diff --git a/paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/v1_provisional_markers/per_sample.csv b/paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/v1_provisional_markers/per_sample.csv new file mode 100644 index 0000000000000000000000000000000000000000..bb755f950f5fb068246784782c35c579b2e0182b --- /dev/null +++ b/paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/v1_provisional_markers/per_sample.csv @@ -0,0 +1,937 @@ +dataset,state,sample_id,group,obs_parent,obs_state,obsthin_state,gen_parent,gen_state,obs_pct,obsthin_pct,gen_pct +dress,C1Q-high monocyte (reference),PBMC_DRESS1,DRESS|none,1388,56,53,705,15,4.034582132564841,3.8184438040345823,2.127659574468085 +dress,C1Q-high monocyte (reference),PBMC_HV,healthy|none,1949,37,32,1148,11,1.8984094407388403,1.641867624422781,0.9581881533101045 +dress,C1Q-high monocyte (reference),PBMC_T4_CTRL,unspecified|control,263,109,85,201,7,41.444866920152094,32.31939163498099,3.482587064676617 +dress,C1Q-high monocyte (reference),PBMC_T4_BACT,unspecified|bacterial_stim,302,196,181,811,37,64.90066225165563,59.93377483443709,4.562268803945746 +dress,C1Q-high monocyte (reference),DRESS_Day4_BACT,DRESS|bacterial_stim,126,103,100,526,29,81.74603174603175,79.36507936507937,5.513307984790875 +dress,C1Q-high monocyte (reference),DRESS_Day4_TOFA,DRESS|tofacitinib,159,73,70,273,9,45.911949685534594,44.0251572327044,3.2967032967032965 +dress,C1Q-high monocyte (reference),PBMC_POST2W,unspecified|none,298,12,8,129,2,4.026845637583893,2.684563758389262,1.550387596899225 +dress,Plasmablast (label),PBMC_DRESS1,DRESS|none,7592,43,43,5000,12,0.5663856691253951,0.5663856691253951,0.24 +dress,Plasmablast (label),PBMC_HV,healthy|none,8588,2,2,5000,2,0.02328830926874709,0.02328830926874709,0.04 +dress,Plasmablast (label),PBMC_T4_CTRL,unspecified|control,4936,46,46,5000,1,0.9319286871961102,0.9319286871961102,0.02 +dress,Plasmablast (label),PBMC_T4_BACT,unspecified|bacterial_stim,1978,64,64,5000,31,3.235591506572295,3.235591506572295,0.62 +dress,Plasmablast (label),DRESS_Day4_BACT,DRESS|bacterial_stim,1164,21,21,5000,27,1.8041237113402062,1.8041237113402062,0.54 +dress,Plasmablast (label),DRESS_Day4_TOFA,DRESS|tofacitinib,2880,11,11,5000,0,0.3819444444444444,0.3819444444444444,0.0 +dress,Plasmablast (label),PBMC_POST2W,unspecified|none,6574,0,0,5000,3,0.0,0.0,0.06 +dress,Plasmablast (markers),PBMC_DRESS1,DRESS|none,375,50,48,326,15,13.333333333333334,12.8,4.601226993865031 +dress,Plasmablast (markers),PBMC_HV,healthy|none,663,13,12,327,2,1.9607843137254901,1.8099547511312217,0.6116207951070336 +dress,Plasmablast (markers),PBMC_T4_CTRL,unspecified|control,288,48,47,172,1,16.666666666666668,16.319444444444443,0.5813953488372093 +dress,Plasmablast (markers),PBMC_T4_BACT,unspecified|bacterial_stim,121,61,60,313,22,50.413223140495866,49.586776859504134,7.0287539936102235 +dress,Plasmablast (markers),DRESS_Day4_BACT,DRESS|bacterial_stim,146,15,13,304,23,10.273972602739725,8.904109589041095,7.565789473684211 +dress,Plasmablast (markers),DRESS_Day4_TOFA,DRESS|tofacitinib,186,19,14,178,1,10.21505376344086,7.526881720430108,0.5617977528089888 +dress,Plasmablast (markers),PBMC_POST2W,unspecified|none,466,10,9,318,4,2.1459227467811157,1.9313304721030042,1.2578616352201257 +dress,Progenitor (label),PBMC_DRESS1,DRESS|none,7592,6,6,5000,7,0.07903055848261328,0.07903055848261328,0.14 +dress,Progenitor (label),PBMC_HV,healthy|none,8588,11,11,5000,3,0.12808570097810898,0.12808570097810898,0.06 +dress,Progenitor (label),PBMC_T4_CTRL,unspecified|control,4936,4,4,5000,0,0.08103727714748785,0.08103727714748785,0.0 +dress,Progenitor (label),PBMC_T4_BACT,unspecified|bacterial_stim,1978,10,10,5000,5,0.5055611729019212,0.5055611729019212,0.1 +dress,Progenitor (label),DRESS_Day4_BACT,DRESS|bacterial_stim,1164,1,1,5000,4,0.0859106529209622,0.0859106529209622,0.08 +dress,Progenitor (label),DRESS_Day4_TOFA,DRESS|tofacitinib,2880,0,0,5000,1,0.0,0.0,0.02 +dress,Progenitor (label),PBMC_POST2W,unspecified|none,6574,3,3,5000,0,0.04563431700638881,0.04563431700638881,0.0 +dress,Proliferating T (label),PBMC_DRESS1,DRESS|none,5394,2361,2361,3696,70,43.770856507230256,43.770856507230256,1.893939393939394 +dress,Proliferating T (label),PBMC_HV,healthy|none,4831,59,59,2875,5,1.2212792382529496,1.2212792382529496,0.17391304347826086 +dress,Proliferating T (label),PBMC_T4_CTRL,unspecified|control,4231,967,967,4550,89,22.85511699361853,22.85511699361853,1.956043956043956 +dress,Proliferating T (label),PBMC_T4_BACT,unspecified|bacterial_stim,1379,508,508,3621,232,36.838288614938364,36.838288614938364,6.407069870201601 +dress,Proliferating T (label),DRESS_Day4_BACT,DRESS|bacterial_stim,820,160,160,3963,554,19.51219512195122,19.51219512195122,13.97930860459248 +dress,Proliferating T (label),DRESS_Day4_TOFA,DRESS|tofacitinib,2530,20,20,4507,23,0.7905138339920948,0.7905138339920948,0.5103172842245396 +dress,Proliferating T (label),PBMC_POST2W,unspecified|none,5297,151,151,4366,28,2.8506701906739664,2.8506701906739664,0.641319285387082 +dress,ABC / DN2 B,PBMC_DRESS1,DRESS|none,375,25,21,326,12,6.666666666666667,5.6,3.6809815950920246 +dress,ABC / DN2 B,PBMC_HV,healthy|none,663,49,45,327,5,7.390648567119156,6.787330316742081,1.529051987767584 +dress,ABC / DN2 B,PBMC_T4_CTRL,unspecified|control,288,27,25,172,3,9.375,8.680555555555555,1.744186046511628 +dress,ABC / DN2 B,PBMC_T4_BACT,unspecified|bacterial_stim,121,13,11,313,9,10.743801652892563,9.090909090909092,2.8753993610223643 +dress,ABC / DN2 B,DRESS_Day4_BACT,DRESS|bacterial_stim,146,37,31,304,6,25.34246575342466,21.232876712328768,1.9736842105263157 +dress,ABC / DN2 B,DRESS_Day4_TOFA,DRESS|tofacitinib,186,31,27,178,1,16.666666666666668,14.516129032258064,0.5617977528089888 +dress,ABC / DN2 B,PBMC_POST2W,unspecified|none,466,39,33,318,3,8.369098712446352,7.081545064377682,0.9433962264150944 +dress,GZMK+ CD8 T,PBMC_DRESS1,DRESS|none,696,17,17,894,233,2.442528735632184,2.442528735632184,26.062639821029084 +dress,GZMK+ CD8 T,PBMC_HV,healthy|none,2085,764,764,1496,551,36.642685851318944,36.642685851318944,36.831550802139034 +dress,GZMK+ CD8 T,PBMC_T4_CTRL,unspecified|control,777,12,12,900,60,1.5444015444015444,1.5444015444015444,6.666666666666667 +dress,GZMK+ CD8 T,PBMC_T4_BACT,unspecified|bacterial_stim,207,4,4,816,61,1.932367149758454,1.932367149758454,7.4754901960784315 +dress,GZMK+ CD8 T,DRESS_Day4_BACT,DRESS|bacterial_stim,135,3,3,664,82,2.2222222222222223,2.2222222222222223,12.349397590361447 +dress,GZMK+ CD8 T,DRESS_Day4_TOFA,DRESS|tofacitinib,705,10,10,1190,26,1.4184397163120568,1.4184397163120568,2.1848739495798317 +dress,GZMK+ CD8 T,PBMC_POST2W,unspecified|none,1433,28,28,941,125,1.9539427773900908,1.9539427773900908,13.28374070138151 +dress,Cytotoxic CD4 T,PBMC_DRESS1,DRESS|none,2108,1,1,2477,12,0.04743833017077799,0.04743833017077799,0.4844570044408559 +dress,Cytotoxic CD4 T,PBMC_HV,healthy|none,2003,2,2,907,7,0.09985022466300549,0.09985022466300549,0.7717750826901875 +dress,Cytotoxic CD4 T,PBMC_T4_CTRL,unspecified|control,2246,0,0,3417,4,0.0,0.0,0.11706175007316359 +dress,Cytotoxic CD4 T,PBMC_T4_BACT,unspecified|bacterial_stim,610,1,1,2316,3,0.16393442622950818,0.16393442622950818,0.12953367875647667 +dress,Cytotoxic CD4 T,DRESS_Day4_BACT,DRESS|bacterial_stim,434,3,3,2472,9,0.6912442396313364,0.6912442396313364,0.3640776699029126 +dress,Cytotoxic CD4 T,DRESS_Day4_TOFA,DRESS|tofacitinib,1739,0,0,3191,2,0.0,0.0,0.06267627702914447 +dress,Cytotoxic CD4 T,PBMC_POST2W,unspecified|none,3401,2,2,3129,4,0.058806233460746836,0.058806233460746836,0.1278363694471077 +dress,MS1 monocyte,PBMC_DRESS1,DRESS|none,1388,357,166,705,79,25.720461095100866,11.959654178674352,11.205673758865249 +dress,MS1 monocyte,PBMC_HV,healthy|none,1949,271,129,1148,47,13.904566444330426,6.618778860954335,4.094076655052265 +dress,MS1 monocyte,PBMC_T4_CTRL,unspecified|control,263,5,3,201,3,1.9011406844106464,1.1406844106463878,1.492537313432836 +dress,MS1 monocyte,PBMC_T4_BACT,unspecified|bacterial_stim,302,63,46,811,24,20.86092715231788,15.2317880794702,2.9593094944512948 +dress,MS1 monocyte,DRESS_Day4_BACT,DRESS|bacterial_stim,126,65,54,526,27,51.58730158730159,42.857142857142854,5.133079847908745 +dress,MS1 monocyte,DRESS_Day4_TOFA,DRESS|tofacitinib,159,6,3,273,0,3.7735849056603774,1.8867924528301887,0.0 +dress,MS1 monocyte,PBMC_POST2W,unspecified|none,298,30,16,129,4,10.06711409395973,5.369127516778524,3.10077519379845 +dress,ISG-high monocyte,PBMC_DRESS1,DRESS|none,1388,55,26,705,6,3.962536023054755,1.8731988472622478,0.851063829787234 +dress,ISG-high monocyte,PBMC_HV,healthy|none,1949,91,49,1148,3,4.669061056952283,2.5141097998973834,0.2613240418118467 +dress,ISG-high monocyte,PBMC_T4_CTRL,unspecified|control,263,8,4,201,0,3.041825095057034,1.520912547528517,0.0 +dress,ISG-high monocyte,PBMC_T4_BACT,unspecified|bacterial_stim,302,21,8,811,0,6.953642384105961,2.6490066225165565,0.0 +dress,ISG-high monocyte,DRESS_Day4_BACT,DRESS|bacterial_stim,126,66,44,526,3,52.38095238095238,34.92063492063492,0.5703422053231939 +dress,ISG-high monocyte,DRESS_Day4_TOFA,DRESS|tofacitinib,159,1,0,273,0,0.6289308176100629,0.0,0.0 +dress,ISG-high monocyte,PBMC_POST2W,unspecified|none,298,0,0,129,0,0.0,0.0,0.0 +dress,Platelet-bound monocyte,PBMC_DRESS1,DRESS|none,1388,20,12,705,2,1.440922190201729,0.8645533141210374,0.28368794326241137 +dress,Platelet-bound monocyte,PBMC_HV,healthy|none,1949,17,13,1148,2,0.8722421754746024,0.6670087224217548,0.17421602787456447 +dress,Platelet-bound monocyte,PBMC_T4_CTRL,unspecified|control,263,0,0,201,0,0.0,0.0,0.0 +dress,Platelet-bound monocyte,PBMC_T4_BACT,unspecified|bacterial_stim,302,0,0,811,2,0.0,0.0,0.2466091245376079 +dress,Platelet-bound monocyte,DRESS_Day4_BACT,DRESS|bacterial_stim,126,0,0,526,0,0.0,0.0,0.0 +dress,Platelet-bound monocyte,DRESS_Day4_TOFA,DRESS|tofacitinib,159,0,0,273,0,0.0,0.0,0.0 +dress,Platelet-bound monocyte,PBMC_POST2W,unspecified|none,298,4,1,129,0,1.342281879194631,0.33557046979865773,0.0 +dress,Granulocyte-like (LDG),PBMC_DRESS1,DRESS|none,7592,232,222,5000,0,3.0558482613277134,2.9241306638566913,0.0 +dress,Granulocyte-like (LDG),PBMC_HV,healthy|none,8588,159,152,5000,0,1.8514205868653937,1.7699115044247788,0.0 +dress,Granulocyte-like (LDG),PBMC_T4_CTRL,unspecified|control,4936,4,4,5000,0,0.08103727714748785,0.08103727714748785,0.0 +dress,Granulocyte-like (LDG),PBMC_T4_BACT,unspecified|bacterial_stim,1978,13,13,5000,0,0.6572295247724975,0.6572295247724975,0.0 +dress,Granulocyte-like (LDG),DRESS_Day4_BACT,DRESS|bacterial_stim,1164,3,3,5000,0,0.25773195876288657,0.25773195876288657,0.0 +dress,Granulocyte-like (LDG),DRESS_Day4_TOFA,DRESS|tofacitinib,2880,6,6,5000,0,0.20833333333333334,0.20833333333333334,0.0 +dress,Granulocyte-like (LDG),PBMC_POST2W,unspecified|none,6574,4,4,5000,0,0.06084575600851841,0.06084575600851841,0.0 +kawasaki,C1Q-high monocyte (reference),P1_before,KD_before,518,75,75,255,3,14.478764478764479,14.478764478764479,1.1764705882352942 +kawasaki,C1Q-high monocyte (reference),P1_after,KD_after,2024,163,163,817,11,8.053359683794467,8.053359683794467,1.346389228886169 +kawasaki,C1Q-high monocyte (reference),P2_before,KD_before,641,49,49,326,0,7.644305772230889,7.644305772230889,0.0 +kawasaki,C1Q-high monocyte (reference),P2_after,KD_after,174,12,12,166,1,6.896551724137931,6.896551724137931,0.6024096385542169 +kawasaki,C1Q-high monocyte (reference),P3_before,KD_before,674,43,43,302,1,6.379821958456973,6.379821958456973,0.33112582781456956 +kawasaki,C1Q-high monocyte (reference),P3_after,KD_after,236,4,4,105,2,1.694915254237288,1.694915254237288,1.9047619047619047 +kawasaki,C1Q-high monocyte (reference),P4_before,KD_before,1169,90,90,687,4,7.698887938408896,7.698887938408896,0.5822416302765647 +kawasaki,C1Q-high monocyte (reference),P4_after,KD_after,246,7,7,236,1,2.845528455284553,2.845528455284553,0.423728813559322 +kawasaki,C1Q-high monocyte (reference),P5_before,KD_before,1388,48,48,757,2,3.4582132564841497,3.4582132564841497,0.26420079260237783 +kawasaki,C1Q-high monocyte (reference),P5_after,KD_after,721,8,8,551,0,1.1095700416088765,1.1095700416088765,0.0 +kawasaki,C1Q-high monocyte (reference),P6_before,KD_before,1533,39,39,2123,11,2.544031311154599,2.544031311154599,0.5181347150259067 +kawasaki,C1Q-high monocyte (reference),P6_after,KD_after,603,20,20,804,6,3.316749585406302,3.316749585406302,0.746268656716418 +kawasaki,C1Q-high monocyte (reference),H1_health,HC,501,21,21,340,0,4.191616766467066,4.191616766467066,0.0 +kawasaki,C1Q-high monocyte (reference),H2_health,HC,240,12,12,200,0,5.0,5.0,0.0 +kawasaki,C1Q-high monocyte (reference),H3_health,HC,382,12,12,258,1,3.141361256544503,3.141361256544503,0.3875968992248062 +kawasaki,Plasmablast (label),P1_before,KD_before,5953,97,97,5000,9,1.6294305392239208,1.6294305392239208,0.18 +kawasaki,Plasmablast (label),P1_after,KD_after,7239,85,85,5000,25,1.174195330846802,1.174195330846802,0.5 +kawasaki,Plasmablast (label),P2_before,KD_before,5973,73,73,5000,3,1.2221664155365812,1.2221664155365812,0.06 +kawasaki,Plasmablast (label),P2_after,KD_after,9872,79,79,5000,14,0.8002431118314425,0.8002431118314425,0.28 +kawasaki,Plasmablast (label),P3_before,KD_before,6185,27,27,5000,13,0.43654001616814875,0.43654001616814875,0.26 +kawasaki,Plasmablast (label),P3_after,KD_after,7215,21,21,5000,8,0.2910602910602911,0.2910602910602911,0.16 +kawasaki,Plasmablast (label),P4_before,KD_before,5658,195,195,5000,35,3.4464475079533403,3.4464475079533403,0.7 +kawasaki,Plasmablast (label),P4_after,KD_after,10305,581,581,5000,29,5.638039786511402,5.638039786511402,0.58 +kawasaki,Plasmablast (label),P5_before,KD_before,8783,52,52,5000,6,0.5920528293293863,0.5920528293293863,0.12 +kawasaki,Plasmablast (label),P5_after,KD_after,10203,176,176,5000,10,1.7249828481819074,1.7249828481819074,0.2 +kawasaki,Plasmablast (label),P6_before,KD_before,4165,54,54,5000,10,1.296518607442977,1.296518607442977,0.2 +kawasaki,Plasmablast (label),P6_after,KD_after,5608,281,281,5000,20,5.010699001426533,5.010699001426533,0.4 +kawasaki,Plasmablast (label),H1_health,HC,5687,51,51,5000,10,0.8967821346931598,0.8967821346931598,0.2 +kawasaki,Plasmablast (label),H2_health,HC,5076,17,17,5000,6,0.33490937746256894,0.33490937746256894,0.12 +kawasaki,Plasmablast (label),H3_health,HC,5440,48,48,5000,8,0.8823529411764706,0.8823529411764706,0.16 +kawasaki,Plasmablast (markers),P1_before,KD_before,1884,100,100,2481,11,5.307855626326964,5.307855626326964,0.4433696090286175 +kawasaki,Plasmablast (markers),P1_after,KD_after,810,115,115,758,25,14.197530864197532,14.197530864197532,3.2981530343007917 +kawasaki,Plasmablast (markers),P2_before,KD_before,1943,89,89,2110,4,4.580545548121462,4.580545548121462,0.1895734597156398 +kawasaki,Plasmablast (markers),P2_after,KD_after,1271,93,93,699,16,7.317073170731708,7.317073170731708,2.2889842632331905 +kawasaki,Plasmablast (markers),P3_before,KD_before,1611,37,37,1562,16,2.2967101179391682,2.2967101179391682,1.0243277848911652 +kawasaki,Plasmablast (markers),P3_after,KD_after,929,44,44,382,8,4.736275565123789,4.736275565123789,2.094240837696335 +kawasaki,Plasmablast (markers),P4_before,KD_before,2055,207,207,1851,40,10.072992700729927,10.072992700729927,2.1609940572663424 +kawasaki,Plasmablast (markers),P4_after,KD_after,1692,367,367,1684,35,21.6903073286052,21.6903073286052,2.0783847980997625 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(label),P1_after,KD_after,7239,5,5,5000,3,0.06907031357922365,0.06907031357922365,0.06 +kawasaki,Progenitor (label),P2_before,KD_before,5973,3,3,5000,2,0.050226017076845805,0.050226017076845805,0.04 +kawasaki,Progenitor (label),P2_after,KD_after,9872,2,2,5000,1,0.02025931928687196,0.02025931928687196,0.02 +kawasaki,Progenitor (label),P3_before,KD_before,6185,8,8,5000,5,0.1293451899757478,0.1293451899757478,0.1 +kawasaki,Progenitor (label),P3_after,KD_after,7215,5,5,5000,7,0.0693000693000693,0.0693000693000693,0.14 +kawasaki,Progenitor (label),P4_before,KD_before,5658,14,14,5000,16,0.24743725698126545,0.24743725698126545,0.32 +kawasaki,Progenitor (label),P4_after,KD_after,10305,41,41,5000,5,0.3978651140223193,0.3978651140223193,0.1 +kawasaki,Progenitor (label),P5_before,KD_before,8783,7,7,5000,1,0.079699419332802,0.079699419332802,0.02 +kawasaki,Progenitor (label),P5_after,KD_after,10203,52,52,5000,5,0.5096540233264726,0.5096540233264726,0.1 +kawasaki,Progenitor (label),P6_before,KD_before,4165,4,4,5000,14,0.09603841536614646,0.09603841536614646,0.28 +kawasaki,Progenitor (label),P6_after,KD_after,5608,5,5,5000,4,0.0891583452211127,0.0891583452211127,0.08 +kawasaki,Progenitor (label),H1_health,HC,5687,4,4,5000,0,0.0703358537014243,0.0703358537014243,0.0 +kawasaki,Progenitor (label),H2_health,HC,5076,2,2,5000,0,0.039401103230890466,0.039401103230890466,0.0 +kawasaki,Progenitor (label),H3_health,HC,5440,1,1,5000,0,0.01838235294117647,0.01838235294117647,0.0 +kawasaki,Proliferating T (label),P1_before,KD_before,2730,20,20,2085,3,0.7326007326007326,0.7326007326007326,0.14388489208633093 +kawasaki,Proliferating T (label),P1_after,KD_after,3321,92,92,2991,38,2.7702499247214694,2.7702499247214694,1.2704781009695754 +kawasaki,Proliferating T (label),P2_before,KD_before,3099,30,30,2426,28,0.968054211035818,0.968054211035818,1.1541632316570487 +kawasaki,Proliferating T (label),P2_after,KD_after,7419,149,149,3898,25,2.008356921417981,2.008356921417981,0.6413545407901488 +kawasaki,Proliferating T (label),P3_before,KD_before,3612,31,31,2986,24,0.858250276854928,0.858250276854928,0.8037508372404555 +kawasaki,Proliferating T (label),P3_after,KD_after,4944,35,35,4405,35,0.7079288025889967,0.7079288025889967,0.7945516458569807 +kawasaki,Proliferating T (label),P4_before,KD_before,2065,24,24,2263,32,1.162227602905569,1.162227602905569,1.4140521431727795 +kawasaki,Proliferating T (label),P4_after,KD_after,6753,243,243,2916,18,3.598400710795202,3.598400710795202,0.6172839506172839 +kawasaki,Proliferating T (label),P5_before,KD_before,2994,10,10,1590,7,0.33400133600534404,0.33400133600534404,0.44025157232704404 +kawasaki,Proliferating T (label),P5_after,KD_after,5421,176,176,2890,21,3.2466334624608004,3.2466334624608004,0.726643598615917 +kawasaki,Proliferating T (label),P6_before,KD_before,1866,43,43,2023,31,2.304394426580922,2.304394426580922,1.532377656945131 +kawasaki,Proliferating T (label),P6_after,KD_after,2673,129,129,2825,18,4.8260381593714925,4.8260381593714925,0.6371681415929203 +kawasaki,Proliferating T (label),H1_health,HC,3297,101,101,2913,16,3.0633909614801333,3.0633909614801333,0.5492619292825266 +kawasaki,Proliferating T (label),H2_health,HC,3260,46,46,2870,15,1.4110429447852761,1.4110429447852761,0.5226480836236934 +kawasaki,Proliferating T (label),H3_health,HC,3578,17,17,3327,19,0.47512576858580213,0.47512576858580213,0.5710850616170724 +kawasaki,ABC / DN2 B,P1_before,KD_before,1884,35,35,2481,41,1.8577494692144374,1.8577494692144374,1.652559451833938 +kawasaki,ABC / DN2 B,P1_after,KD_after,810,113,113,758,13,13.950617283950617,13.950617283950617,1.7150395778364116 +kawasaki,ABC / DN2 