diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot1/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot1/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
new file mode 100644
index 0000000000000000000000000000000000000000..208f00fb86a8394437cddb1d24b8bfdd66977bc1
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot1/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
@@ -0,0 +1,2471 @@
+NAME	B cell	DC	Monocyte	NK cell	Other	T cell
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+ENSG00000259207	3.84010224368077280	2.12727625257301067	5.01861744275253940	9.78734622144112798	1174.20157114041512614	2.89286390308537111
+ENSG00000259330	1.00000000000000000	13.36232730549967762	5.32948866534860333	11.79217435264852121	157.75981284977677888	1.94643195154268578
+ENSG00000260314	1.00000000000000000	24.63903728940407944	3.82869427472280277	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000263961	18.53828657952282200	92.34862762685635573	1.00000000000000000	1.00000000000000000	14.25833644642752596	1.00000000000000000
+ENSG00000264522	3.70709258256632168	1.00000000000000000	1.71418368804456467	10.41033373630449432	1.00000000000000000	8.42755406490360137
+ENSG00000265817	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	7.61786319581971050
+ENSG00000266028	3.15176755295455946	38.63517923524888431	62.34713370223806805	8.37589103738628893	2.11365355756471374	10.18379473892744258
+ENSG00000266074	1.00000000000000000	14.53099697219457198	5.02635167538435113	1.00000000000000000	1.56779468544174838	1.00000000000000000
+ENSG00000266412	54.93552825087164848	117.50562915191972024	138.78139497464638907	78.77709311843933904	2512.07713871137548267	47.21741678823102006
+ENSG00000267060	1.00000000000000000	1.00000000000000000	2.16063138347261496	1.00000000000000000	47.52990151959973986	1.00000000000000000
+ENSG00000267710	1.00000000000000000	2.65633359680823178	1.00000000000000000	4.84469558392146116	1.00000000000000000	7.64010624169984798
+ENSG00000269404	212.27222654456517148	191.98802878823698848	1.00000000000000000	2.15287064791330351	1.47924853829196068	1.00000000000000000
+ENSG00000271447	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	2.24564025909318321	14.77269192359301719
+ENSG00000271503	34.75240659884479300	20.08007041703983120	50.20069496261299946	3607.44304429416069979	3855.49700796978140716	706.75949065525003334
+ENSG00000271605	8.83895055909669658	33.09535795972691119	15.97727511228297814	1.00000000000000000	1.47924853829195957	1.00000000000000000
+ENSG00000272398	105.63554783775376222	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000272602	20.56564086703862770	2.17519534462151931	8.27428681390783360	26.54322453019230466	5.52237489553193228	1.00000000000000000
+ENSG00000273749	4.88863472501475638	31.58680088955222942	71.27009920079866845	1.00000000000000000	16.60921203206563135	2.67780515692736909
+ENSG00000273802	2.09385254867644033	1.98849783914372091	5.23508166321370982	1.00000000000000000	32.69924337950708804	1.00000000000000000
+ENSG00000275023	26.52272584190772875	21.89740556916384406	9.63467738603432622	93.95421755033527234	5.87532828556670683	61.27546477834609107
+ENSG00000275302	1.00000000000000000	2.16567642454401277	136.82058746607415856	785.33378490073300782	5.47717252786620623	52.46496717767970352
+ENSG00000275713	1.54692627433822016	2.27406388156302164	9.21749659954217471	5.79616452329539822	69.17833438279446057	3.27998176014591269
+ENSG00000276043	1.00000000000000000	1.00000000000000000	1.00000000000000000	8.19914938200974674	1.00000000000000000	1.00000000000000000
+ENSG00000276070	1.00000000000000000	25.80088792008432819	69.20712727747016402	52.06541640630059931	1.00000000000000000	13.45832061884707720
+ENSG00000276085	1.00000000000000000	61.67450136583411080	214.18171589290332690	4.83729854182655750	3.80112044817930084	1.00000000000000000
+ENSG00000276644	1.00000000000000000	37.53274231039199549	23.96282320847655001	3.49625561657513817	12.81176356289139129	1.00000000000000000
+ENSG00000277075	1.58837373499646928	4.63784259560251044	1.00000000000000000	4.73173321787251489	67.01988999715150896	2.84229918938835979
+ENSG00000277443	98.71038859567589441	48.47449027673750521	172.92605378380321213	1.00000000000000000	3.00266590964636348	1.00000000000000000
