diff --git a/paper-releases/pbisc-diffusion/updates/20261008T125804Z-deck-fig2-3-healthy-fig5-rare/diffusion/dataset/server_1/model8/plans/rare_states_paired_20261008/work/ye2026_sepsis/fivefold/zs__raw.npz b/paper-releases/pbisc-diffusion/updates/20261008T125804Z-deck-fig2-3-healthy-fig5-rare/diffusion/dataset/server_1/model8/plans/rare_states_paired_20261008/work/ye2026_sepsis/fivefold/zs__raw.npz new file mode 100644 index 0000000000000000000000000000000000000000..b668e3f84bff7233bde6930807c2c4d46fe2ccb6 --- /dev/null +++ b/paper-releases/pbisc-diffusion/updates/20261008T125804Z-deck-fig2-3-healthy-fig5-rare/diffusion/dataset/server_1/model8/plans/rare_states_paired_20261008/work/ye2026_sepsis/fivefold/zs__raw.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:51d78fbc256abefebb4f779671ef3a7d5eea30429d590d4d29a872142fe4d7fc +size 2183011 diff --git a/paper-releases/pbisc-diffusion/updates/20261008T125804Z-deck-fig2-3-healthy-fig5-rare/diffusion/metadata/NOTE.md b/paper-releases/pbisc-diffusion/updates/20261008T125804Z-deck-fig2-3-healthy-fig5-rare/diffusion/metadata/NOTE.md new file mode 100644 index 0000000000000000000000000000000000000000..bc811d712a2f1fbe8f1a0067e02464ed4fb3dc0f --- /dev/null +++ b/paper-releases/pbisc-diffusion/updates/20261008T125804Z-deck-fig2-3-healthy-fig5-rare/diffusion/metadata/NOTE.md @@ -0,0 +1,5 @@ +# PBISC-diffusion update 20261008T125804Z-deck-fig2-3-healthy-fig5-rare + +Paper summary deck 2026-09-30 (presentations/2026-09-30--paper-summary--r00): English slides over the ten paper sections plus Supplementary and Appendix blocks (slide list in README.md). Deck, PDF, frozen 12:00 draft, builder, figure scripts, figures and every plotted/quoted number table. CPU only; no new checkpoint or inference. || 2026-10-08 Fig. 5 rare cells: plans/rare_states_paired_20261008 (4 paired disease cohorts, 5-donor draws and 5-fold; zero-shot, calibration, scSemiProfiler, LoRA; NPZs sha-checked, the benchmark's Poisson read-out and labels reproduced cell by cell; 15 literature marker states). Deck: healthy-only Figs 2-3 (tools/fig23_healthy.py), Fig. 5 (tools/fig5_rare_states.py), no broadcast anywhere; 76 slides. + +Payload states are recorded as supplied. Inference locations are pointers, not archived generated outputs. diff --git a/paper-releases/pbisc-diffusion/updates/20261008T125804Z-deck-fig2-3-healthy-fig5-rare/diffusion/metadata/inference_locations.json b/paper-releases/pbisc-diffusion/updates/20261008T125804Z-deck-fig2-3-healthy-fig5-rare/diffusion/metadata/inference_locations.json new file mode 100644 index 0000000000000000000000000000000000000000..3ca83ac2b80cf6d0293c5af313c9ed025487510a --- /dev/null +++ b/paper-releases/pbisc-diffusion/updates/20261008T125804Z-deck-fig2-3-healthy-fig5-rare/diffusion/metadata/inference_locations.json @@ -0,0 +1,5 @@ +{ + "locations": [], + "project_id": "pbisc-diffusion", + "update_id": "20261008T125804Z-deck-fig2-3-healthy-fig5-rare" +} diff --git a/paper-releases/pbisc-diffusion/updates/20261008T125804Z-deck-fig2-3-healthy-fig5-rare/diffusion/metadata/request.json b/paper-releases/pbisc-diffusion/updates/20261008T125804Z-deck-fig2-3-healthy-fig5-rare/diffusion/metadata/request.json new file 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Deck, PDF, frozen 12:00 draft, builder, figure scripts, figures and every plotted/quoted number table. CPU only; no new checkpoint or inference. || 2026-10-08 Fig. 5 rare cells: plans/rare_states_paired_20261008 (4 paired disease cohorts, 5-donor draws and 5-fold; zero-shot, calibration, scSemiProfiler, LoRA; NPZs sha-checked, the benchmark's Poisson read-out and labels reproduced cell by cell; 15 literature marker states). Deck: healthy-only Figs 2-3 (tools/fig23_healthy.py), Fig. 5 (tools/fig5_rare_states.py), no broadcast anywhere; 76 slides." +}