.4919093851132686, 0.4854368932038835, 0.47896440129449835, 0.4401294498381877, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6343042071197411, 0.7475728155339806, 0.9093851132686084, 0.8446601941747572, 0.7022653721682848, 0.6310679611650486, 0.019417475728155338, 0.05501618122977346, 0.6537216828478964, 0.8964401294498382, 0.9320388349514563, 0.7572815533980582, 0.41423948220064727, 0.05177993527508091, 0.05177993527508091, 0.061488673139158574, 0.05501618122977346, 0.05825242718446602, 0.061488673139158574, 0.0, 0.8252427184466019, 0.8414239482200647, 0.9320388349514563, 0.9320388349514563, 0.9320388349514563, 0.9029126213592233, 0.8252427184466019, 0.7540453074433657, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.022653721682847898, 0.36893203883495146], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2281.gap.json b/pfam_gap_rates/DUF2281.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e17ffe808a936caff7e9cb1ca73ed7a929d3b88a
--- /dev/null
+++ b/pfam_gap_rates/DUF2281.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2281", "n_seqs": 224, "length": 75, "gap_rates": [0.71875, 0.25892857142857145, 0.23214285714285715, 0.18303571428571427, 0.15625, 0.15625, 0.15625, 0.15625, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.13839285714285715, 0.13839285714285715, 0.13839285714285715, 0.13839285714285715, 0.13839285714285715, 0.13392857142857142, 0.13392857142857142, 0.13839285714285715, 0.13839285714285715, 0.13839285714285715, 0.12946428571428573, 0.7589285714285714, 0.8839285714285714, 0.9330357142857143, 0.8303571428571429, 0.71875, 0.16071428571428573, 0.22321428571428573, 0.24107142857142858, 0.2767857142857143, 0.28125, 0.30357142857142855, 0.3080357142857143, 0.33482142857142855, 0.4107142857142857, 0.4107142857142857, 0.8214285714285714, 0.9241071428571429, 0.9241071428571429, 0.875, 0.7946428571428571, 0.45535714285714285, 0.39732142857142855, 0.39732142857142855, 0.39285714285714285, 0.39285714285714285, 0.39732142857142855, 0.41964285714285715, 0.42410714285714285, 0.4330357142857143, 0.9464285714285714, 0.59375, 0.59375, 0.5848214285714286, 0.5892857142857143, 0.4732142857142857, 0.47767857142857145, 0.5, 0.5089285714285714, 0.5089285714285714, 0.5089285714285714, 0.5178571428571429, 0.5267857142857143, 0.5491071428571429, 0.5758928571428571, 0.5982142857142857, 0.6116071428571429, 0.65625], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2284.gap.json b/pfam_gap_rates/DUF2284.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..629ff0d25b34ab32c1cf532a022a26e3a906f1e6
--- /dev/null
+++ b/pfam_gap_rates/DUF2284.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2284", "n_seqs": 234, "length": 193, "gap_rates": [0.8547008547008547, 0.48717948717948717, 0.3034188034188034, 0.25213675213675213, 0.24358974358974358, 0.21794871794871795, 0.1794871794871795, 0.15384615384615385, 0.13675213675213677, 0.11538461538461539, 0.09829059829059829, 0.0641025641025641, 0.05555555555555555, 0.038461538461538464, 0.042735042735042736, 0.038461538461538464, 0.03418803418803419, 0.029914529914529916, 0.029914529914529916, 0.23504273504273504, 0.6153846153846154, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.03418803418803419, 0.029914529914529916, 0.029914529914529916, 0.038461538461538464, 0.0811965811965812, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.02564102564102564, 0.03418803418803419, 0.029914529914529916, 0.02564102564102564, 0.02564102564102564, 0.042735042735042736, 0.19658119658119658, 0.18803418803418803, 0.18376068376068377, 0.038461538461538464, 0.03418803418803419, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.06837606837606838, 0.06837606837606838, 0.10256410256410256, 0.11538461538461539, 0.13247863247863248, 0.14102564102564102, 0.14957264957264957, 0.14102564102564102, 0.7692307692307693, 0.8076923076923077, 0.8846153846153846, 0.8888888888888888, 0.9230769230769231, 0.9230769230769231, 0.9487179487179487, 0.9401709401709402, 0.9230769230769231, 0.9188034188034188, 0.8846153846153846, 0.8461538461538461, 0.7948717948717948, 0.7478632478632479, 0.7136752136752137, 0.38461538461538464, 0.2905982905982906, 0.23504273504273504, 0.17094017094017094, 0.16666666666666666, 0.1452991452991453, 0.13247863247863248, 0.07692307692307693, 0.04700854700854701, 0.03418803418803419, 0.021367521367521368, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.021367521367521368, 0.017094017094017096, 0.021367521367521368, 0.017094017094017096, 0.05128205128205128, 0.05128205128205128, 0.03418803418803419, 0.07692307692307693, 0.042735042735042736, 0.02564102564102564, 0.05555555555555555, 0.05555555555555555, 0.21794871794871795, 0.06837606837606838, 0.042735042735042736, 0.02564102564102564, 0.021367521367521368, 0.017094017094017096, 0.01282051282051282, 0.017094017094017096, 0.01282051282051282, 0.02564102564102564, 0.02564102564102564, 0.03418803418803419, 0.8974358974358975, 0.8931623931623932, 0.03418803418803419, 0.03418803418803419, 0.029914529914529916, 0.8931623931623932, 0.8803418803418803, 0.029914529914529916, 0.8846153846153846, 0.9145299145299145, 0.8760683760683761, 0.029914529914529916, 0.029914529914529916, 0.03418803418803419, 0.03418803418803419, 0.029914529914529916, 0.9188034188034188, 0.39316239316239315, 0.23931623931623933, 0.07264957264957266, 0.9401709401709402, 0.029914529914529916, 0.029914529914529916, 0.03418803418803419, 0.038461538461538464, 0.029914529914529916, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.029914529914529916, 0.038461538461538464, 0.04700854700854701, 0.04700854700854701, 0.8162393162393162, 0.05128205128205128, 0.05128205128205128, 0.05555555555555555, 0.05982905982905983, 0.07264957264957266, 0.07692307692307693, 0.07692307692307693, 0.08547008547008547, 0.4658119658119658, 0.5555555555555556, 0.5598290598290598, 0.8205128205128205, 0.9316239316239316, 0.9188034188034188, 0.8034188034188035, 0.1794871794871795, 0.17094017094017094, 0.18376068376068377, 0.18376068376068377, 0.18376068376068377, 0.19658119658119658, 0.2222222222222222, 0.23504273504273504, 0.2905982905982906, 0.32905982905982906, 0.5512820512820513], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF243.gap.json b/pfam_gap_rates/DUF243.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d4c34e43fc8b57ed576d991b277d04658faba744
--- /dev/null
+++ b/pfam_gap_rates/DUF243.gap.json
@@ -0,0 +1 @@
+{"family": "DUF243", "n_seqs": 133, "length": 99, "gap_rates": [0.24060150375939848, 0.06015037593984962, 0.045112781954887216, 0.03759398496240601, 0.03759398496240601, 0.03759398496240601, 0.03759398496240601, 0.03759398496240601, 0.03759398496240601, 0.03759398496240601, 0.03759398496240601, 0.03759398496240601, 0.03759398496240601, 0.7593984962406015, 0.47368421052631576, 0.11278195488721804, 0.03759398496240601, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216, 0.03007518796992481, 0.022556390977443608, 0.08270676691729323, 0.045112781954887216, 0.06766917293233082, 0.23308270676691728, 0.10526315789473684, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.022556390977443608, 0.022556390977443608, 0.015037593984962405, 0.007518796992481203, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6090225563909775, 0.0, 0.0, 0.0, 0.0, 0.007518796992481203, 0.015037593984962405, 0.015037593984962405, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.6240601503759399, 0.03759398496240601, 0.022556390977443608, 0.022556390977443608, 0.03007518796992481, 0.03007518796992481, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.045112781954887216, 0.06766917293233082, 0.03007518796992481, 0.022556390977443608, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2493.gap.json b/pfam_gap_rates/DUF2493.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b1636e89e946bfd1d57dff8310709e4ce2136996
--- /dev/null
+++ b/pfam_gap_rates/DUF2493.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2493", "n_seqs": 223, "length": 72, "gap_rates": [0.3273542600896861, 0.08968609865470852, 0.04484304932735426, 0.04484304932735426, 0.04035874439461883, 0.04035874439461883, 0.04035874439461883, 0.04035874439461883, 0.11659192825112108, 0.04484304932735426, 0.04484304932735426, 0.04932735426008968, 0.04484304932735426, 0.04484304932735426, 0.07174887892376682, 0.07623318385650224, 0.05829596412556054, 0.053811659192825115, 0.04932735426008968, 0.03587443946188341, 0.02242152466367713, 0.03139013452914798, 0.03139013452914798, 0.03139013452914798, 0.03587443946188341, 0.026905829596412557, 0.026905829596412557, 0.026905829596412557, 0.02242152466367713, 0.7309417040358744, 0.9013452914798207, 0.9192825112107623, 0.9103139013452914, 0.8654708520179372, 0.13452914798206278, 0.03139013452914798, 0.013452914798206279, 0.004484304932735426, 0.0, 0.0, 0.0, 0.0, 0.0, 0.28699551569506726, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.008968609865470852, 0.008968609865470852, 0.013452914798206279, 0.017937219730941704, 0.02242152466367713, 0.017937219730941704, 0.02242152466367713, 0.02242152466367713, 0.026905829596412557, 0.05829596412556054, 0.08968609865470852, 0.1031390134529148, 0.11210762331838565, 0.2062780269058296, 0.3991031390134529], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2512.gap.json b/pfam_gap_rates/DUF2512.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e7adb03cdd40137a7a2b35357665671320fa0e61
--- /dev/null
+++ b/pfam_gap_rates/DUF2512.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2512", "n_seqs": 119, "length": 148, "gap_rates": [0.36134453781512604, 0.31092436974789917, 0.2773109243697479, 0.23529411764705882, 0.20168067226890757, 0.14285714285714285, 0.08403361344537816, 0.06722689075630252, 0.04201680672268908, 0.04201680672268908, 0.04201680672268908, 0.04201680672268908, 0.04201680672268908, 0.04201680672268908, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.01680672268907563, 0.01680672268907563, 0.008403361344537815, 0.008403361344537815, 0.01680672268907563, 0.008403361344537815, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008403361344537815, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.19327731092436976, 0.008403361344537815, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008403361344537815, 0.0, 0.0, 0.0, 0.9243697478991597, 0.9243697478991597, 0.9243697478991597, 0.9327731092436975, 0.9327731092436975, 0.9243697478991597, 0.9243697478991597, 0.9243697478991597, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008403361344537815, 0.0, 0.0, 0.008403361344537815, 0.0, 0.0, 0.4789915966386555, 0.9411764705882353, 0.15966386554621848, 0.01680672268907563, 0.0, 0.008403361344537815, 0.0, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008403361344537815, 0.008403361344537815, 0.01680672268907563, 0.05042016806722689, 0.12605042016806722, 0.2773109243697479, 0.3445378151260504, 0.3697478991596639, 0.8907563025210085, 0.9495798319327731, 0.8067226890756303, 0.47058823529411764, 0.46218487394957986, 0.4789915966386555, 0.5042016806722689, 0.5546218487394958, 0.5630252100840336, 0.6050420168067226, 0.6218487394957983, 0.6218487394957983, 0.6218487394957983, 0.6302521008403361, 0.6386554621848739, 0.6386554621848739, 0.6386554621848739, 0.6386554621848739, 0.6386554621848739, 0.6386554621848739, 0.6386554621848739, 0.6470588235294118, 0.6470588235294118, 0.6638655462184874], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF260.gap.json b/pfam_gap_rates/DUF260.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f2786bd93bb98dd2a089a47342aaa4e438bdff59
--- /dev/null
+++ b/pfam_gap_rates/DUF260.gap.json
@@ -0,0 +1 @@
+{"family": "DUF260", "n_seqs": 1008, "length": 105, "gap_rates": [0.0625, 0.04563492063492063, 0.040674603174603176, 0.03869047619047619, 0.03670634920634921, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03670634920634921, 0.034722222222222224, 0.03571428571428571, 0.03571428571428571, 0.03373015873015873, 0.03273809523809524, 0.03273809523809524, 0.031746031746031744, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.028769841269841268, 0.8373015873015873, 0.8373015873015873, 0.8373015873015873, 0.8373015873015873, 0.8353174603174603, 0.026785714285714284, 0.026785714285714284, 0.8373015873015873, 0.03373015873015873, 0.02976190476190476, 0.028769841269841268, 0.026785714285714284, 0.026785714285714284, 0.025793650793650792, 0.0248015873015873, 0.025793650793650792, 0.025793650793650792, 0.025793650793650792, 0.0248015873015873, 0.025793650793650792, 0.025793650793650792, 0.025793650793650792, 0.025793650793650792, 0.025793650793650792, 0.026785714285714284, 0.027777777777777776, 0.02976190476190476, 0.02976190476190476, 0.025793650793650792, 0.0248015873015873, 0.021825396825396824, 0.027777777777777776, 0.026785714285714284, 0.9365079365079365, 0.027777777777777776, 0.027777777777777776, 0.026785714285714284, 0.025793650793650792, 0.021825396825396824, 0.022817460317460316, 0.023809523809523808, 0.025793650793650792, 0.0248015873015873, 0.02976190476190476, 0.02976190476190476, 0.02976190476190476, 0.030753968253968252, 0.030753968253968252, 0.030753968253968252, 0.030753968253968252, 0.02976190476190476, 0.030753968253968252, 0.030753968253968252, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.03273809523809524, 0.03571428571428571, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.03571428571428571, 0.03670634920634921, 0.03869047619047619, 0.040674603174603176, 0.04265873015873016, 0.04563492063492063, 0.04662698412698413, 0.05555555555555555, 0.05853174603174603, 0.0625, 0.06448412698412699, 0.06944444444444445, 0.0763888888888889, 0.09424603174603174, 0.16964285714285715, 0.2490079365079365, 0.2867063492063492, 0.39186507936507936], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2795.gap.json b/pfam_gap_rates/DUF2795.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..acff0e93582265e168d58b1f7f4a4f2d5b8ca6cf
--- /dev/null
+++ b/pfam_gap_rates/DUF2795.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2795", "n_seqs": 321, "length": 46, "gap_rates": [0.14641744548286603, 0.102803738317757, 0.06230529595015576, 0.04672897196261682, 0.024922118380062305, 0.012461059190031152, 0.003115264797507788, 0.003115264797507788, 0.003115264797507788, 0.003115264797507788, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.012461059190031152, 0.009345794392523364, 0.0, 0.0, 0.0, 0.003115264797507788, 0.003115264797507788, 0.003115264797507788, 0.003115264797507788, 0.003115264797507788, 0.003115264797507788, 0.003115264797507788, 0.003115264797507788, 0.003115264797507788, 0.003115264797507788, 0.009345794392523364, 0.5015576323987538, 0.40186915887850466, 0.009345794392523364, 0.012461059190031152, 0.01557632398753894, 0.021806853582554516, 0.024922118380062305, 0.028037383177570093, 0.03426791277258567, 0.0529595015576324, 0.06853582554517133, 0.16822429906542055], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2808.gap.json b/pfam_gap_rates/DUF2808.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4d7e3ddd52d5eea80b53e3b32c719cfb796d56da
--- /dev/null
+++ b/pfam_gap_rates/DUF2808.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2812.gap.json b/pfam_gap_rates/DUF2812.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..706de956eac4d6314895b1d358f99260f3b4503b
--- /dev/null
+++ b/pfam_gap_rates/DUF2812.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2812", "n_seqs": 274, "length": 132, "gap_rates": [0.781021897810219, 0.572992700729927, 0.3613138686131387, 0.22992700729927007, 0.11313868613138686, 0.058394160583941604, 0.043795620437956206, 0.040145985401459854, 0.040145985401459854, 0.040145985401459854, 0.040145985401459854, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.06569343065693431, 0.040145985401459854, 0.8686131386861314, 0.6642335766423357, 0.01824817518248175, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.06569343065693431, 0.025547445255474453, 0.032846715328467155, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.8284671532846716, 0.8503649635036497, 0.8832116788321168, 0.8686131386861314, 0.8467153284671532, 0.7664233576642335, 0.5328467153284672, 0.35766423357664234, 0.2956204379562044, 0.20802919708029197, 0.06934306569343066, 0.06204379562043796, 0.058394160583941604, 0.06934306569343066, 0.05474452554744526, 0.051094890510948905, 0.051094890510948905, 0.04744525547445255, 0.04744525547445255, 0.04744525547445255, 0.043795620437956206, 0.04744525547445255, 0.04744525547445255, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.04744525547445255, 0.043795620437956206, 0.043795620437956206, 0.040145985401459854, 0.9306569343065694, 0.9306569343065694, 0.9452554744525548, 0.948905109489051, 0.9416058394160584, 0.9306569343065694, 0.9306569343065694, 0.04744525547445255, 0.058394160583941604, 0.8467153284671532, 0.9379562043795621, 0.9379562043795621, 0.7262773722627737, 0.04744525547445255, 0.04744525547445255, 0.04744525547445255, 0.051094890510948905, 0.058394160583941604, 0.05474452554744526, 0.058394160583941604, 0.9379562043795621, 0.11313868613138686, 0.08759124087591241, 0.07664233576642336, 0.07664233576642336, 0.072992700729927, 0.26277372262773724, 0.27007299270072993, 0.9087591240875912, 0.864963503649635, 0.10948905109489052, 0.11313868613138686, 0.11678832116788321, 0.11313868613138686, 0.11678832116788321, 0.11678832116788321, 0.11678832116788321, 0.12773722627737227, 0.12773722627737227, 0.13503649635036497, 0.14233576642335766, 0.15693430656934307, 0.16058394160583941, 0.16058394160583941, 0.19343065693430658, 0.9343065693430657, 0.24087591240875914, 0.2846715328467153, 0.3248175182481752, 0.39416058394160586, 0.4708029197080292, 0.5547445255474452, 0.708029197080292, 0.8284671532846716], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2851.gap.json b/pfam_gap_rates/DUF2851.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30be3d4a4cc1db61cda97e9101932df43a1e267f
--- /dev/null
+++ b/pfam_gap_rates/DUF2851.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2892.gap.json b/pfam_gap_rates/DUF2892.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ea4d8677af90274fe6a17086ca6315339d03291f
--- /dev/null
+++ b/pfam_gap_rates/DUF2892.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2892", "n_seqs": 1013, "length": 76, "gap_rates": [0.6426456071076012, 0.5725567620927937, 0.47581441263573543, 0.4570582428430405, 0.4481737413622902, 0.43928923988154, 0.23198420533070088, 0.1125370187561698, 0.09674234945705824, 0.040473840078973346, 0.02566633761105627, 0.018756169792694965, 0.017769002961500493, 0.011846001974333662, 0.007897334649555774, 0.007897334649555774, 0.007897334649555774, 0.007897334649555774, 0.007897334649555774, 0.007897334649555774, 0.007897334649555774, 0.007897334649555774, 0.007897334649555774, 0.007897334649555774, 0.006910167818361303, 0.006910167818361303, 0.005923000987166831, 0.004935834155972359, 0.16288252714708787, 0.16386969397828233, 0.18262586377097728, 0.14708785784797632, 0.5054294175715696, 0.8163869693978283, 0.9259624876604146, 0.9338598223099703, 0.8756169792694966, 0.7729516288252715, 0.36031589338598224, 0.034550839091806514, 0.024679170779861797, 0.16189536031589338, 0.10661401776900296, 0.10069101678183613, 0.09871668311944719, 0.0009871668311944718, 0.0, 0.0009871668311944718, 0.0009871668311944718, 0.0009871668311944718, 0.0019743336623889436, 0.003948667324777887, 0.004935834155972359, 0.004935834155972359, 0.004935834155972359, 0.004935834155972359, 0.004935834155972359, 0.006910167818361303, 0.011846001974333662, 0.012833168805528134, 0.013820335636722606, 0.013820335636722606, 0.01579466929911155, 0.017769002961500493, 0.0315893385982231, 0.8815399802566634, 0.08489634748272458, 0.8973346495557749, 0.9437314906219151, 0.8884501480750246, 0.36525172754195456, 0.4116485686080948, 0.4521224086870681, 0.5518262586377097, 0.6199407699901284, 0.7808489634748272], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2974.gap.json b/pfam_gap_rates/DUF2974.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13308b8c63319df7bc76ea08628c05590a08d443
--- /dev/null
+++ b/pfam_gap_rates/DUF2974.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3082.gap.json b/pfam_gap_rates/DUF3082.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f50ff25be0a7b63a92d5f90e5066dfb6a7283ba
--- /dev/null
+++ b/pfam_gap_rates/DUF3082.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3168.gap.json b/pfam_gap_rates/DUF3168.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..61ce358960c37041883319d935d918d3111c30f0
--- /dev/null
+++ b/pfam_gap_rates/DUF3168.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3168", "n_seqs": 244, "length": 132, "gap_rates": [0.4959016393442623, 0.3483606557377049, 0.3114754098360656, 0.29918032786885246, 0.26639344262295084, 0.25, 0.2459016393442623, 0.2581967213114754, 0.2459016393442623, 0.20491803278688525, 0.18032786885245902, 0.1721311475409836, 0.15163934426229508, 0.13934426229508196, 0.13934426229508196, 0.12295081967213115, 0.11885245901639344, 0.11885245901639344, 0.19262295081967212, 0.8729508196721312, 0.9385245901639344, 0.6639344262295082, 0.06557377049180328, 0.040983606557377046, 0.036885245901639344, 0.8811475409836066, 0.9262295081967213, 0.6270491803278688, 0.03278688524590164, 0.03278688524590164, 0.028688524590163935, 0.02459016393442623, 0.020491803278688523, 0.012295081967213115, 0.012295081967213115, 0.012295081967213115, 0.012295081967213115, 0.8483606557377049, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.00819672131147541, 0.004098360655737705, 0.004098360655737705, 0.00819672131147541, 0.00819672131147541, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.00819672131147541, 0.00819672131147541, 0.9385245901639344, 0.02459016393442623, 0.020491803278688523, 0.75, 0.6885245901639344, 0.01639344262295082, 0.012295081967213115, 0.00819672131147541, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9467213114754098, 0.3073770491803279, 0.2827868852459016, 0.01639344262295082, 0.01639344262295082, 0.00819672131147541, 0.00819672131147541, 0.020491803278688523, 0.012295081967213115, 0.00819672131147541, 0.012295081967213115, 0.012295081967213115, 0.012295081967213115, 0.012295081967213115, 0.012295081967213115, 0.012295081967213115, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.02459016393442623, 0.8975409836065574, 0.13524590163934427, 0.11475409836065574, 0.11885245901639344, 0.12704918032786885, 0.13524590163934427, 0.1557377049180328, 0.9221311475409836, 0.8155737704918032, 0.27459016393442626, 0.23770491803278687, 0.19672131147540983, 0.19262295081967212, 0.19262295081967212, 0.20081967213114754, 0.19262295081967212, 0.19672131147540983, 0.18442622950819673, 0.1885245901639344, 0.1885245901639344, 0.1885245901639344, 0.19672131147540983, 0.19672131147540983, 0.21311475409836064, 0.21721311475409835, 0.22131147540983606, 0.24180327868852458, 0.2459016393442623, 0.26229508196721313, 0.2786885245901639, 0.28688524590163933, 0.9426229508196722, 0.44672131147540983, 0.36885245901639346, 0.3524590163934426, 0.36065573770491804, 0.3729508196721312, 0.4016393442622951, 0.44672131147540983, 0.5, 0.6147540983606558], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3299.gap.json b/pfam_gap_rates/DUF3299.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca5e7d25f50482faa59dcd061eaaf00aa263f54a
--- /dev/null
+++ b/pfam_gap_rates/DUF3299.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3299", "n_seqs": 211, "length": 196, "gap_rates": [0.4976303317535545, 0.3696682464454976, 0.35071090047393366, 0.35071090047393366, 0.35071090047393366, 0.35071090047393366, 0.35071090047393366, 0.35071090047393366, 0.35071090047393366, 0.35071090047393366, 0.35071090047393366, 0.8483412322274881, 0.8530805687203792, 0.8578199052132701, 0.8625592417061612, 0.8672985781990521, 0.8672985781990521, 0.8720379146919431, 0.943127962085308, 0.943127962085308, 0.9478672985781991, 0.9478672985781991, 0.9478672985781991, 0.9478672985781991, 0.9478672985781991, 0.9478672985781991, 0.9478672985781991, 0.9478672985781991, 0.943127962085308, 0.943127962085308, 0.8767772511848341, 0.8720379146919431, 0.8672985781990521, 0.8625592417061612, 0.8625592417061612, 0.8530805687203792, 0.8483412322274881, 0.8483412322274881, 0.5165876777251185, 0.7962085308056872, 0.8104265402843602, 0.8530805687203792, 0.9289099526066351, 0.9478672985781991, 0.9052132701421801, 0.8199052132701422, 0.8009478672985783, 0.7867298578199052, 0.5450236966824644, 0.5355450236966824, 0.5308056872037915, 0.5023696682464455, 0.47393364928909953, 0.4549763033175355, 0.43601895734597157, 0.45023696682464454, 0.46919431279620855, 0.3886255924170616, 0.7109004739336493, 0.7440758293838863, 0.8341232227488151, 0.909952606635071, 0.9383886255924171, 0.943127962085308, 0.9241706161137441, 0.8720379146919431, 0.7725118483412322, 0.7156398104265402, 0.7061611374407583, 0.5355450236966824, 0.4928909952606635, 0.43601895734597157, 0.38388625592417064, 0.3459715639810427, 0.35071090047393366, 0.32701421800947866, 0.3127962085308057, 0.2985781990521327, 0.2843601895734597, 0.2843601895734597, 0.27488151658767773, 0.26540284360189575, 0.26540284360189575, 0.25118483412322273, 0.24170616113744076, 0.21800947867298578, 0.2037914691943128, 0.1943127962085308, 0.1848341232227488, 0.17061611374407584, 0.12322274881516587, 0.0947867298578199, 0.04739336492890995, 0.014218009478672985, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.5687203791469194, 0.16113744075829384, 0.03317535545023697, 0.018957345971563982, 0.03317535545023697, 0.06635071090047394, 0.02843601895734597, 0.023696682464454975, 0.023696682464454975, 0.004739336492890996, 0.004739336492890996, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.014218009478672985, 0.014218009478672985, 0.018957345971563982, 0.014218009478672985, 0.009478672985781991, 0.009478672985781991, 0.014218009478672985, 0.014218009478672985, 0.018957345971563982, 0.014218009478672985, 0.018957345971563982, 0.014218009478672985, 0.014218009478672985, 0.018957345971563982, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.014218009478672985, 0.943127962085308, 0.023696682464454975, 0.07109004739336493, 0.09004739336492891, 0.04739336492890995, 0.018957345971563982, 0.02843601895734597, 0.04265402843601896, 0.014218009478672985, 0.009478672985781991, 0.014218009478672985, 0.014218009478672985, 0.009478672985781991, 0.009478672985781991, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.018957345971563982, 0.061611374407582936, 0.07109004739336493, 0.0947867298578199, 0.10900473933649289, 0.15165876777251186, 0.14691943127962084, 0.15639810426540285, 0.919431279620853, 0.9241706161137441, 0.9241706161137441, 0.9146919431279621, 0.16113744075829384, 0.17061611374407584, 0.9289099526066351, 0.943127962085308, 0.919431279620853, 0.16587677725118483, 0.16587677725118483, 0.16587677725118483, 0.16587677725118483, 0.16587677725118483, 0.16587677725118483, 0.17535545023696683, 0.1895734597156398, 0.2037914691943128, 0.23222748815165878, 0.27488151658767773, 0.3412322274881517, 0.3791469194312796], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3307.gap.json b/pfam_gap_rates/DUF3307.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f16fc41ecb3de0cef0b310a75672701fad8a009
--- /dev/null
+++ b/pfam_gap_rates/DUF3307.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3347.gap.json b/pfam_gap_rates/DUF3347.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3fc22203d328e388c765e6961a95130761e1393f
--- /dev/null
+++ b/pfam_gap_rates/DUF3347.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3385.gap.json b/pfam_gap_rates/DUF3385.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b66c4799556a861114f822865522caaa2d8697b
--- /dev/null
+++ b/pfam_gap_rates/DUF3385.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3385", "n_seqs": 367, "length": 253, "gap_rates": [0.1989100817438692, 0.1553133514986376, 0.1444141689373297, 0.11444141689373297, 0.10899182561307902, 0.10354223433242507, 0.09536784741144415, 0.08446866485013624, 0.07901907356948229, 0.07356948228882834, 0.0681198910081744, 0.05994550408719346, 0.05449591280653951, 0.05449591280653951, 0.05449591280653951, 0.051771117166212535, 0.051771117166212535, 0.051771117166212535, 0.051771117166212535, 0.04904632152588556, 0.05722070844686648, 0.051771117166212535, 0.771117166212534, 0.07084468664850137, 0.9128065395095368, 0.04632152588555858, 0.043596730245231606, 0.043596730245231606, 0.043596730245231606, 0.043596730245231606, 0.043596730245231606, 0.043596730245231606, 0.043596730245231606, 0.043596730245231606, 0.043596730245231606, 0.043596730245231606, 0.04632152588555858, 0.04632152588555858, 0.04632152588555858, 0.043596730245231606, 0.043596730245231606, 0.04632152588555858, 0.04632152588555858, 0.04632152588555858, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3420.gap.json b/pfam_gap_rates/DUF3420.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..612cf72e5dc983af7f9984e85f769e8702ba5d9d
--- /dev/null
+++ b/pfam_gap_rates/DUF3420.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3420", "n_seqs": 122, "length": 65, "gap_rates": [0.1885245901639344, 0.18032786885245902, 0.11475409836065574, 0.11475409836065574, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.03278688524590164, 0.0, 0.00819672131147541, 0.00819672131147541, 0.2786885245901639, 0.6065573770491803, 0.860655737704918, 0.5081967213114754, 0.36885245901639346, 0.20491803278688525, 0.19672131147540983, 0.14754098360655737, 0.13934426229508196, 0.09836065573770492, 0.5901639344262295, 0.680327868852459, 0.6967213114754098, 0.7131147540983607, 0.7868852459016393, 0.8360655737704918, 0.9098360655737705, 0.9344262295081968, 0.8852459016393442, 0.7950819672131147, 0.7459016393442623, 0.7131147540983607, 0.6885245901639344, 0.6065573770491803, 0.5819672131147541, 0.1885245901639344, 0.21311475409836064, 0.18032786885245902, 0.1721311475409836, 0.16393442622950818, 0.16393442622950818, 0.16393442622950818, 0.1721311475409836, 0.18032786885245902, 0.18032786885245902, 0.18032786885245902, 0.21311475409836064], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3473.gap.json b/pfam_gap_rates/DUF3473.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9274d0a944ba0d8521ddaf5b8cc5e5702b5de21
--- /dev/null
+++ b/pfam_gap_rates/DUF3473.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3473", "n_seqs": 209, "length": 143, "gap_rates": [0.11004784688995216, 0.0861244019138756, 0.08133971291866028, 0.07655502392344497, 0.07177033492822966, 0.07177033492822966, 0.07177033492822966, 0.8277511961722488, 0.09569377990430622, 0.0861244019138756, 0.06698564593301436, 0.06220095693779904, 0.06220095693779904, 0.05741626794258373, 0.05741626794258373, 0.05741626794258373, 0.06220095693779904, 0.05741626794258373, 0.05263157894736842, 0.05263157894736842, 0.937799043062201, 0.07655502392344497, 0.06698564593301436, 0.05741626794258373, 0.0430622009569378, 0.0430622009569378, 0.06698564593301436, 0.11961722488038277, 0.5933014354066986, 0.3588516746411483, 0.2727272727272727, 0.9282296650717703, 0.9473684210526315, 0.9473684210526315, 0.8229665071770335, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.07177033492822966, 0.06698564593301436, 0.023923444976076555, 0.03349282296650718, 0.09090909090909091, 0.08133971291866028, 0.014354066985645933, 0.009569377990430622, 0.03349282296650718, 0.009569377990430622, 0.009569377990430622, 0.11483253588516747, 0.09569377990430622, 0.14354066985645933, 0.014354066985645933, 0.014354066985645933, 0.009569377990430622, 0.009569377990430622, 0.9090909090909091, 0.9090909090909091, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.0430622009569378, 0.0430622009569378, 0.06220095693779904, 0.06220095693779904, 0.5167464114832536, 0.009569377990430622, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.009569377990430622, 0.023923444976076555, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.06220095693779904, 0.019138755980861243, 0.019138755980861243, 0.019138755980861243, 0.028708133971291867, 0.023923444976076555, 0.023923444976076555, 0.14832535885167464, 0.19138755980861244, 0.023923444976076555, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.019138755980861243, 0.014354066985645933, 0.019138755980861243, 0.019138755980861243, 0.019138755980861243, 0.014354066985645933, 0.04784688995215311, 0.028708133971291867, 0.028708133971291867, 0.023923444976076555, 0.019138755980861243, 0.019138755980861243, 0.019138755980861243, 0.019138755980861243, 0.019138755980861243, 0.019138755980861243, 0.03349282296650718, 0.03349282296650718, 0.8851674641148325, 0.9425837320574163, 0.9425837320574163, 0.9090909090909091, 0.8803827751196173, 0.023923444976076555, 0.03827751196172249, 0.04784688995215311, 0.05263157894736842, 0.05741626794258373, 0.05741626794258373, 0.06220095693779904, 0.07177033492822966, 0.07177033492822966, 0.0861244019138756, 0.15311004784688995, 0.3492822966507177], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3546.gap.json b/pfam_gap_rates/DUF3546.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..633bdcd5581b5948020fa14ecd9fc338e7c43dd2
--- /dev/null
+++ b/pfam_gap_rates/DUF3546.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3546", "n_seqs": 295, "length": 113, "gap_rates": [0.4847457627118644, 0.43389830508474575, 0.423728813559322, 0.423728813559322, 0.3864406779661017, 0.2677966101694915, 0.19661016949152543, 0.1864406779661017, 0.8203389830508474, 0.13898305084745763, 0.11186440677966102, 0.1016949152542373, 0.08135593220338982, 0.0711864406779661, 0.0576271186440678, 0.05423728813559322, 0.05423728813559322, 0.04406779661016949, 0.04406779661016949, 0.04067796610169491, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03728813559322034, 0.030508474576271188, 0.02711864406779661, 0.02711864406779661, 0.02711864406779661, 0.023728813559322035, 0.023728813559322035, 0.023728813559322035, 0.023728813559322035, 0.02711864406779661, 0.023728813559322035, 0.023728813559322035, 0.023728813559322035, 0.023728813559322035, 0.023728813559322035, 0.023728813559322035, 0.020338983050847456, 0.01694915254237288, 0.023728813559322035, 0.01694915254237288, 0.023728813559322035, 0.023728813559322035, 0.023728813559322035, 0.023728813559322035, 0.9220338983050848, 0.9220338983050848, 0.023728813559322035, 0.023728813559322035, 0.023728813559322035, 0.023728813559322035, 0.023728813559322035, 0.023728813559322035, 0.02711864406779661, 0.05084745762711865, 0.030508474576271188, 0.030508474576271188, 0.030508474576271188, 0.03728813559322034, 0.03389830508474576, 0.030508474576271188, 0.030508474576271188, 0.030508474576271188, 0.030508474576271188, 0.030508474576271188, 0.030508474576271188, 0.030508474576271188, 0.030508474576271188, 0.03728813559322034, 0.03728813559322034, 0.03728813559322034, 0.03728813559322034, 0.03728813559322034, 0.04067796610169491, 0.05423728813559322, 0.05423728813559322, 0.05423728813559322, 0.06779661016949153, 0.07457627118644068, 0.0847457627118644, 0.2271186440677966, 0.28135593220338984, 0.3050847457627119, 0.3152542372881356, 0.3152542372881356, 0.576271186440678, 0.3694915254237288, 0.376271186440678, 0.3864406779661017, 0.39322033898305087, 0.43728813559322033, 0.4440677966101695, 0.4440677966101695, 0.4440677966101695, 0.45084745762711864, 0.4610169491525424, 0.4610169491525424, 0.4610169491525424, 0.4711864406779661, 0.4711864406779661, 0.47796610169491527, 0.4847457627118644, 0.488135593220339, 0.4915254237288136, 0.4915254237288136, 0.5016949152542373, 0.5220338983050847, 0.6847457627118644], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3710.gap.json b/pfam_gap_rates/DUF3710.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..04b7e8eb57449333705c1f1ea837e0f328c051e6
--- /dev/null
+++ b/pfam_gap_rates/DUF3710.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3710", "n_seqs": 211, "length": 190, "gap_rates": [0.04265402843601896, 0.03317535545023697, 0.03317535545023697, 0.03317535545023697, 0.03317535545023697, 0.9241706161137441, 0.9241706161137441, 0.03317535545023697, 0.04265402843601896, 0.04265402843601896, 0.04265402843601896, 0.037914691943127965, 0.052132701421800945, 0.04265402843601896, 0.7014218009478673, 0.8104265402843602, 0.9052132701421801, 0.943127962085308, 0.9383886255924171, 0.8767772511848341, 0.7488151658767772, 0.46919431279620855, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.023696682464454975, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.023696682464454975, 0.43601895734597157, 0.14691943127962084, 0.02843601895734597, 0.10426540284360189, 0.02843601895734597, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.05687203791469194, 0.052132701421800945, 0.04739336492890995, 0.04739336492890995, 0.014218009478672985, 0.018957345971563982, 0.023696682464454975, 0.023696682464454975, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.052132701421800945, 0.4312796208530806, 0.3791469194312796, 0.3175355450236967, 0.2796208530805687, 0.27014218009478674, 0.36018957345971564, 0.44075829383886256, 0.2985781990521327, 0.26540284360189575, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.9004739336492891, 0.014218009478672985, 0.9241706161137441, 0.9052132701421801, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.02843601895734597, 0.02843601895734597, 0.02843601895734597, 0.061611374407582936, 0.1848341232227488, 0.3744075829383886, 0.6303317535545023, 0.8625592417061612], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3801.gap.json b/pfam_gap_rates/DUF3801.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fcbbae3ccd4683826034bea723aea6addc59c89c
--- /dev/null
+++ b/pfam_gap_rates/DUF3801.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3892.gap.json b/pfam_gap_rates/DUF3892.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..943d94e6ff6aec1c3210865a487e2e7c71aa15fc
--- /dev/null
+++ b/pfam_gap_rates/DUF3892.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3892", "n_seqs": 170, "length": 100, "gap_rates": [0.5470588235294118, 0.21764705882352942, 0.18235294117647058, 0.17058823529411765, 0.16470588235294117, 0.14705882352941177, 0.12941176470588237, 0.8352941176470589, 0.7647058823529411, 0.7647058823529411, 0.7176470588235294, 0.12352941176470589, 0.052941176470588235, 0.052941176470588235, 0.041176470588235294, 0.03529411764705882, 0.03529411764705882, 0.03529411764705882, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.8705882352941177, 0.9411764705882353, 0.9235294117647059, 0.8176470588235294, 0.7529411764705882, 0.7529411764705882, 0.7411764705882353, 0.7176470588235294, 0.052941176470588235, 0.011764705882352941, 0.011764705882352941, 0.047058823529411764, 0.07058823529411765, 0.0058823529411764705, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7, 0.7058823529411765, 0.7176470588235294, 0.7235294117647059, 0.7705882352941177, 0.9, 0.7294117647058823, 0.7176470588235294, 0.711764705882353, 0.7058823529411765, 0.6823529411764706, 0.023529411764705882, 0.023529411764705882, 0.011764705882352941, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.011764705882352941, 0.023529411764705882, 0.2411764705882353, 0.9235294117647059, 0.9294117647058824, 0.9294117647058824, 0.9411764705882353, 0.9294117647058824, 0.9294117647058824, 0.9294117647058824, 0.8823529411764706, 0.07647058823529412, 0.029411764705882353, 0.023529411764705882, 0.01764705882352941, 0.023529411764705882, 0.023529411764705882, 0.029411764705882353, 0.03529411764705882, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.06470588235294118, 0.06470588235294118, 0.07647058823529412, 0.08235294117647059, 0.1, 0.11176470588235295, 0.2411764705882353], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4071.gap.json b/pfam_gap_rates/DUF4071.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c9cc1f4fa4778ae0c1a740a40b2aebbe2421dff3
--- /dev/null
+++ b/pfam_gap_rates/DUF4071.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4111.gap.json b/pfam_gap_rates/DUF4111.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..75fdbd5a2854996541a39e35193f601a8dcfa903
--- /dev/null
+++ b/pfam_gap_rates/DUF4111.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4111", "n_seqs": 163, "length": 113, "gap_rates": [0.656441717791411, 0.3496932515337423, 0.3006134969325153, 0.2883435582822086, 0.2883435582822086, 0.2822085889570552, 0.2822085889570552, 0.27607361963190186, 0.27607361963190186, 0.26993865030674846, 0.25153374233128833, 0.24539877300613497, 0.24539877300613497, 0.2392638036809816, 0.22699386503067484, 0.22699386503067484, 0.22085889570552147, 0.22085889570552147, 0.22085889570552147, 0.25766871165644173, 0.2147239263803681, 0.22085889570552147, 0.22699386503067484, 0.2085889570552147, 0.19631901840490798, 0.20245398773006135, 0.18404907975460122, 0.17791411042944785, 0.7484662576687117, 0.852760736196319, 0.8711656441717791, 0.901840490797546, 0.8895705521472392, 0.852760736196319, 0.8404907975460123, 0.7423312883435583, 0.15950920245398773, 0.147239263803681, 0.1411042944785276, 0.13496932515337423, 0.04294478527607362, 0.018404907975460124, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006134969325153374, 0.0, 0.018404907975460124, 0.147239263803681, 0.049079754601226995, 0.03067484662576687, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.018404907975460124, 0.018404907975460124, 0.018404907975460124, 0.018404907975460124, 0.03067484662576687, 0.03067484662576687, 0.03680981595092025, 0.06134969325153374, 0.06134969325153374, 0.06748466257668712, 0.06748466257668712, 0.9447852760736196, 0.9141104294478528, 0.3067484662576687, 0.26380368098159507, 0.2085889570552147, 0.19631901840490798, 0.22085889570552147, 0.2147239263803681, 0.2392638036809816, 0.25766871165644173, 0.25766871165644173, 0.294478527607362, 0.9325153374233128, 0.34355828220858897, 0.34355828220858897, 0.3128834355828221, 0.3128834355828221, 0.3312883435582822, 0.32515337423312884, 0.3312883435582822, 0.36809815950920244, 0.39263803680981596, 0.44171779141104295, 0.5030674846625767, 0.7239263803680982], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4118.gap.json b/pfam_gap_rates/DUF4118.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a5eaaed09f3f20cfc70eee4c5533ee63b6101ee3
--- /dev/null
+++ b/pfam_gap_rates/DUF4118.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4118", "n_seqs": 899, "length": 111, "gap_rates": [0.575083426028921, 0.2814238042269188, 0.15239154616240266, 0.09121245828698554, 0.060066740823136816, 0.041156840934371525, 0.028921023359288096, 0.021134593993325918, 0.01668520578420467, 0.01557285873192436, 0.01557285873192436, 0.014460511679644048, 0.014460511679644048, 0.013348164627363738, 0.012235817575083427, 0.013348164627363738, 0.013348164627363738, 0.013348164627363738, 0.05561735261401557, 0.03114571746384872, 0.05784204671857619, 0.7563959955506118, 0.027808676307007785, 0.03225806451612903, 0.9443826473859844, 0.008898776418242492, 0.9165739710789766, 0.006674082313681869, 0.006674082313681869, 0.006674082313681869, 0.0055617352614015575, 0.0055617352614015575, 0.0055617352614015575, 0.0055617352614015575, 0.0055617352614015575, 0.004449388209121246, 0.004449388209121246, 0.0033370411568409346, 0.0033370411568409346, 0.0033370411568409346, 0.0033370411568409346, 0.0033370411568409346, 0.002224694104560623, 0.002224694104560623, 0.002224694104560623, 0.7363737486095662, 0.002224694104560623, 0.002224694104560623, 0.002224694104560623, 0.0011123470522803114, 0.0011123470522803114, 0.0011123470522803114, 0.0011123470522803114, 0.0011123470522803114, 0.0011123470522803114, 0.002224694104560623, 0.0011123470522803114, 0.0011123470522803114, 0.0011123470522803114, 0.0011123470522803114, 0.002224694104560623, 0.002224694104560623, 0.0033370411568409346, 0.006674082313681869, 0.00778642936596218, 0.00778642936596218, 0.0055617352614015575, 0.008898776418242492, 0.00778642936596218, 0.008898776418242492, 0.006674082313681869, 0.0055617352614015575, 0.004449388209121246, 0.011123470522803115, 0.008898776418242492, 0.058954393770856504, 0.017797552836484983, 0.013348164627363738, 0.011123470522803115, 0.008898776418242492, 0.0055617352614015575, 0.0055617352614015575, 0.0033370411568409346, 0.0033370411568409346, 0.0033370411568409346, 0.0033370411568409346, 0.0033370411568409346, 0.0033370411568409346, 0.0033370411568409346, 0.0033370411568409346, 0.0033370411568409346, 0.0055617352614015575, 0.0055617352614015575, 0.006674082313681869, 0.006674082313681869, 0.00778642936596218, 0.00778642936596218, 0.010011123470522803, 0.010011123470522803, 0.011123470522803115, 0.013348164627363738, 0.020022246941045607, 0.025583982202447165, 0.042269187986651836, 0.05784204671857619, 0.08342602892102335, 0.11345939933259176, 0.185761957730812, 0.25361512791991103, 0.40489432703003336, 0.7474972191323693], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4129.gap.json b/pfam_gap_rates/DUF4129.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..34ed4728e3fb8c1ece81aea23eb1e3d1886b07e0
--- /dev/null
+++ b/pfam_gap_rates/DUF4129.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4129", "n_seqs": 735, "length": 74, "gap_rates": [0.46530612244897956, 0.22312925170068026, 0.16870748299319727, 0.13197278911564625, 0.10204081632653061, 0.09115646258503401, 0.08027210884353742, 0.06394557823129252, 0.050340136054421766, 0.047619047619047616, 0.047619047619047616, 0.0380952380952381, 0.617687074829932, 0.02857142857142857, 0.024489795918367346, 0.0163265306122449, 0.006802721088435374, 0.005442176870748299, 0.0027210884353741495, 0.0013605442176870747, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7863945578231293, 0.9346938775510204, 0.9047619047619048, 0.22993197278911565, 0.12789115646258503, 0.08299319727891157, 0.08979591836734693, 0.05986394557823129, 0.03537414965986395, 0.013605442176870748, 0.013605442176870748, 0.0027210884353741495, 0.0027210884353741495, 0.004081632653061225, 0.0027210884353741495, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.07891156462585033, 0.02312925170068027, 0.01904761904761905, 0.036734693877551024, 0.05170068027210884, 0.058503401360544216, 0.07482993197278912, 0.08299319727891157, 0.11564625850340136, 0.13333333333333333, 0.1619047619047619, 0.1836734693877551, 0.2054421768707483, 0.2503401360544218, 0.3047619047619048, 0.43537414965986393, 0.545578231292517, 0.7904761904761904], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4143.gap.json b/pfam_gap_rates/DUF4143.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d7abfe381766124966d7c3d1b2917dbc06580b4
--- /dev/null
+++ b/pfam_gap_rates/DUF4143.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4143", "n_seqs": 2402, "length": 183, "gap_rates": [0.8043297252289758, 0.5166527893422148, 0.40591174021648624, 0.3984179850124896, 0.3925895087427144, 0.38884263114071604, 0.38634471273938387, 0.38301415487094087, 0.3800999167360533, 0.37635303913405493, 0.417985012489592, 0.40591174021648624, 0.40466278101582015, 0.37385512073272276, 0.37968359700249793, 0.3759367194004996, 0.3759367194004996, 0.06244796003330558, 0.06328059950041633, 0.0636969192339717, 0.0636969192339717, 0.06536219816819318, 0.07327227310574522, 0.07826810990840966, 0.08992506244796003, 0.09367194004995837, 0.10241465445462115, 0.11906744379683597, 0.1315570358034971, 0.14154870940882597, 0.16611157368859283, 0.1819317235636969, 0.2019150707743547, 0.2160699417152373, 0.22939217318900915, 0.23397169025811823, 0.28309741881765194, 0.644879267277269, 0.7443796835970025, 0.8047460449625312, 0.8971690258118235, 0.757285595337219, 0.7194004995836802, 0.291007493755204, 0.24812656119900084, 0.231473771856786, 0.2218984179850125, 0.20815986677768525, 0.19275603663613655, 0.17069109075770192, 0.15445462114904246, 0.1398834304746045, 0.12323064113238967, 0.10616153205661949, 0.09825145711906745, 0.09075770191507078, 0.08118234804329726, 0.07535387177352207, 0.07285595337218984, 0.0636969192339717, 0.0636969192339717, 0.0636969192339717, 0.06244796003330558, 0.051623646960865945, 0.049125728559533725, 0.04787676935886761, 0.04829308909242298, 0.04704412989175687, 0.04579517069109076, 0.044962531223980015, 0.04454621149042465, 0.04454621149042465, 0.731473771856786, 0.7185678601165695, 0.8122398001665279, 0.7985012489592007, 0.06286427976686094, 0.04288093255620316, 0.03663613655287261, 0.034970857618651124, 0.03288925895087427, 0.03330557868442964, 0.0324729392173189, 0.03164029975020816, 0.03122398001665279, 0.02997502081598668, 0.0253955037468776, 0.02331390507910075, 0.02373022481265612, 0.02289758534554538, 0.020399666944213156, 0.019983347210657785, 0.019567027477102414, 0.019567027477102414, 0.019983347210657785, 0.02331390507910075, 0.02497918401332223, 0.029558701082431308, 0.029142381348875937, 0.029142381348875937, 0.07577019150707744, 0.06577851790174855, 0.10366361365528726, 0.0861781848459617, 0.06869275603663613, 0.10824313072439634, 0.1273938384679434, 0.16652789342214822, 0.4038301415487094, 0.3701082431307244, 0.34929225645295586, 0.3276436303080766, 0.2939217318900916, 0.7739383846794338, 0.8442964196502915, 0.8180682764363031, 0.7589508742714405, 0.26019983347210657, 0.20691090757701916, 0.029142381348875937, 0.01706910907577019, 0.012905911740216486, 0.00749375520399667, 0.007077435470441299, 0.007077435470441299, 0.007077435470441299, 0.007077435470441299, 0.007077435470441299, 0.006661115736885929, 0.006661115736885929, 0.007077435470441299, 0.00749375520399667, 0.00749375520399667, 0.00791007493755204, 0.41340549542048294, 0.6656952539550375, 0.8771856786011657, 0.5940882597835138, 0.4071606994171524, 0.40507910074937553, 0.33139050791007496, 0.18276436303080765, 0.021232306411323898, 0.01706910907577019, 0.011656952539550375, 0.011240632805995004, 0.011656952539550375, 0.012905911740216486, 0.012905911740216486, 0.011240632805995004, 0.014154870940882597, 0.16444629475437136, 0.8630308076602831, 0.9134054954204829, 0.9383846794338052, 0.9229808492922564, 0.888842631140716, 0.8592839300582847, 0.10283097418817652, 0.8547044129891757, 0.012905911740216486, 0.010407993338884263, 0.010407993338884263, 0.011240632805995004, 0.011240632805995004, 0.011240632805995004, 0.012073272273105746, 0.014154870940882597, 0.01582014987510408, 0.3684429641965029, 0.32139883430474603, 0.060366361365528726, 0.09991673605328892, 0.06577851790174855, 0.06702747710241465, 0.08368026644462948, 0.06411323896752706, 0.06869275603663613, 0.08451290591174021, 0.11240632805995004, 0.21065778517901748, 0.279766860949209, 0.670691090757702], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4239.gap.json b/pfam_gap_rates/DUF4239.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8017e03e7d907993b46c159fe628ec5a8e9acd0b
--- /dev/null
+++ b/pfam_gap_rates/DUF4239.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4239", "n_seqs": 184, "length": 227, "gap_rates": [0.8858695652173914, 0.6521739130434783, 0.5271739130434783, 0.31521739130434784, 0.266304347826087, 0.21739130434782608, 0.20652173913043478, 0.1358695652173913, 0.09782608695652174, 0.08695652173913043, 0.06521739130434782, 0.059782608695652176, 0.05434782608695652, 0.04891304347826087, 0.04891304347826087, 0.04891304347826087, 0.04891304347826087, 0.04891304347826087, 0.04891304347826087, 0.04891304347826087, 0.04891304347826087, 0.04891304347826087, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.03804347826086957, 0.03804347826086957, 0.03804347826086957, 0.03804347826086957, 0.043478260869565216, 0.043478260869565216, 0.06521739130434782, 0.043478260869565216, 0.043478260869565216, 0.059782608695652176, 0.04891304347826087, 0.04891304347826087, 0.03260869565217391, 0.1956521739130435, 0.4782608695652174, 0.266304347826087, 0.18478260869565216, 0.6358695652173914, 0.9402173913043478, 0.8804347826086957, 0.11956521739130435, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.043478260869565216, 0.043478260869565216, 0.02717391304347826, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.03804347826086957, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.907608695652174, 0.7119565217391305, 0.1358695652173913, 0.09782608695652174, 0.09239130434782608, 0.8967391304347826, 0.10869565217391304, 0.09239130434782608, 0.04891304347826087, 0.04891304347826087, 0.04891304347826087, 0.9130434782608695, 0.8369565217391305, 0.02717391304347826, 0.021739130434782608, 0.02717391304347826, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.02717391304347826, 0.021739130434782608, 0.03804347826086957, 0.03260869565217391, 0.02717391304347826, 0.02717391304347826, 0.016304347826086956, 0.016304347826086956, 0.021739130434782608, 0.021739130434782608, 0.03260869565217391, 0.021739130434782608, 0.9456521739130435, 0.8695652173913043, 0.14673913043478262, 0.09782608695652174, 0.04891304347826087, 0.02717391304347826, 0.03260869565217391, 0.03260869565217391, 0.02717391304347826, 0.016304347826086956, 0.9293478260869565, 0.9456521739130435, 0.9402173913043478, 0.9293478260869565, 0.016304347826086956, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.021739130434782608, 0.02717391304347826, 0.016304347826086956, 0.010869565217391304, 0.016304347826086956, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.02717391304347826, 0.02717391304347826, 0.021739130434782608, 0.016304347826086956, 0.016304347826086956, 0.24456521739130435, 0.059782608695652176, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.059782608695652176, 0.03804347826086957, 0.021739130434782608, 0.02717391304347826, 0.04891304347826087, 0.02717391304347826, 0.05434782608695652, 0.04891304347826087, 0.7989130434782609, 0.7771739130434783, 0.7391304347826086, 0.9402173913043478, 0.9239130434782609, 0.41847826086956524, 0.15760869565217392, 0.10869565217391304, 0.07065217391304347, 0.043478260869565216, 0.043478260869565216, 0.059782608695652176, 0.04891304347826087, 0.02717391304347826, 0.03804347826086957, 0.02717391304347826, 0.021739130434782608, 0.02717391304347826, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.03804347826086957, 0.043478260869565216, 0.04891304347826087, 0.043478260869565216, 0.532608695652174, 0.10869565217391304, 0.07065217391304347, 0.04891304347826087, 0.06521739130434782, 0.043478260869565216, 0.04891304347826087, 0.04891304347826087, 0.05434782608695652, 0.04891304347826087, 0.20108695652173914, 0.18478260869565216, 0.9293478260869565, 0.907608695652174, 0.16847826086956522, 0.09239130434782608, 0.07608695652173914, 0.07608695652173914, 0.07608695652173914, 0.08152173913043478, 0.14130434782608695, 0.20652173913043478, 0.21195652173913043, 0.22826086956521738, 0.24456521739130435, 0.2554347826086957, 0.2608695652173913, 0.2826086956521739, 0.32065217391304346, 0.5271739130434783, 0.5815217391304348, 0.6739130434782609, 0.7771739130434783, 0.8532608695652174], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4286.gap.json b/pfam_gap_rates/DUF4286.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..199f9383eb0c61fb0457b0c8377c021b37cdbec1
--- /dev/null
+++ b/pfam_gap_rates/DUF4286.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4286", "n_seqs": 145, "length": 104, "gap_rates": [0.15172413793103448, 0.05517241379310345, 0.041379310344827586, 0.027586206896551724, 0.020689655172413793, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.0, 0.0, 0.0, 0.0, 0.0, 0.20689655172413793, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.0, 0.0, 0.006896551724137931, 0.006896551724137931, 0.8275862068965517, 0.006896551724137931, 0.006896551724137931, 0.10344827586206896, 0.006896551724137931, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9379310344827586, 0.8275862068965517, 0.15172413793103448, 0.20689655172413793, 0.07586206896551724, 0.06206896551724138, 0.041379310344827586, 0.04827586206896552, 0.027586206896551724, 0.013793103448275862, 0.9379310344827586, 0.9448275862068966, 0.9379310344827586, 0.9379310344827586, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.020689655172413793, 0.013793103448275862, 0.020689655172413793, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.020689655172413793, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.020689655172413793, 0.020689655172413793, 0.04827586206896552, 0.020689655172413793, 0.027586206896551724, 0.020689655172413793, 0.06206896551724138, 0.020689655172413793, 0.020689655172413793, 0.034482758620689655, 0.041379310344827586, 0.06206896551724138, 0.06206896551724138, 0.06206896551724138, 0.06206896551724138, 0.06896551724137931, 0.08275862068965517, 0.09655172413793103, 0.10344827586206896, 0.15172413793103448, 0.6827586206896552], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4295.gap.json b/pfam_gap_rates/DUF4295.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e3f0827da313bf4fbcb0bf004837eb6e85e79861
--- /dev/null
+++ b/pfam_gap_rates/DUF4295.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4295", "n_seqs": 126, "length": 49, "gap_rates": [0.07936507936507936, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.031746031746031744, 0.007936507936507936, 0.0, 0.0, 0.5396825396825397, 0.7063492063492064, 0.1746031746031746, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007936507936507936, 0.0, 0.031746031746031744, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.023809523809523808, 0.1111111111111111], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4337.gap.json b/pfam_gap_rates/DUF4337.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..62e119c8fedbcd564c35cd84bb716b0530dc8272
--- /dev/null
+++ b/pfam_gap_rates/DUF4337.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4423.gap.json b/pfam_gap_rates/DUF4423.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96bddbaff03043fd4d8941edc7329abd663a706f
--- /dev/null
+++ b/pfam_gap_rates/DUF4423.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4423", "n_seqs": 116, "length": 175, "gap_rates": [0.8189655172413793, 0.6206896551724138, 0.4827586206896552, 0.4051724137931034, 0.3620689655172414, 0.28448275862068967, 0.22413793103448276, 0.1810344827586207, 0.14655172413793102, 0.12931034482758622, 0.1206896551724138, 0.09482758620689655, 0.08620689655172414, 0.08620689655172414, 0.06896551724137931, 0.9396551724137931, 0.0603448275862069, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.04310344827586207, 0.05172413793103448, 0.04310344827586207, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.9310344827586207, 0.9224137931034483, 0.3017241379310345, 0.034482758620689655, 0.034482758620689655, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.017241379310344827, 0.3275862068965517, 0.3275862068965517, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.13793103448275862, 0.9310344827586207, 0.21551724137931033, 0.017241379310344827, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.02586206896551724, 0.02586206896551724, 0.008620689655172414, 0.02586206896551724, 0.8879310344827587, 0.10344827586206896, 0.0603448275862069, 0.017241379310344827, 0.008620689655172414, 0.008620689655172414, 0.017241379310344827, 0.017241379310344827, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.017241379310344827, 0.017241379310344827, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.0, 0.0, 0.0, 0.0, 0.1724137931034483, 0.008620689655172414, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008620689655172414, 0.04310344827586207, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9482758620689655, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9482758620689655, 0.853448275862069, 0.23275862068965517, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.017241379310344827, 0.017241379310344827, 0.034482758620689655, 0.08620689655172414, 0.16379310344827586], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4451.gap.json b/pfam_gap_rates/DUF4451.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..16ce97739d093ad0fccc400c06c2babde1671f26
--- /dev/null
+++ b/pfam_gap_rates/DUF4451.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4451", "n_seqs": 174, "length": 159, "gap_rates": [0.7241379310344828, 0.40229885057471265, 0.15517241379310345, 0.13793103448275862, 0.12643678160919541, 0.11494252873563218, 0.10919540229885058, 0.10919540229885058, 0.10919540229885058, 0.10919540229885058, 0.10919540229885058, 0.10919540229885058, 0.8333333333333334, 0.8275862068965517, 0.8160919540229885, 0.8563218390804598, 0.8793103448275862, 0.9310344827586207, 0.896551724137931, 0.867816091954023, 0.8563218390804598, 0.09770114942528736, 0.08620689655172414, 0.08045977011494253, 0.08045977011494253, 0.06896551724137931, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.7126436781609196, 0.7241379310344828, 0.7011494252873564, 0.7528735632183908, 0.764367816091954, 0.764367816091954, 0.7413793103448276, 0.6839080459770115, 0.6954022988505747, 0.13793103448275862, 0.12643678160919541, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.028735632183908046, 0.05172413793103448, 0.05172413793103448, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.04597701149425287, 0.040229885057471264, 0.040229885057471264, 0.3218390804597701, 0.040229885057471264, 0.04597701149425287, 0.05172413793103448, 0.04597701149425287, 0.04597701149425287, 0.04597701149425287, 0.04597701149425287, 0.04597701149425287, 0.04597701149425287, 0.04597701149425287, 0.05172413793103448, 0.04597701149425287, 0.8735632183908046, 0.8735632183908046, 0.8850574712643678, 0.9195402298850575, 0.9482758620689655, 0.9367816091954023, 0.9195402298850575, 0.8793103448275862, 0.8735632183908046, 0.867816091954023, 0.14942528735632185, 0.41379310344827586, 0.42528735632183906, 0.3735632183908046, 0.21839080459770116, 0.1781609195402299, 0.1781609195402299, 0.1781609195402299, 0.1724137931034483, 0.1896551724137931, 0.20689655172413793, 0.9080459770114943, 0.9310344827586207, 0.9425287356321839, 0.9252873563218391, 0.896551724137931, 0.4425287356321839, 0.1781609195402299, 0.13218390804597702, 0.10344827586206896, 0.08620689655172414, 0.05172413793103448, 0.7413793103448276, 0.7701149425287356, 0.7413793103448276, 0.04597701149425287, 0.04597701149425287, 0.04597701149425287, 0.9022988505747126, 0.9252873563218391, 0.9252873563218391, 0.9252873563218391, 0.9252873563218391, 0.9252873563218391, 0.9252873563218391, 0.9252873563218391, 0.9022988505747126, 0.04597701149425287, 0.04597701149425287, 0.04597701149425287, 0.09195402298850575, 0.09195402298850575, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.09195402298850575, 0.10344827586206896, 0.09195402298850575, 0.07471264367816093, 0.07471264367816093, 0.08045977011494253, 0.09195402298850575, 0.14942528735632185, 0.896551724137931, 0.9425287356321839, 0.7011494252873564, 0.6666666666666666, 0.6206896551724138, 0.5459770114942529, 0.40804597701149425, 0.6666666666666666, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10919540229885058, 0.11494252873563218, 0.1206896551724138, 0.1896551724137931, 0.23563218390804597], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4485.gap.json b/pfam_gap_rates/DUF4485.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cb016f57595e5ba0b31ff5f0a553ae22427fffd1