+ENSG00000277586	2.03691414350891753	1.00000000000000000	1.00000000000000000	2.79018976011457243	2.38883558577240551	7.09583882951480671
+ENSG00000277632	1.00000000000000000	100.61905476648854574	418.94095909077037732	149.19251270027791634	6.18732332920979378	7.73797778666547575
+ENSG00000277972	20.08095696175174538	51.16377048095340285	76.70662661357853551	195.18650849595340446	16.82229131882141360	52.91208655855601251
+ENSG00000278828	3.08855472013367116	2.22833071084726209	9.91074108309552138	12.26558257618393100	635.32083501157899263	1.94643195154268578
+ENSG00000283154	1.00000000000000000	18.09552507296133328	18.62435510684702322	1.00000000000000000	3.00206752790994091	1.00000000000000000
+ENSG00000283632	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	24.00079497365391745	3.35686918708569548
+ENSG00000284194	25.75753262218262662	67.70417570971385146	147.13082563392333668	8.77690985726748885	3.05472400792254906	13.08768530232944549
+ENSG00000284691	40.69786206358858749	12.23928567844510162	1.92626898851426809	18.89071857787006437	3.59126746890394122	37.00467606543135446
+ENSG00000284976	3.04331834899877407	1.74884827135865040	3.11739942517379998	1.00000000000000000	59.38792325939380845	1.94643195154268578
+ENSG00000285043	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	24.91079337761710377	1.00000000000000000
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot1/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot1/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e52e2032a16c79ccce64c632dfc133eccc9fefc3
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot1/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
@@ -0,0 +1,6 @@
+B cell	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+DC	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+Monocyte	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+NK cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2
+Other	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2
+T cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot1/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot1/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0c98ee18d50c8226a50bcd367256db5a7de76235
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot1/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt
@@ -0,0 +1,2471 @@
+GeneSymbol	B cell	DC	Monocyte	NK cell	Other	T cell
+ENSG00000001561	1.11312125206559731	1.70276729814118366	1.02597920355371253	25.63074577683779864	1.78063698276415883	5.83365190793959787
+ENSG00000002587	15.91760671970780372	16.81877957951456182	1.94480242085292954	0.00000000000000000	0.00000000000000000	0.88565463244905773
+ENSG00000002933	2.01909889853171931	14.49384849991481516	113.59636251510200111	1.48001086220046552	0.12776399963403445	0.00000000000000000
+ENSG00000003249	11.28132227828053402	0.00000000000000000	0.00000000000000000	0.00000000000000000	2.13858803863659119	2.20762632913973134
+ENSG00000003436	0.13610998122375115	14.56587363439590455	13.38935072689420025	5.07369322372908460	124.43386481384202114	5.86684852137417234
+ENSG00000004468	39.72987197507519141	10.97216173685483120	4.62865463495615437	130.75853586555905395	5.92165667801548068	3.85434182069370257
+ENSG00000004939	26.15648468286566342	22.08902807583252681	11.59874296724172282	21.97691836164535317	662.71709225975428126	11.03920704568026601
+ENSG00000005102	0.20387240127173875	0.00000000000000000	0.00083904903452869	0.00000000000000000	0.00000000000000000	5.34562853412517747
+ENSG00000005243	0.39366948494147580	0.21351452512120683	1.65191037124504225	10.44249432721796644	0.06019686159163277	0.34550009070332816
+ENSG00000005249	11.97428268643402660	2.48160026998841099	81.23122638588685618	51.18837083851674663	1754.95033484566715742	62.35645029852185672
+ENSG00000005379	2.09975129951052386	19.72332784087817004	23.83899706248999095	36.40494880976925884	2.13468709392863998	2.41508432320250721
+ENSG00000005469	3.54452799165289845	3.03346232573933117	0.00000000000000000	17.28312360027246086	1.65224208147200224	4.47841382214308315
+ENSG00000005471	24.11730393541471074	2.25156461926377904	0.00000000000000000	0.03045714288355466	0.00000000000000000	0.00000000000000000
+ENSG00000005844	34.61422052241605485	77.63855284963797487	194.51216879338085164	247.53722103186589720	38.09017529337587149	162.51747341787060464
