diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv3/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv3/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e52e2032a16c79ccce64c632dfc133eccc9fefc3
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv3/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
@@ -0,0 +1,6 @@
+B cell	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+DC	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+Monocyte	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+NK cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2
+Other	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2
+T cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv3/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv3/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt
new file mode 100644
index 0000000000000000000000000000000000000000..45cdd0fd227214a86be4a25b191ca7bdd5b3da9a
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv3/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt
@@ -0,0 +1,2336 @@
+GeneSymbol	B cell	DC	Monocyte	NK cell	Other	T cell
+ENSG00000001561	13.96947295561152558	15.78031986154729438	0.00000000000000000	61.66609592016860830	3.17992510284163377	21.24557473233615212
+ENSG00000002587	18.79628702290264641	7.82900544998649561	1.74586045981928173	0.00000000000000000	0.03579419542615001	0.52235862174032699
+ENSG00000002745	4.59437019618894738	0.00000000000000000	0.70129536757786959	0.00000000000000000	0.00000000000000000	0.00000000000000000
+ENSG00000002933	3.23137067332317951	35.85192559244291743	323.50425224764194354	22.35711000298548967	7.33576692351785020	5.06321649740391067
+ENSG00000003249	20.89336411483981237	2.82966561223060609	0.00000000000000000	0.00000000000000000	0.61546112664967922	3.47320260991772578
+ENSG00000003436	1.89740353849054166	0.05467433418526908	2.56966641760780323	3.85959359923504630	41.16467159567319101	0.00000000000000000
+ENSG00000004399	13.11087989985855806	59.71185704149950624	233.13930402765799954	65.01009301922296402	0.00000000000000000	23.35641088171734125
+ENSG00000004799	4.41078213391156293	29.16756223851909269	147.41797407325256586	0.00000000000000000	21.00782264041504277	5.54211852827684659
+ENSG00000004838	0.75696605756418622	1.92741893944752718	1.16180170083185219	8.24175268212250778	0.00000000000000000	0.55408077353048690
+ENSG00000004939	0.00000000000000000	0.00000000000000000	0.00000000000000000	0.00000000000000000	99.22413518709360858	1.16312256354311638
+ENSG00000005102	0.00000000000000000	0.76962818685339318	1.19304245896822780	0.11269583147252439	0.00000000000000000	3.16892920452349314
+ENSG00000005243	1.05786337685078347	2.04265405075542583	0.67985665516425409	11.83745746204382066	2.36932840452666538	1.62625269606864298
+ENSG00000005249	16.54586605674958832	66.45426518965903995	26.89313092595196153	15.07650640829294453	1130.21112986706157244	15.20762434062492474
+ENSG00000005379	9.40901313712245724	26.26537657331123299	19.18291019101455674	156.37805038663310597	38.15170629629428589	21.23685464750741403
+ENSG00000005381	0.79130367512738176	1.82827652312149613	29.95283485802393031	0.05365092083005323	2.23032714435320312	1.62955683219676839
+ENSG00000005469	7.18618667140528267	9.07011229395223850	0.00000000000000000	24.07754634543856653	4.84796231777399900	6.87499067355085636
+ENSG00000005471	27.36165858082162927	0.00000000000000000	0.00000000000000000	1.02835138864010300	0.00000000000000000	1.10017754256432121
+ENSG00000005961	22.11402791135533974	83.42406959265110800	12.54870003937393186	2.39014010609996141	1318.44906457509364373	7.47925797905934520
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+ENSG00000006534	0.00000000000000000	82.78511670525860211	122.53451833104041668	2.51035484534903297	22.20751804480416425	3.95939800808528419
+ENSG00000006555	3.27458439911176891	3.84076204376840913	0.00000000000000000	27.74574927010287340	12.91322499401620938	16.82299582107731339
+ENSG00000006607	37.21807253304054797	19.41759652451405671	12.21656991050638652	8.91249514349451744	3.40272314055672043	7.10358049001572578
+ENSG00000006638	6.79030206816161197	0.00000000000000000	0.00000000000000000	7.63585128035422311	59.17949326828089340	2.53264290786808433