--- /dev/null
+++ b/pfam_gap_rates/DUF4485.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4485", "n_seqs": 109, "length": 87, "gap_rates": [0.3761467889908257, 0.23853211009174313, 0.1743119266055046, 0.1743119266055046, 0.1743119266055046, 0.1743119266055046, 0.1651376146788991, 0.1651376146788991, 0.1559633027522936, 0.13761467889908258, 0.13761467889908258, 0.13761467889908258, 0.13761467889908258, 0.12844036697247707, 0.12844036697247707, 0.11926605504587157, 0.11926605504587157, 0.11926605504587157, 0.11926605504587157, 0.11926605504587157, 0.11009174311926606, 0.09174311926605505, 0.25688073394495414, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.06422018348623854, 0.11926605504587157, 0.5871559633027523, 0.8348623853211009, 0.8073394495412844, 0.11926605504587157, 0.09174311926605505, 0.06422018348623854, 0.045871559633027525, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.01834862385321101, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.01834862385321101, 0.03669724770642202, 0.027522935779816515, 0.027522935779816515, 0.03669724770642202, 0.08256880733944955, 0.8899082568807339, 0.05504587155963303, 0.045871559633027525, 0.07339449541284404, 0.11926605504587157, 0.13761467889908258, 0.21100917431192662, 0.3761467889908257, 0.7339449541284404], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4861.gap.json b/pfam_gap_rates/DUF4861.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ba3e2d09a9b345ec373ee17fb4f96a10645ee1cd
--- /dev/null
+++ b/pfam_gap_rates/DUF4861.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4861", "n_seqs": 122, "length": 468, "gap_rates": [0.4016393442622951, 0.29508196721311475, 0.28688524590163933, 0.2786885245901639, 0.2786885245901639, 0.27049180327868855, 0.27049180327868855, 0.27049180327868855, 0.27049180327868855, 0.36885245901639346, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.4098360655737705, 0.4098360655737705, 0.4098360655737705, 0.36065573770491804, 0.3442622950819672, 0.45081967213114754, 0.38524590163934425, 0.36885245901639346, 0.3114754098360656, 0.29508196721311475, 0.2786885245901639, 0.9180327868852459, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2459016393442623, 0.23770491803278687, 0.22950819672131148, 0.8934426229508197, 0.5081967213114754, 0.23770491803278687, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4994.gap.json b/pfam_gap_rates/DUF4994.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3ebfe0cf240871e2c9fbd28d37e2f628f14548ee
--- /dev/null
+++ b/pfam_gap_rates/DUF4994.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4994", "n_seqs": 154, "length": 108, "gap_rates": [0.5, 0.4675324675324675, 0.36363636363636365, 0.19480519480519481, 0.14935064935064934, 0.06493506493506493, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.948051948051948, 0.012987012987012988, 0.9415584415584416, 0.01948051948051948, 0.012987012987012988, 0.948051948051948, 0.012987012987012988, 0.9415584415584416, 0.8896103896103896, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.33116883116883117, 0.16233766233766234, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.935064935064935, 0.0, 0.006493506493506494, 0.948051948051948, 0.0, 0.006493506493506494, 0.0, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.03896103896103896, 0.03896103896103896, 0.07142857142857142, 0.8831168831168831, 0.948051948051948, 0.6753246753246753, 0.05194805194805195, 0.03896103896103896, 0.03896103896103896, 0.025974025974025976, 0.025974025974025976, 0.01948051948051948, 0.045454545454545456, 0.012987012987012988, 0.012987012987012988, 0.006493506493506494, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.025974025974025976, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.045454545454545456, 0.11038961038961038, 0.24675324675324675, 0.4090909090909091], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF525.gap.json b/pfam_gap_rates/DUF525.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a1472b63f54500d9a1ea5e145456b83ecd6c1b62
--- /dev/null
+++ b/pfam_gap_rates/DUF525.gap.json
@@ -0,0 +1 @@
+{"family": "DUF525", "n_seqs": 739, "length": 94, "gap_rates": [0.8619756427604871, 0.42354533152909335, 0.34100135317997293, 0.30581867388362655, 0.23004059539918809, 0.16238159675236807, 0.11502029769959404, 0.07577807848443843, 0.05548037889039242, 0.04194857916102842, 0.037889039242219216, 0.028416779431664412, 0.023004059539918808, 0.02165087956698241, 0.018944519621109608, 0.017591339648173207, 0.017591339648173207, 0.017591339648173207, 0.017591339648173207, 0.017591339648173207, 0.017591339648173207, 0.017591339648173207, 0.013531799729364006, 0.8755074424898511, 0.8863328822733424, 0.939106901217862, 0.9485791610284168, 0.9296346414073072, 0.8795669824086604, 0.8538565629228687, 0.013531799729364006, 0.012178619756427604, 0.012178619756427604, 0.010825439783491205, 0.009472259810554804, 0.009472259810554804, 0.009472259810554804, 0.009472259810554804, 0.009472259810554804, 0.009472259810554804, 0.009472259810554804, 0.009472259810554804, 0.010825439783491205, 0.010825439783491205, 0.010825439783491205, 0.016238159675236806, 0.014884979702300407, 0.018944519621109608, 0.018944519621109608, 0.017591339648173207, 0.009472259810554804, 0.010825439783491205, 0.018944519621109608, 0.013531799729364006, 0.012178619756427604, 0.009472259810554804, 0.009472259810554804, 0.008119079837618403, 0.006765899864682003, 0.006765899864682003, 0.008119079837618403, 0.013531799729364006, 0.014884979702300407, 0.016238159675236806, 0.016238159675236806, 0.017591339648173207, 0.017591339648173207, 0.018944519621109608, 0.8213802435723951, 0.02029769959404601, 0.02165087956698241, 0.02165087956698241, 0.02165087956698241, 0.02165087956698241, 0.02165087956698241, 0.02165087956698241, 0.02165087956698241, 0.02165087956698241, 0.02165087956698241, 0.02571041948579161, 0.02571041948579161, 0.029769959404600813, 0.029769959404600813, 0.03247631935047361, 0.03382949932341001, 0.035182679296346414, 0.037889039242219216, 0.037889039242219216, 0.03924221921515562, 0.04194857916102842, 0.04330175913396482, 0.05142083897158322, 0.058186738836265225, 0.17050067658998647], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF572.gap.json b/pfam_gap_rates/DUF572.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..03aeca01f3b0e398da6f4fdf990ae57f012ce984
--- /dev/null
+++ b/pfam_gap_rates/DUF572.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF805.gap.json b/pfam_gap_rates/DUF805.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..43db2fb3a7d879de15b6bd2f6a3b339e44041210
--- /dev/null
+++ b/pfam_gap_rates/DUF805.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF839.gap.json b/pfam_gap_rates/DUF839.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d940987ab0f485a508be61d5bbe9ba5fc6dde8f
--- /dev/null
+++ b/pfam_gap_rates/DUF839.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF899.gap.json b/pfam_gap_rates/DUF899.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fa5b3c060a2d44cc77940d1415ddd3de5509f9b5
--- /dev/null
+++ b/pfam_gap_rates/DUF899.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF951.gap.json b/pfam_gap_rates/DUF951.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f568b1b624bc234d95cd715dd92a581e3341673
--- /dev/null
+++ b/pfam_gap_rates/DUF951.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF952.gap.json b/pfam_gap_rates/DUF952.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..892da28cb9578d8180f0998071e2b8123ff8a42f
--- /dev/null
+++ b/pfam_gap_rates/DUF952.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Dala_Dala_lig_C.gap.json b/pfam_gap_rates/Dala_Dala_lig_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..68a1f9e21baa2036e90db6f95bc8726240a89277
--- /dev/null
+++ b/pfam_gap_rates/Dala_Dala_lig_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DbpA.gap.json b/pfam_gap_rates/DbpA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..318abbcb354814de374bf078ea08a6e8d5ff6659
--- /dev/null
+++ b/pfam_gap_rates/DbpA.gap.json
@@ -0,0 +1 @@
+{"family": "DbpA", "n_seqs": 1385, "length": 72, "gap_rates": [0.21010830324909746, 0.03537906137184116, 0.018050541516245487, 0.01227436823104693, 0.008664259927797834, 0.007942238267148015, 0.006498194945848376, 0.006498194945848376, 0.005776173285198556, 0.005054151624548736, 0.005054151624548736, 0.002888086642599278, 0.001444043321299639, 0.001444043321299639, 0.001444043321299639, 0.0007220216606498195, 0.0007220216606498195, 0.0007220216606498195, 0.0007220216606498195, 0.0007220216606498195, 0.0007220216606498195, 0.0007220216606498195, 0.0007220216606498195, 0.0007220216606498195, 0.007220216606498195, 0.0021660649819494585, 0.007220216606498195, 0.0021660649819494585, 0.0036101083032490976, 0.01444043321299639, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0007220216606498195, 0.0007220216606498195, 0.001444043321299639, 0.001444043321299639, 0.001444043321299639, 0.001444043321299639, 0.001444043321299639, 0.001444043321299639, 0.0021660649819494585, 0.002888086642599278, 0.0036101083032490976, 0.0036101083032490976, 0.004332129963898917, 0.007220216606498195, 0.005776173285198556, 0.007942238267148015, 0.012996389891696752, 0.01516245487364621, 0.018772563176895306, 0.022382671480144403, 0.036101083032490974, 0.05270758122743682, 0.06859205776173286, 0.08231046931407943, 0.09675090252707581, 0.096028880866426, 0.10252707581227437, 0.10541516245487365, 0.11191335740072202, 0.12851985559566786, 0.15162454873646208, 0.17906137184115523, 0.3003610108303249, 0.8794223826714801], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DcpS.gap.json b/pfam_gap_rates/DcpS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..81f5dc60777ba37bc710bde0dba5e91d72beef86
--- /dev/null
+++ b/pfam_gap_rates/DcpS.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DcuA_DcuB.gap.json b/pfam_gap_rates/DcuA_DcuB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0dac0b066c01cc3a4ad51a98ae8dd8faec536cf4
--- /dev/null
+++ b/pfam_gap_rates/DcuA_DcuB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Dodecin.gap.json b/pfam_gap_rates/Dodecin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e3be80b48abb709dcf3e02683693d0d2943388d
--- /dev/null
+++ b/pfam_gap_rates/Dodecin.gap.json
@@ -0,0 +1 @@
+{"family": "Dodecin", "n_seqs": 441, "length": 64, "gap_rates": [0.12698412698412698, 0.04308390022675737, 0.027210884353741496, 0.018140589569160998, 0.015873015873015872, 0.015873015873015872, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.02040816326530612, 0.013605442176870748, 0.02040816326530612, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.009070294784580499, 0.009070294784580499, 0.009070294784580499, 0.009070294784580499, 0.009070294784580499, 0.011337868480725623, 0.011337868480725623, 0.009070294784580499, 0.009070294784580499, 0.009070294784580499, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.0045351473922902496, 0.0022675736961451248, 0.0022675736961451248, 0.0022675736961451248, 0.0022675736961451248, 0.0022675736961451248, 0.0022675736961451248, 0.0022675736961451248, 0.0022675736961451248, 0.0022675736961451248, 0.0022675736961451248, 0.0022675736961451248, 0.006802721088435374, 0.0045351473922902496, 0.0022675736961451248, 0.0045351473922902496, 0.006802721088435374, 0.0045351473922902496, 0.015873015873015872, 0.0045351473922902496, 0.0045351473922902496, 0.0045351473922902496, 0.0045351473922902496, 0.0045351473922902496, 0.006802721088435374, 0.006802721088435374, 0.009070294784580499, 0.011337868480725623, 0.034013605442176874, 0.06575963718820861, 0.31519274376417233], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Drc1-Sld2.gap.json b/pfam_gap_rates/Drc1-Sld2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0eaa930da15a4bd7cc42be65367d1ecc0e476890
--- /dev/null
+++ b/pfam_gap_rates/Drc1-Sld2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Dzip-like_N.gap.json b/pfam_gap_rates/Dzip-like_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..73f5045294095abae279124c8e0d558ea29ba1bd
--- /dev/null
+++ b/pfam_gap_rates/Dzip-like_N.gap.json
@@ -0,0 +1 @@
+{"family": "Dzip-like_N", "n_seqs": 153, "length": 121, "gap_rates": [0.3333333333333333, 0.30718954248366015, 0.28104575163398693, 0.2679738562091503, 0.24183006535947713, 0.20915032679738563, 0.1568627450980392, 0.11764705882352941, 0.11764705882352941, 0.10457516339869281, 0.0915032679738562, 0.0915032679738562, 0.0915032679738562, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.08496732026143791, 0.08496732026143791, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.08496732026143791, 0.058823529411764705, 0.0457516339869281, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.0196078431372549, 0.026143790849673203, 0.0196078431372549, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.0196078431372549, 0.0196078431372549, 0.026143790849673203, 0.032679738562091505, 0.026143790849673203, 0.05228758169934641, 0.026143790849673203, 0.058823529411764705, 0.738562091503268, 0.7450980392156863, 0.7320261437908496, 0.05228758169934641, 0.032679738562091505, 0.013071895424836602, 0.0196078431372549, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.013071895424836602, 0.006535947712418301, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006535947712418301, 0.013071895424836602, 0.0196078431372549, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0457516339869281, 0.05228758169934641, 0.0457516339869281, 0.0457516339869281, 0.05228758169934641, 0.05228758169934641, 0.06535947712418301, 0.06535947712418301, 0.06535947712418301, 0.06535947712418301, 0.06535947712418301, 0.06535947712418301, 0.06535947712418301, 0.06535947712418301, 0.06535947712418301, 0.06535947712418301, 0.06535947712418301, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0915032679738562, 0.09803921568627451, 0.09803921568627451, 0.1111111111111111, 0.11764705882352941, 0.12418300653594772, 0.13071895424836602, 0.1437908496732026, 0.1503267973856209, 0.17647058823529413, 0.1895424836601307, 0.24183006535947713, 0.2679738562091503, 0.27450980392156865, 0.2875816993464052, 0.35947712418300654, 0.43137254901960786, 0.5686274509803921], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EB.gap.json b/pfam_gap_rates/EB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30f206501543f74c43808ee0c1deb59a5b685840
--- /dev/null
+++ b/pfam_gap_rates/EB.gap.json
@@ -0,0 +1 @@
+{"family": "EB", "n_seqs": 1180, "length": 72, "gap_rates": [0.49915254237288137, 0.48898305084745763, 0.4576271186440678, 0.4194915254237288, 0.37966101694915255, 0.3550847457627119, 0.32372881355932204, 0.2923728813559322, 0.25084745762711863, 0.19661016949152543, 0.17457627118644067, 0.16186440677966102, 0.1635593220338983, 0.1440677966101695, 0.10847457627118644, 0.7957627118644067, 0.8745762711864407, 0.902542372881356, 0.9355932203389831, 0.9483050847457627, 0.9220338983050848, 0.8872881355932203, 0.8508474576271187, 0.7398305084745763, 0.04152542372881356, 0.029661016949152543, 0.016101694915254237, 0.01440677966101695, 0.005932203389830509, 0.002542372881355932, 0.9135593220338983, 0.0, 0.95, 0.0, 0.000847457627118644, 0.000847457627118644, 0.000847457627118644, 0.0, 0.0, 0.7906779661016949, 0.9042372881355932, 0.8067796610169492, 0.761864406779661, 0.000847457627118644, 0.026271186440677965, 0.8440677966101695, 0.051694915254237285, 0.015254237288135594, 0.002542372881355932, 0.938135593220339, 0.9313559322033899, 0.002542372881355932, 0.9245762711864407, 0.003389830508474576, 0.011016949152542373, 0.005932203389830509, 0.006779661016949152, 0.006779661016949152, 0.00847457627118644, 0.027966101694915254, 0.027966101694915254, 0.03220338983050847, 0.036440677966101696, 0.05, 0.07203389830508475, 0.1016949152542373, 0.14915254237288136, 0.19661016949152543, 0.9330508474576271, 0.24152542372881355, 0.2796610169491525, 0.28220338983050847], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EcoR124_C.gap.json b/pfam_gap_rates/EcoR124_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9de80cc52b38be7af25470ce54082877455356ed
--- /dev/null
+++ b/pfam_gap_rates/EcoR124_C.gap.json
@@ -0,0 +1 @@
+{"family": "EcoR124_C", "n_seqs": 348, "length": 372, "gap_rates": [0.27011494252873564, 0.14655172413793102, 0.10057471264367816, 0.08620689655172414, 0.08333333333333333, 0.08045977011494253, 0.07183908045977011, 0.07183908045977011, 0.07183908045977011, 0.06896551724137931, 0.06609195402298851, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.7442528735632183, 0.7442528735632183, 0.7442528735632183, 0.7442528735632183, 0.7442528735632183, 0.8591954022988506, 0.7959770114942529, 0.7442528735632183, 0.7442528735632183, 0.7442528735632183, 0.7442528735632183, 0.7442528735632183, 0.06321839080459771, 0.06321839080459771, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.06321839080459771, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.8764367816091954, 0.882183908045977, 0.882183908045977, 0.882183908045977, 0.8793103448275862, 0.8764367816091954, 0.12931034482758622, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Endosulfine.gap.json b/pfam_gap_rates/Endosulfine.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be788a57e42c6990b2b119414cd823c023a88f24
--- /dev/null
+++ b/pfam_gap_rates/Endosulfine.gap.json
@@ -0,0 +1 @@
+{"family": "Endosulfine", "n_seqs": 370, "length": 98, "gap_rates": [0.6621621621621622, 0.5756756756756757, 0.4783783783783784, 0.4243243243243243, 0.3567567567567568, 0.23513513513513515, 0.1783783783783784, 0.12702702702702703, 0.10810810810810811, 0.10270270270270271, 0.10540540540540541, 0.0945945945945946, 0.0891891891891892, 0.07297297297297298, 0.06756756756756757, 0.05405405405405406, 0.9135135135135135, 0.9135135135135135, 0.9135135135135135, 0.04594594594594595, 0.043243243243243246, 0.043243243243243246, 0.7027027027027027, 0.043243243243243246, 0.04054054054054054, 0.04864864864864865, 0.03513513513513514, 0.8810810810810811, 0.9162162162162162, 0.8648648648648649, 0.02702702702702703, 0.02702702702702703, 0.01891891891891892, 0.01891891891891892, 0.01891891891891892, 0.013513513513513514, 0.01891891891891892, 0.3, 0.754054054054054, 0.024324324324324326, 0.010810810810810811, 0.005405405405405406, 0.005405405405405406, 0.002702702702702703, 0.002702702702702703, 0.002702702702702703, 0.002702702702702703, 0.002702702702702703, 0.002702702702702703, 0.002702702702702703, 0.002702702702702703, 0.002702702702702703, 0.002702702702702703, 0.002702702702702703, 0.008108108108108109, 0.021621621621621623, 0.3216216216216216, 0.3864864864864865, 0.3810810810810811, 0.2972972972972973, 0.8216216216216217, 0.8567567567567568, 0.9351351351351351, 0.9081081081081082, 0.8432432432432433, 0.7972972972972973, 0.06756756756756757, 0.13243243243243244, 0.13513513513513514, 0.10810810810810811, 0.12162162162162163, 0.13783783783783785, 0.13513513513513514, 0.14594594594594595, 0.10270270270270271, 0.8675675675675676, 0.9405405405405406, 0.9459459459459459, 0.9216216216216216, 0.8621621621621621, 0.11891891891891893, 0.12972972972972974, 0.13783783783783785, 0.14594594594594595, 0.15135135135135136, 0.16486486486486487, 0.1837837837837838, 0.20270270270270271, 0.21621621621621623, 0.25135135135135134, 0.3918918918918919, 0.4, 0.45135135135135135, 0.5027027027027027, 0.5675675675675675, 0.6459459459459459, 0.7648648648648648, 0.8378378378378378], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EpuA.gap.json b/pfam_gap_rates/EpuA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..735644c8ce076680e31cfbca27c68fb1099630c7
--- /dev/null
+++ b/pfam_gap_rates/EpuA.gap.json
@@ -0,0 +1 @@
+{"family": "EpuA", "n_seqs": 135, "length": 47, "gap_rates": [0.34814814814814815, 0.2814814814814815, 0.16296296296296298, 0.1259259259259259, 0.08888888888888889, 0.05925925925925926, 0.05185185185185185, 0.014814814814814815, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007407407407407408, 0.0, 0.05925925925925926, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.9111111111111111, 0.02962962962962963, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.022222222222222223, 0.6222222222222222, 0.6888888888888889], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/F1F0-ATPsyn_F.gap.json b/pfam_gap_rates/F1F0-ATPsyn_F.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0fddf8778e7c913391705feeb39747e1b20832f5
--- /dev/null
+++ b/pfam_gap_rates/F1F0-ATPsyn_F.gap.json
@@ -0,0 +1 @@
+{"family": "F1F0-ATPsyn_F", "n_seqs": 131, "length": 92, "gap_rates": [0.5725190839694656, 0.3435114503816794, 0.2900763358778626, 0.2824427480916031, 0.20610687022900764, 0.1450381679389313, 0.13740458015267176, 0.1297709923664122, 0.12213740458015267, 0.12213740458015267, 0.12213740458015267, 0.12213740458015267, 0.12213740458015267, 0.15267175572519084, 0.13740458015267176, 0.1297709923664122, 0.12213740458015267, 0.11450381679389313, 0.08396946564885496, 0.07633587786259542, 0.07633587786259542, 0.08396946564885496, 0.08396946564885496, 0.26717557251908397, 0.0916030534351145, 0.08396946564885496, 0.08396946564885496, 0.08396946564885496, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.0916030534351145, 0.2595419847328244, 0.2595419847328244, 0.2595419847328244, 0.22137404580152673, 0.05343511450381679, 0.007633587786259542, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.4580152671755725, 0.061068702290076333, 0.015267175572519083, 0.022900763358778626, 0.0, 0.0, 0.0, 0.0, 0.007633587786259542, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.06870229007633588, 0.10687022900763359, 0.0916030534351145, 0.0916030534351145, 0.15267175572519084], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/F5_F8_type_C.gap.json b/pfam_gap_rates/F5_F8_type_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4404dce21709fd44e511aff3339a16f93111fef3
--- /dev/null
+++ b/pfam_gap_rates/F5_F8_type_C.gap.json
@@ -0,0 +1 @@
+{"family": "F5_F8_type_C", "n_seqs": 5000, "length": 164, "gap_rates": [0.8966, 0.6072, 0.4898, 0.4188, 0.3748, 0.3506, 0.3346, 0.8962, 0.9344, 0.8438, 0.5312, 0.2848, 0.2502, 0.2264, 0.1906, 0.9104, 0.7252, 0.1504, 0.1314, 0.122, 0.1136, 0.1064, 0.103, 0.1002, 0.8952, 0.9196, 0.8766, 0.1454, 0.2356, 0.2114, 0.0848, 0.0604, 0.8486, 0.9114, 0.9362, 0.8844, 0.8002, 0.0534, 0.054, 0.0514, 0.8426, 0.0514, 0.07, 0.0562, 0.0548, 0.0558, 0.1328, 0.2594, 0.7648, 0.8992, 0.9352, 0.811, 0.691, 0.0354, 0.0306, 0.0268, 0.0238, 0.021, 0.021, 0.0198, 0.0196, 0.0194, 0.0192, 0.0186, 0.0176, 0.0168, 0.0166, 0.0164, 0.0158, 0.0158, 0.0152, 0.0152, 0.0156, 0.0186, 0.169, 0.2028, 0.2562, 0.479, 0.8178, 0.9342, 0.9492, 0.895, 0.666, 0.0398, 0.0212, 0.0168, 0.0202, 0.0184, 0.0154, 0.0152, 0.0156, 0.0154, 0.0164, 0.0162, 0.0282, 0.023, 0.024, 0.9042, 0.032, 0.0942, 0.0542, 0.059, 0.0482, 0.037, 0.0358, 0.0372, 0.0382, 0.6888, 0.8034, 0.9336, 0.8728, 0.7152, 0.6568, 0.4234, 0.4664, 0.3226, 0.8884, 0.9486, 0.5554, 0.1236, 0.0922, 0.0958, 0.1082, 0.1344, 0.8894, 0.3886, 0.293, 0.1882, 0.116, 0.1004, 0.0836, 0.0792, 0.0732, 0.0744, 0.0806, 0.8632, 0.3066, 0.0988, 0.0792, 0.0806, 0.0802, 0.0836, 0.0818, 0.0796, 0.0822, 0.0838, 0.0874, 0.0924, 0.0998, 0.1108, 0.9376, 0.3944, 0.3108, 0.2934, 0.3288, 0.6216, 0.601, 0.4008, 0.4246, 0.4566, 0.4964, 0.55, 0.6356, 0.7184], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FR47.gap.json b/pfam_gap_rates/FR47.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..69ac3a25bdeb07e7f75d8c4f7541018b9a250e18
--- /dev/null
+++ b/pfam_gap_rates/FR47.gap.json
@@ -0,0 +1 @@
+{"family": "FR47", "n_seqs": 684, "length": 90, "gap_rates": [0.8713450292397661, 0.7777777777777778, 0.7280701754385965, 0.7134502923976608, 0.7090643274853801, 0.695906432748538, 0.7236842105263158, 0.8347953216374269, 0.6549707602339181, 0.6111111111111112, 0.5730994152046783, 0.5380116959064327, 0.5146198830409356, 0.46637426900584794, 0.4619883040935672, 0.45760233918128657, 0.43859649122807015, 0.39473684210526316, 0.35233918128654973, 0.2997076023391813, 0.23976608187134502, 0.20614035087719298, 0.7792397660818714, 0.15058479532163743, 0.10818713450292397, 0.0847953216374269, 0.07602339181286549, 0.05701754385964912, 0.02046783625730994, 0.02046783625730994, 0.013157894736842105, 0.011695906432748537, 0.014619883040935672, 0.017543859649122806, 0.014619883040935672, 0.008771929824561403, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0029239766081871343, 0.0029239766081871343, 0.0043859649122807015, 0.0029239766081871343, 0.0014619883040935672, 0.0029239766081871343, 0.0029239766081871343, 0.0029239766081871343, 0.011695906432748537, 0.0043859649122807015, 0.005847953216374269, 0.007309941520467836, 0.013157894736842105, 0.01608187134502924, 0.014619883040935672, 0.8991228070175439, 0.017543859649122806, 0.017543859649122806, 0.014619883040935672, 0.019005847953216373, 0.9371345029239766, 0.024853801169590642, 0.03070175438596491, 0.027777777777777776, 0.02631578947368421, 0.029239766081871343, 0.03654970760233918, 0.03216374269005848, 0.03216374269005848, 0.04093567251461988, 0.05116959064327485, 0.04824561403508772, 0.043859649122807015, 0.04678362573099415, 0.039473684210526314, 0.038011695906432746, 0.038011695906432746, 0.038011695906432746, 0.04093567251461988, 0.04532163742690058, 0.04824561403508772, 0.05263157894736842, 0.07748538011695906, 0.15497076023391812, 0.27046783625730997, 0.5497076023391813, 0.6652046783625731, 0.7602339181286549, 0.8026315789473685, 0.8260233918128655, 0.9342105263157895], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FXa_inhibition.gap.json b/pfam_gap_rates/FXa_inhibition.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d26f9a797e0333e3462aec3519acec663354099
--- /dev/null
+++ b/pfam_gap_rates/FXa_inhibition.gap.json
@@ -0,0 +1 @@
+{"family": "FXa_inhibition", "n_seqs": 2480, "length": 41, "gap_rates": [0.0935483870967742, 0.09233870967741936, 0.08588709677419355, 0.054838709677419356, 0.041935483870967745, 0.02620967741935484, 0.0125, 0.0004032258064516129, 0.0004032258064516129, 0.0004032258064516129, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9129032258064517, 0.0, 0.0, 0.9213709677419355, 0.9483870967741935, 0.902016129032258, 0.0, 0.9383064516129033, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0016129032258064516, 0.004435483870967742, 0.013306451612903225, 0.020161290322580645, 0.024596774193548387, 0.03467741935483871, 0.028629032258064516, 0.03346774193548387, 0.03306451612903226, 0.03790322580645161], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Far-17a_AIG1.gap.json b/pfam_gap_rates/Far-17a_AIG1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..520f713241b56dda74a6a9126f83d217217e6c14
--- /dev/null
+++ b/pfam_gap_rates/Far-17a_AIG1.gap.json
@@ -0,0 +1 @@
+{"family": "Far-17a_AIG1", "n_seqs": 358, "length": 241, "gap_rates": [0.7374301675977654, 0.6396648044692738, 0.6005586592178771, 0.5726256983240223, 0.5586592178770949, 0.5446927374301676, 0.5279329608938548, 0.5, 0.48044692737430167, 0.4776536312849162, 0.4692737430167598, 0.46368715083798884, 0.44972067039106145, 0.44972067039106145, 0.4441340782122905, 0.4329608938547486, 0.41899441340782123, 0.41899441340782123, 0.41620111731843573, 0.4134078212290503, 0.40782122905027934, 0.4553072625698324, 0.44692737430167595, 0.4301675977653631, 0.42178770949720673, 0.41899441340782123, 0.4776536312849162, 0.4553072625698324, 0.5418994413407822, 0.7346368715083799, 0.8687150837988827, 0.9078212290502793, 0.7905027932960894, 0.6927374301675978, 0.29329608938547486, 0.2877094972067039, 0.27932960893854747, 0.2430167597765363, 0.23184357541899442, 0.22346368715083798, 0.2122905027932961, 0.2011173184357542, 0.19273743016759776, 0.18994413407821228, 0.1871508379888268, 0.18435754189944134, 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\ No newline at end of file
diff --git a/pfam_gap_rates/FeoC.gap.json b/pfam_gap_rates/FeoC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3fde51d5bd64953002eb94837c9077e09d10ce75
--- /dev/null
+++ b/pfam_gap_rates/FeoC.gap.json
@@ -0,0 +1 @@
+{"family": "FeoC", "n_seqs": 152, "length": 75, "gap_rates": [0.4144736842105263, 0.23684210526315788, 0.18421052631578946, 0.1513157894736842, 0.11842105263157894, 0.09868421052631579, 0.08552631578947369, 0.08552631578947369, 0.125, 0.09210526315789473, 0.07236842105263158, 0.05921052631578947, 0.05263157894736842, 0.046052631578947366, 0.039473684210526314, 0.019736842105263157, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.0, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.0, 0.0, 0.0, 0.0, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.039473684210526314, 0.05263157894736842, 0.09210526315789473, 0.10526315789473684, 0.09868421052631579, 0.23026315789473684, 0.756578947368421, 0.9407894736842105, 0.9013157894736842, 0.6447368421052632, 0.25, 0.14473684210526316, 0.14473684210526316, 0.13815789473684212, 0.19078947368421054, 0.2894736842105263, 0.1513157894736842, 0.16447368421052633, 0.23026315789473684, 0.3157894736842105, 0.375, 0.4144736842105263, 0.9473684210526315, 0.9078947368421053, 0.4868421052631579, 0.506578947368421, 0.5328947368421053, 0.6513157894736842], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fibrinogen_C.gap.json b/pfam_gap_rates/Fibrinogen_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a29eea775478d72bdd6837db97596e68440000ff
--- /dev/null
+++ b/pfam_gap_rates/Fibrinogen_C.gap.json
@@ -0,0 +1 @@
+{"family": "Fibrinogen_C", "n_seqs": 2291, "length": 236, "gap_rates": [0.7660410301178525, 0.5870798777826277, 0.48756001745962463, 0.4670449585333915, 0.46573548668703624, 0.4635530336097774, 0.46268005237887383, 0.4609340899170668, 0.4618070711479703, 0.4500218245307726, 0.4430379746835443, 0.3902226102138804, 0.3618507202095155, 0.3404626800523789, 0.32693147097337405, 0.3173286774334352, 0.3116542994325622, 0.3077258838934963, 0.30510694020078566, 0.30336097773897863, 0.3037974683544304, 0.3046704495853339, 0.30336097773897863, 0.30336097773897863, 0.3029244871235268, 0.5456132693147098, 0.8747271933653427, 0.3400261894369271, 0.2885202968136185, 0.28240942819729375, 0.2666957660410301, 0.24967263203841117, 0.24879965080750763, 0.24443474465298995, 0.2453077258838935, 0.2343954604975993, 0.2553470100392842, 0.23919685726756876, 0.233085988651244, 0.21038847664775207, 0.1911828895678743, 0.17765168048886948, 0.15800960279353993, 0.14971628109995636, 0.12832824094281972, 0.13094718463553034, 0.1340026189436927, 0.14054997817546921, 0.1584460934089917, 0.16368398079441293, 0.16586643387167177, 0.17023134002618945, 0.16892186817983412, 0.1680488869489306, 0.16673941510257528, 0.1680488869489306, 0.16630292448712353, 0.16586643387167177, 0.16586643387167177, 0.16586643387167177, 0.16761239633347882, 0.16586643387167177, 0.16499345264076823, 0.16368398079441293, 0.1641204714098647, 0.16368398079441293, 0.16455696202531644, 0.16630292448712353, 0.16848537756438237, 0.16586643387167177, 0.16673941510257528, 0.8236577913574858, 0.9498035792230467, 0.9319074639895242, 0.24749017896115233, 0.1680488869489306, 0.16892186817983412, 0.16979484941073766, 0.16717590571802707, 0.16193801833260585, 0.1623745089480576, 0.16368398079441293, 0.1641204714098647, 0.16324749017896115, 0.16499345264076823, 0.16673941510257528, 0.16761239633347882, 0.16586643387167177, 0.16673941510257528, 0.17503273679615888, 0.17023134002618945, 0.9415102575294632, 0.8961152335224792, 0.1693583587952859, 0.16586643387167177, 0.16324749017896115, 0.1615015277171541, 0.1615015277171541, 0.1615015277171541, 0.1610650371017023, 0.16062854648625055, 0.16193801833260585, 0.17154081187254475, 0.16630292448712353, 0.23483195111305108, 0.1724137931034483, 0.16979484941073766, 0.16979484941073766, 0.1693583587952859, 0.16761239633347882, 0.16761239633347882, 0.16630292448712353, 0.16499345264076823, 0.17852466171977302, 0.17590571802706242, 0.16499345264076823, 0.16542994325621999, 0.16586643387167177, 0.16717590571802707, 0.16717590571802707, 0.1724137931034483, 0.17721518987341772, 0.1706678306416412, 0.1693583587952859, 0.16761239633347882, 0.16761239633347882, 0.1680488869489306, 0.16979484941073766, 0.9367088607594937, 0.16979484941073766, 0.17110432125709296, 0.17503273679615888, 0.17939764295067656, 0.17852466171977302, 0.17677869925796597, 0.30554343081623747, 0.312090790048014, 0.28502837189000435, 0.3238760366652117, 0.36665211697948497, 0.3915320820602357, 0.40724574421649934, 0.9371453513749455, 0.9493670886075949, 0.9432562199912702, 0.9240506329113924, 0.7079877782627674, 0.6490615451767787, 0.6171977302487996, 0.5796595373199476, 0.6036665211697948, 0.5298996071584461, 0.4679179397642951, 0.22130074203404626, 0.20951549541684852, 0.19991270187690965, 0.1924923614142296, 0.18550851156700132, 0.184199039720646, 0.1828895678742907, 0.18245307725883894, 0.18332605848974248, 0.18463553033609778, 0.18725447402880838, 0.19336534264513314, 0.19947621126145787, 0.2073330423395897, 0.22872108249672632, 0.9480576167612397, 0.7333042339589699, 0.24312527280663465, 0.23657791357485813, 0.21999127018769096, 0.2138804015713662, 0.2020951549541685, 0.2003491924923614, 0.19991270187690965, 0.2016586643387167, 0.20515058926233087, 0.20515058926233087, 0.2034046268005238, 0.1990397206460061, 0.2003491924923614, 0.20296813618507203, 0.2034046268005238, 0.20646006110868617, 0.21475338280226974, 0.21911828895678742, 0.22435617634220864, 0.23090353557398516, 0.24050632911392406, 0.24312527280663465, 0.25229157573112176, 0.24618070711479703, 0.24574421649934527, 0.24967263203841117, 0.3509384548232213, 0.35006547359231777, 0.306416412047141, 0.31645569620253167, 0.32256656481885637, 0.32605848974247054, 0.3282409428197294, 0.33435181143605414, 0.3387167175905718, 0.35006547359231777, 0.3566128328240943, 0.8725447402880838, 0.9301615015277171, 0.8153644696639022, 0.5316455696202531, 0.3605412483631602, 0.34875600174596244, 0.34351811436054125, 0.343954604975993, 0.3457005674378001, 0.35006547359231777, 0.3574858140549978, 0.3587952859013531, 0.3618507202095155, 0.374072457442165, 0.9423832387603667, 0.38542121344391095, 0.3849847228284592, 0.3731994762112615, 0.37189000436490616, 0.37450894805761675, 0.37756438236577916, 0.381492797904845, 0.38192928852029684, 0.3841117415975557, 0.38454823221300743, 0.39764295067656047, 0.4233958969882147, 0.6320384111741597, 0.8799650807507639], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Flavodoxin_NdrI.gap.json b/pfam_gap_rates/Flavodoxin_NdrI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..03519989ccd83c671d726e62a250c91fc5e049ee
--- /dev/null
+++ b/pfam_gap_rates/Flavodoxin_NdrI.gap.json
@@ -0,0 +1 @@
+{"family": "Flavodoxin_NdrI", "n_seqs": 346, "length": 143, "gap_rates": [0.12427745664739884, 0.031791907514450865, 0.031791907514450865, 0.031791907514450865, 0.031791907514450865, 0.028901734104046242, 0.02601156069364162, 0.02601156069364162, 0.02601156069364162, 0.02601156069364162, 0.02601156069364162, 0.023121387283236993, 0.023121387283236993, 0.02023121387283237, 0.02023121387283237, 0.02023121387283237, 0.02023121387283237, 0.02023121387283237, 0.02023121387283237, 0.8786127167630058, 0.838150289017341, 0.04335260115606936, 0.06069364161849711, 0.04335260115606936, 0.028901734104046242, 0.08092485549132948, 0.08959537572254335, 0.15606936416184972, 0.14739884393063585, 0.8063583815028902, 0.8121387283236994, 0.8236994219653179, 0.846820809248555, 0.861271676300578, 0.8901734104046243, 0.9190751445086706, 0.8641618497109826, 0.8554913294797688, 0.8236994219653179, 0.815028901734104, 0.8092485549132948, 0.791907514450867, 0.14739884393063585, 0.2976878612716763, 0.23121387283236994, 0.11849710982658959, 0.05202312138728324, 0.028901734104046242, 0.014450867052023121, 0.008670520231213872, 0.008670520231213872, 0.011560693641618497, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.08092485549132948, 0.3063583815028902, 0.7283236994219653, 0.6936416184971098, 0.3063583815028902, 0.3554913294797688, 0.30346820809248554, 0.6907514450867052, 0.7138728323699421, 0.9421965317919075, 0.9017341040462428, 0.6936416184971098, 0.6878612716763006, 0.017341040462427744, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.002890173410404624, 0.002890173410404624, 0.21676300578034682, 0.21098265895953758, 0.014450867052023121, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.014450867052023121, 0.023121387283236993, 0.11560693641618497, 0.9364161849710982], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Flg_new.gap.json b/pfam_gap_rates/Flg_new.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..420f836deb3641e4a06a5a007b04bfc835f98758
--- /dev/null
+++ b/pfam_gap_rates/Flg_new.gap.json
@@ -0,0 +1 @@
+{"family": "Flg_new", "n_seqs": 3412, "length": 92, "gap_rates": [0.4563305978898007, 0.30392731535756157, 0.21365767878077374, 0.19665885111371628, 0.182883939038687, 0.1764361078546307, 0.1682297772567409, 0.9308323563892146, 0.15240328253223914, 0.13774912075029308, 0.9226260257913247, 0.9425556858147714, 0.8871629542790153, 0.12807737397420868, 0.12250879249706917, 0.7283118405627198, 0.9111957796014069, 0.8458382180539273, 0.5847010550996483, 0.1134232121922626, 0.8628370457209847, 0.9232121922626025, 0.7655334114888629, 0.10961313012895663, 0.10726846424384526, 0.8827667057444314, 0.7669988276670574, 0.0805978898007034, 0.8411488862837045, 0.9194021101992966, 0.9460726846424384, 0.8848182883939039, 0.7974794841735052, 0.06506447831184056, 0.06184056271981243, 0.053341148886283704, 0.9355216881594373, 0.04425556858147714, 0.043083235638921455, 0.0354630715123095, 0.03048065650644783, 0.031652989449003514, 0.03048065650644783, 0.02637749120750293, 0.8599062133645955, 0.9232121922626025, 0.7253810082063306, 0.02813599062133646, 0.0873388042203986, 0.017584994138335287, 0.03018757327080891, 0.013188745603751465, 0.008499413833528723, 0.009085580304806565, 0.008499413833528723, 0.004689331770222743, 0.006447831184056272, 0.007327080890973036, 0.0076201641266119575, 0.007327080890973036, 0.008206330597889801, 0.01846424384525205, 0.06623681125439625, 0.16412661195779601, 0.21453692848769051, 0.2022274325908558, 0.8786635404454866, 0.14038686987104337, 0.85052754982415, 0.1242672919109027, 0.12514654161781946, 0.14243845252051582, 0.16910902696365768, 0.18493552168815944, 0.17878077373974208, 0.19138335287221572, 0.22977725674091443, 0.9322977725674091, 0.9451934349355217, 0.9009378663540446, 0.2444314185228605, 0.2828253223915592, 0.4686400937866354, 0.36957796014067995, 0.21776084407971863, 0.22039859320046892, 0.23124267291910902, 0.2376905041031653, 0.25058616647127785, 0.26348182883939036, 0.29454865181711604, 0.5413247362250879], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Flot.gap.json b/pfam_gap_rates/Flot.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..33c00f8f0591f2ff5783ce972ae1c8de2ef24ce2
--- /dev/null
+++ b/pfam_gap_rates/Flot.gap.json
@@ -0,0 +1 @@
+{"family": "Flot", "n_seqs": 492, "length": 136, "gap_rates": [0.5609756097560976, 0.17479674796747968, 0.1483739837398374, 0.10975609756097561, 0.0975609756097561, 0.09349593495934959, 0.07723577235772358, 0.07317073170731707, 0.06097560975609756, 0.04065040650406504, 0.006097560975609756, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.36585365853658536, 0.36585365853658536, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0020325203252032522, 0.0020325203252032522, 0.0020325203252032522, 0.0020325203252032522, 0.0020325203252032522, 0.0020325203252032522, 0.0020325203252032522, 0.0020325203252032522, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9471544715447154, 0.9491869918699187, 0.9491869918699187, 0.9471544715447154, 0.9451219512195121, 0.0, 0.0040650406504065045, 0.0020325203252032522, 0.0, 0.0020325203252032522, 0.0040650406504065045, 0.01016260162601626, 0.008130081300813009, 0.008130081300813009, 0.006097560975609756, 0.008130081300813009, 0.0040650406504065045, 0.008130081300813009, 0.75, 0.7378048780487805, 0.7235772357723578, 0.741869918699187, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0020325203252032522, 0.9390243902439024, 0.9369918699186992, 0.0, 0.0020325203252032522, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.054878048780487805, 0.06707317073170732, 0.028455284552845527, 0.042682926829268296, 0.16869918699186992, 0.1483739837398374, 0.1402439024390244, 0.7479674796747967, 0.8719512195121951, 0.9369918699186992, 0.8983739837398373, 0.8292682926829268, 0.7032520325203252, 0.5955284552845529, 0.6219512195121951, 0.5548780487804879, 0.540650406504065, 0.5345528455284553, 0.4959349593495935, 0.4715447154471545, 0.45934959349593496, 0.4491869918699187, 0.4817073170731707, 0.46747967479674796, 0.46747967479674796, 0.4878048780487805, 0.48577235772357724, 0.491869918699187, 0.5060975609756098, 0.5365853658536586, 0.5833333333333334, 0.6138211382113821, 0.6260162601626016, 0.6544715447154471, 0.7012195121951219, 0.7113821138211383, 0.7703252032520326, 0.7784552845528455, 0.7865853658536586, 0.7479674796747967, 0.7540650406504065, 0.7560975609756098, 0.7642276422764228, 0.766260162601626, 0.7682926829268293, 0.7723577235772358, 0.774390243902439, 0.7845528455284553, 0.7947154471544715, 0.8008130081300813, 0.8333333333333334, 0.8353658536585366, 0.8536585365853658], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FragX_IP.gap.json b/pfam_gap_rates/FragX_IP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..18241012c43e0d3cd7fba67ed62dba508999f852
--- /dev/null
+++ b/pfam_gap_rates/FragX_IP.gap.json
@@ -0,0 +1 @@
+{"family": "FragX_IP", "n_seqs": 288, "length": 915, "gap_rates": [0.6840277777777778, 0.5173611111111112, 0.4548611111111111, 0.4270833333333333, 0.4201388888888889, 0.4097222222222222, 0.40625, 0.4027777777777778, 0.3993055555555556, 0.3958333333333333, 0.3958333333333333, 0.3958333333333333, 0.3958333333333333, 0.3958333333333333, 0.3958333333333333, 0.3958333333333333, 0.3958333333333333, 0.3958333333333333, 0.3958333333333333, 0.3923611111111111, 0.3923611111111111, 0.3923611111111111, 0.3923611111111111, 0.3923611111111111, 0.3923611111111111, 0.3923611111111111, 0.3923611111111111, 0.3923611111111111, 0.3923611111111111, 0.3923611111111111, 0.3923611111111111, 0.3958333333333333, 0.40625, 0.40625, 0.8784722222222222, 0.9201388888888888, 0.8680555555555556, 0.4513888888888889, 0.4444444444444444, 0.4131944444444444, 0.40625, 0.4097222222222222, 0.4027777777777778, 0.3993055555555556, 0.3993055555555556, 0.3958333333333333, 0.3993055555555556, 0.3993055555555556, 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\ No newline at end of file
diff --git a/pfam_gap_rates/FtsX.gap.json b/pfam_gap_rates/FtsX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..89db43dba6dc9b52a9ac8003d49f818a9a9caa83
--- /dev/null
+++ b/pfam_gap_rates/FtsX.gap.json
@@ -0,0 +1 @@
+{"family": "FtsX", "n_seqs": 5000, "length": 133, "gap_rates": [0.6032, 0.1954, 0.0928, 0.0426, 0.022, 0.0148, 0.0112, 0.0072, 0.0064, 0.0056, 0.0052, 0.0056, 0.006, 0.006, 0.0042, 0.0036, 0.0038, 0.0038, 0.0034, 0.0036, 0.0036, 0.0032, 0.0022, 0.0018, 0.0018, 0.002, 0.0018, 0.0016, 0.0016, 0.0016, 0.0016, 0.0014, 0.0014, 0.0014, 0.0014, 0.0014, 0.001, 0.0012, 0.001, 0.0008, 0.0002, 0.0002, 0.0002, 0.0002, 0.0002, 0.0004, 0.0004, 0.0008, 0.0008, 0.0012, 0.0012, 0.001, 0.0012, 0.0024, 0.0022, 0.0022, 0.0022, 0.0018, 0.002, 0.002, 0.0022, 0.0038, 0.0034, 0.0032, 0.0028, 0.0026, 0.0032, 0.0032, 0.0058, 0.0234, 0.0196, 0.0264, 0.0198, 0.0356, 0.049, 0.225, 0.3316, 0.4614, 0.6896, 0.791, 0.8564, 0.9042, 0.9294, 0.9414, 0.9468, 0.936, 0.918, 0.892, 0.8292, 0.7538, 0.6032, 0.3574, 0.3302, 0.2952, 0.0488, 0.026, 0.0158, 0.015, 0.014, 0.014, 0.0122, 0.0126, 0.0132, 0.0128, 0.0124, 0.0136, 0.0168, 0.0154, 0.014, 0.0138, 0.019, 0.0184, 0.0146, 0.0158, 0.0164, 0.0178, 0.0206, 0.022, 0.025, 0.0286, 0.0346, 0.0422, 0.0524, 0.0626, 0.0752, 0.0924, 0.1176, 0.1506, 0.1996, 0.2578, 0.3558, 0.4798, 0.6284], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fucokinase.gap.json b/pfam_gap_rates/Fucokinase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5c5d15359a81c18de2b15a8921c8e6309476e262
--- /dev/null
+++ b/pfam_gap_rates/Fucokinase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GAS2.gap.json b/pfam_gap_rates/GAS2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7438ce19d33198bd657ff4d60d04565ad350ad2d
--- /dev/null
+++ b/pfam_gap_rates/GAS2.gap.json
@@ -0,0 +1 @@
+{"family": "GAS2", "n_seqs": 474, "length": 79, "gap_rates": [0.5548523206751055, 0.5084388185654009, 0.49156118143459915, 0.4704641350210971, 0.45569620253164556, 0.45147679324894513, 0.4430379746835443, 0.43248945147679324, 0.4282700421940928, 0.41561181434599154, 0.41139240506329117, 0.9135021097046413, 0.9135021097046413, 0.3987341772151899, 0.3987341772151899, 0.3987341772151899, 0.4050632911392405, 0.37341772151898733, 0.31223628691983124, 0.3037974683544304, 0.2890295358649789, 0.2848101265822785, 0.27848101265822783, 0.2489451476793249, 0.22573839662447256, 0.2109704641350211, 0.2088607594936709, 0.20464135021097046, 0.20253164556962025, 0.18565400843881857, 0.18143459915611815, 0.9367088607594937, 0.9451476793248945, 0.9430379746835443, 0.9367088607594937, 0.14345991561181434, 0.14135021097046413, 0.14135021097046413, 0.4282700421940928, 0.8881856540084389, 0.4219409282700422, 0.12025316455696203, 0.10126582278481013, 0.08649789029535865, 0.08438818565400844, 0.08227848101265822, 0.07805907172995781, 0.07172995780590717, 0.0759493670886076, 0.04008438818565401, 0.8881856540084389, 0.8987341772151899, 0.6561181434599156, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.027426160337552744, 0.02531645569620253, 0.02531645569620253, 0.029535864978902954, 0.03164556962025317, 0.03164556962025317, 0.029535864978902954, 0.029535864978902954, 0.029535864978902954, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03375527426160337, 0.046413502109704644, 0.07805907172995781, 0.2552742616033755, 0.4008438818565401, 0.4388185654008439, 0.4831223628691983, 0.4957805907172996, 0.6054852320675106], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GAT.gap.json b/pfam_gap_rates/GAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21c426f1f2493eff1d9a5c84f91f58cd9cb688ce
--- /dev/null
+++ b/pfam_gap_rates/GAT.gap.json
@@ -0,0 +1 @@
+{"family": "GAT", "n_seqs": 786, "length": 83, "gap_rates": [0.5089058524173028, 0.18193384223918574, 0.10687022900763359, 0.04580152671755725, 0.03816793893129771, 0.03435114503816794, 0.027989821882951654, 0.027989821882951654, 0.027989821882951654, 0.022900763358778626, 0.020356234096692113, 0.019083969465648856, 0.017811704834605598, 0.015267175572519083, 0.013994910941475827, 0.030534351145038167, 0.026717557251908396, 0.9274809160305344, 0.43765903307888043, 0.2099236641221374, 0.026717557251908396, 0.013994910941475827, 0.011450381679389313, 0.011450381679389313, 0.005089058524173028, 0.005089058524173028, 0.001272264631043257, 0.0, 0.002544529262086514, 0.001272264631043257, 0.001272264631043257, 0.001272264631043257, 0.001272264631043257, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008905852417302799, 0.9020356234096693, 0.9147582697201018, 0.8778625954198473, 0.010178117048346057, 0.015267175572519083, 0.01272264631043257, 0.01272264631043257, 0.5381679389312977, 0.9491094147582697, 0.12468193384223919, 0.12595419847328243, 0.09923664122137404, 0.008905852417302799, 0.008905852417302799, 0.008905852417302799, 0.008905852417302799, 0.008905852417302799, 0.008905852417302799, 0.008905852417302799, 0.010178117048346057, 0.011450381679389313, 0.011450381679389313, 0.011450381679389313, 0.011450381679389313, 0.011450381679389313, 0.011450381679389313, 0.01272264631043257, 0.020356234096692113, 0.026717557251908396, 0.035623409669211195, 0.06361323155216285, 0.10814249363867684, 0.26717557251908397, 0.6704834605597965], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GATA.gap.json b/pfam_gap_rates/GATA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ab4f6eae4119e07243f069854f5dc54451e00b18
--- /dev/null
+++ b/pfam_gap_rates/GATA.gap.json
@@ -0,0 +1 @@
+{"family": "GATA", "n_seqs": 2970, "length": 36, "gap_rates": [0.02255892255892256, 0.02053872053872054, 0.01616161616161616, 0.013804713804713804, 0.013468013468013467, 0.013131313131313131, 0.009764309764309764, 0.007407407407407408, 0.004377104377104377, 0.003703703703703704, 0.0013468013468013469, 0.0006734006734006734, 0.0006734006734006734, 0.0003367003367003367, 0.0003367003367003367, 0.9383838383838384, 0.011447811447811448, 0.0047138047138047135, 0.0003367003367003367, 0.0003367003367003367, 0.0023569023569023568, 0.48922558922558923, 0.003703703703703704, 0.0023569023569023568, 0.0023569023569023568, 0.0023569023569023568, 0.004377104377104377, 0.005723905723905724, 0.008417508417508417, 0.013468013468013467, 0.019528619528619527, 0.029292929292929294, 0.039057239057239054, 0.08518518518518518, 0.18181818181818182, 0.3797979797979798], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GBS_Bsp-like.gap.json b/pfam_gap_rates/GBS_Bsp-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b3c55a0d20cc72bd13d2c54a12f2a5f2b87fe06d
--- /dev/null
+++ b/pfam_gap_rates/GBS_Bsp-like.gap.json
@@ -0,0 +1 @@
+{"family": "GBS_Bsp-like", "n_seqs": 143, "length": 95, "gap_rates": [0.9440559440559441, 0.6853146853146853, 0.5594405594405595, 0.5174825174825175, 0.46853146853146854, 0.40559440559440557, 0.34265734265734266, 0.23776223776223776, 0.2097902097902098, 0.17482517482517482, 0.15384615384615385, 0.1258741258741259, 0.13286713286713286, 0.11888111888111888, 0.11188811188811189, 0.1048951048951049, 0.1048951048951049, 0.11188811188811189, 0.0979020979020979, 0.3706293706293706, 0.916083916083916, 0.22377622377622378, 0.08391608391608392, 0.07692307692307693, 0.08391608391608392, 0.06993006993006994, 0.04895104895104895, 0.06293706293706294, 0.04895104895104895, 0.03496503496503497, 0.0, 0.0, 0.0, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.3006993006993007, 0.027972027972027972, 0.013986013986013986, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.9440559440559441, 0.9440559440559441, 0.07692307692307693, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.027972027972027972, 0.03496503496503497, 0.07692307692307693, 0.06293706293706294, 0.1258741258741259, 0.027972027972027972, 0.04195804195804196, 0.06993006993006994, 0.04195804195804196, 0.03496503496503497, 0.03496503496503497, 0.027972027972027972, 0.013986013986013986, 0.013986013986013986, 0.006993006993006993, 0.013986013986013986, 0.013986013986013986, 0.027972027972027972, 0.24475524475524477, 0.027972027972027972, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.04195804195804196, 0.17482517482517482, 0.9370629370629371, 0.055944055944055944, 0.06293706293706294, 0.08391608391608392, 0.1048951048951049, 0.16783216783216784, 0.22377622377622378, 0.25874125874125875, 0.32867132867132864, 0.4125874125874126, 0.5034965034965035, 0.6153846153846154], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GCS2.gap.json b/pfam_gap_rates/GCS2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..013e6f0781763ffe0c567ed2ae762901ba6e99a8
--- /dev/null
+++ b/pfam_gap_rates/GCS2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GIDA.gap.json b/pfam_gap_rates/GIDA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..92ac714b13d256cb2689b5432ffe50d42a348978
--- /dev/null
+++ b/pfam_gap_rates/GIDA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GPI-anchored.gap.json b/pfam_gap_rates/GPI-anchored.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21e7532935714b08c09576f4fa475b72990b40cd
--- /dev/null
+++ b/pfam_gap_rates/GPI-anchored.gap.json
@@ -0,0 +1 @@
+{"family": "GPI-anchored", "n_seqs": 694, "length": 114, "gap_rates": [0.5648414985590778, 0.2579250720461095, 0.1786743515850144, 0.17146974063400577, 0.15273775216138327, 0.13112391930835735, 0.09654178674351585, 0.059077809798270896, 0.0345821325648415, 0.03025936599423631, 0.024495677233429394, 0.023054755043227664, 0.03170028818443804, 0.012968299711815562, 0.012968299711815562, 0.011527377521613832, 0.010086455331412104, 0.010086455331412104, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.2377521613832853, 0.3069164265129683, 0.9077809798270894, 0.9481268011527377, 0.9322766570605188, 0.8847262247838616, 0.14553314121037464, 0.06484149855907781, 0.010086455331412104, 0.7853025936599424, 0.8328530259365994, 0.8429394812680115, 0.8126801152737753, 0.7175792507204611, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.007204610951008645, 0.007204610951008645, 0.007204610951008645, 0.005763688760806916, 0.005763688760806916, 0.005763688760806916, 0.004322766570605188, 0.004322766570605188, 0.005763688760806916, 0.8645533141210374, 0.2780979827089337, 0.17579250720461095, 0.9495677233429395, 0.13976945244956773, 0.08645533141210375, 0.01440922190201729, 0.001440922190201729, 0.9452449567723343, 0.002881844380403458, 0.001440922190201729, 0.004322766570605188, 0.9380403458213257, 0.005763688760806916, 0.0345821325648415, 0.01440922190201729, 0.01585014409221902, 0.01729106628242075, 0.020172910662824207, 0.08069164265129683, 0.29250720461095103, 0.9236311239193083, 0.9409221902017291, 0.8904899135446686, 0.024495677233429394, 0.005763688760806916, 0.004322766570605188, 0.005763688760806916, 0.005763688760806916, 0.005763688760806916, 0.005763688760806916, 0.09654178674351585, 0.03314121037463977, 0.05043227665706052, 0.025936599423631124, 0.01440922190201729, 0.056195965417867436, 0.037463976945244955, 0.018731988472622477, 0.9365994236311239, 0.8948126801152738, 0.021613832853025938, 0.9077809798270894, 0.018731988472622477, 0.018731988472622477, 0.018731988472622477, 0.020172910662824207, 0.021613832853025938, 0.027377521613832854, 0.7536023054755043, 0.03170028818443804, 0.043227665706051875, 0.04899135446685879, 0.06484149855907781, 0.18876080691642652, 0.7017291066282421, 0.38904899135446686, 0.32132564841498557, 0.2478386167146974, 0.1930835734870317, 0.14697406340057637, 0.11815561959654179, 0.12680115273775217, 0.14697406340057637, 0.17723342939481268, 0.2132564841498559, 0.29250720461095103], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GRAM.gap.json b/pfam_gap_rates/GRAM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..50c0cf3d189759152d0ae8ff1c70c9598fb30da8
--- /dev/null
+++ b/pfam_gap_rates/GRAM.gap.json
@@ -0,0 +1 @@
+{"family": "GRAM", "n_seqs": 1948, "length": 150, "gap_rates": [0.910164271047228, 0.5005133470225873, 0.3711498973305955, 0.3141683778234086, 0.28080082135523615, 0.23459958932238192, 0.21919917864476385, 0.21406570841889117, 0.7679671457905544, 0.9460985626283368, 0.9265913757700205, 0.175564681724846, 0.1591375770020534, 0.14835728952772073, 0.1360369609856263, 0.12885010266940453, 0.12268993839835729, 0.11858316221765913, 0.11396303901437371, 0.11139630390143737, 0.9337782340862423, 0.9455852156057495, 0.9404517453798767, 0.9034907597535934, 0.09548254620123203, 0.09188911704312115, 0.08983572895277207, 0.08983572895277207, 0.08880903490759753, 0.08470225872689939, 0.08316221765913757, 0.1437371663244353, 0.14219712525667352, 0.5184804928131417, 0.8172484599589322, 0.8927104722792608, 0.9240246406570842, 0.9312114989733059, 0.9430184804928131, 0.9481519507186859, 0.9450718685831622, 0.9353182751540041, 0.9281314168377823, 0.8983572895277208, 0.885523613963039, 0.7997946611909651, 0.04158110882956879, 0.028747433264887063, 0.023613963039014373, 0.01591375770020534, 0.012833675564681724, 0.012320328542094456, 0.01026694045174538, 0.01026694045174538, 0.01026694045174538, 0.010780287474332649, 0.010780287474332649, 0.011293634496919919, 0.010780287474332649, 0.010780287474332649, 0.011293634496919919, 0.011806981519507187, 0.012833675564681724, 0.012833675564681724, 0.013347022587268994, 0.01642710472279261, 0.08162217659137577, 0.813141683778234, 0.8208418891170431, 0.8305954825462012, 0.8362422997946611, 0.8660164271047228, 0.8968172484599589, 0.8367556468172485, 0.8326488706365504, 0.8254620123203286, 0.8182751540041068, 0.8080082135523614, 0.043121149897330596, 0.04722792607802875, 0.049281314168377825, 0.11344969199178645, 0.11447638603696099, 0.9250513347022588, 0.757700205338809, 0.059034907597535935, 0.053388090349075976, 0.05082135523613963, 0.9358316221765913, 0.9296714579055442, 0.0513347022587269, 0.052361396303901436, 0.052361396303901436, 0.052874743326488706, 0.053388090349075976, 0.9091375770020534, 0.9065708418891171, 0.054414784394250515, 0.05595482546201232, 0.05595482546201232, 0.05646817248459959, 0.058521560574948665, 0.4804928131416838, 0.2120123203285421, 0.12012320328542095, 0.11652977412731007, 0.11242299794661191, 0.11550308008213553, 0.10985626283367557, 0.11242299794661191, 0.11806981519507187, 0.12474332648870637, 0.1293634496919918, 0.1324435318275154, 0.1370636550308008, 0.14117043121149897, 0.1437371663244353, 0.1473305954825462, 0.1524640657084189, 0.15657084188911705, 0.162217659137577, 0.4019507186858316, 0.721252566735113, 0.8085215605749486, 0.18942505133470225, 0.1837782340862423, 0.1837782340862423, 0.18583162217659138, 0.19096509240246407, 0.19609856262833675, 0.19763860369609856, 0.2002053388090349, 0.2037987679671458, 0.2104722792607803, 0.21149897330595482, 0.21560574948665298, 0.21919917864476385, 0.2268993839835729, 0.23562628336755648, 0.24178644763860369, 0.24897330595482547, 0.2648870636550308, 0.2813141683778234, 0.3059548254620123, 0.3362422997946612, 0.3957905544147844, 0.5118069815195072, 0.6442505133470225, 0.839835728952772, 0.9491786447638604], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GalP_UDP_tr_C.gap.json b/pfam_gap_rates/GalP_UDP_tr_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5c1a826ba455bb265bf9e4d2e1e0985fbe62758b
--- /dev/null
+++ b/pfam_gap_rates/GalP_UDP_tr_C.gap.json
@@ -0,0 +1 @@
+{"family": "GalP_UDP_tr_C", "n_seqs": 969, "length": 228, "gap_rates": [0.7492260061919505, 0.4695562435500516, 0.3735810113519092, 0.32714138286893707, 0.2786377708978328, 0.24045407636738905, 0.2218782249742002, 0.21671826625386997, 0.20330237358101136, 0.17543859649122806, 0.15479876160990713, 0.5242518059855521, 0.653250773993808, 0.6573787409700722, 0.6573787409700722, 0.6573787409700722, 0.6573787409700722, 0.6553147574819401, 0.6470588235294118, 0.11248710010319918, 0.1001031991744066, 0.08771929824561403, 0.07120743034055728, 0.07017543859649122, 0.06707946336429309, 0.06811145510835913, 0.06604747162022703, 0.06398348813209494, 0.0608875128998968, 0.6470588235294118, 0.6604747162022704, 0.6873065015479877, 0.6924664602683178, 0.6666666666666666, 0.6542827657378741, 0.6460268317853457, 0.053663570691434466, 0.05263157894736842, 0.054695562435500514, 0.04953560371517028, 0.04643962848297214, 0.03508771929824561, 0.030959752321981424, 0.030959752321981424, 0.02889576883384933, 0.02889576883384933, 0.025799793601651185, 0.023735810113519093, 0.02476780185758514, 0.022703818369453045, 0.32610939112487103, 0.030959752321981424, 0.021671826625386997, 0.0196078431372549, 0.02063983488132095, 0.0196078431372549, 0.0196078431372549, 0.02063983488132095, 0.02063983488132095, 0.018575851393188854, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.02063983488132095, 0.018575851393188854, 0.018575851393188854, 0.018575851393188854, 0.018575851393188854, 0.9473684210526315, 0.018575851393188854, 0.018575851393188854, 0.0196078431372549, 0.023735810113519093, 0.02063983488132095, 0.02063983488132095, 0.0196078431372549, 0.0196078431372549, 0.02063983488132095, 0.021671826625386997, 0.021671826625386997, 0.0196078431372549, 0.02063983488132095, 0.653250773993808, 0.6563467492260062, 0.6573787409700722, 0.6615067079463365, 0.6718266253869969, 0.9205366357069144, 0.9246646026831785, 0.9298245614035088, 0.9205366357069144, 0.9112487100103199, 0.6687306501547987, 0.6615067079463365, 0.6563467492260062, 0.6563467492260062, 0.653250773993808, 0.0196078431372549, 0.0784313725490196, 0.0804953560371517, 0.0804953560371517, 0.0825593395252838, 0.07533539731682147, 0.023735810113519093, 0.6904024767801857, 0.6924664602683178, 0.6945304437564499, 0.7079463364293086, 0.9308565531475749, 0.9484004127966976, 0.9432404540763674, 0.9112487100103199, 0.6986584107327142, 0.6945304437564499, 0.6914344685242518, 0.6687306501547987, 0.023735810113519093, 0.021671826625386997, 0.021671826625386997, 0.021671826625386997, 0.021671826625386997, 0.023735810113519093, 0.02476780185758514, 0.029927760577915376, 0.02786377708978328, 0.02889576883384933, 0.02889576883384933, 0.029927760577915376, 0.038183694530443756, 0.04953560371517028, 0.5954592363261094, 0.6357069143446853, 0.6377708978328174, 0.6563467492260062, 0.6573787409700722, 0.6501547987616099, 0.6357069143446853, 0.6160990712074303, 0.5923632610939112, 0.05056759545923633, 0.03611971104231166, 0.043343653250773995, 0.029927760577915376, 0.02889576883384933, 0.02889576883384933, 0.03199174406604747, 0.03611971104231166, 0.038183694530443756, 0.3849329205366357, 0.38080495356037153, 0.3797729618163055, 0.38080495356037153, 0.3766769865841073, 0.37770897832817335, 0.37564499484004127, 0.3766769865841073, 0.38390092879256965, 0.3973168214654283, 0.7843137254901961, 0.9391124871001032, 0.8183694530443757, 0.7316821465428277, 0.4107327141382869, 0.4117647058823529, 0.4200206398348813, 0.7131062951496389, 0.06191950464396285, 0.06707946336429309, 0.07533539731682147, 0.08359133126934984, 0.08565531475748193, 0.09494324045407637, 0.11351909184726522, 0.14447884416924664, 0.14860681114551083, 0.17647058823529413, 0.15892672858617132, 0.16821465428276575, 0.17234262125902994, 0.17750257997936017, 0.18472652218782248, 0.2002063983488132, 0.18885448916408668, 0.19195046439628483, 0.19298245614035087, 0.19711042311661506, 0.6429308565531475, 0.19711042311661506, 0.19814241486068113, 0.2002063983488132, 0.20227038183694532, 0.20123839009287925, 0.20123839009287925, 0.20123839009287925, 0.20123839009287925, 0.20330237358101136, 0.20330237358101136, 0.20330237358101136, 0.20227038183694532, 0.2043343653250774, 0.2084623323013416, 0.21362229102167182, 0.21775025799793601, 0.22807017543859648, 0.23839009287925697, 0.239422084623323, 0.25386996904024767, 0.26006191950464397, 0.2672858617131063, 0.7708978328173375, 0.8668730650154799, 0.8844169246646026, 0.8761609907120743, 0.8658410732714138, 0.7657378740970072, 0.6584107327141383, 0.47058823529411764, 0.49638802889576883, 0.5242518059855521, 0.5541795665634675, 0.5510835913312694, 0.5572755417956656, 0.5624355005159959, 0.5748194014447885, 0.631578947368421, 0.7997936016511867], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gasdermin.gap.json b/pfam_gap_rates/Gasdermin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b9d387fe6f5cc9dba5e635ccfbd6f045ac842801
