diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv3/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv3/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a028df9da3966d60282283d156359fa2d42d1862
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv3/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
@@ -0,0 +1,2354 @@
+NAME	B cell	DC	Monocyte	NK cell	Other	T cell
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+ENSG00000273749	2.43154063446175872	49.07800255542039025	41.03817478347864522	7.77349520163136187	25.09520736017342557	7.66272394141455226
+ENSG00000273802	4.68459837877672314	1.00000000000000000	1.00000000000000000	1.00000000000000000	53.08490867552608705	1.00000000000000000
+ENSG00000274641	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	164.96590549938073877	3.38095238095237782
+ENSG00000275302	11.93307078529891818	5.22086438217894777	18.91763765342943060	732.24275233336913971	5.52170952538010518	193.29377420196200887
+ENSG00000275713	7.75446509230067260	3.65490256797842106	2.99760287654814661	6.68243680610590296	257.31657187528549002	5.06651109375989783
+ENSG00000276070	1.00000000000000000	4.09338823620929215	2.99760287654814084	75.53810403913809068	1.00000000000000000	15.14979921818611075
+ENSG00000276600	1.00000000000000000	7.20867853942602554	3.15331610680447483	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000276644	1.00000000000000000	10.51317878837133080	2.93423597678916659	1.00000000000000000	6.28163841709262716	1.00000000000000000
+ENSG00000277075	4.90226635066165350	6.66629267340643317	1.92235488870104199	16.14586695265904481	123.88173217476868615	15.92425413534097345
+ENSG00000277443	142.54818459294713762	91.57060812296660401	354.77933728684348580	8.07827759345537189	9.88448478006846010	7.34628851540617056
+ENSG00000277481	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	23.92089233161805950	1.00000000000000000
+ENSG00000277586	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	7.05559776258328331	7.93726173396871726
+ENSG00000277632	4.10559006211181643	14.60638309348978936	40.84454152479380440	177.70685174601331369	4.82796461042135583	15.19566805179644042
+ENSG00000277972	29.91653742938029481	46.94691701390821237	63.42387129664655987	174.33321557105693955	18.00377754277850784	86.31192780110374940
+ENSG00000278129	6.71053030746392842	3.95631148588640214	1.82781456953642207	17.76480353645193944	4.54351130754221533	5.45235975066787493
+ENSG00000278588	1.20966997945234311	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	5.33066328858690053
+ENSG00000278828	8.49502890172766634	17.02145421235643852	21.00577976519772250	21.32519071592645687	1380.83453623775130836	9.23384836527685415
+ENSG00000283632	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	20.74621419614601336	1.00000000000000000
+ENSG00000283782	38.46157898274660170	15.93798427559593200	25.07032087301419665	119.34189271897538731	14.95929732782391142	43.84087048830641464
+ENSG00000284691	32.30987818326916994	5.13318656280519736	1.89847259658580536	13.38236221307484364	6.18443517315408364	32.60479796228884197
+ENSG00000284770	1.47732696897374671	2.85185185185184453	1.00000000000000000	6.18134715025908932	2.50060024009604343	1.00000000000000000
+ENSG00000284862	2.28435653737478184	1.92644061515656273	1.00000000000000000	5.48861559181292158	1.00000000000000000	1.00000000000000000
+ENSG00000284976	1.11366477983132195	3.42795805980081969	6.25370328271472431	6.92710166807289607	57.18033193452592400	9.66157292719260852
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv3/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv3/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e52e2032a16c79ccce64c632dfc133eccc9fefc3
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv3/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
@@ -0,0 +1,6 @@
+B cell	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+DC	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+Monocyte	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+NK cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2
+Other	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2