+ENSG00000006756	13.07587800181499027	36.68639558497901021	55.36606422357372992	16.82500871566626444	2.75366576793595286	3.30273189362009623
+ENSG00000007237	20.49502061408072962	113.24367915321820988	396.51781984585824148	103.38346568687042293	18.20258353623157532	12.76610216072512749
+ENSG00000007264	6.68943854686454387	19.20345919862005957	2.77417340682244085	288.87654077520693363	18.32846743419441538	78.41956999481105584
+ENSG00000007312	255.17630603366725950	13.90351320823181069	15.56194704090349035	15.25755051742977031	15.62962269406487259	13.14757319237553190
+ENSG00000007350	0.36281907616348097	0.00000000000000000	0.00000000000000000	43.40207961331849873	2.40503178270846751	3.95024129895509901
+ENSG00000007402	1.41971791989819507	0.00000000000000000	2.12359461735231481	35.85248283670005520	1.28003492538450470	6.42852610791628010
+ENSG00000007516	19.11653222985956191	2.26314907455744541	4.23835257431749568	0.00000000000000000	7.50619951758631210	3.85252480343702075
+ENSG00000007968	10.48603670411738342	11.10156437765000348	83.74446555109616952	0.00000000000000000	19.62909115336814736	4.01771244637754954
+ENSG00000008282	116.69135517854465434	32.42399150729077917	31.74771492745270862	39.20438032827752295	23.21681362892935141	45.59162021715278001
+ENSG00000008394	2.30718738719841410	78.11325282318088625	124.21690209832573260	0.00000000000000000	20.21954070997335506	1.73567607147079794
+ENSG00000008405	18.32285505123072866	0.24423826564321255	11.53245446820089271	65.27706863762951173	2.88130753797429628	31.12671827140512448
+ENSG00000008516	5.20557143700157265	0.00000000000000000	194.97826550008269919	0.00000000000000000	21.61006025065913150	4.98774030651583100
+ENSG00000008517	61.73728051041572229	58.23997213018559194	52.31924904360916173	792.03234807418311902	161.31589210479066310	987.53262186180324989
+ENSG00000009694	0.48749872808427086	2.65553728311708026	1.08166130082670531	20.69370738876743232	0.22713387170249399	9.92020525406244857
+ENSG00000010278	25.99221578729312654	7.45115634266016258	14.40400977011193184	5.24690091816203719	214.16805367279033590	4.07086819100379937
+ENSG00000010327	25.23531862617301869	188.38027743954364723	1068.25011250793045292	32.32812487624947551	152.38020023093375244	27.28966831307953811
+ENSG00000010610	5.82719163565206877	317.74487268609249213	209.46273540176039774	8.32594162260800630	87.07135242648546125	116.19166436691364197
+ENSG00000010671	160.27619759789916998	103.04817400453762843	112.16422325223351208	26.93656614025068308	81.90945788619856671	3.78705760373377975
+ENSG00000011028	2.37020141871001178	1.31308505493307748	0.00000000000000000	0.00000000000000000	10.06580127501253763	1.67226229464538489
+ENSG00000011105	0.00000000000000000	0.27607770155800909	0.00000000000000000	9.66308135754539954	68.86246382304985048	0.87427251672636097
+ENSG00000011422	1.49634382631257612	195.77783522930093341	325.80776444900533306	0.00000000000000000	44.67684399031989528	6.94128751027928992
+ENSG00000011590	19.50101771587045008	4.67361253282402611	0.00000000000000000	0.00000000000000000	1.16901568799162159	0.35122835695672217
+ENSG00000011600	31.38055564984249202	1025.60829995168774076	2028.83499826231059160	1027.27792802957606000	202.24314231307951673	86.02469372698116956
+ENSG00000012124	290.04498923061328242	8.12984283510409078	19.28433562866077366	11.11324375408339549	15.42220813475374896	8.91098006355185746
+ENSG00000012779	287.38626425726067737	183.52285430985156722	374.13851100719585929	26.42064234340483608	80.59568108311430024	11.49261334049624850
+ENSG00000013016	22.80509662565310336	1.96633228842337759	11.35403779243828204	0.00000000000000000	168.06492858601856710	6.41586452466462109
+ENSG00000013306	79.84632976920558178	48.69432699150287647	38.75413239209598260	49.46647589084719954	566.31372728094243030	72.78959309676285727
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+ENSG00000013619	1.77067973542430024	0.98473965997710777	0.00000000000000000	0.16329233368396068	1.58948786723903734	0.70372797977465029
+ENSG00000013725	20.05753780858179880	1.56014338704720013	16.70704910956284905	86.67431085582892081	111.09667276371281730	329.63835688695667159
+ENSG00000014257	2.32170140400537983	20.51997779929808630	44.08261339920321120	0.99071117428308020	8.76382737279539192	1.03093517185588923