B,P2_before,KD_before,1943,101,101,2110,49,5.198147195059187,5.198147195059187,2.322274881516588 +kawasaki,ABC / DN2 B,P2_after,KD_after,1271,55,55,699,13,4.327301337529504,4.327301337529504,1.859799713876967 +kawasaki,ABC / DN2 B,P3_before,KD_before,1611,75,75,1562,20,4.655493482309125,4.655493482309125,1.2804097311139564 +kawasaki,ABC / DN2 B,P3_after,KD_after,929,39,39,382,11,4.198062432723359,4.198062432723359,2.8795811518324608 +kawasaki,ABC / DN2 B,P4_before,KD_before,2055,100,100,1851,42,4.866180048661801,4.866180048661801,2.2690437601296596 +kawasaki,ABC / DN2 B,P4_after,KD_after,1692,33,33,1684,33,1.950354609929078,1.950354609929078,1.9596199524940618 +kawasaki,ABC / DN2 B,P5_before,KD_before,3609,103,103,2380,51,2.8539761706844002,2.8539761706844002,2.142857142857143 +kawasaki,ABC / DN2 B,P5_after,KD_after,1234,27,27,1122,24,2.1880064829821717,2.1880064829821717,2.1390374331550803 +kawasaki,ABC / DN2 B,P6_before,KD_before,532,43,43,618,10,8.082706766917294,8.082706766917294,1.6181229773462784 +kawasaki,ABC / DN2 B,P6_after,KD_after,631,16,16,1085,22,2.535657686212361,2.535657686212361,2.0276497695852536 +kawasaki,ABC / DN2 B,H1_health,HC,1317,57,57,1490,23,4.328018223234624,4.328018223234624,1.5436241610738255 +kawasaki,ABC / DN2 B,H2_health,HC,1234,64,64,1778,30,5.186385737439222,5.186385737439222,1.687289088863892 +kawasaki,ABC / DN2 B,H3_health,HC,765,46,46,998,15,6.0130718954248366,6.0130718954248366,1.503006012024048 +kawasaki,GZMK+ CD8 T,P1_before,KD_before,650,11,11,494,58,1.6923076923076923,1.6923076923076923,11.740890688259109 +kawasaki,GZMK+ CD8 T,P1_after,KD_after,486,40,40,952,157,8.23045267489712,8.23045267489712,16.491596638655462 +kawasaki,GZMK+ CD8 T,P2_before,KD_before,1267,30,30,661,99,2.367797947908445,2.367797947908445,14.97730711043873 +kawasaki,GZMK+ CD8 T,P2_after,KD_after,2474,101,101,861,148,4.082457558609539,4.082457558609539,17.18931475029036 +kawasaki,GZMK+ CD8 T,P3_before,KD_before,943,49,49,761,68,5.1961823966065745,5.1961823966065745,8.935611038107753 +kawasaki,GZMK+ CD8 T,P3_after,KD_after,1339,61,61,702,70,4.5556385362210605,4.5556385362210605,9.971509971509972 +kawasaki,GZMK+ CD8 T,P4_before,KD_before,599,16,16,596,83,2.671118530884808,2.671118530884808,13.926174496644295 +kawasaki,GZMK+ CD8 T,P4_after,KD_after,899,35,35,665,108,3.8932146829810903,3.8932146829810903,16.2406015037594 +kawasaki,GZMK+ CD8 T,P5_before,KD_before,741,25,25,523,101,3.3738191632928474,3.3738191632928474,19.311663479923517 +kawasaki,GZMK+ CD8 T,P5_after,KD_after,908,47,47,846,161,5.176211453744493,5.176211453744493,19.030732860520093 +kawasaki,GZMK+ CD8 T,P6_before,KD_before,730,21,21,483,79,2.8767123287671232,2.8767123287671232,16.356107660455486 +kawasaki,GZMK+ CD8 T,P6_after,KD_after,683,72,72,764,169,10.541727672035138,10.541727672035138,22.12041884816754 +kawasaki,GZMK+ CD8 T,H1_health,HC,1480,53,53,1045,196,3.581081081081081,3.581081081081081,18.75598086124402 +kawasaki,GZMK+ CD8 T,H2_health,HC,903,62,62,901,113,6.866002214839424,6.866002214839424,12.541620421753606 +kawasaki,GZMK+ CD8 T,H3_health,HC,1269,123,123,1116,274,9.692671394799055,9.692671394799055,24.551971326164875 +kawasaki,Cytotoxic CD4 T,P1_before,KD_before,1466,1,1,1447,5,0.06821282401091405,0.06821282401091405,0.3455425017277125 +kawasaki,Cytotoxic CD4 T,P1_after,KD_after,2142,0,0,1640,3,0.0,0.0,0.18292682926829268 +kawasaki,Cytotoxic CD4 T,P2_before,KD_before,1471,2,2,1518,6,0.13596193065941536,0.13596193065941536,0.3952569169960474 +kawasaki,Cytotoxic CD4 T,P2_after,KD_after,3766,86,86,2724,4,2.2835900159320235,2.2835900159320235,0.14684287812041116 +kawasaki,Cytotoxic CD4 T,P3_before,KD_before,2255,0,0,1997,2,0.0,0.0,0.100150225338007 +kawasaki,Cytotoxic CD4 T,P3_after,KD_after,3252,0,0,3551,4,0.0,0.0,0.11264432554210081 +kawasaki,Cytotoxic CD4 T,P4_before,KD_before,1193,1,1,1401,3,0.08382229673093043,0.08382229673093043,0.21413276231263384 +kawasaki,Cytotoxic CD4 T,P4_after,KD_after,2667,23,23,1994,8,0.8623922009748781,0.8623922009748781,0.4012036108324975 +kawasaki,Cytotoxic CD4 T,P5_before,KD_before,1705,0,0,800,6,0.0,0.0,0.75 +kawasaki,Cytotoxic CD4 T,P5_after,KD_after,2357,27,27,1652,17,1.1455239711497667,1.1455239711497667,1.0290556900726393 +kawasaki,Cytotoxic CD4 T,P6_before,KD_before,858,1,1,1353,5,0.11655011655011654,0.11655011655011654,0.36954915003695493 +kawasaki,Cytotoxic CD4 T,P6_after,KD_after,872,4,4,1745,14,0.45871559633027525,0.45871559633027525,0.8022922636103151 +kawasaki,Cytotoxic CD4 T,H1_health,HC,1405,3,3,1419,11,0.21352313167259787,0.21352313167259787,0.7751937984496124 +kawasaki,Cytotoxic CD4 T,H2_health,HC,1781,2,2,1696,0,0.11229646266142616,0.11229646266142616,0.0 +kawasaki,Cytotoxic CD4 T,H3_health,HC,1666,13,13,1649,6,0.78031212484994,0.78031212484994,0.3638568829593693 +kawasaki,MS1 monocyte,P1_before,KD_before,518,66,66,255,20,12.741312741312742,12.741312741312742,7.8431372549019605 +kawasaki,MS1 monocyte,P1_after,KD_after,2024,193,193,817,97,9.535573122529645,9.535573122529645,11.872705018359854 +kawasaki,MS1 monocyte,P2_before,KD_before,641,168,168,326,29,26.209048361934478,26.209048361934478,8.895705521472392 +kawasaki,MS1 monocyte,P2_after,KD_after,174,31,31,166,13,17.816091954022987,17.816091954022987,7.831325301204819 +kawasaki,MS1 monocyte,P3_before,KD_before,674,72,72,302,34,10.682492581602373,10.682492581602373,11.258278145695364 +kawasaki,MS1 monocyte,P3_after,KD_after,236,28,28,105,13,11.864406779661017,11.864406779661017,12.380952380952381 +kawasaki,MS1 monocyte,P4_before,KD_before,1169,430,430,687,172,36.783575705731394,36.783575705731394,25.036390101892284 +kawasaki,MS1 monocyte,P4_after,KD_after,246,19,19,236,28,7.723577235772358,7.723577235772358,11.864406779661017 +kawasaki,MS1 monocyte,P5_before,KD_before,1388,783,783,757,120,56.4121037463977,56.4121037463977,15.852047556142669 +kawasaki,MS1 monocyte,P5_after,KD_after,721,162,162,551,72,22.46879334257975,22.46879334257975,13.067150635208712 +kawasaki,MS1 monocyte,P6_before,KD_before,1533,1123,1123,2123,712,73.25505544683627,73.25505544683627,33.5374470089496 +kawasaki,MS1 monocyte,P6_after,KD_after,603,138,138,804,93,22.885572139303484,22.885572139303484,11.567164179104477 +kawasaki,MS1 monocyte,H1_health,HC,501,16,16,340,11,3.193612774451098,3.193612774451098,3.235294117647059 +kawasaki,MS1 monocyte,H2_health,HC,240,24,24,200,15,10.0,10.0,7.5 +kawasaki,MS1 monocyte,H3_health,HC,382,10,10,258,13,2.6178010471204187,2.6178010471204187,5.038759689922481 +kawasaki,ISG-high monocyte,P1_before,KD_before,518,7,7,255,1,1.3513513513513513,1.3513513513513513,0.39215686274509803 +kawasaki,ISG-high monocyte,P1_after,KD_after,2024,1431,1431,817,241,70.70158102766798,70.70158102766798,29.498164014687884 +kawasaki,ISG-high monocyte,P2_before,KD_before,641,155,155,326,1,24.180967238689547,24.180967238689547,0.3067484662576687 +kawasaki,ISG-high monocyte,P2_after,KD_after,174,21,21,166,3,12.068965517241379,12.068965517241379,1.8072289156626506 +kawasaki,ISG-high monocyte,P3_before,KD_before,674,32,32,302,0,4.747774480712166,4.747774480712166,0.0 +kawasaki,ISG-high monocyte,P3_after,KD_after,236,27,27,105,0,11.440677966101696,11.440677966101696,0.0 +kawasaki,ISG-high monocyte,P4_before,KD_before,1169,58,58,687,4,4.961505560307955,4.961505560307955,0.5822416302765647 +kawasaki,ISG-high monocyte,P4_after,KD_after,246,13,13,236,0,5.284552845528455,5.284552845528455,0.0 +kawasaki,ISG-high monocyte,P5_before,KD_before,1388,41,41,757,4,2.9538904899135447,2.9538904899135447,0.5284015852047557 +kawasaki,ISG-high monocyte,P5_after,KD_after,721,19,19,551,0,2.635228848821082,2.635228848821082,0.0 +kawasaki,ISG-high monocyte,P6_before,KD_before,1533,102,102,2123,21,6.653620352250489,6.653620352250489,0.9891662741403674 +kawasaki,ISG-high monocyte,P6_after,KD_after,603,96,96,804,2,15.92039800995025,15.92039800995025,0.24875621890547264 +kawasaki,ISG-high monocyte,H1_health,HC,501,161,161,340,1,32.13572854291417,32.13572854291417,0.29411764705882354 +kawasaki,ISG-high monocyte,H2_health,HC,240,71,71,200,0,29.583333333333332,29.583333333333332,0.0 +kawasaki,ISG-high monocyte,H3_health,HC,382,22,22,258,2,5.7591623036649215,5.7591623036649215,0.7751937984496124 +kawasaki,Platelet-bound monocyte,P1_before,KD_before,518,1,1,255,0,0.19305019305019305,0.19305019305019305,0.0 +kawasaki,Platelet-bound monocyte,P1_after,KD_after,2024,64,64,817,3,3.1620553359683794,3.1620553359683794,0.3671970624235006 +kawasaki,Platelet-bound monocyte,P2_before,KD_before,641,3,3,326,1,0.46801872074882994,0.46801872074882994,0.3067484662576687 +kawasaki,Platelet-bound monocyte,P2_after,KD_after,174,1,1,166,1,0.5747126436781609,0.5747126436781609,0.6024096385542169 +kawasaki,Platelet-bound 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(label),aSLE7,aSLE,4561,5,5,3000,1,0.10962508221881166,0.10962508221881166,0.03333333333333333 +sle,Proliferating T (label),cSLE1,cSLE,1526,18,18,867,10,1.1795543905635648,1.1795543905635648,1.1534025374855825 +sle,Proliferating T (label),cSLE2,cSLE,2556,10,10,1464,3,0.39123630672926446,0.39123630672926446,0.20491803278688525 +sle,Proliferating T (label),cSLE3,cSLE,1772,37,37,1152,5,2.0880361173814896,2.0880361173814896,0.4340277777777778 +sle,Proliferating T (label),cSLE4,cSLE,3039,4,4,1494,2,0.1316222441592629,0.1316222441592629,0.13386880856760375 +sle,Proliferating T (label),cSLE5,cSLE,2194,8,8,1669,0,0.3646308113035551,0.3646308113035551,0.0 +sle,Proliferating T (label),cSLE6,cSLE,2357,5,5,1559,0,0.21213406873143828,0.21213406873143828,0.0 +sle,Proliferating T (label),cSLE7,cSLE,2265,15,15,1648,4,0.6622516556291391,0.6622516556291391,0.24271844660194175 +sle,Proliferating T (label),cSLE8,cSLE,5081,100,100,2386,4,1.96811651249754,1.96811651249754,0.16764459346186086 +sle,Proliferating T (label),cSLE10,cSLE,7004,3,3,1834,3,0.04283266704740148,0.04283266704740148,0.16357688113413305 +sle,Proliferating T (label),cSLE11,cSLE,2678,113,113,1367,57,4.219566840926064,4.219566840926064,4.169714703730797 +sle,Proliferating T (label),cSLE9,cSLE,9044,10,10,2145,2,0.11057054400707651,0.11057054400707651,0.09324009324009325 +sle,Proliferating T (label),cHD1,cHD,7951,21,21,1692,1,0.26411772104137843,0.26411772104137843,0.0591016548463357 +sle,Proliferating T (label),cSLE12,cSLE,2268,17,17,2229,1,0.7495590828924162,0.7495590828924162,0.04486316733961418 +sle,Proliferating T (label),cSLE13,cSLE,3129,8,8,1733,2,0.2556727388942154,0.2556727388942154,0.1154068090017311 +sle,Proliferating T (label),cSLE14,cSLE,1874,26,26,1397,12,1.3874066168623265,1.3874066168623265,0.8589835361488904 +sle,Proliferating T (label),cSLE15,cSLE,5348,1,1,2467,0,0.018698578908002993,0.018698578908002993,0.0 +sle,Proliferating T (label),cSLE16,cSLE,4261,13,13,2512,2,0.30509270124383947,0.30509270124383947,0.07961783439490445 +sle,Proliferating T (label),cSLE17,cSLE,3296,11,11,1834,4,0.3337378640776699,0.3337378640776699,0.21810250817884405 +sle,Proliferating T (label),cHD2,cHD,6503,13,13,2211,1,0.1999077348915885,0.1999077348915885,0.045228403437358664 +sle,Proliferating T (label),cHD3,cHD,5667,3,3,2153,4,0.05293806246691371,0.05293806246691371,0.18578727357176034 +sle,Proliferating T (label),cSLE18,cSLE,983,230,230,1356,44,23.397761953204476,23.397761953204476,3.2448377581120944 +sle,Proliferating T (label),cSLE19,cSLE,4640,237,237,2021,36,5.107758620689655,5.107758620689655,1.781296387926769 +sle,Proliferating T (label),cSLE20,cSLE,4210,9,9,2232,0,0.21377672209026127,0.21377672209026127,0.0 +sle,Proliferating T (label),cSLE21,cSLE,1526,63,63,1873,40,4.128440366972477,4.128440366972477,2.1356113187399894 +sle,Proliferating T (label),cSLE22,cSLE,3157,1,1,2318,1,0.031675641431738996,0.031675641431738996,0.04314063848144953 +sle,Proliferating T (label),cSLE23,cSLE,1973,92,92,1905,59,4.66294982260517,4.66294982260517,3.0971128608923886 +sle,Proliferating T (label),cHD4,cHD,3881,13,13,2241,2,0.33496521515073435,0.33496521515073435,0.0892458723784025 +sle,Proliferating T (label),cHD5,cHD,3174,5,5,1854,3,0.1575299306868305,0.1575299306868305,0.16181229773462782 +sle,Proliferating T (label),cSLE24,cSLE,3114,60,60,1580,25,1.9267822736030829,1.9267822736030829,1.5822784810126582 +sle,Proliferating T (label),cSLE25,cSLE,2197,15,15,1408,0,0.6827492034592626,0.6827492034592626,0.0 +sle,Proliferating T (label),cSLE26,cSLE,3131,66,66,1656,14,2.1079527307569466,2.1079527307569466,0.8454106280193237 +sle,Proliferating T (label),cSLE27,cSLE,3172,253,253,1751,67,7.976040353089534,7.976040353089534,3.8263849229011995 +sle,Proliferating T (label),cSLE28,cSLE,1667,17,17,1467,7,1.0197960407918416,1.0197960407918416,0.47716428084526247 +sle,Proliferating T (label),cSLE29,cSLE,4660,8,8,2383,2,0.17167381974248927,0.17167381974248927,0.0839278220730172 +sle,Proliferating T (label),cHD6,cHD,6147,8,8,2382,1,0.13014478607450788,0.13014478607450788,0.041981528127623846 +sle,Proliferating T (label),cHD7,cHD,5125,18,18,2345,1,0.35121951219512193,0.35121951219512193,0.042643923240938165 +sle,Proliferating T (label),cSLE30,cSLE,5291,22,22,2235,3,0.4158004158004158,0.4158004158004158,0.1342281879194631 +sle,Proliferating T (label),cSLE31,cSLE,3141,13,13,2325,8,0.413880929640242,0.413880929640242,0.34408602150537637 +sle,Proliferating T (label),cSLE32,cSLE,4004,30,30,1858,9,0.7492507492507493,0.7492507492507493,0.48439181916038754 +sle,Proliferating T (label),cSLE33,cSLE,5419,17,17,2031,0,0.3137110167927662,0.3137110167927662,0.0 +sle,Proliferating T (label),cHD10,cHD,4409,4,4,2158,1,0.09072352007257882,0.09072352007257882,0.04633920296570899 +sle,Proliferating T (label),cHD11,cHD,4206,8,8,2092,0,0.1902044698050404,0.1902044698050404,0.0 +sle,Proliferating T (label),cHD8,cHD,4603,10,10,1981,0,0.21724961981316532,0.21724961981316532,0.0 +sle,Proliferating T (label),cHD9,cHD,4414,14,14,2012,0,0.31717263253285,0.31717263253285,0.0 +sle,Proliferating T (label),aHD1,aHD,5490,14,14,2237,1,0.2550091074681239,0.2550091074681239,0.044702726866338846 +sle,Proliferating T (label),aHD3,aHD,3347,6,6,1530,4,0.179265013444876,0.179265013444876,0.26143790849673204 +sle,Proliferating T (label),aSLE1,aSLE,2686,83,83,1726,49,3.090096798212956,3.090096798212956,2.8389339513325607 +sle,Proliferating T (label),aSLE2,aSLE,1834,89,89,1305,43,4.85278080697928,4.85278080697928,3.2950191570881224 +sle,Proliferating T (label),aSLE3,aSLE,4931,27,27,2203,4,0.547556276617319,0.547556276617319,0.18157058556513844 +sle,Proliferating T (label),aSLE4,aSLE,3379,5,5,1823,2,0.1479727730097662,0.1479727730097662,0.10970927043335162 +sle,Proliferating T (label),aHD4,aHD,4469,11,11,2166,2,0.24614007607965988,0.24614007607965988,0.09233610341643583 +sle,Proliferating T (label),aHD5,aHD,4134,15,15,1716,3,0.36284470246734396,0.36284470246734396,0.17482517482517482 +sle,Proliferating T (label),aHD6,aHD,10264,23,23,2616,3,0.2240841777084957,0.2240841777084957,0.11467889908256881 +sle,Proliferating T (label),aSLE5,aSLE,3399,27,27,1980,6,0.794351279788173,0.794351279788173,0.30303030303030304 +sle,Proliferating T (label),aSLE6,aSLE,2446,4,4,2036,1,0.1635322976287817,0.1635322976287817,0.04911591355599214 +sle,Proliferating T (label),aSLE7,aSLE,2055,0,0,1906,3,0.0,0.0,0.15739769150052466 +sle,ABC / DN2 B,cSLE1,cSLE,1444,45,45,1224,8,3.1163434903047094,3.1163434903047094,0.6535947712418301 +sle,ABC / DN2 B,cSLE2,cSLE,1025,25,25,648,3,2.4390243902439024,2.4390243902439024,0.46296296296296297 +sle,ABC / DN2 B,cSLE3,cSLE,427,21,21,367,4,4.918032786885246,4.918032786885246,1.0899182561307903 +sle,ABC / DN2 B,cSLE4,cSLE,457,21,21,246,2,4.595185995623632,4.595185995623632,0.8130081300813008 +sle,ABC / DN2 B,cSLE5,cSLE,402,4,4,353,3,0.9950248756218906,0.9950248756218906,0.8498583569405099 +sle,ABC / DN2 B,cSLE6,cSLE,407,3,3,224,3,0.7371007371007371,0.7371007371007371,1.3392857142857142 +sle,ABC / DN2 B,cSLE7,cSLE,404,21,21,359,1,5.198019801980198,5.198019801980198,0.2785515320334262 +sle,ABC / DN2 B,cSLE8,cSLE,570,63,63,326,2,11.052631578947368,11.052631578947368,0.6134969325153374 +sle,ABC / DN2 B,cSLE10,cSLE,1491,96,96,353,1,6.438631790744467,6.438631790744467,0.28328611898017 +sle,ABC / DN2 B,cSLE11,cSLE,1734,75,75,169,2,4.325259515570934,4.325259515570934,1.183431952662722 +sle,ABC / DN2 B,cSLE9,cSLE,674,24,24,189,0,3.5608308605341246,3.5608308605341246,0.0 +sle,ABC / DN2 B,cHD1,cHD,1913,46,46,455,7,2.4046001045478307,2.4046001045478307,1.5384615384615385 +sle,ABC / DN2 B,cSLE12,cSLE,114,13,13,109,0,11.403508771929825,11.403508771929825,0.0 +sle,ABC / DN2 B,cSLE13,cSLE,718,75,75,553,3,10.445682451253482,10.445682451253482,0.5424954792043399 +sle,ABC / DN2 B,cSLE14,cSLE,29,7,7,73,0,24.137931034482758,24.137931034482758,0.0 +sle,ABC / DN2 B,cSLE15,cSLE,513,20,20,289,0,3.898635477582846,3.898635477582846,0.0 +sle,ABC / DN2 B,cSLE16,cSLE,615,105,105,289,1,17.073170731707318,17.073170731707318,0.3460207612456747 +sle,ABC / DN2 B,cSLE17,cSLE,1056,120,120,530,0,11.363636363636363,11.363636363636363,0.0 +sle,ABC / DN2 B,cHD2,cHD,1305,80,80,489,3,6.130268199233717,6.130268199233717,0.6134969325153374 +sle,ABC / DN2 B,cHD3,cHD,802,36,36,285,0,4.488778054862843,4.488778054862843,0.0 +sle,ABC / DN2 B,cSLE18,cSLE,939,165,165,680,3,17.57188498402556,17.57188498402556,0.4411764705882353 +sle,ABC / DN2 B,cSLE19,cSLE,442,57,57,242,1,12.895927601809955,12.895927601809955,0.4132231404958678 +sle,ABC / DN2 B,cSLE20,cSLE,260,5,5,342,2,1.9230769230769231,1.9230769230769231,0.5847953216374269 +sle,ABC / DN2 B,cSLE21,cSLE,407,112,112,449,4,27.51842751842752,27.51842751842752,0.89086859688196 +sle,ABC / DN2 B,cSLE22,cSLE,332,10,10,203,1,3.0120481927710845,3.0120481927710845,0.49261083743842365 +sle,ABC / DN2 B,cSLE23,cSLE,488,130,130,324,3,26.639344262295083,26.639344262295083,0.9259259259259259 +sle,ABC / DN2 B,cHD4,cHD,473,18,18,308,1,3.8054968287526427,3.8054968287526427,0.3246753246753247 +sle,ABC / DN2 B,cHD5,cHD,498,23,23,315,4,4.618473895582329,4.618473895582329,1.2698412698412698 +sle,ABC / DN2 B,cSLE24,cSLE,1130,101,101,893,5,8.938053097345133,8.938053097345133,0.5599104143337066 +sle,ABC / DN2 B,cSLE25,cSLE,635,20,20,396,1,3.1496062992125986,3.1496062992125986,0.25252525252525254 +sle,ABC / DN2 B,cSLE26,cSLE,898,85,85,568,3,9.465478841870825,9.465478841870825,0.528169014084507 +sle,ABC / DN2 B,cSLE27,cSLE,894,126,126,321,1,14.093959731543624,14.093959731543624,0.3115264797507788 +sle,ABC / DN2 B,cSLE28,cSLE,161,7,7,100,0,4.3478260869565215,4.3478260869565215,0.0 +sle,ABC / DN2 B,cSLE29,cSLE,172,13,13,259,1,7.558139534883721,7.558139534883721,0.3861003861003861 +sle,ABC / DN2 B,cHD6,cHD,1028,35,35,482,1,3.404669260700389,3.404669260700389,0.2074688796680498 +sle,ABC / DN2 B,cHD7,cHD,860,38,38,433,4,4.4186046511627906,4.4186046511627906,0.9237875288683602 +sle,ABC / DN2 B,cSLE30,cSLE,658,23,23,326,2,3.4954407294832825,3.4954407294832825,0.6134969325153374 +sle,ABC / DN2 B,cSLE31,cSLE,251,25,25,195,1,9.9601593625498,9.9601593625498,0.5128205128205128 +sle,ABC / DN2 B,cSLE32,cSLE,829,19,19,266,2,2.2919179734620023,2.2919179734620023,0.7518796992481203 +sle,ABC / DN2 B,cSLE33,cSLE,1052,33,33,571,0,3.1368821292775664,3.1368821292775664,0.0 +sle,ABC / DN2 