+ENSG00000005961	7.65645094930456693	0.00000000000000000	23.67900149487343597	16.08326417504254380	709.21211339366163884	18.15789896539398995
+ENSG00000006025	4.22553758313484007	1.54886922903247037	0.00000000000000000	24.19870239121519617	0.00000000000000000	8.10927996046460819
+ENSG00000006530	8.80454971255988106	7.99917864868142470	0.00000000000000000	35.22026291368730710	0.67030600538569196	6.79835983996391491
+ENSG00000006534	13.64300680125850818	52.69452996816630019	108.85257176882996077	10.20157822931527036	10.01435082710084323	7.72635647536003223
+ENSG00000006555	3.17436621697095589	0.36144877237674888	0.00000000000000000	15.93774269476436523	0.00000000000000000	9.36551371850770487
+ENSG00000006638	4.01501231019943461	0.00000000000000000	2.18803160659097928	8.20120180823671774	136.48074360709293273	0.97494198303188828
+ENSG00000007237	20.29072662299472896	178.94731433755015360	352.46268024482174042	91.44924285003025943	29.95440737213117188	12.97597764482702587
+ENSG00000007264	1.57300075159569630	2.55189070393459172	3.79657459634248395	82.89637896693513142	2.38484266548383861	9.35602144261074109
+ENSG00000007312	136.03892287557266627	6.16424688181871971	9.32103525800699728	10.91468689490298338	10.46102782063642422	9.09703644518021903
+ENSG00000007350	0.02318248904205821	2.09235429559181219	1.06853708390384616	23.65487527335021412	0.21552999840039752	3.31163095274843178
+ENSG00000007402	0.00000000000000000	1.54904680315698151	0.07991803974375573	10.76574637657670053	0.00000000000000000	0.00000000000000000
+ENSG00000007516	9.27107104214601740	0.00000000000000000	0.51486679742629571	1.11944593607123166	0.00000000000000000	0.00000000000000000
+ENSG00000008083	152.02630990460090743	396.96414061172765742	862.19957798724260556	111.12953793961219162	94.27047061444488918	59.49435154086530275
+ENSG00000008282	86.75488067854311680	22.84104586944576809	11.88921370381116382	11.94431954505548354	23.44252840162952722	28.33620780273383133
+ENSG00000008394	0.56580358886737070	42.38154579639463293	97.14933099044695552	4.03712454909152640	15.73877897903617473	1.19270749215812089
+ENSG00000008517	38.46668589665902971	61.62223627014646610	48.92895232963913799	800.80169256611281980	83.61846715190175416	684.57331795599247926
+ENSG00000010278	17.47268838881365483	4.72440528127569781	15.96729694423915369	7.20250477632845598	280.49309230665892301	7.59975108614372008
+ENSG00000010327	1.06599744387693818	14.61531792176235278	68.73546588949830038	3.35348164157993489	4.45589878048303145	0.00000000000000000
+ENSG00000010610	4.95647871502911830	106.66936626381776421	82.19987352751816445	0.26998684518291682	0.00000000000000000	60.62423466332666777
+ENSG00000010671	55.40565020873397373	36.27096833382704233	25.91439166338899369	3.90007837017270731	50.80765538017509186	2.12862626704779556
+ENSG00000011105	0.61755498372510820	0.00000000000000000	1.06820148096764567	6.05796902429013340	77.27801018450787751	0.00000000000000000
+ENSG00000011422	8.74127642887336265	522.77164113018920943	895.57341347544922883	22.96014477295076972	93.11486883740049336	31.57320781751694838
+ENSG00000011590	6.66835358216441065	0.00000000000000000	0.00000000000000000	0.00000000000000000	0.12943370610580737	0.80332251093859586
+ENSG00000011600	72.22327349238545935	1966.91863663913591154	3956.81925029393005389	2166.53062014245278988	412.24245587233099286	230.88911152906288748
+ENSG00000012124	123.06604570770221585	11.98377879244947941	25.50974256400644435	2.17956163307047257	12.49402749379097166	10.51009188331675226
+ENSG00000012779	11.41006757335437527	9.41886681129296832	13.95219615409234315	0.85175322672208598	1.57519059822404861	1.24695146688969771
+ENSG00000013016	2.82609703273277457	0.08857831434732462	9.43923346207442826	2.89050751397447980	180.59738578227316452	3.97568169934623050
+ENSG00000013619	0.00000000000000000	6.71726536322506451	11.15388654920358213	1.56835610466105213	0.00000000000000000	0.44293666933579517
+ENSG00000013725	11.07625812746364069	12.62741361510558136	5.59497154116954398	36.89811068766476154	16.00244367610647345	199.59823847880605285
+ENSG00000014257	1.66880171410063238	27.81315554684791636	31.61124089814737559	0.31504748248723918	1.22935749404262396	0.00000000000000000
+ENSG00000014914	0.74976216063238599	29.98078097462895641	37.07446547591617048	1.78013715213060730	0.00000000000000000	0.75501032523745537