+ENSG00000014914	1.34575152818504584	56.41944061386003995	107.85731844110823374	9.87699566012163643	6.14184588129023457	6.24074983194185151
+ENSG00000015413	4.66444995585934219	0.00000000000000000	0.00000000000000000	0.00000000000000000	0.00000000000000000	0.00000000000000000
+ENSG00000017427	5.73880761953914131	0.30714309137411611	0.00000000000000000	0.00000000000000000	0.00000000000000000	0.00000000000000000
+ENSG00000017483	41.06910355134746737	5.06279002533339106	0.00000000000000000	20.92979889503246937	23.08536513054199091	9.77815615676044558
+ENSG00000018280	56.14618911634907761	137.41250942980630612	1686.41969824854663784	43.73686935411313215	164.47996356634905624	17.84864231691947722
+ENSG00000019102	0.08348777657043575	0.00000000000000000	0.00000000000000000	0.16269109916586588	6.11750539646490488	0.00000000000000000
+ENSG00000019169	0.55852593981518039	28.14509277361739237	193.10689544861133982	2.62268324263782526	0.00000000000000000	5.82694907219355063
+ENSG00000019582	10762.04629703355203674	11360.07083024177518382	2795.94428505379210037	1779.17814233939179758	1071.36121107698636479	735.83602647027362309
+ENSG00000020577	6.21244593741213080	7.22272675668773267	33.35737943711426112	2.26687043860191118	14.16355834660603463	0.99325359194169272
+ENSG00000020633	112.59064903511215050	68.73030859551792560	53.29546988603460278	741.09029436811010783	56.21652452981312820	269.83029886279257425
+ENSG00000021300	6.38529371037119997	4.42118576922146644	0.29008581337073386	5.65755549038313266	4.49615289831863851	44.30386998256052067
+ENSG00000021762	6.92345697051319764	19.53738378597428849	39.57973648867755401	170.77136103751178098	6.11593517377284446	15.82187875191991644
+ENSG00000022267	10.59400500477508089	8.40029842920367642	9.53631653588872652	10.64563714025751651	127.33695872943444272	5.27758838750985326
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+ENSG00000023445	355.97139983821801934	39.93900192094691448	38.10942130701140229	14.70777675126354467	22.43465284642217838	117.51571811049247174
+ENSG00000024422	0.00000000000000000	1.45441059227336922	0.00000000000000000	0.00000000000000000	11.71390497662219765	0.00000000000000000
+ENSG00000025156	15.12315709864404489	3.15464963985614677	5.29755082777667319	16.32894142357741529	3.72241508124573839	28.78993989862530611
+ENSG00000025708	136.91809688564458725	601.96816903151648148	1434.61245368341315043	169.48024074283063101	146.35451990159495494	65.05576555149804108
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+ENSG00000031081	8.80922747498975411	92.99648307376187972	29.31251278661290982	13.32753897999588233	4.55018102944235459	13.62602849862408050
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+ENSG00000035115	34.11084451489325886	15.66505083822433875	5.27316948598089041	17.96762017714871362	15.32037306852094183	71.60752589236659560
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diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv3/out_hires/fractions_results.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv3/out_hires/fractions_results.txt
new file mode 100644
index 0000000000000000000000000000000000000000..795cecb555eb6738dcb962810431778dd3f85af5
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv3/out_hires/fractions_results.txt
@@ -0,0 +1,17 @@
+Mixture	B cell	DC	Monocyte	NK cell	Other	T cell
+Abd-S102	0.0840823369617394	0.1804138528647679	0.3713247147441404	0.0144838980116785	0.1506831829108749	0.1990120145067985
+Abd-S103	0.0801863820621448	0.0265343762320146	0.1019732378758726	0.0174009132806746	0.3315793072663634	0.4423257832829299
+Abd-S51	0.246108216861802	0.3427299279845272	0.1465969283169742	0.0594426012417638	0.0261827536151218	0.1789395719798107
+Abd-S83	0.0	0.1761567375629553	0.3753234311411478	0.0413306510068374	0.4071891802890593	0.0
+HC12	0.0624134075726895	0.1844204571191996	0.0392741884170563	0.2826619311528065	0.0	0.4312300157382478
+IC22	0.0	0.324761189685743	0.3244254017768116	0.0605525654635168	0.0339116486837851	0.256349194390143
+PIC01	0.096986617635745	0.0770497577502664	0.0255640017056154	0.010232892536783	0.0167539488268373	0.7734127815447526
+Res-PS02	0.1858718376805395	0.0	0.0945883695697274	0.0	0.1298757165376337	0.5896640762120993
+Res-PS16	0.2643544548634335	0.0	0.0045037824966101	0.0	0.0781363246005785	0.6530054380393778