+T cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv3/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv3/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3092188d6cc3b280d0fbd6474b75a559f7da8c09
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv3/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt
@@ -0,0 +1,2354 @@
+GeneSymbol	B cell	DC	Monocyte	NK cell	Other	T cell
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+ENSG00000000971	1.98136868156821810	0.00000000000000000	1.01740230075827087	5.59953207789869634	9.38212468179394143	27.81766750541923727
+ENSG00000002587	7.73085686241773828	3.07104487061042697	0.85324174534404407	0.04433972837178469	0.00000000000000000	0.00000000000000000
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+ENSG00000003249	7.03779778078495521	0.36467444078810435	1.23313482974112576	0.00000000000000000	0.00000000000000000	1.04527547492321515
+ENSG00000003436	0.00000000000000000	1.59032562421596291	0.00000000000000000	0.00000000000000000	28.36857483944031344	0.00000000000000000
+ENSG00000004468	113.25944180769587888	23.76513070952866613	6.52841533327233758	205.76439403476433654	14.83247115731815313	10.67240947081218572
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+ENSG00000005187	15.16620059537327059	1.10868429968372650	0.00000000000000000	2.54539045293337018	28.11238885546702804	3.03471284822625487
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+ENSG00000006638	3.01526219782023297	2.14983234866061945	0.00000000000000000	0.00000000000000000	46.59122778567503076	0.00000000000000000
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+ENSG00000013016	12.49428655919648179	4.31908201559237703	0.05214578711551397	4.57386952338202768	111.40361580597883062	4.88665072297447800
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+ENSG00000019582	12413.15775996599040809	13286.06091134484449867	4813.33632200108422694	1772.52422425656777705	1312.26153530410647363	1122.35228424319302576
+ENSG00000019991	3.78680577019841724	1.83195100250860765	27.22415735117320068	3.39418598605965105	5.49028130956723093	1.17780527505461374
+ENSG00000020577	13.13118892609312738	15.56299091158708592	56.53455089310474335	8.44028300289438072	9.12191968004711562	1.49432909646563505
+ENSG00000020633	82.24461394999757147	163.87087090912061171	153.18649966650286842	790.31518251076124670	64.72959566796977526	265.69975678277501174
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+ENSG00000021762	17.02882319372405462	46.63393272917659971	61.55188157900312262	266.10811962313488266	12.14249361267731508	63.42742709034771309
+ENSG00000022267	2.81905280014841608	7.24053765527219628	0.08040746853515213	8.71776435051310727	124.17711054618906985	10.70024013322865208
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+ENSG00000023171	8.82738280452198154	46.24222665802747656	35.73282643850718188	20.00273692174771867	2.07126688861813246	29.93096555878018705
+ENSG00000023445	296.29089603708632694	46.29619828882673715	55.21323536032732449	30.09825842834719012	47.10491074358446184	79.82431254773406692
+ENSG00000024422	0.00000000000000000	0.00000000000000000	0.00000000000000000	0.00000000000000000	5.86138740572818673	0.00000000000000000
+ENSG00000025708	172.04326145633939404	773.35365031374442424	1692.24505070516715932	177.13523988063073489	162.34994500552983254	103.14154359657412385
+ENSG00000026559	8.85320839592135300	0.24845935036696759	0.00000000000000000	0.00000000000000000	0.00000000000000000	0.27829721305824107
+ENSG00000026751	50.29998704727719883	74.82333924303371475	58.38338999527216089	218.03625508464372729	0.00000000000000000	67.84499442839096162
+ENSG00000027075	29.89791323216591934	19.06173819794661028	20.40683640039523183	432.44868175699690482	80.31043038934193135	254.17698963719485050
+ENSG00000027869	17.13331041943753519	2.91438417823385132	10.39170322940085001	271.09230702430465954	17.02984554359009906	126.74023841915777666
+ENSG00000028137	145.20670464448733128	333.80005219879387823	1118.28314468833491446	411.82741971033561867	111.01681608182212813	244.20165397231281190