B,cHD10,cHD,1100,47,47,682,2,4.2727272727272725,4.2727272727272725,0.2932551319648094 +sle,ABC / DN2 B,cHD11,cHD,792,20,20,426,3,2.525252525252525,2.525252525252525,0.704225352112676 +sle,ABC / DN2 B,cHD8,cHD,798,25,25,402,4,3.1328320802005014,3.1328320802005014,0.9950248756218906 +sle,ABC / DN2 B,cHD9,cHD,913,26,26,466,0,2.8477546549835706,2.8477546549835706,0.0 +sle,ABC / DN2 B,aHD1,aHD,370,14,14,242,1,3.7837837837837838,3.7837837837837838,0.4132231404958678 +sle,ABC / DN2 B,aHD3,aHD,412,10,10,172,3,2.4271844660194173,2.4271844660194173,1.744186046511628 +sle,ABC / DN2 B,aSLE1,aSLE,82,11,11,80,0,13.414634146341463,13.414634146341463,0.0 +sle,ABC / DN2 B,aSLE2,aSLE,86,11,11,93,0,12.790697674418604,12.790697674418604,0.0 +sle,ABC / DN2 B,aSLE3,aSLE,336,18,18,199,1,5.357142857142857,5.357142857142857,0.5025125628140703 +sle,ABC / DN2 B,aSLE4,aSLE,130,12,12,164,0,9.23076923076923,9.23076923076923,0.0 +sle,ABC / DN2 B,aHD4,aHD,633,19,19,431,3,3.0015797788309637,3.0015797788309637,0.6960556844547564 +sle,ABC / DN2 B,aHD5,aHD,531,21,21,216,1,3.9548022598870056,3.9548022598870056,0.46296296296296297 +sle,ABC / DN2 B,aHD6,aHD,496,21,21,160,0,4.233870967741935,4.233870967741935,0.0 +sle,ABC / DN2 B,aSLE5,aSLE,146,2,2,185,1,1.36986301369863,1.36986301369863,0.5405405405405406 +sle,ABC / DN2 B,aSLE6,aSLE,24,2,2,103,1,8.333333333333334,8.333333333333334,0.970873786407767 +sle,ABC / DN2 B,aSLE7,aSLE,132,9,9,87,0,6.818181818181818,6.818181818181818,0.0 +sle,GZMK+ CD8 T,cSLE1,cSLE,299,14,14,276,38,4.682274247491639,4.682274247491639,13.768115942028986 +sle,GZMK+ CD8 T,cSLE2,cSLE,1026,49,49,371,51,4.775828460038986,4.775828460038986,13.746630727762803 +sle,GZMK+ CD8 T,cSLE3,cSLE,741,134,134,419,64,18.083670715249664,18.083670715249664,15.274463007159904 +sle,GZMK+ CD8 T,cSLE4,cSLE,827,89,89,396,86,10.761789600967353,10.761789600967353,21.717171717171716 +sle,GZMK+ CD8 T,cSLE5,cSLE,609,102,102,299,69,16.748768472906406,16.748768472906406,23.076923076923077 +sle,GZMK+ CD8 T,cSLE6,cSLE,905,88,88,286,98,9.723756906077348,9.723756906077348,34.26573426573427 +sle,GZMK+ CD8 T,cSLE7,cSLE,628,47,47,336,100,7.484076433121019,7.484076433121019,29.761904761904763 +sle,GZMK+ CD8 T,cSLE8,cSLE,1750,441,441,522,184,25.2,25.2,35.24904214559387 +sle,GZMK+ CD8 T,cSLE10,cSLE,2066,234,234,254,45,11.326234269119071,11.326234269119071,17.716535433070867 +sle,GZMK+ CD8 T,cSLE11,cSLE,890,86,86,420,99,9.662921348314606,9.662921348314606,23.571428571428573 +sle,GZMK+ CD8 T,cSLE9,cSLE,3413,200,200,336,75,5.859947260474656,5.859947260474656,22.321428571428573 +sle,GZMK+ CD8 T,cHD1,cHD,3408,126,126,330,133,3.6971830985915495,3.6971830985915495,40.303030303030305 +sle,GZMK+ CD8 T,cSLE12,cSLE,676,37,37,201,78,5.4733727810650885,5.4733727810650885,38.80597014925373 +sle,GZMK+ CD8 T,cSLE13,cSLE,1035,119,119,333,108,11.497584541062801,11.497584541062801,32.432432432432435 +sle,GZMK+ CD8 T,cSLE14,cSLE,780,151,151,485,127,19.358974358974358,19.358974358974358,26.185567010309278 +sle,GZMK+ CD8 T,cSLE15,cSLE,1924,79,79,335,82,4.106029106029106,4.106029106029106,24.47761194029851 +sle,GZMK+ CD8 T,cSLE16,cSLE,1334,55,55,498,44,4.122938530734633,4.122938530734633,8.835341365461847 +sle,GZMK+ CD8 T,cSLE17,cSLE,1511,28,28,418,51,1.8530774321641297,1.8530774321641297,12.200956937799043 +sle,GZMK+ CD8 T,cHD2,cHD,2166,111,111,353,80,5.124653739612189,5.124653739612189,22.662889518413596 +sle,GZMK+ CD8 T,cHD3,cHD,1408,103,103,365,88,7.315340909090909,7.315340909090909,24.10958904109589 +sle,GZMK+ CD8 T,cSLE18,cSLE,254,57,57,611,112,22.440944881889763,22.440944881889763,18.330605564648117 +sle,GZMK+ CD8 T,cSLE19,cSLE,1483,515,515,622,148,34.72690492245449,34.72690492245449,23.794212218649516 +sle,GZMK+ CD8 T,cSLE20,cSLE,895,128,128,438,156,14.30167597765363,14.30167597765363,35.61643835616438 +sle,GZMK+ CD8 T,cSLE21,cSLE,513,50,50,584,230,9.746588693957115,9.746588693957115,39.38356164383562 +sle,GZMK+ CD8 T,cSLE22,cSLE,626,38,38,322,56,6.0702875399361025,6.0702875399361025,17.391304347826086 +sle,GZMK+ CD8 T,cSLE23,cSLE,869,215,215,527,197,24.74108170310702,24.74108170310702,37.381404174573056 +sle,GZMK+ CD8 T,cHD4,cHD,837,73,73,512,116,8.72162485065711,8.72162485065711,22.65625 +sle,GZMK+ CD8 T,cHD5,cHD,1125,105,105,405,174,9.333333333333334,9.333333333333334,42.96296296296296 +sle,GZMK+ CD8 T,cSLE24,cSLE,1319,255,255,525,141,19.332827899924187,19.332827899924187,26.857142857142858 +sle,GZMK+ CD8 T,cSLE25,cSLE,716,69,69,291,78,9.636871508379889,9.636871508379889,26.804123711340207 +sle,GZMK+ CD8 T,cSLE26,cSLE,1194,91,91,374,59,7.6214405360134005,7.6214405360134005,15.775401069518717 +sle,GZMK+ CD8 T,cSLE27,cSLE,1025,190,190,571,111,18.536585365853657,18.536585365853657,19.439579684763572 +sle,GZMK+ CD8 T,cSLE28,cSLE,703,200,200,275,108,28.44950213371266,28.44950213371266,39.27272727272727 +sle,GZMK+ CD8 T,cSLE29,cSLE,2514,670,670,538,216,26.650755767700876,26.650755767700876,40.14869888475837 +sle,GZMK+ CD8 T,cHD6,cHD,1866,134,134,433,61,7.181136120042872,7.181136120042872,14.087759815242494 +sle,GZMK+ CD8 T,cHD7,cHD,1913,49,49,380,66,2.561421850496602,2.561421850496602,17.36842105263158 +sle,GZMK+ CD8 T,cSLE30,cSLE,1373,90,90,375,79,6.5549890750182085,6.5549890750182085,21.066666666666666 +sle,GZMK+ CD8 T,cSLE31,cSLE,947,40,40,458,72,4.223864836325237,4.223864836325237,15.720524017467248 +sle,GZMK+ CD8 T,cSLE32,cSLE,1660,258,258,455,186,15.542168674698795,15.542168674698795,40.879120879120876 +sle,GZMK+ CD8 T,cSLE33,cSLE,2606,544,544,367,100,20.874904067536455,20.874904067536455,27.247956403269754 +sle,GZMK+ CD8 T,cHD10,cHD,1305,59,59,352,62,4.521072796934866,4.521072796934866,17.613636363636363 +sle,GZMK+ CD8 T,cHD11,cHD,1139,71,71,317,49,6.2335381913959615,6.2335381913959615,15.457413249211356 +sle,GZMK+ CD8 T,cHD8,cHD,1670,73,73,350,122,4.37125748502994,4.37125748502994,34.857142857142854 +sle,GZMK+ CD8 T,cHD9,cHD,942,50,50,314,70,5.307855626326964,5.307855626326964,22.29299363057325 +sle,GZMK+ CD8 T,aHD1,aHD,648,205,205,320,119,31.635802469135804,31.635802469135804,37.1875 +sle,GZMK+ CD8 T,aHD3,aHD,797,184,184,301,141,23.086574654956085,23.086574654956085,46.84385382059801 +sle,GZMK+ CD8 T,aSLE1,aSLE,1730,574,574,651,224,33.179190751445084,33.179190751445084,34.40860215053763 +sle,GZMK+ CD8 T,aSLE2,aSLE,748,345,345,424,148,46.12299465240642,46.12299465240642,34.905660377358494 +sle,GZMK+ CD8 T,aSLE3,aSLE,899,133,133,328,56,14.794215795328142,14.794215795328142,17.073170731707318 +sle,GZMK+ CD8 T,aSLE4,aSLE,952,149,149,323,147,15.65126050420168,15.65126050420168,45.5108359133127 +sle,GZMK+ CD8 T,aHD4,aHD,1030,416,416,470,190,40.38834951456311,40.38834951456311,40.42553191489362 +sle,GZMK+ CD8 T,aHD5,aHD,1080,187,187,244,73,17.314814814814813,17.314814814814813,29.918032786885245 +sle,GZMK+ CD8 T,aHD6,aHD,1484,215,215,412,86,14.487870619946092,14.487870619946092,20.87378640776699 +sle,GZMK+ CD8 T,aSLE5,aSLE,1969,122,122,564,201,6.196038598273235,6.196038598273235,35.638297872340424 +sle,GZMK+ CD8 T,aSLE6,aSLE,370,94,94,421,64,25.405405405405407,25.405405405405407,15.20190023752969 +sle,GZMK+ CD8 T,aSLE7,aSLE,457,142,142,258,126,31.072210065645514,31.072210065645514,48.83720930232558 +sle,Cytotoxic CD4 T,cSLE1,cSLE,682,0,0,481,0,0.0,0.0,0.0 +sle,Cytotoxic CD4 T,cSLE2,cSLE,921,2,2,936,1,0.21715526601520088,0.21715526601520088,0.10683760683760683 +sle,Cytotoxic CD4 T,cSLE3,cSLE,618,6,6,596,4,0.970873786407767,0.970873786407767,0.6711409395973155 +sle,Cytotoxic CD4 T,cSLE4,cSLE,1357,3,3,933,4,0.2210759027266028,0.2210759027266028,0.4287245444801715 +sle,Cytotoxic CD4 T,cSLE5,cSLE,1030,2,2,1212,2,0.1941747572815534,0.1941747572815534,0.16501650165016502 +sle,Cytotoxic CD4 T,cSLE6,cSLE,889,1,1,1095,5,0.1124859392575928,0.1124859392575928,0.45662100456621 +sle,Cytotoxic CD4 T,cSLE7,cSLE,1136,4,4,1090,3,0.352112676056338,0.352112676056338,0.27522935779816515 +sle,Cytotoxic CD4 T,cSLE8,cSLE,1703,18,18,1580,9,1.0569583088667058,1.0569583088667058,0.569620253164557 +sle,Cytotoxic CD4 T,cSLE10,cSLE,4022,2,2,1437,6,0.04972650422675286,0.04972650422675286,0.4175365344467641 +sle,Cytotoxic CD4 T,cSLE11,cSLE,930,11,11,703,4,1.1827956989247312,1.1827956989247312,0.5689900426742532 +sle,Cytotoxic CD4 T,cSLE9,cSLE,4480,14,14,1650,5,0.3125,0.3125,0.30303030303030304 +sle,Cytotoxic CD4 T,cHD1,cHD,2795,46,46,1085,10,1.6457960644007155,1.6457960644007155,0.9216589861751152 +sle,Cytotoxic CD4 T,cSLE12,cSLE,1399,8,8,1883,2,0.5718370264474625,0.5718370264474625,0.10621348911311737 +sle,Cytotoxic CD4 T,cSLE13,cSLE,1337,29,29,1228,5,2.169035153328347,2.169035153328347,0.40716612377850164 +sle,Cytotoxic CD4 T,cSLE14,cSLE,680,274,274,483,8,40.294117647058826,40.294117647058826,1.6563146997929608 +sle,Cytotoxic CD4 T,cSLE15,cSLE,2887,63,63,1964,7,2.182196051264288,2.182196051264288,0.3564154786150713 +sle,Cytotoxic CD4 T,cSLE16,cSLE,2680,29,29,1905,8,1.0820895522388059,1.0820895522388059,0.4199475065616798 +sle,Cytotoxic CD4 T,cSLE17,cSLE,1460,17,17,1298,5,1.1643835616438356,1.1643835616438356,0.3852080123266564 +sle,Cytotoxic CD4 T,cHD2,cHD,3295,49,49,1707,2,1.487101669195751,1.487101669195751,0.11716461628588166 +sle,Cytotoxic CD4 T,cHD3,cHD,2998,118,118,1587,7,3.9359573048699135,3.9359573048699135,0.4410838059231254 +sle,Cytotoxic CD4 T,cSLE18,cSLE,300,18,18,497,3,6.0,6.0,0.6036217303822937 +sle,Cytotoxic CD4 T,cSLE19,cSLE,2224,54,54,1143,8,2.4280575539568345,2.4280575539568345,0.6999125109361329 +sle,Cytotoxic CD4 T,cSLE20,cSLE,2237,15,15,1508,6,0.6705409029950827,0.6705409029950827,0.3978779840848806 +sle,Cytotoxic CD4 