+Res-PS21	0.1502789887194938	0.1179057966399573	0.1789697682121973	0.1571733230175722	0.0737532006201292	0.32191892279065
+Res-S125	0.2234623819642022	0.0	0.1628458027330053	0.1608595728525653	0.0146133048734611	0.4382189375767658
+Res-S136	0.0	0.3200749952350627	0.321316593960233	0.0	0.0	0.3586084108047042
+Res-S149	0.0152062409132419	0.3246692081987127	0.3014838831596639	0.1023571717235041	0.0094974317792219	0.2467860642256553
+Skin-S38	0.1233856939138593	0.0225557650044916	0.0947596130390175	0.0198390077416952	0.0043919402805072	0.735067980020429
+Uri-S134	0.0	0.3583887461205977	0.2236158922334151	0.0547132652082065	0.0010920733948557	0.3621900230429248
+Uri-S20	0.05611495280739	0.0851355067245436	0.2318786685008466	0.0049205631281044	0.1467839414725995	0.4751663673665156
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv4/out_fractions/CIBERSORTx_Adjusted.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv4/out_fractions/CIBERSORTx_Adjusted.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3079bf4e5232815e7ed317984ad7dd80271ab69d
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv4/out_fractions/CIBERSORTx_Adjusted.txt
@@ -0,0 +1,17 @@
+Mixture	B cell	DC	Monocyte	NK cell	Other	T cell	P-value	Correlation	RMSE
+Abd-PS20	0.60008493366122428	0.00000000000000000	0.00107774291708828	0.00000000000000000	0.00000000000000000	0.39883732342168748	9999.00000000000000000	0.89495567353058736	0.66400462883189681
+Abd-PS27	0.01635307031914649	0.08314368495334547	0.06400510210455714	0.00000000000000000	0.07663311632178842	0.75986502630116248	9999.00000000000000000	0.45321130705974999	0.90558779316172988
+Abd-S42	0.00393437499944752	0.18324437886688544	0.14083339140183354	0.17741177636342206	0.04839124667879958	0.44618483168961193	9999.00000000000000000	0.83283571782877508	0.66132933484858059
+Abd-S54	0.10039425861002527	0.16097838360904632	0.14439261807754639	0.32688205127085451	0.05907087204912038	0.20828181638340723	9999.00000000000000000	0.91375418931684460	0.57924843639122681
+Abd-S98	0.00254273743119654	0.19988947019112868	0.38700470224498690	0.15828058414014479	0.09919378430950912	0.15308872168303397	9999.00000000000000000	0.81610947383496024	0.58832866627771996
+HC16	0.00000000000000000	0.17820804590228292	0.00000000000000000	0.47072641190651898	0.00013693157606866	0.35092861061512937	9999.00000000000000000	0.85191174209908227	0.74178271291307540
+IC15	0.01135892833142802	0.28598775918025149	0.05287683410228545	0.13226391544630517	0.00000000000000000	0.51751256293972980	9999.00000000000000000	0.83742893069670354	0.70514703352116859
+PHC02	0.27705080770003293	0.15678867844455530	0.00969476677924225	0.02654426552149924	0.01197409489917475	0.51794738665549567	9999.00000000000000000	0.83631661909250476	0.73378091944776480
+PIC02	0.39503576451076461	0.12131575674742819	0.00173286902797966	0.01868146738380598	0.01419685381906265	0.44903728851095892	9999.00000000000000000	0.89941977568791032	0.68309062804726806
+Res-PS03	0.25034954563631240	0.29395374773342026	0.20217334667158446	0.00000000000000000	0.02757024479239885	0.22595311516628422	9999.00000000000000000	0.81293729936007164	0.59658613143171613
+Res-S127	0.00000000000000000	0.39578618517563985	0.25497638338157141	0.04172128447255212	0.04426725504492505	0.26324889192531142	9999.00000000000000000	0.87043589944065436	0.50094175706098709
+Res-S164	0.09851282962818843	0.19880247323480493	0.01383318723547849	0.10753879276496164	0.01263512419074927	0.56867759294581721	9999.00000000000000000	0.87842713324194055	0.73670006662802068
+Res-S166	0.19203743698592210	0.04872196428680566	0.33901146723068371	0.03858612771665659	0.01976220795079437	0.36188079582913757	9999.00000000000000000	0.80267709281316635	0.59762310452605605
+Res-S87	0.00000000000000000	0.35351146342158940	0.18462974471204352	0.14511581133336399	0.11698516122977516	0.19975781930322803	9999.00000000000000000	0.84909351069783012	0.56328425399846704
+Skin-S43	0.00000000000000000	0.11808574793196493	0.07940815879247747	0.01045607160513795	0.23894634100571385	0.55310368066470594	9999.00000000000000000	0.52493818068902209	0.86076654069506853
+Uri-S93	0.12639223136895417	0.15113457941622524	0.11335304400883596	0.00823072381342750	0.41370361105904080	0.18718581033351636	9999.00000000000000000	0.84190422581646041	0.60074031317816290