diff --git a/paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_fewshot_d0first.txt b/paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_fewshot_d0first.txt new file mode 100644 index 0000000000000000000000000000000000000000..de24986a6a31471d53c9d699fec026ff887d1435 --- /dev/null +++ b/paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_fewshot_d0first.txt @@ -0,0 +1,20 @@ +# server_1, draw 0 of every dataset first (one full comparison soonest), then draws 1-4; Giroux last (12-14 large representatives, pretraining-heavy) +fewshot|ji2025_chili|0|clean_sample_sc +fewshot|ye2026_sepsis|0|clean_sample_sc +fewshot|immicro|0|clean_sample_sc +fewshot|giroux2022|0|clean_sample_sc +fewshot|ji2025_chili|0|clean_sample_sc +fewshot|ji2025_chili|1|clean_sample_sc +fewshot|ye2026_sepsis|1|clean_sample_sc +fewshot|immicro|1|clean_sample_sc +fewshot|giroux2022|1|clean_sample_sc +fewshot|ji2025_chili|2|clean_sample_sc +fewshot|ye2026_sepsis|2|clean_sample_sc +fewshot|giroux2022|2|clean_sample_sc +fewshot|ji2025_chili|3|clean_sample_sc +fewshot|ye2026_sepsis|3|clean_sample_sc +fewshot|giroux2022|3|clean_sample_sc +fewshot|giroux2022|4|clean_sample_sc +fewshot|ji2025_chili|4|clean_sample_sc +fewshot|immicro|4|clean_sample_sc +fewshot|ye2026_sepsis|4|clean_sample_sc diff --git a/paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/queues/server2_extra2_20260929.txt b/paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/queues/server2_extra2_20260929.txt new file mode 100644 index 0000000000000000000000000000000000000000..e996ade4eb4d81870b8db3307285b87ae399a907 --- /dev/null +++ b/paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/queues/server2_extra2_20260929.txt @@ -0,0 +1,3 @@ +# server_2, 2026-09-29 21:50: sepsis draw 4 and Ji draw 4 moved from server_1 (prepared there, copied with checksum verification); runs after scsemi-queue-s2b ends +fewshot|ye2026_sepsis|4|clean_sample_sc +fewshot|ji2025_chili|4|clean_sample_sc diff --git a/paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/metadata/inference_locations.json 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Deck, PDF, frozen 12:00 draft, builder, figure scripts, figures and every plotted/quoted number table. CPU only; no new checkpoint or inference. || Within-dataset paired fine-tuning benchmark of the final 6k 1x E16 model (plans/paired_finetune_intradataset_20260927): LoRA (recommended protocol), full and condition-encoder fine-tuning, sc-only control, LoRA learning curve, K-augmentation null, 5-pair deployment scenario, on ImMicro, Ye 2026 sepsis, Imperial ESKD COVID, Giroux 2022 and Ji 2025 (whole-blood bulk); scores (scANVI composition, precision/coverage, contrast logFC r, top-50 DEG), figures, paired-data manifests, conditions, run receipts and the recommended-protocol LoRA checkpoints. The scSemiProfiler 5-pair baseline: every finished draw is included as score tables and a completed location; draws not yet finished at request time (none on 2026-09-30: 25/25 done) are planned locations. Not uploaded: per-cell count arrays and non-recommended fine-tuned checkpoints (sha256 recorded in BUILD/MANIFEST and RUN.json). Server_2 Imperial LoRA checkpoints already archived by 20260928T225702Z-paired-ft-scsemi-delta (now archive symlinks) are not re-sent." +}