+ENSG00000028277	349.96815781392569988	206.69734671243855928	441.24062547908511078	59.87012269485029492	52.72764935035326772	54.59937979564060839
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+ENSG00000030419	11.88301349764523707	2.91816647768042481	0.00000000000000000	38.05301443801972283	6.39158017660364752	14.67809549832681881
+ENSG00000030582	231.10343112526581422	1153.29214895387872275	1047.82769311626884701	148.09654626526173615	130.81639403367088903	58.31131654541469089
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+ENSG00000033327	28.87537792282170557	101.92555555398294587	150.30402287590058563	21.35359955449223435	89.24344228222820163	13.03035751873206394
+ENSG00000034053	8.70427241473197633	0.00000000000000000	7.72573238933216455	125.17642362274725087	32.06845534793737329	59.05130368903865445
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diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv3/out_hires/fractions_results.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv3/out_hires/fractions_results.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8c0ce351445cda4f8a17ea696512346e9ac1f957
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv3/out_hires/fractions_results.txt
@@ -0,0 +1,25 @@
+Mixture	B cell	DC	Monocyte	NK cell	Other	T cell
+C60_2504	0.0596931026552672	0.0	0.2871391141971881	0.0269527133547189	0.0403759726019382	0.5858390971908872
+C69_1804	0.0029132714361838	0.0641648559156364	0.4523688274425535	0.0284206097727953	0.050017698114045	0.4021147373187858
+C85_2004	0.0	0.0594086285256419	0.489078178667869	0.024764435114618	0.0909553782377972	0.3357933794540738
+C113_0605	0.1092706806229711	0.0	0.6467898806548156	0.0	0.0634496687835789	0.1804897699386343
+C126_2504	0.1233643070998776	0.0718531399722455	0.2962205233097281	0.0185938462472243	0.0688581113845482	0.421110071986376
+C126_3004	0.1138240511947721	0.046467440037355	0.2567854817984781	0.0	0.070851995213745	0.5120710317556496
+C126_0605	0.1002300727900877	0.169655110151718	0.2069816311994468	0.0751057760230322	0.0650586378662727	0.3829687719694423
+C132_2804	0.1656931715128811	0.0184752299839459	0.176891039587515	0.0689377451272918	0.0072939070146257	0.5627089067737403
+C132_0205	0.1133710718011489	0.074529712256778	0.2099206457924327	0.1118768750695694	0.0232779451478332	0.4670237499322376
+C132_1105	0.2119312505422686	0.0	0.16201807956242	0.0	0.017806067054118	0.6082446028411931
+C164_1105	0.0259864921987725	0.1502759202205349	0.1812778689044335	0.0918685008183119	0.0136194468413656	0.5369717710165813
+C168_1205	0.1530420801382423	0.1234288852301885	0.3026424342201101	0.0915185962814795	0.0122212689486171	0.3171467351813622
+C168_2001	0.1648166183846449	0.0911943807210348	0.3577974257052881	0.0827876336485108	0.0609356243995416	0.2424683171409795
+C168_2301	0.1318252653777056	0.0575003341066452	0.3742573832624032	0.1814402356079233	0.0272817403370536	0.227695041308269
+C168_3001	0.1193939167807218	0.027229944760558	0.5154889745168106	0.0824454449989473	0.050554947321882	0.20488677162108
+C168_0202	0.1531930360224716	0.0494343482187553	0.3850514313353828	0.0557335272431036	0.0539642302808312	0.3026234268994552
+C168_0403	0.1563421402966765	0.0641660549463207	0.3726927919656733	0.1287295548202225	0.0698895138804477	0.2081799440906592
+C170_1205	0.0141806991437518	0.1219050451920799	0.2128037451419483	0.1770006969572798	0.0064126257859143	0.4676971877790255
+C170_2301	0.0347947344103215	0.0433469938453324	0.2883497711621929	0.2629014547832612	0.0222503492765959	0.3483566965222959
+C170_0202	0.105588065334627	0.0346220509887654	0.1696374379932602	0.1842279966119989	0.0578603755510798	0.4480640735202685
+C170_0402	0.0837772795531791	0.055928498471716	0.1430222121313436	0.2130531580706072	0.0774628143839655	0.4267560373891884
+C170_0403	0.0505306800979332	0.0646274195373361	0.1433617199224255	0.2219829307294091	0.0609276853055056	0.4585695644073901
+C195_2605	0.0389360467888924	0.1445436662817223	0.1472525318804095	0.2346309761668933	0.0259595690164063	0.408677209865676
+C237_2805	0.128084131799723	0.0206225005401943	0.3795781637291268	0.121547004962223	0.0672648638375707	0.2829033351311618