--- /dev/null
+++ b/pfam_gap_rates/Gasdermin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GatB_N.gap.json b/pfam_gap_rates/GatB_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b71ed0f91bf9fa0753fb79d19eddc92a2d5418b0
--- /dev/null
+++ b/pfam_gap_rates/GatB_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Gla.gap.json b/pfam_gap_rates/Gla.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1404c831c3d37d6235b9ab9f9caaf352cf9c2679
--- /dev/null
+++ b/pfam_gap_rates/Gla.gap.json
@@ -0,0 +1 @@
+{"family": "Gla", "n_seqs": 223, "length": 41, "gap_rates": [0.06278026905829596, 0.04035874439461883, 0.03587443946188341, 0.02242152466367713, 0.017937219730941704, 0.017937219730941704, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.02242152466367713, 0.03139013452914798, 0.03587443946188341, 0.10762331838565023, 0.12556053811659193, 0.13004484304932734, 0.15246636771300448, 0.15695067264573992, 0.17040358744394618, 0.19282511210762332, 0.5022421524663677], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_18.gap.json b/pfam_gap_rates/Glyco_hydro_18.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..874e8e9e299f01901ee10cb73f32846b3d4e7ed9
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_18.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_hydro_18", "n_seqs": 4953, "length": 478, "gap_rates": [0.8398950131233596, 0.5705632949727438, 0.4387240056531395, 0.39571976579850593, 0.3779527559055118, 0.37189582071471833, 0.3704825358368665, 0.37270341207349084, 0.3672521704017767, 0.36826165960024226, 0.3710882293559459, 0.3706844336765597, 0.3985463355542096, 0.44861699979810216, 0.6200282656975571, 0.4405410862103776, 0.8176862507571169, 0.9446799919240864, 0.6989703210175651, 0.41590954976781747, 0.5895416919038966, 0.6880678376741369, 0.9170199878861296, 0.6517262265293762, 0.5538057742782152, 0.3448415101958409, 0.327478295982233, 0.849384211588936, 0.926509186351706, 0.9012719563900666, 0.8289925297799313, 0.3022410660205936, 0.2961841308298001, 0.2921461740359378, 0.2893196042802342, 0.28770442156268927, 0.27922471229557844, 0.2782152230971129, 0.27599434686048857, 0.2761962447001817, 0.27458106198263676, 0.27276398142539876, 0.2725620835857056, 0.290732889158086, 0.28083989501312334, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_42C.gap.json b/pfam_gap_rates/Glyco_hydro_42C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5714cadfd9a7a0554c6da52f4290097a609de399
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_42C.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_hydro_42C", "n_seqs": 359, "length": 63, "gap_rates": [0.34540389972144847, 0.1671309192200557, 0.1309192200557103, 0.116991643454039, 0.10584958217270195, 0.08635097493036212, 0.15598885793871867, 0.9387186629526463, 0.14763231197771587, 0.1392757660167131, 0.12813370473537605, 0.022284122562674095, 0.019498607242339833, 0.016713091922005572, 0.013927576601671309, 0.011142061281337047, 0.008356545961002786, 0.002785515320334262, 0.002785515320334262, 0.0, 0.0, 0.0, 0.0, 0.002785515320334262, 0.0, 0.0, 0.0, 0.0, 0.12256267409470752, 0.12534818941504178, 0.9331476323119777, 0.7019498607242339, 0.10584958217270195, 0.07242339832869081, 0.04735376044568245, 0.04178272980501393, 0.04178272980501393, 0.04735376044568245, 0.04456824512534819, 0.04456824512534819, 0.03899721448467967, 0.04456824512534819, 0.1977715877437326, 0.17548746518105848, 0.15041782729805014, 0.15041782729805014, 0.1615598885793872, 0.12813370473537605, 0.8690807799442897, 0.7827298050139275, 0.033426183844011144, 0.033426183844011144, 0.033426183844011144, 0.036211699164345405, 0.03899721448467967, 0.03899721448467967, 0.04735376044568245, 0.0584958217270195, 0.06128133704735376, 0.0807799442896936, 0.09749303621169916, 0.28969359331476324, 0.713091922005571], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_63.gap.json b/pfam_gap_rates/Glyco_hydro_63.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d5e9b3a710b0085466c4a8a841ba80bdc6e218b
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_63.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_trans_4_3.gap.json b/pfam_gap_rates/Glyco_trans_4_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..da03b203f4ea357461e6cfeb6f20f81bcf8a9601
--- /dev/null
+++ b/pfam_gap_rates/Glyco_trans_4_3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_7C.gap.json b/pfam_gap_rates/Glyco_transf_7C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2eefc3d60a3a8f7c636a3940a8739ad63416cc4
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_7C.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_transf_7C", "n_seqs": 844, "length": 79, "gap_rates": [0.6860189573459715, 0.5450236966824644, 0.5154028436018957, 0.4727488151658768, 0.4656398104265403, 0.4537914691943128, 0.4466824644549763, 0.42417061611374407, 0.4158767772511848, 0.3981042654028436, 0.38744075829383884, 0.3696682464454976, 0.3412322274881517, 0.31516587677725116, 0.2772511848341232, 0.20734597156398105, 0.15876777251184834, 0.13151658767772512, 0.10308056872037914, 0.07345971563981042, 0.05687203791469194, 0.0509478672985782, 0.037914691943127965, 0.018957345971563982, 0.014218009478672985, 0.008293838862559242, 0.008293838862559242, 0.0071090047393364926, 0.005924170616113744, 0.005924170616113744, 0.005924170616113744, 0.005924170616113744, 0.0071090047393364926, 0.0035545023696682463, 0.0035545023696682463, 0.004739336492890996, 0.001184834123222749, 0.001184834123222749, 0.001184834123222749, 0.002369668246445498, 0.008293838862559242, 0.0071090047393364926, 0.004739336492890996, 0.008293838862559242, 0.014218009478672985, 0.004739336492890996, 0.005924170616113744, 0.005924170616113744, 0.0071090047393364926, 0.005924170616113744, 0.0071090047393364926, 0.008293838862559242, 0.017772511848341232, 0.02132701421800948, 0.02843601895734597, 0.030805687203791468, 0.034360189573459717, 0.041469194312796206, 0.0485781990521327, 0.0533175355450237, 0.06872037914691943, 0.08293838862559241, 0.09004739336492891, 0.10545023696682465, 0.9300947867298578, 0.13270142180094788, 0.1457345971563981, 0.15876777251184834, 0.1670616113744076, 0.18009478672985782, 0.2014218009478673, 0.2890995260663507, 0.31635071090047395, 0.28791469194312796, 0.3080568720379147, 0.32109004739336494, 0.49644549763033174, 0.38270142180094785, 0.8696682464454977], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glycos_transf_3.gap.json b/pfam_gap_rates/Glycos_transf_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8be224f02ba17b1719a074ed9878bbc7ba951509
--- /dev/null
+++ b/pfam_gap_rates/Glycos_transf_3.gap.json
@@ -0,0 +1 @@
+{"family": "Glycos_transf_3", "n_seqs": 3078, "length": 263, "gap_rates": [0.8531513970110461, 0.38791423001949316, 0.10883690708252111, 0.08706952566601689, 0.0847953216374269, 0.08447043534762833, 0.08317089018843404, 0.08284600389863547, 0.08284600389863547, 0.08187134502923976, 0.08154645873944119, 0.08284600389863547, 0.07862248213125406, 0.07537361923326835, 0.06985055230669265, 0.06530214424951267, 0.4317738791423002, 0.42884990253411304, 0.39766081871345027, 0.057504873294346975, 0.05588044184535412, 0.04743339831059129, 0.036712150747238464, 0.03573749187784275, 0.0341130604288499, 0.03281351526965562, 0.03281351526965562, 0.03346328784925276, 0.03443794671864847, 0.03346328784925276, 0.05458089668615984, 0.03313840155945419, 0.03281351526965562, 0.03248862897985705, 0.03248862897985705, 0.03281351526965562, 0.03248862897985705, 0.03313840155945419, 0.03346328784925276, 0.03346328784925276, 0.03281351526965562, 0.03476283300844704, 0.03508771929824561, 0.03443794671864847, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Gram_pos_anchor.gap.json b/pfam_gap_rates/Gram_pos_anchor.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..09b4899979e150fd90385d09d834a56f46a94cd7
--- /dev/null
+++ b/pfam_gap_rates/Gram_pos_anchor.gap.json
@@ -0,0 +1 @@
+{"family": "Gram_pos_anchor", "n_seqs": 512, "length": 40, "gap_rates": [0.60546875, 0.39453125, 0.296875, 0.2265625, 0.146484375, 0.076171875, 0.041015625, 0.009765625, 0.00390625, 0.0, 0.0, 0.0, 0.89453125, 0.0, 0.0, 0.0, 0.0, 0.021484375, 0.71484375, 0.009765625, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.912109375, 0.044921875, 0.005859375, 0.001953125, 0.001953125, 0.0078125, 0.017578125, 0.033203125, 0.048828125, 0.1015625, 0.154296875, 0.220703125, 0.34375, 0.515625], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/H2O2_YaaD.gap.json b/pfam_gap_rates/H2O2_YaaD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4f0cdac1d44a43180c9df04ed6333999d2531a76
--- /dev/null
+++ b/pfam_gap_rates/H2O2_YaaD.gap.json
@@ -0,0 +1 @@
+{"family": "H2O2_YaaD", "n_seqs": 864, "length": 268, "gap_rates": [0.13425925925925927, 0.09027777777777778, 0.061342592592592594, 0.061342592592592594, 0.059027777777777776, 0.059027777777777776, 0.059027777777777776, 0.059027777777777776, 0.059027777777777776, 0.059027777777777776, 0.059027777777777776, 0.8784722222222222, 0.9212962962962963, 0.9074074074074074, 0.8726851851851852, 0.059027777777777776, 0.10185185185185185, 0.10416666666666667, 0.09837962962962964, 0.09027777777777778, 0.0798611111111111, 0.0787037037037037, 0.16319444444444445, 0.8402777777777778, 0.9155092592592593, 0.7858796296296297, 0.31828703703703703, 0.33796296296296297, 0.11574074074074074, 0.8958333333333334, 0.9444444444444444, 0.7314814814814815, 0.06481481481481481, 0.052083333333333336, 0.047453703703703706, 0.04861111111111111, 0.046296296296296294, 0.04398148148148148, 0.04398148148148148, 0.04282407407407408, 0.04282407407407408, 0.04282407407407408, 0.04282407407407408, 0.04282407407407408, 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\ No newline at end of file
diff --git a/pfam_gap_rates/HALZ.gap.json b/pfam_gap_rates/HALZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..47815e77399626f2aa27313134d92e55f430316c
--- /dev/null
+++ b/pfam_gap_rates/HALZ.gap.json
@@ -0,0 +1 @@
+{"family": "HALZ", "n_seqs": 587, "length": 43, "gap_rates": [0.02555366269165247, 0.02385008517887564, 0.020442930153321975, 0.018739352640545145, 0.015332197614991482, 0.015332197614991482, 0.013628620102214651, 0.013628620102214651, 0.010221465076660987, 0.008517887563884156, 0.005110732538330494, 0.005110732538330494, 0.0034071550255536627, 0.0017035775127768314, 0.0017035775127768314, 0.0017035775127768314, 0.0017035775127768314, 0.0017035775127768314, 0.47018739352640543, 0.47018739352640543, 0.47018739352640543, 0.47018739352640543, 0.47018739352640543, 0.47018739352640543, 0.47018739352640543, 0.0, 0.0, 0.0017035775127768314, 0.0017035775127768314, 0.0017035775127768314, 0.0017035775127768314, 0.0017035775127768314, 0.005110732538330494, 0.008517887563884156, 0.015332197614991482, 0.028960817717206135, 0.03747870528109029, 0.05110732538330494, 0.05792163543441227, 0.07836456558773425, 0.1686541737649063, 0.3577512776831346, 0.919931856899489], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HCBP_related.gap.json b/pfam_gap_rates/HCBP_related.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c828e65b0affcef0168f8abca8dfacbe7121d070
--- /dev/null
+++ b/pfam_gap_rates/HCBP_related.gap.json
@@ -0,0 +1 @@
+{"family": "HCBP_related", "n_seqs": 541, "length": 50, "gap_rates": [0.2532347504621072, 0.14972273567467653, 0.11460258780036968, 0.10720887245841035, 0.09981515711645102, 0.09057301293900184, 0.07948243992606285, 0.066543438077634, 0.04251386321626617, 0.09242144177449169, 0.944547134935305, 0.9463955637707948, 0.944547134935305, 0.944547134935305, 0.022181146025878003, 0.005545286506469501, 0.0018484288354898336, 0.0018484288354898336, 0.0018484288354898336, 0.0018484288354898336, 0.0018484288354898336, 0.0018484288354898336, 0.0018484288354898336, 0.009242144177449169, 0.3752310536044362, 0.7208872458410351, 0.8853974121996303, 0.8484288354898336, 0.678373382624769, 0.2698706099815157, 0.05730129390018484, 0.04621072088724584, 0.027726432532347505, 0.0073937153419593345, 0.005545286506469501, 0.005545286506469501, 0.012939001848428836, 0.0036968576709796672, 0.005545286506469501, 0.0166358595194085, 0.018484288354898338, 0.018484288354898338, 0.04251386321626617, 0.04251386321626617, 0.07393715341959335, 0.08687615526802218, 0.13493530499075784, 0.19408502772643252, 0.35304990757855825, 0.7707948243992606], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HHH_4.gap.json b/pfam_gap_rates/HHH_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a8e1586032ab28b5b88e7750b3b5d225034cd90d
--- /dev/null
+++ b/pfam_gap_rates/HHH_4.gap.json
@@ -0,0 +1 @@
+{"family": "HHH_4", "n_seqs": 828, "length": 93, "gap_rates": [0.6086956521739131, 0.30917874396135264, 0.20048309178743962, 0.12439613526570048, 0.0821256038647343, 0.0640096618357488, 0.04710144927536232, 0.036231884057971016, 0.030193236714975844, 0.026570048309178744, 0.020531400966183576, 0.016908212560386472, 0.014492753623188406, 0.014492753623188406, 0.013285024154589372, 0.010869565217391304, 0.004830917874396135, 0.0036231884057971015, 0.0036231884057971015, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.004830917874396135, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.010869565217391304, 0.0024154589371980675, 0.006038647342995169, 0.020531400966183576, 0.09782608695652174, 0.025362318840579712, 0.020531400966183576, 0.012077294685990338, 0.0036231884057971015, 0.0012077294685990338, 0.0012077294685990338, 0.0012077294685990338, 0.0012077294685990338, 0.0012077294685990338, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.004830917874396135, 0.9468599033816425, 0.014492753623188406, 0.013285024154589372, 0.007246376811594203, 0.00966183574879227, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.012077294685990338, 0.012077294685990338, 0.012077294685990338, 0.012077294685990338, 0.012077294685990338, 0.012077294685990338, 0.012077294685990338, 0.012077294685990338, 0.012077294685990338, 0.012077294685990338, 0.012077294685990338, 0.012077294685990338, 0.012077294685990338, 0.012077294685990338, 0.01570048309178744, 0.6376811594202898, 0.026570048309178744, 0.016908212560386472, 0.01570048309178744, 0.01570048309178744, 0.01932367149758454, 0.1606280193236715], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HLH.gap.json b/pfam_gap_rates/HLH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..04e42462ec37a0bc061fa1b38689aa2221ae25db
--- /dev/null
+++ b/pfam_gap_rates/HLH.gap.json
@@ -0,0 +1 @@
+{"family": "HLH", "n_seqs": 5000, "length": 77, "gap_rates": [0.6046, 0.4622, 0.3948, 0.2714, 0.1922, 0.1316, 0.11, 0.0866, 0.0772, 0.0444, 0.0426, 0.0382, 0.0336, 0.0256, 0.0156, 0.0106, 0.01, 0.0082, 0.0062, 0.0042, 0.0038, 0.0026, 0.003, 0.0028, 0.0028, 0.0026, 0.0026, 0.0028, 0.003, 0.7234, 0.0042, 0.7624, 0.8474, 0.8884, 0.9016, 0.9068, 0.9152, 0.9202, 0.925, 0.934, 0.9392, 0.9458, 0.9422, 0.9368, 0.9288, 0.9224, 0.918, 0.9108, 0.9034, 0.8946, 0.8592, 0.8328, 0.7048, 0.6476, 0.334, 0.2264, 0.0654, 0.0158, 0.9488, 0.016, 0.0158, 0.0166, 0.0172, 0.0186, 0.02, 0.02, 0.021, 0.0226, 0.025, 0.0264, 0.0328, 0.04, 0.0422, 0.0504, 0.1108, 0.1512, 0.5766], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HNH_2.gap.json b/pfam_gap_rates/HNH_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bdff00951fdbad6c266055664e3be742f4a738e7
--- /dev/null
+++ b/pfam_gap_rates/HNH_2.gap.json
@@ -0,0 +1 @@
+{"family": "HNH_2", "n_seqs": 918, "length": 119, "gap_rates": [0.17320261437908496, 0.16775599128540306, 0.16339869281045752, 0.14161220043572983, 0.1394335511982571, 0.8289760348583878, 0.9128540305010894, 0.9324618736383442, 0.8910675381263616, 0.7886710239651417, 0.18627450980392157, 0.27450980392156865, 0.2636165577342048, 0.14705882352941177, 0.7135076252723311, 0.7494553376906318, 0.8540305010893247, 0.8790849673202614, 0.8976034858387799, 0.9117647058823529, 0.920479302832244, 0.9379084967320261, 0.9498910675381264, 0.9444444444444444, 0.9270152505446623, 0.9150326797385621, 0.9084967320261438, 0.8856209150326797, 0.8594771241830066, 0.8082788671023965, 0.7298474945533769, 0.7080610021786492, 0.3159041394335512, 0.7320261437908496, 0.14052287581699346, 0.09041394335511982, 0.044662309368191724, 0.042483660130718956, 0.04139433551198257, 0.04139433551198257, 0.04139433551198257, 0.04139433551198257, 0.04139433551198257, 0.9368191721132898, 0.9433551198257081, 0.9498910675381264, 0.9477124183006536, 0.9368191721132898, 0.9368191721132898, 0.37254901960784315, 0.39869281045751637, 0.40305010893246185, 0.39760348583877997, 0.5631808278867102, 0.6089324618736384, 0.6459694989106753, 0.6688453159041394, 0.6437908496732027, 0.7004357298474946, 0.7472766884531591, 0.7799564270152506, 0.8159041394335512, 0.840958605664488, 0.8779956427015251, 0.906318082788671, 0.9313725490196079, 0.9422657952069716, 0.920479302832244, 0.8932461873638344, 0.8518518518518519, 0.8289760348583878, 0.7908496732026143, 0.7559912854030502, 0.7287581699346405, 0.6917211328976035, 0.6100217864923747, 0.19389978213507625, 0.1710239651416122, 0.1437908496732026, 0.14814814814814814, 0.1655773420479303, 0.6557734204793029, 0.6100217864923747, 0.49564270152505446, 0.4749455337690632, 0.46078431372549017, 0.4455337690631808, 0.43681917211328974, 0.43028322440087147, 0.4084967320261438, 0.3888888888888889, 0.3300653594771242, 0.2973856209150327, 0.09586056644880174, 0.03376906318082789, 0.0010893246187363835, 0.0010893246187363835, 0.0010893246187363835, 0.0010893246187363835, 0.0010893246187363835, 0.0010893246187363835, 0.0010893246187363835, 0.0010893246187363835, 0.0010893246187363835, 0.0010893246187363835, 0.002178649237472767, 0.004357298474945534, 0.006535947712418301, 0.006535947712418301, 0.008714596949891068, 0.010893246187363835, 0.014161220043572984, 0.02287581699346405, 0.06753812636165578, 0.08278867102396514, 0.09586056644880174, 0.12091503267973856, 0.15468409586056645, 0.6666666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HORMA.gap.json b/pfam_gap_rates/HORMA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eba809369f0d5fcdf94fb112038fdfa322b927b4
--- /dev/null
+++ b/pfam_gap_rates/HORMA.gap.json
@@ -0,0 +1 @@
+{"family": "HORMA", "n_seqs": 790, "length": 257, "gap_rates": [0.44050632911392407, 0.4316455696202532, 0.3962025316455696, 0.34177215189873417, 0.29873417721518986, 0.2291139240506329, 0.1810126582278481, 0.17215189873417722, 0.1620253164556962, 0.15822784810126583, 0.1468354430379747, 0.1468354430379747, 0.14430379746835442, 0.13670886075949368, 0.13037974683544304, 0.13037974683544304, 0.1291139240506329, 0.12658227848101267, 0.12658227848101267, 0.12531645569620253, 0.12658227848101267, 0.1240506329113924, 0.1240506329113924, 0.12278481012658228, 0.12278481012658228, 0.12151898734177215, 0.12151898734177215, 0.12151898734177215, 0.12151898734177215, 0.12151898734177215, 0.1189873417721519, 0.11645569620253164, 0.11772151898734177, 0.8607594936708861, 0.9025316455696203, 0.9050632911392406, 0.9075949367088607, 0.9126582278481012, 0.9139240506329114, 0.9151898734177215, 0.9189873417721519, 0.9265822784810127, 0.930379746835443, 0.9354430379746835, 0.9468354430379747, 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\ No newline at end of file
diff --git a/pfam_gap_rates/HSCB_C.gap.json b/pfam_gap_rates/HSCB_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f58d833bd15e5e817fa34b8bebe5ff3fa2966938
--- /dev/null
+++ b/pfam_gap_rates/HSCB_C.gap.json
@@ -0,0 +1 @@
+{"family": "HSCB_C", "n_seqs": 526, "length": 84, "gap_rates": [0.6939163498098859, 0.1596958174904943, 0.055133079847908745, 0.024714828897338403, 0.019011406844106463, 0.019011406844106463, 0.017110266159695818, 0.015209125475285171, 0.015209125475285171, 0.013307984790874524, 0.011406844106463879, 0.009505703422053232, 0.009505703422053232, 0.005703422053231939, 0.005703422053231939, 0.005703422053231939, 0.005703422053231939, 0.005703422053231939, 0.0038022813688212928, 0.4752851711026616, 0.6026615969581749, 0.47338403041825095, 0.31368821292775667, 0.03802281368821293, 0.07224334600760456, 0.9467680608365019, 0.8288973384030418, 0.005703422053231939, 0.005703422053231939, 0.005703422053231939, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0019011406844106464, 0.0038022813688212928, 0.005703422053231939, 0.005703422053231939, 0.0076045627376425855, 0.009505703422053232, 0.009505703422053232, 0.009505703422053232, 0.011406844106463879, 0.011406844106463879, 0.011406844106463879, 0.011406844106463879, 0.011406844106463879, 0.011406844106463879, 0.011406844106463879, 0.013307984790874524, 0.935361216730038, 0.9391634980988594, 0.9106463878326996, 0.026615969581749048, 0.045627376425855515, 0.019011406844106463, 0.8973384030418251, 0.9486692015209125, 0.7338403041825095, 0.017110266159695818, 0.017110266159695818, 0.013307984790874524, 0.013307984790874524, 0.013307984790874524, 0.013307984790874524, 0.015209125475285171, 0.015209125475285171, 0.017110266159695818, 0.017110266159695818, 0.017110266159695818, 0.017110266159695818, 0.019011406844106463, 0.019011406844106463, 0.02091254752851711, 0.02091254752851711, 0.02091254752851711, 0.026615969581749048, 0.026615969581749048, 0.04752851711026616, 0.09315589353612168, 0.17870722433460076, 0.6349809885931559], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_42.gap.json b/pfam_gap_rates/HTH_42.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c80b82334c63c4518b826ac9ecfacacb963bf70e
--- /dev/null
+++ b/pfam_gap_rates/HTH_42.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_42", "n_seqs": 907, "length": 408, "gap_rates": [0.42668136714443217, 0.25468577728776187, 0.19625137816979052, 0.17861080485115766, 0.16758544652701213, 0.1565600882028666, 0.15325248070562295, 0.15214994487320838, 0.15214994487320838, 0.14994487320837926, 0.14773980154355015, 0.5589856670341786, 0.5589856670341786, 0.5589856670341786, 0.5567805953693495, 0.1444321940463065, 0.13671444321940462, 0.13671444321940462, 0.13340683572216097, 0.13230429988974643, 0.13009922822491732, 0.13009922822491732, 0.12899669239250275, 0.12899669239250275, 0.12899669239250275, 0.1278941565600882, 0.1278941565600882, 0.1278941565600882, 0.1565600882028666, 0.14884233737596472, 0.1345093715545755, 0.13009922822491732, 0.12899669239250275, 0.12679162072767364, 0.1345093715545755, 0.13120176405733186, 0.1256890848952591, 0.12458654906284454, 0.8379272326350606, 0.938257993384785, 0.9250275633958104, 0.5667034178610805, 0.11907386990077178, 0.11797133406835722, 0.11466372657111357, 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\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_Tnp_IS630.gap.json b/pfam_gap_rates/HTH_Tnp_IS630.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25ec1e8b48e00ef5298ff815b1e4687a64ef1a7a
--- /dev/null
+++ b/pfam_gap_rates/HTH_Tnp_IS630.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_Tnp_IS630", "n_seqs": 324, "length": 133, "gap_rates": [0.6296296296296297, 0.5308641975308642, 0.2222222222222222, 0.2037037037037037, 0.19444444444444445, 0.1882716049382716, 0.1882716049382716, 0.18518518518518517, 0.18518518518518517, 0.18518518518518517, 0.18209876543209877, 0.1728395061728395, 0.1728395061728395, 0.17592592592592593, 0.16358024691358025, 0.15432098765432098, 0.904320987654321, 0.15123456790123457, 0.14814814814814814, 0.14506172839506173, 0.8148148148148148, 0.14814814814814814, 0.1111111111111111, 0.07716049382716049, 0.07098765432098765, 0.07098765432098765, 0.06790123456790123, 0.06790123456790123, 0.06790123456790123, 0.06790123456790123, 0.043209876543209874, 0.030864197530864196, 0.030864197530864196, 0.027777777777777776, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.027777777777777776, 0.027777777777777776, 0.030864197530864196, 0.030864197530864196, 0.033950617283950615, 0.033950617283950615, 0.05246913580246913, 0.046296296296296294, 0.06172839506172839, 0.08950617283950617, 0.941358024691358, 0.08950617283950617, 0.904320987654321, 0.15123456790123457, 0.10802469135802469, 0.09876543209876543, 0.08333333333333333, 0.07407407407407407, 0.20987654320987653, 0.10493827160493827, 0.09876543209876543, 0.5370370370370371, 0.6203703703703703, 0.7993827160493827, 0.8765432098765432, 0.6450617283950617, 0.5617283950617284, 0.5246913580246914, 0.09876543209876543, 0.10185185185185185, 0.8148148148148148, 0.09567901234567901, 0.09567901234567901, 0.09567901234567901, 0.09567901234567901, 0.09259259259259259, 0.09876543209876543, 0.10185185185185185, 0.09567901234567901, 0.09567901234567901, 0.09876543209876543, 0.09876543209876543, 0.09876543209876543, 0.10185185185185185, 0.1111111111111111, 0.1111111111111111, 0.11728395061728394, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.13580246913580246, 0.15123456790123457, 0.15123456790123457, 0.1574074074074074, 0.8209876543209876, 0.8179012345679012, 0.16049382716049382, 0.9290123456790124, 0.9290123456790124, 0.16358024691358025, 0.16358024691358025, 0.16358024691358025, 0.1697530864197531, 0.1697530864197531, 0.9382716049382716, 0.9351851851851852, 0.1697530864197531, 0.17901234567901234, 0.18209876543209877, 0.18209876543209877, 0.18209876543209877, 0.18518518518518517, 0.19135802469135801, 0.19753086419753085, 0.2006172839506173, 0.20987654320987653, 0.20987654320987653, 0.21296296296296297, 0.21604938271604937, 0.24074074074074073, 0.2623456790123457, 0.2993827160493827, 0.345679012345679, 0.43209876543209874, 0.4567901234567901, 0.4722222222222222, 0.5123456790123457, 0.6141975308641975, 0.6512345679012346, 0.6604938271604939, 0.6790123456790124, 0.8055555555555556, 0.8395061728395061, 0.9104938271604939, 0.9351851851851852], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/H_kinase_N.gap.json b/pfam_gap_rates/H_kinase_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f4dd4d81a2c0f5070f1950b81c0f053762c8b1f9
--- /dev/null
+++ b/pfam_gap_rates/H_kinase_N.gap.json
@@ -0,0 +1 @@
+{"family": "H_kinase_N", "n_seqs": 282, "length": 164, "gap_rates": [0.41843971631205673, 0.2553191489361702, 0.1524822695035461, 0.14184397163120568, 0.12411347517730496, 0.11347517730496454, 0.09574468085106383, 0.08865248226950355, 0.07446808510638298, 0.05319148936170213, 0.04964539007092199, 0.0425531914893617, 0.03900709219858156, 0.03900709219858156, 0.031914893617021274, 0.028368794326241134, 0.024822695035460994, 0.024822695035460994, 0.024822695035460994, 0.024822695035460994, 0.024822695035460994, 0.01773049645390071, 0.01773049645390071, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.01773049645390071, 0.02127659574468085, 0.01773049645390071, 0.02127659574468085, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.8085106382978723, 0.8581560283687943, 0.8936170212765957, 0.9397163120567376, 0.9468085106382979, 0.9432624113475178, 0.925531914893617, 0.875886524822695, 0.8333333333333334, 0.40425531914893614, 0.0425531914893617, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.010638297872340425, 0.01773049645390071, 0.024822695035460994, 0.014184397163120567, 0.024822695035460994, 0.024822695035460994, 0.010638297872340425, 0.01773049645390071, 0.010638297872340425, 0.010638297872340425, 0.014184397163120567, 0.014184397163120567, 0.010638297872340425, 0.014184397163120567, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.03546099290780142, 0.028368794326241134, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.8262411347517731, 0.010638297872340425, 0.010638297872340425, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.01773049645390071, 0.2198581560283688, 0.08865248226950355, 0.05673758865248227, 0.04964539007092199, 0.05319148936170213, 0.04964539007092199, 0.03546099290780142, 0.9432624113475178, 0.9148936170212766, 0.01773049645390071, 0.014184397163120567, 0.01773049645390071, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.07092198581560284, 0.010638297872340425, 0.010638297872340425, 0.8829787234042553, 0.9078014184397163, 0.925531914893617, 0.9397163120567376, 0.9361702127659575, 0.9219858156028369, 0.8971631205673759, 0.6631205673758865, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.028368794326241134, 0.02127659574468085, 0.0425531914893617, 0.03900709219858156, 0.04609929078014184, 0.0673758865248227, 0.08156028368794327, 0.09929078014184398, 0.1276595744680851, 0.1453900709219858, 0.1595744680851064, 0.1702127659574468, 0.18439716312056736, 0.20567375886524822, 0.2198581560283688, 0.23049645390070922, 0.24822695035460993, 0.2695035460992908, 0.2872340425531915, 0.3617021276595745, 0.4574468085106383], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/He_PIG.gap.json b/pfam_gap_rates/He_PIG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..646d6a8ec4acc6567c1985c7e43997e14be94336
--- /dev/null
+++ b/pfam_gap_rates/He_PIG.gap.json
@@ -0,0 +1 @@
+{"family": "He_PIG", "n_seqs": 1618, "length": 49, "gap_rates": [0.5006180469715699, 0.3399258343634116, 0.2972805933250927, 0.26452410383189123, 0.630407911001236, 0.6996291718170581, 0.6829419035846724, 0.4511742892459827, 0.33868974042027195, 0.12175525339925834, 0.02781211372064277, 0.019159456118665017, 0.00865265760197775, 0.003708281829419036, 0.0012360939431396785, 0.0006180469715698393, 0.0006180469715698393, 0.0, 0.157601977750309, 0.019777503090234856, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004326328800988875, 0.004326328800988875, 0.004944375772558714, 0.004326328800988875, 0.7583436341161929, 0.4635352286773795, 0.4796044499381953, 0.07911001236093942, 0.03522867737948084, 0.02904820766378245, 0.02533992583436341, 0.02904820766378245, 0.0315203955500618, 0.0407911001236094, 0.04882571075401731, 0.06860321384425216, 0.08281829419035847, 0.11310259579728059, 0.17181705809641531, 0.34239802224969096, 0.6823238566131026], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HemX.gap.json b/pfam_gap_rates/HemX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..280936c6e6931cd7f76ef8a9bdc490d4d9eb315a
--- /dev/null
+++ b/pfam_gap_rates/HemX.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Hemerythrin.gap.json b/pfam_gap_rates/Hemerythrin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ffabf88e90113232d9b00fd38275d99089b92930
--- /dev/null
+++ b/pfam_gap_rates/Hemerythrin.gap.json
@@ -0,0 +1 @@
+{"family": "Hemerythrin", "n_seqs": 3433, "length": 164, "gap_rates": [0.9283425575298573, 0.6114185843285755, 0.381299155257792, 0.25837459947567726, 0.1890474803378969, 0.13603262452665307, 0.11214681036993883, 0.09233906204485873, 0.07631808913486746, 0.06466647247305564, 0.06204485872414797, 0.05971453539178561, 0.05680163122633265, 0.053888727060879694, 0.053888727060879694, 0.05155840372851733, 0.048062918729973786, 0.048062918729973786, 0.05505388872706088, 0.05418001747742499, 0.9230993300320419, 0.05651034080978736, 0.056219050393242063, 0.04777162831342849, 0.04427614331488494, 0.04427614331488494, 0.06291872997378387, 0.7768715409263035, 0.27002621613748906, 0.28459073696475384, 0.43344013981939994, 0.44567433731430234, 0.4683949898048354, 0.5412175939411593, 0.5039324206233615, 0.7052140984561608, 0.8322167200699097, 0.9472764346053015, 0.9216428779493154, 0.7759976696766676, 0.5991843868336731, 0.11884648995048062, 0.06495776288960094, 0.038450334983979026, 0.029711622487620156, 0.020681619574715992, 0.017186134576172445, 0.01602097290999126, 0.013399359161083601, 0.011942907078357122, 0.012525487911447713, 0.010486454995630643, 0.00932129332944946, 0.0066996795805418004, 0.058258083309059135, 0.07224002330323333, 0.05767550247596854, 0.009030002912904166, 0.0037867754150888435, 0.003495484998543548, 0.003204194581998252, 0.003204194581998252, 0.0029129041654529565, 0.0026216137489076608, 0.0026216137489076608, 0.0026216137489076608, 0.02767258957180309, 0.8397902709000874, 0.8450334983979028, 0.8444509175648122, 0.8342557529857267, 0.06932711913778036, 0.06175356830760268, 0.06437518205651034, 0.060879697057966795, 0.0468977570637926, 0.7489076609379551, 0.8823186717157006, 0.922225458782406, 0.9411593358578503, 0.9452374016894844, 0.9338770754442178, 0.918147392950772, 0.8450334983979028, 0.5811243810078648, 0.4351878823186717, 0.29129041654529564, 0.23186717157005535, 0.21235071366152053, 0.20302942033207108, 0.17768715409263036, 0.16574424701427323, 0.15875327701718614, 0.154675211185552, 0.154675211185552, 0.010486454995630643, 0.009903874162540053, 0.013981939994174191, 0.01077774541217594, 0.010195164579085349, 0.009612583745994756, 0.011069035828721235, 0.011651616661811826, 0.012525487911447713, 0.012525487911447713, 0.01747742499271774, 0.017186134576172445, 0.018060005825808332, 0.018351296242353626, 0.018351296242353626, 0.018351296242353626, 0.016603553743081853, 0.7363821730265074, 0.03233323623652782, 0.03437226915234489, 0.02883775123798427, 0.025924847072531315, 0.027963879988348383, 0.04252840081561317, 0.06146227789105738, 0.8703757646373435, 0.9239732012816778, 0.8971744829595106, 0.8505680163122633, 0.5840372851733178, 0.5377221089426157, 0.48499854354791727, 0.3288668802796388, 0.2892513836294786, 0.1619574715991844, 0.10515584037285174, 0.10369938829012526, 0.045441304981066126, 0.6798718322167201, 0.7593941159335857, 0.9035828721235072, 0.9233906204485872, 0.8094960675793766, 0.698514418875619, 0.6463734343140111, 0.03204194581998252, 0.029129041654529567, 0.02883775123798427, 0.027963879988348383, 0.02825517040489368, 0.027963879988348383, 0.02883775123798427, 0.02942033207107486, 0.03029420332071075, 0.03087678415380134, 0.031750655403437224, 0.03233323623652782, 0.03408097873579959, 0.03786775415088844, 0.04485872414797553, 0.05709292164287795, 0.08447422079813574, 0.11214681036993883, 0.1535100495193708, 0.19807748325080105, 0.28342557529857265, 0.35158753277017185, 0.4491698223128459, 0.641421497232741], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hexapep.gap.json b/pfam_gap_rates/Hexapep.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49577aeb6a5f6475be9821661d2ac44be3d94cd6
--- /dev/null
+++ b/pfam_gap_rates/Hexapep.gap.json
@@ -0,0 +1 @@
+{"family": "Hexapep", "n_seqs": 5000, "length": 38, "gap_rates": [0.6456, 0.2174, 0.1434, 0.0958, 0.0804, 0.0678, 0.047, 0.0326, 0.022, 0.0096, 0.0082, 0.0204, 0.9384, 0.9282, 0.003, 0.0018, 0.0016, 0.0008, 0.054, 0.0002, 0.0002, 0.0, 0.005, 0.0002, 0.0004, 0.0008, 0.002, 0.0032, 0.0074, 0.01, 0.0204, 0.0318, 0.06, 0.067, 0.087, 0.1124, 0.2938, 0.6606], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Homoserine_dh.gap.json b/pfam_gap_rates/Homoserine_dh.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5926def36828ecf3a8e7f559878a5dd0c1e10bad
--- /dev/null
+++ b/pfam_gap_rates/Homoserine_dh.gap.json
@@ -0,0 +1 @@
+{"family": "Homoserine_dh", "n_seqs": 2307, "length": 214, "gap_rates": [0.052882531426094496, 0.04811443433029909, 0.04247941048981361, 0.03987863025574339, 0.03684438664932813, 0.03424360641525791, 0.7498916341569137, 0.032509752925877766, 0.031209362808842653, 0.028175119202427396, 0.022540095361941917, 0.01950585175552666, 0.019939315127871695, 0.01907238838318162, 0.01907238838318162, 0.018638925010836586, 0.018205461638491547, 0.017771998266146512, 0.017771998266146512, 0.017338534893801473, 0.016905071521456438, 0.016905071521456438, 0.0164716081491114, 0.0164716081491114, 0.016038144776766364, 0.016038144776766364, 0.015604681404421327, 0.014737754659731253, 0.014304291287386216, 0.014737754659731253, 0.014304291287386216, 0.014304291287386216, 0.014304291287386216, 0.013870827915041179, 0.013870827915041179, 0.014304291287386216, 0.24794104898136107, 0.017771998266146512, 0.9492847854356307, 0.014737754659731253, 0.02080624187256177, 0.013870827915041179, 0.013870827915041179, 0.013870827915041179, 0.013870827915041179, 0.014304291287386216, 0.014737754659731253, 0.01517121803207629, 0.014737754659731253, 0.01517121803207629, 0.01517121803207629, 0.014737754659731253, 0.016038144776766364, 0.01517121803207629, 0.014737754659731253, 0.014737754659731253, 0.014304291287386216, 0.014737754659731253, 0.015604681404421327, 0.015604681404421327, 0.017771998266146512, 0.017771998266146512, 0.018205461638491547, 0.018205461638491547, 0.018205461638491547, 0.018205461638491547, 0.018205461638491547, 0.017771998266146512, 0.017771998266146512, 0.017338534893801473, 0.017771998266146512, 0.016905071521456438, 0.017338534893801473, 0.017338534893801473, 0.017338534893801473, 0.017338534893801473, 0.017338534893801473, 0.017338534893801473, 0.016905071521456438, 0.2527091460771565, 0.01950585175552666, 0.01950585175552666, 0.018638925010836586, 0.017338534893801473, 0.9445166883398353, 0.018205461638491547, 0.018638925010836586, 0.017338534893801473, 0.017338534893801473, 0.017771998266146512, 0.01907238838318162, 0.017771998266146512, 0.017338534893801473, 0.018638925010836586, 0.018205461638491547, 0.01907238838318162, 0.7641959254442999, 0.764629388816645, 0.765496315561335, 0.7672301690507152, 0.7672301690507152, 0.7693974859124404, 0.7706978760294755, 0.9388816644993498, 0.94148244473342, 0.8209796272214998, 0.7698309492847855, 0.7680970957954053, 0.7672301690507152, 0.7659297789336801, 0.7650628521889901, 0.764629388816645, 0.7641959254442999, 0.021239705244906804, 0.03901170351105332, 0.043779800606848725, 0.04204594711746858, 0.03814477676636324, 0.02340702210663199, 0.777199826614651, 0.7850021673168617, 0.8010403120936281, 0.7919375812743823, 0.7780667533593412, 0.777199826614651, 0.02340702210663199, 0.022973558734286952, 0.021239705244906804, 0.02080624187256177, 0.021239705244906804, 0.021673168617251843, 0.022540095361941917, 0.022106631989596878, 0.01950585175552666, 0.01950585175552666, 0.018638925010836586, 0.01907238838318162, 0.01907238838318162, 0.01907238838318162, 0.018638925010836586, 0.01907238838318162, 0.023840485478977026, 0.06892067620286085, 0.22496749024707413, 0.28175119202427396, 0.8573905504984829, 0.8994364976159515, 0.9224100563502384, 0.8925010836584308, 0.7715648027741656, 0.27308192457737324, 0.18812310359774598, 0.03684438664932813, 0.02080624187256177, 0.9419159081057651, 0.9380147377546597, 0.033810143042912875, 0.019939315127871695, 0.01907238838318162, 0.01907238838318162, 0.01907238838318162, 0.01907238838318162, 0.01907238838318162, 0.018205461638491547, 0.017771998266146512, 0.018205461638491547, 0.017338534893801473, 0.017338534893801473, 0.016905071521456438, 0.016905071521456438, 0.016905071521456438, 0.0164716081491114, 0.03814477676636324, 0.017771998266146512, 0.016905071521456438, 0.016905071521456438, 0.017338534893801473, 0.016905071521456438, 0.016905071521456438, 0.016905071521456438, 0.016905071521456438, 0.0164716081491114, 0.0164716081491114, 0.016038144776766364, 0.016038144776766364, 0.0164716081491114, 0.018205461638491547, 0.018638925010836586, 0.01950585175552666, 0.017771998266146512, 0.7702644126571305, 0.752058951018639, 0.01907238838318162, 0.01907238838318162, 0.01907238838318162, 0.01907238838318162, 0.01950585175552666, 0.02037277850021673, 0.019939315127871695, 0.02037277850021673, 0.02037277850021673, 0.021239705244906804, 0.022106631989596878, 0.022540095361941917, 0.022973558734286952, 0.02340702210663199, 0.023840485478977026, 0.023840485478977026, 0.024273948851322065, 0.025140875596012136, 0.025140875596012136, 0.027308192457737322, 0.035543996532293023, 0.1508452535760728], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hormone_2.gap.json b/pfam_gap_rates/Hormone_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..58943716d13c287bda5e4bb0b4837155ab67cdcc
--- /dev/null
+++ b/pfam_gap_rates/Hormone_2.gap.json
@@ -0,0 +1 @@
+{"family": "Hormone_2", "n_seqs": 180, "length": 28, "gap_rates": [0.06111111111111111, 0.027777777777777776, 0.011111111111111112, 0.011111111111111112, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005555555555555556, 0.011111111111111112, 0.011111111111111112, 0.37777777777777777], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HupE_UreJ_2.gap.json b/pfam_gap_rates/HupE_UreJ_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7f02af5589fd9749ec47e8d1e5b259f457575d4e
--- /dev/null
+++ b/pfam_gap_rates/HupE_UreJ_2.gap.json
@@ -0,0 +1 @@
+{"family": "HupE_UreJ_2", "n_seqs": 408, "length": 174, "gap_rates": [0.16666666666666666, 0.08823529411764706, 0.05392156862745098, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.04411764705882353, 0.041666666666666664, 0.8284313725490197, 0.7181372549019608, 0.041666666666666664, 0.04411764705882353, 0.041666666666666664, 0.041666666666666664, 0.0392156862745098, 0.0392156862745098, 0.03676470588235294, 0.03676470588235294, 0.03431372549019608, 0.03431372549019608, 0.031862745098039214, 0.031862745098039214, 0.031862745098039214, 0.031862745098039214, 0.6740196078431373, 0.6691176470588235, 0.8553921568627451, 0.8578431372549019, 0.8602941176470589, 0.8651960784313726, 0.875, 0.8774509803921569, 0.8823529411764706, 0.8799019607843137, 0.8774509803921569, 0.8725490196078431, 0.8651960784313726, 0.8578431372549019, 0.8578431372549019, 0.8553921568627451, 0.051470588235294115, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.02696078431372549, 0.022058823529411766, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.029411764705882353, 0.029411764705882353, 0.4338235294117647, 0.8651960784313726, 0.946078431372549, 0.9313725490196079, 0.5637254901960784, 0.4534313725490196, 0.4117647058823529, 0.40441176470588236, 0.15196078431372548, 0.041666666666666664, 0.029411764705882353, 0.3431372549019608, 0.04411764705882353, 0.02696078431372549, 0.022058823529411766, 0.01715686274509804, 0.014705882352941176, 0.01715686274509804, 0.01715686274509804, 0.01715686274509804, 0.01715686274509804, 0.01715686274509804, 0.01715686274509804, 0.01715686274509804, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.024509803921568627, 0.024509803921568627, 0.02696078431372549, 0.04411764705882353, 0.03676470588235294, 0.031862745098039214, 0.03431372549019608, 0.02696078431372549, 0.031862745098039214, 0.031862745098039214, 0.051470588235294115, 0.03676470588235294, 0.03431372549019608, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.04411764705882353, 0.04411764705882353, 0.04656862745098039, 0.04656862745098039, 0.06372549019607843, 0.0784313725490196, 0.11029411764705882, 0.19362745098039216, 0.3627450980392157, 0.7450980392156863], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hypoth_Ymh.gap.json b/pfam_gap_rates/Hypoth_Ymh.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..191d8293e8c11b0b0ced18777816dbea96f6ace2
--- /dev/null
+++ b/pfam_gap_rates/Hypoth_Ymh.gap.json
@@ -0,0 +1 @@
+{"family": "Hypoth_Ymh", "n_seqs": 111, "length": 145, "gap_rates": [0.7027027027027027, 0.40540540540540543, 0.21621621621621623, 0.1891891891891892, 0.16216216216216217, 0.15315315315315314, 0.13513513513513514, 0.13513513513513514, 0.12612612612612611, 0.12612612612612611, 0.11711711711711711, 0.11711711711711711, 0.11711711711711711, 0.12612612612612611, 0.11711711711711711, 0.11711711711711711, 0.0990990990990991, 0.9279279279279279, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.09009009009009009, 0.09009009009009009, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.06306306306306306, 0.17117117117117117, 0.8918918918918919, 0.918918918918919, 0.9369369369369369, 0.9459459459459459, 0.9369369369369369, 0.9009009009009009, 0.7927927927927928, 0.0990990990990991, 0.7567567567567568, 0.7027027027027027, 0.10810810810810811, 0.10810810810810811, 0.10810810810810811, 0.10810810810810811, 0.07207207207207207, 0.07207207207207207, 0.06306306306306306, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.06306306306306306, 0.8828828828828829, 0.9369369369369369, 0.8288288288288288, 0.17117117117117117, 0.14414414414414414, 0.8828828828828829, 0.9009009009009009, 0.9099099099099099, 0.8828828828828829, 0.8828828828828829, 0.2072072072072072, 0.18018018018018017, 0.8918918918918919, 0.17117117117117117, 0.09009009009009009, 0.08108108108108109, 0.06306306306306306, 0.06306306306306306, 0.8918918918918919, 0.12612612612612611, 0.12612612612612611, 0.12612612612612611, 0.12612612612612611, 0.0990990990990991, 0.04504504504504504, 0.04504504504504504, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.04504504504504504, 0.05405405405405406, 0.02702702702702703, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.04504504504504504, 0.12612612612612611, 0.07207207207207207, 0.918918918918919, 0.9279279279279279, 0.9279279279279279, 0.918918918918919, 0.6486486486486487, 0.6036036036036037, 0.15315315315315314, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.06306306306306306, 0.07207207207207207, 0.07207207207207207, 0.08108108108108109, 0.11711711711711711, 0.18018018018018017, 0.27927927927927926], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IF3_N.gap.json b/pfam_gap_rates/IF3_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8c3ef04013a998455c256ea96c1109d07d7e77d
--- /dev/null
+++ b/pfam_gap_rates/IF3_N.gap.json
@@ -0,0 +1 @@
+{"family": "IF3_N", "n_seqs": 2329, "length": 70, "gap_rates": [0.40532417346500643, 0.339201373980249, 0.3267496779733791, 0.317732932589094, 0.31086303134392446, 0.3018462859596393, 0.29025332760841566, 0.27608415629025335, 0.2674967797337913, 0.26534993559467585, 0.20652640618291113, 0.2009446114212108, 0.16101331043366252, 0.1592958351223701, 0.15070845856590812, 0.14469729497638473, 0.15586088449978533, 0.1455560326320309, 0.19708029197080293, 0.1361099184199227, 0.1292400171747531, 0.11378273937312151, 0.07256333190210391, 0.06998711893516531, 0.068699012451696, 0.0631172176899957, 0.060970373550880204, 0.059252898239587806, 0.05238299699441821, 0.0420781451266638, 0.0197509660798626, 0.018892228424216402, 0.0184628595963933, 0.017174753112924, 0.017174753112924, 0.016745384285100903, 0.010734220695577501, 0.010734220695577501, 0.010734220695577501, 0.010304851867754402, 0.0060111635895234005, 0.006440532417346501, 0.005152425933877201, 0.016316015457277802, 0.0055817947617003, 0.015027908973808502, 0.008158007728638901, 0.0055817947617003, 0.0055817947617003, 0.005152425933877201, 0.004293688278231, 0.004293688278231, 0.004293688278231, 0.0047230571060541005, 0.019321597252039503, 0.009016745384285102, 0.008587376556462, 0.0111635895234006, 0.0111635895234006, 0.012881064834693002, 0.015027908973808502, 0.015457277801631602, 0.017174753112924, 0.018033490768570203, 0.019321597252039503, 0.0210390725633319, 0.0313439244310863, 0.0605410047230571, 0.1352511807642765, 0.40961786174323744], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IRS.gap.json b/pfam_gap_rates/IRS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fde061012c46e007b9b26bb277dbcff240e435da
--- /dev/null
+++ b/pfam_gap_rates/IRS.gap.json
@@ -0,0 +1 @@
+{"family": "IRS", "n_seqs": 463, "length": 107, "gap_rates": [0.7516198704103672, 0.5205183585313174, 0.38660907127429806, 0.3369330453563715, 0.3282937365010799, 0.31533477321814257, 0.5637149028077754, 0.5550755939524838, 0.550755939524838, 0.42332613390928725, 0.2980561555075594, 0.2915766738660907, 0.27429805615550756, 0.265658747300216, 0.2505399568034557, 0.24838012958963282, 0.24190064794816415, 0.23110151187904968, 0.21382289416846653, 0.9200863930885529, 0.1857451403887689, 0.1771058315334773, 0.15334773218142547, 0.12311015118790497, 0.0755939524838013, 0.06695464362850972, 0.06695464362850972, 0.056155507559395246, 0.056155507559395246, 0.05399568034557235, 0.05399568034557235, 0.05399568034557235, 0.05399568034557235, 0.05399568034557235, 0.05399568034557235, 0.9092872570194385, 0.9438444924406048, 0.9330453563714903, 0.7580993520518359, 0.27429805615550756, 0.24622030237580994, 0.06263498920086392, 0.056155507559395246, 0.047516198704103674, 0.04319654427645788, 0.038876889848812095, 0.03455723542116631, 0.02591792656587473, 0.017278617710583154, 0.017278617710583154, 0.01511879049676026, 0.01511879049676026, 0.017278617710583154, 0.01511879049676026, 0.01511879049676026, 0.01511879049676026, 0.01511879049676026, 0.01511879049676026, 0.012958963282937365, 0.012958963282937365, 0.01511879049676026, 0.9330453563714903, 0.012958963282937365, 0.01079913606911447, 0.017278617710583154, 0.019438444924406047, 0.019438444924406047, 0.019438444924406047, 0.019438444924406047, 0.019438444924406047, 0.019438444924406047, 0.019438444924406047, 0.04103671706263499, 0.04535637149028078, 0.047516198704103674, 0.02591792656587473, 0.04319654427645788, 0.09287257019438445, 0.0734341252699784, 0.06695464362850972, 0.028077753779697623, 0.02591792656587473, 0.02591792656587473, 0.02591792656587473, 0.028077753779697623, 0.028077753779697623, 0.032397408207343416, 0.032397408207343416, 0.7991360691144709, 0.8077753779697624, 0.796976241900648, 0.04535637149028078, 0.047516198704103674, 0.047516198704103674, 0.05399568034557235, 0.056155507559395246, 0.08639308855291576, 0.09287257019438445, 0.10151187904967603, 0.11447084233261338, 0.1447084233261339, 0.16414686825053995, 0.19222462203023757, 0.2548596112311015, 0.4168466522678186, 0.5874730021598272, 0.7580993520518359], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IalB.gap.json b/pfam_gap_rates/IalB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..07b800fd722f5883be36db7b5474e6caebb479af
--- /dev/null
+++ b/pfam_gap_rates/IalB.gap.json
@@ -0,0 +1 @@
+{"family": "IalB", "n_seqs": 293, "length": 145, "gap_rates": [0.36177474402730375, 0.17406143344709898, 0.08532423208191127, 0.05802047781569966, 0.05802047781569966, 0.05802047781569966, 0.05802047781569966, 0.05802047781569966, 0.05802047781569966, 0.05802047781569966, 0.05802047781569966, 0.05802047781569966, 0.27986348122866894, 0.89419795221843, 0.5426621160409556, 0.11262798634812286, 0.11604095563139932, 0.09556313993174062, 0.9249146757679181, 0.9385665529010239, 0.8907849829351536, 0.05460750853242321, 0.04778156996587031, 0.04778156996587031, 0.04778156996587031, 0.04778156996587031, 0.04436860068259386, 0.04436860068259386, 0.04436860068259386, 0.04436860068259386, 0.04436860068259386, 0.04436860068259386, 0.4880546075085324, 0.06484641638225255, 0.04778156996587031, 0.04436860068259386, 0.04436860068259386, 0.04436860068259386, 0.04436860068259386, 0.04778156996587031, 0.04778156996587031, 0.04778156996587031, 0.04436860068259386, 0.04436860068259386, 0.04436860068259386, 0.04436860068259386, 0.04436860068259386, 0.040955631399317405, 0.78839590443686, 0.9453924914675768, 0.7303754266211604, 0.22184300341296928, 0.8976109215017065, 0.06484641638225255, 0.034129692832764506, 0.034129692832764506, 0.030716723549488054, 0.030716723549488054, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.030716723549488054, 0.030716723549488054, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.034129692832764506, 0.034129692832764506, 0.027303754266211604, 0.8327645051194539, 0.030716723549488054, 0.034129692832764506, 0.040955631399317405, 0.040955631399317405, 0.034129692832764506, 0.03754266211604096, 0.027303754266211604, 0.023890784982935155, 0.023890784982935155, 0.023890784982935155, 0.023890784982935155, 0.05460750853242321, 0.030716723549488054, 0.027303754266211604, 0.020477815699658702, 0.020477815699658702, 0.020477815699658702, 0.017064846416382253, 0.013651877133105802, 0.006825938566552901, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.006825938566552901, 0.0034129692832764505, 0.0034129692832764505, 0.017064846416382253, 0.8225255972696246, 0.7542662116040956, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.006825938566552901, 0.006825938566552901, 0.010238907849829351, 0.010238907849829351, 0.013651877133105802, 0.040955631399317405, 0.2627986348122867], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ig_2.gap.json b/pfam_gap_rates/Ig_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d4dbbb20e263a292750a635cf64c9e00ecbbfa05
--- /dev/null
+++ b/pfam_gap_rates/Ig_2.gap.json
@@ -0,0 +1 @@
+{"family": "Ig_2", "n_seqs": 1734, "length": 119, "gap_rates": [0.8973471741637832, 0.6949250288350635, 0.6182237600922722, 0.5317185697808535, 0.4815455594002307, 0.4279123414071511, 0.3846597462514418, 0.3621683967704729, 0.9284890426758939, 0.7226066897347174, 0.2104959630911188, 0.18108419838523646, 0.13264129181084197, 0.11130334486735871, 0.08419838523644751, 0.058246828143021914, 0.040369088811995385, 0.03229527104959631, 0.03806228373702422, 0.02883506343713956, 0.010957324106113034, 0.007497116493656286, 0.008073817762399077, 0.00865051903114187, 0.007497116493656286, 0.006920415224913495, 0.7998846597462514, 0.9042675893886967, 0.9279123414071511, 0.881199538638985, 0.6626297577854672, 0.005190311418685121, 0.06862745098039216, 0.18166089965397925, 0.0461361014994233, 0.7566320645905421, 0.03344867358708189, 0.0005767012687427913, 0.9302191464821222, 0.9452133794694348, 0.9123414071510957, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0005767012687427913, 0.0005767012687427913, 0.8558246828143022, 0.9348327566320646, 0.9186851211072664, 0.8189158016147635, 0.0005767012687427913, 0.011534025374855825, 0.007497116493656286, 0.0017301038062283738, 0.6136101499423299, 0.8073817762399077, 0.9036908881199539, 0.9498269896193772, 0.9284890426758939, 0.8610149942329873, 0.7243367935409458, 0.5103806228373703, 0.0034602076124567475, 0.07785467128027682, 0.07785467128027682, 0.016147635524798153, 0.5346020761245674, 0.7381776239907728, 0.8212226066897347, 0.9071510957324106, 0.9279123414071511, 0.8656286043829297, 0.7837370242214533, 0.6401384083044983, 0.370242214532872, 0.11361014994232987, 0.04844290657439446, 0.031718569780853516, 0.9463667820069204, 0.8737024221453287, 0.025951557093425604, 0.01845444059976932, 0.0034602076124567475, 0.0034602076124567475, 0.00461361014994233, 0.002306805074971165, 0.002306805074971165, 0.004036908881199538, 0.004036908881199538, 0.004036908881199538, 0.004036908881199538, 0.00461361014994233, 0.004036908881199538, 0.004036908881199538, 0.006920415224913495, 0.9019607843137255, 0.9325259515570934, 0.8725490196078431, 0.016724336793540944, 0.034025374855824686, 0.15628604382929642, 0.10957324106113034, 0.18223760092272204, 0.8933102652825836, 0.947520184544406, 0.8143021914648212, 0.16089965397923875, 0.1787773933102653, 0.1839677047289504, 0.19953863898500576, 0.22549019607843138, 0.25432525951557095, 0.2773933102652826, 0.32122260668973474, 0.34544405997693195, 0.47520184544405997, 0.6176470588235294], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IlvC.gap.json b/pfam_gap_rates/IlvC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a0455efcc172d5e5cba3672f73056b5b2137ada5
--- /dev/null
+++ b/pfam_gap_rates/IlvC.gap.json
@@ -0,0 +1 @@
+{"family": "IlvC", "n_seqs": 2016, "length": 149, "gap_rates": [0.16964285714285715, 0.12251984126984126, 0.11507936507936507, 0.11458333333333333, 0.11160714285714286, 0.10813492063492064, 0.10664682539682539, 0.10466269841269842, 0.09424603174603174, 0.07242063492063493, 0.07043650793650794, 0.0679563492063492, 0.060515873015873016, 0.06349206349206349, 0.04365079365079365, 0.040674603174603176, 0.036210317460317464, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011408730158730158, 0.010912698412698412, 0.011408730158730158, 0.00992063492063492, 0.00992063492063492, 0.009424603174603174, 0.00992063492063492, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008432539682539682, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008432539682539682, 0.00744047619047619, 0.007936507936507936, 0.008928571428571428, 0.008928571428571428, 0.008432539682539682, 0.008432539682539682, 0.008432539682539682, 0.008432539682539682, 0.008432539682539682, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.00744047619047619, 0.8323412698412699, 0.00744047619047619, 0.007936507936507936, 0.007936507936507936, 0.008432539682539682, 0.008432539682539682, 0.007936507936507936, 0.008432539682539682, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.00744047619047619, 0.007936507936507936, 0.006944444444444444, 0.006944444444444444, 0.007936507936507936, 0.008432539682539682, 0.008432539682539682, 0.008432539682539682, 0.008432539682539682, 0.009424603174603174, 0.009424603174603174, 0.008928571428571428, 0.008928571428571428, 0.00992063492063492, 0.00992063492063492, 0.00992063492063492, 0.00992063492063492, 0.00992063492063492, 0.015376984126984126, 0.019345238095238096, 0.017361111111111112, 0.01984126984126984, 0.29017857142857145, 0.060515873015873016, 0.05555555555555555, 0.056051587301587304, 0.05109126984126984, 0.03422619047619048, 0.02628968253968254, 0.02976190476190476, 0.03373015873015873, 0.03571428571428571, 0.036210317460317464, 0.036210317460317464, 0.03670634920634921, 0.03670634920634921, 0.037698412698412696, 0.03819444444444445, 0.03968253968253968, 0.0441468253968254, 0.03968253968253968, 0.04017857142857143, 0.03968253968253968, 0.039186507936507936, 0.046130952380952384, 0.049107142857142856, 0.054563492063492064, 0.05109126984126984, 0.046130952380952384, 0.04563492063492063, 0.9241071428571429, 0.9141865079365079, 0.04563492063492063, 0.0689484126984127, 0.05803571428571429, 0.8581349206349206, 0.8174603174603174, 0.05109126984126984, 0.04811507936507937, 0.04265873015873016, 0.04265873015873016, 0.04265873015873016, 0.043154761904761904, 0.04365079365079365, 0.04365079365079365, 0.044642857142857144, 0.08333333333333333, 0.08283730158730158, 0.08283730158730158, 0.08234126984126984, 0.0441468253968254, 0.0441468253968254, 0.0441468253968254, 0.0441468253968254, 0.044642857142857144, 0.04513888888888889, 0.061507936507936505, 0.0992063492063492, 0.10863095238095238, 0.11210317460317461, 0.11805555555555555, 0.12053571428571429, 0.1259920634920635, 0.12896825396825398, 0.14781746031746032, 0.18353174603174602, 0.4573412698412698], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IlvN.gap.json b/pfam_gap_rates/IlvN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21c3b9d298061bd6eb9bcbdee5ab0a2cb95c64ce
--- /dev/null
+++ b/pfam_gap_rates/IlvN.gap.json
@@ -0,0 +1 @@
+{"family": "IlvN", "n_seqs": 1845, "length": 180, "gap_rates": [0.8850948509485095, 0.0910569105691057, 0.08075880758807588, 0.07371273712737128, 0.03197831978319783, 0.023306233062330622, 0.022764227642276424, 0.022764227642276424, 0.022764227642276424, 0.022764227642276424, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.02168021680216802, 0.02113821138211382, 0.020596205962059622, 0.020596205962059622, 0.020596205962059622, 0.020596205962059622, 0.020596205962059622, 0.020596205962059622, 0.02005420054200542, 0.017344173441734417, 0.016802168021680216, 0.016802168021680216, 0.016802168021680216, 0.016260162601626018, 0.015718157181571817, 0.8888888888888888, 0.015176151761517615, 0.015176151761517615, 0.015718157181571817, 0.014634146341463415, 0.015176151761517615, 0.014634146341463415, 0.014634146341463415, 0.015176151761517615, 0.014634146341463415, 0.015176151761517615, 0.9159891598915989, 0.9176151761517615, 0.9176151761517615, 0.9170731707317074, 0.9149051490514906, 0.14471544715447154, 0.014634146341463415, 0.014092140921409214, 0.014092140921409214, 0.014092140921409214, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.015176151761517615, 0.014634146341463415, 0.014634146341463415, 0.8861788617886179, 0.8861788617886179, 0.8861788617886179, 0.8861788617886179, 0.014634146341463415, 0.014092140921409214, 0.015718157181571817, 0.015718157181571817, 0.016260162601626018, 0.017344173441734417, 0.017344173441734417, 0.017344173441734417, 0.01788617886178862, 0.01788617886178862, 0.01788617886178862, 0.01842818428184282, 0.01842818428184282, 0.01842818428184282, 0.018970189701897018, 0.016802168021680216, 0.016260162601626018, 0.016802168021680216, 0.01788617886178862, 0.02168021680216802, 0.02005420054200542, 0.02005420054200542, 0.020596205962059622, 0.020596205962059622, 0.02005420054200542, 0.02005420054200542, 0.02005420054200542, 0.020596205962059622, 0.2834688346883469, 0.02113821138211382, 0.02113821138211382, 0.02113821138211382, 0.02168021680216802, 0.022222222222222223, 0.020596205962059622, 0.01842818428184282, 0.018970189701897018, 0.020596205962059622, 0.022764227642276424, 0.02005420054200542, 0.02113821138211382, 0.02113821138211382, 0.02113821138211382, 0.022764227642276424, 0.022764227642276424, 0.022764227642276424, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022764227642276424, 0.022764227642276424, 0.022764227642276424, 0.023306233062330622, 0.9073170731707317, 0.9073170731707317, 0.9073170731707317, 0.023306233062330622, 0.023848238482384824, 0.023306233062330622, 0.022764227642276424, 0.024390243902439025, 0.023306233062330622, 0.023306233062330622, 0.023306233062330622, 0.024390243902439025, 0.024390243902439025, 0.023306233062330622, 0.022764227642276424, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022764227642276424, 0.022764227642276424, 0.022764227642276424, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.026016260162601626, 0.026558265582655827, 0.026558265582655827, 0.028184281842818428, 0.028184281842818428, 0.028184281842818428, 0.028184281842818428, 0.028184281842818428, 0.02710027100271003, 0.02710027100271003, 0.02710027100271003, 0.02710027100271003, 0.02710027100271003, 0.028184281842818428, 0.027642276422764227, 0.027642276422764227, 0.028184281842818428, 0.028184281842818428, 0.9197831978319784, 0.9192411924119241, 0.028184281842818428, 0.028184281842818428, 0.02926829268292683, 0.030894308943089432, 0.02926829268292683, 0.02926829268292683, 0.02926829268292683, 0.02926829268292683, 0.02926829268292683, 0.02926829268292683, 0.02926829268292683, 0.02926829268292683, 0.02926829268292683, 0.03035230352303523, 0.03035230352303523, 0.03035230352303523, 0.03035230352303523, 0.030894308943089432, 0.03360433604336043, 0.03360433604336043, 0.18644986449864498, 0.2043360433604336, 0.20542005420054202, 0.22926829268292684], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Integrin_b_cyt.gap.json b/pfam_gap_rates/Integrin_b_cyt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0521bf0a9ef583856aeffcd2492440dac82a24cb
--- /dev/null
+++ b/pfam_gap_rates/Integrin_b_cyt.gap.json
@@ -0,0 +1 @@
+{"family": "Integrin_b_cyt", "n_seqs": 249, "length": 46, "gap_rates": [0.06827309236947791, 0.06827309236947791, 0.05622489959839357, 0.03614457831325301, 0.0321285140562249, 0.028112449799196786, 0.020080321285140562, 0.01606425702811245, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.028112449799196786, 0.020080321285140562, 0.008032128514056224, 0.09236947791164658, 0.08032128514056225, 0.08032128514056225, 0.08433734939759036, 0.08433734939759036, 0.08433734939759036, 0.08433734939759036, 0.08433734939759036, 0.08433734939759036, 0.08835341365461848, 0.08835341365461848, 0.08835341365461848, 0.08835341365461848, 0.09236947791164658, 0.9477911646586346, 0.11646586345381527, 0.12048192771084337, 0.12449799196787148, 0.1566265060240964, 0.5582329317269076], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ion_trans_2.gap.json b/pfam_gap_rates/Ion_trans_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..17660d9b35d8bdbbad16569d0a76dbdae132753b