+ENSG00000018280	25.87114681015200190	124.34829290740343311	915.55380545770196932	40.63428153434213641	53.67922025585442469	13.45047484371333368
+ENSG00000019102	0.03331128770187174	0.00000000000000000	0.00000000000000000	0.00000000000000000	8.65626379814893276	0.00000000000000000
+ENSG00000019144	4.18201418578113682	27.68555100875828145	65.23381386361631940	3.58397822778845132	14.34920005017628242	1.92623560239424330
+ENSG00000019169	0.24330207987453212	12.98262651775300647	62.06066051702065778	0.51404472636600496	4.61769239745642590	0.06665520377287298
+ENSG00000019582	8190.37569156544577709	9025.04478701344123692	2330.25104443895179429	696.30599905448241316	628.06065161228502802	591.54872885448605757
+ENSG00000019991	0.00000000000000000	0.90280666756996275	14.74229588913129696	0.00000000000000000	0.97877965810385759	1.46879833686812056
+ENSG00000020633	76.05003831565674943	60.36960695061877402	37.26609212021286766	668.17900573428937605	25.75317605703089896	123.42282929979403150
+ENSG00000021300	1.41217377538961131	0.57979682641388464	0.00000000000000000	0.86182637219798974	4.77607469927526829	25.65280002348655941
+ENSG00000021762	1.82030232323483609	8.44914820695101199	24.70683417025135142	89.47053816133690418	0.92548557533787579	12.95792877296642054
+ENSG00000022267	2.28778771869622100	5.45571333343107945	0.00000000000000000	6.74867158156156854	155.97238148307377514	7.16988172251325739
+ENSG00000022556	0.00000000000000000	1.43249754815945596	0.00000000000000000	15.21916574000652034	1.28797309535774107	1.29071846544294688
+ENSG00000023171	0.00000000000000000	74.24427759056548837	22.26622924248658819	14.26333404862452348	4.32805003847765679	8.96432301364788309
+ENSG00000023445	259.34145445848463396	30.67167178636223923	42.05460092910466585	17.95506683756224930	21.99598605827526754	102.21640069628745096
+ENSG00000025156	2.69602641673015153	0.03110224306765355	1.87000065617794542	12.39382632330279854	0.00000000000000000	17.61569411477425717
+ENSG00000025708	86.83818875316866581	595.44288719170185686	1221.34029138778669221	97.91369325764507892	188.65563080706991173	88.87236841098155082
+ENSG00000026559	43.44975264297153217	2.14116337993250694	4.58136364911217697	1.35479880347831960	8.99188702445565546	0.76565127161070134
+ENSG00000026751	11.96219930733954762	58.76917237484627066	26.76045634045497579	149.98614748842035738	0.00000000000000000	23.06248199847220803
+ENSG00000027075	7.91829056899195205	22.35866378789061670	35.79175138172125514	270.75616958657712985	28.16534274917944103	137.66632409354761535
+ENSG00000027869	0.99779363443649516	6.68640316698895720	6.03866475411209436	164.15888998380995645	13.83985749378403263	35.07739184763021711
+ENSG00000028277	318.46894529516822558	159.58505822001544061	419.88692491545452867	37.44107481252356706	10.83869452339154726	24.99864964666364031
+ENSG00000029534	14.55009628620009110	3.61835243461229084	1.75284179188419964	9.73832461570739660	173.54928669507896188	3.25769936396075988
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diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot1/out_hires/fractions_results.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot1/out_hires/fractions_results.txt
new file mode 100644
index 0000000000000000000000000000000000000000..152653a85ba3a881a28c00bb23203f16ed3b0447
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot1/out_hires/fractions_results.txt
@@ -0,0 +1,27 @@
+Mixture	B cell	DC	Monocyte	NK cell	Other	T cell
+N064_TOL	0.0784339153343856	0.0585819604710846	0.238996950965814	0.1462806988208451	0.0217096719754586	0.4559968024324117
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+N038_BC	0.1000971981286595	0.0346298596930059	0.1996320934189143	0.162768574329296	0.2038362684795058	0.2990360059506183
+N038_AC	0.1074977917762033	0.0044330090625351	0.2408040765794871	0.1832529104387506	0.2503018499148859	0.2137103622281376
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+N138_TOL	0.1260810632067879	0.0	0.2910937911884805	0.0717664204001708	0.4810019743319916	0.0300567508725691
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+N022_TOL	0.0980947622840859	0.0	0.2976196861788387	0.1948877458754833	0.1976851629859831	0.2117126426756087
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