--- /dev/null
+++ b/pfam_gap_rates/Ion_trans_2.gap.json
@@ -0,0 +1 @@
+{"family": "Ion_trans_2", "n_seqs": 5000, "length": 101, "gap_rates": [0.7274, 0.567, 0.4876, 0.4392, 0.4158, 0.402, 0.39, 0.3806, 0.3688, 0.356, 0.3476, 0.3448, 0.3454, 0.3454, 0.2874, 0.6884, 0.756, 0.8222, 0.8764, 0.9126, 0.938, 0.949, 0.9278, 0.8976, 0.853, 0.7898, 0.7296, 0.663, 0.5806, 0.6088, 0.5988, 0.9028, 0.2936, 0.2828, 0.9466, 0.1618, 0.1274, 0.0656, 0.0548, 0.0494, 0.0442, 0.041, 0.0372, 0.0358, 0.035, 0.0346, 0.0324, 0.0294, 0.0276, 0.0242, 0.0228, 0.0214, 0.017, 0.007, 0.0054, 0.0044, 0.0062, 0.0062, 0.0066, 0.008, 0.0086, 0.877, 0.0128, 0.0156, 0.0162, 0.9066, 0.9142, 0.9264, 0.9472, 0.9184, 0.9106, 0.9014, 0.1052, 0.028, 0.0204, 0.0204, 0.0194, 0.938, 0.0202, 0.0212, 0.0222, 0.0226, 0.0232, 0.0242, 0.025, 0.0274, 0.0288, 0.0296, 0.0342, 0.0406, 0.0464, 0.0502, 0.0572, 0.074, 0.089, 0.1056, 0.15, 0.2138, 0.3012, 0.4044, 0.7346], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Iron_traffic.gap.json b/pfam_gap_rates/Iron_traffic.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..28f9f7a6e38e46c95e2b3e87505b6eca35464b17
--- /dev/null
+++ b/pfam_gap_rates/Iron_traffic.gap.json
@@ -0,0 +1 @@
+{"family": "Iron_traffic", "n_seqs": 355, "length": 89, "gap_rates": [0.15492957746478872, 0.13802816901408452, 0.09014084507042254, 0.059154929577464786, 0.04507042253521127, 0.04225352112676056, 0.04225352112676056, 0.03943661971830986, 0.028169014084507043, 0.02535211267605634, 0.01971830985915493, 0.01971830985915493, 0.01971830985915493, 0.01971830985915493, 0.01971830985915493, 0.01971830985915493, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.011267605633802818, 0.011267605633802818, 0.008450704225352112, 0.008450704225352112, 0.008450704225352112, 0.008450704225352112, 0.008450704225352112, 0.008450704225352112, 0.008450704225352112, 0.008450704225352112, 0.008450704225352112, 0.008450704225352112, 0.008450704225352112, 0.0, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.008450704225352112, 0.016901408450704224, 0.028169014084507043, 0.03943661971830986, 0.04788732394366197, 0.9492957746478873, 0.059154929577464786, 0.07887323943661972, 0.08732394366197183, 0.09295774647887324, 0.10140845070422536, 0.10422535211267606, 0.10422535211267606, 0.10422535211267606, 0.11830985915492957, 0.3492957746478873], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IucA_IucC.gap.json b/pfam_gap_rates/IucA_IucC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9c3d67dbe2bcaa55251d3672ed8089b1fae46930
--- /dev/null
+++ b/pfam_gap_rates/IucA_IucC.gap.json
@@ -0,0 +1 @@
+{"family": "IucA_IucC", "n_seqs": 458, "length": 263, "gap_rates": [0.7641921397379913, 0.3078602620087336, 0.18777292576419213, 0.14192139737991266, 0.11135371179039301, 0.10043668122270742, 0.08078602620087336, 0.07641921397379912, 0.9301310043668122, 0.06986899563318777, 0.18340611353711792, 0.06550218340611354, 0.06550218340611354, 0.06550218340611354, 0.06550218340611354, 0.06550218340611354, 0.06550218340611354, 0.06550218340611354, 0.06550218340611354, 0.06550218340611354, 0.06550218340611354, 0.06550218340611354, 0.06768558951965066, 0.06986899563318777, 0.06768558951965066, 0.07860262008733625, 0.07641921397379912, 0.07641921397379912, 0.06986899563318777, 0.08951965065502183, 0.06550218340611354, 0.0611353711790393, 0.06331877729257641, 0.06331877729257641, 0.06331877729257641, 0.06550218340611354, 0.06768558951965066, 0.06768558951965066, 0.06768558951965066, 0.07423580786026202, 0.06768558951965066, 0.07641921397379912, 0.06768558951965066, 0.06550218340611354, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Iwr1.gap.json b/pfam_gap_rates/Iwr1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1983bc1d3d7ba6342a3e51005bef9b75b4ab05f1
--- /dev/null
+++ b/pfam_gap_rates/Iwr1.gap.json
@@ -0,0 +1 @@
+{"family": "Iwr1", "n_seqs": 246, "length": 94, "gap_rates": [0.491869918699187, 0.16260162601626016, 0.12195121951219512, 0.11382113821138211, 0.0975609756097561, 0.09349593495934959, 0.09349593495934959, 0.09349593495934959, 0.11788617886178862, 0.11382113821138211, 0.8699186991869918, 0.8943089430894309, 0.9105691056910569, 0.9186991869918699, 0.9308943089430894, 0.9390243902439024, 0.9471544715447154, 0.9390243902439024, 0.9390243902439024, 0.9227642276422764, 0.9105691056910569, 0.9065040650406504, 0.8780487804878049, 0.8699186991869918, 0.16260162601626016, 0.6504065040650406, 0.5, 0.9349593495934959, 0.7967479674796748, 0.3943089430894309, 0.3089430894308943, 0.26422764227642276, 0.1991869918699187, 0.18292682926829268, 0.15447154471544716, 0.10569105691056911, 0.0975609756097561, 0.09349593495934959, 0.08536585365853659, 0.08130081300813008, 0.07317073170731707, 0.07317073170731707, 0.06910569105691057, 0.06910569105691057, 0.07317073170731707, 0.08130081300813008, 0.8699186991869918, 0.08536585365853659, 0.0975609756097561, 0.07723577235772358, 0.06504065040650407, 0.06097560975609756, 0.056910569105691054, 0.14227642276422764, 0.11382113821138211, 0.10569105691056911, 0.9471544715447154, 0.926829268292683, 0.6747967479674797, 0.5447154471544715, 0.3617886178861789, 0.2764227642276423, 0.15447154471544716, 0.12601626016260162, 0.06097560975609756, 0.024390243902439025, 0.07317073170731707, 0.17886178861788618, 0.14634146341463414, 0.9308943089430894, 0.37398373983739835, 0.12195121951219512, 0.07317073170731707, 0.06097560975609756, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0040650406504065045, 0.0040650406504065045, 0.02032520325203252, 0.02032520325203252, 0.024390243902439025, 0.028455284552845527, 0.028455284552845527, 0.032520325203252036, 0.028455284552845527, 0.028455284552845527, 0.028455284552845527, 0.028455284552845527, 0.028455284552845527, 0.036585365853658534, 0.18292682926829268], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KAP_NTPase.gap.json b/pfam_gap_rates/KAP_NTPase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..db5f01d4401e430fdf0fdcff7c5ca78f21d52491
--- /dev/null
+++ b/pfam_gap_rates/KAP_NTPase.gap.json
@@ -0,0 +1 @@
+{"family": "KAP_NTPase", "n_seqs": 546, "length": 558, "gap_rates": [0.7564102564102564, 0.6483516483516484, 0.5494505494505495, 0.5054945054945055, 0.45787545787545786, 0.43040293040293043, 0.3974358974358974, 0.3626373626373626, 0.35714285714285715, 0.3443223443223443, 0.33516483516483514, 0.32234432234432236, 0.31684981684981683, 0.34615384615384615, 0.33882783882783885, 0.5018315018315018, 0.5604395604395604, 0.9413919413919414, 0.2509157509157509, 0.23809523809523808, 0.21978021978021978, 0.21978021978021978, 0.20695970695970695, 0.20146520146520147, 0.2032967032967033, 0.1978021978021978, 0.19413919413919414, 0.19230769230769232, 0.19047619047619047, 0.19047619047619047, 0.18864468864468864, 0.18864468864468864, 0.18864468864468864, 0.18864468864468864, 0.18864468864468864, 0.18864468864468864, 0.18315018315018314, 0.18315018315018314, 0.1813186813186813, 0.1813186813186813, 0.18681318681318682, 0.18864468864468864, 0.18681318681318682, 0.19413919413919414, 0.19230769230769232, 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\ No newline at end of file
diff --git a/pfam_gap_rates/KBP_C.gap.json b/pfam_gap_rates/KBP_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b9ba9e2104c6f00cf304f5ecfc20ba413dc393f4
--- /dev/null
+++ b/pfam_gap_rates/KBP_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Katanin_con80.gap.json b/pfam_gap_rates/Katanin_con80.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d408bec22afae986bd67ca09b9e24e62ba9e626e
--- /dev/null
+++ b/pfam_gap_rates/Katanin_con80.gap.json
@@ -0,0 +1 @@
+{"family": "Katanin_con80", "n_seqs": 228, "length": 174, "gap_rates": [0.6096491228070176, 0.24561403508771928, 0.21052631578947367, 0.17105263157894737, 0.15350877192982457, 0.14035087719298245, 0.13157894736842105, 0.11842105263157894, 0.11842105263157894, 0.11842105263157894, 0.11842105263157894, 0.11842105263157894, 0.11842105263157894, 0.11403508771929824, 0.10964912280701754, 0.10526315789473684, 0.10526315789473684, 0.10087719298245613, 0.09649122807017543, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10087719298245613, 0.10087719298245613, 0.10087719298245613, 0.10087719298245613, 0.09649122807017543, 0.10087719298245613, 0.14035087719298245, 0.09210526315789473, 0.07894736842105263, 0.07017543859649122, 0.07456140350877193, 0.07456140350877193, 0.07456140350877193, 0.07456140350877193, 0.07456140350877193, 0.07894736842105263, 0.07894736842105263, 0.9342105263157895, 0.9385964912280702, 0.9210526315789473, 0.08333333333333333, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07456140350877193, 0.07456140350877193, 0.09210526315789473, 0.08771929824561403, 0.08771929824561403, 0.08333333333333333, 0.08333333333333333, 0.07894736842105263, 0.07456140350877193, 0.7763157894736842, 0.07456140350877193, 0.08333333333333333, 0.07894736842105263, 0.10526315789473684, 0.8421052631578947, 0.9473684210526315, 0.8771929824561403, 0.7456140350877193, 0.07894736842105263, 0.07894736842105263, 0.07894736842105263, 0.07894736842105263, 0.07456140350877193, 0.07456140350877193, 0.07456140350877193, 0.07456140350877193, 0.07456140350877193, 0.07894736842105263, 0.07894736842105263, 0.07894736842105263, 0.07894736842105263, 0.07894736842105263, 0.08771929824561403, 0.08771929824561403, 0.09210526315789473, 0.09210526315789473, 0.09649122807017543, 0.10087719298245613, 0.09210526315789473, 0.09210526315789473, 0.09210526315789473, 0.07894736842105263, 0.10087719298245613, 0.10964912280701754, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10964912280701754, 0.10964912280701754, 0.10964912280701754, 0.10964912280701754, 0.10964912280701754, 0.10964912280701754, 0.10964912280701754, 0.10964912280701754, 0.10964912280701754, 0.10964912280701754, 0.10964912280701754, 0.10964912280701754, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11842105263157894, 0.11842105263157894, 0.9429824561403509, 0.11842105263157894, 0.16228070175438597, 0.6359649122807017, 0.19736842105263158, 0.15789473684210525, 0.9342105263157895, 0.9473684210526315, 0.9429824561403509, 0.9078947368421053, 0.16666666666666666, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.12719298245614036, 0.12719298245614036, 0.12280701754385964, 0.12280701754385964, 0.13157894736842105, 0.13157894736842105, 0.22807017543859648, 0.23684210526315788, 0.9473684210526315, 0.2412280701754386, 0.23684210526315788, 0.22807017543859648, 0.2236842105263158, 0.21052631578947367, 0.21052631578947367, 0.21052631578947367, 0.21052631578947367, 0.21052631578947367, 0.15789473684210525, 0.16228070175438597, 0.16228070175438597, 0.16228070175438597, 0.17105263157894737, 0.17105263157894737, 0.18421052631578946, 0.18859649122807018, 0.19736842105263158, 0.2149122807017544, 0.23684210526315788, 0.2324561403508772, 0.2675438596491228, 0.2719298245614035, 0.2631578947368421, 0.2675438596491228, 0.2675438596491228, 0.2675438596491228, 0.2719298245614035, 0.2894736842105263, 0.2982456140350877, 0.2982456140350877, 0.2982456140350877, 0.30701754385964913, 0.3201754385964912, 0.35526315789473684, 0.39035087719298245, 0.4692982456140351, 0.5789473684210527], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KdpC.gap.json b/pfam_gap_rates/KdpC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3c8e809749870ad1c4c966f1044a743a875b12c0
--- /dev/null
+++ b/pfam_gap_rates/KdpC.gap.json
@@ -0,0 +1 @@
+{"family": "KdpC", "n_seqs": 593, "length": 212, "gap_rates": [0.44013490725126475, 0.17706576728499157, 0.10623946037099494, 0.09106239460370995, 0.08431703204047218, 0.07588532883642496, 0.07251264755480608, 0.07251264755480608, 0.07082630691399663, 0.06745362563237774, 0.0657672849915683, 0.0657672849915683, 0.06239460370994941, 0.06239460370994941, 0.06239460370994941, 0.06070826306913996, 0.06070826306913996, 0.05902192242833052, 0.05902192242833052, 0.05902192242833052, 0.05902192242833052, 0.05902192242833052, 0.05902192242833052, 0.05902192242833052, 0.05902192242833052, 0.05902192242833052, 0.05902192242833052, 0.05902192242833052, 0.0893760539629005, 0.12141652613827993, 0.05902192242833052, 0.05902192242833052, 0.06070826306913996, 0.06070826306913996, 0.06070826306913996, 0.06070826306913996, 0.06070826306913996, 0.06070826306913996, 0.06070826306913996, 0.06070826306913996, 0.8381112984822934, 0.07419898819561552, 0.06913996627318718, 0.9089376053962901, 0.06745362563237774, 0.07082630691399663, 0.06913996627318718, 0.06239460370994941, 0.08263069139966273, 0.05733558178752108, 0.05733558178752108, 0.05733558178752108, 0.05733558178752108, 0.05733558178752108, 0.05733558178752108, 0.05733558178752108, 0.05733558178752108, 0.05733558178752108, 0.8617200674536256, 0.8684654300168634, 0.9106239460370995, 0.8718381112984823, 0.863406408094435, 0.8617200674536256, 0.05902192242833052, 0.05733558178752108, 0.05733558178752108, 0.05733558178752108, 0.05564924114671164, 0.05564924114671164, 0.05564924114671164, 0.05902192242833052, 0.06070826306913996, 0.06239460370994941, 0.06745362563237774, 0.07251264755480608, 0.07251264755480608, 0.5025295109612141, 0.8836424957841484, 0.8903878583473862, 0.9139966273187183, 0.9443507588532883, 0.9089376053962901, 0.8887015177065767, 0.6627318718381113, 0.5025295109612141, 0.1045531197301855, 0.10961214165261383, 0.8431703204047217, 0.8448566610455311, 0.851602023608769, 0.8903878583473862, 0.9139966273187183, 0.9190556492411467, 0.9190556492411467, 0.9173693086003373, 0.8920741989881956, 0.8650927487352446, 0.8448566610455311, 0.8431703204047217, 0.8397976391231029, 0.09780775716694773, 0.09612141652613827, 0.09274873524451939, 0.0893760539629005, 0.08263069139966273, 0.07588532883642496, 0.07588532883642496, 0.06408094435075885, 0.06408094435075885, 0.06239460370994941, 0.06070826306913996, 0.06070826306913996, 0.06408094435075885, 0.08600337268128162, 0.08431703204047218, 0.08600337268128162, 0.08768971332209106, 0.08768971332209106, 0.08768971332209106, 0.0893760539629005, 0.0893760539629005, 0.0893760539629005, 0.0893760539629005, 0.09106239460370995, 0.09106239460370995, 0.0893760539629005, 0.08768971332209106, 0.08768971332209106, 0.17200674536256325, 0.15682967959527824, 0.1551433389544688, 0.163575042158516, 0.16020236087689713, 0.20236087689713322, 0.44350758853288363, 0.2765598650927487, 0.20741989881956155, 0.9477234401349073, 0.06745362563237774, 0.06070826306913996, 0.09612141652613827, 0.06408094435075885, 0.06070826306913996, 0.06239460370994941, 0.06239460370994941, 0.06239460370994941, 0.05902192242833052, 0.05396290050590219, 0.05396290050590219, 0.05227655986509275, 0.05227655986509275, 0.05227655986509275, 0.05227655986509275, 0.05227655986509275, 0.05227655986509275, 0.05227655986509275, 0.05227655986509275, 0.05227655986509275, 0.05396290050590219, 0.05396290050590219, 0.05396290050590219, 0.05396290050590219, 0.05227655986509275, 0.05227655986509275, 0.05227655986509275, 0.050590219224283306, 0.050590219224283306, 0.050590219224283306, 0.050590219224283306, 0.050590219224283306, 0.048903878583473864, 0.048903878583473864, 0.048903878583473864, 0.048903878583473864, 0.048903878583473864, 0.048903878583473864, 0.048903878583473864, 0.048903878583473864, 0.048903878583473864, 0.048903878583473864, 0.048903878583473864, 0.048903878583473864, 0.050590219224283306, 0.05227655986509275, 0.05227655986509275, 0.05396290050590219, 0.05227655986509275, 0.05564924114671164, 0.05902192242833052, 0.06913996627318718, 0.07251264755480608, 0.07925801011804384, 0.09106239460370995, 0.08768971332209106, 0.07925801011804384, 0.06745362563237774, 0.06070826306913996, 0.05396290050590219, 0.05396290050590219, 0.05396290050590219, 0.05396290050590219, 0.05396290050590219, 0.05396290050590219, 0.05396290050590219, 0.05396290050590219, 0.05564924114671164, 0.05733558178752108, 0.05902192242833052, 0.06745362563237774, 0.22596964586846544, 0.7959527824620574], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Keratin.gap.json b/pfam_gap_rates/Keratin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e4cb5217bd2c59df8d99c73e2da105951a4977f1
--- /dev/null
+++ b/pfam_gap_rates/Keratin.gap.json
@@ -0,0 +1 @@
+{"family": "Keratin", "n_seqs": 170, "length": 102, "gap_rates": [0.5529411764705883, 0.5294117647058824, 0.4294117647058823, 0.3764705882352941, 0.21176470588235294, 0.21176470588235294, 0.21176470588235294, 0.9, 0.3176470588235294, 0.27058823529411763, 0.24705882352941178, 0.18235294117647058, 0.17058823529411765, 0.16470588235294117, 0.15294117647058825, 0.15294117647058825, 0.15294117647058825, 0.15294117647058825, 0.15294117647058825, 0.1411764705882353, 0.12941176470588237, 0.11176470588235295, 0.10588235294117647, 0.09411764705882353, 0.047058823529411764, 0.047058823529411764, 0.01764705882352941, 0.011764705882352941, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.0058823529411764705, 0.01764705882352941, 0.01764705882352941, 0.03529411764705882, 0.03529411764705882, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.052941176470588235, 0.052941176470588235, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.06470588235294118, 0.8764705882352941, 0.9, 0.9294117647058824, 0.888235294117647, 0.8529411764705882, 0.08235294117647059, 0.11176470588235295, 0.12941176470588237, 0.13529411764705881, 0.12352941176470589, 0.14705882352941177, 0.17647058823529413, 0.17647058823529413, 0.2, 0.1588235294117647, 0.16470588235294117, 0.18235294117647058, 0.18823529411764706, 0.9470588235294117, 0.8705882352941177, 0.18235294117647058, 0.21764705882352942, 0.2235294117647059, 0.2529411764705882, 0.27647058823529413, 0.3, 0.3352941176470588, 0.35294117647058826, 0.37058823529411766, 0.38823529411764707, 0.4470588235294118, 0.5411764705882353, 0.6411764705882353, 0.8823529411764706], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KfrA_N.gap.json b/pfam_gap_rates/KfrA_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e494b8e97b478d9d88c97f501f8df9bebacd7f4a
--- /dev/null
+++ b/pfam_gap_rates/KfrA_N.gap.json
@@ -0,0 +1 @@
+{"family": "KfrA_N", "n_seqs": 159, "length": 128, "gap_rates": [0.6289308176100629, 0.32075471698113206, 0.20125786163522014, 0.18867924528301888, 0.1509433962264151, 0.11320754716981132, 0.0880503144654088, 0.05660377358490566, 0.050314465408805034, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.03773584905660377, 0.031446540880503145, 0.025157232704402517, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.006289308176100629, 0.006289308176100629, 0.006289308176100629, 0.0, 0.0, 0.0, 0.0, 0.1069182389937107, 0.8364779874213837, 0.006289308176100629, 0.0, 0.012578616352201259, 0.006289308176100629, 0.0, 0.0, 0.0, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.05660377358490566, 0.08176100628930817, 0.16981132075471697, 0.3522012578616352, 0.6037735849056604, 0.8742138364779874, 0.8930817610062893, 0.8679245283018868, 0.5157232704402516, 0.06289308176100629, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.5974842767295597, 0.6163522012578616, 0.5974842767295597, 0.5911949685534591, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.050314465408805034, 0.050314465408805034, 0.05660377358490566, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.05660377358490566, 0.9433962264150944, 0.949685534591195, 0.9433962264150944, 0.9433962264150944, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.9433962264150944, 0.050314465408805034, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.06289308176100629, 0.06289308176100629, 0.07547169811320754, 0.07547169811320754, 0.08176100628930817, 0.0880503144654088, 0.0880503144654088, 0.10062893081761007, 0.1069182389937107, 0.13836477987421383, 0.16352201257861634, 0.20754716981132076, 0.2578616352201258, 0.3522012578616352, 0.4968553459119497, 0.89937106918239], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LEA_1.gap.json b/pfam_gap_rates/LEA_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a0db5a7038b4976b63f2bd28c0e43f7eac501b47
--- /dev/null
+++ b/pfam_gap_rates/LEA_1.gap.json
@@ -0,0 +1 @@
+{"family": "LEA_1", "n_seqs": 106, "length": 71, "gap_rates": [0.3018867924528302, 0.1509433962264151, 0.07547169811320754, 0.0660377358490566, 0.07547169811320754, 0.07547169811320754, 0.05660377358490566, 0.05660377358490566, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.05660377358490566, 0.05660377358490566, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.03773584905660377, 0.03773584905660377, 0.14150943396226415, 0.14150943396226415, 0.1320754716981132, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.1320754716981132, 0.12264150943396226, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.018867924528301886, 0.018867924528301886, 0.02830188679245283, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.05660377358490566, 0.08490566037735849, 0.14150943396226415, 0.6698113207547169], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LEA_4.gap.json b/pfam_gap_rates/LEA_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d72dfb8c4920f49ffe6a846d48f0e6c4db062396
--- /dev/null
+++ b/pfam_gap_rates/LEA_4.gap.json
@@ -0,0 +1 @@
+{"family": "LEA_4", "n_seqs": 234, "length": 44, "gap_rates": [0.47435897435897434, 0.3076923076923077, 0.23076923076923078, 0.14957264957264957, 0.10256410256410256, 0.07692307692307693, 0.07264957264957266, 0.05982905982905983, 0.04700854700854701, 0.04700854700854701, 0.04700854700854701, 0.04700854700854701, 0.05128205128205128, 0.038461538461538464, 0.01282051282051282, 0.004273504273504274, 0.0, 0.0, 0.0, 0.0, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.0, 0.0, 0.0, 0.004273504273504274, 0.01282051282051282, 0.02564102564102564, 0.029914529914529916, 0.038461538461538464, 0.05982905982905983, 0.0811965811965812, 0.1111111111111111, 0.19658119658119658, 0.2264957264957265, 0.27350427350427353, 0.3504273504273504, 0.5854700854700855], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ldh_2.gap.json b/pfam_gap_rates/Ldh_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..809d35e4d3acf1a9bbd7fff0a5816af4661bb1c1
--- /dev/null
+++ b/pfam_gap_rates/Ldh_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ldl_recept_b.gap.json b/pfam_gap_rates/Ldl_recept_b.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..67d9d4cb9bfb66b0d65fb49f5df3d4e51bbb6186
--- /dev/null
+++ b/pfam_gap_rates/Ldl_recept_b.gap.json
@@ -0,0 +1 @@
+{"family": "Ldl_recept_b", "n_seqs": 3913, "length": 46, "gap_rates": [0.337337081523128, 0.10810120112445694, 0.014566828520316892, 0.01073345259391771, 0.005622284692052134, 0.004600051111679018, 0.004855609506772297, 0.005111167901865576, 0.004855609506772297, 0.005111167901865576, 0.005877843087145413, 0.8742652696141068, 0.5931510350115001, 0.003066700741119346, 0.0007666751852798365, 0.0007666751852798365, 0.0005111167901865576, 0.0002555583950932788, 0.0002555583950932788, 0.0002555583950932788, 0.0002555583950932788, 0.0002555583950932788, 0.0005111167901865576, 0.0007666751852798365, 0.9432660362892921, 0.0700230002555584, 0.004088934321492461, 0.0035778175313059034, 0.004088934321492461, 0.006644518272425249, 0.010222335803731152, 0.016100178890876567, 0.023511372348581652, 0.9235880398671097, 0.8640429338103757, 0.02402248913876821, 0.027344748274980832, 0.03220035778175313, 0.03322259136212625, 0.03424482494249936, 0.03628929210324559, 0.03935599284436494, 0.051111679018655765, 0.0748786097623307, 0.14183490927676976, 0.41170457449527215], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lipoprotein_16.gap.json b/pfam_gap_rates/Lipoprotein_16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c50dc4d4b5828d723ae35391e9c5bd43f24aad99
--- /dev/null
+++ b/pfam_gap_rates/Lipoprotein_16.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Lycopene_cycl.gap.json b/pfam_gap_rates/Lycopene_cycl.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e58b28f245e19ce47ec75efb7e26833485a44b51
--- /dev/null
+++ b/pfam_gap_rates/Lycopene_cycl.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Lys.gap.json b/pfam_gap_rates/Lys.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..79fa7fd1e68a55621ab01bcfad9423995e07c14f
--- /dev/null
+++ b/pfam_gap_rates/Lys.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/MACPF.gap.json b/pfam_gap_rates/MACPF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f60317854407a837033ef8f8b6de1345379bd6d
--- /dev/null
+++ b/pfam_gap_rates/MACPF.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MCRS_N.gap.json b/pfam_gap_rates/MCRS_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..69ace32973290c9f5f55563c2c77c061fcd2131c
--- /dev/null
+++ b/pfam_gap_rates/MCRS_N.gap.json
@@ -0,0 +1 @@
+{"family": "MCRS_N", "n_seqs": 139, "length": 206, "gap_rates": [0.4748201438848921, 0.1510791366906475, 0.1510791366906475, 0.1510791366906475, 0.1510791366906475, 0.14388489208633093, 0.14388489208633093, 0.14388489208633093, 0.14388489208633093, 0.14388489208633093, 0.14388489208633093, 0.14388489208633093, 0.14388489208633093, 0.1510791366906475, 0.14388489208633093, 0.1366906474820144, 0.12949640287769784, 0.12949640287769784, 0.12949640287769784, 0.1223021582733813, 0.1223021582733813, 0.1223021582733813, 0.11510791366906475, 0.10071942446043165, 0.09352517985611511, 0.09352517985611511, 0.7913669064748201, 0.09352517985611511, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07913669064748201, 0.07194244604316546, 0.06474820143884892, 0.07194244604316546, 0.07913669064748201, 0.05755395683453238, 0.06474820143884892, 0.07194244604316546, 0.08633093525179857, 0.08633093525179857, 0.1366906474820144, 0.17985611510791366, 0.22302158273381295, 0.23741007194244604, 0.23741007194244604, 0.2733812949640288, 0.302158273381295, 0.302158273381295, 0.302158273381295, 0.302158273381295, 0.302158273381295, 0.302158273381295, 0.2949640287769784, 0.2949640287769784, 0.2949640287769784, 0.2949640287769784, 0.302158273381295, 0.302158273381295, 0.30935251798561153, 0.30935251798561153, 0.31654676258992803, 0.31654676258992803, 0.31654676258992803, 0.33093525179856115, 0.33093525179856115, 0.3237410071942446, 0.34532374100719426, 0.8992805755395683, 0.935251798561151, 0.9424460431654677, 0.9280575539568345, 0.8561151079136691, 0.35251798561151076, 0.35251798561151076, 0.33093525179856115, 0.33093525179856115, 0.3381294964028777, 0.3237410071942446, 0.3237410071942446, 0.3237410071942446, 0.3237410071942446, 0.3237410071942446, 0.3237410071942446, 0.3237410071942446, 0.3237410071942446, 0.3237410071942446, 0.3237410071942446, 0.3237410071942446, 0.33093525179856115, 0.33093525179856115, 0.33093525179856115, 0.33093525179856115, 0.33093525179856115, 0.3381294964028777, 0.3381294964028777, 0.3381294964028777, 0.3381294964028777, 0.3381294964028777, 0.3381294964028777, 0.3381294964028777, 0.3381294964028777, 0.3381294964028777, 0.3381294964028777, 0.3381294964028777, 0.3381294964028777, 0.34532374100719426, 0.34532374100719426, 0.3597122302158273, 0.37410071942446044, 0.37410071942446044, 0.381294964028777, 0.381294964028777, 0.3669064748201439, 0.37410071942446044, 0.37410071942446044, 0.37410071942446044, 0.37410071942446044, 0.38848920863309355, 0.38848920863309355, 0.4172661870503597, 0.4316546762589928, 0.45323741007194246, 0.4676258992805755, 0.4748201438848921, 0.4676258992805755, 0.4460431654676259, 0.4748201438848921, 0.7841726618705036, 0.45323741007194246, 0.4460431654676259, 0.43884892086330934, 0.43884892086330934, 0.4460431654676259, 0.45323741007194246, 0.460431654676259, 0.460431654676259, 0.460431654676259, 0.460431654676259, 0.4676258992805755, 0.4676258992805755, 0.48201438848920863, 0.48201438848920863, 0.9496402877697842, 0.5179856115107914, 0.5179856115107914, 0.5251798561151079, 0.539568345323741, 0.539568345323741, 0.5323741007194245, 0.5539568345323741, 0.5539568345323741, 0.5467625899280576, 0.5539568345323741, 0.5467625899280576, 0.5467625899280576, 0.5539568345323741, 0.5539568345323741, 0.5539568345323741, 0.5539568345323741, 0.5539568345323741, 0.5683453237410072, 0.5755395683453237, 0.5827338129496403, 0.5827338129496403, 0.5827338129496403, 0.60431654676259, 0.60431654676259, 0.60431654676259, 0.60431654676259, 0.60431654676259, 0.60431654676259, 0.60431654676259, 0.60431654676259, 0.6115107913669064, 0.6115107913669064, 0.6187050359712231, 0.6187050359712231, 0.6187050359712231, 0.6187050359712231, 0.6187050359712231, 0.6402877697841727, 0.6834532374100719], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MOFRL.gap.json b/pfam_gap_rates/MOFRL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..554a17e78a923fe795b1751369abf6089910181d
--- /dev/null
+++ b/pfam_gap_rates/MOFRL.gap.json
@@ -0,0 +1 @@
+{"family": "MOFRL", "n_seqs": 654, "length": 122, "gap_rates": [0.536697247706422, 0.10856269113149847, 0.035168195718654434, 0.022935779816513763, 0.021406727828746176, 0.019877675840978593, 0.019877675840978593, 0.019877675840978593, 0.019877675840978593, 0.019877675840978593, 0.019877675840978593, 0.019877675840978593, 0.019877675840978593, 0.024464831804281346, 0.02599388379204893, 0.019877675840978593, 0.863914373088685, 0.9342507645259939, 0.8899082568807339, 0.7048929663608563, 0.019877675840978593, 0.01834862385321101, 0.016819571865443424, 0.01529051987767584, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.39908256880733944, 0.40061162079510704, 0.41743119266055045, 0.15749235474006115, 0.21559633027522937, 0.42660550458715596, 0.8761467889908257, 0.9128440366972477, 0.9434250764525994, 0.9342507645259939, 0.8899082568807339, 0.8287461773700305, 0.3256880733944954, 0.1834862385321101, 0.04128440366972477, 0.019877675840978593, 0.01834862385321101, 0.016819571865443424, 0.016819571865443424, 0.016819571865443424, 0.016819571865443424, 0.016819571865443424, 0.01529051987767584, 0.01529051987767584, 0.01529051987767584, 0.01529051987767584, 0.01529051987767584, 0.01529051987767584, 0.06269113149847094, 0.04434250764525994, 0.016819571865443424, 0.01529051987767584, 0.01529051987767584, 0.01529051987767584, 0.01529051987767584, 0.01529051987767584, 0.01529051987767584, 0.01529051987767584, 0.01529051987767584, 0.01529051987767584, 0.01529051987767584, 0.016819571865443424, 0.016819571865443424, 0.019877675840978593, 0.027522935779816515, 0.0290519877675841, 0.04434250764525994, 0.05963302752293578, 0.11467889908256881, 0.11009174311926606, 0.05504587155963303, 0.04434250764525994, 0.027522935779816515, 0.01834862385321101, 0.01834862385321101, 0.016819571865443424, 0.016819571865443424, 0.016819571865443424, 0.016819571865443424, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.021406727828746176, 0.021406727828746176, 0.8807339449541285, 0.8868501529051988, 0.8730886850152905, 0.022935779816513763, 0.022935779816513763, 0.022935779816513763, 0.024464831804281346, 0.02599388379204893, 0.0290519877675841, 0.0290519877675841, 0.0290519877675841, 0.03211009174311927, 0.03211009174311927, 0.03363914373088685, 0.03363914373088685, 0.04892966360856269], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MOR2-PAG1_C.gap.json b/pfam_gap_rates/MOR2-PAG1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0c08fd762b3c364b201bbfd906d564ed20221116
--- /dev/null
+++ b/pfam_gap_rates/MOR2-PAG1_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MRP-S28.gap.json b/pfam_gap_rates/MRP-S28.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..84b6be2e6e67d316fffabfd2ea3e1f4a1c98ffc8
--- /dev/null
+++ b/pfam_gap_rates/MRP-S28.gap.json
@@ -0,0 +1 @@
+{"family": "MRP-S28", "n_seqs": 287, "length": 170, "gap_rates": [0.6202090592334495, 0.5644599303135889, 0.5679442508710801, 0.5714285714285714, 0.5609756097560976, 0.5644599303135889, 0.5226480836236934, 0.9128919860627178, 0.47038327526132406, 0.4146341463414634, 0.32752613240418116, 0.3240418118466899, 0.31010452961672474, 0.29965156794425085, 0.2926829268292683, 0.27526132404181186, 0.27526132404181186, 0.27177700348432055, 0.2578397212543554, 0.23344947735191637, 0.21602787456445993, 0.1986062717770035, 0.07317073170731707, 0.662020905923345, 0.7073170731707317, 0.6829268292682927, 0.6132404181184669, 0.03484320557491289, 0.027874564459930314, 0.024390243902439025, 0.020905923344947737, 0.020905923344947737, 0.020905923344947737, 0.024390243902439025, 0.024390243902439025, 0.020905923344947737, 0.017421602787456445, 0.017421602787456445, 0.017421602787456445, 0.013937282229965157, 0.013937282229965157, 0.013937282229965157, 0.013937282229965157, 0.9024390243902439, 0.9094076655052264, 0.8048780487804879, 0.010452961672473868, 0.010452961672473868, 0.867595818815331, 0.010452961672473868, 0.010452961672473868, 0.010452961672473868, 0.010452961672473868, 0.010452961672473868, 0.006968641114982578, 0.006968641114982578, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.013937282229965157, 0.013937282229965157, 0.89198606271777, 0.9372822299651568, 0.9372822299651568, 0.9442508710801394, 0.9407665505226481, 0.9372822299651568, 0.9372822299651568, 0.89198606271777, 0.010452961672473868, 0.013937282229965157, 0.8989547038327527, 0.9024390243902439, 0.9163763066202091, 0.9233449477351916, 0.926829268292683, 0.9303135888501742, 0.9477351916376306, 0.9303135888501742, 0.926829268292683, 0.9163763066202091, 0.9059233449477352, 0.8989547038327527, 0.8989547038327527, 0.010452961672473868, 0.006968641114982578, 0.006968641114982578, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.006968641114982578, 0.013937282229965157, 0.020905923344947737, 0.020905923344947737, 0.020905923344947737, 0.020905923344947737, 0.020905923344947737, 0.020905923344947737, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.027874564459930314, 0.027874564459930314, 0.027874564459930314, 0.027874564459930314, 0.0313588850174216, 0.03484320557491289, 0.03832752613240418, 0.03832752613240418, 0.03832752613240418, 0.03832752613240418, 0.03832752613240418, 0.03832752613240418, 0.04878048780487805, 0.05574912891986063, 0.41114982578397213, 0.8954703832752613, 0.15331010452961671, 0.16376306620209058, 0.18118466898954705, 0.18466898954703834, 0.20905923344947736, 0.24041811846689895, 0.2787456445993031, 0.3344947735191638, 0.34843205574912894, 0.3519163763066202, 0.3519163763066202, 0.36585365853658536, 0.36585365853658536, 0.37282229965156793, 0.37282229965156793, 0.37630662020905925, 0.3797909407665505, 0.6202090592334495, 0.6480836236933798, 0.6794425087108014, 0.7177700348432056, 0.7456445993031359, 0.8641114982578397, 0.8815331010452961, 0.9024390243902439, 0.9094076655052264, 0.9233449477351916, 0.9477351916376306, 0.9233449477351916, 0.9198606271777003, 0.9024390243902439, 0.8885017421602788, 0.867595818815331, 0.8501742160278746, 0.7700348432055749, 0.5818815331010453, 0.5714285714285714, 0.5400696864111498, 0.5296167247386759, 0.5261324041811847, 0.5331010452961672, 0.5331010452961672, 0.5296167247386759, 0.5296167247386759, 0.9024390243902439], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MRP-S34.gap.json b/pfam_gap_rates/MRP-S34.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..71769f09a5d88cdae97983df309dfb1d46d6eead
--- /dev/null
+++ b/pfam_gap_rates/MRP-S34.gap.json
@@ -0,0 +1 @@
+{"family": "MRP-S34", "n_seqs": 186, "length": 139, "gap_rates": [0.3763440860215054, 0.26881720430107525, 0.12365591397849462, 0.10215053763440861, 0.0913978494623656, 0.08602150537634409, 0.08602150537634409, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.07526881720430108, 0.06989247311827956, 0.06989247311827956, 0.06989247311827956, 0.08064516129032258, 0.06451612903225806, 0.06451612903225806, 0.05913978494623656, 0.053763440860215055, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.23655913978494625, 0.8225806451612904, 0.3870967741935484, 0.3064516129032258, 0.2903225806451613, 0.25268817204301075, 0.053763440860215055, 0.053763440860215055, 0.04838709677419355, 0.08602150537634409, 0.15053763440860216, 0.043010752688172046, 0.043010752688172046, 0.043010752688172046, 0.043010752688172046, 0.043010752688172046, 0.04838709677419355, 0.053763440860215055, 0.05913978494623656, 0.05913978494623656, 0.05913978494623656, 0.5376344086021505, 0.5268817204301075, 0.6559139784946236, 0.8978494623655914, 0.9193548387096774, 0.8763440860215054, 0.07526881720430108, 0.026881720430107527, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.03225806451612903, 0.03763440860215054, 0.03763440860215054, 0.043010752688172046, 0.043010752688172046, 0.043010752688172046, 0.7204301075268817, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.053763440860215055, 0.05913978494623656, 0.053763440860215055, 0.12365591397849462, 0.8387096774193549, 0.053763440860215055, 0.06451612903225806, 0.05913978494623656, 0.053763440860215055, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.0913978494623656, 0.16666666666666666, 0.20430107526881722, 0.22043010752688172, 0.25268817204301075, 0.3548387096774194, 0.3655913978494624, 0.4032258064516129, 0.43010752688172044, 0.44623655913978494, 0.45698924731182794, 0.46236559139784944, 0.46236559139784944, 0.5913978494623656, 0.5053763440860215, 0.946236559139785, 0.5161290322580645, 0.532258064516129, 0.521505376344086, 0.6236559139784946, 0.5752688172043011, 0.5967741935483871, 0.5376344086021505, 0.8387096774193549, 0.9354838709677419, 0.9247311827956989, 0.7688172043010753, 0.532258064516129, 0.532258064516129, 0.532258064516129, 0.532258064516129, 0.532258064516129, 0.532258064516129, 0.532258064516129, 0.532258064516129, 0.532258064516129, 0.532258064516129, 0.543010752688172, 0.5483870967741935, 0.543010752688172, 0.543010752688172, 0.5483870967741935, 0.5483870967741935, 0.553763440860215, 0.5806451612903226, 0.5860215053763441, 0.5860215053763441, 0.6021505376344086, 0.6075268817204301, 0.6344086021505376, 0.6720430107526881, 0.6989247311827957, 0.8118279569892473, 0.8709677419354839], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Med5.gap.json b/pfam_gap_rates/Med5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24555878306b69aa52e2ca21ada0d5d00ce39797
--- /dev/null
+++ b/pfam_gap_rates/Med5.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/Menin.gap.json b/pfam_gap_rates/Menin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..08d3817d03744128b7e84eb41b4c177736590bbc
--- /dev/null
+++ b/pfam_gap_rates/Menin.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/Meth_synt_1.gap.json b/pfam_gap_rates/Meth_synt_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a13c0020bcc1053af06d6153de0836b7894c5a77
--- /dev/null
+++ b/pfam_gap_rates/Meth_synt_1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_4.gap.json b/pfam_gap_rates/Methyltransf_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3125bbfe7b21b3af62d485dcc81f30500f30f459
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_4.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MgsA_C.gap.json b/pfam_gap_rates/MgsA_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1309d8397789d20e5f69b267fabe205eb10ef1be
--- /dev/null
+++ b/pfam_gap_rates/MgsA_C.gap.json
@@ -0,0 +1 @@
+{"family": "MgsA_C", "n_seqs": 2350, "length": 171, "gap_rates": [0.1251063829787234, 0.05361702127659575, 0.04638297872340426, 0.03404255319148936, 0.03276595744680851, 0.03234042553191489, 0.03148936170212766, 0.03148936170212766, 0.03148936170212766, 0.03148936170212766, 0.03148936170212766, 0.031063829787234043, 0.031063829787234043, 0.028085106382978724, 0.027659574468085105, 0.027659574468085105, 0.026808510638297874, 0.027659574468085105, 0.16808510638297872, 0.026382978723404255, 0.02425531914893617, 0.0225531914893617, 0.01872340425531915, 0.01574468085106383, 0.014893617021276596, 0.01446808510638298, 0.01446808510638298, 0.014042553191489362, 0.01446808510638298, 0.01446808510638298, 0.01446808510638298, 0.01446808510638298, 0.014042553191489362, 0.014893617021276596, 0.01446808510638298, 0.01446808510638298, 0.020851063829787235, 0.02170212765957447, 0.016595744680851062, 0.015319148936170212, 0.016170212765957447, 0.016170212765957447, 0.016170212765957447, 0.016595744680851062, 0.01702127659574468, 0.016170212765957447, 0.01574468085106383, 0.016170212765957447, 0.016170212765957447, 0.01574468085106383, 0.016170212765957447, 0.016170212765957447, 0.016170212765957447, 0.016170212765957447, 0.01702127659574468, 0.017446808510638297, 0.017872340425531916, 0.01829787234042553, 0.017872340425531916, 0.017872340425531916, 0.017872340425531916, 0.017446808510638297, 0.017446808510638297, 0.01702127659574468, 0.01702127659574468, 0.017872340425531916, 0.017446808510638297, 0.017446808510638297, 0.017872340425531916, 0.017446808510638297, 0.01702127659574468, 0.01702127659574468, 0.01574468085106383, 0.016170212765957447, 0.01574468085106383, 0.01574468085106383, 0.015319148936170212, 0.015319148936170212, 0.01574468085106383, 0.01574468085106383, 0.015319148936170212, 0.01574468085106383, 0.04085106382978723, 0.016170212765957447, 0.015319148936170212, 0.014893617021276596, 0.01446808510638298, 0.01446808510638298, 0.014893617021276596, 0.01574468085106383, 0.015319148936170212, 0.015319148936170212, 0.01574468085106383, 0.017446808510638297, 0.016595744680851062, 0.02297872340425532, 0.02468085106382979, 0.9476595744680851, 0.9459574468085107, 0.033191489361702124, 0.01872340425531915, 0.017872340425531916, 0.01702127659574468, 0.017446808510638297, 0.01702127659574468, 0.017446808510638297, 0.01702127659574468, 0.017446808510638297, 0.020425531914893616, 0.02595744680851064, 0.0574468085106383, 0.06382978723404255, 0.06425531914893617, 0.06936170212765957, 0.09361702127659574, 0.07957446808510639, 0.08042553191489361, 0.07446808510638298, 0.07063829787234042, 0.06, 0.06595744680851064, 0.04382978723404255, 0.04042553191489362, 0.033191489361702124, 0.03531914893617021, 0.05531914893617021, 0.062127659574468086, 0.06382978723404255, 0.06595744680851064, 0.06893617021276596, 0.14851063829787234, 0.0851063829787234, 0.06893617021276596, 0.06893617021276596, 0.06170212765957447, 0.8753191489361702, 0.05319148936170213, 0.04808510638297872, 0.04680851063829787, 0.04680851063829787, 0.04808510638297872, 0.04808510638297872, 0.04808510638297872, 0.06978723404255319, 0.07063829787234042, 0.08340425531914894, 0.0748936170212766, 0.08978723404255319, 0.07021276595744681, 0.06382978723404255, 0.0825531914893617, 0.1025531914893617, 0.11957446808510638, 0.9408510638297872, 0.1425531914893617, 0.15829787234042553, 0.1702127659574468, 0.1804255319148936, 0.18851063829787235, 0.19191489361702127, 0.20297872340425532, 0.21404255319148935, 0.22085106382978723, 0.22425531914893618, 0.2302127659574468, 0.23617021276595745, 0.24170212765957447, 0.2680851063829787, 0.32340425531914896, 0.43106382978723407, 0.9055319148936171], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mit_ribos_Mrp51.gap.json b/pfam_gap_rates/Mit_ribos_Mrp51.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f8a5e6038bd4b4262bd20e57ff1f2bb34d9e4682
--- /dev/null
+++ b/pfam_gap_rates/Mit_ribos_Mrp51.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mito_carr.gap.json b/pfam_gap_rates/Mito_carr.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b4ef943444cae269721a4786c0886103b8bd6f68
--- /dev/null
+++ b/pfam_gap_rates/Mito_carr.gap.json
@@ -0,0 +1 @@
+{"family": "Mito_carr", "n_seqs": 5000, "length": 112, "gap_rates": [0.9056, 0.708, 0.5188, 0.3896, 0.2864, 0.2146, 0.1546, 0.1044, 0.0798, 0.0712, 0.068, 0.0638, 0.0582, 0.055, 0.0526, 0.0484, 0.0476, 0.0514, 0.046, 0.0406, 0.038, 0.037, 0.036, 0.0356, 0.0342, 0.0334, 0.033, 0.0324, 0.0326, 0.0312, 0.0302, 0.0294, 0.029, 0.0292, 0.9484, 0.9498, 0.9486, 0.947, 0.0294, 0.059, 0.0608, 0.062, 0.0706, 0.0962, 0.1448, 0.3354, 0.388, 0.4676, 0.481, 0.4234, 0.7392, 0.8248, 0.8814, 0.9082, 0.9252, 0.9426, 0.9466, 0.9364, 0.9176, 0.897, 0.8612, 0.7906, 0.6942, 0.077, 0.0592, 0.0518, 0.0408, 0.0344, 0.0334, 0.0312, 0.0306, 0.0284, 0.0308, 0.0288, 0.0246, 0.024, 0.0258, 0.03, 0.0244, 0.023, 0.0228, 0.0238, 0.025, 0.0262, 0.0268, 0.0272, 0.0276, 0.0278, 0.0288, 0.03, 0.0306, 0.032, 0.0884, 0.0374, 0.0426, 0.0422, 0.0458, 0.0506, 0.0502, 0.0544, 0.0566, 0.059, 0.0658, 0.0708, 0.0782, 0.0954, 0.125, 0.1726, 0.2502, 0.4548, 0.6988, 0.9098], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MnmE_helical.gap.json b/pfam_gap_rates/MnmE_helical.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d98d12b0aede84019383b95dca0310c30f40825
--- /dev/null
+++ b/pfam_gap_rates/MnmE_helical.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mob1_phocein.gap.json b/pfam_gap_rates/Mob1_phocein.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3ce007a5e69f2bf6d7a72c3a50c834fe6927ca1a
--- /dev/null
+++ b/pfam_gap_rates/Mob1_phocein.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MscS_TM.gap.json b/pfam_gap_rates/MscS_TM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed1699e35eb8d1644d0a4d02f980e5f0830ff86d
--- /dev/null
+++ b/pfam_gap_rates/MscS_TM.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mucin-like.gap.json b/pfam_gap_rates/Mucin-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b37050aa697a7de37f58a64697116a756444138c
--- /dev/null
+++ b/pfam_gap_rates/Mucin-like.gap.json
@@ -0,0 +1 @@
+{"family": "Mucin-like", "n_seqs": 297, "length": 103, "gap_rates": [0.9259259259259259, 0.7373737373737373, 0.6464646464646465, 0.5589225589225589, 0.4983164983164983, 0.4478114478114478, 0.41414141414141414, 0.37037037037037035, 0.31313131313131315, 0.2558922558922559, 0.2255892255892256, 0.14814814814814814, 0.09427609427609428, 0.08080808080808081, 0.06397306397306397, 0.06060606060606061, 0.05387205387205387, 0.04713804713804714, 0.04377104377104377, 0.05723905723905724, 0.04377104377104377, 0.04040404040404041, 0.9326599326599326, 0.026936026936026935, 0.020202020202020204, 0.02356902356902357, 0.016835016835016835, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.003367003367003367, 0.1111111111111111, 0.04377104377104377, 0.02356902356902357, 0.020202020202020204, 0.006734006734006734, 0.006734006734006734, 0.006734006734006734, 0.006734006734006734, 0.006734006734006734, 0.016835016835016835, 0.020202020202020204, 0.026936026936026935, 0.02356902356902357, 0.010101010101010102, 0.006734006734006734, 0.003367003367003367, 0.003367003367003367, 0.003367003367003367, 0.030303030303030304, 0.02356902356902357, 0.020202020202020204, 0.016835016835016835, 0.010101010101010102, 0.0, 0.010101010101010102, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006734006734006734, 0.006734006734006734, 0.06397306397306397, 0.02356902356902357, 0.9494949494949495, 0.9259259259259259, 0.026936026936026935, 0.020202020202020204, 0.020202020202020204, 0.020202020202020204, 0.02356902356902357, 0.026936026936026935, 0.037037037037037035, 0.11447811447811448, 0.07407407407407407, 0.07407407407407407, 0.07744107744107744, 0.07407407407407407, 0.07407407407407407, 0.08080808080808081, 0.09090909090909091, 0.10101010101010101, 0.11447811447811448, 0.1111111111111111, 0.12457912457912458, 0.1447811447811448, 0.15824915824915825, 0.16161616161616163, 0.1717171717171717, 0.1717171717171717, 0.1750841750841751, 0.18518518518518517, 0.18855218855218855, 0.20202020202020202, 0.2356902356902357, 0.28619528619528617, 0.4074074074074074, 0.5016835016835017, 0.6599326599326599, 0.8720538720538721], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MurB_C.gap.json b/pfam_gap_rates/MurB_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a3bcdc9adc484742e6252a8734fb7a84a3bbd8f5
--- /dev/null
+++ b/pfam_gap_rates/MurB_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NARP1.gap.json b/pfam_gap_rates/NARP1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b120cd77cb3c541102705d588020ffb7d95b9732
--- /dev/null
+++ b/pfam_gap_rates/NARP1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NIBRIN_BRCT_II.gap.json b/pfam_gap_rates/NIBRIN_BRCT_II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df3a5762d5d3e9b0a6f6bc8ed9934ea5c995bb60
--- /dev/null
+++ b/pfam_gap_rates/NIBRIN_BRCT_II.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NIF.gap.json b/pfam_gap_rates/NIF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f36e78119fd8ee836427f034903aa129da8efbc9
--- /dev/null
+++ b/pfam_gap_rates/NIF.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NNMT_PNMT_TEMT.gap.json b/pfam_gap_rates/NNMT_PNMT_TEMT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a279d2752f18abb0d8b90e47b949610b9e21bb99
--- /dev/null
+++ b/pfam_gap_rates/NNMT_PNMT_TEMT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NUC194.gap.json b/pfam_gap_rates/NUC194.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9aa097dd197ee1a53c843a2bb0824148a95e2a96
--- /dev/null
+++ b/pfam_gap_rates/NUC194.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NUDIX.gap.json b/pfam_gap_rates/NUDIX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a03b4a123c1cc53f8dc033d199aec24b78f4572e
--- /dev/null
+++ b/pfam_gap_rates/NUDIX.gap.json
@@ -0,0 +1 @@
+{"family": "NUDIX", "n_seqs": 5000, "length": 170, "gap_rates": [0.8208, 0.6714, 0.4982, 0.3706, 0.2814, 0.2364, 0.1958, 0.181, 0.874, 0.1566, 0.1392, 0.1284, 0.117, 0.1072, 0.2558, 0.1578, 0.821, 0.9166, 0.7178, 0.0418, 0.0382, 0.0336, 0.0314, 0.0318, 0.037, 0.0324, 0.7402, 0.929, 0.6382, 0.4474, 0.2768, 0.1192, 0.077, 0.0716, 0.0236, 0.7898, 0.8986, 0.3064, 0.0234, 0.946, 0.0138, 0.9048, 0.0072, 0.0062, 0.0046, 0.0052, 0.0054, 0.0042, 0.0042, 0.0172, 0.0022, 0.0012, 0.8334, 0.0008, 0.0008, 0.0378, 0.0006, 0.0004, 0.0022, 0.0002, 0.0002, 0.0002, 0.0002, 0.0002, 0.0004, 0.0004, 0.0004, 0.0002, 0.926, 0.9164, 0.005, 0.0706, 0.0696, 0.8388, 0.1058, 0.0846, 0.0674, 0.9336, 0.9436, 0.9222, 0.0282, 0.0292, 0.0312, 0.035, 0.3958, 0.373, 0.3936, 0.3638, 0.3236, 0.2826, 0.2258, 0.2236, 0.2044, 0.1836, 0.166, 0.1728, 0.1812, 0.2942, 0.7394, 0.8572, 0.9082, 0.9274, 0.9412, 0.9474, 0.9446, 0.9338, 0.919, 0.8856, 0.8032, 0.6562, 0.1542, 0.1362, 0.1124, 0.103, 0.0942, 0.9456, 0.0868, 0.081, 0.0808, 0.0806, 0.8354, 0.9166, 0.5624, 0.0952, 0.1, 0.0922, 0.0898, 0.0898, 0.0926, 0.1022, 0.1034, 0.114, 0.134, 0.8646, 0.9444, 0.91, 0.7712, 0.422, 0.19, 0.1342, 0.1078, 0.1362, 0.1248, 0.117, 0.1084, 0.1364, 0.1188, 0.1172, 0.1194, 0.1258, 0.1338, 0.145, 0.1532, 0.9154, 0.8276, 0.561, 0.4436, 0.4586, 0.5098, 0.5668, 0.6102, 0.6522, 0.6876, 0.7202, 0.7464, 0.7726, 0.8006, 0.8306, 0.8686, 0.9212], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NYD-SP28_assoc.gap.json b/pfam_gap_rates/NYD-SP28_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..593b26c7afbce58576c2323e6d87d3cf25160e4f
--- /dev/null
+++ b/pfam_gap_rates/NYD-SP28_assoc.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Na_Ala_symp.gap.json b/pfam_gap_rates/Na_Ala_symp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2b3b2e4beaec231be1651c05e8d1f82a6ed835f5
--- /dev/null
+++ b/pfam_gap_rates/Na_Ala_symp.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NhaB.gap.json b/pfam_gap_rates/NhaB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec08b6549c9d49d30b36f0d5a8316b0832361dd2
--- /dev/null
+++ b/pfam_gap_rates/NhaB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Nop25.gap.json b/pfam_gap_rates/Nop25.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..35123fe8f4af5dafc290cff3e5b4fe7f53dd2e96
--- /dev/null
+++ b/pfam_gap_rates/Nop25.gap.json
@@ -0,0 +1 @@
+{"family": "Nop25", "n_seqs": 263, "length": 183, "gap_rates": [0.8022813688212928, 0.46387832699619774, 0.3840304182509506, 0.34980988593155893, 0.25475285171102663, 0.21292775665399238, 0.17110266159695817, 0.13307984790874525, 0.12547528517110265, 0.10266159695817491, 0.07604562737642585, 0.03802281368821293, 0.03802281368821293, 0.03802281368821293, 0.034220532319391636, 0.034220532319391636, 0.034220532319391636, 0.034220532319391636, 0.034220532319391636, 0.019011406844106463, 0.011406844106463879, 0.019011406844106463, 0.015209125475285171, 0.015209125475285171, 0.011406844106463879, 0.0076045627376425855, 0.0076045627376425855, 0.0076045627376425855, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0038022813688212928, 0.0076045627376425855, 0.0038022813688212928, 0.0038022813688212928, 0.049429657794676805, 0.06463878326996197, 0.06844106463878327, 0.06844106463878327, 0.022813688212927757, 0.011406844106463879, 0.015209125475285171, 0.015209125475285171, 0.022813688212927757, 0.060836501901140684, 0.022813688212927757, 0.022813688212927757, 0.026615969581749048, 0.030418250950570342, 0.04182509505703422, 0.045627376425855515, 0.09885931558935361, 0.07984790874524715, 0.12167300380228137, 0.09885931558935361, 0.09505703422053231, 0.10266159695817491, 0.11406844106463879, 0.11026615969581749, 0.10266159695817491, 0.10266159695817491, 0.10646387832699619, 0.11026615969581749, 0.11787072243346007, 0.7680608365019012, 0.8060836501901141, 0.8212927756653993, 0.8555133079847909, 0.8593155893536122, 0.8859315589353612, 0.9201520912547528, 0.9315589353612167, 0.935361216730038, 0.9467680608365019, 0.9429657794676806, 0.935361216730038, 0.9315589353612167, 0.9011406844106464, 0.870722433460076, 0.8593155893536122, 0.8326996197718631, 0.8136882129277566, 0.7718631178707225, 0.7604562737642585, 0.14068441064638784, 0.311787072243346, 0.3041825095057034, 0.2889733840304182, 0.26996197718631176, 0.27756653992395436, 0.29277566539923955, 0.3155893536121673, 0.3231939163498099, 0.5171102661596958, 0.5361216730038023, 0.5475285171102662, 0.5437262357414449, 0.5665399239543726, 0.5285171102661597, 0.8174904942965779, 0.870722433460076, 0.9239543726235742, 0.908745247148289, 0.8479087452471483, 0.7984790874524715, 0.5361216730038023, 0.4866920152091255, 0.41825095057034223, 0.38783269961977185, 0.3574144486692015, 0.33460076045627374, 0.3155893536121673, 0.3193916349809886, 0.311787072243346, 0.3155893536121673, 0.3231939163498099, 0.3269961977186312, 0.33460076045627374, 0.34220532319391633, 0.34980988593155893, 0.34220532319391633, 0.3650190114068441, 0.4714828897338403, 0.5209125475285171, 0.8136882129277566, 0.8821292775665399, 0.9277566539923955, 0.9391634980988594, 0.935361216730038, 0.9201520912547528, 0.8555133079847909, 0.7718631178707225, 0.5019011406844106, 0.49049429657794674, 0.467680608365019, 0.46387832699619774, 0.46387832699619774, 0.4600760456273764, 0.45627376425855515, 0.467680608365019, 0.4828897338403042, 0.4752851711026616, 0.49049429657794674, 0.49809885931558934, 0.5133079847908745, 0.5209125475285171, 0.5057034220532319, 0.9239543726235742, 0.9315589353612167, 0.935361216730038, 0.9391634980988594, 0.9429657794676806, 0.9467680608365019, 0.9429657794676806, 0.9429657794676806, 0.9391634980988594, 0.9315589353612167, 0.9315589353612167, 0.9163498098859315, 0.5247148288973384, 0.5437262357414449, 0.5513307984790875, 0.5627376425855514, 0.5703422053231939, 0.5779467680608364, 0.596958174904943, 0.6197718631178707, 0.6653992395437263, 0.6730038022813688, 0.8631178707224335], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nore1-SARAH.gap.json b/pfam_gap_rates/Nore1-SARAH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b3c9b539ab8a1923c2b5588220c189ca460c4afd
--- /dev/null
+++ b/pfam_gap_rates/Nore1-SARAH.gap.json
@@ -0,0 +1 @@
+{"family": "Nore1-SARAH", "n_seqs": 171, "length": 40, "gap_rates": [0.34502923976608185, 0.04678362573099415, 0.023391812865497075, 0.011695906432748537, 0.011695906432748537, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005847953216374269, 0.005847953216374269, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.05847953216374269, 0.05847953216374269, 0.07017543859649122, 0.07017543859649122, 0.07602339181286549, 0.08187134502923976, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.0935672514619883, 0.1695906432748538, 0.21052631578947367], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nuc-transf.gap.json b/pfam_gap_rates/Nuc-transf.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1908300b3dff440e3f29fe2bb03836bfe5fae038
--- /dev/null
+++ b/pfam_gap_rates/Nuc-transf.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Nuc_H_symport.gap.json b/pfam_gap_rates/Nuc_H_symport.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5014348fe2cdf0a5648df97baf37c16b7080fb43
--- /dev/null
+++ b/pfam_gap_rates/Nuc_H_symport.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/Ocnus.gap.json b/pfam_gap_rates/Ocnus.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c99459b4a7cd1b933a84f8a14eb465705ac1d54f
--- /dev/null
+++ b/pfam_gap_rates/Ocnus.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/OprD.gap.json b/pfam_gap_rates/OprD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9a21c5111ced6becaccda5c4ceca228072fa8f34
--- /dev/null
+++ b/pfam_gap_rates/OprD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Oxidored_FMN.gap.json b/pfam_gap_rates/Oxidored_FMN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13036da4b5de9d36b4dfb46d56dbbad81d0625fe
--- /dev/null
+++ b/pfam_gap_rates/Oxidored_FMN.gap.json
@@ -0,0 +1 @@
+{"family": "Oxidored_FMN", "n_seqs": 5000, "length": 383, "gap_rates": [0.7512, 0.2964, 0.2642, 0.2188, 0.2086, 0.1936, 0.1806, 0.1744, 0.1688, 0.1658, 0.9132, 0.1522, 0.1426, 0.1386, 0.134, 0.1322, 0.132, 0.1306, 0.13, 0.1224, 0.1214, 0.12, 0.1186, 0.8966, 0.1344, 0.135, 0.1286, 0.1348, 0.1362, 0.1398, 0.154, 0.1702, 0.1358, 0.6672, 0.3088, 0.1452, 0.1388, 0.2324, 0.1196, 0.1038, 0.1032, 0.102, 0.1016, 0.1018, 0.1006, 0.107, 0.0994, 0.0994, 0.099, 0.3574, 0.246, 0.098, 0.0974, 0.0968, 0.0972, 0.0972, 0.0966, 0.0968, 0.0968, 0.0972, 0.0972, 0.0968, 0.0972, 0.0988, 0.1004, 0.1032, 0.1056, 0.941, 0.1066, 0.1048, 0.1052, 0.1066, 0.1044, 0.1052, 0.1026, 0.0984, 0.105, 0.0984, 0.099, 0.0978, 0.0972, 0.0966, 0.0936, 0.0938, 0.0934, 0.093, 0.093, 0.0938, 0.0936, 0.0936, 0.0934, 0.0934, 0.093, 0.0934, 0.093, 0.0944, 0.094, 0.093, 0.0938, 0.094, 0.0946, 0.0942, 0.094, 0.0946, 0.0968, 0.098, 0.0978, 0.0978, 0.0978, 0.1004, 0.2188, 0.9486, 0.212, 0.2022, 0.1342, 0.1286, 0.1224, 0.1236, 0.1322, 0.1414, 0.7482, 0.8526, 0.8962, 0.9176, 0.934, 0.9466, 0.9284, 0.907, 0.8744, 0.8226, 0.6708, 0.4366, 0.3532, 0.1714, 0.1496, 0.1446, 0.4264, 0.3382, 0.3254, 0.1786, 0.167, 0.1664, 0.1764, 0.199, 0.4468, 0.4042, 0.6922, 0.7636, 0.8602, 0.9248, 0.9452, 0.8936, 0.8228, 0.7164, 0.6408, 0.4498, 0.4046, 0.3256, 0.2724, 0.2208, 0.1458, 0.758, 0.9168, 0.9436, 0.8526, 0.532, 0.147, 0.0922, 0.0874, 0.0842, 0.0832, 0.0822, 0.0816, 0.0814, 0.0806, 0.08, 0.079, 0.078, 0.0776, 0.0774, 0.0762, 0.0762, 0.0762, 0.0766, 0.076, 0.076, 0.0764, 0.0774, 0.0776, 0.0778, 0.0772, 0.0778, 0.0784, 0.0786, 0.0784, 0.0784, 0.0786, 0.08, 0.0876, 0.0796, 0.08, 0.0794, 0.0834, 0.0844, 0.0794, 0.0792, 0.0796, 0.0794, 0.0792, 0.0792, 0.0796, 0.0818, 0.0832, 0.0862, 0.088, 0.082, 0.0808, 0.0814, 0.0816, 0.0814, 0.0812, 0.0826, 0.096, 0.0974, 0.099, 0.0948, 0.0916, 0.0908, 0.0848, 0.0826, 0.0818, 0.0822, 0.0824, 0.0822, 0.0826, 0.0836, 0.0836, 0.0838, 0.0834, 0.0838, 0.0854, 0.085, 0.112, 0.1092, 0.0872, 0.0862, 0.0864, 0.9414, 0.4156, 0.0862, 0.0864, 0.0876, 0.0882, 0.0886, 0.0896, 0.09, 0.0924, 0.0934, 0.0984, 0.103, 0.108, 0.1094, 0.1098, 0.9118, 0.1152, 0.1148, 0.115, 0.1136, 0.1122, 0.1144, 0.8544, 0.9482, 0.8678, 0.803, 0.3056, 0.2664, 0.221, 0.1426, 0.1272, 0.1216, 0.1198, 0.1222, 0.124, 0.1342, 0.1458, 0.1524, 0.1684, 0.1774, 0.201, 0.404, 0.37, 0.345, 0.2668, 0.1794, 0.1476, 0.1486, 0.1536, 0.8632, 0.1566, 0.1602, 0.1616, 0.1616, 0.3804, 0.3364, 0.2984, 0.2626, 0.2296, 0.2158, 0.182, 0.1588, 0.1606, 0.1662, 0.1756, 0.191, 0.9128, 0.8574, 0.5168, 0.4658, 0.4158, 0.3244, 0.2772, 0.2394, 0.9256, 0.932, 0.9086, 0.1974, 0.1318, 0.1276, 0.1272, 0.1254, 0.1258, 0.124, 0.1218, 0.121, 0.1216, 0.1216, 0.1208, 0.1214, 0.1202, 0.1196, 0.1204, 0.1192, 0.12, 0.1212, 0.1212, 0.1224, 0.424, 0.1758, 0.129, 0.1234, 0.1248, 0.126, 0.126, 0.1244, 0.125, 0.125, 0.1244, 0.1248, 0.125, 0.125, 0.1256, 0.1262, 0.1264, 0.1264, 0.1266, 0.1266, 0.1272, 0.128, 0.1286, 0.129, 0.1302, 0.1334, 0.136, 0.1604, 0.1794, 0.1966, 0.233, 0.2716, 0.311, 0.3978, 0.5064, 0.6436, 0.8174], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Oxidored_q6.gap.json b/pfam_gap_rates/Oxidored_q6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ac64f251eb6431c8d6c202f2351c384fcf57cd33
--- /dev/null
+++ b/pfam_gap_rates/Oxidored_q6.gap.json
@@ -0,0 +1 @@
+{"family": "Oxidored_q6", "n_seqs": 2890, "length": 189, "gap_rates": [0.5598615916955018, 0.558477508650519, 0.25259515570934254, 0.10103806228373702, 0.09480968858131487, 0.08858131487889273, 0.08719723183391004, 0.08581314878892733, 0.7993079584775087, 0.08408304498269896, 0.0847750865051903, 0.08339100346020761, 0.08166089965397924, 0.08062283737024221, 0.08027681660899653, 0.07993079584775087, 0.07923875432525952, 0.0782006920415225, 0.07785467128027682, 0.6775086505190312, 0.8038062283737024, 0.6750865051903114, 0.6743944636678201, 0.654325259515571, 0.6525951557093426, 0.07335640138408304, 0.07128027681660899, 0.07162629757785467, 0.20449826989619377, 0.09515570934256055, 0.08685121107266436, 0.07577854671280276, 0.09065743944636678, 0.06885813148788927, 0.06470588235294118, 0.06678200692041522, 0.08442906574394464, 0.7813148788927335, 0.7788927335640139, 0.8003460207612457, 0.8152249134948096, 0.8328719723183391, 0.8242214532871972, 0.8017301038062283, 0.7823529411764706, 0.773356401384083, 0.757439446366782, 0.6961937716262976, 0.6750865051903114, 0.6550173010380623, 0.6640138408304498, 0.5865051903114187, 0.01591695501730104, 0.015570934256055362, 0.015570934256055362, 0.01522491349480969, 0.014186851211072665, 0.014186851211072665, 0.014186851211072665, 0.01384083044982699, 0.013494809688581315, 0.013494809688581315, 0.013494809688581315, 0.1477508650519031, 0.14844290657439446, 0.01764705882352941, 0.012802768166089966, 0.8051903114186851, 0.8051903114186851, 0.8076124567474049, 0.8134948096885813, 0.9017301038062284, 0.9397923875432526, 0.9408304498269896, 0.9051903114186851, 0.8259515570934256, 0.8083044982698961, 0.8069204152249135, 0.8051903114186851, 0.8051903114186851, 0.01245674740484429, 0.010380622837370242, 0.010034602076124567, 0.009342560553633217, 0.008996539792387544, 0.00865051903114187, 0.00865051903114187, 0.00865051903114187, 0.008996539792387544, 0.008996539792387544, 0.00726643598615917, 0.00726643598615917, 0.006920415224913495, 0.00657439446366782, 0.006228373702422145, 0.00657439446366782, 0.00657439446366782, 0.005536332179930796, 0.005536332179930796, 0.005190311418685121, 0.005190311418685121, 0.006228373702422145, 0.006228373702422145, 0.006228373702422145, 0.006920415224913495, 0.006920415224913495, 0.006920415224913495, 0.00657439446366782, 0.006228373702422145, 0.006228373702422145, 0.23252595155709344, 0.2411764705882353, 0.07577854671280276, 0.01453287197231834, 0.48546712802768166, 0.44844290657439445, 0.8972318339100346, 0.8698961937716263, 0.1245674740484429, 0.1615916955017301, 0.8373702422145328, 0.8401384083044983, 0.8505190311418686, 0.8557093425605536, 0.8612456747404844, 0.8667820069204152, 0.8750865051903114, 0.898961937716263, 0.9266435986159169, 0.9294117647058824, 0.9301038062283737, 0.9311418685121108, 0.9328719723183391, 0.9394463667820069, 0.9314878892733564, 0.9304498269896194, 0.9301038062283737, 0.9290657439446367, 0.9228373702422146, 0.8844290657439446, 0.870242214532872, 0.8633217993079585, 0.8581314878892734, 0.8539792387543252, 0.841522491349481, 0.8391003460207612, 0.8363321799307959, 0.39100346020761245, 0.9484429065743945, 0.7044982698961938, 0.658477508650519, 0.10484429065743944, 0.03667820069204152, 0.017993079584775088, 0.015570934256055362, 0.01522491349480969, 0.01522491349480969, 0.0314878892733564, 0.916955017301038, 0.9262975778546713, 0.9429065743944637, 0.9432525951557094, 0.9408304498269896, 0.9252595155709342, 0.9121107266435986, 0.008996539792387544, 0.007612456747404845, 0.00795847750865052, 0.2027681660899654, 0.009342560553633217, 0.00795847750865052, 0.008304498269896194, 0.00865051903114187, 0.00865051903114187, 0.010034602076124567, 0.010380622837370242, 0.010726643598615917, 0.011072664359861591, 0.012110726643598616, 0.013494809688581315, 0.01453287197231834, 0.01522491349480969, 0.016955017301038062, 0.01833910034602076, 0.021453287197231833, 0.026643598615916954, 0.05951557093425606, 0.22110726643598616, 0.670242214532872], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/P-II.gap.json b/pfam_gap_rates/P-II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f9fc9762962a511d504d38e4b23fd62c17125cf2
--- /dev/null
+++ b/pfam_gap_rates/P-II.gap.json
@@ -0,0 +1 @@
+{"family": "P-II", "n_seqs": 2478, "length": 107, "gap_rates": [0.09806295399515738, 0.047619047619047616, 0.03268765133171913, 0.03026634382566586, 0.02824858757062147, 0.026230831315577078, 0.025020177562550445, 0.023002421307506054, 0.020984665052461663, 0.020984665052461663, 0.01977401129943503, 0.01977401129943503, 0.018563357546408393, 0.01775625504439064, 0.01533494753833737, 0.01493139628732849, 0.01493139628732849, 0.013317191283292978, 0.0129136400322841, 0.011299435028248588, 0.010088781275221953, 0.010088781275221953, 0.010895883777239709, 0.010492332526230832, 0.009685230024213076, 0.009281678773204197, 0.00887812752219532, 0.009281678773204197, 0.009685230024213076, 0.009685230024213076, 0.007667473769168685, 0.007263922518159807, 0.010492332526230832, 0.009685230024213076, 0.009685230024213076, 0.00887812752219532, 0.00887812752219532, 0.11662631154156577, 0.09846650524616626, 0.08353510895883777, 0.023809523809523808, 0.033091202582728005, 0.020581113801452784, 0.021388216303470542, 0.01735270379338176, 0.013317191283292978, 0.9455205811138014, 0.947134786117837, 0.9495560936238903, 0.9455205811138014, 0.9430992736077481, 0.010895883777239709, 0.010088781275221953, 0.013720742534301856, 0.03470540758676352, 0.03672316384180791, 0.10613397901533494, 0.02784503631961259, 0.018159806295399514, 0.007263922518159807, 0.005649717514124294, 0.005649717514124294, 0.004842615012106538, 0.005246166263115416, 0.004842615012106538, 0.004842615012106538, 0.005246166263115416, 0.004842615012106538, 0.00443906376109766, 0.00443906376109766, 0.00443906376109766, 0.00443906376109766, 0.005246166263115416, 0.005246166263115416, 0.005246166263115416, 0.005246166263115416, 0.005649717514124294, 0.005649717514124294, 0.005246166263115416, 0.005246166263115416, 0.005649717514124294, 0.006053268765133172, 0.007263922518159807, 0.00847457627118644, 0.009281678773204197, 0.009685230024213076, 0.009685230024213076, 0.01775625504439064, 0.01694915254237288, 0.018159806295399514, 0.010492332526230832, 0.010492332526230832, 0.010895883777239709, 0.010492332526230832, 0.010492332526230832, 0.011299435028248588, 0.0129136400322841, 0.014124293785310734, 0.01533494753833737, 0.020581113801452784, 0.023405972558514933, 0.03188054882970137, 0.05286521388216303, 0.06255044390637611, 0.08716707021791767, 0.10008071025020178, 0.15012106537530268], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/P21-Arc.gap.json b/pfam_gap_rates/P21-Arc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..926efba51322bc247f67bd9fc5e2de90f40fd691
--- /dev/null
+++ b/pfam_gap_rates/P21-Arc.gap.json
@@ -0,0 +1 @@
+{"family": "P21-Arc", "n_seqs": 323, "length": 198, "gap_rates": [0.4582043343653251, 0.3993808049535604, 0.19504643962848298, 0.17027863777089783, 0.16408668730650156, 0.1609907120743034, 0.15789473684210525, 0.15479876160990713, 0.15170278637770898, 0.14860681114551083, 0.14551083591331268, 0.8668730650154799, 0.43653250773993807, 0.30030959752321984, 0.16718266253869968, 0.1393188854489164, 0.13312693498452013, 0.13003095975232198, 0.13003095975232198, 0.12693498452012383, 0.09287925696594428, 0.08978328173374613, 0.08668730650154799, 0.08359133126934984, 0.08359133126934984, 0.08359133126934984, 0.08359133126934984, 0.08668730650154799, 0.09287925696594428, 0.09597523219814241, 0.09287925696594428, 0.09287925696594428, 0.08978328173374613, 0.08978328173374613, 0.09287925696594428, 0.09287925696594428, 0.08668730650154799, 0.7616099071207431, 0.7801857585139319, 0.7894736842105263, 0.7956656346749226, 0.7987616099071208, 0.8018575851393189, 0.826625386996904, 0.8978328173374613, 0.8018575851393189, 0.8018575851393189, 0.7956656346749226, 0.7894736842105263, 0.7863777089783281, 0.7801857585139319, 0.6656346749226006, 0.3188854489164087, 0.11145510835913312, 0.06191950464396285, 0.058823529411764705, 0.05572755417956656, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.04953560371517028, 0.04953560371517028, 0.04953560371517028, 0.04953560371517028, 0.04953560371517028, 0.043343653250773995, 0.04643962848297214, 0.04643962848297214, 0.04643962848297214, 0.04643962848297214, 0.04643962848297214, 0.04643962848297214, 0.04643962848297214, 0.04643962848297214, 0.04643962848297214, 0.043343653250773995, 0.04643962848297214, 0.04953560371517028, 0.04953560371517028, 0.04953560371517028, 0.04953560371517028, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.06191950464396285, 0.06501547987616099, 0.06811145510835913, 0.06811145510835913, 0.06811145510835913, 0.06501547987616099, 0.8761609907120743, 0.8854489164086687, 0.8575851393188855, 0.09597523219814241, 0.05572755417956656, 0.058823529411764705, 0.058823529411764705, 0.06191950464396285, 0.06191950464396285, 0.06501547987616099, 0.06501547987616099, 0.06501547987616099, 0.06811145510835913, 0.06811145510835913, 0.06501547987616099, 0.06501547987616099, 0.06501547987616099, 0.06501547987616099, 0.06501547987616099, 0.06501547987616099, 0.06811145510835913, 0.7647058823529411, 0.06501547987616099, 0.06501547987616099, 0.06501547987616099, 0.06501547987616099, 0.06501547987616099, 0.06501547987616099, 0.06501547987616099, 0.06811145510835913, 0.06811145510835913, 0.06811145510835913, 0.06811145510835913, 0.06811145510835913, 0.06811145510835913, 0.06811145510835913, 0.06811145510835913, 0.07120743034055728, 0.07430340557275542, 0.07739938080495357, 0.07120743034055728, 0.12693498452012383, 0.0804953560371517, 0.07739938080495357, 0.0804953560371517, 0.08359133126934984, 0.08668730650154799, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10835913312693499, 0.11145510835913312, 0.10835913312693499, 0.10835913312693499, 0.10835913312693499, 0.10835913312693499, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10835913312693499, 0.10835913312693499, 0.10835913312693499, 0.10835913312693499, 0.10526315789473684, 0.10526315789473684, 0.10835913312693499, 0.7244582043343654, 0.5356037151702786, 0.10835913312693499, 0.11764705882352941, 0.10526315789473684, 0.6780185758513931, 0.9318885448916409, 0.6099071207430341, 0.10835913312693499, 0.10835913312693499, 0.10835913312693499, 0.10835913312693499, 0.14241486068111456, 0.14551083591331268, 0.14551083591331268, 0.14860681114551083, 0.14860681114551083, 0.14860681114551083, 0.14860681114551083, 0.14860681114551083, 0.14860681114551083, 0.14860681114551083, 0.15479876160990713, 0.15789473684210525, 0.2631578947368421, 0.29102167182662536, 0.3498452012383901], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAS_5.gap.json b/pfam_gap_rates/PAS_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..743c5e305ca84b137df335b1d9a954004f562264
--- /dev/null
+++ b/pfam_gap_rates/PAS_5.gap.json
@@ -0,0 +1 @@
+{"family": "PAS_5", "n_seqs": 276, "length": 144, "gap_rates": [0.8188405797101449, 0.7536231884057971, 0.6594202898550725, 0.5398550724637681, 0.43478260869565216, 0.2971014492753623, 0.18478260869565216, 0.12681159420289856, 0.09057971014492754, 0.08695652173913043, 0.07971014492753623, 0.07608695652173914, 0.07608695652173914, 0.07608695652173914, 0.07246376811594203, 0.06884057971014493, 0.06521739130434782, 0.06521739130434782, 0.08695652173913043, 0.06521739130434782, 0.057971014492753624, 0.9021739130434783, 0.03985507246376811, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.03260869565217391, 0.03260869565217391, 0.028985507246376812, 0.028985507246376812, 0.021739130434782608, 0.018115942028985508, 0.018115942028985508, 0.018115942028985508, 0.018115942028985508, 0.018115942028985508, 0.018115942028985508, 0.018115942028985508, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.9202898550724637, 0.014492753623188406, 0.9456521739130435, 0.014492753623188406, 0.9166666666666666, 0.014492753623188406, 0.9420289855072463, 0.043478260869565216, 0.9456521739130435, 0.043478260869565216, 0.9239130434782609, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.014492753623188406, 0.010869565217391304, 0.010869565217391304, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.010869565217391304, 0.007246376811594203, 0.007246376811594203, 0.014492753623188406, 0.007246376811594203, 0.010869565217391304, 0.018115942028985508, 0.014492753623188406, 0.03260869565217391, 0.036231884057971016, 0.06884057971014493, 0.06521739130434782, 0.05434782608695652, 0.050724637681159424, 0.06159420289855073, 0.06159420289855073, 0.07246376811594203, 0.07971014492753623, 0.07971014492753623, 0.08333333333333333, 0.07608695652173914, 0.07608695652173914, 0.07971014492753623, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07971014492753623, 0.08333333333333333, 0.08333333333333333, 0.08695652173913043, 0.08333333333333333, 0.08695652173913043, 0.10144927536231885, 0.09057971014492754, 0.09420289855072464, 0.09420289855072464, 0.09782608695652174, 0.10507246376811594, 0.11956521739130435, 0.11231884057971014, 0.10869565217391304, 0.10869565217391304, 0.11594202898550725, 0.11956521739130435, 0.10869565217391304, 0.8405797101449275, 0.11231884057971014, 0.11231884057971014, 0.10507246376811594, 0.10507246376811594, 0.10869565217391304, 0.10507246376811594, 0.10144927536231885, 0.10144927536231885, 0.10144927536231885, 0.10144927536231885, 0.10144927536231885, 0.10144927536231885, 0.10507246376811594, 0.14855072463768115, 0.14492753623188406, 0.18840579710144928, 0.22826086956521738, 0.30434782608695654, 0.30434782608695654, 0.31521739130434784, 0.35144927536231885, 0.427536231884058, 0.4963768115942029, 0.605072463768116], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PB1.gap.json b/pfam_gap_rates/PB1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..63499ab6c7043ae38d10a13ff7fdfc1904bcca84
--- /dev/null
+++ b/pfam_gap_rates/PB1.gap.json
@@ -0,0 +1 @@
+{"family": "PB1", "n_seqs": 2088, "length": 102, "gap_rates": [0.9425287356321839, 0.5488505747126436, 0.342911877394636, 0.24042145593869732, 0.21839080459770116, 0.17959770114942528, 0.16379310344827586, 0.15134099616858238, 0.14798850574712644, 0.1360153256704981, 0.11829501915708812, 0.11350574712643678, 0.10344827586206896, 0.09770114942528736, 0.8673371647509579, 0.5296934865900383, 0.10057471264367816, 0.07950191570881227, 0.06992337164750957, 0.06561302681992337, 0.05890804597701149, 0.05363984674329502, 0.05028735632183908, 0.9439655172413793, 0.044061302681992334, 0.040708812260536395, 0.03879310344827586, 0.035919540229885055, 0.033045977011494254, 0.032088122605363985, 0.029693486590038315, 0.02921455938697318, 0.027298850574712645, 0.02681992337164751, 0.02681992337164751, 0.025383141762452106, 0.02442528735632184, 0.022988505747126436, 0.022988505747126436, 0.08141762452107279, 0.7112068965517241, 0.8544061302681992, 0.8931992337164751, 0.9396551724137931, 0.9449233716475096, 0.9319923371647509, 0.867816091954023, 0.7787356321839081, 0.5244252873563219, 0.28735632183908044, 0.04885057471264368, 0.010057471264367816, 0.005747126436781609, 0.005747126436781609, 0.0038314176245210726, 0.0023946360153256703, 0.0019157088122605363, 0.0014367816091954023, 0.0009578544061302681, 0.008141762452107279, 0.0028735632183908046, 0.003352490421455939, 0.7552681992337165, 0.033524904214559385, 0.0038314176245210726, 0.004310344827586207, 0.005747126436781609, 0.005747126436781609, 0.006704980842911878, 0.006704980842911878, 0.006704980842911878, 0.006704980842911878, 0.011973180076628353, 0.008620689655172414, 0.009578544061302681, 0.016283524904214558, 0.020593869731800767, 0.022509578544061302, 0.033524904214559385, 0.05699233716475096, 0.09003831417624521, 0.125, 0.15900383141762453, 0.382183908045977, 0.7610153256704981, 0.8045977011494253, 0.9157088122605364, 0.8697318007662835, 0.7739463601532567, 0.7452107279693486, 0.40804597701149425, 0.3783524904214559, 0.3587164750957854, 0.9382183908045977, 0.25526819923371646, 0.2581417624521073, 0.26436781609195403, 0.27298850574712646, 0.29310344827586204, 0.31800766283524906, 0.40900383141762453, 0.6556513409961686], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PC-Esterase.gap.json b/pfam_gap_rates/PC-Esterase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a9ec89f964a9edd5384efe23e34c92d9375a4158
--- /dev/null
+++ b/pfam_gap_rates/PC-Esterase.gap.json
@@ -0,0 +1 @@
+{"family": "PC-Esterase", "n_seqs": 1607, "length": 324, "gap_rates": [0.29993777224642193, 0.27878033602986935, 0.21095208462974488, 0.19663970130678282, 0.19041692594897325, 0.18855009334163036, 0.18668326073428748, 0.18606098319850653, 0.17672682016179217, 0.1748599875544493, 0.17050404480398257, 0.16614810205351588, 0.1611698817672682, 0.15805849408836342, 0.15743621655258244, 0.1555693839452396, 0.1549471064094586, 0.15059116365899192, 0.14561294337274425, 0.1449906658369633, 0.1462352209085252, 0.1462352209085252, 0.14561294337274425, 0.14561294337274425, 0.14250155569383946, 0.1431238332296204, 0.1431238332296204, 0.1431238332296204, 0.1387678904791537, 0.13814561294337274, 0.1375233354075918, 0.13627878033602986, 0.13627878033602986, 0.1375233354075918, 0.1375233354075918, 0.13690105787181084, 0.14063472308649658, 0.2862476664592408, 0.14934660858742999, 0.15121344119477287, 0.9377722464219042, 0.9390168014934661, 0.9421281891723708, 0.9390168014934661, 0.9334163036714375, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PEP-utilisers_N.gap.json b/pfam_gap_rates/PEP-utilisers_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..73280a45c5c147c788a2109c6de3a6409e134da9
--- /dev/null
+++ b/pfam_gap_rates/PEP-utilisers_N.gap.json
@@ -0,0 +1 @@
+{"family": "PEP-utilisers_N", "n_seqs": 1722, "length": 129, "gap_rates": [0.3600464576074332, 0.06445993031358885, 0.04878048780487805, 0.04065040650406504, 0.036585365853658534, 0.0313588850174216, 0.030197444831591175, 0.029616724738675958, 0.026713124274099883, 0.023809523809523808, 0.023228803716608595, 0.02148664343786295, 0.02148664343786295, 0.02148664343786295, 0.02148664343786295, 0.03484320557491289, 0.3826945412311266, 0.7845528455284553, 0.9099883855981417, 0.8554006968641115, 0.45760743321718933, 0.15737514518002324, 0.03426248548199768, 0.023228803716608595, 0.30197444831591175, 0.22996515679442509, 0.15505226480836237, 0.07259001161440186, 0.036004645760743324, 0.03774680603948897, 0.025551684088269456, 0.024390243902439025, 0.015098722415795587, 0.013356562137049941, 0.011614401858304297, 0.009872241579558653, 0.009872241579558653, 0.009291521486643438, 0.009291521486643438, 0.008710801393728223, 0.008130081300813009, 0.007549361207897794, 0.007549361207897794, 0.007549361207897794, 0.007549361207897794, 0.006968641114982578, 0.006387921022067364, 0.006387921022067364, 0.006387921022067364, 0.006387921022067364, 0.006387921022067364, 0.006968641114982578, 0.006387921022067364, 0.006387921022067364, 0.005807200929152149, 0.005807200929152149, 0.005807200929152149, 0.005226480836236934, 0.008130081300813009, 0.036585365853658534, 0.018583042973286876, 0.015098722415795587, 0.17421602787456447, 0.9477351916376306, 0.2706155632984901, 0.12833914053426249, 0.0272938443670151, 0.08304297328687572, 0.07549361207897794, 0.10511033681765389, 0.016260162601626018, 0.009291521486643438, 0.005226480836236934, 0.004645760743321719, 0.004645760743321719, 0.004645760743321719, 0.004645760743321719, 0.004645760743321719, 0.004645760743321719, 0.0040650406504065045, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.004645760743321719, 0.004645760743321719, 0.003484320557491289, 0.003484320557491289, 0.0029036004645760743, 0.0029036004645760743, 0.0029036004645760743, 0.0029036004645760743, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.22357723577235772, 0.006968641114982578, 0.005226480836236934, 0.18699186991869918, 0.007549361207897794, 0.006968641114982578, 0.006968641114982578, 0.006968641114982578, 0.006968641114982578, 0.006968641114982578, 0.006968641114982578, 0.006968641114982578, 0.006968641114982578, 0.006968641114982578, 0.006968641114982578, 0.006968641114982578, 0.007549361207897794, 0.008130081300813009, 0.011033681765389082, 0.011614401858304297, 0.012775842044134728, 0.0156794425087108, 0.01684088269454123, 0.018583042973286876, 0.9442508710801394, 0.020905923344947737, 0.023809523809523808, 0.13240418118466898, 0.028455284552845527, 0.0272938443670151, 0.029036004645760744, 0.03542392566782811, 0.04936120789779326], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PGM_PMM_I.gap.json b/pfam_gap_rates/PGM_PMM_I.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0222ea935ecf15326d860594fe51217404d5a00c
--- /dev/null
+++ b/pfam_gap_rates/PGM_PMM_I.gap.json
@@ -0,0 +1 @@
+{"family": "PGM_PMM_I", "n_seqs": 5000, "length": 157, "gap_rates": [0.9304, 0.462, 0.2296, 0.1786, 0.1612, 0.1572, 0.1284, 0.1266, 0.1246, 0.1242, 0.122, 0.1212, 0.1202, 0.1192, 0.4016, 0.131, 0.2688, 0.7604, 0.948, 0.7596, 0.1652, 0.1054, 0.1044, 0.1022, 0.1008, 0.0994, 0.0978, 0.0948, 0.0934, 0.0924, 0.091, 0.0892, 0.0876, 0.0868, 0.0872, 0.0866, 0.0856, 0.0842, 0.0852, 0.2328, 0.7056, 0.8806, 0.9458, 0.7748, 0.5586, 0.3118, 0.1814, 0.1326, 0.0732, 0.0644, 0.0628, 0.0622, 0.0616, 0.0614, 0.0614, 0.0614, 0.0614, 0.0614, 0.0612, 0.06, 0.0596, 0.0596, 0.059, 0.0592, 0.0596, 0.0596, 0.0594, 0.0592, 0.0592, 0.059, 0.0592, 0.0588, 0.059, 0.0588, 0.0584, 0.0584, 0.058, 0.0582, 0.0582, 0.0582, 0.0574, 0.0576, 0.0568, 0.8552, 0.8594, 0.6218, 0.0568, 0.0568, 0.0566, 0.0562, 0.0558, 0.0552, 0.0542, 0.0546, 0.0552, 0.0552, 0.0526, 0.0504, 0.0504, 0.0676, 0.0576, 0.9162, 0.9278, 0.9418, 0.93, 0.9192, 0.909, 0.0534, 0.0448, 0.0458, 0.076, 0.0472, 0.0464, 0.0464, 0.0466, 0.0476, 0.0488, 0.0482, 0.0478, 0.0478, 0.047, 0.0472, 0.0474, 0.0472, 0.047, 0.9128, 0.9132, 0.9118, 0.0468, 0.047, 0.0468, 0.0474, 0.0482, 0.0492, 0.099, 0.071, 0.0776, 0.0696, 0.0698, 0.0694, 0.0778, 0.0852, 0.1066, 0.127, 0.1222, 0.1322, 0.1374, 0.1452, 0.1526, 0.1608, 0.1756, 0.2266, 0.3134, 0.495, 0.6608, 0.8194, 0.9256], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PGM_PMM_III.gap.json b/pfam_gap_rates/PGM_PMM_III.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..07d399318a663b3d31b60a90529c9130760d4ae9
--- /dev/null
+++ b/pfam_gap_rates/PGM_PMM_III.gap.json
@@ -0,0 +1 @@
+{"family": "PGM_PMM_III", "n_seqs": 5000, "length": 139, "gap_rates": [0.5344, 0.208, 0.141, 0.0942, 0.0648, 0.0538, 0.047, 0.041, 0.0394, 0.0376, 0.0376, 0.043, 0.036, 0.0464, 0.046, 0.121, 0.7108, 0.8426, 0.8948, 0.808, 0.4468, 0.3432, 0.2892, 0.109, 0.1408, 0.0264, 0.9404, 0.9434, 0.9314, 0.122, 0.8524, 0.2706, 0.0118, 0.0106, 0.0104, 0.01, 0.0094, 0.0088, 0.0086, 0.0086, 0.0086, 0.0084, 0.008, 0.007, 0.007, 0.007, 0.024, 0.0196, 0.0146, 0.0118, 0.0096, 0.0152, 0.007, 0.0062, 0.0064, 0.0054, 0.004, 0.0036, 0.0034, 0.0034, 0.0036, 0.0034, 0.0036, 0.004, 0.0036, 0.003, 0.0032, 0.0268, 0.0262, 0.0268, 0.0122, 0.0082, 0.773, 0.797, 0.8942, 0.8274, 0.7882, 0.7624, 0.0062, 0.0044, 0.0042, 0.004, 0.004, 0.0042, 0.0046, 0.006, 0.9012, 0.0048, 0.0048, 0.0052, 0.0056, 0.0072, 0.0094, 0.0182, 0.0168, 0.9192, 0.9286, 0.9294, 0.9286, 0.9008, 0.1196, 0.109, 0.0192, 0.9432, 0.0188, 0.0184, 0.0192, 0.0194, 0.0198, 0.0198, 0.0196, 0.0198, 0.0202, 0.0204, 0.021, 0.0218, 0.0222, 0.023, 0.0244, 0.7532, 0.765, 0.753, 0.0306, 0.0478, 0.067, 0.0704, 0.0572, 0.0596, 0.0622, 0.0654, 0.0722, 0.0806, 0.3078, 0.1634, 0.2762, 0.3528, 0.4672, 0.5826, 0.6856], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PGM_PMM_IV.gap.json b/pfam_gap_rates/PGM_PMM_IV.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8aac7d5c3ee260c5eb287d3cdddb0dc2ca0d9b2b
--- /dev/null
+++ b/pfam_gap_rates/PGM_PMM_IV.gap.json
@@ -0,0 +1 @@
+{"family": "PGM_PMM_IV", "n_seqs": 5000, "length": 102, "gap_rates": [0.6822, 0.6394, 0.5896, 0.575, 0.564, 0.5544, 0.5462, 0.5408, 0.5394, 0.589, 0.5756, 0.9168, 0.8538, 0.6872, 0.4456, 0.4096, 0.3912, 0.3784, 0.3668, 0.3574, 0.3554, 0.378, 0.3552, 0.373, 0.496, 0.5794, 0.6564, 0.7666, 0.8124, 0.8474, 0.8792, 0.9158, 0.9422, 0.898, 0.8582, 0.8288, 0.7886, 0.727, 0.6272, 0.5644, 0.3894, 0.0846, 0.0696, 0.0468, 0.0408, 0.0404, 0.0314, 0.0284, 0.0248, 0.0196, 0.0182, 0.0138, 0.0188, 0.0058, 0.004, 0.0026, 0.5624, 0.941, 0.944, 0.9444, 0.9444, 0.9442, 0.9432, 0.9396, 0.0002, 0.0004, 0.0002, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9256, 0.9256, 0.9254, 0.0004, 0.0004, 0.0004, 0.0004, 0.001, 0.0112, 0.0198, 0.0306, 0.7316, 0.0588, 0.081, 0.0998, 0.1184, 0.1384, 0.157, 0.1798, 0.2066, 0.2328, 0.267, 0.3016, 0.3454, 0.3938, 0.4484, 0.54, 0.6538, 0.9386], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PG_binding_1.gap.json b/pfam_gap_rates/PG_binding_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..19dd02c9edd854fe9072dd28fd587cf0ab4f938c
--- /dev/null
+++ b/pfam_gap_rates/PG_binding_1.gap.json
@@ -0,0 +1 @@
+{"family": "PG_binding_1", "n_seqs": 5000, "length": 65, "gap_rates": [0.8198, 0.4918, 0.3712, 0.2894, 0.2226, 0.1836, 0.1496, 0.1234, 0.1092, 0.0964, 0.0822, 0.0764, 0.0758, 0.0722, 0.071, 0.0752, 0.0716, 0.088, 0.7952, 0.8918, 0.9268, 0.8624, 0.7066, 0.1792, 0.0648, 0.939, 0.0468, 0.0434, 0.0312, 0.9484, 0.9356, 0.02, 0.015, 0.0134, 0.0112, 0.0094, 0.008, 0.0054, 0.003, 0.0016, 0.0012, 0.0006, 0.001, 0.0012, 0.0034, 0.006, 0.0066, 0.009, 0.0118, 0.0172, 0.0224, 0.0286, 0.0408, 0.0456, 0.0446, 0.0488, 0.0542, 0.0634, 0.0728, 0.0904, 0.1036, 0.126, 0.1852, 0.2644, 0.3934], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PHM7_cyt.gap.json b/pfam_gap_rates/PHM7_cyt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e69138f91e8e027e2b9a406ef8a61075487e3178
--- /dev/null
+++ b/pfam_gap_rates/PHM7_cyt.gap.json
@@ -0,0 +1 @@
+{"family": "PHM7_cyt", "n_seqs": 1410, "length": 273, "gap_rates": [0.4021276595744681, 0.20212765957446807, 0.18652482269503545, 0.18085106382978725, 0.17659574468085107, 0.17446808510638298, 0.1723404255319149, 0.17163120567375886, 0.17163120567375886, 0.17163120567375886, 0.17092198581560283, 0.1702127659574468, 0.16879432624113475, 0.16808510638297872, 0.21773049645390072, 0.16170212765957448, 0.7595744680851064, 0.9347517730496454, 0.7439716312056738, 0.16453900709219857, 0.1624113475177305, 0.1574468085106383, 0.1574468085106383, 0.15390070921985816, 0.15531914893617021, 0.15390070921985816, 0.16382978723404254, 0.22198581560283687, 0.20638297872340425, 0.28794326241134754, 0.25957446808510637, 0.2397163120567376, 0.24326241134751772, 0.251063829787234, 0.43546099290780144, 0.150354609929078, 0.12198581560283688, 0.3028368794326241, 0.1198581560283688, 0.11914893617021277, 0.11702127659574468, 0.11631205673758865, 0.11560283687943262, 0.11560283687943262, 0.11347517730496454, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PHR.gap.json b/pfam_gap_rates/PHR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f027d8dbf86cb01a7033f914c521a1972dcd57d0
--- /dev/null
+++ b/pfam_gap_rates/PHR.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PH_BEACH.gap.json b/pfam_gap_rates/PH_BEACH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b4435bc1467cb4cbf63ad923c10676b83f970cea
--- /dev/null
+++ b/pfam_gap_rates/PH_BEACH.gap.json
@@ -0,0 +1 @@
+{"family": "PH_BEACH", "n_seqs": 696, "length": 132, "gap_rates": [0.6566091954022989, 0.6005747126436781, 0.5603448275862069, 0.5387931034482759, 0.5373563218390804, 0.5373563218390804, 0.5301724137931034, 0.5186781609195402, 0.5114942528735632, 0.5043103448275862, 0.4985632183908046, 0.49712643678160917, 0.4956896551724138, 0.4870689655172414, 0.48419540229885055, 0.4827586206896552, 0.4827586206896552, 0.4827586206896552, 0.47988505747126436, 0.47701149425287354, 0.47413793103448276, 0.47270114942528735, 0.47270114942528735, 0.4899425287356322, 0.4813218390804598, 0.46551724137931033, 0.8290229885057471, 0.8491379310344828, 0.8563218390804598, 0.8663793103448276, 0.8764367816091954, 0.8793103448275862, 0.8836206896551724, 0.889367816091954, 0.8994252873563219, 0.9051724137931034, 0.9123563218390804, 0.9310344827586207, 0.9396551724137931, 0.9410919540229885, 0.9468390804597702, 0.9468390804597702, 0.9425287356321839, 0.9396551724137931, 0.9382183908045977, 0.9123563218390804, 0.9066091954022989, 0.9022988505747126, 0.8908045977011494, 0.8850574712643678, 0.8793103448275862, 0.8778735632183908, 0.875, 0.8591954022988506, 0.8505747126436781, 0.8362068965517241, 0.8089080459770115, 0.7370689655172413, 0.7112068965517241, 0.6364942528735632, 0.6235632183908046, 0.5732758620689655, 0.5531609195402298, 0.5387931034482759, 0.4942528735632184, 0.45545977011494254, 0.4339080459770115, 0.40660919540229884, 0.37212643678160917, 0.3218390804597701, 0.3146551724137931, 0.28735632183908044, 0.2514367816091954, 0.21695402298850575, 0.16379310344827586, 0.1307471264367816, 0.10488505747126436, 0.07902298850574713, 0.06752873563218391, 0.04885057471264368, 0.02586206896551724, 0.01867816091954023, 0.017241379310344827, 0.015804597701149427, 0.014367816091954023, 0.01293103448275862, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.0014367816091954023, 0.0, 0.0014367816091954023, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0014367816091954023, 0.0014367816091954023, 0.0014367816091954023, 0.0014367816091954023, 0.0014367816091954023, 0.01293103448275862, 0.0028735632183908046, 0.004310344827586207, 0.005747126436781609, 0.007183908045977011, 0.9425287356321839, 0.008620689655172414, 0.008620689655172414, 0.010057471264367816, 0.010057471264367816, 0.010057471264367816, 0.28879310344827586, 0.02442528735632184, 0.034482758620689655, 0.03735632183908046, 0.04885057471264368, 0.05459770114942529, 0.06321839080459771, 0.07614942528735633, 0.07902298850574713, 0.10488505747126436, 0.14367816091954022, 0.2025862068965517, 0.3175287356321839, 0.9396551724137931], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PLDc.gap.json b/pfam_gap_rates/PLDc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d5b43771104e16569c9709fdc0a292ccebbc67fc
--- /dev/null
+++ b/pfam_gap_rates/PLDc.gap.json
@@ -0,0 +1 @@
+{"family": "PLDc", "n_seqs": 1311, "length": 39, "gap_rates": [0.8360030511060259, 0.32265446224256294, 0.13653699466056446, 0.07017543859649122, 0.041952707856598014, 0.0038138825324180014, 0.0038138825324180014, 0.002288329519450801, 0.002288329519450801, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7650648360030511, 0.7673531655225019, 0.7704042715484363, 0.7780320366132724, 0.9130434782608695, 0.9252479023646072, 0.9038901601830663, 0.7757437070938215, 0.7681159420289855, 0.7650648360030511, 0.7650648360030511, 0.006102212051868803, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0030511060259344014, 0.010678871090770405, 0.03737604881769641, 0.04652936689549962, 0.06331045003813883], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PLU-1.gap.json b/pfam_gap_rates/PLU-1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9247e2bccfc807d586df093776efcde0f37d713b
--- /dev/null
+++ b/pfam_gap_rates/PLU-1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/POLO_box.gap.json b/pfam_gap_rates/POLO_box.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..968580f494723964fb6fda7375d754ace4f081ae
--- /dev/null
+++ b/pfam_gap_rates/POLO_box.gap.json
@@ -0,0 +1 @@
+{"family": "POLO_box", "n_seqs": 697, "length": 81, "gap_rates": [0.25968436154949787, 0.12338593974175036, 0.10186513629842181, 0.08751793400286945, 0.04447632711621234, 0.04160688665710186, 0.035868005738880916, 0.03012912482065997, 0.020086083213773313, 0.01291248206599713, 0.007173601147776184, 0.010043041606886656, 0.005738880918220947, 0.005738880918220947, 0.005738880918220947, 0.00430416068866571, 0.0028694404591104736, 0.0028694404591104736, 0.0028694404591104736, 0.8034433285509326, 0.0028694404591104736, 0.0, 0.0, 0.0, 0.0, 0.0014347202295552368, 0.0014347202295552368, 0.0014347202295552368, 0.007173601147776184, 0.011477761836441894, 0.021520803443328552, 0.024390243902439025, 0.01291248206599713, 0.024390243902439025, 0.027259684361549498, 0.9411764705882353, 0.9296987087517934, 0.03299856527977044, 0.03443328550932568, 0.035868005738880916, 0.03873744619799139, 0.03873744619799139, 0.8048780487804879, 0.8206599713055954, 0.9225251076040172, 0.9469153515064562, 0.9325681492109039, 0.8464849354375896, 0.8134863701578192, 0.7948350071736011, 0.06599713055954089, 0.07890961262553801, 0.07317073170731707, 0.0703012912482066, 0.07317073170731707, 0.07747489239598278, 0.08751793400286945, 0.08608321377331421, 0.08034433285509325, 0.09899569583931134, 0.5294117647058824, 0.6011477761836442, 0.926829268292683, 0.945480631276901, 0.9383070301291249, 0.6685796269727403, 0.5681492109038737, 0.45911047345767575, 0.09469153515064563, 0.09325681492109039, 0.14347202295552366, 0.1449067431850789, 0.1492109038737446, 0.15494978479196556, 0.16355810616929697, 0.1678622668579627, 0.17216642754662842, 0.18651362984218078, 0.22955523672883787, 0.2682926829268293, 0.5724533715925395], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PP1_inhibitor.gap.json b/pfam_gap_rates/PP1_inhibitor.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..42612eb66787ee439f6a3d1f5d2452079abb9fe3
--- /dev/null
+++ b/pfam_gap_rates/PP1_inhibitor.gap.json
@@ -0,0 +1 @@
+{"family": "PP1_inhibitor", "n_seqs": 104, "length": 141, "gap_rates": [0.9230769230769231, 0.9230769230769231, 0.9230769230769231, 0.9134615384615384, 0.9038461538461539, 0.8942307692307693, 0.8846153846153846, 0.875, 0.8461538461538461, 0.8461538461538461, 0.8461538461538461, 0.8076923076923077, 0.8076923076923077, 0.7884615384615384, 0.7788461538461539, 0.7788461538461539, 0.7403846153846154, 0.7403846153846154, 0.7115384615384616, 0.9326923076923077, 0.9230769230769231, 0.6634615384615384, 0.5961538461538461, 0.5384615384615384, 0.5, 0.4519230769230769, 0.4423076923076923, 0.41346153846153844, 0.9423076923076923, 0.9326923076923077, 0.38461538461538464, 0.33653846153846156, 0.2692307692307692, 0.25961538461538464, 0.25, 0.25961538461538464, 0.25961538461538464, 0.2403846153846154, 0.20192307692307693, 0.20192307692307693, 0.20192307692307693, 0.20192307692307693, 0.20192307692307693, 0.20192307692307693, 0.19230769230769232, 0.18269230769230768, 0.15384615384615385, 0.7692307692307693, 0.7692307692307693, 0.7692307692307693, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.14423076923076922, 0.14423076923076922, 0.14423076923076922, 0.14423076923076922, 0.14423076923076922, 0.14423076923076922, 0.14423076923076922, 0.14423076923076922, 0.14423076923076922, 0.1346153846153846, 0.1346153846153846, 0.1346153846153846, 0.1346153846153846, 0.1346153846153846, 0.14423076923076922, 0.1346153846153846, 0.14423076923076922, 0.09615384615384616, 0.10576923076923077, 0.11538461538461539, 0.1346153846153846, 0.14423076923076922, 0.2403846153846154, 0.18269230769230768, 0.5961538461538461, 0.09615384615384616, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.08653846153846154, 0.08653846153846154, 0.08653846153846154, 0.11538461538461539, 0.11538461538461539, 0.09615384615384616, 0.14423076923076922, 0.125, 0.1346153846153846, 0.14423076923076922, 0.18269230769230768, 0.21153846153846154, 0.22115384615384615, 0.23076923076923078, 0.2403846153846154, 0.9326923076923077, 0.9326923076923077, 0.25, 0.25, 0.9230769230769231, 0.9230769230769231, 0.9038461538461539, 0.25, 0.25, 0.25, 0.25961538461538464, 0.2403846153846154, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.2403846153846154, 0.2403846153846154, 0.2403846153846154, 0.2403846153846154, 0.41346153846153844, 0.49038461538461536, 0.49038461538461536, 0.49038461538461536, 0.5769230769230769, 0.5961538461538461, 0.6346153846153846, 0.8076923076923077, 0.8173076923076923, 0.8365384615384616, 0.9134615384615384, 0.9230769230769231, 0.9423076923076923, 0.9423076923076923, 0.9423076923076923], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PRD.gap.json b/pfam_gap_rates/PRD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..180cd3fb23b43eb3dc88d44d07b8bc6694cb0477
--- /dev/null
+++ b/pfam_gap_rates/PRD.gap.json
@@ -0,0 +1 @@
+{"family": "PRD", "n_seqs": 3017, "length": 95, "gap_rates": [0.8279748094133245, 0.4060324825986079, 0.2515744116672191, 0.18395757374875704, 0.15777262180974477, 0.13622804110043088, 0.12462711302618495, 0.11070599933708983, 0.09744779582366589, 0.08750414318859795, 0.08021213125621478, 0.07126284388465363, 0.07391448458733842, 0.05203844879018893, 0.04209479615512098, 0.5495525356314219, 0.5014915478952602, 0.03148823334438183, 0.026516407026847863, 0.02121312562147829, 0.0188929400066291, 0.01690420947961551, 0.013258203513423931, 0.010606562810739144, 0.008617832283725556, 0.008286377195889956, 0.007954922108054359, 0.007954922108054359, 0.007623467020218761, 0.007292011932383162, 0.007292011932383162, 0.006629101756711966, 0.006629101756711966, 0.006297646668876367, 0.0069605568445475635, 0.006629101756711966, 0.007292011932383162, 0.0069605568445475635, 0.006297646668876367, 0.7205833609545906, 0.9356977129598939, 0.8471992045077892, 0.6702021876035797, 0.020550215445807093, 0.007623467020218761, 0.0069605568445475635, 0.006629101756711966, 0.007292011932383162, 0.005303281405369572, 0.004640371229698376, 0.004640371229698376, 0.014915478952601922, 0.008949287371561154, 0.004971826317533974, 0.006297646668876367, 0.012595293337752734, 0.14584023864766324, 0.1511435200530328, 0.01690420947961551, 0.00961219754723235, 0.009280742459396751, 0.005634736493205171, 0.004971826317533974, 0.004640371229698376, 0.003977461054027179, 0.004308916141862778, 0.004640371229698376, 0.004971826317533974, 0.006297646668876367, 0.006629101756711966, 0.006297646668876367, 0.006629101756711966, 0.005303281405369572, 0.010938017898574744, 0.04242625124295658, 0.049055352999668546, 0.02883659264169705, 0.02088167053364269, 0.017898574743122307, 0.007623467020218761, 0.007623467020218761, 0.008617832283725556, 0.0069605568445475635, 0.007954922108054359, 0.007623467020218761, 0.008617832283725556, 0.010275107722903546, 0.010938017898574744, 0.015246934040437522, 0.027510772290354656, 0.036128604574080216, 0.04640371229698376, 0.12230692741133577, 0.2896917467683129, 0.7901889294000662], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PRESAN.gap.json b/pfam_gap_rates/PRESAN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b1f2bd52ce87e65abf0de9ad516b9314c929b0ab
--- /dev/null
+++ b/pfam_gap_rates/PRESAN.gap.json
@@ -0,0 +1 @@
+{"family": "PRESAN", "n_seqs": 140, "length": 149, "gap_rates": [0.7142857142857143, 0.45, 0.3142857142857143, 0.21428571428571427, 0.17857142857142858, 0.15, 0.11428571428571428, 0.10714285714285714, 0.10714285714285714, 0.1, 0.09285714285714286, 0.09285714285714286, 0.08571428571428572, 0.1, 0.9, 0.8714285714285714, 0.1, 0.95, 0.8785714285714286, 0.06428571428571428, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.06428571428571428, 0.06428571428571428, 0.07857142857142857, 0.06428571428571428, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05, 0.05, 0.05, 0.05714285714285714, 0.04285714285714286, 0.9142857142857143, 0.9214285714285714, 0.9357142857142857, 0.95, 0.9428571428571428, 0.9285714285714286, 0.9214285714285714, 0.9, 0.03571428571428571, 0.05714285714285714, 0.05714285714285714, 0.07857142857142857, 0.07857142857142857, 0.95, 0.08571428571428572, 0.08571428571428572, 0.05, 0.9, 0.9071428571428571, 0.9142857142857143, 0.95, 0.95, 0.9214285714285714, 0.9142857142857143, 0.9, 0.9, 0.04285714285714286, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.03571428571428571, 0.02142857142857143, 0.02142857142857143, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.9357142857142857, 0.05, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.2357142857142857, 0.9214285714285714, 0.05, 0.05, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.05, 0.05, 0.05, 0.05, 0.05, 0.06428571428571428, 0.08571428571428572, 0.1357142857142857, 0.22857142857142856, 0.29285714285714287], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PRK.gap.json b/pfam_gap_rates/PRK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a4b53e44470c130a47bee9243b3e99c5273fd58e
--- /dev/null
+++ b/pfam_gap_rates/PRK.gap.json
@@ -0,0 +1 @@
+{"family": "PRK", "n_seqs": 3269, "length": 219, "gap_rates": [0.27164270419088404, 0.12480881003364944, 0.10767818904863873, 0.07219333129397369, 0.07096971550933007, 0.07066381156316917, 0.07066381156316917, 0.07035790761700826, 0.07005200367084735, 0.07005200367084735, 0.07005200367084735, 0.06974609972468644, 0.0666870602630774, 0.0669929642092383, 0.0669929642092383, 0.06638115631691649, 0.0666870602630774, 0.06607525237075558, 0.0669929642092383, 0.06821657999388192, 0.06852248394004283, 0.06852248394004283, 0.06852248394004283, 0.0666870602630774, 0.27684307127561947, 0.25328846742122973, 0.2615478739675742, 0.2239216885897828, 0.2334047109207709, 0.7038849801162435, 0.6797185683695319, 0.6714591618231875, 0.6442337106148669, 0.49525848883450596, 0.35270724992352404, 0.2811257265218721, 0.24166411746711533, 0.12695013765677576, 0.12174977057204038, 0.14591618231875192, 0.13765677577240745, 0.11960844294891404, 0.11624349954114407, 0.09605383909452432, 0.08840624044050169, 0.09697155093300704, 0.09635974304068523, 0.08289996940960538, 0.0890180483328235, 0.09268889568675436, 0.08504129703273172, 0.08442948914040992, 0.10676047721015601, 0.12236157846436219, 0.13520954420312023, 0.14377485469562556, 0.1609054756806363, 0.3836035484857755, 0.3193637197919853, 0.16274089935760172, 0.21994493728969103, 0.2181095136127256, 0.20923829917405934, 0.10431324564086877, 0.0783114102171918, 0.057815845824411134, 0.05200367084735393, 0.0501682471703885, 0.04955643927806669, 0.04802691954726216, 0.04649739981645763, 0.046803303762618535, 0.04527378403181401, 0.04435607219333129, 0.04252064851636586, 0.041297032731722236, 0.04007341694707862, 0.03884980116243499, 0.03854389721627409, 0.03854389721627409, 0.041602936677883146, 0.037626185377791374, 0.03701437748546956, 0.039461609054756805, 0.03701437748546956, 0.9112878556133374, 0.03548485775466503, 0.03640256959314775, 0.033955338023860505, 0.033955338023860505, 0.03487304986234322, 0.0333435301315387, 0.03273172223921689, 0.03303762618537779, 0.03303762618537779, 0.03303762618537779, 0.03303762618537779, 0.03303762618537779, 0.033955338023860505, 0.0336494340776996, 0.03517895380850413, 0.03579076170082594, 0.8923218109513613, 0.9177118384827164, 0.9186295503211992, 0.9219944937289691, 0.9235240134597736, 0.9213826858366473, 0.9183236463750383, 0.9155705108595901, 0.8112572652187213, 0.446619761394922, 0.10706638115631692, 0.034261241970021415, 0.03517895380850413, 0.030896298562251453, 0.03273172223921689, 0.028754970939125116, 0.02691954726215968, 0.026613643315998775, 0.026307739369837872, 0.024778219639033344, 0.023554603854389723, 0.02386050780055063, 0.02386050780055063, 0.02416641174671153, 0.025390027531355153, 0.029978586723768737, 0.03517895380850413, 0.04649739981645763, 0.04221474457020496, 0.06393392474762924, 0.06393392474762924, 0.06546344447843377, 0.06240440501682472, 0.5897828081982257, 0.7485469562557358, 0.8550015295197309, 0.8724380544509024, 0.8840624044050168, 0.9431018660140715, 0.8758029978586723, 0.867237687366167, 0.8167635362496176, 0.5931477516059958, 0.5839706332211686, 0.06026307739369838, 0.05903946160905476, 0.054450902416641175, 0.05506271030896299, 0.05383909452431936, 0.054450902416641175, 0.05506271030896299, 0.05536861425512389, 0.055674518201284794, 0.057815845824411134, 0.05812174977057204, 0.05689813398592842, 0.057815845824411134, 0.06362802080146834, 0.08289996940960538, 0.10523095747935149, 0.1345977363107984, 0.14255123891098195, 0.145610278372591, 0.14622208626491282, 0.14683389415723463, 0.14836341388803917, 0.1508106454573264, 0.15417558886509636, 0.1569287243805445, 0.20832058733557662, 0.21963903334353013, 0.23891098195166718, 0.2465585806056898, 0.25573569899051696, 0.2633832976445396, 0.2618537779137351, 0.2615478739675742, 0.2627714897522178, 0.2624655858060569, 0.26521872132150504, 0.2679718568369532, 0.2643010094830223, 0.2658305292138269, 0.2658305292138269, 0.26613643315998775, 0.2682777607831141, 0.5974304068522484, 0.27714897522178034, 0.2792903028449067, 0.2792903028449067, 0.2737840318140104, 0.2743958397063322, 0.2753135515448149, 0.2762312633832976, 0.278372591006424, 0.278372591006424, 0.2786784949525849, 0.27990211073722854, 0.28081982257571125, 0.2826552462526767, 0.28296115019883755, 0.2844906699296421, 0.2860201896604466, 0.2866319975527684, 0.28693790149892934, 0.28785561333741205, 0.2906087488528602, 0.2964209238299174, 0.3435301315386968, 0.4163352707249924, 0.5258488834505965, 0.5628632609360661, 0.5879473845212603, 0.5980422147445702, 0.6219027225451208, 0.634444784337718, 0.9021107372285102], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PYC_OADA.gap.json b/pfam_gap_rates/PYC_OADA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..846f53742e066e05d203b6e7feb768e7faff851e
--- /dev/null
+++ b/pfam_gap_rates/PYC_OADA.gap.json
@@ -0,0 +1 @@
+{"family": "PYC_OADA", "n_seqs": 1530, "length": 220, "gap_rates": [0.25882352941176473, 0.2045751633986928, 0.08431372549019608, 0.0784313725490196, 0.058823529411764705, 0.05620915032679739, 0.05555555555555555, 0.054901960784313725, 0.054901960784313725, 0.054901960784313725, 0.054901960784313725, 0.0542483660130719, 0.05228758169934641, 0.05228758169934641, 0.05163398692810457, 0.05163398692810457, 0.05163398692810457, 0.05163398692810457, 0.05163398692810457, 0.05163398692810457, 0.05163398692810457, 0.05032679738562092, 0.0457516339869281, 0.048366013071895426, 0.043137254901960784, 0.050980392156862744, 0.03986928104575163, 0.0392156862745098, 0.03529411764705882, 0.03202614379084967, 0.025490196078431372, 0.018300653594771243, 0.018300653594771243, 0.01699346405228758, 0.016339869281045753, 0.018300653594771243, 0.018300653594771243, 0.0196078431372549, 0.0196078431372549, 0.018300653594771243, 0.018300653594771243, 0.018300653594771243, 0.0196078431372549, 0.01895424836601307, 0.03594771241830065, 0.0196078431372549, 0.0196078431372549, 0.02091503267973856, 0.021568627450980392, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.02287581699346405, 0.02091503267973856, 0.02091503267973856, 0.02091503267973856, 0.02091503267973856, 0.4797385620915033, 0.48104575163398694, 0.48169934640522877, 0.49084967320261436, 0.49084967320261436, 0.4392156862745098, 0.42026143790849674, 0.41830065359477125, 0.10261437908496732, 0.12156862745098039, 0.32745098039215687, 0.022222222222222223, 0.022222222222222223, 0.021568627450980392, 0.021568627450980392, 0.02091503267973856, 0.020261437908496733, 0.020261437908496733, 0.020261437908496733, 0.020261437908496733, 0.02091503267973856, 0.02091503267973856, 0.02091503267973856, 0.02091503267973856, 0.020261437908496733, 0.02091503267973856, 0.020261437908496733, 0.020261437908496733, 0.02091503267973856, 0.02091503267973856, 0.02091503267973856, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.023529411764705882, 0.02483660130718954, 0.021568627450980392, 0.021568627450980392, 0.020261437908496733, 0.020261437908496733, 0.0196078431372549, 0.0196078431372549, 0.02287581699346405, 0.8901960784313725, 0.9470588235294117, 0.8241830065359477, 0.03790849673202614, 0.044444444444444446, 0.028104575163398694, 0.03594771241830065, 0.14248366013071895, 0.0915032679738562, 0.040522875816993466, 0.026143790849673203, 0.024183006535947713, 0.02091503267973856, 0.023529411764705882, 0.026143790849673203, 0.9444444444444444, 0.021568627450980392, 0.020261437908496733, 0.02091503267973856, 0.43137254901960786, 0.03202614379084967, 0.11830065359477124, 0.10980392156862745, 0.10522875816993464, 0.08758169934640522, 0.027450980392156862, 0.025490196078431372, 0.02483660130718954, 0.025490196078431372, 0.027450980392156862, 0.027450980392156862, 0.048366013071895426, 0.043137254901960784, 0.9091503267973856, 0.9398692810457516, 0.8915032679738563, 0.042483660130718956, 0.5045751633986928, 0.8875816993464052, 0.9411764705882353, 0.9398692810457516, 0.5790849673202615, 0.4947712418300654, 0.024183006535947713, 0.022222222222222223, 0.022222222222222223, 0.02287581699346405, 0.02287581699346405, 0.02287581699346405, 0.02287581699346405, 0.02287581699346405, 0.02287581699346405, 0.022222222222222223, 0.022222222222222223, 0.02287581699346405, 0.02287581699346405, 0.023529411764705882, 0.02679738562091503, 0.030065359477124184, 0.03071895424836601, 0.03137254901960784, 0.03137254901960784, 0.032679738562091505, 0.048366013071895426, 0.0542483660130719, 0.06209150326797386, 0.8699346405228758, 0.8993464052287582, 0.9183006535947712, 0.930718954248366, 0.9411764705882353, 0.9228758169934641, 0.9111111111111111, 0.8784313725490196, 0.8647058823529412, 0.07973856209150326, 0.17908496732026144, 0.1869281045751634, 0.2326797385620915, 0.24444444444444444, 0.2568627450980392, 0.269281045751634, 0.2738562091503268, 0.27712418300653596, 0.28627450980392155, 0.2856209150326797, 0.28954248366013075, 0.29934640522875816, 0.29934640522875816, 0.29869281045751633, 0.29934640522875816, 0.3032679738562091, 0.30522875816993467, 0.2934640522875817, 0.29477124183006537, 0.296078431372549, 0.2973856209150327, 0.29934640522875816, 0.30196078431372547, 0.30392156862745096, 0.3104575163398693, 0.31437908496732025, 0.3176470588235294, 0.3196078431372549, 0.3235294117647059, 0.3281045751633987, 0.3359477124183007, 0.35228758169934643, 0.46143790849673205, 0.5908496732026144, 0.842483660130719], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PduV-EutP.gap.json b/pfam_gap_rates/PduV-EutP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2223cf0c0ee940bc247cb9f1d17dd8c3d4f5db91
--- /dev/null
+++ b/pfam_gap_rates/PduV-EutP.gap.json
@@ -0,0 +1 @@
+{"family": "PduV-EutP", "n_seqs": 165, "length": 144, "gap_rates": [0.4303030303030303, 0.20606060606060606, 0.12727272727272726, 0.11515151515151516, 0.07878787878787878, 0.06666666666666667, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.06060606060606061, 0.06666666666666667, 0.06666666666666667, 0.06060606060606061, 0.06060606060606061, 0.06666666666666667, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.05454545454545454, 0.9333333333333333, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.06060606060606061, 0.05454545454545454, 0.05454545454545454, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.04242424242424243, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.04242424242424243, 0.04242424242424243, 0.03636363636363636, 0.03636363636363636, 0.04242424242424243, 0.05454545454545454, 0.03636363636363636, 0.04242424242424243, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.6787878787878788, 0.5333333333333333, 0.08484848484848485, 0.03636363636363636, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.03636363636363636, 0.05454545454545454, 0.048484848484848485, 0.030303030303030304, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.8484848484848485, 0.04242424242424243, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.06060606060606061, 0.06060606060606061, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.06060606060606061, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.07878787878787878, 0.09696969696969697, 0.12121212121212122, 0.3696969696969697], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C25.gap.json b/pfam_gap_rates/Peptidase_C25.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aca49be0cc282fdf2f3272af3cf72f319bccdfe3
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C25.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M10.gap.json b/pfam_gap_rates/Peptidase_M10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..683c29a914ab87e9eccdf9c4b0bf407337fc6838
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M10.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M24.gap.json b/pfam_gap_rates/Peptidase_M24.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd2be741e7aa3bfe7960e563a53ec92249516d5c
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M24.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M24", "n_seqs": 5000, "length": 325, "gap_rates": [0.7978, 0.3072, 0.155, 0.1246, 0.108, 0.0982, 0.0936, 0.0892, 0.0858, 0.0838, 0.081, 0.078, 0.0734, 0.0728, 0.0722, 0.0712, 0.0704, 0.0782, 0.0766, 0.0798, 0.071, 0.0654, 0.0646, 0.9356, 0.9406, 0.946, 0.9378, 0.934, 0.0566, 0.0556, 0.053, 0.0516, 0.051, 0.0502, 0.0496, 0.0492, 0.0484, 0.0484, 0.0482, 0.0484, 0.0628, 0.0542, 0.6284, 0.1146, 0.0738, 0.0664, 0.0942, 0.0536, 0.5644, 0.5806, 0.8376, 0.8632, 0.9126, 0.948, 0.8828, 0.8498, 0.6422, 0.5722, 0.5416, 0.0486, 0.0498, 0.0486, 0.0482, 0.0576, 0.0628, 0.0638, 0.1464, 0.13, 0.0404, 0.0398, 0.0434, 0.0412, 0.0362, 0.0362, 0.0366, 0.0362, 0.0536, 0.0446, 0.0392, 0.0372, 0.9098, 0.0364, 0.036, 0.827, 0.8532, 0.8068, 0.05, 0.9182, 0.0548, 0.0482, 0.0346, 0.9212, 0.9364, 0.8934, 0.034, 0.036, 0.0352, 0.0628, 0.0358, 0.0342, 0.0324, 0.032, 0.031, 0.031, 0.0308, 0.0302, 0.03, 0.0296, 0.0324, 0.0294, 0.9284, 0.0292, 0.0294, 0.0292, 0.029, 0.0294, 0.0294, 0.0292, 0.029, 0.0288, 0.0286, 0.8464, 0.0286, 0.028, 0.0812, 0.933, 0.8894, 0.1284, 0.0956, 0.0468, 0.0394, 0.0372, 0.0354, 0.033, 0.0354, 0.0316, 0.0316, 0.032, 0.032, 0.0316, 0.0316, 0.0312, 0.031, 0.031, 0.0334, 0.0306, 0.0302, 0.0302, 0.0302, 0.031, 0.0306, 0.0322, 0.0318, 0.8786, 0.0308, 0.0332, 0.0326, 0.033, 0.033, 0.0336, 0.0334, 0.0328, 0.033, 0.0336, 0.0336, 0.0338, 0.035, 0.0346, 0.0348, 0.0344, 0.0394, 0.0782, 0.8776, 0.9236, 0.9182, 0.8728, 0.1084, 0.0464, 0.7624, 0.7736, 0.7838, 0.8058, 0.8622, 0.8672, 0.872, 0.907, 0.9234, 0.9274, 0.9216, 0.9022, 0.8708, 0.8648, 0.8542, 0.7874, 0.7764, 0.765, 0.7484, 0.5088, 0.17, 0.0504, 0.0546, 0.0412, 0.0398, 0.0396, 0.0392, 0.0392, 0.039, 0.0392, 0.0394, 0.0398, 0.8904, 0.8872, 0.0462, 0.9232, 0.0468, 0.044, 0.0442, 0.0524, 0.055, 0.9204, 0.9144, 0.7906, 0.0868, 0.0974, 0.906, 0.1028, 0.1072, 0.3774, 0.596, 0.8622, 0.9112, 0.9434, 0.9488, 0.9292, 0.888, 0.8294, 0.547, 0.4528, 0.177, 0.113, 0.9198, 0.0742, 0.057, 0.054, 0.0536, 0.0534, 0.0538, 0.0542, 0.0546, 0.0556, 0.0548, 0.0552, 0.056, 0.0576, 0.0614, 0.0614, 0.8488, 0.8498, 0.8904, 0.9438, 0.9292, 0.8892, 0.8496, 0.8472, 0.078, 0.1098, 0.114, 0.8948, 0.9444, 0.927, 0.8848, 0.5648, 0.216, 0.1596, 0.7592, 0.79, 0.8516, 0.9038, 0.934, 0.868, 0.8324, 0.7688, 0.7418, 0.1648, 0.099, 0.5512, 0.5542, 0.5644, 0.7162, 0.8154, 0.822, 0.8412, 0.8596, 0.9106, 0.9168, 0.9296, 0.936, 0.9486, 0.9386, 0.934, 0.9204, 0.9158, 0.885, 0.8492, 0.8326, 0.8174, 0.8052, 0.5688, 0.557, 0.5526, 0.5416, 0.1334, 0.6996, 0.0944, 0.095, 0.0956, 0.097, 0.0984, 0.1002, 0.1026, 0.1078, 0.118, 0.1384, 0.2392, 0.4616], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M24_C.gap.json b/pfam_gap_rates/Peptidase_M24_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9242b129837b667be2e517a52fbf584ce73c1fed
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M24_C.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M24_C", "n_seqs": 1104, "length": 65, "gap_rates": [0.5960144927536232, 0.08423913043478261, 0.028079710144927536, 0.017210144927536232, 0.012681159420289856, 0.01177536231884058, 0.007246376811594203, 0.006340579710144928, 0.006340579710144928, 0.005434782608695652, 0.004528985507246377, 0.004528985507246377, 0.004528985507246377, 0.004528985507246377, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.002717391304347826, 0.0009057971014492754, 0.0009057971014492754, 0.0009057971014492754, 0.0018115942028985507, 0.002717391304347826, 0.004528985507246377, 0.004528985507246377, 0.004528985507246377, 0.004528985507246377, 0.004528985507246377, 0.007246376811594203, 0.008152173913043478, 0.009057971014492754, 0.009963768115942028, 0.012681159420289856, 0.015398550724637682, 0.016304347826086956, 0.016304347826086956, 0.018115942028985508, 0.019021739130434784, 0.019927536231884056, 0.020833333333333332, 0.6494565217391305, 0.8242753623188406, 0.8179347826086957, 0.6077898550724637, 0.030797101449275364, 0.02355072463768116, 0.019927536231884056, 0.019927536231884056, 0.020833333333333332, 0.022644927536231884, 0.028985507246376812, 0.035326086956521736, 0.04619565217391304, 0.07246376811594203, 0.1213768115942029, 0.2463768115942029], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_S9_N.gap.json b/pfam_gap_rates/Peptidase_S9_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cd665a13dc6850dc42f1343e3638d15b19f7edb8
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_S9_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_portal_2.gap.json b/pfam_gap_rates/Phage_portal_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2207a93715dde49eb6310ed2b53da651ced486f8
--- /dev/null
+++ b/pfam_gap_rates/Phage_portal_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PhnI.gap.json b/pfam_gap_rates/PhnI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e58cefeb77efe7291a6435df4ce83d4c2ac2d89e
--- /dev/null
+++ b/pfam_gap_rates/PhnI.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Phytase.gap.json b/pfam_gap_rates/Phytase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..74d16e776db92e02bb4519b819a03b3a51e5965d
--- /dev/null
+++ b/pfam_gap_rates/Phytase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PilN.gap.json b/pfam_gap_rates/PilN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60ca8176ead1c02c7f6652c186186f30f8c1b0e3
--- /dev/null
+++ b/pfam_gap_rates/PilN.gap.json
@@ -0,0 +1 @@
+{"family": "PilN", "n_seqs": 824, "length": 117, "gap_rates": [0.6662621359223301, 0.25606796116504854, 0.1529126213592233, 0.11529126213592233, 0.0825242718446602, 0.06310679611650485, 0.05946601941747573, 0.04733009708737864, 0.03155339805825243, 0.03033980582524272, 0.02669902912621359, 0.024271844660194174, 0.015776699029126214, 0.012135922330097087, 0.012135922330097087, 0.009708737864077669, 0.00849514563106796, 0.00849514563106796, 0.00849514563106796, 0.007281553398058253, 0.9029126213592233, 0.006067961165048544, 0.0036407766990291263, 0.0036407766990291263, 0.0024271844660194173, 0.8131067961165048, 0.8616504854368932, 0.8932038834951457, 0.9053398058252428, 0.9089805825242718, 0.9150485436893204, 0.9223300970873787, 0.933252427184466, 0.9405339805825242, 0.9490291262135923, 0.9453883495145631, 0.9381067961165048, 0.9296116504854369, 0.9174757281553398, 0.9138349514563107, 0.9065533980582524, 0.8980582524271845, 0.8847087378640777, 0.8519417475728155, 0.779126213592233, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.07524271844660194, 0.07402912621359223, 0.07281553398058252, 0.0, 0.0012135922330097086, 0.0012135922330097086, 0.0036407766990291263, 0.0036407766990291263, 0.0036407766990291263, 0.0012135922330097086, 0.0, 0.0, 0.0, 0.0012135922330097086, 0.9466019417475728, 0.0012135922330097086, 0.00849514563106796, 0.00849514563106796, 0.0048543689320388345, 0.006067961165048544, 0.0048543689320388345, 0.9174757281553398, 0.9029126213592233, 0.006067961165048544, 0.007281553398058253, 0.007281553398058253, 0.010922330097087379, 0.012135922330097087, 0.013349514563106795, 0.015776699029126214, 0.01699029126213592, 0.02063106796116505, 0.024271844660194174, 0.027912621359223302, 0.8264563106796117, 0.8689320388349514, 0.933252427184466, 0.9478155339805825, 0.8883495145631068, 0.845873786407767, 0.7609223300970874, 0.41019417475728154, 0.40048543689320387, 0.3191747572815534, 0.2645631067961165, 0.11165048543689321, 0.8822815533980582, 0.9174757281553398, 0.9356796116504854, 0.9478155339805825, 0.9429611650485437, 0.9235436893203883, 0.8992718446601942, 0.8640776699029126, 0.10072815533980582, 0.10194174757281553, 0.10436893203883495, 0.10558252427184465, 0.11893203883495146, 0.13349514563106796, 0.18325242718446602, 0.25728155339805825, 0.48058252427184467, 0.9029126213592233], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Plasmodium_Vir.gap.json b/pfam_gap_rates/Plasmodium_Vir.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..16bdbe823aecc321b2cd4d602cf49447276e28f1
--- /dev/null
+++ b/pfam_gap_rates/Plasmodium_Vir.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Prim-Pol.gap.json b/pfam_gap_rates/Prim-Pol.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3dd23ca6408bf09947f6d76929c0688fb376fb9e
--- /dev/null
+++ b/pfam_gap_rates/Prim-Pol.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Proteasome.gap.json b/pfam_gap_rates/Proteasome.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d699b02a6595fa7e377648bb22aea6d178e364b4
--- /dev/null
+++ b/pfam_gap_rates/Proteasome.gap.json
@@ -0,0 +1 @@
+{"family": "Proteasome", "n_seqs": 5000, "length": 199, "gap_rates": [0.7316, 0.502, 0.2756, 0.239, 0.206, 0.1752, 0.1378, 0.1198, 0.1176, 0.1116, 0.1094, 0.1068, 0.1036, 0.1012, 0.1006, 0.1, 0.0992, 0.097, 0.096, 0.0958, 0.0962, 0.1214, 0.1184, 0.0942, 0.0938, 0.4794, 0.4562, 0.1164, 0.1142, 0.1108, 0.2876, 0.1052, 0.0928, 0.092, 0.3536, 0.2178, 0.0814, 0.0804, 0.0798, 0.0788, 0.0786, 0.0772, 0.8476, 0.0844, 0.076, 0.0762, 0.074, 0.072, 0.069, 0.0686, 0.0678, 0.0674, 0.0672, 0.0674, 0.0658, 0.066, 0.0668, 0.0662, 0.0658, 0.066, 0.0656, 0.0662, 0.0658, 0.0652, 0.065, 0.0648, 0.0664, 0.0664, 0.0656, 0.0654, 0.0652, 0.0648, 0.0652, 0.212, 0.208, 0.206, 0.195, 0.1946, 0.1944, 0.0716, 0.0746, 0.074, 0.0722, 0.5462, 0.5046, 0.4952, 0.4786, 0.3418, 0.2012, 0.2008, 0.2008, 0.0708, 0.0702, 0.0742, 0.0698, 0.0644, 0.0622, 0.0636, 0.063, 0.0638, 0.9366, 0.1402, 0.076, 0.0684, 0.0646, 0.063, 0.0622, 0.062, 0.0622, 0.0608, 0.0608, 0.0626, 0.0608, 0.0584, 0.0558, 0.0518, 0.8804, 0.091, 0.0558, 0.059, 0.3026, 0.0674, 0.064, 0.0612, 0.0626, 0.062, 0.0612, 0.0616, 0.062, 0.0622, 0.0614, 0.0614, 0.062, 0.0622, 0.062, 0.062, 0.3886, 0.831, 0.406, 0.0714, 0.0622, 0.0616, 0.0616, 0.0616, 0.0626, 0.0866, 0.063, 0.0636, 0.0654, 0.0646, 0.0648, 0.065, 0.0646, 0.065, 0.0654, 0.0664, 0.0676, 0.0702, 0.8266, 0.9274, 0.9388, 0.9146, 0.8038, 0.2128, 0.1922, 0.099, 0.0904, 0.092, 0.0928, 0.0958, 0.0932, 0.093, 0.0922, 0.0928, 0.0926, 0.0934, 0.0942, 0.0954, 0.0972, 0.099, 0.1006, 0.1042, 0.1082, 0.11, 0.1148, 0.25, 0.1858, 0.2684, 0.1414, 0.1438, 0.1464, 0.1604, 0.1786, 0.1864, 0.1964, 0.2078, 0.2416, 0.3422, 0.5508], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/QRPTase_N.gap.json b/pfam_gap_rates/QRPTase_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9c2c9149621318e8fd0c56e174c409c2e9b23fbb
--- /dev/null
+++ b/pfam_gap_rates/QRPTase_N.gap.json
@@ -0,0 +1 @@
+{"family": "QRPTase_N", "n_seqs": 1860, "length": 96, "gap_rates": [0.6790322580645162, 0.35698924731182796, 0.2064516129032258, 0.10967741935483871, 0.1043010752688172, 0.10268817204301076, 0.10268817204301076, 0.1, 0.38763440860215054, 0.21021505376344085, 0.08655913978494624, 0.07795698924731183, 0.07150537634408602, 0.06075268817204301, 0.0553763440860215, 0.0543010752688172, 0.0478494623655914, 0.038172043010752686, 0.035483870967741936, 0.031720430107526884, 0.030107526881720432, 0.030107526881720432, 0.02956989247311828, 0.02795698924731183, 0.023118279569892472, 0.01827956989247312, 0.014516129032258065, 0.011827956989247311, 0.01129032258064516, 0.01129032258064516, 0.01129032258064516, 0.01129032258064516, 0.010752688172043012, 0.01021505376344086, 0.00967741935483871, 0.00913978494623656, 0.008602150537634409, 0.00913978494623656, 0.005913978494623656, 0.005376344086021506, 0.005376344086021506, 0.007526881720430108, 0.006989247311827957, 0.2779569892473118, 0.9198924731182796, 0.9419354838709677, 0.8768817204301075, 0.2478494623655914, 0.011827956989247311, 0.01129032258064516, 0.006989247311827957, 0.005913978494623656, 0.01989247311827957, 0.005376344086021506, 0.005913978494623656, 0.03602150537634408, 0.002150537634408602, 0.002150537634408602, 0.002150537634408602, 0.002150537634408602, 0.002150537634408602, 0.002688172043010753, 0.0032258064516129032, 0.0016129032258064516, 0.002150537634408602, 0.004838709677419355, 0.9413978494623656, 0.9489247311827957, 0.9370967741935484, 0.0032258064516129032, 0.0032258064516129032, 0.002688172043010753, 0.002688172043010753, 0.0032258064516129032, 0.0032258064516129032, 0.0032258064516129032, 0.003763440860215054, 0.004838709677419355, 0.004838709677419355, 0.004838709677419355, 0.005376344086021506, 0.013440860215053764, 0.013978494623655914, 0.014516129032258065, 0.015591397849462365, 0.016129032258064516, 0.017204301075268817, 0.017741935483870968, 0.02043010752688172, 0.020967741935483872, 0.02204301075268817, 0.023118279569892472, 0.026881720430107527, 0.03924731182795699, 0.05053763440860215, 0.0956989247311828], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RFC1.gap.json b/pfam_gap_rates/RFC1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..77b72020c22df77eb1c290b81fe9319c0a799770
--- /dev/null
+++ b/pfam_gap_rates/RFC1.gap.json
@@ -0,0 +1 @@
+{"family": "RFC1", "n_seqs": 366, "length": 173, "gap_rates": [0.19672131147540983, 0.10382513661202186, 0.08743169398907104, 0.08469945355191257, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.07650273224043716, 0.07650273224043716, 0.07377049180327869, 0.07650273224043716, 0.07923497267759563, 0.08743169398907104, 0.6120218579234973, 0.06830601092896176, 0.06284153005464481, 0.06284153005464481, 0.060109289617486336, 0.060109289617486336, 0.060109289617486336, 0.060109289617486336, 0.060109289617486336, 0.05737704918032787, 0.08469945355191257, 0.08743169398907104, 0.06284153005464481, 0.060109289617486336, 0.060109289617486336, 0.05737704918032787, 0.0546448087431694, 0.0546448087431694, 0.07650273224043716, 0.06557377049180328, 0.06284153005464481, 0.06557377049180328, 0.060109289617486336, 0.060109289617486336, 0.07103825136612021, 0.14207650273224043, 0.09289617486338798, 0.10382513661202186, 0.1092896174863388, 0.7021857923497268, 0.7377049180327869, 0.9234972677595629, 0.9398907103825137, 0.8524590163934426, 0.7076502732240437, 0.6530054644808743, 0.1092896174863388, 0.05737704918032787, 0.0546448087431694, 0.0546448087431694, 0.0546448087431694, 0.907103825136612, 0.907103825136612, 0.8989071038251366, 0.05737704918032787, 0.060109289617486336, 0.06830601092896176, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.06284153005464481, 0.05737704918032787, 0.05191256830601093, 0.05191256830601093, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.060109289617486336, 0.060109289617486336, 0.060109289617486336, 0.06284153005464481, 0.07103825136612021, 0.06830601092896176, 0.06284153005464481, 0.06830601092896176, 0.07103825136612021, 0.8415300546448088, 0.8306010928961749, 0.06284153005464481, 0.05737704918032787, 0.0546448087431694, 0.0546448087431694, 0.05737704918032787, 0.0546448087431694, 0.05191256830601093, 0.0546448087431694, 0.05191256830601093, 0.05191256830601093, 0.05191256830601093, 0.05191256830601093, 0.04644808743169399, 0.04644808743169399, 0.04644808743169399, 0.04644808743169399, 0.04918032786885246, 0.04644808743169399, 0.04918032786885246, 0.060109289617486336, 0.0546448087431694, 0.05737704918032787, 0.0546448087431694, 0.0546448087431694, 0.0546448087431694, 0.0546448087431694, 0.0546448087431694, 0.2185792349726776, 0.1885245901639344, 0.17759562841530055, 0.07650273224043716, 0.06557377049180328, 0.8879781420765027, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06284153005464481, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.07103825136612021, 0.07377049180327869, 0.07377049180327869, 0.9016393442622951, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.1366120218579235, 0.15027322404371585, 0.12295081967213115, 0.8688524590163934, 0.8224043715846995, 0.6092896174863388, 0.9453551912568307, 0.226775956284153, 0.14754098360655737, 0.15846994535519127, 0.14207650273224043, 0.12568306010928962, 0.12568306010928962, 0.226775956284153, 0.20491803278688525, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09836065573770492, 0.10109289617486339, 0.10382513661202186, 0.10382513661202186, 0.10655737704918032, 0.10655737704918032, 0.10655737704918032, 0.11202185792349727, 0.12295081967213115, 0.14754098360655737, 0.3907103825136612], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RGS-like.gap.json b/pfam_gap_rates/RGS-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..136a7df9ce4d9eb2826d928f636bada122bc63f3
--- /dev/null
+++ b/pfam_gap_rates/RGS-like.gap.json
@@ -0,0 +1 @@
+{"family": "RGS-like", "n_seqs": 106, "length": 208, "gap_rates": [0.6886792452830188, 0.5283018867924528, 0.20754716981132076, 0.1792452830188679, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16981132075471697, 0.16037735849056603, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.9433962264150944, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.14150943396226415, 0.16981132075471697, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.8301886792452831, 0.7924528301886793, 0.20754716981132076, 0.20754716981132076, 0.2169811320754717, 0.2169811320754717, 0.2169811320754717, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.2169811320754717, 0.2169811320754717, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.19811320754716982, 0.19811320754716982, 0.18867924528301888, 0.18867924528301888, 0.16981132075471697, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.8867924528301887, 0.16037735849056603, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16037735849056603, 0.16037735849056603, 0.8584905660377359, 0.8962264150943396, 0.8962264150943396, 0.9433962264150944, 0.8962264150943396, 0.8773584905660378, 0.7169811320754716, 0.2358490566037736, 0.33962264150943394, 0.330188679245283, 0.25471698113207547, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16037735849056603, 0.16037735849056603, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.18867924528301888, 0.16037735849056603, 0.16981132075471697, 0.20754716981132076, 0.18867924528301888, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.20754716981132076, 0.20754716981132076, 0.24528301886792453, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.37735849056603776, 0.37735849056603776, 0.20754716981132076, 0.22641509433962265, 0.20754716981132076, 0.20754716981132076, 0.19811320754716982, 0.19811320754716982, 0.6981132075471698, 0.8773584905660378, 0.6981132075471698, 0.6981132075471698, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.2169811320754717, 0.22641509433962265, 0.22641509433962265, 0.9433962264150944, 0.24528301886792453, 0.2358490566037736, 0.2358490566037736, 0.2358490566037736, 0.42452830188679247, 0.42452830188679247, 0.44339622641509435, 0.29245283018867924, 0.29245283018867924, 0.37735849056603776, 0.3113207547169811, 0.8867924528301887, 0.9433962264150944, 0.9433962264150944, 0.8301886792452831, 0.3018867924528302, 0.3018867924528302, 0.3018867924528302, 0.29245283018867924, 0.2641509433962264, 0.2641509433962264, 0.2830188679245283, 0.2830188679245283, 0.2830188679245283, 0.2830188679245283, 0.29245283018867924, 0.29245283018867924, 0.29245283018867924, 0.29245283018867924, 0.29245283018867924, 0.29245283018867924, 0.29245283018867924, 0.32075471698113206, 0.33962264150943394, 0.4811320754716981, 0.5094339622641509], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RHH_3.gap.json b/pfam_gap_rates/RHH_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..87b5a62e38ed6a7146cc2b438c8f108e4b297e00
--- /dev/null
+++ b/pfam_gap_rates/RHH_3.gap.json
@@ -0,0 +1 @@
+{"family": "RHH_3", "n_seqs": 129, "length": 44, "gap_rates": [0.751937984496124, 0.5658914728682171, 0.43410852713178294, 0.31007751937984496, 0.23255813953488372, 0.14728682170542637, 0.05426356589147287, 0.03875968992248062, 0.031007751937984496, 0.023255813953488372, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007751937984496124, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007751937984496124, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.05426356589147287, 0.06976744186046512, 0.10077519379844961, 0.13953488372093023, 0.24806201550387597, 0.40310077519379844, 0.5658914728682171, 0.7906976744186046], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RHSP.gap.json b/pfam_gap_rates/RHSP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..326f882af879272297b424e67d90e14924eeca6c
--- /dev/null
+++ b/pfam_gap_rates/RHSP.gap.json
@@ -0,0 +1 @@
+{"family": "RHSP", "n_seqs": 637, "length": 486, "gap_rates": [0.28885400313971743, 0.27629513343799056, 0.27629513343799056, 0.27629513343799056, 0.27472527472527475, 0.271585557299843, 0.271585557299843, 0.271585557299843, 0.271585557299843, 0.271585557299843, 0.271585557299843, 0.27001569858712715, 0.27001569858712715, 0.9324960753532182, 0.9230769230769231, 0.27001569858712715, 0.2668759811616955, 0.9215070643642073, 0.9199372056514914, 0.2668759811616955, 0.2668759811616955, 0.2653061224489796, 0.2668759811616955, 0.2653061224489796, 0.2653061224489796, 0.260596546310832, 0.24803767660910517, 0.24332810047095763, 0.23861852433281006, 0.23861852433281006, 0.7786499215070644, 0.7864992150706437, 0.7692307692307693, 0.23390894819466249, 0.23390894819466249, 0.23390894819466249, 0.9199372056514914, 0.9277864992150706, 0.9293563579277865, 0.9262166405023547, 0.9199372056514914, 0.24960753532182103, 0.2370486656200942, 0.23390894819466249, 0.23390894819466249, 0.23390894819466249, 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\ No newline at end of file
diff --git a/pfam_gap_rates/RPAP2_Rtr1.gap.json b/pfam_gap_rates/RPAP2_Rtr1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dc35cefd525d36a944d8dbfc1e8a94ff6619c18f
--- /dev/null
+++ b/pfam_gap_rates/RPAP2_Rtr1.gap.json
@@ -0,0 +1 @@
+{"family": "RPAP2_Rtr1", "n_seqs": 265, "length": 93, "gap_rates": [0.769811320754717, 0.2, 0.05660377358490566, 0.04150943396226415, 0.03773584905660377, 0.033962264150943396, 0.03018867924528302, 0.026415094339622643, 0.026415094339622643, 0.022641509433962263, 0.022641509433962263, 0.018867924528301886, 0.011320754716981131, 0.011320754716981131, 0.011320754716981131, 0.011320754716981131, 0.011320754716981131, 0.01509433962264151, 0.011320754716981131, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.01509433962264151, 0.01509433962264151, 0.018867924528301886, 0.018867924528301886, 0.03018867924528302, 0.09433962264150944, 0.18490566037735848, 0.8452830188679246, 0.9018867924528302, 0.9169811320754717, 0.939622641509434, 0.9433962264150944, 0.939622641509434, 0.9283018867924528, 0.909433962264151, 0.8905660377358491, 0.7924528301886793, 0.5773584905660377, 0.22641509433962265, 0.10566037735849057, 0.04905660377358491, 0.03773584905660377, 0.03773584905660377, 0.033962264150943396, 0.04905660377358491, 0.03773584905660377, 0.8603773584905661, 0.9056603773584906, 0.9471698113207547, 0.909433962264151, 0.8679245283018868, 0.8150943396226416, 0.1660377358490566, 0.10943396226415095, 0.06792452830188679, 0.05660377358490566, 0.05660377358490566, 0.045283018867924525, 0.045283018867924525, 0.04150943396226415, 0.045283018867924525, 0.04905660377358491, 0.03773584905660377, 0.045283018867924525, 0.9320754716981132, 0.8754716981132076, 0.033962264150943396, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.04150943396226415, 0.04150943396226415, 0.04150943396226415, 0.04150943396226415, 0.04150943396226415, 0.045283018867924525, 0.052830188679245285, 0.05660377358490566, 0.06415094339622641, 0.06792452830188679, 0.08679245283018867, 0.08679245283018867, 0.15849056603773584, 0.18490566037735848, 0.19245283018867926, 0.6490566037735849], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RVT_1.gap.json b/pfam_gap_rates/RVT_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec48ea3066945d770008bbc99fd7fb36584fcaa1
--- /dev/null
+++ b/pfam_gap_rates/RVT_1.gap.json
@@ -0,0 +1 @@
+{"family": "RVT_1", "n_seqs": 5000, "length": 277, "gap_rates": [0.7398, 0.6214, 0.5512, 0.5398, 0.501, 0.8154, 0.8462, 0.9326, 0.826, 0.8092, 0.736, 0.4666, 0.4468, 0.4412, 0.4364, 0.4342, 0.8484, 0.4328, 0.6514, 0.648, 0.6436, 0.6384, 0.565, 0.4132, 0.4086, 0.405, 0.404, 0.4004, 0.3982, 0.3974, 0.3954, 0.3938, 0.392, 0.3908, 0.6322, 0.63, 0.6266, 0.622, 0.6206, 0.6456, 0.8926, 0.8852, 0.6308, 0.6164, 0.5986, 0.3768, 0.3724, 0.3702, 0.3642, 0.3602, 0.3572, 0.355, 0.3534, 0.3542, 0.353, 0.3518, 0.579, 0.5774, 0.5752, 0.5946, 0.5946, 0.6052, 0.598, 0.7332, 0.9034, 0.742, 0.698, 0.5908, 0.596, 0.5796, 0.564, 0.5584, 0.5466, 0.4514, 0.4012, 0.327, 0.3004, 0.2786, 0.2722, 0.2696, 0.2642, 0.2544, 0.2498, 0.2464, 0.2424, 0.2394, 0.239, 0.2358, 0.2342, 0.2314, 0.2302, 0.2316, 0.2314, 0.2328, 0.2358, 0.237, 0.2368, 0.2372, 0.2384, 0.2376, 0.2368, 0.238, 0.2374, 0.235, 0.2324, 0.2294, 0.2504, 0.2386, 0.233, 0.2266, 0.5496, 0.5426, 0.5686, 0.5574, 0.5502, 0.545, 0.5398, 0.5392, 0.5398, 0.5374, 0.5362, 0.6468, 0.6462, 0.6434, 0.6354, 0.6056, 0.5958, 0.5866, 0.5754, 0.567, 0.9486, 0.5616, 0.5446, 0.592, 0.6248, 0.6274, 0.1992, 0.1938, 0.1866, 0.1822, 0.178, 0.1744, 0.1708, 0.1676, 0.1606, 0.1608, 0.159, 0.159, 0.1604, 0.1606, 0.16, 0.1588, 0.1588, 0.1594, 0.1574, 0.1574, 0.1582, 0.1606, 0.16, 0.1576, 0.1574, 0.157, 0.1592, 0.161, 0.164, 0.1662, 0.1674, 0.1708, 0.2162, 0.5382, 0.6954, 0.7704, 0.807, 0.8232, 0.8704, 0.9006, 0.9136, 0.9374, 0.9492, 0.9338, 0.9076, 0.882, 0.8442, 0.8156, 0.7992, 0.755, 0.6632, 0.5334, 0.379, 0.2252, 0.1682, 0.1616, 0.159, 0.1578, 0.1584, 0.159, 0.1594, 0.1602, 0.1626, 0.1656, 0.166, 0.1686, 0.1728, 0.1756, 0.9418, 0.1964, 0.1926, 0.1888, 0.8442, 0.8624, 0.8878, 0.8696, 0.8538, 0.83, 0.196, 0.1986, 0.2002, 0.201, 0.2038, 0.206, 0.2086, 0.2106, 0.215, 0.22, 0.2226, 0.2252, 0.2286, 0.232, 0.9392, 0.2368, 0.2384, 0.241, 0.2436, 0.246, 0.251, 0.2564, 0.2586, 0.2602, 0.2648, 0.2682, 0.273, 0.28, 0.605, 0.7204, 0.7646, 0.7736, 0.7918, 0.81, 0.8236, 0.8604, 0.9156, 0.9362, 0.8884, 0.8482, 0.816, 0.8042, 0.784, 0.768, 0.762, 0.7424, 0.76, 0.8118, 0.918, 0.8696, 0.779, 0.6898, 0.4398, 0.4014, 0.4018, 0.4026, 0.4058, 0.4106, 0.4168, 0.4232, 0.451, 0.562, 0.7706], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RapA_C.gap.json b/pfam_gap_rates/RapA_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ffadc83d9a76ba3cf4d9829cda04e30259e9123d
--- /dev/null
+++ b/pfam_gap_rates/RapA_C.gap.json
@@ -0,0 +1 @@
+{"family": "RapA_C", "n_seqs": 169, "length": 369, "gap_rates": [0.3076923076923077, 0.10650887573964497, 0.10650887573964497, 0.10650887573964497, 0.10059171597633136, 0.10059171597633136, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.10059171597633136, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.09467455621301775, 0.08875739644970414, 0.08875739644970414, 0.08875739644970414, 0.08875739644970414, 0.08875739644970414, 0.08875739644970414, 0.08875739644970414, 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\ No newline at end of file
diff --git a/pfam_gap_rates/RbpA.gap.json b/pfam_gap_rates/RbpA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..95cf2830d06c3f0de091ed839924b2dc8d06f609
--- /dev/null
+++ b/pfam_gap_rates/RbpA.gap.json
@@ -0,0 +1 @@
+{"family": "RbpA", "n_seqs": 231, "length": 110, "gap_rates": [0.23809523809523808, 0.12554112554112554, 0.11255411255411256, 0.11255411255411256, 0.11255411255411256, 0.09956709956709957, 0.09523809523809523, 0.08658008658008658, 0.08658008658008658, 0.08658008658008658, 0.06926406926406926, 0.05627705627705628, 0.03463203463203463, 0.025974025974025976, 0.025974025974025976, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.021645021645021644, 0.017316017316017316, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.0, 0.0, 0.0, 0.0, 0.8658008658008658, 0.922077922077922, 0.8658008658008658, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.4069264069264069, 0.0, 0.0, 0.0, 0.004329004329004329, 0.0, 0.0, 0.0, 0.9393939393939394, 0.36363636363636365, 0.0, 0.0, 0.0, 0.004329004329004329, 0.025974025974025976, 0.47619047619047616, 0.8874458874458875, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.06493506493506493], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RcbX.gap.json b/pfam_gap_rates/RcbX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..38628b5b0eedfb4da23abddfb4145abb6b8e842f
--- /dev/null
+++ b/pfam_gap_rates/RcbX.gap.json
@@ -0,0 +1 @@
+{"family": "RcbX", "n_seqs": 146, "length": 119, "gap_rates": [0.6712328767123288, 0.6712328767123288, 0.6712328767123288, 0.6712328767123288, 0.6643835616438356, 0.6643835616438356, 0.6575342465753424, 0.5616438356164384, 0.3356164383561644, 0.2876712328767123, 0.2534246575342466, 0.19863013698630136, 0.1232876712328767, 0.0958904109589041, 0.0958904109589041, 0.07534246575342465, 0.07534246575342465, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.0684931506849315, 0.0547945205479452, 0.0410958904109589, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0547945205479452, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.0273972602739726, 0.0273972602739726, 0.03424657534246575, 0.03424657534246575, 0.0273972602739726, 0.7808219178082192, 0.9383561643835616, 0.7945205479452054, 0.773972602739726, 0.03424657534246575, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.04794520547945205, 0.04794520547945205, 0.0547945205479452, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.06164383561643835, 0.0547945205479452, 0.04794520547945205, 0.0547945205479452, 0.678082191780822, 0.636986301369863, 0.06164383561643835, 0.06164383561643835, 0.9452054794520548, 0.06164383561643835, 0.8972602739726028, 0.06164383561643835, 0.08904109589041095, 0.06164383561643835, 0.07534246575342465, 0.07534246575342465, 0.07534246575342465, 0.07534246575342465, 0.0684931506849315, 0.0684931506849315, 0.0684931506849315, 0.0684931506849315, 0.0684931506849315, 0.0684931506849315, 0.0684931506849315, 0.0684931506849315, 0.0684931506849315, 0.07534246575342465, 0.10273972602739725, 0.1232876712328767, 0.15753424657534246, 0.2465753424657534, 0.6438356164383562, 0.7054794520547946], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RecO_N.gap.json b/pfam_gap_rates/RecO_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ab4daf1b511af073df9a78e51c7e19b7cd69a473
--- /dev/null
+++ b/pfam_gap_rates/RecO_N.gap.json
@@ -0,0 +1 @@
+{"family": "RecO_N", "n_seqs": 2029, "length": 83, "gap_rates": [0.40611138491867915, 0.6343026121241991, 0.9024149827501232, 0.33316904879250864, 0.24544110399211433, 0.1409561360275998, 0.07540660423854115, 0.0527353376047314, 0.040413997042878264, 0.03844258255298177, 0.03302119270576639, 0.025135534746180386, 0.019714144898965006, 0.018235584031542632, 0.016264169541646133, 0.012814194184327254, 0.012814194184327254, 0.01232134056185313, 0.01232134056185313, 0.01232134056185313, 0.01232134056185313, 0.011828486939379004, 0.011335633316904879, 0.009364218827008379, 0.006899950714637753, 0.004435682602267127, 0.004435682602267127, 0.004435682602267127, 0.0049285362247412515, 0.005421389847215377, 0.03893543617545589, 0.006899950714637753, 0.004435682602267127, 0.004435682602267127, 0.004435682602267127, 0.003942828979793002, 0.0024642681123706258, 0.002957121734844751, 0.004435682602267127, 0.004435682602267127, 0.004435682602267127, 0.07836372597338591, 0.08674223755544604, 0.036471168063085264, 0.02168555938886151, 0.056185312962050274, 0.04189255791030064, 0.010842779694430755, 0.010349926071956629, 0.010842779694430755, 0.9305076392311483, 0.020206998521439132, 0.009857072449482503, 0.006899950714637753, 0.006899950714637753, 0.006407097092163627, 0.006899950714637753, 0.006899950714637753, 0.005914243469689502, 0.005914243469689502, 0.006407097092163627, 0.006899950714637753, 0.007392804337111878, 0.009364218827008379, 0.7136520453425332, 0.6007885657959586, 0.02858551010349926, 0.02661409561360276, 0.032528339083292265, 0.04238541153277477, 0.0527353376047314, 0.0586495810744209, 0.06554953178905865, 0.07984228684080828, 0.09216362740266142, 0.11779201577131591, 0.18137013307047806, 0.17299162148841793, 0.22375554460325284, 0.3026121241991129, 0.3716116313454904, 0.519960571710202, 0.69295219319862], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Regulator_TrmB.gap.json b/pfam_gap_rates/Regulator_TrmB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..31af55fed747eecedfdbe94267ac9211c7816fb6
--- /dev/null
+++ b/pfam_gap_rates/Regulator_TrmB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Rep_fac-A_C.gap.json b/pfam_gap_rates/Rep_fac-A_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a34b013dd3ca0a11ec9d93f9481d25f03f984f00
--- /dev/null
+++ b/pfam_gap_rates/Rep_fac-A_C.gap.json
@@ -0,0 +1 @@
+{"family": "Rep_fac-A_C", "n_seqs": 712, "length": 159, "gap_rates": [0.43258426966292135, 0.3342696629213483, 0.27808988764044945, 0.23876404494382023, 0.20646067415730338, 0.16151685393258428, 0.15308988764044945, 0.14185393258426968, 0.13904494382022473, 0.13623595505617977, 0.13342696629213482, 0.949438202247191, 0.10955056179775281, 0.10393258426966293, 0.09269662921348315, 0.8019662921348315, 0.0702247191011236, 0.054775280898876406, 0.05196629213483146, 0.05056179775280899, 0.04915730337078652, 0.047752808988764044, 0.046348314606741575, 0.046348314606741575, 0.46769662921348315, 0.449438202247191, 0.8398876404494382, 0.8539325842696629, 0.848314606741573, 0.8370786516853933, 0.06179775280898876, 0.0449438202247191, 0.0449438202247191, 0.04915730337078652, 0.04915730337078652, 0.04915730337078652, 0.06320224719101124, 0.05056179775280899, 0.05758426966292135, 0.9283707865168539, 0.1306179775280899, 0.14325842696629212, 0.09410112359550561, 0.13904494382022473, 0.9438202247191011, 0.05337078651685393, 0.04353932584269663, 0.03932584269662921, 0.05898876404494382, 0.05196629213483146, 0.04353932584269663, 0.042134831460674156, 0.042134831460674156, 0.03932584269662921, 0.1348314606741573, 0.11797752808988764, 0.042134831460674156, 0.037921348314606744, 0.042134831460674156, 0.03932584269662921, 0.03932584269662921, 0.03651685393258427, 0.0351123595505618, 0.033707865168539325, 0.0351123595505618, 0.03932584269662921, 0.042134831460674156, 0.042134831460674156, 0.04353932584269663, 0.0449438202247191, 0.04353932584269663, 0.04353932584269663, 0.03932584269662921, 0.03932584269662921, 0.04073033707865169, 0.042134831460674156, 0.042134831460674156, 0.04073033707865169, 0.03932584269662921, 0.03932584269662921, 0.0449438202247191, 0.042134831460674156, 0.03932584269662921, 0.042134831460674156, 0.04073033707865169, 0.03932584269662921, 0.03932584269662921, 0.0449438202247191, 0.9382022471910112, 0.0449438202247191, 0.0449438202247191, 0.04915730337078652, 0.05056179775280899, 0.05056179775280899, 0.05056179775280899, 0.05196629213483146, 0.05337078651685393, 0.056179775280898875, 0.06320224719101124, 0.0702247191011236, 0.08146067415730338, 0.7654494382022472, 0.9283707865168539, 0.9002808988764045, 0.6615168539325843, 0.10674157303370786, 0.11235955056179775, 0.11657303370786516, 0.11376404494382023, 0.11938202247191011, 0.1306179775280899, 0.12640449438202248, 0.13342696629213482, 0.14606741573033707, 0.14606741573033707, 0.14185393258426968, 0.14185393258426968, 0.13623595505617977, 0.14185393258426968, 0.1446629213483146, 0.14185393258426968, 0.1446629213483146, 0.1446629213483146, 0.14606741573033707, 0.1502808988764045, 0.15168539325842698, 0.15589887640449437, 0.16151685393258428, 0.17837078651685392, 0.1896067415730337, 0.19803370786516855, 0.20646067415730338, 0.22331460674157302, 0.22893258426966293, 0.23314606741573032, 0.25842696629213485, 0.25842696629213485, 0.2696629213483146, 0.273876404494382, 0.28230337078651685, 0.29353932584269665, 0.300561797752809, 0.3061797752808989, 0.31320224719101125, 0.31320224719101125, 0.32303370786516855, 0.32724719101123595, 0.33146067415730335, 0.33707865168539325, 0.3441011235955056, 0.37640449438202245, 0.3848314606741573, 0.398876404494382, 0.41292134831460675, 0.4297752808988764, 0.44662921348314605, 0.4845505617977528, 0.5224719101123596, 0.6362359550561798], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rep_fac_C.gap.json b/pfam_gap_rates/Rep_fac_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a34cd2348bea3f5bf8d43ac27e733b8f7b869b19
--- /dev/null
+++ b/pfam_gap_rates/Rep_fac_C.gap.json
@@ -0,0 +1 @@
+{"family": "Rep_fac_C", "n_seqs": 1121, "length": 93, "gap_rates": [0.39696699375557537, 0.18911685994647637, 0.1534344335414808, 0.12578055307760927, 0.11061552185548618, 0.1016949152542373, 0.09099018733273863, 0.08385370205173952, 0.0767172167707404, 0.07314897413024085, 0.07225691347011597, 0.0695807314897413, 0.06779661016949153, 0.0767172167707404, 0.05530776092774309, 0.9045495093666369, 0.9223907225691347, 0.9134701159678859, 0.8171275646743978, 0.03389830508474576, 0.02408563782337199, 0.019625334522747548, 0.01784121320249777, 0.016057091882247992, 0.01784121320249777, 0.016057091882247992, 0.015165031222123104, 0.01159678858162355, 0.008920606601248885, 0.042818911685994644, 0.5664585191793042, 0.014272970561998216, 0.013380909901873328, 0.01159678858162355, 0.010704727921498661, 0.01159678858162355, 0.006244424620874219, 0.007136485280999108, 0.007136485280999108, 0.006244424620874219, 0.006244424620874219, 0.006244424620874219, 0.007136485280999108, 0.007136485280999108, 0.006244424620874219, 0.007136485280999108, 0.003568242640499554, 0.0044603033006244425, 0.0044603033006244425, 0.0044603033006244425, 0.0053523639607493305, 0.008028545941123996, 0.009812667261373774, 0.1462979482604817, 0.9188224799286352, 0.41837644959857273, 0.0695807314897413, 0.036574487065120426, 0.030330062444246207, 0.02408563782337199, 0.0231935771632471, 0.02230151650312221, 0.012488849241748439, 0.012488849241748439, 0.012488849241748439, 0.012488849241748439, 0.012488849241748439, 0.014272970561998216, 0.019625334522747548, 0.01784121320249777, 0.01784121320249777, 0.020517395182872437, 0.021409455842997322, 0.021409455842997322, 0.0231935771632471, 0.024977698483496878, 0.026761819803746655, 0.027653880463871544, 0.028545941123996433, 0.027653880463871544, 0.030330062444246207, 0.030330062444246207, 0.030330062444246207, 0.031222123104371096, 0.031222123104371096, 0.03746654772524532, 0.04014272970561998, 0.04460303300624442, 0.056199821587867974, 0.0704727921498662, 0.12310437109723461, 0.22390722569134702, 0.5887600356824264], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Reprolysin.gap.json b/pfam_gap_rates/Reprolysin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..510984e81e550cdbcc1bb395c666f01afba96828
--- /dev/null
+++ b/pfam_gap_rates/Reprolysin.gap.json
@@ -0,0 +1 @@
+{"family": "Reprolysin", "n_seqs": 1224, "length": 240, "gap_rates": [0.548202614379085, 0.45669934640522875, 0.35049019607843135, 0.3423202614379085, 0.3349673202614379, 0.33169934640522875, 0.3284313725490196, 0.31699346405228757, 0.31290849673202614, 0.3006535947712418, 0.29983660130718953, 0.2965686274509804, 0.2908496732026144, 0.28921568627450983, 0.2826797385620915, 0.2826797385620915, 0.2761437908496732, 0.2769607843137255, 0.4738562091503268, 0.44199346405228757, 0.35294117647058826, 0.3284313725490196, 0.3112745098039216, 0.2900326797385621, 0.27941176470588236, 0.26062091503267976, 0.25163398692810457, 0.24591503267973855, 0.24428104575163398, 0.24019607843137256, 0.2361111111111111, 0.238562091503268, 0.23937908496732027, 0.24101307189542484, 0.23447712418300654, 0.23202614379084968, 0.2222222222222222, 0.21568627450980393, 0.21405228758169934, 0.21160130718954248, 0.2099673202614379, 0.6977124183006536, 0.920751633986928, 0.9125816993464052, 0.6446078431372549, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Resolvase.gap.json b/pfam_gap_rates/Resolvase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c19b0fc8d226cecfc69d3174a63ffff1fbfb025d
--- /dev/null
+++ b/pfam_gap_rates/Resolvase.gap.json
@@ -0,0 +1 @@
+{"family": "Resolvase", "n_seqs": 5000, "length": 171, "gap_rates": [0.679, 0.2178, 0.1244, 0.1154, 0.1066, 0.1046, 0.1012, 0.0994, 0.0992, 0.0982, 0.0962, 0.5848, 0.8648, 0.9474, 0.7596, 0.558, 0.0926, 0.0996, 0.3382, 0.8862, 0.9376, 0.8414, 0.3238, 0.0838, 0.0812, 0.0784, 0.0766, 0.084, 0.08, 0.078, 0.0752, 0.0752, 0.075, 0.0754, 0.0752, 0.1034, 0.0818, 0.0816, 0.9346, 0.9456, 0.815, 0.3008, 0.2716, 0.2038, 0.8702, 0.0788, 0.36, 0.2938, 0.9376, 0.2806, 0.053, 0.0514, 0.0496, 0.0504, 0.4794, 0.06, 0.0548, 0.0522, 0.0522, 0.0528, 0.9422, 0.0668, 0.0522, 0.7448, 0.0504, 0.0448, 0.0438, 0.0436, 0.0434, 0.0426, 0.0354, 0.0342, 0.034, 0.035, 0.0348, 0.0352, 0.0352, 0.3294, 0.3134, 0.0472, 0.949, 0.9274, 0.0418, 0.0352, 0.0348, 0.0346, 0.0342, 0.0338, 0.0342, 0.0346, 0.0356, 0.037, 0.0374, 0.0372, 0.038, 0.0402, 0.0418, 0.0406, 0.0412, 0.0438, 0.0432, 0.0584, 0.0564, 0.103, 0.0914, 0.0538, 0.0522, 0.8234, 0.0474, 0.0476, 0.0476, 0.0498, 0.0496, 0.0472, 0.0462, 0.046, 0.0464, 0.0478, 0.0488, 0.0666, 0.1984, 0.8876, 0.9258, 0.8192, 0.108, 0.0952, 0.0914, 0.9286, 0.9346, 0.926, 0.1308, 0.0804, 0.0754, 0.0774, 0.9124, 0.085, 0.0768, 0.0708, 0.0696, 0.0696, 0.0702, 0.0704, 0.0714, 0.0728, 0.074, 0.0746, 0.076, 0.0774, 0.0782, 0.0798, 0.0824, 0.0844, 0.0856, 0.0898, 0.0906, 0.0938, 0.0954, 0.1032, 0.1094, 0.1146, 0.1222, 0.1328, 0.1416, 0.1524, 0.1644, 0.1782, 0.1988, 0.2198, 0.241, 0.4064, 0.7964], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Response_reg.gap.json b/pfam_gap_rates/Response_reg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49c96f732eb5269019ba8e5387b056a9602280dc
--- /dev/null
+++ b/pfam_gap_rates/Response_reg.gap.json
@@ -0,0 +1 @@
+{"family": "Response_reg", "n_seqs": 5000, "length": 123, "gap_rates": [0.2056, 0.0516, 0.0414, 0.0368, 0.035, 0.0336, 0.032, 0.0312, 0.0306, 0.0278, 0.0264, 0.0254, 0.0246, 0.023, 0.0224, 0.0208, 0.0204, 0.02, 0.0194, 0.9218, 0.7774, 0.0588, 0.0234, 0.0186, 0.0182, 0.7168, 0.02, 0.0148, 0.0166, 0.0148, 0.0132, 0.0126, 0.0124, 0.0116, 0.0114, 0.011, 0.0112, 0.011, 0.0112, 0.0134, 0.0128, 0.0116, 0.0194, 0.0208, 0.0234, 0.8824, 0.9448, 0.9328, 0.8204, 0.011, 0.0092, 0.0082, 0.0076, 0.0074, 0.0064, 0.0064, 0.0064, 0.0066, 0.006, 0.0062, 0.007, 0.9402, 0.0084, 0.0078, 0.0088, 0.0078, 0.0074, 0.0072, 0.0068, 0.0066, 0.007, 0.007, 0.0078, 0.0098, 0.0164, 0.0166, 0.6776, 0.9392, 0.914, 0.6452, 0.1854, 0.0326, 0.017, 0.0108, 0.0102, 0.0106, 0.0116, 0.0118, 0.0112, 0.0142, 0.0178, 0.0174, 0.0234, 0.0904, 0.078, 0.0328, 0.0276, 0.0268, 0.0264, 0.027, 0.0294, 0.03, 0.0302, 0.0312, 0.0322, 0.0326, 0.0302, 0.0292, 0.0304, 0.0326, 0.0338, 0.0356, 0.063, 0.0622, 0.0712, 0.0786, 0.089, 0.0982, 0.1178, 0.1516, 0.2066, 0.3072, 0.8316], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rhamnogal_lyase.gap.json b/pfam_gap_rates/Rhamnogal_lyase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..efc52db5c85becc9ca7443c22096d5cbf832d3a4
--- /dev/null
+++ b/pfam_gap_rates/Rhamnogal_lyase.gap.json
@@ -0,0 +1 @@
+{"family": "Rhamnogal_lyase", "n_seqs": 180, "length": 212, "gap_rates": [0.95, 0.9444444444444444, 0.9388888888888889, 0.9277777777777778, 0.9111111111111111, 0.8722222222222222, 0.8611111111111112, 0.8222222222222222, 0.8055555555555556, 0.7611111111111111, 0.7222222222222222, 0.6611111111111111, 0.6222222222222222, 0.5944444444444444, 0.5888888888888889, 0.5888888888888889, 0.6222222222222222, 0.5388888888888889, 0.6722222222222223, 0.5055555555555555, 0.46111111111111114, 0.4111111111111111, 0.3388888888888889, 0.22777777777777777, 0.22777777777777777, 0.19444444444444445, 0.18888888888888888, 0.18888888888888888, 0.18888888888888888, 0.18888888888888888, 0.18888888888888888, 0.18888888888888888, 0.18888888888888888, 0.18888888888888888, 0.18888888888888888, 0.18888888888888888, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.17222222222222222, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.17777777777777778, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.17222222222222222, 0.18888888888888888, 0.17777777777777778, 0.25, 0.23333333333333334, 0.18333333333333332, 0.19444444444444445, 0.18333333333333332, 0.17777777777777778, 0.17222222222222222, 0.17222222222222222, 0.16666666666666666, 0.17222222222222222, 0.18888888888888888, 0.18888888888888888, 0.18333333333333332, 0.17777777777777778, 0.18333333333333332, 0.18333333333333332, 0.18888888888888888, 0.19444444444444445, 0.21666666666666667, 0.2222222222222222, 0.21666666666666667, 0.20555555555555555, 0.7222222222222222, 0.7611111111111111, 0.5777777777777777, 0.2111111111111111, 0.18888888888888888, 0.19444444444444445, 0.2, 0.19444444444444445, 0.19444444444444445, 0.18888888888888888, 0.18333333333333332, 0.17777777777777778, 0.17777777777777778, 0.17777777777777778, 0.17222222222222222, 0.17222222222222222, 0.17222222222222222, 0.17222222222222222, 0.16111111111111112, 0.16111111111111112, 0.16111111111111112, 0.16111111111111112, 0.16111111111111112, 0.16111111111111112, 0.16111111111111112, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.16111111111111112, 0.16666666666666666, 0.26666666666666666, 0.25555555555555554, 0.21666666666666667, 0.2111111111111111, 0.2, 0.2, 0.18888888888888888, 0.2, 0.16666666666666666, 0.17222222222222222, 0.16666666666666666, 0.15, 0.15, 0.15, 0.15555555555555556, 0.15, 0.1388888888888889, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.15, 0.15, 0.15, 0.15, 0.15, 0.16111111111111112, 0.16666666666666666, 0.16111111111111112, 0.16111111111111112, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.15555555555555556, 0.16111111111111112, 0.16111111111111112, 0.16111111111111112, 0.16111111111111112, 0.16111111111111112, 0.16111111111111112, 0.16111111111111112, 0.14444444444444443, 0.12777777777777777, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.10555555555555556, 0.10555555555555556, 0.10555555555555556, 0.10555555555555556, 0.10555555555555556, 0.10555555555555556, 0.10555555555555556, 0.10555555555555556, 0.10555555555555556, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.12222222222222222, 0.11666666666666667, 0.1388888888888889, 0.1388888888888889, 0.18333333333333332, 0.32222222222222224, 0.26666666666666666, 0.16111111111111112, 0.20555555555555555, 0.18333333333333332, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.14444444444444443, 0.14444444444444443, 0.14444444444444443, 0.15, 0.16666666666666666, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.19444444444444445], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rho_N.gap.json b/pfam_gap_rates/Rho_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d1bb15e7550569c84afae5d1ce7226d030e37f50
--- /dev/null
+++ b/pfam_gap_rates/Rho_N.gap.json
@@ -0,0 +1 @@
+{"family": "Rho_N", "n_seqs": 1900, "length": 43, "gap_rates": [0.42473684210526313, 0.19894736842105262, 0.13894736842105262, 0.11421052631578947, 0.09105263157894737, 0.05789473684210526, 0.05105263157894737, 0.03368421052631579, 0.029473684210526315, 0.002631578947368421, 0.002631578947368421, 0.002105263157894737, 0.0005263157894736842, 0.0005263157894736842, 0.0005263157894736842, 0.0005263157894736842, 0.0, 0.0, 0.0, 0.02, 0.0010526315789473684, 0.0, 0.0015789473684210526, 0.0, 0.0010526315789473684, 0.0005263157894736842, 0.0, 0.0005263157894736842, 0.0015789473684210526, 0.0015789473684210526, 0.002631578947368421, 0.03684210526315789, 0.05105263157894737, 0.06157894736842105, 0.1463157894736842, 0.18421052631578946, 0.23421052631578948, 0.29, 0.35, 0.4163157894736842, 0.4568421052631579, 0.5363157894736842, 0.6589473684210526], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rib.gap.json b/pfam_gap_rates/Rib.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be0a3d4d372adae816f098047c60faf27743d9d4
--- /dev/null
+++ b/pfam_gap_rates/Rib.gap.json
@@ -0,0 +1 @@
+{"family": "Rib", "n_seqs": 204, "length": 90, "gap_rates": [0.7941176470588235, 0.6764705882352942, 0.5637254901960784, 0.5098039215686274, 0.46078431372549017, 0.45098039215686275, 0.4411764705882353, 0.946078431372549, 0.38235294117647056, 0.3333333333333333, 0.3088235294117647, 0.30392156862745096, 0.27941176470588236, 0.2696078431372549, 0.25980392156862747, 0.2549019607843137, 0.28431372549019607, 0.23529411764705882, 0.20098039215686275, 0.16666666666666666, 0.12254901960784313, 0.10784313725490197, 0.10784313725490197, 0.09803921568627451, 0.09313725490196079, 0.0784313725490196, 0.08333333333333333, 0.05392156862745098, 0.8431372549019608, 0.8921568627450981, 0.9166666666666666, 0.9215686274509803, 0.8970588235294118, 0.8529411764705882, 0.8382352941176471, 0.049019607843137254, 0.05392156862745098, 0.049019607843137254, 0.029411764705882353, 0.7009803921568627, 0.7843137254901961, 0.8431372549019608, 0.8480392156862745, 0.8578431372549019, 0.9166666666666666, 0.9215686274509803, 0.946078431372549, 0.9215686274509803, 0.9166666666666666, 0.8823529411764706, 0.8480392156862745, 0.8431372549019608, 0.8382352941176471, 0.7696078431372549, 0.6813725490196079, 0.024509803921568627, 0.00980392156862745, 0.004901960784313725, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.0, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.9264705882352942, 0.004901960784313725, 0.00980392156862745, 0.00980392156862745, 0.004901960784313725, 0.004901960784313725, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.024509803921568627, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.024509803921568627, 0.0196078431372549, 0.0196078431372549, 0.024509803921568627, 0.03431372549019608, 0.03431372549019608, 0.0392156862745098, 0.08333333333333333, 0.3284313725490196, 0.7794117647058824], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L1.gap.json b/pfam_gap_rates/Ribosomal_L1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..987b0824f965e81a3b067107ade73532ce095bf3
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L1.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L1", "n_seqs": 3311, "length": 222, "gap_rates": [0.8308668076109936, 0.5285412262156448, 0.4152823920265781, 0.33947447900936273, 0.26306251887647236, 0.20416792509815765, 0.19118091211114466, 0.17124735729386892, 0.16309272123225613, 0.15403201449713078, 0.1488976140138931, 0.11507097553609182, 0.932648746602235, 0.9359710057384476, 0.9398973119903352, 0.945031712473573, 0.9374811235276351, 0.9335548172757475, 0.9317426759287224, 0.09574146783449108, 0.08970099667774087, 0.08335850196315313, 0.07943219571126547, 0.07701600724856539, 0.07671398369072788, 0.07610993657505286, 0.7520386590154032, 0.08426457263666566, 0.08064028994261552, 0.07429779522802779, 0.09121111446692842, 0.08698278465720326, 0.0827544548474781, 0.19933554817275748, 0.07701600724856539, 0.07339172455451526, 0.06976744186046512, 0.9383871942011477, 0.06523708849290244, 0.06342494714587738, 0.058894593778314706, 0.057988523104802174, 0.05708245243128964, 0.05617638175777711, 0.05527031108426457, 0.05466626396858955, 0.05436424041075204, 0.05406221685291453, 0.05406221685291453, 0.06070673512533978, 0.058592570220477196, 0.05466626396858955, 0.920265780730897, 0.8939897311990336, 0.053156146179401995, 0.04771972213832679, 0.047417698580489276, 0.047115675022651765, 0.047115675022651765, 0.046813651464814254, 0.047115675022651765, 0.047417698580489276, 0.047417698580489276, 0.047417698580489276, 0.05406221685291453, 0.052854122621564484, 0.05496828752642706, 0.8876472364844458, 0.9465418302627605, 0.9411054062216853, 0.8683177287828451, 0.8456659619450317, 0.06463304137722742, 0.058290546662639685, 0.05708245243128964, 0.05557233464210208, 0.05466626396858955, 0.05406221685291453, 0.8964059196617337, 0.9139232860163092, 0.8846270009060707, 0.8640893989731199, 0.04620960434913923, 0.04379341588643914, 0.04318936877076412, 0.041981274539414075, 0.04047115675022652, 0.040169133192389, 0.03956508607671398, 0.04107520386590154, 0.03926306251887647, 0.03865901540320145, 0.03775294472968892, 0.037148897614013895, 0.036544850498338874, 0.7043189368770764, 0.7266686801570522, 0.7384475989127152, 0.7260646330413772, 0.7103594080338267, 0.5964965267290848, 0.029296285110238598, 0.02778616732105104, 0.028692237994563576, 0.026880096647538508, 0.025974025974025976, 0.023859861069163393, 0.023859861069163393, 0.023557837511325883, 0.023859861069163393, 0.023557837511325883, 0.023255813953488372, 0.024161884627000908, 0.02446390818483842, 0.02446390818483842, 0.025974025974025976, 0.02567200241618846, 0.023255813953488372, 0.02234974327997584, 0.020839625490788282, 0.020839625490788282, 0.020839625490788282, 0.02234974327997584, 0.7094533373603141, 0.02476593174267593, 0.023859861069163393, 0.021141649048625793, 0.02265176683781335, 0.021443672606463304, 0.02234974327997584, 0.020839625490788282, 0.03261854424645122, 0.04409543944427665, 0.030806402899426155, 0.02234974327997584, 0.02234974327997584, 0.02023557837511326, 0.02023557837511326, 0.02053760193295077, 0.9398973119903352, 0.9054666263968589, 0.8030806402899426, 0.0480217456961643, 0.22077922077922077, 0.23527635155542131, 0.20809423135004532, 0.05134400483237692, 0.04439746300211417, 0.026578073089700997, 0.02265176683781335, 0.023255813953488372, 0.02265176683781335, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.02265176683781335, 0.02295379039565086, 0.02295379039565086, 0.02265176683781335, 0.22591362126245848, 0.02476593174267593, 0.04107520386590154, 0.02476593174267593, 0.024161884627000908, 0.023859861069163393, 0.11718514044095439, 0.026276049531863487, 0.02567200241618846, 0.02748414376321353, 0.02778616732105104, 0.02718212020537602, 0.026578073089700997, 0.02567200241618846, 0.02506795530051344, 0.02536997885835095, 0.02536997885835095, 0.02536997885835095, 0.02536997885835095, 0.02567200241618846, 0.025974025974025976, 0.02446390818483842, 0.024161884627000908, 0.02476593174267593, 0.02506795530051344, 0.02506795530051344, 0.02536997885835095, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.026276049531863487, 0.026880096647538508, 0.026880096647538508, 0.026880096647538508, 0.02748414376321353, 0.02778616732105104, 0.028088190878888555, 0.028390214436726065, 0.029296285110238598, 0.030202355783751134, 0.03231652068861371, 0.9483539716097855, 0.0691633947447901, 0.0691633947447901, 0.07067351253397765, 0.07127755964965267, 0.3373603141045001, 0.31893687707641194, 0.07157958320749018, 0.0694654183026276, 0.05225007550588946, 0.051646028390214434, 0.05225007550588946, 0.053760193295077016, 0.05466626396858955, 0.05738447598912715, 0.058290546662639685, 0.06221685291452733, 0.06886137118695258, 0.07520386590154032, 0.08064028994261552, 0.08668076109936575, 0.27604953186348535], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L2_C.gap.json b/pfam_gap_rates/Ribosomal_L2_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8fb6d45c8b4878dd1f84d1eab2058698355dbd8f
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L2_C.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L2_C", "n_seqs": 3104, "length": 140, "gap_rates": [0.4739046391752577, 0.050579896907216496, 0.03608247422680412, 0.0351159793814433, 0.03479381443298969, 0.034471649484536085, 0.034471649484536085, 0.034471649484536085, 0.033827319587628864, 0.025128865979381444, 0.020940721649484535, 0.020940721649484535, 0.020618556701030927, 0.019652061855670103, 0.019007731958762885, 0.019007731958762885, 0.01836340206185567, 0.01836340206185567, 0.01836340206185567, 0.01836340206185567, 0.01804123711340206, 0.01804123711340206, 0.017719072164948453, 0.01804123711340206, 0.017396907216494846, 0.017074742268041235, 0.017074742268041235, 0.017396907216494846, 0.017396907216494846, 0.01675257731958763, 0.01675257731958763, 0.01675257731958763, 0.01675257731958763, 0.01675257731958763, 0.01675257731958763, 0.01675257731958763, 0.01675257731958763, 0.01675257731958763, 0.017074742268041235, 0.017074742268041235, 0.017074742268041235, 0.015786082474226804, 0.015786082474226804, 0.8563144329896907, 0.8308634020618557, 0.014819587628865979, 0.019007731958762885, 0.014819587628865979, 0.014497422680412372, 0.013530927835051547, 0.013530927835051547, 0.013530927835051547, 0.013853092783505154, 0.013530927835051547, 0.013530927835051547, 0.013530927835051547, 0.013530927835051547, 0.014175257731958763, 0.013853092783505154, 0.013853092783505154, 0.014175257731958763, 0.014175257731958763, 0.015141752577319588, 0.014175257731958763, 0.014819587628865979, 0.014819587628865979, 0.015463917525773196, 0.015463917525773196, 0.014819587628865979, 0.014819587628865979, 0.014819587628865979, 0.015463917525773196, 0.014497422680412372, 0.014497422680412372, 0.014497422680412372, 0.014819587628865979, 0.015141752577319588, 0.015463917525773196, 0.01610824742268041, 0.015141752577319588, 0.014497422680412372, 0.013853092783505154, 0.01288659793814433, 0.01288659793814433, 0.01288659793814433, 0.01288659793814433, 0.013208762886597938, 0.013208762886597938, 0.013530927835051547, 0.013853092783505154, 0.013853092783505154, 0.013853092783505154, 0.8524484536082474, 0.852770618556701, 0.8534149484536082, 0.852770618556701, 0.851159793814433, 0.014175257731958763, 0.014819587628865979, 0.01836340206185567, 0.019652061855670103, 0.02416237113402062, 0.031894329896907214, 0.03865979381443299, 0.03865979381443299, 0.03865979381443299, 0.039304123711340205, 0.03801546391752577, 0.038337628865979384, 0.0389819587628866, 0.03962628865979381, 0.03994845360824742, 0.04091494845360825, 0.04091494845360825, 0.04091494845360825, 0.04091494845360825, 0.04478092783505155, 0.04768041237113402, 0.04735824742268041, 0.8724226804123711, 0.8746778350515464, 0.8727448453608248, 0.8701675257731959, 0.04445876288659794, 0.04381443298969072, 0.8975515463917526, 0.885631443298969, 0.05283505154639175, 0.0856958762886598, 0.10115979381443299, 0.6572164948453608, 0.11469072164948453, 0.21681701030927836, 0.13820876288659795, 0.15431701030927836, 0.19104381443298968, 0.19619845360824742, 0.20779639175257733, 0.21681701030927836, 0.24291237113402062], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L36e.gap.json b/pfam_gap_rates/Ribosomal_L36e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c157ddfbc6c7344e8d8d5d785c4d9e72fd181d97
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L36e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L36e", "n_seqs": 456, "length": 104, "gap_rates": [0.5855263157894737, 0.24561403508771928, 0.16666666666666666, 0.1513157894736842, 0.14692982456140352, 0.1425438596491228, 0.13596491228070176, 0.13596491228070176, 0.1337719298245614, 0.12938596491228072, 0.12938596491228072, 0.11842105263157894, 0.1118421052631579, 0.1118421052631579, 0.10964912280701754, 0.10964912280701754, 0.9254385964912281, 0.9495614035087719, 0.9495614035087719, 0.9385964912280702, 0.9035087719298246, 0.1118421052631579, 0.10964912280701754, 0.1162280701754386, 0.10964912280701754, 0.10307017543859649, 0.1074561403508772, 0.10307017543859649, 0.10087719298245613, 0.09210526315789473, 0.08771929824561403, 0.08333333333333333, 0.06798245614035088, 0.046052631578947366, 0.043859649122807015, 0.04824561403508772, 0.05043859649122807, 0.04824561403508772, 0.046052631578947366, 0.043859649122807015, 0.04824561403508772, 0.046052631578947366, 0.046052631578947366, 0.04824561403508772, 0.043859649122807015, 0.041666666666666664, 0.041666666666666664, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.041666666666666664, 0.039473684210526314, 0.041666666666666664, 0.039473684210526314, 0.041666666666666664, 0.04824561403508772, 0.046052631578947366, 0.04824561403508772, 0.05043859649122807, 0.046052631578947366, 0.043859649122807015, 0.046052631578947366, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.9057017543859649, 0.9057017543859649, 0.9057017543859649, 0.043859649122807015, 0.05263157894736842, 0.05043859649122807, 0.04824561403508772, 0.046052631578947366, 0.04824561403508772, 0.046052631578947366, 0.04824561403508772, 0.05043859649122807, 0.05482456140350877, 0.05701754385964912, 0.05701754385964912, 0.05482456140350877, 0.05701754385964912, 0.06140350877192982, 0.07236842105263158, 0.07456140350877193, 0.07894736842105263, 0.07894736842105263, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08552631578947369, 0.08552631578947369, 0.09649122807017543, 0.09868421052631579, 0.09868421052631579, 0.10087719298245613, 0.10526315789473684, 0.10964912280701754, 0.1162280701754386, 0.12719298245614036, 0.13815789473684212, 0.1600877192982456, 0.19078947368421054, 0.44298245614035087], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L5e.gap.json b/pfam_gap_rates/Ribosomal_L5e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f20b82c6962f585522745dd1141031ff358b365
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L5e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L5e", "n_seqs": 599, "length": 166, "gap_rates": [0.337228714524207, 0.2287145242070117, 0.21869782971619364, 0.21535893155258765, 0.21535893155258765, 0.21202003338898165, 0.19532554257095158, 0.19365609348914858, 0.19365609348914858, 0.19532554257095158, 0.19532554257095158, 0.18864774624373956, 0.18864774624373956, 0.18864774624373956, 0.18864774624373956, 0.18697829716193656, 0.18697829716193656, 0.18697829716193656, 0.18697829716193656, 0.18697829716193656, 0.18697829716193656, 0.18697829716193656, 0.18697829716193656, 0.18697829716193656, 0.19532554257095158, 0.2387312186978297, 0.25041736227045075, 0.27712854757929883, 0.3021702838063439, 0.3105175292153589, 0.3121869782971619, 0.3055091819699499, 0.2621035058430718, 0.25208681135225375, 0.22370617696160267, 0.2003338898163606, 0.18697829716193656, 0.17028380634390652, 0.1686143572621035, 0.17195325542570952, 0.17195325542570952, 0.17195325542570952, 0.17028380634390652, 0.17195325542570952, 0.17529215358931552, 0.17362270450751252, 0.17195325542570952, 0.17195325542570952, 0.17028380634390652, 0.1686143572621035, 0.1686143572621035, 0.17195325542570952, 0.17195325542570952, 0.1686143572621035, 0.1669449081803005, 0.1636060100166945, 0.16193656093489148, 0.16193656093489148, 0.16026711185308848, 0.14691151919866444, 0.1419031719532554, 0.13689482470784642, 0.13689482470784642, 0.1352253756260434, 0.1352253756260434, 0.1318864774624374, 0.1318864774624374, 0.1318864774624374, 0.1318864774624374, 0.1318864774624374, 0.1335559265442404, 0.1335559265442404, 0.1352253756260434, 0.1335559265442404, 0.1352253756260434, 0.1352253756260434, 0.1352253756260434, 0.1352253756260434, 0.14023372287145242, 0.13856427378964942, 0.1419031719532554, 0.1419031719532554, 0.1419031719532554, 0.14023372287145242, 0.13856427378964942, 0.13856427378964942, 0.13689482470784642, 0.13856427378964942, 0.13856427378964942, 0.13856427378964942, 0.13856427378964942, 0.13856427378964942, 0.13856427378964942, 0.13689482470784642, 0.13689482470784642, 0.14858096828046743, 0.1636060100166945, 0.17863105175292154, 0.20701168614357263, 0.25041736227045075, 0.25208681135225375, 0.24540901502504173, 0.24540901502504173, 0.24707846410684475, 0.24707846410684475, 0.24707846410684475, 0.24540901502504173, 0.24540901502504173, 0.2704507512520868, 0.2587646076794658, 0.25375626043405675, 0.25542570951585974, 0.25542570951585974, 0.2570951585976628, 0.25542570951585974, 0.25542570951585974, 0.25542570951585974, 0.25375626043405675, 0.25375626043405675, 0.25542570951585974, 0.2637729549248748, 0.3055091819699499, 0.8764607679465777, 0.9282136894824707, 0.8530884808013356, 0.38898163606010017, 0.2604340567612688, 0.25375626043405675, 0.25208681135225375, 0.24373956594323873, 0.24040066777963273, 0.2287145242070117, 0.18697829716193656, 0.18363939899833054, 0.18030050083472454, 0.17863105175292154, 0.17863105175292154, 0.17863105175292154, 0.17696160267111852, 0.17529215358931552, 0.17529215358931552, 0.17529215358931552, 0.17529215358931552, 0.17529215358931552, 0.17529215358931552, 0.17529215358931552, 0.17529215358931552, 0.17529215358931552, 0.17529215358931552, 0.17529215358931552, 0.17696160267111852, 0.17863105175292154, 0.17863105175292154, 0.18030050083472454, 0.18030050083472454, 0.18363939899833054, 0.18530884808013356, 0.18530884808013356, 0.19031719532554256, 0.19031719532554256, 0.19031719532554256, 0.19365609348914858, 0.19365609348914858, 0.19532554257095158, 0.2020033388981636, 0.29549248747913187], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S10.gap.json b/pfam_gap_rates/Ribosomal_S10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf39e898df395f73f0a53bc97183a8a3ebbc8afc
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S10.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S10", "n_seqs": 3084, "length": 99, "gap_rates": [0.12354085603112841, 0.05252918287937743, 0.047665369649805445, 0.03858625162127108, 0.03728923476005188, 0.03696498054474708, 0.03631647211413749, 0.03599221789883268, 0.03501945525291829, 0.03501945525291829, 0.033073929961089495, 0.031776913099870296, 0.029182879377431907, 0.02821011673151751, 0.026588845654993514, 0.026264591439688716, 0.026264591439688716, 0.026264591439688716, 0.026264591439688716, 0.025616083009079117, 0.024319066147859923, 0.023994811932555125, 0.023670557717250323, 0.023346303501945526, 0.023346303501945526, 0.023022049286640728, 0.023022049286640728, 0.023346303501945526, 0.022697795071335927, 0.02237354085603113, 0.01848249027237354, 0.02237354085603113, 0.011348897535667963, 0.010376134889753566, 0.009727626459143969, 0.008430609597924773, 0.008430609597924773, 0.008106355382619975, 0.007782101167315175, 0.007782101167315175, 0.0074578469520103765, 0.008106355382619975, 0.008754863813229572, 0.007782101167315175, 0.0074578469520103765, 0.006809338521400778, 0.005836575875486381, 0.005836575875486381, 0.005836575875486381, 0.005836575875486381, 0.00648508430609598, 0.028534370946822308, 0.8420881971465629, 0.025616083009079117, 0.00616083009079118, 0.00616083009079118, 0.00616083009079118, 0.005836575875486381, 0.00648508430609598, 0.00616083009079118, 0.00648508430609598, 0.005836575875486381, 0.00616083009079118, 0.00616083009079118, 0.00648508430609598, 0.007133592736705577, 0.008106355382619975, 0.008430609597924773, 0.008430609597924773, 0.009079118028534372, 0.008106355382619975, 0.07425421530479896, 0.11089494163424124, 0.01297016861219196, 0.011997405966277562, 0.011673151750972763, 0.01232166018158236, 0.011997405966277562, 0.01297016861219196, 0.013294422827496757, 0.014915693904020753, 0.01523994811932555, 0.017185473411154346, 0.01880674448767834, 0.892023346303502, 0.8923476005188068, 0.8910505836575876, 0.04312581063553826, 0.024319066147859923, 0.02885862516212711, 0.02885862516212711, 0.02885862516212711, 0.02885862516212711, 0.029507133592736705, 0.0304798962386511, 0.0314526588845655, 0.04085603112840467, 0.055771725032425425, 0.2619974059662776], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S18.gap.json b/pfam_gap_rates/Ribosomal_S18.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a3a609a2f47ac0eaee13a5eec25f3ce33a8e824e
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S18.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S18", "n_seqs": 2556, "length": 53, "gap_rates": [0.8564162754303599, 0.508998435054773, 0.25, 0.12050078247261346, 0.07472613458528951, 0.04616588419405321, 0.035211267605633804, 0.03051643192488263, 0.01134585289514867, 0.011737089201877934, 0.008215962441314555, 0.006651017214397496, 0.005868544600938967, 0.004694835680751174, 0.003912363067292645, 0.003129890453834116, 0.0019561815336463224, 0.9420970266040689, 0.0019561815336463224, 0.0019561815336463224, 0.0019561815336463224, 0.001564945226917058, 0.001564945226917058, 0.001564945226917058, 0.0011737089201877935, 0.0011737089201877935, 0.0011737089201877935, 0.001564945226917058, 0.001564945226917058, 0.001564945226917058, 0.0011737089201877935, 0.0011737089201877935, 0.002347417840375587, 0.0027386541471048514, 0.003129890453834116, 0.003129890453834116, 0.003912363067292645, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.005086071987480438, 0.007042253521126761, 0.006651017214397496, 0.007042253521126761, 0.00782472613458529, 0.007433489827856025, 0.00782472613458529, 0.009780907668231613, 0.01056338028169014, 0.012128325508607199, 0.017605633802816902, 0.042644757433489826, 0.09272300469483569], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RnfC_N.gap.json b/pfam_gap_rates/RnfC_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..41c7a3a6bb77e58f37c5a3255455693cb3fc2a16
--- /dev/null
+++ b/pfam_gap_rates/RnfC_N.gap.json
@@ -0,0 +1 @@
+{"family": "RnfC_N", "n_seqs": 839, "length": 106, "gap_rates": [0.8843861740166865, 0.4767580452920143, 0.42908224076281287, 0.36829558998808104, 0.2800953516090584, 0.27056019070321813, 0.25148986889153757, 0.2359952324195471, 0.232419547079857, 0.22407628128724671, 0.22288438617401668, 0.22288438617401668, 0.2205005959475566, 0.3134684147794994, 0.2598331346841478, 0.21454112038140644, 0.21096543504171633, 0.2061978545887962, 0.20023837902264602, 0.19189511323003575, 0.18831942789034564, 0.18474374255065554, 0.1799761620977354, 0.16209773539928488, 0.14898688915375446, 0.10965435041716329, 0.07747318235995232, 0.060786650774731825, 0.04290822407628129, 0.03098927294398093, 0.023837902264600714, 0.013110846245530394, 0.010727056019070322, 0.00834326579261025, 0.00834326579261025, 0.011918951132300357, 0.028605482717520857, 0.010727056019070322, 0.009535160905840286, 0.009535160905840286, 0.007151370679380214, 0.0059594755661501785, 0.003575685339690107, 0.0023837902264600714, 0.0011918951132300357, 0.0023837902264600714, 0.0023837902264600714, 0.003575685339690107, 0.003575685339690107, 0.003575685339690107, 0.003575685339690107, 0.003575685339690107, 0.003575685339690107, 0.003575685339690107, 0.003575685339690107, 0.003575685339690107, 0.003575685339690107, 0.003575685339690107, 0.003575685339690107, 0.003575685339690107, 0.003575685339690107, 0.003575685339690107, 0.004767580452920143, 0.9189511323003575, 0.004767580452920143, 0.11918951132300358, 0.011918951132300357, 0.0059594755661501785, 0.0023837902264600714, 0.003575685339690107, 0.0023837902264600714, 0.0023837902264600714, 0.0023837902264600714, 0.0023837902264600714, 0.0023837902264600714, 0.0023837902264600714, 0.0023837902264600714, 0.0023837902264600714, 0.0023837902264600714, 0.004767580452920143, 0.004767580452920143, 0.007151370679380214, 0.009535160905840286, 0.028605482717520857, 0.05363528009535161, 0.08104886769964244, 0.11561382598331346, 0.14898688915375446, 0.16090584028605484, 0.16805721096543505, 0.1871275327771156, 0.933253873659118, 0.9213349225268176, 0.17759237187127533, 0.18235995232419547, 0.8593563766388558, 0.8581644815256257, 0.18116805721096543, 0.18116805721096543, 0.1835518474374255, 0.18593563766388557, 0.18831942789034564, 0.22526817640047675, 0.24910607866507747, 0.30274135876042907, 0.6519666269368296], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RrnaAD.gap.json b/pfam_gap_rates/RrnaAD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..56920e0e3ab57aab44b8a4df3a30c00b3d4eda15
--- /dev/null
+++ b/pfam_gap_rates/RrnaAD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Rsd_AlgQ.gap.json b/pfam_gap_rates/Rsd_AlgQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ff71b8a6db56710eee937e2c11e8fd3e0c69041f
--- /dev/null
+++ b/pfam_gap_rates/Rsd_AlgQ.gap.json
@@ -0,0 +1 @@
+{"family": "Rsd_AlgQ", "n_seqs": 105, "length": 156, "gap_rates": [0.23809523809523808, 0.23809523809523808, 0.22857142857142856, 0.21904761904761905, 0.19047619047619047, 0.18095238095238095, 0.1619047619047619, 0.1619047619047619, 0.13333333333333333, 0.11428571428571428, 0.09523809523809523, 0.09523809523809523, 0.08571428571428572, 0.08571428571428572, 0.0761904761904762, 0.05714285714285714, 0.0380952380952381, 0.0380952380952381, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.0380952380952381, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.09523809523809523, 0.08571428571428572, 0.34285714285714286, 0.4095238095238095, 0.8952380952380953, 0.9142857142857143, 0.7238095238095238, 0.2761904761904762, 0.2, 0.10476190476190476, 0.02857142857142857, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.20952380952380953, 0.09523809523809523, 0.7619047619047619, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.0, 0.0, 0.009523809523809525, 0.9428571428571428, 0.638095238095238, 0.26666666666666666, 0.1619047619047619, 0.14285714285714285, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.0380952380952381, 0.0380952380952381, 0.06666666666666667, 0.2, 0.5904761904761905], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RseC_MucC.gap.json b/pfam_gap_rates/RseC_MucC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..82d8c90203e258fe82674324f6dd2177a1494380
--- /dev/null
+++ b/pfam_gap_rates/RseC_MucC.gap.json
@@ -0,0 +1 @@
+{"family": "RseC_MucC", "n_seqs": 421, "length": 145, "gap_rates": [0.33729216152019004, 0.28978622327790976, 0.25653206650831356, 0.21377672209026127, 0.15201900237529692, 0.12351543942992874, 0.0997624703087886, 0.09501187648456057, 0.09263657957244656, 0.09026128266033254, 0.0855106888361045, 0.08076009501187649, 0.07363420427553444, 0.07125890736342043, 0.0831353919239905, 0.06413301662707839, 0.05938242280285035, 0.057007125890736345, 0.057007125890736345, 0.05463182897862233, 0.05463182897862233, 0.9144893111638955, 0.05463182897862233, 0.057007125890736345, 0.332541567695962, 0.31116389548693585, 0.2684085510688836, 0.05463182897862233, 0.047505938242280284, 0.5961995249406176, 0.66270783847981, 0.7672209026128266, 0.669833729216152, 0.6318289786223278, 0.5676959619952494, 0.4085510688836104, 0.3847980997624703, 0.9121140142517815, 0.2327790973871734, 0.0665083135391924, 0.04275534441805225, 0.040380047505938245, 0.03800475059382423, 0.0332541567695962, 0.028503562945368172, 0.028503562945368172, 0.023752969121140142, 0.023752969121140142, 0.023752969121140142, 0.8907363420427553, 0.8456057007125891, 0.0166270783847981, 0.014251781472684086, 0.014251781472684086, 0.019002375296912115, 0.014251781472684086, 0.009501187648456057, 0.009501187648456057, 0.009501187648456057, 0.009501187648456057, 0.009501187648456057, 0.009501187648456057, 0.009501187648456057, 0.007125890736342043, 0.007125890736342043, 0.007125890736342043, 0.011876484560570071, 0.007125890736342043, 0.007125890736342043, 0.007125890736342043, 0.004750593824228029, 0.007125890736342043, 0.007125890736342043, 0.004750593824228029, 0.009501187648456057, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.007125890736342043, 0.004750593824228029, 0.007125890736342043, 0.007125890736342043, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.4156769596199525, 0.5843230403800475, 0.6603325415676959, 0.9168646080760094, 0.8266033254156769, 0.6247030878859857, 0.5201900237529691, 0.07363420427553444, 0.04513064133016627, 0.019002375296912115, 0.009501187648456057, 0.007125890736342043, 0.007125890736342043, 0.007125890736342043, 0.007125890736342043, 0.007125890736342043, 0.007125890736342043, 0.007125890736342043, 0.007125890736342043, 0.007125890736342043, 0.007125890736342043, 0.007125890736342043, 0.007125890736342043, 0.007125890736342043, 0.009501187648456057, 0.009501187648456057, 0.009501187648456057, 0.009501187648456057, 0.009501187648456057, 0.009501187648456057, 0.009501187648456057, 0.0166270783847981, 0.035629453681710214, 0.052256532066508314, 0.0688836104513064, 0.171021377672209, 0.15676959619952494, 0.15914489311163896, 0.1828978622327791, 0.1995249406175772, 0.2494061757719715, 0.26128266033254155, 0.29691211401425177, 0.35391923990498814, 0.39667458432304037, 0.44418052256532065, 0.5368171021377672, 0.7790973871733967], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/S1_2.gap.json b/pfam_gap_rates/S1_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..83504e3f166e7c59a5ad2cd625364fd8877ffffa
--- /dev/null
+++ b/pfam_gap_rates/S1_2.gap.json
@@ -0,0 +1 @@
+{"family": "S1_2", "n_seqs": 909, "length": 68, "gap_rates": [0.28272827282728275, 0.10121012101210121, 0.0968096809680968, 0.0671067106710671, 0.0539053905390539, 0.0407040704070407, 0.019801980198019802, 0.013201320132013201, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.0088008800880088, 0.0088008800880088, 0.005500550055005501, 0.005500550055005501, 0.0044004400440044, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.9317931793179318, 0.9416941694169417, 0.9273927392739274, 0.0088008800880088, 0.9042904290429042, 0.9328932893289329, 0.8635863586358636, 0.0088008800880088, 0.0088008800880088, 0.006600660066006601, 0.2706270627062706, 0.0022002200220022, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0, 0.0011001100110011, 0.0011001100110011, 0.0022002200220022, 0.0044004400440044, 0.0352035203520352, 0.0231023102310231, 0.9097909790979097, 0.0033003300330033004, 0.0022002200220022, 0.0022002200220022, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0011001100110011, 0.0011001100110011, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0121012101210121, 0.005500550055005501, 0.0088008800880088, 0.009900990099009901, 0.015401540154015401, 0.0187018701870187, 0.026402640264026403, 0.0484048404840484, 0.13091309130913092, 0.7392739273927392], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SAP30_Sin3_bdg.gap.json b/pfam_gap_rates/SAP30_Sin3_bdg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c5bad409750e0c217d04d82703c3d3916f560bf6
--- /dev/null
+++ b/pfam_gap_rates/SAP30_Sin3_bdg.gap.json
@@ -0,0 +1 @@
+{"family": "SAP30_Sin3_bdg", "n_seqs": 303, "length": 56, "gap_rates": [0.3102310231023102, 0.2871287128712871, 0.28052805280528054, 0.2706270627062706, 0.2607260726072607, 0.2607260726072607, 0.2607260726072607, 0.2607260726072607, 0.25742574257425743, 0.2508250825082508, 0.24752475247524752, 0.24752475247524752, 0.24092409240924093, 0.24092409240924093, 0.24092409240924093, 0.6435643564356436, 0.24092409240924093, 0.22442244224422442, 0.9471947194719472, 0.20462046204620463, 0.16501650165016502, 0.10231023102310231, 0.0627062706270627, 0.0462046204620462, 0.036303630363036306, 0.0165016501650165, 0.0165016501650165, 0.006600660066006601, 0.009900990099009901, 0.006600660066006601, 0.006600660066006601, 0.009900990099009901, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.026402640264026403, 0.9306930693069307, 0.0297029702970297, 0.033003300330033, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.036303630363036306, 0.0462046204620462, 0.08250825082508251, 0.11551155115511551, 0.21122112211221122], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SARAF.gap.json b/pfam_gap_rates/SARAF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e28ada075f00483ddabbf4ce66f0f7549944df1
--- /dev/null
+++ b/pfam_gap_rates/SARAF.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SEP.gap.json b/pfam_gap_rates/SEP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b87778ee640a728a1d31da06c9ef9fe76ddbeb8
--- /dev/null
+++ b/pfam_gap_rates/SEP.gap.json
@@ -0,0 +1 @@
+{"family": "SEP", "n_seqs": 473, "length": 77, "gap_rates": [0.09302325581395349, 0.023255813953488372, 0.021141649048625793, 0.021141649048625793, 0.019027484143763214, 0.016913319238900635, 0.016913319238900635, 0.016913319238900635, 0.016913319238900635, 0.016913319238900635, 0.014799154334038054, 0.023255813953488372, 0.03382663847780127, 0.014799154334038054, 0.014799154334038054, 0.014799154334038054, 0.014799154334038054, 0.014799154334038054, 0.014799154334038054, 0.02748414376321353, 0.02959830866807611, 0.019027484143763214, 0.016913319238900635, 0.014799154334038054, 0.010570824524312896, 0.008456659619450317, 0.008456659619450317, 0.008456659619450317, 0.008456659619450317, 0.010570824524312896, 0.008456659619450317, 0.008456659619450317, 0.008456659619450317, 0.012684989429175475, 0.012684989429175475, 0.019027484143763214, 0.019027484143763214, 0.021141649048625793, 0.021141649048625793, 0.023255813953488372, 0.27061310782241016, 0.12473572938689217, 0.042283298097251586, 0.9260042283298098, 0.03171247357293869, 0.02748414376321353, 0.02748414376321353, 0.02748414376321353, 0.02748414376321353, 0.02959830866807611, 0.03171247357293869, 0.03171247357293869, 0.03171247357293869, 0.03382663847780127, 0.321353065539112, 0.042283298097251586, 0.04439746300211417, 0.042283298097251586, 0.042283298097251586, 0.048625792811839326, 0.0507399577167019, 0.05496828752642706, 0.05919661733615222, 0.06976744186046512, 0.08879492600422834, 0.1649048625792812, 0.5665961945031712, 0.35517970401691334, 0.2854122621564482, 0.2452431289640592, 0.2156448202959831, 0.15856236786469344, 0.15856236786469344, 0.16701902748414377, 0.1733615221987315, 0.19661733615221988, 0.3298097251585624], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SF-assemblin.gap.json b/pfam_gap_rates/SF-assemblin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f6651fad65277a46faf7ec504bf2466235faad6f
--- /dev/null
+++ b/pfam_gap_rates/SF-assemblin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SF3b10.gap.json b/pfam_gap_rates/SF3b10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..05b18a609ee462165f17971e2ab240c1f9a5a860
--- /dev/null
+++ b/pfam_gap_rates/SF3b10.gap.json
@@ -0,0 +1 @@
+{"family": "SF3b10", "n_seqs": 303, "length": 78, "gap_rates": [0.264026402640264, 0.14521452145214522, 0.1254125412541254, 0.11551155115511551, 0.11551155115511551, 0.11221122112211221, 0.09900990099009901, 0.0858085808580858, 0.07590759075907591, 0.06930693069306931, 0.0627062706270627, 0.0594059405940594, 0.0594059405940594, 0.056105610561056105, 0.056105610561056105, 0.056105610561056105, 0.0462046204620462, 0.0462046204620462, 0.0429042904290429, 0.0429042904290429, 0.0429042904290429, 0.0462046204620462, 0.0462046204620462, 0.0429042904290429, 0.036303630363036306, 0.039603960396039604, 0.0297029702970297, 0.0231023102310231, 0.019801980198019802, 0.019801980198019802, 0.0165016501650165, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.013201320132013201, 0.013201320132013201, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.019801980198019802, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.07920792079207921, 0.0858085808580858, 0.0891089108910891, 0.10891089108910891, 0.10891089108910891, 0.11551155115511551, 0.1353135313531353, 0.17491749174917492, 0.20132013201320131, 0.2871287128712871], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SIS.gap.json b/pfam_gap_rates/SIS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b9b9c69ac7085fb79c73c45b15afbf0727a0faf3
--- /dev/null
+++ b/pfam_gap_rates/SIS.gap.json
@@ -0,0 +1 @@
+{"family": "SIS", "n_seqs": 5000, "length": 136, "gap_rates": [0.9084, 0.4822, 0.3892, 0.3092, 0.2442, 0.1476, 0.0954, 0.0734, 0.0582, 0.0524, 0.0502, 0.0498, 0.0496, 0.0496, 0.0494, 0.049, 0.0492, 0.049, 0.049, 0.0494, 0.0488, 0.0484, 0.048, 0.0478, 0.0474, 0.0468, 0.047, 0.0576, 0.0488, 0.047, 0.0472, 0.0506, 0.047, 0.0466, 0.0476, 0.0464, 0.045, 0.0448, 0.044, 0.0444, 0.0426, 0.0432, 0.1346, 0.0822, 0.0772, 0.076, 0.53, 0.082, 0.0434, 0.0272, 0.0138, 0.0086, 0.0058, 0.0054, 0.0048, 0.0044, 0.0034, 0.003, 0.0034, 0.003, 0.003, 0.9462, 0.007, 0.0036, 0.0032, 0.0042, 0.0046, 0.0048, 0.0046, 0.0048, 0.0048, 0.005, 0.0044, 0.0046, 0.005, 0.7908, 0.006, 0.007, 0.0078, 0.0106, 0.0132, 0.012, 0.0106, 0.0098, 0.0104, 0.014, 0.0174, 0.0188, 0.0226, 0.0762, 0.054, 0.0508, 0.0494, 0.057, 0.0602, 0.0582, 0.0588, 0.0586, 0.0588, 0.061, 0.1328, 0.124, 0.0952, 0.0758, 0.0744, 0.0754, 0.0812, 0.0876, 0.0946, 0.1026, 0.1092, 0.1182, 0.836, 0.752, 0.6318, 0.2296, 0.2148, 0.211, 0.1474, 0.1488, 0.1488, 0.1508, 0.153, 0.156, 0.1594, 0.1626, 0.166, 0.1716, 0.1782, 0.1898, 0.2084, 0.2334, 0.2846, 0.3872, 0.5988, 0.936], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SIX1_SD.gap.json b/pfam_gap_rates/SIX1_SD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2fc11ff9e4d24d1c24dc4c2138c89727bac79c85
--- /dev/null
+++ b/pfam_gap_rates/SIX1_SD.gap.json
@@ -0,0 +1 @@
+{"family": "SIX1_SD", "n_seqs": 323, "length": 116, "gap_rates": [0.23839009287925697, 0.19195046439628483, 0.17027863777089783, 0.14551083591331268, 0.14241486068111456, 0.13622291021671826, 0.13312693498452013, 0.12693498452012383, 0.11145510835913312, 0.10526315789473684, 0.09287925696594428, 0.08978328173374613, 0.08668730650154799, 0.08978328173374613, 0.08978328173374613, 0.08668730650154799, 0.08668730650154799, 0.08359133126934984, 0.07739938080495357, 0.07739938080495357, 0.07430340557275542, 0.07430340557275542, 0.06811145510835913, 0.06191950464396285, 0.06191950464396285, 0.06191950464396285, 0.06191950464396285, 0.06191950464396285, 0.06191950464396285, 0.06191950464396285, 0.06191950464396285, 0.6222910216718266, 0.07739938080495357, 0.06501547987616099, 0.6037151702786377, 0.6873065015479877, 0.7120743034055728, 0.6253869969040248, 0.4613003095975232, 0.04024767801857585, 0.06811145510835913, 0.034055727554179564, 0.030959752321981424, 0.030959752321981424, 0.030959752321981424, 0.030959752321981424, 0.030959752321981424, 0.030959752321981424, 0.030959752321981424, 0.030959752321981424, 0.030959752321981424, 0.030959752321981424, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.030959752321981424, 0.030959752321981424, 0.030959752321981424, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.03715170278637771, 0.03715170278637771, 0.03715170278637771, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.03715170278637771, 0.04024767801857585, 0.04024767801857585, 0.043343653250773995, 0.04643962848297214, 0.043343653250773995, 0.03715170278637771, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.043343653250773995, 0.04024767801857585, 0.04024767801857585, 0.04643962848297214, 0.043343653250773995, 0.04024767801857585, 0.04024767801857585, 0.04024767801857585, 0.04024767801857585, 0.034055727554179564, 0.04024767801857585, 0.034055727554179564, 0.03715170278637771, 0.04024767801857585, 0.04024767801857585, 0.043343653250773995, 0.043343653250773995, 0.04643962848297214, 0.043343653250773995, 0.043343653250773995, 0.04024767801857585, 0.043343653250773995, 0.04643962848297214, 0.04953560371517028, 0.04953560371517028, 0.04953560371517028, 0.04953560371517028, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.18885448916408668], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SKA1.gap.json b/pfam_gap_rates/SKA1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..56995136d1b487ab1f59df91b911d5f5e31ad05d
--- /dev/null
+++ b/pfam_gap_rates/SKA1.gap.json
@@ -0,0 +1 @@
+{"family": "SKA1", "n_seqs": 111, "length": 266, "gap_rates": [0.6306306306306306, 0.5675675675675675, 0.5675675675675675, 0.5675675675675675, 0.5405405405405406, 0.5405405405405406, 0.5405405405405406, 0.5405405405405406, 0.5405405405405406, 0.5405405405405406, 0.5315315315315315, 0.5225225225225225, 0.7747747747747747, 0.7387387387387387, 0.5045045045045045, 0.4594594594594595, 0.43243243243243246, 0.43243243243243246, 0.44144144144144143, 0.42342342342342343, 0.6036036036036037, 0.3963963963963964, 0.36936936936936937, 0.35135135135135137, 0.34234234234234234, 0.3333333333333333, 0.2972972972972973, 0.2972972972972973, 0.27927927927927926, 0.2702702702702703, 0.25225225225225223, 0.25225225225225223, 0.24324324324324326, 0.24324324324324326, 0.22522522522522523, 0.21621621621621623, 0.21621621621621623, 0.21621621621621623, 0.2072072072072072, 0.2072072072072072, 0.2072072072072072, 0.2072072072072072, 0.2072072072072072, 0.2072072072072072, 0.2072072072072072, 0.2072072072072072, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SLT.gap.json b/pfam_gap_rates/SLT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1517c26e8d930541991e6405abbc7e5e66f042ef
--- /dev/null
+++ b/pfam_gap_rates/SLT.gap.json
@@ -0,0 +1 @@
+{"family": "SLT", "n_seqs": 5000, "length": 140, "gap_rates": [0.8114, 0.6148, 0.525, 0.4494, 0.3966, 0.338, 0.299, 0.2554, 0.2052, 0.1692, 0.144, 0.1162, 0.0804, 0.066, 0.0536, 0.0428, 0.0374, 0.0336, 0.0326, 0.0214, 0.0182, 0.0168, 0.0166, 0.018, 0.0166, 0.0174, 0.0194, 0.0242, 0.0166, 0.0168, 0.0144, 0.0142, 0.9006, 0.921, 0.9398, 0.9098, 0.8636, 0.0142, 0.041, 0.0272, 0.9176, 0.9276, 0.9422, 0.9482, 0.9492, 0.947, 0.9376, 0.922, 0.9078, 0.013, 0.008, 0.0074, 0.0074, 0.0048, 0.0048, 0.0048, 0.005, 0.005, 0.0054, 0.0064, 0.0068, 0.0082, 0.0098, 0.0842, 0.0842, 0.2424, 0.4318, 0.4368, 0.413, 0.7396, 0.9078, 0.9284, 0.7842, 0.7166, 0.2966, 0.1956, 0.0786, 0.057, 0.0232, 0.0198, 0.0188, 0.0202, 0.0202, 0.0206, 0.019, 0.0188, 0.019, 0.0196, 0.0194, 0.0218, 0.0206, 0.021, 0.0228, 0.0274, 0.0268, 0.03, 0.036, 0.0386, 0.0402, 0.0428, 0.0474, 0.0514, 0.3974, 0.8308, 0.8578, 0.8718, 0.922, 0.8636, 0.8476, 0.8184, 0.0924, 0.0772, 0.0804, 0.0862, 0.088, 0.0884, 0.089, 0.0906, 0.091, 0.097, 0.1056, 0.136, 0.1464, 0.1606, 0.1756, 0.1986, 0.2152, 0.24, 0.2674, 0.2986, 0.3356, 0.4008, 0.4626, 0.5158, 0.5778, 0.6666, 0.7418, 0.809, 0.8746, 0.9312], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SOAR.gap.json b/pfam_gap_rates/SOAR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f3166b5c5975e9f2be21c8789420149d95bd9444
--- /dev/null
+++ b/pfam_gap_rates/SOAR.gap.json
@@ -0,0 +1 @@
+{"family": "SOAR", "n_seqs": 111, "length": 103, "gap_rates": [0.38738738738738737, 0.32432432432432434, 0.2072072072072072, 0.15315315315315314, 0.10810810810810811, 0.05405405405405406, 0.05405405405405406, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.018018018018018018, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.018018018018018018, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.018018018018018018, 0.8378378378378378, 0.8378378378378378, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.018018018018018018, 0.018018018018018018, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.02702702702702703, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.04504504504504504, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.0990990990990991, 0.27927927927927926], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SPRY.gap.json b/pfam_gap_rates/SPRY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ff97ce2a1af253937711d47cb1ee19ebdea8997
--- /dev/null
+++ b/pfam_gap_rates/SPRY.gap.json
@@ -0,0 +1 @@
+{"family": "SPRY", "n_seqs": 3969, "length": 149, "gap_rates": [0.5011337868480725, 0.15671453766691862, 0.11564625850340136, 0.10128495842781557, 0.09901738473167045, 0.0962459057697153, 0.09574200050390527, 0.09498614260519023, 0.08919123204837491, 0.8830939783320736, 0.9236583522297808, 0.9486016628873771, 0.9357520786092215, 0.90854119425548, 0.6444948349710254, 0.5875535399344923, 0.5346434870244394, 0.1292517006802721, 0.08163265306122448, 0.05971277399848828, 0.054673721340388004, 0.0508944318468128, 0.0491307634164777, 0.04887881078357269, 0.04812295288485765, 0.04686318972033258, 0.04509952128999748, 0.04963466868228773, 0.049886621315192746, 0.0508944318468128, 0.05039052658100277, 0.047619047619047616, 0.3885109599395314, 0.3749055177626606, 0.1310153691106072, 0.10783572688334593, 0.08667170571932477, 0.09297052154195011, 0.11413454270597127, 0.7193247669438145, 0.9009826152683296, 0.9433106575963719, 0.9463340891912321, 0.9239103048626858, 0.7689594356261023, 0.6810279667422524, 0.047619047619047616, 0.03779289493575208, 0.03124212648022172, 0.028470647518266567, 0.026958931720836483, 0.026455026455026454, 0.025699168556311415, 0.02418745275888133, 0.023935500125976318, 0.02343159486016629, 0.04106827916351726, 0.9349962207105065, 0.18795666414714035, 0.038296800201562106, 0.027714789619551525, 0.026455026455026454, 0.03476946334089191, 0.15747039556563366, 0.8256487780297304, 0.9395313681027967, 0.9065255731922398, 0.636936255983875, 0.057949105568153185, 0.04585537918871252, 0.039304610733182165, 0.03325774754346183, 0.027966742252456538, 0.0254472159234064, 0.024691358024691357, 0.02670697908793147, 0.027714789619551525, 0.03073822121441169, 0.5228017132779037, 0.046611237087427565, 0.030990173847316706, 0.019652305366591082, 0.9455782312925171, 0.9417989417989417, 0.018644494834971024, 0.015873015873015872, 0.013857394809775762, 0.012345679012345678, 0.012597631645250693, 0.012093726379440665, 0.012345679012345678, 0.013353489543965735, 0.014865205341395817, 0.022675736961451247, 0.030234315948601664, 0.04257999496094734, 0.07407407407407407, 0.07407407407407407, 0.05165028974552784, 0.05416981607457798, 0.056941295036533134, 0.0582010582010582, 0.05845301083396322, 0.05895691609977324, 0.06097253716301335, 0.06147644242882338, 0.9234063995968758, 0.7125220458553791, 0.06651549508692366, 0.07331821617535904, 0.07482993197278912, 0.9140841521793903, 0.9377676996724615, 0.889644746787604, 0.08339632149155958, 0.08944318468127992, 0.09498614260519023, 0.09851347946586042, 0.10052910052910052, 0.1602418745275888, 0.11816578483245149, 0.11564625850340136, 0.11967750062988158, 0.24137062232300327, 0.782816830435878, 0.9450743260267069, 0.8483245149911817, 0.5656336608717561, 0.12144116906021668, 0.12169312169312169, 0.12244897959183673, 0.12320483749055178, 0.12698412698412698, 0.13202317964222726, 0.1509196271101033, 0.18115394305870497, 0.32073570168808263, 0.8286722096245905, 0.30561854371378183, 0.3300579491055681, 0.35878054925673974, 0.3895187704711514, 0.41950113378684806, 0.45905769715293526, 0.5298563869992441, 0.5671453766691862, 0.5986394557823129, 0.6303854875283447, 0.764424288233812], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SRA1.gap.json b/pfam_gap_rates/SRA1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4cd663f93d1ba76d6e508b8c76e5f90f8767303d
--- /dev/null
+++ b/pfam_gap_rates/SRA1.gap.json
@@ -0,0 +1 @@
+{"family": "SRA1", "n_seqs": 174, "length": 168, "gap_rates": [0.8160919540229885, 0.6264367816091954, 0.43103448275862066, 0.3793103448275862, 0.3793103448275862, 0.3620689655172414, 0.3448275862068966, 0.28160919540229884, 0.2413793103448276, 0.23563218390804597, 0.1896551724137931, 0.7471264367816092, 0.8620689655172413, 0.9310344827586207, 0.9022988505747126, 0.8333333333333334, 0.7298850574712644, 0.14942528735632185, 0.13793103448275862, 0.14367816091954022, 0.16091954022988506, 0.25862068965517243, 0.19540229885057472, 0.16666666666666666, 0.16091954022988506, 0.14367816091954022, 0.16091954022988506, 0.16091954022988506, 0.16666666666666666, 0.14942528735632185, 0.11494252873563218, 0.6091954022988506, 0.8333333333333334, 0.8735632183908046, 0.9022988505747126, 0.9310344827586207, 0.9425287356321839, 0.9137931034482759, 0.8908045977011494, 0.8448275862068966, 0.7068965517241379, 0.5459770114942529, 0.13793103448275862, 0.12643678160919541, 0.12643678160919541, 0.12643678160919541, 0.10344827586206896, 0.11494252873563218, 0.07471264367816093, 0.09770114942528736, 0.08045977011494253, 0.07471264367816093, 0.06321839080459771, 0.05747126436781609, 0.05747126436781609, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.04597701149425287, 0.04597701149425287, 0.06896551724137931, 0.07471264367816093, 0.05747126436781609, 0.05747126436781609, 0.040229885057471264, 0.9367816091954023, 0.9367816091954023, 0.9367816091954023, 0.040229885057471264, 0.034482758620689655, 0.06321839080459771, 0.09770114942528736, 0.29310344827586204, 0.06896551724137931, 0.017241379310344827, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.017241379310344827, 0.017241379310344827, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.8793103448275862, 0.011494252873563218, 0.011494252873563218, 0.8735632183908046, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.022988505747126436, 0.022988505747126436, 0.022988505747126436, 0.022988505747126436, 0.022988505747126436, 0.022988505747126436, 0.022988505747126436, 0.022988505747126436, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.9137931034482759, 0.9137931034482759, 0.017241379310344827, 0.9425287356321839, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.022988505747126436, 0.022988505747126436, 0.022988505747126436, 0.022988505747126436, 0.022988505747126436, 0.022988505747126436, 0.022988505747126436, 0.034482758620689655, 0.040229885057471264, 0.040229885057471264, 0.040229885057471264, 0.05747126436781609, 0.1839080459770115, 0.39655172413793105, 0.5747126436781609, 0.632183908045977, 0.7701149425287356, 0.8160919540229885, 0.8390804597701149, 0.8735632183908046, 0.8793103448275862, 0.8908045977011494, 0.9080459770114943, 0.9137931034482759, 0.9310344827586207, 0.9367816091954023, 0.9425287356321839], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/STAS.gap.json b/pfam_gap_rates/STAS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bd0f77ccc86f432ceb641eada4d4bd64bcf1f560
--- /dev/null
+++ b/pfam_gap_rates/STAS.gap.json
@@ -0,0 +1 @@
+{"family": "STAS", "n_seqs": 5000, "length": 151, "gap_rates": [0.9148, 0.8588, 0.7666, 0.6586, 0.578, 0.5022, 0.3804, 0.2612, 0.2008, 0.1674, 0.1194, 0.0952, 0.0782, 0.0716, 0.0634, 0.0586, 0.0544, 0.0516, 0.0482, 0.0472, 0.0464, 0.045, 0.0422, 0.041, 0.0392, 0.0378, 0.0362, 0.0366, 0.0362, 0.0384, 0.0352, 0.0362, 0.0424, 0.0424, 0.0394, 0.0368, 0.0426, 0.0818, 0.3112, 0.8088, 0.8142, 0.8154, 0.7874, 0.822, 0.8636, 0.8758, 0.891, 0.895, 0.8986, 0.9012, 0.903, 0.9052, 0.9068, 0.9096, 0.9118, 0.9164, 0.927, 0.9368, 0.947, 0.9494, 0.943, 0.9316, 0.9198, 0.9134, 0.9102, 0.9078, 0.9056, 0.9044, 0.902, 0.9006, 0.8974, 0.8934, 0.8776, 0.8668, 0.8568, 0.8164, 0.7646, 0.7482, 0.7134, 0.6314, 0.353, 0.0896, 0.009, 0.005, 0.0046, 0.0046, 0.0044, 0.004, 0.0042, 0.0038, 0.0042, 0.0038, 0.0042, 0.0032, 0.0034, 0.0038, 0.0038, 0.0038, 0.004, 0.0042, 0.0042, 0.005, 0.0054, 0.0062, 0.0074, 0.0084, 0.0094, 0.01, 0.0104, 0.011, 0.0354, 0.0304, 0.034, 0.0362, 0.0368, 0.037, 0.0382, 0.0394, 0.0404, 0.0474, 0.0458, 0.0478, 0.0548, 0.0606, 0.0718, 0.0786, 0.0818, 0.085, 0.09, 0.0982, 0.1058, 0.1154, 0.128, 0.1496, 0.1728, 0.2342, 0.2536, 0.2794, 0.674, 0.9346, 0.679, 0.6616, 0.4196, 0.426, 0.4462, 0.4634, 0.4846, 0.5124, 0.5434, 0.59, 0.648], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sbt_1.gap.json b/pfam_gap_rates/Sbt_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..93cff51ef18225476f5b7dad2056642fea291820
--- /dev/null
+++ b/pfam_gap_rates/Sbt_1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SdpI.gap.json b/pfam_gap_rates/SdpI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..494465de9d2604dce3d0f5605abd86ac2256006e
--- /dev/null
+++ b/pfam_gap_rates/SdpI.gap.json
@@ -0,0 +1 @@
+{"family": "SdpI", "n_seqs": 512, "length": 81, "gap_rates": [0.673828125, 0.375, 0.119140625, 0.068359375, 0.05859375, 0.044921875, 0.033203125, 0.017578125, 0.01171875, 0.005859375, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.0, 0.001953125, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005859375, 0.009765625, 0.0078125, 0.005859375, 0.0078125, 0.0078125, 0.009765625, 0.0078125, 0.0078125, 0.009765625, 0.01171875, 0.0078125, 0.009765625, 0.0078125, 0.1015625, 0.310546875, 0.4921875, 0.658203125, 0.751953125, 0.83203125, 0.87890625, 0.86328125, 0.798828125, 0.708984375, 0.564453125, 0.38671875, 0.193359375, 0.056640625, 0.017578125, 0.34765625, 0.287109375, 0.224609375, 0.185546875, 0.060546875, 0.052734375, 0.044921875, 0.037109375, 0.03515625, 0.0390625, 0.046875, 0.060546875, 0.06640625, 0.076171875, 0.09765625, 0.123046875, 0.16796875, 0.232421875, 0.29296875, 0.3828125, 0.517578125, 0.671875], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sec23_BS.gap.json b/pfam_gap_rates/Sec23_BS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3298f11ca59dfb3c5c16391e196eafb725e789a0
--- /dev/null
+++ b/pfam_gap_rates/Sec23_BS.gap.json
@@ -0,0 +1 @@
+{"family": "Sec23_BS", "n_seqs": 1270, "length": 107, "gap_rates": [0.30787401574803147, 0.10393700787401575, 0.05511811023622047, 0.04330708661417323, 0.04015748031496063, 0.03700787401574803, 0.03464566929133858, 0.03464566929133858, 0.03464566929133858, 0.03307086614173228, 0.03228346456692913, 0.030708661417322834, 0.029921259842519685, 0.025196850393700787, 0.025196850393700787, 0.025196850393700787, 0.024409448818897637, 0.024409448818897637, 0.024409448818897637, 0.024409448818897637, 0.025196850393700787, 0.025196850393700787, 0.025984251968503937, 0.025196850393700787, 0.024409448818897637, 0.025984251968503937, 0.6417322834645669, 0.6480314960629922, 0.6448818897637796, 0.6094488188976378, 0.026771653543307086, 0.5952755905511811, 0.5929133858267717, 0.6165354330708661, 0.6157480314960629, 0.6094488188976378, 0.6007874015748031, 0.5976377952755906, 0.5937007874015748, 0.5307086614173229, 0.1062992125984252, 0.09527559055118111, 0.08031496062992126, 0.511023622047244, 0.4858267716535433, 0.03543307086614173, 0.013385826771653543, 0.013385826771653543, 0.014173228346456693, 0.012598425196850394, 0.011811023622047244, 0.011811023622047244, 0.011023622047244094, 0.011023622047244094, 0.009448818897637795, 0.009448818897637795, 0.008661417322834646, 0.007874015748031496, 0.006299212598425197, 0.006299212598425197, 0.006299212598425197, 0.007086614173228346, 0.005511811023622047, 0.6527559055118111, 0.6984251968503937, 0.8661417322834646, 0.9354330708661417, 0.8409448818897638, 0.6811023622047244, 0.6503937007874016, 0.005511811023622047, 0.06456692913385827, 0.027559055118110236, 0.014173228346456693, 0.028346456692913385, 0.18425196850393702, 0.03464566929133858, 0.007086614173228346, 0.007086614173228346, 0.007086614173228346, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.008661417322834646, 0.008661417322834646, 0.009448818897637795, 0.010236220472440945, 0.010236220472440945, 0.011023622047244094, 0.023622047244094488, 0.01732283464566929, 0.01811023622047244, 0.01732283464566929, 0.01889763779527559, 0.01968503937007874, 0.02283464566929134, 0.023622047244094488, 0.024409448818897637, 0.024409448818897637, 0.024409448818897637, 0.025984251968503937, 0.027559055118110236, 0.04488188976377953, 0.07795275590551182, 0.15118110236220472, 0.6023622047244095], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SecA_SW.gap.json b/pfam_gap_rates/SecA_SW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df90b149b08e5f4a15f1aed86e3b8598247f5275
--- /dev/null
+++ b/pfam_gap_rates/SecA_SW.gap.json
@@ -0,0 +1 @@
+{"family": "SecA_SW", "n_seqs": 2413, "length": 270, "gap_rates": [0.3472855366763365, 0.08827186075424782, 0.08246995441359303, 0.07791131371736428, 0.07459593866556154, 0.07003729796933278, 0.06879403232490676, 0.06713634479900539, 0.06672192291753004, 0.0663075010360547, 0.06589307915457936, 0.06589307915457936, 0.06547865727310402, 0.06547865727310402, 0.06547865727310402, 0.06547865727310402, 0.06547865727310402, 0.06506423539162867, 0.06506423539162867, 0.06506423539162867, 0.06506423539162867, 0.06506423539162867, 0.06464981351015334, 0.06464981351015334, 0.06464981351015334, 0.06506423539162867, 0.06506423539162867, 0.06506423539162867, 0.06382096974720265, 0.06340654786572732, 0.06340654786572732, 0.06340654786572732, 0.06340654786572732, 0.06382096974720265, 0.06340654786572732, 0.06299212598425197, 0.06299212598425197, 0.06257770410277663, 0.06257770410277663, 0.06257770410277663, 0.06174886033982594, 0.06174886033982594, 0.0613344384583506, 0.06174886033982594, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SecB.gap.json b/pfam_gap_rates/SecB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2af9fd2f0980bc3b63615028a001d81753e7833
--- /dev/null
+++ b/pfam_gap_rates/SecB.gap.json
@@ -0,0 +1 @@
+{"family": "SecB", "n_seqs": 610, "length": 149, "gap_rates": [0.6213114754098361, 0.37540983606557377, 0.24262295081967214, 0.19672131147540983, 0.17540983606557378, 0.14590163934426228, 0.14098360655737704, 0.1360655737704918, 0.1360655737704918, 0.1360655737704918, 0.13442622950819672, 0.1360655737704918, 0.13442622950819672, 0.13114754098360656, 0.12950819672131147, 0.12950819672131147, 0.12950819672131147, 0.12950819672131147, 0.12950819672131147, 0.12950819672131147, 0.12950819672131147, 0.12950819672131147, 0.12950819672131147, 0.13442622950819672, 0.13278688524590163, 0.12622950819672132, 0.12131147540983607, 0.12295081967213115, 0.12786885245901639, 0.13278688524590163, 0.739344262295082, 0.9442622950819672, 0.11475409836065574, 0.10983606557377049, 0.09672131147540984, 0.09508196721311475, 0.08196721311475409, 0.07868852459016394, 0.06885245901639345, 0.06393442622950819, 0.06393442622950819, 0.06393442622950819, 0.06229508196721312, 0.06229508196721312, 0.06393442622950819, 0.060655737704918035, 0.06229508196721312, 0.05901639344262295, 0.05245901639344262, 0.05245901639344262, 0.8901639344262295, 0.04918032786885246, 0.04918032786885246, 0.9475409836065574, 0.8934426229508197, 0.047540983606557376, 0.04426229508196721, 0.040983606557377046, 0.040983606557377046, 0.036065573770491806, 0.036065573770491806, 0.03442622950819672, 0.03278688524590164, 0.03278688524590164, 0.03114754098360656, 0.03278688524590164, 0.03114754098360656, 0.036065573770491806, 0.03934426229508197, 0.8491803278688524, 0.9377049180327869, 0.8114754098360656, 0.040983606557377046, 0.03442622950819672, 0.03770491803278689, 0.036065573770491806, 0.02622950819672131, 0.022950819672131147, 0.02622950819672131, 0.022950819672131147, 0.022950819672131147, 0.021311475409836064, 0.021311475409836064, 0.021311475409836064, 0.021311475409836064, 0.019672131147540985, 0.019672131147540985, 0.018032786885245903, 0.018032786885245903, 0.018032786885245903, 0.04918032786885246, 0.022950819672131147, 0.9098360655737705, 0.022950819672131147, 0.018032786885245903, 0.014754098360655738, 0.014754098360655738, 0.014754098360655738, 0.01639344262295082, 0.018032786885245903, 0.014754098360655738, 0.014754098360655738, 0.013114754098360656, 0.013114754098360656, 0.011475409836065573, 0.011475409836065573, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.011475409836065573, 0.011475409836065573, 0.011475409836065573, 0.011475409836065573, 0.011475409836065573, 0.011475409836065573, 0.011475409836065573, 0.011475409836065573, 0.011475409836065573, 0.011475409836065573, 0.011475409836065573, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.011475409836065573, 0.011475409836065573, 0.013114754098360656, 0.013114754098360656, 0.014754098360655738, 0.014754098360655738, 0.014754098360655738, 0.014754098360655738, 0.014754098360655738, 0.014754098360655738, 0.019672131147540985, 0.02622950819672131, 0.03114754098360656, 0.036065573770491806, 0.03934426229508197, 0.047540983606557376, 0.06393442622950819, 0.06885245901639345, 0.08524590163934426, 0.09180327868852459, 0.10491803278688525, 0.11967213114754098, 0.13278688524590163, 0.18360655737704917, 0.3163934426229508, 0.8459016393442623], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Seipin.gap.json b/pfam_gap_rates/Seipin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..53da69ef365c1986b24633b27951341eef904dea
--- /dev/null
+++ b/pfam_gap_rates/Seipin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/She9_MDM33.gap.json b/pfam_gap_rates/She9_MDM33.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1a2ba00662acf2f89428029274e3705d307e0acc
--- /dev/null
+++ b/pfam_gap_rates/She9_MDM33.gap.json
@@ -0,0 +1 @@
+{"family": "She9_MDM33", "n_seqs": 145, "length": 198, "gap_rates": [0.42758620689655175, 0.30344827586206896, 0.2413793103448276, 0.22758620689655173, 0.21379310344827587, 0.2, 0.19310344827586207, 0.18620689655172415, 0.1793103448275862, 0.14482758620689656, 0.11724137931034483, 0.11724137931034483, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.08275862068965517, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06206896551724138, 0.06206896551724138, 0.06206896551724138, 0.05517241379310345, 0.05517241379310345, 0.04827586206896552, 0.041379310344827586, 0.9310344827586207, 0.9310344827586207, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.08275862068965517, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.04827586206896552, 0.04827586206896552, 0.04827586206896552, 0.04827586206896552, 0.041379310344827586, 0.04827586206896552, 0.041379310344827586, 0.041379310344827586, 0.04827586206896552, 0.04827586206896552, 0.05517241379310345, 0.04827586206896552, 0.041379310344827586, 0.041379310344827586, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.041379310344827586, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.027586206896551724, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.041379310344827586, 0.034482758620689655, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.034482758620689655, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.04827586206896552, 0.04827586206896552, 0.04827586206896552, 0.05517241379310345, 0.05517241379310345, 0.05517241379310345, 0.05517241379310345, 0.05517241379310345, 0.04827586206896552, 0.04827586206896552, 0.04827586206896552, 0.04827586206896552, 0.04827586206896552, 0.04827586206896552, 0.04827586206896552, 0.05517241379310345, 0.05517241379310345, 0.05517241379310345, 0.05517241379310345, 0.05517241379310345, 0.05517241379310345, 0.05517241379310345, 0.05517241379310345, 0.05517241379310345, 0.06896551724137931, 0.1310344827586207, 0.15172413793103448, 0.16551724137931034, 0.19310344827586207, 0.2206896551724138, 0.3103448275862069, 0.5724137931034483, 0.8137931034482758], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SmpA_OmlA.gap.json b/pfam_gap_rates/SmpA_OmlA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86c44dc530e6b40b784f4ddb6412000d37fdef38
--- /dev/null
+++ b/pfam_gap_rates/SmpA_OmlA.gap.json
@@ -0,0 +1 @@
+{"family": "SmpA_OmlA", "n_seqs": 632, "length": 84, "gap_rates": [0.2199367088607595, 0.1962025316455696, 0.13449367088607594, 0.10917721518987342, 0.09335443037974683, 0.0759493670886076, 0.060126582278481014, 0.0490506329113924, 0.03481012658227848, 0.02531645569620253, 0.014240506329113924, 0.00949367088607595, 0.0031645569620253164, 0.0015822784810126582, 0.0015822784810126582, 0.7642405063291139, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0015822784810126582, 0.007911392405063292, 0.007911392405063292, 0.8955696202531646, 0.012658227848101266, 0.014240506329113924, 0.01740506329113924, 0.01740506329113924, 0.022151898734177215, 0.020569620253164556, 0.9034810126582279, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.028481012658227847, 0.030063291139240507, 0.03322784810126582, 0.03481012658227848, 0.0379746835443038, 0.0379746835443038, 0.09651898734177215, 0.9240506329113924, 0.935126582278481, 0.935126582278481, 0.930379746835443, 0.9193037974683544, 0.1661392405063291, 0.14873417721518986, 0.11708860759493671, 0.7009493670886076, 0.7436708860759493, 0.8069620253164557, 0.75, 0.7167721518987342, 0.6218354430379747, 0.1060126582278481, 0.09651898734177215, 0.055379746835443035, 0.05379746835443038, 0.04746835443037975, 0.04588607594936709, 0.04430379746835443, 0.04430379746835443, 0.04746835443037975, 0.04746835443037975, 0.05221518987341772, 0.055379746835443035, 0.06962025316455696, 0.06645569620253164, 0.08386075949367089, 0.125, 0.20253164556962025, 0.3512658227848101, 0.6218354430379747], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SmpB.gap.json b/pfam_gap_rates/SmpB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8754b0d2b6fcc954537a76ef39383c74309e3ae3
--- /dev/null
+++ b/pfam_gap_rates/SmpB.gap.json
@@ -0,0 +1 @@
+{"family": "SmpB", "n_seqs": 2152, "length": 65, "gap_rates": [0.5204460966542751, 0.19144981412639406, 0.06366171003717472, 0.022304832713754646, 0.012081784386617101, 0.011617100371747211, 0.011152416356877323, 0.011152416356877323, 0.009758364312267658, 0.010223048327137546, 0.00929368029739777, 0.00929368029739777, 0.009758364312267658, 0.00929368029739777, 0.008364312267657992, 0.007899628252788104, 0.007434944237918215, 0.007434944237918215, 0.006970260223048327, 0.006505576208178439, 0.006505576208178439, 0.005111524163568773, 0.004182156133828996, 0.0037174721189591076, 0.0032527881040892194, 0.0032527881040892194, 0.0032527881040892194, 0.0032527881040892194, 0.0032527881040892194, 0.0027881040892193307, 0.0027881040892193307, 0.0023234200743494425, 0.0023234200743494425, 0.0023234200743494425, 0.0013940520446096654, 0.0013940520446096654, 0.0018587360594795538, 0.0013940520446096654, 0.0013940520446096654, 0.0013940520446096654, 0.0013940520446096654, 0.0013940520446096654, 0.0013940520446096654, 0.0013940520446096654, 0.0013940520446096654, 0.0013940520446096654, 0.0013940520446096654, 0.0013940520446096654, 0.0018587360594795538, 0.0018587360594795538, 0.0018587360594795538, 0.0023234200743494425, 0.0023234200743494425, 0.0023234200743494425, 0.0023234200743494425, 0.0032527881040892194, 0.0032527881040892194, 0.004182156133828996, 0.005111524163568773, 0.01533457249070632, 0.019516728624535316, 0.027881040892193308, 0.07342007434944238, 0.20306691449814127, 0.5961895910780669], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SnoaL.gap.json b/pfam_gap_rates/SnoaL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f51a0fac939f9d9d69f1676637aadd76cc17fffa
--- /dev/null
+++ b/pfam_gap_rates/SnoaL.gap.json
@@ -0,0 +1 @@
+{"family": "SnoaL", "n_seqs": 831, "length": 138, "gap_rates": [0.7773766546329723, 0.5691937424789411, 0.48014440433212996, 0.42358604091456076, 0.37184115523465705, 0.32731648616125153, 0.3008423586040915, 0.2779783393501805, 0.259927797833935, 0.309265944645006, 0.2490974729241877, 0.21540312876052947, 0.21419975932611313, 0.19374247894103488, 0.18411552346570398, 0.16125150421179302, 0.12876052948255115, 0.11793020457280386, 0.11191335740072202, 0.10830324909747292, 0.10469314079422383, 0.10469314079422383, 0.10348977135980746, 0.1022864019253911, 0.10348977135980746, 0.10108303249097472, 0.1022864019253911, 0.1022864019253911, 0.10108303249097472, 0.22623345367027678, 0.22382671480144403, 0.2695547533092659, 0.309265944645006, 0.9061371841155235, 0.937424789410349, 0.6570397111913358, 0.09265944645006016, 0.07942238267148015, 0.07460890493381468, 0.07220216606498195, 0.06859205776173286, 0.06859205776173286, 0.06016847172081829, 0.05535499398315283, 0.05415162454873646, 0.049338146811071, 0.048134777376654635, 0.0421179302045728, 0.03850782190132371, 0.03730445246690734, 0.03489771359807461, 0.031287605294825514, 0.031287605294825514, 0.031287605294825514, 0.030084235860409144, 0.030084235860409144, 0.049338146811071, 0.031287605294825514, 0.032490974729241874, 0.030084235860409144, 0.02888086642599278, 0.9386281588447654, 0.8495788206979543, 0.02888086642599278, 0.027677496991576414, 0.027677496991576414, 0.026474127557160047, 0.026474127557160047, 0.02888086642599278, 0.02286401925391095, 0.02527075812274368, 0.021660649819494584, 0.9314079422382672, 0.8724428399518652, 0.026474127557160047, 0.021660649819494584, 0.021660649819494584, 0.02045728038507822, 0.02045728038507822, 0.019253910950661854, 0.02045728038507822, 0.021660649819494584, 0.026474127557160047, 0.03730445246690734, 0.03850782190132371, 0.03489771359807461, 0.03369434416365824, 0.06498194945848375, 0.05776173285198556, 0.05896510228640193, 0.056558363417569195, 0.06498194945848375, 0.06257521058965103, 0.8748495788206979, 0.8892900120336944, 0.9193742478941035, 0.8832731648616126, 0.8592057761732852, 0.05054151624548736, 0.03489771359807461, 0.03369434416365824, 0.019253910950661854, 0.019253910950661854, 0.02045728038507822, 0.015643802647412757, 0.015643802647412757, 0.013237063778580024, 0.012033694344163659, 0.01444043321299639, 0.01444043321299639, 0.01444043321299639, 0.013237063778580024, 0.013237063778580024, 0.013237063778580024, 0.019253910950661854, 0.02045728038507822, 0.02286401925391095, 0.02527075812274368, 0.9169675090252708, 0.02527075812274368, 0.026474127557160047, 0.030084235860409144, 0.032490974729241874, 0.03850782190132371, 0.039711191335740074, 0.04693140794223827, 0.056558363417569195, 0.06377858002406739, 0.07581227436823104, 0.09386281588447654, 0.11311672683513839, 0.13598074608904934, 0.15042117930204574, 0.1624548736462094, 0.17689530685920576, 0.19855595667870035, 0.2226233453670277, 0.39229843561973526], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sre.gap.json b/pfam_gap_rates/Sre.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..17a4b944e6baf5c0b9f7bee9abd80c9c0ee52f3d
--- /dev/null
+++ b/pfam_gap_rates/Sre.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Succ_DH_flav_C.gap.json b/pfam_gap_rates/Succ_DH_flav_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a65aacdf4e0701078a87d29befa475612c9154bc
--- /dev/null
+++ b/pfam_gap_rates/Succ_DH_flav_C.gap.json
@@ -0,0 +1 @@
+{"family": "Succ_DH_flav_C", "n_seqs": 3375, "length": 145, "gap_rates": [0.4402962962962963, 0.26725925925925925, 0.13007407407407406, 0.09925925925925926, 0.09096296296296297, 0.08592592592592592, 0.08503703703703704, 0.0802962962962963, 0.07881481481481481, 0.07762962962962963, 0.07614814814814815, 0.07437037037037036, 0.07111111111111111, 0.06814814814814815, 0.06488888888888888, 0.0637037037037037, 0.06311111111111112, 0.06281481481481481, 0.06251851851851851, 0.06222222222222222, 0.061925925925925926, 0.06222222222222222, 0.06222222222222222, 0.061925925925925926, 0.06251851851851851, 0.061925925925925926, 0.06222222222222222, 0.061925925925925926, 0.06311111111111112, 0.06488888888888888, 0.06666666666666667, 0.06755555555555555, 0.06725925925925925, 0.06933333333333333, 0.8417777777777777, 0.0717037037037037, 0.07348148148148148, 0.1371851851851852, 0.14014814814814816, 0.1371851851851852, 0.1522962962962963, 0.18903703703703703, 0.17303703703703704, 0.18074074074074073, 0.19407407407407407, 0.23733333333333334, 0.24355555555555555, 0.22874074074074074, 0.21748148148148147, 0.21422222222222223, 0.19081481481481483, 0.16177777777777777, 0.13185185185185186, 0.07881481481481481, 0.06548148148148149, 0.048, 0.039407407407407405, 0.034074074074074076, 0.030222222222222223, 0.022814814814814816, 0.02162962962962963, 0.017777777777777778, 0.011555555555555555, 0.007703703703703704, 0.007407407407407408, 0.006518518518518518, 0.006222222222222222, 0.006222222222222222, 0.005925925925925926, 0.006222222222222222, 0.006518518518518518, 0.006222222222222222, 0.006518518518518518, 0.005629629629629629, 0.005333333333333333, 0.005333333333333333, 0.005629629629629629, 0.005629629629629629, 0.005333333333333333, 0.005333333333333333, 0.006222222222222222, 0.005629629629629629, 0.006222222222222222, 0.014222222222222223, 0.016592592592592593, 0.019555555555555555, 0.025777777777777778, 0.031407407407407405, 0.11348148148148147, 0.8562962962962963, 0.8604444444444445, 0.8737777777777778, 0.8619259259259259, 0.8574814814814815, 0.8521481481481481, 0.12562962962962962, 0.13925925925925925, 0.16296296296296298, 0.21451851851851853, 0.2011851851851852, 0.20622222222222222, 0.21066666666666667, 0.21718518518518518, 0.2222222222222222, 0.22518518518518518, 0.22962962962962963, 0.23733333333333334, 0.3914074074074074, 0.4023703703703704, 0.3831111111111111, 0.9496296296296296, 0.9197037037037037, 0.48414814814814816, 0.4485925925925926, 0.4317037037037037, 0.39585185185185184, 0.3665185185185185, 0.36474074074074075, 0.36474074074074075, 0.3674074074074074, 0.37155555555555553, 0.3754074074074074, 0.37866666666666665, 0.3837037037037037, 0.39614814814814814, 0.4157037037037037, 0.42518518518518517, 0.42933333333333334, 0.4331851851851852, 0.43496296296296294, 0.7481481481481481, 0.7638518518518519, 0.8222222222222222, 0.9010370370370371, 0.8225185185185185, 0.7688888888888888, 0.7620740740740741, 0.7457777777777778, 0.44207407407407406, 0.4488888888888889, 0.456, 0.4642962962962963, 0.4657777777777778, 0.4711111111111111, 0.49303703703703705], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/T4SS.gap.json b/pfam_gap_rates/T4SS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d5f602932be37e310dcf6013c6fe313d7eda510e
--- /dev/null
+++ b/pfam_gap_rates/T4SS.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TPD52.gap.json b/pfam_gap_rates/TPD52.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aeba15fa718c1c7328d13e1554a0f1299456d72f
--- /dev/null
+++ b/pfam_gap_rates/TPD52.gap.json
@@ -0,0 +1 @@
+{"family": "TPD52", "n_seqs": 186, "length": 187, "gap_rates": [0.8279569892473119, 0.7634408602150538, 0.7526881720430108, 0.7419354838709677, 0.7311827956989247, 0.7258064516129032, 0.7043010752688172, 0.6827956989247311, 0.6666666666666666, 0.6666666666666666, 0.6559139784946236, 0.6559139784946236, 0.6290322580645161, 0.6290322580645161, 0.5806451612903226, 0.5698924731182796, 0.543010752688172, 0.543010752688172, 0.5268817204301075, 0.5268817204301075, 0.7150537634408602, 0.8817204301075269, 0.46236559139784944, 0.43010752688172044, 0.3763440860215054, 0.3602150537634409, 0.34408602150537637, 0.3118279569892473, 0.2849462365591398, 0.2849462365591398, 0.27956989247311825, 0.27419354838709675, 0.27419354838709675, 0.27419354838709675, 0.27419354838709675, 0.26881720430107525, 0.26881720430107525, 0.25806451612903225, 0.25268817204301075, 0.25268817204301075, 0.25268817204301075, 0.25268817204301075, 0.25268817204301075, 0.25268817204301075, 0.25268817204301075, 0.25268817204301075, 0.25268817204301075, 0.24731182795698925, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24731182795698925, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.25268817204301075, 0.24731182795698925, 0.24731182795698925, 0.25268817204301075, 0.24193548387096775, 0.24731182795698925, 0.24731182795698925, 0.22580645161290322, 0.1774193548387097, 0.11827956989247312, 0.0967741935483871, 0.08602150537634409, 0.0913978494623656, 0.0913978494623656, 0.07526881720430108, 0.07526881720430108, 0.08064516129032258, 0.20430107526881722, 0.20430107526881722, 0.27419354838709675, 0.25268817204301075, 0.25806451612903225, 0.26881720430107525, 0.2849462365591398, 0.2903225806451613, 0.3010752688172043, 0.3010752688172043, 0.27956989247311825, 0.12365591397849462, 0.13440860215053763, 0.13440860215053763, 0.16666666666666666, 0.22580645161290322, 0.24193548387096775, 0.24731182795698925, 0.24731182795698925, 0.25806451612903225, 0.25806451612903225, 0.25806451612903225, 0.25806451612903225, 0.26344086021505375, 0.25806451612903225, 0.25268817204301075, 0.24731182795698925, 0.24731182795698925, 0.25268817204301075, 0.25268817204301075, 0.25268817204301075, 0.8655913978494624, 0.8655913978494624, 0.8655913978494624, 0.8655913978494624, 0.8655913978494624, 0.8655913978494624, 0.9032258064516129, 0.9193548387096774, 0.9193548387096774, 0.9193548387096774, 0.9193548387096774, 0.8655913978494624, 0.8655913978494624, 0.8655913978494624, 0.8655913978494624, 0.8655913978494624, 0.8655913978494624, 0.8655913978494624, 0.25268817204301075, 0.25806451612903225, 0.26881720430107525, 0.27419354838709675, 0.27956989247311825, 0.27956989247311825, 0.27956989247311825, 0.2849462365591398, 0.2849462365591398, 0.2849462365591398, 0.2849462365591398, 0.2849462365591398, 0.2849462365591398, 0.2903225806451613, 0.2903225806451613, 0.6451612903225806, 0.7150537634408602, 0.7043010752688172, 0.6344086021505376, 0.2903225806451613, 0.3172043010752688, 0.3118279569892473, 0.9408602150537635, 0.3333333333333333, 0.34946236559139787, 0.3655913978494624, 0.3978494623655914, 0.41935483870967744, 0.42473118279569894, 0.43548387096774194, 0.45698924731182794, 0.9354838709677419, 0.7634408602150538, 0.6612903225806451, 0.6290322580645161, 0.5645161290322581, 0.5645161290322581, 0.532258064516129, 0.5591397849462365, 0.5645161290322581, 0.5698924731182796, 0.5860215053763441, 0.6505376344086021, 0.6881720430107527, 0.7096774193548387, 0.7204301075268817, 0.7419354838709677, 0.7634408602150538, 0.8494623655913979], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPR_16.gap.json b/pfam_gap_rates/TPR_16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..90182ce62d37a7aaff4d488700fe33e450d2f245
--- /dev/null
+++ b/pfam_gap_rates/TPR_16.gap.json
@@ -0,0 +1 @@
+{"family": "TPR_16", "n_seqs": 5000, "length": 69, "gap_rates": [0.823, 0.601, 0.3962, 0.298, 0.278, 0.2462, 0.2038, 0.1756, 0.1472, 0.1134, 0.085, 0.0692, 0.059, 0.0446, 0.0362, 0.0284, 0.027, 0.0248, 0.021, 0.0164, 0.0198, 0.0102, 0.0084, 0.0062, 0.005, 0.004, 0.004, 0.8086, 0.8106, 0.8056, 0.0274, 0.0414, 0.0328, 0.0322, 0.0282, 0.0028, 0.0026, 0.0034, 0.0042, 0.0042, 0.0046, 0.0058, 0.0078, 0.0096, 0.016, 0.019, 0.0212, 0.0282, 0.0278, 0.0332, 0.0382, 0.0436, 0.0494, 0.0714, 0.9026, 0.0942, 0.11, 0.1262, 0.1506, 0.1758, 0.2292, 0.2924, 0.3458, 0.399, 0.4448, 0.4836, 0.5746, 0.7228, 0.8934], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPR_4.gap.json b/pfam_gap_rates/TPR_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..92186d707d30faf0d0faf41486480eb51f6e9281
--- /dev/null
+++ b/pfam_gap_rates/TPR_4.gap.json
@@ -0,0 +1 @@
+{"family": "TPR_4", "n_seqs": 410, "length": 26, "gap_rates": [0.8585365853658536, 0.6317073170731707, 0.36341463414634145, 0.24878048780487805, 0.15121951219512195, 0.07317073170731707, 0.03902439024390244, 0.007317073170731708, 0.0024390243902439024, 0.0024390243902439024, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00975609756097561, 0.04878048780487805, 0.06097560975609756, 0.13902439024390245, 0.29024390243902437, 0.6634146341463415], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPR_5.gap.json b/pfam_gap_rates/TPR_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fe314a9eef7a9e88c3453920ada650814b31a8af
--- /dev/null
+++ b/pfam_gap_rates/TPR_5.gap.json
@@ -0,0 +1 @@
+{"family": "TPR_5", "n_seqs": 166, "length": 130, "gap_rates": [0.8795180722891566, 0.6626506024096386, 0.4939759036144578, 0.3373493975903614, 0.2469879518072289, 0.21084337349397592, 0.19879518072289157, 0.1927710843373494, 0.18072289156626506, 0.1566265060240964, 0.14457831325301204, 0.13855421686746988, 0.10240963855421686, 0.07228915662650602, 0.060240963855421686, 0.04216867469879518, 0.04216867469879518, 0.04216867469879518, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.03614457831325301, 0.030120481927710843, 0.03614457831325301, 0.03614457831325301, 0.024096385542168676, 0.030120481927710843, 0.024096385542168676, 0.024096385542168676, 0.030120481927710843, 0.024096385542168676, 0.018072289156626505, 0.024096385542168676, 0.024096385542168676, 0.018072289156626505, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.030120481927710843, 0.030120481927710843, 0.04216867469879518, 0.04216867469879518, 0.05421686746987952, 0.06626506024096386, 0.06626506024096386, 0.8253012048192772, 0.06626506024096386, 0.07228915662650602, 0.10240963855421686, 0.3614457831325301, 0.46987951807228917, 0.27710843373493976, 0.15060240963855423, 0.1144578313253012, 0.09036144578313253, 0.08433734939759036, 0.07228915662650602, 0.07228915662650602, 0.0783132530120482, 0.07228915662650602, 0.07228915662650602, 0.07228915662650602, 0.07228915662650602, 0.07228915662650602, 0.0783132530120482, 0.0783132530120482, 0.0783132530120482, 0.08433734939759036, 0.08433734939759036, 0.08433734939759036, 0.08433734939759036, 0.08433734939759036, 0.0963855421686747, 0.0963855421686747, 0.10843373493975904, 0.1144578313253012, 0.12650602409638553, 0.13253012048192772, 0.13253012048192772, 0.1566265060240964, 0.18674698795180722, 0.8674698795180723, 0.8734939759036144, 0.8734939759036144, 0.8734939759036144, 0.8674698795180723, 0.22289156626506024, 0.7951807228915663, 0.8012048192771084, 0.8072289156626506, 0.7951807228915663, 0.7951807228915663, 0.25301204819277107, 0.2710843373493976, 0.30120481927710846, 0.29518072289156627, 0.2891566265060241, 0.2891566265060241, 0.2891566265060241, 0.2891566265060241, 0.2891566265060241, 0.30120481927710846, 0.30120481927710846, 0.3072289156626506, 0.3132530120481928, 0.3433734939759036, 0.3855421686746988, 0.4457831325301205], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TSCPD.gap.json b/pfam_gap_rates/TSCPD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..264a0aaa511205e60f3a2e00de9d9b528c0f4af1
--- /dev/null
+++ b/pfam_gap_rates/TSCPD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TatD_DNase.gap.json b/pfam_gap_rates/TatD_DNase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..34e1733d532fda99a22dba5ddb06716d8067887c
--- /dev/null
+++ b/pfam_gap_rates/TatD_DNase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Tektin.gap.json b/pfam_gap_rates/Tektin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b19b6bd606804966a40d3796b2a06e2d275bb1c2
--- /dev/null
+++ b/pfam_gap_rates/Tektin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Terminase_3.gap.json b/pfam_gap_rates/Terminase_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9a891414834f983c38b2ff8351a7d30af68e2e1d
--- /dev/null
+++ b/pfam_gap_rates/Terminase_3.gap.json
@@ -0,0 +1 @@
+{"family": "Terminase_3", "n_seqs": 250, "length": 468, "gap_rates": [0.74, 0.548, 0.452, 0.38, 0.316, 0.264, 0.236, 0.204, 0.204, 0.204, 0.204, 0.204, 0.204, 0.204, 0.204, 0.204, 0.204, 0.204, 0.204, 0.204, 0.196, 0.196, 0.2, 0.204, 0.196, 0.196, 0.192, 0.188, 0.188, 0.876, 0.928, 0.892, 0.82, 0.184, 0.184, 0.18, 0.176, 0.168, 0.168, 0.62, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.152, 0.152, 0.152, 0.156, 0.156, 0.148, 0.144, 0.144, 0.144, 0.144, 0.144, 0.144, 0.148, 0.148, 0.144, 0.144, 0.144, 0.144, 0.144, 0.144, 0.148, 0.152, 0.148, 0.144, 0.14, 0.136, 0.14, 0.136, 0.128, 0.324, 0.236, 0.524, 0.128, 0.124, 0.124, 0.124, 0.124, 0.128, 0.124, 0.12, 0.12, 0.124, 0.124, 0.12, 0.116, 0.948, 0.812, 0.112, 0.112, 0.112, 0.112, 0.108, 0.108, 0.108, 0.108, 0.112, 0.148, 0.548, 0.604, 0.6, 0.524, 0.132, 0.144, 0.12, 0.12, 0.116, 0.116, 0.116, 0.116, 0.116, 0.116, 0.12, 0.112, 0.108, 0.1, 0.1, 0.1, 0.096, 0.612, 0.096, 0.096, 0.096, 0.1, 0.112, 0.116, 0.112, 0.104, 0.104, 0.676, 0.812, 0.944, 0.696, 0.596, 0.368, 0.308, 0.136, 0.1, 0.1, 0.08, 0.08, 0.08, 0.076, 0.076, 0.076, 0.076, 0.076, 0.748, 0.076, 0.076, 0.084, 0.096, 0.088, 0.088, 0.08, 0.08, 0.088, 0.092, 0.1, 0.088, 0.292, 0.648, 0.64, 0.86, 0.884, 0.904, 0.912, 0.904, 0.9, 0.864, 0.852, 0.316, 0.328, 0.58, 0.528, 0.436, 0.52, 0.64, 0.86, 0.872, 0.94, 0.948, 0.94, 0.876, 0.864, 0.86, 0.456, 0.128, 0.108, 0.104, 0.1, 0.1, 0.1, 0.092, 0.096, 0.096, 0.104, 0.108, 0.096, 0.092, 0.096, 0.792, 0.764, 0.096, 0.096, 0.092, 0.092, 0.092, 0.092, 0.092, 0.092, 0.092, 0.092, 0.096, 0.1, 0.12, 0.108, 0.104, 0.1, 0.128, 0.124, 0.096, 0.1, 0.1, 0.104, 0.1, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.1, 0.104, 0.104, 0.104, 0.116, 0.116, 0.116, 0.116, 0.28, 0.224, 0.232, 0.236, 0.14, 0.152, 0.152, 0.16, 0.176, 0.164, 0.184, 0.168, 0.164, 0.172, 0.18, 0.18, 0.356, 0.3, 0.248, 0.208, 0.176, 0.172, 0.164, 0.164, 0.788, 0.868, 0.912, 0.912, 0.94, 0.944, 0.932, 0.912, 0.884, 0.804, 0.776, 0.164, 0.164, 0.164, 0.164, 0.172, 0.228, 0.188, 0.168, 0.172, 0.188, 0.2, 0.196, 0.192, 0.192, 0.188, 0.192, 0.36, 0.316, 0.2, 0.204, 0.204, 0.2, 0.192, 0.196, 0.192, 0.192, 0.192, 0.192, 0.192, 0.192, 0.192, 0.804, 0.776, 0.948, 0.932, 0.22, 0.208, 0.208, 0.196, 0.204, 0.2, 0.204, 0.2, 0.196, 0.196, 0.196, 0.196, 0.204, 0.204, 0.772, 0.804, 0.832, 0.868, 0.928, 0.948, 0.932, 0.88, 0.852, 0.824, 0.784, 0.72, 0.272, 0.26, 0.224, 0.224, 0.22, 0.216, 0.22, 0.22, 0.22, 0.228, 0.228, 0.22, 0.216, 0.216, 0.224, 0.22, 0.228, 0.28, 0.28, 0.236, 0.228, 0.228, 0.224, 0.208, 0.928, 0.932, 0.94, 0.948, 0.944, 0.936, 0.928, 0.872, 0.628, 0.224, 0.216, 0.212, 0.208, 0.208, 0.208, 0.212, 0.212, 0.216, 0.22, 0.228, 0.22, 0.224, 0.22, 0.216, 0.216, 0.216, 0.212, 0.212, 0.212, 0.216, 0.216, 0.216, 0.216, 0.212, 0.208, 0.208, 0.212, 0.536, 0.844, 0.824, 0.82, 0.82, 0.816, 0.812, 0.808, 0.624, 0.92, 0.932, 0.94, 0.948, 0.94, 0.936, 0.924, 0.912, 0.22, 0.216, 0.216, 0.216, 0.216, 0.216, 0.216, 0.216, 0.216, 0.216, 0.216, 0.216, 0.216, 0.216, 0.216, 0.216, 0.216, 0.216, 0.22, 0.22, 0.22, 0.22, 0.228, 0.232, 0.232, 0.228, 0.944, 0.776, 0.268, 0.264, 0.26, 0.252, 0.244, 0.232, 0.924, 0.232, 0.24, 0.24, 0.24, 0.24, 0.244, 0.244, 0.244, 0.248, 0.316, 0.368, 0.492, 0.896], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ThrE.gap.json b/pfam_gap_rates/ThrE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7598000fc2b7fc7a085822bbfa6336482bdaa360
--- /dev/null
+++ b/pfam_gap_rates/ThrE.gap.json
@@ -0,0 +1 @@
+{"family": "ThrE", "n_seqs": 1317, "length": 259, "gap_rates": [0.721336370539104, 0.21564160971905846, 0.13059984813971146, 0.09567198177676538, 0.08428246013667426, 0.07972665148063782, 0.0774487471526196, 0.07593014426727411, 0.06985573272589218, 0.06454062262718299, 0.05618830675778284, 0.05466970387243736, 0.05466970387243736, 0.05466970387243736, 0.05466970387243736, 0.05466970387243736, 0.05466970387243736, 0.05466970387243736, 0.05466970387243736, 0.05466970387243736, 0.05466970387243736, 0.05466970387243736, 0.05466970387243736, 0.051632498101746395, 0.051632498101746395, 0.051632498101746395, 0.051632498101746395, 0.051632498101746395, 0.051632498101746395, 0.05239179954441914, 0.05315110098709187, 0.05239179954441914, 0.051632498101746395, 0.4472285497342445, 0.051632498101746395, 0.05087319665907365, 0.04859529233105543, 0.04859529233105543, 0.04783599088838269, 0.04783599088838269, 0.04783599088838269, 0.04859529233105543, 0.04859529233105543, 0.04935459377372817, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Thr_synth_N.gap.json b/pfam_gap_rates/Thr_synth_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f203d571f1ad67373e0c35f93c27a3e30038b45c
--- /dev/null
+++ b/pfam_gap_rates/Thr_synth_N.gap.json
@@ -0,0 +1 @@
+{"family": "Thr_synth_N", "n_seqs": 1313, "length": 81, "gap_rates": [0.38994668697638996, 0.10205635948210205, 0.07616146230007616, 0.07387661843107388, 0.07311500380807312, 0.06473724295506474, 0.03427265803503427, 0.037319116527037316, 0.03427265803503427, 0.9246001523229246, 0.013709063214013708, 0.011424219345011425, 0.010662604722010662, 0.00913937547600914, 0.00913937547600914, 0.00913937547600914, 0.00913937547600914, 0.00913937547600914, 0.008377760853008377, 0.006854531607006854, 0.006854531607006854, 0.006854531607006854, 0.006854531607006854, 0.006092916984006093, 0.005331302361005331, 0.005331302361005331, 0.006092916984006093, 0.006092916984006093, 0.005331302361005331, 0.005331302361005331, 0.00456968773800457, 0.00456968773800457, 0.003808073115003808, 0.006854531607006854, 0.007616146230007616, 0.007616146230007616, 0.00456968773800457, 0.0030464584920030465, 0.0030464584920030465, 0.00913937547600914, 0.06397562833206398, 0.26656511805026656, 0.0357958872810358, 0.03198781416603199, 0.02361005331302361, 0.016755521706016754, 0.005331302361005331, 0.008377760853008377, 0.008377760853008377, 0.006092916984006093, 0.006092916984006093, 0.0030464584920030465, 0.0030464584920030465, 0.0030464584920030465, 0.0030464584920030465, 0.0030464584920030465, 0.0030464584920030465, 0.0030464584920030465, 0.0030464584920030465, 0.003808073115003808, 0.005331302361005331, 0.008377760853008377, 0.00913937547600914, 0.8324447829398325, 0.43335872048743335, 0.022086824067022087, 0.015232292460015232, 0.01827875095201828, 0.02284843869002285, 0.024371667936024372, 0.02817974105102818, 0.031226199543031227, 0.030464584920030464, 0.03274942878903275, 0.037319116527037316, 0.04036557501904037, 0.04341203351104341, 0.04722010662604722, 0.05864432597105865, 0.08149276466108149, 0.15308453922315307], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tmemb_cc2.gap.json b/pfam_gap_rates/Tmemb_cc2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1bca4b484f41ff09afecce88d7e2539ca85964c
--- /dev/null
+++ b/pfam_gap_rates/Tmemb_cc2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TolB_N.gap.json b/pfam_gap_rates/TolB_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..044f330868dd86559484298216e4155ad7751871
--- /dev/null
+++ b/pfam_gap_rates/TolB_N.gap.json
@@ -0,0 +1 @@
+{"family": "TolB_N", "n_seqs": 584, "length": 115, "gap_rates": [0.488013698630137, 0.1678082191780822, 0.11301369863013698, 0.09417808219178082, 0.08561643835616438, 0.0821917808219178, 0.06678082191780822, 0.05650684931506849, 0.04794520547945205, 0.039383561643835614, 0.030821917808219176, 0.023972602739726026, 0.02226027397260274, 0.015410958904109588, 0.011986301369863013, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.011986301369863013, 0.011986301369863013, 0.025684931506849314, 0.03595890410958904, 0.03424657534246575, 0.05136986301369863, 0.0821917808219178, 0.8595890410958904, 0.9366438356164384, 0.946917808219178, 0.9434931506849316, 0.8886986301369864, 0.6815068493150684, 0.589041095890411, 0.3732876712328767, 0.2928082191780822, 0.025684931506849314, 0.010273972602739725, 0.00684931506849315, 0.00684931506849315, 0.005136986301369863, 0.005136986301369863, 0.005136986301369863, 0.005136986301369863, 0.005136986301369863, 0.005136986301369863, 0.005136986301369863, 0.005136986301369863, 0.005136986301369863, 0.005136986301369863, 0.005136986301369863, 0.005136986301369863, 0.005136986301369863, 0.008561643835616438, 0.008561643835616438, 0.008561643835616438, 0.00684931506849315, 0.005136986301369863, 0.00684931506849315, 0.008561643835616438, 0.010273972602739725, 0.011986301369863013, 0.0136986301369863, 0.030821917808219176, 0.0547945205479452, 0.08732876712328767, 0.2363013698630137, 0.21232876712328766, 0.9178082191780822, 0.940068493150685, 0.5941780821917808, 0.06164383561643835, 0.03767123287671233, 0.0273972602739726, 0.02054794520547945, 0.0136986301369863, 0.008561643835616438, 0.008561643835616438, 0.010273972602739725, 0.010273972602739725, 0.008561643835616438, 0.010273972602739725, 0.011986301369863013, 0.010273972602739725, 0.008561643835616438, 0.008561643835616438, 0.008561643835616438, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.008561643835616438, 0.008561643835616438, 0.010273972602739725, 0.010273972602739725, 0.011986301369863013, 0.015410958904109588, 0.017123287671232876, 0.017123287671232876, 0.10102739726027397, 0.3236301369863014, 0.025684931506849314, 0.017123287671232876, 0.015410958904109588, 0.015410958904109588, 0.017123287671232876, 0.017123287671232876, 0.017123287671232876, 0.018835616438356163, 0.02226027397260274, 0.0273972602739726, 0.0410958904109589, 0.06506849315068493, 0.0958904109589041, 0.15753424657534246, 0.3287671232876712, 0.5941780821917808], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TraE.gap.json b/pfam_gap_rates/TraE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..065393d8165fc4802c36c091a436b17150f64a1b
--- /dev/null
+++ b/pfam_gap_rates/TraE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Trehalose_PPase.gap.json b/pfam_gap_rates/Trehalose_PPase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..998ee987b6a8bc4a5baf5be774b525824dd3b6ef
--- /dev/null
+++ b/pfam_gap_rates/Trehalose_PPase.gap.json
@@ -0,0 +1 @@
+{"family": "Trehalose_PPase", "n_seqs": 1731, "length": 267, "gap_rates": [0.35008665511265163, 0.22241478913922588, 0.19179664933564414, 0.18717504332755633, 0.18486424032351242, 0.18255343731946852, 0.18197573656845753, 0.18139803581744657, 0.17966493356441363, 0.17908723281340266, 0.17677642980935876, 0.17446562680531486, 0.1733102253032929, 0.30618139803581745, 0.2634315424610052, 0.15424610051993068, 0.13344887348353554, 0.11900635470826113, 0.10514153668399769, 0.09532062391681109, 0.0878105141536684, 0.07914500288850375, 0.07625649913344887, 0.07105719237435008, 0.07105719237435008, 0.06990179087232813, 0.07047949162333911, 0.07047949162333911, 0.07047949162333911, 0.06932409012131716, 0.06990179087232813, 0.06874638937030618, 0.06874638937030618, 0.0681686886192952, 0.07279029462738301, 0.06874638937030618, 0.3310225303292894, 0.28422876949740034, 0.06701328711727325, 0.06643558636626228, 0.06701328711727325, 0.06759098786828423, 0.06759098786828423, 0.0681686886192952, 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\ No newline at end of file
diff --git a/pfam_gap_rates/UCR_14kD.gap.json b/pfam_gap_rates/UCR_14kD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..95dc2c514bf5349dddb754096ec3d17ad726f2e8
--- /dev/null
+++ b/pfam_gap_rates/UCR_14kD.gap.json
@@ -0,0 +1 @@
+{"family": "UCR_14kD", "n_seqs": 331, "length": 106, "gap_rates": [0.8459214501510574, 0.6646525679758308, 0.525679758308157, 0.459214501510574, 0.39274924471299094, 0.3202416918429003, 0.27492447129909364, 0.23867069486404835, 0.21450151057401812, 0.19939577039274925, 0.1903323262839879, 0.17220543806646527, 0.1510574018126888, 0.13595166163141995, 0.1268882175226586, 0.11178247734138973, 0.09969788519637462, 0.09365558912386707, 0.0755287009063444, 0.7583081570996979, 0.7492447129909365, 0.0634441087613293, 0.06042296072507553, 0.05740181268882175, 0.04833836858006042, 0.04229607250755287, 0.027190332326283987, 0.02416918429003021, 0.021148036253776436, 0.021148036253776436, 0.021148036253776436, 0.021148036253776436, 0.01812688821752266, 0.01812688821752266, 0.01812688821752266, 0.22054380664652568, 0.8338368580060423, 0.015105740181268883, 0.015105740181268883, 0.015105740181268883, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.012084592145015106, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.9154078549848943, 0.9154078549848943, 0.9154078549848943, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.006042296072507553, 0.006042296072507553, 0.006042296072507553, 0.006042296072507553, 0.00906344410876133, 0.006042296072507553, 0.006042296072507553, 0.006042296072507553, 0.006042296072507553, 0.006042296072507553, 0.00906344410876133, 0.00906344410876133, 0.015105740181268883, 0.015105740181268883, 0.012084592145015106, 0.012084592145015106, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.012084592145015106, 0.015105740181268883, 0.01812688821752266, 0.0755287009063444, 0.02416918429003021, 0.02416918429003021, 0.02416918429003021, 0.02416918429003021, 0.02416918429003021, 0.03927492447129909, 0.054380664652567974, 0.054380664652567974, 0.054380664652567974, 0.06042296072507553, 0.0634441087613293, 0.06646525679758308, 0.06646525679758308, 0.0634441087613293, 0.0634441087613293, 0.07250755287009064, 0.0755287009063444, 0.08459214501510574, 0.08761329305135952, 0.08761329305135952, 0.08761329305135952, 0.09063444108761329, 0.11178247734138973, 0.1419939577039275, 0.44410876132930516], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0122.gap.json b/pfam_gap_rates/UPF0122.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aec5241fcfa5df78fe1ead8c2175b6dc635c1240
--- /dev/null
+++ b/pfam_gap_rates/UPF0122.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0122", "n_seqs": 659, "length": 99, "gap_rates": [0.48103186646433993, 0.2276176024279211, 0.16843702579666162, 0.13657056145675264, 0.09711684370257967, 0.06828528072837632, 0.054628224582701064, 0.0409711684370258, 0.030349013657056147, 0.027314112291350532, 0.024279210925644917, 0.02276176024279211, 0.02276176024279211, 0.02276176024279211, 0.018209408194233688, 0.015174506828528073, 0.015174506828528073, 0.009104704097116844, 0.004552352048558422, 0.0030349013657056147, 0.0015174506828528073, 0.0015174506828528073, 0.0015174506828528073, 0.0015174506828528073, 0.0015174506828528073, 0.0030349013657056147, 0.0030349013657056147, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0015174506828528073, 0.0015174506828528073, 0.0015174506828528073, 0.0015174506828528073, 0.0015174506828528073, 0.0015174506828528073, 0.0015174506828528073, 0.0015174506828528073, 0.0015174506828528073, 0.0015174506828528073, 0.0015174506828528073, 0.0015174506828528073, 0.0015174506828528073, 0.0015174506828528073, 0.0030349013657056147, 0.0030349013657056147, 0.0030349013657056147, 0.0030349013657056147, 0.006069802731411229, 0.006069802731411229, 0.007587253414264037, 0.007587253414264037, 0.009104704097116844, 0.009104704097116844, 0.010622154779969651, 0.012139605462822459, 0.013657056145675266, 0.015174506828528073, 0.021244309559939303, 0.025796661608497723, 0.028831562974203338, 0.03793626707132018, 0.0409711684370258, 0.0409711684370258, 0.05007587253414264, 0.05614567526555387, 0.0637329286798179, 0.06525037936267071, 0.06525037936267071, 0.06676783004552352, 0.06828528072837632, 0.07283763277693475, 0.07283763277693475, 0.07890743550834597, 0.0834597875569044, 0.09104704097116843, 0.09863429438543247, 0.1047040971168437, 0.11077389984825493, 0.1244309559939302, 0.13960546282245828, 0.16236722306525037, 0.18664643399089528, 0.22003034901365706, 0.26403641881638845, 0.3125948406676783, 0.37936267071320184, 0.5265553869499241, 0.582701062215478, 0.6525037936267072, 0.716236722306525, 0.7905918057663126, 0.8315629742033384, 0.8725341426403642, 0.9180576631259484, 0.9468892261001517], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0227.gap.json b/pfam_gap_rates/UPF0227.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f42849a6e8f468e68d3cc1570ba76fe8622e9064
--- /dev/null
+++ b/pfam_gap_rates/UPF0227.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Uds1.gap.json b/pfam_gap_rates/Uds1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bcb5e7da2c2d965da02b4ce99068d8bac12375d6
--- /dev/null
+++ b/pfam_gap_rates/Uds1.gap.json
@@ -0,0 +1 @@
+{"family": "Uds1", "n_seqs": 163, "length": 145, "gap_rates": [0.4723926380368098, 0.25153374233128833, 0.08588957055214724, 0.049079754601226995, 0.049079754601226995, 0.04294478527607362, 0.04294478527607362, 0.03680981595092025, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.024539877300613498, 0.018404907975460124, 0.018404907975460124, 0.018404907975460124, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.32515337423312884, 0.31901840490797545, 0.32515337423312884, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.24539877300613497, 0.03680981595092025, 0.03680981595092025, 0.04294478527607362, 0.03680981595092025, 0.0736196319018405, 0.7361963190184049, 0.7055214723926381, 0.803680981595092, 0.8282208588957055, 0.8466257668711656, 0.8650306748466258, 0.8895705521472392, 0.9202453987730062, 0.9325153374233128, 0.9325153374233128, 0.9263803680981595, 0.9141104294478528, 0.8834355828220859, 0.8466257668711656, 0.8343558282208589, 0.8159509202453987, 0.7914110429447853, 0.6809815950920245, 0.7055214723926381, 0.6993865030674846, 0.6503067484662577, 0.37423312883435583, 0.34355828220858897, 0.3312883435582822, 0.3128834355828221, 0.3067484662576687, 0.294478527607362, 0.294478527607362, 0.294478527607362, 0.24539877300613497, 0.10429447852760736, 0.024539877300613498, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.018404907975460124, 0.018404907975460124, 0.018404907975460124, 0.018404907975460124, 0.018404907975460124, 0.018404907975460124, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.049079754601226995, 0.11042944785276074, 0.38650306748466257, 0.6441717791411042], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Urm1.gap.json b/pfam_gap_rates/Urm1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a3673cf52a37963cdbbd6702b6374c883b6ac41a
--- /dev/null
+++ b/pfam_gap_rates/Urm1.gap.json
@@ -0,0 +1 @@
+{"family": "Urm1", "n_seqs": 292, "length": 110, "gap_rates": [0.8047945205479452, 0.22945205479452055, 0.1952054794520548, 0.18835616438356165, 0.18835616438356165, 0.17465753424657535, 0.1404109589041096, 0.11986301369863013, 0.11986301369863013, 0.11986301369863013, 0.11986301369863013, 0.11301369863013698, 0.11301369863013698, 0.11301369863013698, 0.11301369863013698, 0.9486301369863014, 0.1404109589041096, 0.11643835616438356, 0.13013698630136986, 0.1267123287671233, 0.10273972602739725, 0.10273972602739725, 0.0958904109589041, 0.0958904109589041, 0.08904109589041095, 0.0821917808219178, 0.5821917808219178, 0.9075342465753424, 0.928082191780822, 0.934931506849315, 0.9315068493150684, 0.9212328767123288, 0.6917808219178082, 0.541095890410959, 0.2808219178082192, 0.1678082191780822, 0.10273972602739725, 0.04452054794520548, 0.03767123287671233, 0.03424657534246575, 0.02054794520547945, 0.017123287671232876, 0.017123287671232876, 0.017123287671232876, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.023972602739726026, 0.0136986301369863, 0.017123287671232876, 0.0136986301369863, 0.030821917808219176, 0.928082191780822, 0.7226027397260274, 0.0136986301369863, 0.0136986301369863, 0.9178082191780822, 0.017123287671232876, 0.023972602739726026, 0.017123287671232876, 0.017123287671232876, 0.0136986301369863, 0.9178082191780822, 0.8493150684931506, 0.017123287671232876, 0.010273972602739725, 0.0136986301369863, 0.02054794520547945, 0.030821917808219176, 0.030821917808219176, 0.030821917808219176, 0.030821917808219176, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.06506849315068493, 0.06164383561643835, 0.06506849315068493, 0.06164383561643835, 0.05821917808219178, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06506849315068493, 0.07534246575342465, 0.0684931506849315, 0.0684931506849315, 0.0684931506849315, 0.07876712328767123, 0.0821917808219178, 0.0821917808219178, 0.08561643835616438, 0.08561643835616438, 0.08904109589041095, 0.09246575342465753], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Uso1_p115_C.gap.json b/pfam_gap_rates/Uso1_p115_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf8ce9471bd258dc8d66bb80b7c752dab06e12ff
--- /dev/null
+++ b/pfam_gap_rates/Uso1_p115_C.gap.json
@@ -0,0 +1 @@
+{"family": "Uso1_p115_C", "n_seqs": 212, "length": 188, "gap_rates": [0.8726415094339622, 0.6933962264150944, 0.5990566037735849, 0.5518867924528302, 0.45754716981132076, 0.4009433962264151, 0.37264150943396224, 0.33962264150943394, 0.2783018867924528, 0.25943396226415094, 0.23113207547169812, 0.20754716981132076, 0.19339622641509435, 0.16037735849056603, 0.1509433962264151, 0.13679245283018868, 0.13679245283018868, 0.12264150943396226, 0.11320754716981132, 0.10849056603773585, 0.10377358490566038, 0.08490566037735849, 0.08490566037735849, 0.07075471698113207, 0.0660377358490566, 0.07075471698113207, 0.07075471698113207, 0.07075471698113207, 0.07075471698113207, 0.07075471698113207, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.07547169811320754, 0.07075471698113207, 0.5707547169811321, 0.6933962264150944, 0.8254716981132075, 0.8726415094339622, 0.8962264150943396, 0.9009433962264151, 0.9481132075471698, 0.9481132075471698, 0.9481132075471698, 0.9339622641509434, 0.9009433962264151, 0.8867924528301887, 0.8584905660377359, 0.7264150943396226, 0.6839622641509434, 0.5141509433962265, 0.4669811320754717, 0.4481132075471698, 0.3160377358490566, 0.30660377358490565, 0.2971698113207547, 0.25, 0.2358490566037736, 0.22641509433962265, 0.2028301886792453, 0.0330188679245283, 0.03773584905660377, 0.02358490566037736, 0.018867924528301886, 0.018867924528301886, 0.014150943396226415, 0.009433962264150943, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.009433962264150943, 0.009433962264150943, 0.0047169811320754715, 0.7641509433962265, 0.7735849056603774, 0.7830188679245284, 0.8962264150943396, 0.9198113207547169, 0.9339622641509434, 0.9433962264150944, 0.9339622641509434, 0.9339622641509434, 0.910377358490566, 0.7924528301886793, 0.7783018867924528, 0.7688679245283019, 0.75, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.0330188679245283, 0.06132075471698113, 0.22641509433962265, 0.14622641509433962, 0.6367924528301887, 0.6839622641509434, 0.7028301886792453, 0.7924528301886793, 0.8018867924528302, 0.8207547169811321, 0.8301886792452831, 0.8537735849056604, 0.8773584905660378, 0.8867924528301887, 0.9150943396226415, 0.9245283018867925, 0.9481132075471698, 0.9339622641509434, 0.9150943396226415, 0.8915094339622641, 0.8820754716981132, 0.8773584905660378, 0.8537735849056604, 0.8254716981132075, 0.8066037735849056, 0.7924528301886793, 0.7122641509433962, 0.7028301886792453, 0.6462264150943396, 0.6226415094339622, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0047169811320754715, 0.0047169811320754715, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.018867924528301886, 0.05188679245283019, 0.7877358490566038, 0.7924528301886793, 0.9245283018867925, 0.9339622641509434, 0.9198113207547169, 0.7924528301886793, 0.7358490566037735, 0.05660377358490566, 0.07075471698113207, 0.08962264150943396, 0.08962264150943396, 0.08018867924528301, 0.09433962264150944, 0.13679245283018868, 0.16981132075471697, 0.19811320754716982, 0.23113207547169812, 0.2641509433962264, 0.3160377358490566, 0.3632075471698113, 0.4481132075471698, 0.5801886792452831, 0.6839622641509434], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/V1R.gap.json b/pfam_gap_rates/V1R.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f8eab7cd7e2492a156e738f0009902e10e0f2bf
--- /dev/null
+++ b/pfam_gap_rates/V1R.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/VGCC_alpha2.gap.json b/pfam_gap_rates/VGCC_alpha2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c9cc79a8eb13a0014ac07f2375a87b25ec3f7e65
--- /dev/null
+++ b/pfam_gap_rates/VGCC_alpha2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Vac14_Fab1_bd.gap.json b/pfam_gap_rates/Vac14_Fab1_bd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9c1a61dc0c215c528c84dbdcfb8e2ef9d1eae446
--- /dev/null
+++ b/pfam_gap_rates/Vac14_Fab1_bd.gap.json
@@ -0,0 +1 @@
+{"family": "Vac14_Fab1_bd", "n_seqs": 413, "length": 101, "gap_rates": [0.7142857142857143, 0.26150121065375304, 0.22033898305084745, 0.21307506053268765, 0.20581113801452786, 0.18886198547215496, 0.18159806295399517, 0.17433414043583534, 0.17433414043583534, 0.17191283292978207, 0.1694915254237288, 0.16464891041162227, 0.15738498789346247, 0.15738498789346247, 0.14043583535108958, 0.13559322033898305, 0.12590799031476999, 0.12106537530266344, 0.1089588377723971, 0.09685230024213075, 0.9200968523002422, 0.9394673123486683, 0.7723970944309927, 0.05811138014527845, 0.048426150121065374, 0.04116222760290557, 0.0387409200968523, 0.03389830508474576, 0.03389830508474576, 0.031476997578692496, 0.031476997578692496, 0.029055690072639227, 0.029055690072639227, 0.024213075060532687, 0.024213075060532687, 0.024213075060532687, 0.024213075060532687, 0.024213075060532687, 0.024213075060532687, 0.024213075060532687, 0.026634382566585957, 0.026634382566585957, 0.026634382566585957, 0.026634382566585957, 0.026634382566585957, 0.03631961259079903, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.029055690072639227, 0.029055690072639227, 0.029055690072639227, 0.026634382566585957, 0.029055690072639227, 0.031476997578692496, 0.031476997578692496, 0.031476997578692496, 0.031476997578692496, 0.031476997578692496, 0.031476997578692496, 0.031476997578692496, 0.026634382566585957, 0.029055690072639227, 0.026634382566585957, 0.029055690072639227, 0.04600484261501211, 0.048426150121065374, 0.9491525423728814, 0.06779661016949153, 0.06295399515738499, 0.024213075060532687, 0.024213075060532687, 0.021791767554479417, 0.021791767554479417, 0.021791767554479417, 0.021791767554479417, 0.021791767554479417, 0.026634382566585957, 0.026634382566585957, 0.029055690072639227, 0.0387409200968523, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.053268765133171914, 0.05569007263922518, 0.05084745762711865, 0.053268765133171914, 0.05811138014527845, 0.0774818401937046, 0.08958837772397095, 0.10653753026634383, 0.17675544794188863, 0.22033898305084745, 0.22760290556900725, 0.2397094430992736, 0.24455205811138014, 0.26634382566585957, 0.26634382566585957, 0.27602905569007263, 0.31476997578692495], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Virulence_RhuM.gap.json b/pfam_gap_rates/Virulence_RhuM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eac394d2722c40dd0323f4d83b7b44d414d629e2
--- /dev/null
+++ b/pfam_gap_rates/Virulence_RhuM.gap.json
@@ -0,0 +1 @@
+{"family": "Virulence_RhuM", "n_seqs": 796, "length": 260, "gap_rates": [0.4221105527638191, 0.2889447236180904, 0.271356783919598, 0.2701005025125628, 0.2650753768844221, 0.2550251256281407, 0.24371859296482412, 0.22989949748743718, 0.22110552763819097, 0.21733668341708542, 0.2135678391959799, 0.20854271356783918, 0.20477386934673367, 0.22613065326633167, 0.9484924623115578, 0.9484924623115578, 0.9484924623115578, 0.5188442211055276, 0.4962311557788945, 0.4585427135678392, 0.12437185929648241, 0.12060301507537688, 0.12060301507537688, 0.11934673366834171, 0.11683417085427136, 0.11683417085427136, 0.11557788944723618, 0.11557788944723618, 0.11306532663316583, 0.11306532663316583, 0.0992462311557789, 0.0992462311557789, 0.0992462311557789, 0.0992462311557789, 0.10050251256281408, 0.10175879396984924, 0.10175879396984924, 0.10175879396984924, 0.10175879396984924, 0.0992462311557789, 0.10050251256281408, 0.10175879396984924, 0.10301507537688442, 0.10552763819095477, 0.10804020100502512, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Vps23_core.gap.json b/pfam_gap_rates/Vps23_core.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..236465b0ae10783e92ce5fe3e9c02bdfb97d70ec
--- /dev/null
+++ b/pfam_gap_rates/Vps23_core.gap.json
@@ -0,0 +1 @@
+{"family": "Vps23_core", "n_seqs": 308, "length": 66, "gap_rates": [0.4383116883116883, 0.1590909090909091, 0.11038961038961038, 0.08116883116883117, 0.06493506493506493, 0.06168831168831169, 0.05194805194805195, 0.048701298701298704, 0.048701298701298704, 0.045454545454545456, 0.03571428571428571, 0.025974025974025976, 0.022727272727272728, 0.016233766233766232, 0.016233766233766232, 0.016233766233766232, 0.012987012987012988, 0.003246753246753247, 0.003246753246753247, 0.003246753246753247, 0.003246753246753247, 0.003246753246753247, 0.003246753246753247, 0.003246753246753247, 0.003246753246753247, 0.003246753246753247, 0.003246753246753247, 0.003246753246753247, 0.003246753246753247, 0.003246753246753247, 0.003246753246753247, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.003246753246753247, 0.9383116883116883, 0.9383116883116883, 0.003246753246753247, 0.003246753246753247, 0.003246753246753247, 0.006493506493506494, 0.003246753246753247, 0.006493506493506494, 0.006493506493506494, 0.00974025974025974, 0.00974025974025974, 0.00974025974025974, 0.00974025974025974, 0.025974025974025976, 0.03571428571428571, 0.04220779220779221, 0.05519480519480519, 0.05519480519480519, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.06168831168831169, 0.07142857142857142, 0.08766233766233766, 0.10714285714285714, 0.13636363636363635, 0.18831168831168832, 0.23376623376623376], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Vps4_C.gap.json b/pfam_gap_rates/Vps4_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2935cab315dc22051911a5cfffeccc2f3bbee57a
--- /dev/null
+++ b/pfam_gap_rates/Vps4_C.gap.json
@@ -0,0 +1 @@
+{"family": "Vps4_C", "n_seqs": 1345, "length": 66, "gap_rates": [0.7397769516728625, 0.7137546468401487, 0.7115241635687732, 0.708550185873606, 0.7092936802973978, 0.7078066914498141, 0.7033457249070632, 0.7003717472118959, 0.6981412639405205, 0.683271375464684, 0.6743494423791822, 0.6654275092936803, 0.6535315985130111, 0.6423791821561339, 0.6237918215613383, 0.5977695167286246, 0.5613382899628253, 0.5427509293680297, 0.521189591078067, 0.5100371747211896, 0.9323420074349442, 0.9479553903345725, 0.937546468401487, 0.9226765799256506, 0.49591078066914496, 0.44386617100371745, 0.42156133828996284, 0.43866171003717475, 0.3747211895910781, 0.2527881040892193, 0.09219330855018587, 0.9256505576208178, 0.022304832713754646, 0.008178438661710037, 0.0052044609665427505, 0.0044609665427509295, 0.010408921933085501, 0.010408921933085501, 0.010408921933085501, 0.011152416356877323, 0.012639405204460967, 0.012639405204460967, 0.012639405204460967, 0.011895910780669145, 0.011895910780669145, 0.011895910780669145, 0.011895910780669145, 0.011895910780669145, 0.011895910780669145, 0.012639405204460967, 0.013382899628252789, 0.012639405204460967, 0.013382899628252789, 0.01412639405204461, 0.01486988847583643, 0.01486988847583643, 0.016356877323420074, 0.016356877323420074, 0.016356877323420074, 0.023048327137546468, 0.02973977695167286, 0.03717472118959108, 0.04981412639405204, 0.21263940520446098, 0.27806691449814125, 0.30855018587360594], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WGG.gap.json b/pfam_gap_rates/WGG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..03130b32e7a32d3596e4f46167fe8cd60b19513e
--- /dev/null
+++ b/pfam_gap_rates/WGG.gap.json
@@ -0,0 +1 @@
+{"family": "WGG", "n_seqs": 317, "length": 97, "gap_rates": [0.3470031545741325, 0.21766561514195584, 0.12933753943217666, 0.08832807570977919, 0.07255520504731862, 0.06309148264984227, 0.06309148264984227, 0.06309148264984227, 0.05993690851735016, 0.05993690851735016, 0.05993690851735016, 0.05993690851735016, 0.050473186119873815, 0.050473186119873815, 0.04100946372239748, 0.03470031545741325, 0.022082018927444796, 0.022082018927444796, 0.01892744479495268, 0.015772870662460567, 0.015772870662460567, 0.03470031545741325, 0.03785488958990536, 0.028391167192429023, 0.04100946372239748, 0.04416403785488959, 0.04100946372239748, 0.022082018927444796, 0.01892744479495268, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.10725552050473186, 0.7728706624605678, 0.8391167192429022, 0.861198738170347, 0.8738170347003155, 0.8927444794952681, 0.9085173501577287, 0.9305993690851735, 0.9400630914826499, 0.9463722397476341, 0.9369085173501577, 0.9148264984227129, 0.9053627760252366, 0.8769716088328076, 0.8706624605678234, 0.8517350157728707, 0.807570977917981, 0.5867507886435331, 0.056782334384858045, 0.03470031545741325, 0.03470031545741325, 0.022082018927444796, 0.022082018927444796, 0.022082018927444796, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.022082018927444796, 0.022082018927444796, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.07255520504731862, 0.028391167192429023, 0.025236593059936908, 0.025236593059936908, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.031545741324921134, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.03785488958990536, 0.0473186119873817, 0.06624605678233439, 0.07886435331230283, 0.138801261829653, 0.5047318611987381], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WRC.gap.json b/pfam_gap_rates/WRC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f82ecf1fb55efec747807ba4b3c0c34a8c01ab36
--- /dev/null
+++ b/pfam_gap_rates/WRC.gap.json
@@ -0,0 +1 @@
+{"family": "WRC", "n_seqs": 445, "length": 43, "gap_rates": [0.3348314606741573, 0.12359550561797752, 0.0651685393258427, 0.03146067415730337, 0.01348314606741573, 0.006741573033707865, 0.0044943820224719105, 0.0044943820224719105, 0.0044943820224719105, 0.0044943820224719105, 0.0022471910112359553, 0.0, 0.0022471910112359553, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0022471910112359553, 0.0022471910112359553, 0.0022471910112359553, 0.0022471910112359553, 0.0022471910112359553, 0.0022471910112359553, 0.0022471910112359553, 0.0044943820224719105, 0.006741573033707865, 0.006741573033707865, 0.006741573033707865, 0.006741573033707865, 0.008988764044943821, 0.01348314606741573, 0.02247191011235955, 0.02247191011235955, 0.03146067415730337, 0.0449438202247191, 0.058426966292134834, 0.08314606741573034, 0.1303370786516854, 0.17752808988764046, 0.24044943820224718, 0.3595505617977528, 0.4853932584269663], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Whib.gap.json b/pfam_gap_rates/Whib.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e90d0ee480fa21f275b10dd4974ae9257293bf2a
--- /dev/null
+++ b/pfam_gap_rates/Whib.gap.json
@@ -0,0 +1 @@
+{"family": "Whib", "n_seqs": 408, "length": 71, "gap_rates": [0.27941176470588236, 0.27941176470588236, 0.2696078431372549, 0.2549019607843137, 0.23774509803921567, 0.2181372549019608, 0.12745098039215685, 0.125, 0.12990196078431374, 0.11519607843137254, 0.11029411764705882, 0.10784313725490197, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.10294117647058823, 0.10294117647058823, 0.09803921568627451, 0.12009803921568628, 0.2769607843137255, 0.6985294117647058, 0.7303921568627451, 0.8578431372549019, 0.8602941176470589, 0.7328431372549019, 0.7107843137254902, 0.6887254901960784, 0.05392156862745098, 0.04411764705882353, 0.04411764705882353, 0.04411764705882353, 0.0392156862745098, 0.03676470588235294, 0.031862745098039214, 0.031862745098039214, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.02696078431372549, 0.024509803921568627, 0.024509803921568627, 0.00980392156862745, 0.0024509803921568627, 0.0, 0.0, 0.0, 0.0024509803921568627, 0.0024509803921568627, 0.0, 0.014705882352941176, 0.012254901960784314, 0.01715686274509804, 0.0196078431372549, 0.01715686274509804, 0.024509803921568627, 0.014705882352941176, 0.01715686274509804, 0.01715686274509804, 0.01715686274509804, 0.01715686274509804, 0.01715686274509804, 0.12990196078431374, 0.14215686274509803, 0.16666666666666666, 0.17401960784313725, 0.17647058823529413, 0.17892156862745098, 0.19852941176470587, 0.2916666666666667, 0.3897058823529412], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/XFP_C.gap.json b/pfam_gap_rates/XFP_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96505d7ab4e6e523dff095ef3d4753efe4c43498
--- /dev/null
+++ b/pfam_gap_rates/XFP_C.gap.json
@@ -0,0 +1 @@
+{"family": "XFP_C", "n_seqs": 608, "length": 213, "gap_rates": [0.03782894736842105, 0.03125, 0.03125, 0.029605263157894735, 0.029605263157894735, 0.027960526315789474, 0.027960526315789474, 0.027960526315789474, 0.027960526315789474, 0.027960526315789474, 0.02631578947368421, 0.024671052631578948, 0.024671052631578948, 0.024671052631578948, 0.023026315789473683, 0.02138157894736842, 0.02138157894736842, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.01644736842105263, 0.01644736842105263, 0.01644736842105263, 0.018092105263157895, 0.018092105263157895, 0.018092105263157895, 0.01644736842105263, 0.018092105263157895, 0.018092105263157895, 0.9391447368421053, 0.8042763157894737, 0.05921052631578947, 0.0625, 0.07730263157894737, 0.01644736842105263, 0.01644736842105263, 0.018092105263157895, 0.018092105263157895, 0.018092105263157895, 0.018092105263157895, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.018092105263157895, 0.01644736842105263, 0.01644736842105263, 0.01644736842105263, 0.01644736842105263, 0.01644736842105263, 0.018092105263157895, 0.018092105263157895, 0.018092105263157895, 0.018092105263157895, 0.018092105263157895, 0.018092105263157895, 0.018092105263157895, 0.019736842105263157, 0.023026315789473683, 0.05098684210526316, 0.046052631578947366, 0.018092105263157895, 0.018092105263157895, 0.018092105263157895, 0.018092105263157895, 0.01644736842105263, 0.01644736842105263, 0.014802631578947368, 0.014802631578947368, 0.014802631578947368, 0.014802631578947368, 0.014802631578947368, 0.011513157894736841, 0.011513157894736841, 0.011513157894736841, 0.011513157894736841, 0.011513157894736841, 0.03618421052631579, 0.03618421052631579, 0.01644736842105263, 0.014802631578947368, 0.014802631578947368, 0.01644736842105263, 0.014802631578947368, 0.013157894736842105, 0.014802631578947368, 0.013157894736842105, 0.011513157894736841, 0.009868421052631578, 0.009868421052631578, 0.009868421052631578, 0.009868421052631578, 0.009868421052631578, 0.009868421052631578, 0.009868421052631578, 0.014802631578947368, 0.009868421052631578, 0.011513157894736841, 0.011513157894736841, 0.009868421052631578, 0.009868421052631578, 0.009868421052631578, 0.011513157894736841, 0.011513157894736841, 0.011513157894736841, 0.011513157894736841, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.2730263157894737, 0.01644736842105263, 0.011513157894736841, 0.011513157894736841, 0.011513157894736841, 0.011513157894736841, 0.011513157894736841, 0.013157894736842105, 0.013157894736842105, 0.014802631578947368, 0.014802631578947368, 0.01644736842105263, 0.01644736842105263, 0.018092105263157895, 0.018092105263157895, 0.018092105263157895, 0.018092105263157895, 0.018092105263157895, 0.018092105263157895, 0.018092105263157895, 0.018092105263157895, 0.018092105263157895, 0.018092105263157895, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.02138157894736842, 0.023026315789473683, 0.023026315789473683, 0.023026315789473683, 0.023026315789473683, 0.8766447368421053, 0.8865131578947368, 0.912828947368421, 0.9342105263157895, 0.8881578947368421, 0.8766447368421053, 0.8766447368421053, 0.023026315789473683, 0.03618421052631579, 0.07072368421052631, 0.2894736842105263, 0.9292763157894737, 0.21875, 0.05756578947368421, 0.044407894736842105, 0.04276315789473684, 0.03289473684210526, 0.9391447368421053, 0.03289473684210526, 0.03453947368421053, 0.03453947368421053, 0.03453947368421053, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03782894736842105, 0.03782894736842105, 0.03782894736842105, 0.047697368421052634, 0.0625, 0.08388157894736842, 0.10361842105263158, 0.11513157894736842, 0.13980263157894737, 0.16447368421052633], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Xpo1.gap.json b/pfam_gap_rates/Xpo1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5489cb9737841a2d3190beb2b71bb24d30559e44
--- /dev/null
+++ b/pfam_gap_rates/Xpo1.gap.json
@@ -0,0 +1 @@
+{"family": "Xpo1", "n_seqs": 1400, "length": 194, "gap_rates": [0.76, 0.3292857142857143, 0.1707142857142857, 0.10071428571428571, 0.08428571428571428, 0.08142857142857143, 0.07285714285714286, 0.06428571428571428, 0.05857142857142857, 0.05857142857142857, 0.056428571428571425, 0.055714285714285716, 0.054285714285714284, 0.054285714285714284, 0.05357142857142857, 0.05142857142857143, 0.05142857142857143, 0.05, 0.05, 0.23714285714285716, 0.22, 0.05714285714285714, 0.05285714285714286, 0.052142857142857144, 0.04357142857142857, 0.04357142857142857, 0.04214285714285714, 0.04428571428571428, 0.041428571428571426, 0.041428571428571426, 0.04071428571428572, 0.04, 0.039285714285714285, 0.04357142857142857, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.9435714285714286, 0.09214285714285714, 0.7878571428571428, 0.8307142857142857, 0.8628571428571429, 0.9235714285714286, 0.9414285714285714, 0.8914285714285715, 0.8414285714285714, 0.8192857142857143, 0.7821428571428571, 0.055, 0.05071428571428571, 0.07071428571428572, 0.065, 0.07142857142857142, 0.05071428571428571, 0.04357142857142857, 0.03642857142857143, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.035, 0.03857142857142857, 0.04285714285714286, 0.041428571428571426, 0.04428571428571428, 0.04214285714285714, 0.04928571428571429, 0.13214285714285715, 0.785, 0.7692857142857142, 0.24571428571428572, 0.21, 0.1692857142857143, 0.10071428571428571, 0.08428571428571428, 0.08, 0.08928571428571429, 0.08214285714285714, 0.07357142857142857, 0.07214285714285715, 0.9035714285714286, 0.07142857142857142, 0.07214285714285715, 0.07285714285714286, 0.07428571428571429, 0.07714285714285714, 0.07642857142857143, 0.07785714285714286, 0.07642857142857143, 0.07857142857142857, 0.08071428571428571, 0.08214285714285714, 0.7907142857142857, 0.08857142857142856, 0.08714285714285715, 0.08714285714285715, 0.08642857142857142, 0.08571428571428572, 0.085, 0.085, 0.085, 0.08714285714285715, 0.08857142857142856, 0.08857142857142856, 0.08785714285714286, 0.08928571428571429, 0.09, 0.11214285714285714, 0.11571428571428571, 0.14, 0.44, 0.5792857142857143, 0.7728571428571429, 0.8185714285714286, 0.8328571428571429, 0.8442857142857143, 0.8592857142857143, 0.8707142857142857, 0.9185714285714286, 0.9392857142857143, 0.9478571428571428, 0.95, 0.945, 0.935, 0.875, 0.8664285714285714, 0.8485714285714285, 0.8357142857142857, 0.8242857142857143, 0.8085714285714286, 0.74, 0.6935714285714286, 0.6771428571428572, 0.10214285714285715, 0.1, 0.09928571428571428, 0.09785714285714285, 0.09428571428571429, 0.095, 0.09571428571428571, 0.09642857142857143, 0.09857142857142857, 0.1, 0.10214285714285715, 0.10714285714285714, 0.10928571428571429, 0.11571428571428571, 0.11285714285714285, 0.11428571428571428, 0.8464285714285714, 0.9442857142857143, 0.8135714285714286, 0.12071428571428572, 0.12142857142857143, 0.12428571428571429, 0.12642857142857142, 0.12785714285714286, 0.13142857142857142, 0.13285714285714287, 0.13642857142857143, 0.145, 0.17142857142857143, 0.17285714285714285, 0.9378571428571428, 0.9171428571428571, 0.14785714285714285, 0.145, 0.14714285714285713, 0.1492857142857143, 0.15142857142857144, 0.8464285714285714, 0.15571428571428572, 0.15857142857142856, 0.16428571428571428, 0.18642857142857142, 0.8728571428571429, 0.9057142857142857, 0.8957142857142857, 0.8428571428571429, 0.21, 0.21857142857142858, 0.225, 0.23285714285714285, 0.2357142857142857, 0.9485714285714286, 0.945, 0.2557142857142857, 0.2592857142857143, 0.26571428571428574, 0.2671428571428571, 0.2735714285714286, 0.29, 0.34214285714285714, 0.4714285714285714], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YL1_C.gap.json b/pfam_gap_rates/YL1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dbd8684247b8769e739ab7cceabf6e68fed3539e
--- /dev/null
+++ b/pfam_gap_rates/YL1_C.gap.json
@@ -0,0 +1 @@
+{"family": "YL1_C", "n_seqs": 490, "length": 29, "gap_rates": [0.22244897959183674, 0.02040816326530612, 0.018367346938775512, 0.018367346938775512, 0.0163265306122449, 0.0163265306122449, 0.00816326530612245, 0.004081632653061225, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0020408163265306124, 0.004081632653061225, 0.004081632653061225, 0.004081632653061225, 0.004081632653061225, 0.01020408163265306, 0.014285714285714285, 0.022448979591836733, 0.04081632653061224, 0.10816326530612246, 0.33877551020408164], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YadA_stalk.gap.json b/pfam_gap_rates/YadA_stalk.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..871cca03a5257b4f205de4a9481244f0dc299d7f
--- /dev/null
+++ b/pfam_gap_rates/YadA_stalk.gap.json
@@ -0,0 +1 @@
+{"family": "YadA_stalk", "n_seqs": 786, "length": 24, "gap_rates": [0.19720101781170485, 0.061068702290076333, 0.017811704834605598, 0.006361323155216285, 0.001272264631043257, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6450381679389313, 0.6450381679389313, 0.6450381679389313, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005089058524173028, 0.035623409669211195], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YchF-GTPase_C.gap.json b/pfam_gap_rates/YchF-GTPase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2081634880ceed8152f6ab8c9bccad31d09d3cab
--- /dev/null
+++ b/pfam_gap_rates/YchF-GTPase_C.gap.json
@@ -0,0 +1 @@
+{"family": "YchF-GTPase_C", "n_seqs": 2663, "length": 84, "gap_rates": [0.039429215170859934, 0.01840030041306797, 0.012767555388659407, 0.012016522718738265, 0.012016522718738265, 0.011641006383777694, 0.010889973713856553, 0.010514457378895982, 0.010889973713856553, 0.010138941043935411, 0.007885843034171986, 0.007885843034171986, 0.007885843034171986, 0.008261359369132557, 0.007885843034171986, 0.007885843034171986, 0.007134810364250845, 0.006759294029290274, 0.00488171235448742, 0.00488171235448742, 0.00488171235448742, 0.005632745024408562, 0.005257228689447991, 0.005257228689447991, 0.005257228689447991, 0.005632745024408562, 0.005632745024408562, 0.005257228689447991, 0.005632745024408562, 0.00488171235448742, 0.00488171235448742, 0.00488171235448742, 0.00488171235448742, 0.00488171235448742, 0.005257228689447991, 0.00488171235448742, 0.00488171235448742, 0.00488171235448742, 0.00488171235448742, 0.00488171235448742, 0.00488171235448742, 0.00488171235448742, 0.004506196019526849, 0.004130679684566279, 0.004506196019526849, 0.005632745024408562, 0.005632745024408562, 0.005632745024408562, 0.005632745024408562, 0.005632745024408562, 0.0060082613593691325, 0.0060082613593691325, 0.011265490048817123, 0.007885843034171986, 0.007134810364250845, 0.006759294029290274, 0.006383777694329703, 0.007885843034171986, 0.010138941043935411, 0.00976342470897484, 0.007885843034171986, 0.008261359369132557, 0.008261359369132557, 0.008636875704093128, 0.009012392039053699, 0.00976342470897484, 0.00938790837401427, 0.00938790837401427, 0.00938790837401427, 0.010514457378895982, 0.010889973713856553, 0.011265490048817123, 0.011265490048817123, 0.011265490048817123, 0.011265490048817123, 0.011265490048817123, 0.011265490048817123, 0.011641006383777694, 0.011641006383777694, 0.012016522718738265, 0.012767555388659407, 0.01877581674802854, 0.10514457378895982, 0.2249342846413819], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YiaAB.gap.json b/pfam_gap_rates/YiaAB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..52c57a773e2c5e538ea4ae48ef29e9f0f6772810
--- /dev/null
+++ b/pfam_gap_rates/YiaAB.gap.json
@@ -0,0 +1 @@
+{"family": "YiaAB", "n_seqs": 309, "length": 54, "gap_rates": [0.05177993527508091, 0.03559870550161812, 0.025889967637540454, 0.025889967637540454, 0.019417475728155338, 0.019417475728155338, 0.016181229773462782, 0.012944983818770227, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.006472491909385114, 0.006472491909385114, 0.006472491909385114, 0.006472491909385114, 0.006472491909385114, 0.006472491909385114, 0.006472491909385114, 0.006472491909385114, 0.006472491909385114, 0.022653721682847898, 0.006472491909385114, 0.8996763754045307, 0.006472491909385114, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003236245954692557, 0.003236245954692557, 0.006472491909385114, 0.016181229773462782, 0.019417475728155338, 0.022653721682847898], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Yop-YscD_cpl.gap.json b/pfam_gap_rates/Yop-YscD_cpl.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e690e0384a5eb05ad0ad29ef535cbf1bab4e4dba
--- /dev/null
+++ b/pfam_gap_rates/Yop-YscD_cpl.gap.json
@@ -0,0 +1 @@
+{"family": "Yop-YscD_cpl", "n_seqs": 898, "length": 97, "gap_rates": [0.8518930957683741, 0.5489977728285078, 0.4710467706013363, 0.36414253897550114, 0.3307349665924276, 0.32405345211581293, 0.30846325167037864, 0.22494432071269488, 0.17037861915367483, 0.14253897550111358, 0.10133630289532294, 0.08351893095768374, 0.07015590200445435, 0.061247216035634745, 0.8964365256124721, 0.0467706013363029, 0.034521158129175944, 0.022271714922048998, 0.012249443207126948, 0.013363028953229399, 0.011135857461024499, 0.005567928730512249, 0.004454342984409799, 0.004454342984409799, 0.005567928730512249, 0.008908685968819599, 0.0077951002227171495, 0.9398663697104677, 0.005567928730512249, 0.004454342984409799, 0.0022271714922048997, 0.0011135857461024498, 0.0011135857461024498, 0.0011135857461024498, 0.0011135857461024498, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0011135857461024498, 0.8864142538975501, 0.015590200445434299, 0.008908685968819599, 0.005567928730512249, 0.008908685968819599, 0.0066815144766146995, 0.0033407572383073497, 0.004454342984409799, 0.044543429844097995, 0.026726057906458798, 0.017817371937639197, 0.011135857461024499, 0.012249443207126948, 0.014476614699331848, 0.015590200445434299, 0.013363028953229399, 0.013363028953229399, 0.013363028953229399, 0.015590200445434299, 0.01670378619153675, 0.017817371937639197, 0.01893095768374165, 0.017817371937639197, 0.022271714922048998, 0.8363028953229399, 0.022271714922048998, 0.036748329621380846, 0.0200445434298441, 0.9365256124721604, 0.7305122494432071, 0.0200445434298441, 0.0200445434298441, 0.0200445434298441, 0.022271714922048998, 0.02338530066815145, 0.025612472160356347, 0.02783964365256125, 0.0334075723830735, 0.036748329621380846, 0.042316258351893093, 0.05011135857461024, 0.06570155902004454, 0.07349665924276169, 0.0801781737193764, 0.09799554565701558, 0.12806236080178174, 0.35412026726057905, 0.6625835189309577, 0.9198218262806236], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YycH.gap.json b/pfam_gap_rates/YycH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e2fc6968bfff8f1cda42aa0d9d980d618292905d
--- /dev/null
+++ b/pfam_gap_rates/YycH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Zn_peptidase_2.gap.json b/pfam_gap_rates/Zn_peptidase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a89bc800eb487cb7d314399aa17ba86da717d273
--- /dev/null
+++ b/pfam_gap_rates/Zn_peptidase_2.gap.json
@@ -0,0 +1 @@
+{"family": "Zn_peptidase_2", "n_seqs": 713, "length": 226, "gap_rates": [0.4670406732117812, 0.15568022440392706, 0.07573632538569425, 0.05890603085553997, 0.04908835904628331, 0.04628330995792426, 0.043478260869565216, 0.043478260869565216, 0.04067321178120617, 0.04067321178120617, 0.03927068723702665, 0.03927068723702665, 0.0364656381486676, 0.0364656381486676, 0.0364656381486676, 0.0364656381486676, 0.0364656381486676, 0.0364656381486676, 0.0364656381486676, 0.03506311360448808, 0.03506311360448808, 0.03506311360448808, 0.033660589060308554, 0.030855539971949508, 0.029453015427769985, 0.029453015427769985, 0.029453015427769985, 0.030855539971949508, 0.030855539971949508, 0.02664796633941094, 0.02664796633941094, 0.028050490883590462, 0.043478260869565216, 0.03506311360448808, 0.02244039270687237, 0.02244039270687237, 0.02244039270687237, 0.021037868162692847, 0.021037868162692847, 0.019635343618513323, 0.019635343618513323, 0.019635343618513323, 0.019635343618513323, 0.0182328190743338, 0.0182328190743338, 0.0182328190743338, 0.0182328190743338, 0.0182328190743338, 0.0182328190743338, 0.0182328190743338, 0.030855539971949508, 0.016830294530154277, 0.0182328190743338, 0.016830294530154277, 0.016830294530154277, 0.016830294530154277, 0.0182328190743338, 0.028050490883590462, 0.019635343618513323, 0.0967741935483871, 0.061711079943899017, 0.04207573632538569, 0.021037868162692847, 0.019635343618513323, 0.021037868162692847, 0.021037868162692847, 0.019635343618513323, 0.019635343618513323, 0.019635343618513323, 0.0182328190743338, 0.0182328190743338, 0.0182328190743338, 0.016830294530154277, 0.016830294530154277, 0.016830294530154277, 0.016830294530154277, 0.0182328190743338, 0.0182328190743338, 0.016830294530154277, 0.019635343618513323, 0.0182328190743338, 0.019635343618513323, 0.015427769985974754, 0.016830294530154277, 0.016830294530154277, 0.015427769985974754, 0.016830294530154277, 0.016830294530154277, 0.016830294530154277, 0.015427769985974754, 0.015427769985974754, 0.016830294530154277, 0.016830294530154277, 0.016830294530154277, 0.015427769985974754, 0.015427769985974754, 0.015427769985974754, 0.015427769985974754, 0.016830294530154277, 0.016830294530154277, 0.016830294530154277, 0.015427769985974754, 0.016830294530154277, 0.016830294530154277, 0.016830294530154277, 0.016830294530154277, 0.0182328190743338, 0.0182328190743338, 0.015427769985974754, 0.014025245441795231, 0.014025245441795231, 0.012622720897615708, 0.012622720897615708, 0.012622720897615708, 0.011220196353436185, 0.011220196353436185, 0.011220196353436185, 0.011220196353436185, 0.012622720897615708, 0.012622720897615708, 0.012622720897615708, 0.011220196353436185, 0.011220196353436185, 0.009817671809256662, 0.009817671809256662, 0.008415147265077139, 0.008415147265077139, 0.009817671809256662, 0.009817671809256662, 0.009817671809256662, 0.009817671809256662, 0.009817671809256662, 0.9312762973352033, 0.009817671809256662, 0.011220196353436185, 0.011220196353436185, 0.030855539971949508, 0.025245441795231416, 0.023842917251051893, 0.028050490883590462, 0.6844319775596073, 0.788218793828892, 0.8555399719495091, 0.9467040673211781, 0.820476858345021, 0.7489481065918654, 0.6016830294530154, 0.4670406732117812, 0.012622720897615708, 0.009817671809256662, 0.009817671809256662, 0.009817671809256662, 0.009817671809256662, 0.009817671809256662, 0.008415147265077139, 0.011220196353436185, 0.009817671809256662, 0.009817671809256662, 0.009817671809256662, 0.009817671809256662, 0.009817671809256662, 0.009817671809256662, 0.009817671809256662, 0.009817671809256662, 0.009817671809256662, 0.009817671809256662, 0.014025245441795231, 0.012622720897615708, 0.012622720897615708, 0.011220196353436185, 0.011220196353436185, 0.009817671809256662, 0.011220196353436185, 0.011220196353436185, 0.011220196353436185, 0.9242636746143057, 0.012622720897615708, 0.012622720897615708, 0.012622720897615708, 0.012622720897615708, 0.012622720897615708, 0.012622720897615708, 0.014025245441795231, 0.016830294530154277, 0.016830294530154277, 0.037868162692847124, 0.02664796633941094, 0.014025245441795231, 0.014025245441795231, 0.0182328190743338, 0.023842917251051893, 0.03927068723702665, 0.015427769985974754, 0.014025245441795231, 0.014025245441795231, 0.015427769985974754, 0.016830294530154277, 0.016830294530154277, 0.0182328190743338, 0.0182328190743338, 0.0182328190743338, 0.0182328190743338, 0.0182328190743338, 0.0182328190743338, 0.0182328190743338, 0.0182328190743338, 0.0182328190743338, 0.019635343618513323, 0.021037868162692847, 0.023842917251051893, 0.023842917251051893, 0.023842917251051893, 0.025245441795231416, 0.025245441795231416, 0.025245441795231416, 0.02664796633941094, 0.02664796633941094, 0.02664796633941094, 0.02664796633941094, 0.02664796633941094, 0.028050490883590462, 0.030855539971949508, 0.03225806451612903, 0.047685834502103785, 0.09817671809256662, 0.29873772791023845], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/bZIP_Maf.gap.json b/pfam_gap_rates/bZIP_Maf.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ade9cd77793342c367026bd6045e0f704953eb07
--- /dev/null
+++ b/pfam_gap_rates/bZIP_Maf.gap.json
@@ -0,0 +1 @@
+{"family": "bZIP_Maf", "n_seqs": 446, "length": 94, "gap_rates": [0.547085201793722, 0.32062780269058294, 0.2713004484304933, 0.1860986547085202, 0.1591928251121076, 0.14573991031390135, 0.14573991031390135, 0.14573991031390135, 0.1367713004484305, 0.13452914798206278, 0.13228699551569506, 0.12780269058295965, 0.12556053811659193, 0.12331838565022421, 0.12780269058295965, 0.12556053811659193, 0.12780269058295965, 0.11659192825112108, 0.5224215246636771, 0.5201793721973094, 0.09641255605381166, 0.08968609865470852, 0.08295964125560538, 0.07847533632286996, 0.07174887892376682, 0.06278026905829596, 0.06502242152466367, 0.06053811659192825, 0.05829596412556054, 0.05829596412556054, 0.05605381165919283, 0.02914798206278027, 0.02466367713004484, 0.01569506726457399, 0.020179372197309416, 0.013452914798206279, 0.013452914798206279, 0.017937219730941704, 0.013452914798206279, 0.013452914798206279, 0.01569506726457399, 0.01569506726457399, 0.020179372197309416, 0.017937219730941704, 0.01569506726457399, 0.017937219730941704, 0.01569506726457399, 0.01569506726457399, 0.01569506726457399, 0.01569506726457399, 0.01569506726457399, 0.017937219730941704, 0.020179372197309416, 0.02242152466367713, 0.02466367713004484, 0.026905829596412557, 0.02914798206278027, 0.026905829596412557, 0.03139013452914798, 0.033632286995515695, 0.04035874439461883, 0.04035874439461883, 0.042600896860986545, 0.042600896860986545, 0.04932735426008968, 0.04932735426008968, 0.04932735426008968, 0.05829596412556054, 0.06053811659192825, 0.06053811659192825, 0.06053811659192825, 0.06502242152466367, 0.07174887892376682, 0.07399103139013453, 0.07399103139013453, 0.07399103139013453, 0.07623318385650224, 0.07847533632286996, 0.08295964125560538, 0.10538116591928251, 0.15695067264573992, 0.17937219730941703, 0.19730941704035873, 0.21300448430493274, 0.21748878923766815, 0.23766816143497757, 0.2556053811659193, 0.27802690582959644, 0.289237668161435, 0.32062780269058294, 0.36771300448430494, 0.4192825112107623, 0.49327354260089684, 0.8677130044843049], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/fn3_3.gap.json b/pfam_gap_rates/fn3_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..39cfc39b606783962685323eb420eb062c16e6dc
--- /dev/null
+++ b/pfam_gap_rates/fn3_3.gap.json
@@ -0,0 +1 @@
+{"family": "fn3_3", "n_seqs": 373, "length": 90, "gap_rates": [0.7613941018766756, 0.3726541554959786, 0.2386058981233244, 0.19571045576407506, 0.1742627345844504, 0.14745308310991956, 0.13941018766756033, 0.13404825737265416, 0.1260053619302949, 0.1260053619302949, 0.12332439678284182, 0.5227882037533512, 0.1260053619302949, 0.09919571045576407, 0.6514745308310992, 0.6648793565683646, 0.9276139410187667, 0.8766756032171582, 0.6621983914209115, 0.646112600536193, 0.08579088471849866, 0.09919571045576407, 0.08847184986595175, 0.08310991957104558, 0.08042895442359249, 0.08310991957104558, 0.07238605898123325, 0.8552278820375335, 0.8659517426273459, 0.8471849865951743, 0.38873994638069703, 0.38605898123324395, 0.045576407506702415, 0.04289544235924933, 0.032171581769437, 0.010723860589812333, 0.010723860589812333, 0.00804289544235925, 0.00804289544235925, 0.00804289544235925, 0.010723860589812333, 0.0777479892761394, 0.005361930294906166, 0.8847184986595175, 0.002680965147453083, 0.002680965147453083, 0.002680965147453083, 0.002680965147453083, 0.002680965147453083, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005361930294906166, 0.005361930294906166, 0.002680965147453083, 0.005361930294906166, 0.024128686327077747, 0.029490616621983913, 0.032171581769437, 0.045576407506702415, 0.03753351206434316, 0.03753351206434316, 0.938337801608579, 0.938337801608579, 0.938337801608579, 0.3646112600536193, 0.938337801608579, 0.546916890080429, 0.3485254691689008, 0.05093833780160858, 0.05093833780160858, 0.05093833780160858, 0.05093833780160858, 0.05361930294906166, 0.06166219839142091, 0.06166219839142091, 0.08310991957104558, 0.10455764075067024, 0.14745308310991956, 0.20107238605898123, 0.3136729222520107, 0.8310991957104558], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/mTERF.gap.json b/pfam_gap_rates/mTERF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b9560284832cee2a5e0e6cbc977adb6f45d4002a
--- /dev/null
+++ b/pfam_gap_rates/mTERF.gap.json
@@ -0,0 +1 @@
+{"family": "mTERF", "n_seqs": 2040, "length": 351, "gap_rates": [0.8490196078431372, 0.8009803921568628, 0.7715686274509804, 0.7661764705882353, 0.7627450980392156, 0.7617647058823529, 0.759313725490196, 0.7588235294117647, 0.7578431372549019, 0.7676470588235295, 0.7651960784313725, 0.7647058823529411, 0.7490196078431373, 0.7490196078431373, 0.7485294117647059, 0.7426470588235294, 0.7426470588235294, 0.7387254901960785, 0.7362745098039216, 0.7357843137254902, 0.7348039215686275, 0.7348039215686275, 0.7328431372549019, 0.7264705882352941, 0.7259803921568627, 0.7245098039215686, 0.7245098039215686, 0.7215686274509804, 0.7215686274509804, 0.7549019607843137, 0.7176470588235294, 0.703921568627451, 0.7034313725490197, 0.692156862745098, 0.6872549019607843, 0.6799019607843138, 0.6730392156862746, 0.6769607843137255, 0.6676470588235294, 0.6651960784313725, 0.6642156862745098, 0.663235294117647, 0.6637254901960784, 0.6622549019607843, 0.6607843137254902, 0.6612745098039216, 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\ No newline at end of file
diff --git a/pfam_gap_rates/sCache_3_3.gap.json b/pfam_gap_rates/sCache_3_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..65b3f61561ffb07718e3969e1190b90fc1521f1e
--- /dev/null
+++ b/pfam_gap_rates/sCache_3_3.gap.json
@@ -0,0 +1 @@
+{"family": "sCache_3_3", "n_seqs": 393, "length": 125, "gap_rates": [0.6870229007633588, 0.27989821882951654, 0.23918575063613232, 0.21119592875318066, 0.11704834605597965, 0.07124681933842239, 0.035623409669211195, 0.030534351145038167, 0.022900763358778626, 0.020356234096692113, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.030534351145038167, 0.7709923664122137, 0.7811704834605598, 0.7837150127226463, 0.816793893129771, 0.8905852417302799, 0.8371501272264631, 0.7862595419847328, 0.7811704834605598, 0.7760814249363868, 0.7709923664122137, 0.01272264631043257, 0.9363867684478372, 0.8473282442748091, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.806615776081425, 0.8091603053435115, 0.9465648854961832, 0.8091603053435115, 0.8040712468193384, 0.007633587786259542, 0.010178117048346057, 0.005089058524173028, 0.002544529262086514, 0.002544529262086514, 0.002544529262086514, 0.002544529262086514, 0.002544529262086514, 0.002544529262086514, 0.01272264631043257, 0.022900763358778626, 0.2010178117048346, 0.043256997455470736, 0.03307888040712468, 0.03816793893129771, 0.022900763358778626, 0.010178117048346057, 0.01272264631043257, 0.01272264631043257, 0.010178117048346057, 0.007633587786259542, 0.005089058524173028, 0.005089058524173028, 0.007633587786259542, 0.005089058524173028, 0.7506361323155216, 0.005089058524173028, 0.010178117048346057, 0.005089058524173028, 0.007633587786259542, 0.007633587786259542, 0.04834605597964377, 0.010178117048346057, 0.002544529262086514, 0.002544529262086514, 0.005089058524173028, 0.002544529262086514, 0.8524173027989822, 0.002544529262086514, 0.007633587786259542, 0.005089058524173028, 0.005089058524173028, 0.005089058524173028, 0.002544529262086514, 0.005089058524173028, 0.005089058524173028, 0.002544529262086514, 0.002544529262086514, 0.002544529262086514, 0.002544529262086514, 0.005089058524173028, 0.005089058524173028, 0.005089058524173028, 0.005089058524173028, 0.005089058524173028, 0.005089058524173028, 0.005089058524173028, 0.005089058524173028, 0.007633587786259542, 0.06615776081424936, 0.01272264631043257, 0.015267175572519083, 0.017811704834605598, 0.926208651399491, 0.015267175572519083, 0.015267175572519083, 0.010178117048346057, 0.010178117048346057, 0.010178117048346057, 0.010178117048346057, 0.015267175572519083, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.020356234096692113, 0.04071246819338423, 0.06361323155216285, 0.089058524173028, 0.1297709923664122, 0.1628498727735369, 0.23155216284987276, 0.35368956743002544, 0.5903307888040712, 0.8346055979643766], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/uDENN.gap.json b/pfam_gap_rates/uDENN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6330c3117c2ea16e60337d60ff41554d4647b8fc
--- /dev/null
+++ b/pfam_gap_rates/uDENN.gap.json
@@ -0,0 +1 @@
+{"family": "uDENN", "n_seqs": 890, "length": 96, "gap_rates": [0.45393258426966293, 0.24044943820224718, 0.13707865168539327, 0.11685393258426967, 0.11235955056179775, 0.10449438202247191, 0.10449438202247191, 0.10112359550561797, 0.1, 0.9483146067415731, 0.9471910112359551, 0.12022471910112359, 0.23595505617977527, 0.21348314606741572, 0.19325842696629214, 0.898876404494382, 0.9449438202247191, 0.9370786516853933, 0.8359550561797753, 0.25617977528089886, 0.15617977528089888, 0.13258426966292136, 0.9235955056179775, 0.2651685393258427, 0.17865168539325843, 0.11910112359550562, 0.04269662921348315, 0.8393258426966292, 0.8629213483146068, 0.9056179775280899, 0.9146067415730337, 0.8943820224719101, 0.8438202247191011, 0.7426966292134831, 0.030337078651685393, 0.02696629213483146, 0.017977528089887642, 0.010112359550561797, 0.010112359550561797, 0.006741573033707865, 0.0056179775280898875, 0.0056179775280898875, 0.006741573033707865, 0.017977528089887642, 0.4898876404494382, 0.7966292134831461, 0.8629213483146068, 0.8786516853932584, 0.8876404494382022, 0.8898876404494382, 0.895505617977528, 0.9134831460674158, 0.8966292134831461, 0.8910112359550562, 0.8887640449438202, 0.8808988764044944, 0.8741573033707866, 0.8539325842696629, 0.7651685393258427, 0.49550561797752807, 0.34606741573033706, 0.3146067415730337, 0.45393258426966293, 0.36292134831460676, 0.2651685393258427, 0.22696629213483147, 0.16292134831460675, 0.13370786516853933, 0.15842696629213482, 0.13258426966292136, 0.09887640449438202, 0.10337078651685393, 0.07191011235955057, 0.010112359550561797, 0.011235955056179775, 0.008988764044943821, 0.008988764044943821, 0.008988764044943821, 0.008988764044943821, 0.010112359550561797, 0.010112359550561797, 0.019101123595505618, 0.014606741573033709, 0.01348314606741573, 0.014606741573033709, 0.014606741573033709, 0.01348314606741573, 0.016853932584269662, 0.8865168539325843, 0.019101123595505618, 0.02247191011235955, 0.024719101123595506, 0.043820224719101124, 0.04719101123595506, 0.19662921348314608, 0.47191011235955055], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/vATP-synt_AC39.gap.json b/pfam_gap_rates/vATP-synt_AC39.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0447cd254d09e0da3e342c9d390fc1aab6bc52e6
--- /dev/null
+++ b/pfam_gap_rates/vATP-synt_AC39.gap.json
@@ -0,0 +1 @@
+{"family": "vATP-synt_AC39", "n_seqs": 856, "length": 378, "gap_rates": [0.5116822429906542, 0.25116822429906543, 0.18691588785046728, 0.16238317757009346, 0.1425233644859813, 0.13901869158878505, 0.13551401869158877, 0.13200934579439252, 0.12850467289719625, 0.1261682242990654, 0.125, 0.1261682242990654, 0.125, 0.125, 0.12266355140186916, 0.12032710280373832, 0.11799065420560748, 0.11682242990654206, 0.11799065420560748, 0.11565420560747663, 0.1133177570093458, 0.12733644859813084, 0.11565420560747663, 0.11565420560747663, 0.1658878504672897, 0.1133177570093458, 0.10747663551401869, 0.10046728971962617, 0.10514018691588785, 0.10514018691588785, 0.10397196261682243, 0.10514018691588785, 0.10163551401869159, 0.09929906542056074, 0.17406542056074767, 0.8504672897196262, 0.11448598130841121, 0.11448598130841121, 0.11682242990654206, 0.10864485981308411, 0.10397196261682243, 0.102803738317757, 0.1705607476635514, 0.26401869158878505, 0.20093457943925233, 0.19976635514018692, 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\ No newline at end of file
diff --git a/pfam_gap_rates/zf-CW.gap.json b/pfam_gap_rates/zf-CW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ee1ef4215fe7dd0831642da93cecad4a925c584
--- /dev/null
+++ b/pfam_gap_rates/zf-CW.gap.json
@@ -0,0 +1 @@
+{"family": "zf-CW", "n_seqs": 649, "length": 58, "gap_rates": [0.38366718027734975, 0.04160246533127889, 0.0061633281972265025, 0.0061633281972265025, 0.004622496147919877, 0.0030816640986132513, 0.8782742681047766, 0.8751926040061633, 0.0030816640986132513, 0.0030816640986132513, 0.0015408320493066256, 0.0015408320493066256, 0.0015408320493066256, 0.0015408320493066256, 0.0015408320493066256, 0.0015408320493066256, 0.0015408320493066256, 0.0015408320493066256, 0.0015408320493066256, 0.24345146379044685, 0.7257318952234206, 0.20184899845916796, 0.1617873651771957, 0.1386748844375963, 0.06317411402157165, 0.04930662557781202, 0.5315870570107858, 0.07395993836671803, 0.8412942989214176, 0.8582434514637904, 0.9044684129429892, 0.8505392912172574, 0.8335901386748844, 0.08782742681047766, 0.8952234206471494, 0.0030816640986132513, 0.0030816640986132513, 0.0030816640986132513, 0.0030816640986132513, 0.0030816640986132513, 0.004622496147919877, 0.007704160246533128, 0.01386748844375963, 0.8582434514637904, 0.4206471494607088, 0.24499229583975346, 0.1386748844375963, 0.11710323574730354, 0.10015408320493066, 0.05546995377503852, 0.04930662557781202, 0.046224961479198766, 0.05084745762711865, 0.053929121725731895, 0.061633281972265024, 0.08936825885978428, 0.1633281972265023, 0.9291217257318952], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-H2C2.gap.json b/pfam_gap_rates/zf-H2C2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d82d86004c20153ad21ebd17a6bb13c0f9088c0b
--- /dev/null
+++ b/pfam_gap_rates/zf-H2C2.gap.json
@@ -0,0 +1 @@
+{"family": "zf-H2C2", "n_seqs": 416, "length": 40, "gap_rates": [0.6706730769230769, 0.6418269230769231, 0.46875, 0.12259615384615384, 0.009615384615384616, 0.004807692307692308, 0.004807692307692308, 0.002403846153846154, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.014423076923076924, 0.0, 0.0, 0.0, 0.9423076923076923, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002403846153846154, 0.002403846153846154, 0.007211538461538462, 0.007211538461538462, 0.009615384615384616, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.1875], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-Mss51.gap.json b/pfam_gap_rates/zf-Mss51.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..31044b27ecce126542fc3289fed91b93c3216670
--- /dev/null
+++ b/pfam_gap_rates/zf-Mss51.gap.json
@@ -0,0 +1 @@
+{"family": "zf-Mss51", "n_seqs": 127, "length": 78, "gap_rates": [0.5669291338582677, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.25196850393700787, 0.2440944881889764, 0.2440944881889764, 0.2440944881889764, 0.33070866141732286, 0.2992125984251969, 0.41732283464566927, 0.4645669291338583, 0.47244094488188976, 0.5511811023622047, 0.5669291338582677, 0.5748031496062992, 0.5748031496062992, 0.6062992125984252, 0.6929133858267716, 0.889763779527559, 0.6614173228346457, 0.5826771653543307, 0.5748031496062992, 0.5748031496062992, 0.5590551181102362, 0.47244094488188976, 0.47244094488188976, 0.4566929133858268, 0.4094488188976378, 0.2125984251968504, 0.023622047244094488, 0.015748031496062992, 0.015748031496062992, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.0, 0.0, 0.0, 0.0, 0.0, 0.28346456692913385, 0.0, 0.0, 0.0, 0.8267716535433071, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.023622047244094488, 0.031496062992125984], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-UBP.gap.json b/pfam_gap_rates/zf-UBP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9252867e09ef0f2e396ae72878b1685bdf10541b
--- /dev/null
+++ b/pfam_gap_rates/zf-UBP.gap.json
@@ -0,0 +1 @@
+{"family": "zf-UBP", "n_seqs": 1853, "length": 85, "gap_rates": [0.13437668645439826, 0.1052347544522396, 0.09066378845116028, 0.07555315704263357, 0.07393416082029142, 0.10037776578521317, 0.08580679978413383, 0.9093362115488397, 0.7781975175391257, 0.05612520237452779, 0.042093901780895844, 0.02914193200215866, 0.02644360496492175, 0.019427954668105773, 0.9044792228818133, 0.9087965461413924, 0.908256880733945, 0.9044792228818133, 0.019967620075553156, 0.019427954668105773, 0.016189962223421478, 0.012951969778737183, 0.0124123043712898, 0.010793308148947653, 0.010793308148947653, 0.008094981111710739, 0.007015650296815974, 0.007555315704263357, 0.011872638963842417, 0.11279007015650297, 0.10469508904479223, 0.7868321640582838, 0.7965461413923367, 0.8121964382083109, 0.7970858067997841, 0.7879114948731786, 0.7765785213167836, 0.04641122504047491, 0.8710199676200756, 0.03831624392876417, 0.004856988667026443, 0.0032379924446842958, 0.0021586616297895305, 0.0021586616297895305, 0.002698327037236913, 0.0021586616297895305, 0.002698327037236913, 0.9400971397733405, 0.0032379924446842958, 0.005396654074473826, 0.0032379924446842958, 0.9152725310307609, 0.9395574743658931, 0.9114948731786292, 0.004856988667026443, 0.0059363194819212085, 0.0064759848893685915, 0.0064759848893685915, 0.007015650296815974, 0.007015650296815974, 0.009713977334052886, 0.011872638963842417, 0.01672962763086886, 0.019427954668105773, 0.022126281705342688, 0.7101996762007555, 0.8073394495412844, 0.8855909336211549, 0.8073394495412844, 0.8051807879114948, 0.7042633567188343, 0.0248246087425796, 0.028062601187263895, 0.028062601187263895, 0.02914193200215866, 0.03184025903939557, 0.042093901780895844, 0.06368051807879115, 0.08526713437668645, 0.10793308148947653, 0.1305990286022666, 0.1705342687533729, 0.2611980572045332, 0.4803022126281705, 0.6718834322719913], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file