T,cSLE21,cSLE,633,30,30,898,19,4.739336492890995,4.739336492890995,2.115812917594655 +sle,Cytotoxic CD4 T,cSLE22,cSLE,2151,1,1,1845,4,0.046490004649000466,0.046490004649000466,0.21680216802168023 +sle,Cytotoxic CD4 T,cSLE23,cSLE,797,15,15,1053,20,1.8820577164366374,1.8820577164366374,1.899335232668566 +sle,Cytotoxic CD4 T,cHD4,cHD,2312,56,56,1517,5,2.422145328719723,2.422145328719723,0.3295978905735003 +sle,Cytotoxic CD4 T,cHD5,cHD,1141,26,26,1126,14,2.2787028921998247,2.2787028921998247,1.2433392539964476 +sle,Cytotoxic CD4 T,cSLE24,cSLE,1123,45,45,837,11,4.007123775601069,4.007123775601069,1.3142174432497014 +sle,Cytotoxic CD4 T,cSLE25,cSLE,939,3,3,948,5,0.3194888178913738,0.3194888178913738,0.5274261603375527 +sle,Cytotoxic CD4 T,cSLE26,cSLE,1488,10,10,1122,3,0.6720430107526881,0.6720430107526881,0.26737967914438504 +sle,Cytotoxic CD4 T,cSLE27,cSLE,1332,68,68,903,6,5.105105105105105,5.105105105105105,0.6644518272425249 +sle,Cytotoxic CD4 T,cSLE28,cSLE,592,3,3,953,4,0.5067567567567568,0.5067567567567568,0.4197271773347324 +sle,Cytotoxic CD4 T,cSLE29,cSLE,1250,17,17,1486,18,1.36,1.36,1.2113055181695829 +sle,Cytotoxic CD4 T,cHD6,cHD,3306,7,7,1821,8,0.21173623714458562,0.21173623714458562,0.43931905546403077 +sle,Cytotoxic CD4 T,cHD7,cHD,2260,22,22,1826,9,0.9734513274336283,0.9734513274336283,0.4928806133625411 +sle,Cytotoxic CD4 T,cSLE30,cSLE,3014,12,12,1677,7,0.39814200398142,0.39814200398142,0.41741204531902204 +sle,Cytotoxic CD4 T,cSLE31,cSLE,1739,13,13,1671,7,0.7475560667050029,0.7475560667050029,0.4189108318372232 +sle,Cytotoxic CD4 T,cSLE32,cSLE,1323,78,78,1065,24,5.895691609977324,5.895691609977324,2.2535211267605635 +sle,Cytotoxic CD4 T,cSLE33,cSLE,1934,4,4,1474,7,0.20682523267838676,0.20682523267838676,0.47489823609226595 +sle,Cytotoxic CD4 T,cHD10,cHD,2520,1,1,1705,2,0.03968253968253968,0.03968253968253968,0.11730205278592376 +sle,Cytotoxic CD4 T,cHD11,cHD,2590,2,2,1622,5,0.07722007722007722,0.07722007722007722,0.3082614056720099 +sle,Cytotoxic CD4 T,cHD8,cHD,2144,24,24,1364,19,1.1194029850746268,1.1194029850746268,1.3929618768328447 +sle,Cytotoxic CD4 T,cHD9,cHD,2301,11,11,1516,3,0.4780530204259018,0.4780530204259018,0.19788918205804748 +sle,Cytotoxic CD4 T,aHD1,aHD,3071,40,40,1608,9,1.3025073266037122,1.3025073266037122,0.5597014925373134 +sle,Cytotoxic CD4 T,aHD3,aHD,1589,28,28,958,7,1.7621145374449338,1.7621145374449338,0.7306889352818372 +sle,Cytotoxic CD4 T,aSLE1,aSLE,516,73,73,590,18,14.147286821705427,14.147286821705427,3.0508474576271185 +sle,Cytotoxic CD4 T,aSLE2,aSLE,565,23,23,588,9,4.070796460176991,4.070796460176991,1.530612244897959 +sle,Cytotoxic CD4 T,aSLE3,aSLE,3136,2,2,1731,6,0.06377551020408163,0.06377551020408163,0.3466204506065858 +sle,Cytotoxic CD4 T,aSLE4,aSLE,1688,37,37,1181,11,2.191943127962085,2.191943127962085,0.9314140558848434 +sle,Cytotoxic CD4 T,aHD4,aHD,2612,13,13,1378,16,0.49770290964777947,0.49770290964777947,1.1611030478955007 +sle,Cytotoxic CD4 T,aHD5,aHD,2521,1,1,1227,4,0.039666798889329634,0.039666798889329634,0.32599837000814996 +sle,Cytotoxic CD4 T,aHD6,aHD,7462,14,14,2040,7,0.18761726078799248,0.18761726078799248,0.3431372549019608 +sle,Cytotoxic CD4 T,aSLE5,aSLE,1085,5,5,1015,16,0.4608294930875576,0.4608294930875576,1.5763546798029557 +sle,Cytotoxic CD4 T,aSLE6,aSLE,1780,0,0,1474,5,0.0,0.0,0.33921302578018997 +sle,Cytotoxic CD4 T,aSLE7,aSLE,1220,4,4,1336,10,0.32786885245901637,0.32786885245901637,0.7485029940119761 +sle,MS1 monocyte,cSLE1,cSLE,1396,170,162,711,15,12.177650429799426,11.60458452722063,2.109704641350211 +sle,MS1 monocyte,cSLE2,cSLE,1322,31,29,625,10,2.344931921331316,2.1936459909228443,1.6 +sle,MS1 monocyte,cSLE3,cSLE,1438,77,71,1064,21,5.354659248956884,4.937413073713491,1.9736842105263157 +sle,MS1 monocyte,cSLE4,cSLE,2201,84,76,864,20,3.8164470695138575,3.452975920036347,2.314814814814815 +sle,MS1 monocyte,cSLE5,cSLE,1240,59,55,704,11,4.758064516129032,4.435483870967742,1.5625 +sle,MS1 monocyte,cSLE6,cSLE,2389,92,86,960,17,3.8509836751778987,3.599832565927166,1.7708333333333333 +sle,MS1 monocyte,cSLE7,cSLE,887,161,150,445,5,18.1510710259301,16.910935738444195,1.1235955056179776 +sle,MS1 monocyte,cSLE8,cSLE,366,62,58,43,1,16.939890710382514,15.846994535519126,2.3255813953488373 +sle,MS1 monocyte,cSLE10,cSLE,4205,608,567,559,11,14.4589774078478,13.483947681331747,1.9677996422182469 +sle,MS1 monocyte,cSLE11,cSLE,4452,1719,1656,992,20,38.61185983827493,37.19676549865229,2.0161290322580645 +sle,MS1 monocyte,cSLE9,cSLE,2691,682,649,378,7,25.343738387216646,24.11742846525455,1.8518518518518519 +sle,MS1 monocyte,cHD1,cHD,2116,116,108,354,10,5.482041587901701,5.103969754253308,2.824858757062147 +sle,MS1 monocyte,cSLE12,cSLE,1614,484,455,455,5,29.987608426270135,28.1908302354399,1.098901098901099 +sle,MS1 monocyte,cSLE13,cSLE,1157,157,151,419,4,13.569576490924806,13.050993949870355,0.954653937947494 +sle,MS1 monocyte,cSLE14,cSLE,1850,212,202,674,9,11.45945945945946,10.91891891891892,1.3353115727002967 +sle,MS1 monocyte,cSLE15,cSLE,413,108,102,61,0,26.150121065375302,24.69733656174334,0.0 +sle,MS1 monocyte,cSLE16,cSLE,468,107,103,63,1,22.863247863247864,22.00854700854701,1.5873015873015872 +sle,MS1 monocyte,cSLE17,cSLE,1371,405,388,411,11,29.54048140043764,28.300510576221736,2.67639902676399 +sle,MS1 monocyte,cHD2,cHD,570,36,35,119,2,6.315789473684211,6.140350877192983,1.680672268907563 +sle,MS1 monocyte,cHD3,cHD,977,128,121,239,1,13.101330603889458,12.384851586489253,0.41841004184100417 +sle,MS1 monocyte,cSLE18,cSLE,888,170,160,576,19,19.144144144144143,18.01801801801802,3.298611111111111 +sle,MS1 monocyte,cSLE19,cSLE,1146,45,43,240,3,3.926701570680628,3.7521815008726005,1.25 +sle,MS1 monocyte,cSLE20,cSLE,595,47,47,191,2,7.899159663865547,7.899159663865547,1.0471204188481675 +sle,MS1 monocyte,cSLE21,cSLE,592,129,123,258,2,21.79054054054054,20.777027027027028,0.7751937984496124 +sle,MS1 monocyte,cSLE22,cSLE,883,169,161,277,5,19.13929784824462,18.23329558323896,1.8050541516245486 +sle,MS1 monocyte,cSLE23,cSLE,768,140,133,272,6,18.229166666666668,17.317708333333332,2.2058823529411766 +sle,MS1 monocyte,cHD4,cHD,780,14,13,167,1,1.794871794871795,1.6666666666666667,0.5988023952095808 +sle,MS1 monocyte,cHD5,cHD,885,116,113,271,4,13.107344632768362,12.768361581920903,1.4760147601476015 +sle,MS1 monocyte,cSLE24,cSLE,748,69,62,133,0,9.224598930481283,8.288770053475936,0.0 +sle,MS1 monocyte,cSLE25,cSLE,1726,197,181,868,10,11.413673232908458,10.48667439165701,1.152073732718894 +sle,MS1 monocyte,cSLE26,cSLE,1240,131,122,469,8,10.564516129032258,9.838709677419354,1.7057569296375266 +sle,MS1 monocyte,cSLE27,cSLE,1472,396,384,376,7,26.902173913043477,26.08695652173913,1.8617021276595744 +sle,MS1 monocyte,cSLE28,cSLE,2177,254,238,997,17,11.667432246210382,10.932475884244372,1.7051153460381143 +sle,MS1 monocyte,cSLE29,cSLE,528,44,39,73,1,8.333333333333334,7.386363636363637,1.36986301369863 +sle,MS1 monocyte,cHD6,cHD,391,31,30,32,2,7.928388746803069,7.672634271099744,6.25 +sle,MS1 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monocyte,cSLE10,cSLE,4205,406,382,559,17,9.655172413793103,9.084423305588585,3.041144901610018 +sle,ISG-high monocyte,cSLE11,cSLE,4452,4214,4180,992,800,94.65408805031447,93.89038634321653,80.64516129032258 +sle,ISG-high monocyte,cSLE9,cSLE,2691,529,498,378,9,19.65811965811966,18.50613154960981,2.380952380952381 +sle,ISG-high monocyte,cHD1,cHD,2116,31,26,354,3,1.4650283553875236,1.2287334593572778,0.847457627118644 +sle,ISG-high monocyte,cSLE12,cSLE,1614,11,10,455,5,0.6815365551425031,0.6195786864931846,1.098901098901099 +sle,ISG-high monocyte,cSLE13,cSLE,1157,4,4,419,4,0.34572169403630076,0.34572169403630076,0.954653937947494 +sle,ISG-high monocyte,cSLE14,cSLE,1850,1487,1459,674,384,80.37837837837837,78.86486486486487,56.97329376854599 +sle,ISG-high monocyte,cSLE15,cSLE,413,32,29,61,1,7.74818401937046,7.021791767554479,1.639344262295082 +sle,ISG-high monocyte,cSLE16,cSLE,468,295,290,63,10,63.034188034188034,61.965811965811966,15.873015873015873 +sle,ISG-high monocyte,cSLE17,cSLE,1371,889,862,411,110,64.84318016046682,62.87381473377097,26.7639902676399 +sle,ISG-high monocyte,cHD2,cHD,570,83,78,119,0,14.56140350877193,13.68421052631579,0.0 +sle,ISG-high monocyte,cHD3,cHD,977,31,26,239,2,3.172978505629478,2.661207778915046,0.8368200836820083 +sle,ISG-high monocyte,cSLE18,cSLE,888,858,850,576,478,96.62162162162163,95.72072072072072,82.98611111111111 +sle,ISG-high monocyte,cSLE19,cSLE,1146,866,842,240,131,75.5671902268761,73.47294938917976,54.583333333333336 +sle,ISG-high monocyte,cSLE20,cSLE,595,7,6,191,1,1.1764705882352942,1.0084033613445378,0.5235602094240838 +sle,ISG-high monocyte,cSLE21,cSLE,592,249,242,258,84,42.060810810810814,40.87837837837838,32.55813953488372 +sle,ISG-high monocyte,cSLE22,cSLE,883,47,47,277,1,5.322763306908267,5.322763306908267,0.36101083032490977 +sle,ISG-high monocyte,cSLE23,cSLE,768,492,475,272,107,64.0625,61.848958333333336,39.338235294117645 +sle,ISG-high monocyte,cHD4,cHD,780,23,22,167,2,2.948717948717949,2.8205128205128207,1.1976047904191616 +sle,ISG-high monocyte,cHD5,cHD,885,30,28,271,2,3.389830508474576,3.1638418079096047,0.7380073800738007 +sle,ISG-high monocyte,cSLE24,cSLE,748,456,440,133,48,60.962566844919785,58.8235294117647,36.090225563909776 +sle,ISG-high monocyte,cSLE25,cSLE,1726,384,362,868,67,22.247972190034762,20.97334878331402,7.71889400921659 +sle,ISG-high monocyte,cSLE26,cSLE,1240,876,854,469,166,70.64516129032258,68.87096774193549,35.39445628997868 +sle,ISG-high monocyte,cSLE27,cSLE,1472,1429,1420,376,304,97.0788043478261,96.46739130434783,80.85106382978724 +sle,ISG-high monocyte,cSLE28,cSLE,2177,930,888,997,222,42.71933853927423,40.79007808911346,22.26680040120361 +sle,ISG-high monocyte,cSLE29,cSLE,528,27,25,73,1,5.113636363636363,4.734848484848484,1.36986301369863 +sle,ISG-high monocyte,cHD6,cHD,391,10,10,32,0,2.557544757033248,2.557544757033248,0.0 +sle,ISG-high monocyte,cHD7,cHD,548,42,41,66,0,7.664233576642336,7.481751824817518,0.0 +sle,ISG-high monocyte,cSLE30,cSLE,877,3,3,188,0,0.34207525655644244,0.34207525655644244,0.0 +sle,ISG-high monocyte,cSLE31,cSLE,586,294,286,139,41,50.170648464163826,48.80546075085324,29.496402877697843 +sle,ISG-high monocyte,cSLE32,cSLE,1119,258,243,340,34,23.056300268096514,21.715817694369974,10.0 +sle,ISG-high monocyte,cSLE33,cSLE,746,69,66,122,1,9.249329758713136,8.847184986595174,0.819672131147541 +sle,ISG-high monocyte,cHD10,cHD,399,9,7,56,0,2.255639097744361,1.7543859649122806,0.0 +sle,ISG-high monocyte,cHD11,cHD,896,21,20,217,4,2.34375,2.232142857142857,1.8433179723502304 +sle,ISG-high monocyte,cHD8,cHD,523,4,3,135,2,0.7648183556405354,0.5736137667304015,1.4814814814814814 +sle,ISG-high monocyte,cHD9,cHD,1007,20,19,175,4,1.9860973187686197,1.8867924528301887,2.2857142857142856 +sle,ISG-high monocyte,aHD1,aHD,807,39,35,136,1,4.83271375464684,4.337050805452292,0.7352941176470589 +sle,ISG-high monocyte,aHD3,aHD,2440,19,19,765,6,0.7786885245901639,0.7786885245901639,0.7843137254901961 +sle,ISG-high monocyte,aSLE1,aSLE,904,762,750,250,136,84.29203539823008,82.96460176991151,54.4 +sle,ISG-high monocyte,aSLE2,aSLE,2206,1528,1487,950,543,69.26563916591115,67.40707162284679,57.1578947368421 +sle,ISG-high monocyte,aSLE3,aSLE,1852,109,99,357,3,5.885529157667387,5.345572354211663,0.8403361344537815 +sle,ISG-high monocyte,aSLE4,aSLE,1657,5,3,432,4,0.30175015087507545,0.18105009052504525,0.9259259259259259 +sle,ISG-high monocyte,aHD4,aHD,667,5,4,79,0,0.7496251874062968,0.5997001499250375,0.0 +sle,ISG-high monocyte,aHD5,aHD,2204,37,34,649,5,1.6787658802177858,1.5426497277676952,0.7704160246533128 +sle,ISG-high monocyte,aHD6,aHD,501,13,13,36,0,2.594810379241517,2.594810379241517,0.0 +sle,ISG-high monocyte,aSLE5,aSLE,776,332,321,282,36,42.78350515463917,41.365979381443296,12.76595744680851 +sle,ISG-high monocyte,aSLE6,aSLE,1168,403,383,632,56,34.50342465753425,32.79109589041096,8.860759493670885 +sle,ISG-high monocyte,aSLE7,aSLE,1076,8,8,487,0,0.7434944237918215,0.7434944237918215,0.0 +sle,Platelet-bound monocyte,cSLE1,cSLE,1396,9,8,711,3,0.6446991404011462,0.5730659025787965,0.4219409282700422 +sle,Platelet-bound monocyte,cSLE2,cSLE,1322,2,2,625,10,0.15128593040847202,0.15128593040847202,1.6 +sle,Platelet-bound monocyte,cSLE3,cSLE,1438,11,11,1064,18,0.7649513212795549,0.7649513212795549,1.6917293233082706 +sle,Platelet-bound monocyte,cSLE4,cSLE,2201,17,17,864,6,0.7723761926397092,0.7723761926397092,0.6944444444444444 +sle,Platelet-bound monocyte,cSLE5,cSLE,1240,20,20,704,8,1.6129032258064515,1.6129032258064515,1.1363636363636365 +sle,Platelet-bound monocyte,cSLE6,cSLE,2389,20,20,960,5,0.8371703641691084,0.8371703641691084,0.5208333333333334 +sle,Platelet-bound monocyte,cSLE7,cSLE,887,26,25,445,8,2.931228861330327,2.818489289740699,1.797752808988764 +sle,Platelet-bound monocyte,cSLE8,cSLE,366,4,4,43,0,1.092896174863388,1.092896174863388,0.0 +sle,Platelet-bound monocyte,cSLE10,cSLE,4205,191,186,559,5,4.542211652794292,4.423305588585018,0.8944543828264758 +sle,Platelet-bound monocyte,cSLE11,cSLE,4452,223,216,992,17,5.008984725965858,4.8517520215633425,1.7137096774193548 +sle,Platelet-bound monocyte,cSLE9,cSLE,2691,61,61,378,1,2.266815310293571,2.266815310293571,0.26455026455026454 +sle,Platelet-bound monocyte,cHD1,cHD,2116,103,101,354,3,4.8676748582230625,4.773156899810964,0.847457627118644 +sle,Platelet-bound monocyte,cSLE12,cSLE,1614,168,165,455,0,10.408921933085502,10.223048327137546,0.0 +sle,Platelet-bound monocyte,cSLE13,cSLE,1157,47,46,419,3,4.062229904926534,3.975799481417459,0.7159904534606205 +sle,Platelet-bound monocyte,cSLE14,cSLE,1850,94,92,674,15,5.081081081081081,4.972972972972973,2.2255192878338277 +sle,Platelet-bound monocyte,cSLE15,cSLE,413,16,15,61,0,3.87409200968523,3.6319612590799033,0.0 +sle,Platelet-bound monocyte,cSLE16,cSLE,468,23,23,63,0,4.914529914529915,4.914529914529915,0.0 +sle,Platelet-bound monocyte,cSLE17,cSLE,1371,94,91,411,7,6.856309263311451,6.637490882567469,1.70316301703163 +sle,Platelet-bound monocyte,cHD2,cHD,570,4,4,119,0,0.7017543859649122,0.7017543859649122,0.0 +sle,Platelet-bound monocyte,cHD3,cHD,977,92,90,239,2,9.416581371545547,9.211873080859775,0.8368200836820083 +sle,Platelet-bound monocyte,cSLE18,cSLE,888,5,5,576,7,0.5630630630630631,0.5630630630630631,1.2152777777777777 +sle,Platelet-bound monocyte,cSLE19,cSLE,1146,43,42,240,1,3.7521815008726005,3.6649214659685865,0.4166666666666667 +sle,Platelet-bound monocyte,cSLE20,cSLE,595,14,14,191,0,2.3529411764705883,2.3529411764705883,0.0 +sle,Platelet-bound monocyte,cSLE21,cSLE,592,20,19,258,0,3.3783783783783785,3.2094594594594597,0.0 +sle,Platelet-bound monocyte,cSLE22,cSLE,883,14,12,277,1,1.5855039637599093,1.3590033975084939,0.36101083032490977 +sle,Platelet-bound monocyte,cSLE23,cSLE,768,114,108,272,6,14.84375,14.0625,2.2058823529411766 +sle,Platelet-bound monocyte,cHD4,cHD,780,19,19,167,0,2.4358974358974357,2.4358974358974357,0.0 +sle,Platelet-bound monocyte,cHD5,cHD,885,27,27,271,1,3.0508474576271185,3.0508474576271185,0.36900369003690037 +sle,Platelet-bound monocyte,cSLE24,cSLE,748,19,18,133,2,2.5401069518716577,2.406417112299465,1.5037593984962405 +sle,Platelet-bound monocyte,cSLE25,cSLE,1726,4,4,868,9,0.23174971031286212,0.23174971031286212,1.0368663594470047 +sle,Platelet-bound monocyte,cSLE26,cSLE,1240,32,32,469,6,2.5806451612903225,2.5806451612903225,1.279317697228145 +sle,Platelet-bound monocyte,cSLE27,cSLE,1472,24,24,376,1,1.6304347826086956,1.6304347826086956,0.26595744680851063 +sle,Platelet-bound monocyte,cSLE28,cSLE,2177,29,28,997,9,1.33210840606339,1.2861736334405145,0.9027081243731193 +sle,Platelet-bound monocyte,cSLE29,cSLE,528,29,29,73,1,5.492424242424242,5.492424242424242,1.36986301369863 +sle,Platelet-bound monocyte,cHD6,cHD,391,10,10,32,0,2.557544757033248,2.557544757033248,0.0 +sle,Platelet-bound monocyte,cHD7,cHD,548,29,29,66,0,5.291970802919708,5.291970802919708,0.0 +sle,Platelet-bound monocyte,cSLE30,cSLE,877,23,23,188,0,2.622576966932725,2.622576966932725,0.0 +sle,Platelet-bound monocyte,cSLE31,cSLE,586,19,18,139,0,3.242320819112628,3.0716723549488054,0.0 +sle,Platelet-bound monocyte,cSLE32,cSLE,1119,13,13,340,1,1.161751563896336,1.161751563896336,0.29411764705882354 +sle,Platelet-bound monocyte,cSLE33,cSLE,746,9,9,122,0,1.2064343163538873,1.2064343163538873,0.0 +sle,Platelet-bound monocyte,cHD10,cHD,399,9,8,56,0,2.255639097744361,2.0050125313283207,0.0 +sle,Platelet-bound monocyte,cHD11,cHD,896,9,9,217,2,1.0044642857142858,1.0044642857142858,0.9216589861751152 +sle,Platelet-bound monocyte,cHD8,cHD,523,62,60,135,1,11.854684512428298,11.47227533460803,0.7407407407407407 +sle,Platelet-bound monocyte,cHD9,cHD,1007,23,21,175,1,2.284011916583913,2.0854021847070507,0.5714285714285714 +sle,Platelet-bound monocyte,aHD1,aHD,807,14,13,136,1,1.734820322180917,1.61090458488228,0.7352941176470589 +sle,Platelet-bound monocyte,aHD3,aHD,2440,51,49,765,9,2.0901639344262297,2.0081967213114753,1.1764705882352942 +sle,Platelet-bound monocyte,aSLE1,aSLE,904,70,69,250,3,7.743362831858407,7.632743362831858,1.2 +sle,Platelet-bound monocyte,aSLE2,aSLE,2206,126,124,950,10,5.7116953762466,5.621033544877607,1.0526315789473684 +sle,Platelet-bound monocyte,aSLE3,aSLE,1852,35,35,357,2,1.8898488120950323,1.8898488120950323,0.5602240896358543 +sle,Platelet-bound monocyte,aSLE4,aSLE,1657,92,89,432,5,5.552202776101388,5.371152685576343,1.1574074074074074 +sle,Platelet-bound monocyte,aHD4,aHD,667,11,11,79,0,1.6491754122938531,1.6491754122938531,0.0 +sle,Platelet-bound monocyte,aHD5,aHD,2204,19,19,649,4,0.8620689655172413,0.8620689655172413,0.6163328197226502 +sle,Platelet-bound monocyte,aHD6,aHD,501,3,3,36,0,0.5988023952095808,0.5988023952095808,0.0 +sle,Platelet-bound monocyte,aSLE5,aSLE,776,10,10,282,3,1.288659793814433,1.288659793814433,1.0638297872340425 +sle,Platelet-bound monocyte,aSLE6,aSLE,1168,14,14,632,5,1.1986301369863013,1.1986301369863013,0.7911392405063291 +sle,Platelet-bound monocyte,aSLE7,aSLE,1076,46,45,487,7,4.275092936802974,4.182156133828996,1.4373716632443532 +sle,Granulocyte-like (LDG),cSLE1,cSLE,4640,35,35,3000,1,0.7543103448275862,0.7543103448275862,0.03333333333333333 +sle,Granulocyte-like (LDG),cSLE2,cSLE,5192,9,9,3000,1,0.17334360554699538,0.17334360554699538,0.03333333333333333 +sle,Granulocyte-like (LDG),cSLE3,cSLE,3893,25,25,3000,0,0.6421782686873876,0.6421782686873876,0.0 +sle,Granulocyte-like (LDG),cSLE4,cSLE,6171,45,45,3000,0,0.7292173067574137,0.7292173067574137,0.0 +sle,Granulocyte-like (LDG),cSLE5,cSLE,4213,26,26,3000,0,0.6171374317588417,0.6171374317588417,0.0 +sle,Granulocyte-like (LDG),cSLE6,cSLE,5433,29,29,3000,0,0.5337750782256581,0.5337750782256581,0.0 +sle,Granulocyte-like (LDG),cSLE7,cSLE,3897,28,28,3000,0,0.718501411342058,0.718501411342058,0.0 +sle,Granulocyte-like (LDG),cSLE8,cSLE,6245,7,7,3000,0,0.11208967173738991,0.11208967173738991,0.0 +sle,Granulocyte-like (LDG),cSLE10,cSLE,13448,127,127,3000,0,0.9443783462224866,0.9443783462224866,0.0 +sle,Granulocyte-like (LDG),cSLE11,cSLE,10155,464,464,3000,1,4.569177744953225,4.569177744953225,0.03333333333333333 +sle,Granulocyte-like (LDG),cSLE9,cSLE,13561,91,91,3000,0,0.6710419585576285,0.6710419585576285,0.0 +sle,Granulocyte-like (LDG),cHD1,cHD,13437,70,70,3000,0,0.5209496167299248,0.5209496167299248,0.0 +sle,Granulocyte-like (LDG),cSLE12,cSLE,5400,53,53,3000,1,0.9814814814814815,0.9814814814814815,0.03333333333333333 +sle,Granulocyte-like (LDG),cSLE13,cSLE,5313,53,53,3000,0,0.9975531714662149,0.9975531714662149,0.0 +sle,Granulocyte-like (LDG),cSLE14,cSLE,4458,47,47,3000,0,1.054284432480933,1.054284432480933,0.0 +sle,Granulocyte-like (LDG),cSLE15,cSLE,6427,10,10,3000,0,0.1555935895441108,0.1555935895441108,0.0 +sle,Granulocyte-like (LDG),cSLE16,cSLE,5560,17,17,3000,0,0.3057553956834532,0.3057553956834532,0.0 +sle,Granulocyte-like (LDG),cSLE17,cSLE,6135,48,48,3000,0,0.78239608801956,0.78239608801956,0.0 +sle,Granulocyte-like (LDG),cHD2,cHD,8857,17,17,3000,0,0.19193857965451055,0.19193857965451055,0.0 +sle,Granulocyte-like (LDG),cHD3,cHD,8999,42,42,3000,0,0.4667185242804756,0.4667185242804756,0.0 +sle,Granulocyte-like (LDG),cSLE18,cSLE,3049,54,54,3000,1,1.7710724827812399,1.7710724827812399,0.03333333333333333 +sle,Granulocyte-like (LDG),cSLE19,cSLE,6703,12,12,3000,0,0.17902431746978964,0.17902431746978964,0.0 +sle,Granulocyte-like (LDG),cSLE20,cSLE,5454,17,17,3000,0,0.3116978364503117,0.3116978364503117,0.0 +sle,Granulocyte-like (LDG),cSLE21,cSLE,2784,7,7,3000,1,0.2514367816091954,0.2514367816091954,0.03333333333333333 +sle,Granulocyte-like (LDG),cSLE22,cSLE,5003,17,17,3000,0,0.33979612232660406,0.33979612232660406,0.0 +sle,Granulocyte-like (LDG),cSLE23,cSLE,3646,22,22,3000,0,0.603400987383434,0.603400987383434,0.0 +sle,Granulocyte-like (LDG),cHD4,cHD,6027,14,14,3000,0,0.23228803716608595,0.23228803716608595,0.0 +sle,Granulocyte-like (LDG),cHD5,cHD,5505,9,9,3000,0,0.16348773841961853,0.16348773841961853,0.0 +sle,Granulocyte-like (LDG),cSLE24,cSLE,5577,26,26,3000,0,0.4662004662004662,0.4662004662004662,0.0 +sle,Granulocyte-like (LDG),cSLE25,cSLE,4911,36,36,3000,0,0.7330482590103848,0.7330482590103848,0.0 +sle,Granulocyte-like (LDG),cSLE26,cSLE,5670,35,35,3000,0,0.6172839506172839,0.6172839506172839,0.0 +sle,Granulocyte-like (LDG),cSLE27,cSLE,6017,52,52,3000,0,0.864218048861559,0.864218048861559,0.0 +sle,Granulocyte-like (LDG),cSLE28,cSLE,4748,46,46,3000,0,0.9688289806234204,0.9688289806234204,0.0 +sle,Granulocyte-like (LDG),cSLE29,cSLE,5754,13,13,3000,0,0.2259297879735836,0.2259297879735836,0.0 +sle,Granulocyte-like (LDG),cHD6,cHD,7937,10,10,3000,0,0.12599218848431398,0.12599218848431398,0.0 +sle,Granulocyte-like (LDG),cHD7,cHD,7176,5,5,3000,0,0.06967670011148272,0.06967670011148272,0.0 +sle,Granulocyte-like (LDG),cSLE30,cSLE,7645,14,14,3000,0,0.18312622629169392,0.18312622629169392,0.0 +sle,Granulocyte-like (LDG),cSLE31,cSLE,4448,12,12,3000,0,0.2697841726618705,0.2697841726618705,0.0 +sle,Granulocyte-like (LDG),cSLE32,cSLE,6643,44,44,3000,0,0.6623513472828542,0.6623513472828542,0.0 +sle,Granulocyte-like (LDG),cSLE33,cSLE,7645,10,10,3000,0,0.13080444735120994,0.13080444735120994,0.0 +sle,Granulocyte-like (LDG),cHD10,cHD,6268,9,9,3000,0,0.14358647096362476,0.14358647096362476,0.0 +sle,Granulocyte-like (LDG),cHD11,cHD,6659,16,16,3000,1,0.24027631776543024,0.24027631776543024,0.03333333333333333 +sle,Granulocyte-like (LDG),cHD8,cHD,7384,17,17,3000,0,0.23022751895991334,0.23022751895991334,0.0 +sle,Granulocyte-like (LDG),cHD9,cHD,7316,15,15,3000,0,0.2050300710770913,0.2050300710770913,0.0 +sle,Granulocyte-like (LDG),aHD1,aHD,7198,7,7,3000,0,0.0972492358988608,0.0972492358988608,0.0 +sle,Granulocyte-like (LDG),aHD3,aHD,7191,61,61,3000,0,0.8482825754415241,0.8482825754415241,0.0 +sle,Granulocyte-like (LDG),aSLE1,aSLE,4321,25,25,3000,0,0.578569775514927,0.578569775514927,0.0 +sle,Granulocyte-like (LDG),aSLE2,aSLE,4521,50,50,3000,0,1.1059500110595002,1.1059500110595002,0.0 +sle,Granulocyte-like (LDG),aSLE3,aSLE,7462,37,37,3000,0,0.49584561779683733,0.49584561779683733,0.0 +sle,Granulocyte-like (LDG),aSLE4,aSLE,6209,22,22,3000,0,0.35432436785311644,0.35432436785311644,0.0 +sle,Granulocyte-like (LDG),aHD4,aHD,6643,11,11,3000,0,0.16558783682071354,0.16558783682071354,0.0 +sle,Granulocyte-like (LDG),aHD5,aHD,8141,47,47,3000,0,0.5773246529910331,0.5773246529910331,0.0 +sle,Granulocyte-like (LDG),aHD6,aHD,12267,10,10,3000,0,0.08151952392598028,0.08151952392598028,0.0 +sle,Granulocyte-like (LDG),aSLE5,aSLE,4588,22,22,3000,1,0.47951176983435045,0.47951176983435045,0.03333333333333333 +sle,Granulocyte-like (LDG),aSLE6,aSLE,3730,32,32,3000,0,0.8579088471849866,0.8579088471849866,0.0 +sle,Granulocyte-like (LDG),aSLE7,aSLE,4561,28,28,3000,1,0.6139004604253453,0.6139004604253453,0.03333333333333333 diff --git a/paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/v1_provisional_markers/screen_v1_stdout.txt b/paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/v1_provisional_markers/screen_v1_stdout.txt new file mode 100644 index 0000000000000000000000000000000000000000..40ed19fa59d721dc3082fb2f75c0d884ab87834f --- /dev/null +++ b/paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/v1_provisional_markers/screen_v1_stdout.txt @@ -0,0 +1,98 @@ + dataset state k thin gen obs_thinned obs_native_n gen_pct obs_pct gen_over_obs spearman + dress C1Q-high monocyte (reference) 2 0.607 110 / 3,793 529 / 4,485 586 2.900 11.795 0.246 0.964 + dress Plasmablast (label) 1.000 76 / 35,000 187 / 33,712 187 0.217 0.555 0.391 0.571 + dress Plasmablast (markers) 3 0.887 68 / 1,938 203 / 2,245 216 3.509 9.042 0.388 0.321 + dress Progenitor (label) 1.000 20 / 35,000 35 / 33,712 35 0.057 0.104 0.550 0.432 + dress Proliferating T (label) 1.000 1,001 / 27,578 4,226 / 24,482 4226 3.630 17.262 0.210 0.643 + dress ABC / DN2 B 2 0.887 39 / 1,938 193 / 2,245 221 2.012 8.597 0.234 -0.214 + dress GZMK+ CD8 T 1 1.000 1,138 / 6,901 838 / 6,038 838 16.490 13.879 1.188 0.964 + dress Cytotoxic CD4 T 3 1.000 41 / 17,909 9 / 12,541 9 0.229 0.072 3.190 0.595 + dress MS1 monocyte 3 0.607 184 / 3,793 417 / 4,485 797 4.851 9.298 0.522 0.679 + dress ISG-high monocyte 4 0.607 12 / 3,793 131 / 4,485 242 0.316 2.921 0.108 0.517 + dress Platelet-bound monocyte 2 0.607 6 / 3,793 26 / 4,485 41 0.158 0.580 0.273 0.576 + dress Granulocyte-like (LDG) 2 0.967 0 / 35,000 404 / 33,712 421 0.000 1.198 0.000 NaN +kawasaki C1Q-high monocyte (reference) 2 1.000 43 / 7,927 603 / 11,050 603 0.542 5.457 0.099 0.173 +kawasaki Plasmablast (label) 1.000 206 / 75,000 1,837 / 103,362 1837 0.275 1.777 0.155 0.558 +kawasaki Plasmablast (markers) 3 1.000 237 / 20,998 1,654 / 21,517 1654 1.129 7.687 0.147 0.604 +kawasaki Progenitor (label) 1.000 71 / 75,000 175 / 103,362 175 0.095 0.169 0.559 0.716 +kawasaki Proliferating T (label) 1.000 330 / 42,408 1,146 / 57,032 1146 0.778 2.009 0.387 0.193 +kawasaki ABC / DN2 B 2 1.000 397 / 20,998 907 / 21,517 907 1.891 4.215 0.449 -0.264 +kawasaki GZMK+ CD8 T 1 1.000 1,884 / 11,370 746 / 15,371 746 16.570 4.853 3.414 0.343 +kawasaki Cytotoxic CD4 T 3 1.000 94 / 26,586 163 / 28,856 163 0.354 0.565 0.626 0.461 +kawasaki MS1 monocyte 3 1.000 1,442 / 7,927 3,263 / 11,050 3263 18.191 29.529 0.616 0.679 +kawasaki ISG-high monocyte 4 1.000 280 / 7,927 2,256 / 11,050 2256 3.532 20.416 0.173 0.178 +kawasaki Platelet-bound monocyte 2 1.000 27 / 7,927 649 / 11,050 649 0.341 5.873 0.058 0.367 +kawasaki Granulocyte-like (LDG) 2 1.000 12 / 75,000 2,236 / 103,362 2236 0.016 2.163 0.007 0.794 + sle C1Q-high monocyte (reference) 2 0.957 109 / 21,833 1,798 / 70,901 1823 0.499 2.536 0.197 0.404 + sle Plasmablast (label) 1.000 85 / 168,000 1,526 / 358,235 1526 0.051 0.426 0.119 0.190 + sle Plasmablast (markers) 3 1.000 72 / 19,311 1,298 / 35,488 1298 0.373 3.658 0.102 0.148 + sle Progenitor (label) 1.000 35 / 168,000 352 / 358,235 352 0.021 0.098 0.212 0.335 + sle Proliferating T (label) 1.000 561 / 106,521 1,953 / 216,491 1953 0.527 0.902 0.584 0.670 + sle ABC / DN2 B 2 1.000 103 / 19,311 2,213 / 35,488 2213 0.533 6.236 0.086 -0.272 + sle GZMK+ CD8 T 1 1.000 6,044 / 22,345 9,083 / 69,054 9083 27.049 13.153 2.056 0.450 + sle Cytotoxic CD4 T 3 1.000 432 / 71,556 1,471 / 106,194 1471 0.604 1.385 0.436 0.639 + sle MS1 monocyte 3 0.957 381 / 21,833 8,977 / 70,901 9480 1.745 12.661 0.138 0.044 + sle ISG-high monocyte 4 0.957 4,943 / 21,833 20,677 / 70,901 21269 22.640 29.163 0.776 0.837 + sle Platelet-bound monocyte 2 0.957 209 / 21,833 2,259 / 70,901 2315 0.957 3.186 0.300 0.150 + sle Granulocyte-like (LDG) 2 1.000 9 / 168,000 2,107 / 358,235 2107 0.005 0.588 0.009 0.188 + dataset state contrast obs_a_counts obs_b_counts gen_a_counts gen_b_counts obs_diff gen_diff same_direction + dress C1Q-high monocyte (reference) DRESS|none - healthy|none 53 / 1388 32 / 1949 15 / 705 11 / 1148 2.18 1.17 True + dress Plasmablast (label) DRESS|none - healthy|none 43 / 7592 2 / 8588 12 / 5000 2 / 5000 0.54 0.20 True + dress Plasmablast (markers) DRESS|none - healthy|none 48 / 375 12 / 663 15 / 326 2 / 327 10.99 3.99 True + dress Progenitor (label) DRESS|none - healthy|none 6 / 7592 11 / 8588 7 / 5000 3 / 5000 -0.05 0.08 False + dress Proliferating T (label) DRESS|none - healthy|none 2361 / 5394 59 / 4831 70 / 3696 5 / 2875 42.55 1.72 True + dress ABC / DN2 B DRESS|none - healthy|none 21 / 375 45 / 663 12 / 326 5 / 327 -1.19 2.15 False + dress GZMK+ CD8 T DRESS|none - healthy|none 17 / 696 764 / 2085 233 / 894 551 / 1496 -34.20 -10.77 True + dress Cytotoxic CD4 T DRESS|none - healthy|none 1 / 2108 2 / 2003 12 / 2477 7 / 907 -0.05 -0.29 True + dress MS1 monocyte DRESS|none - healthy|none 166 / 1388 129 / 1949 79 / 705 47 / 1148 5.34 7.11 True + dress ISG-high monocyte DRESS|none - healthy|none 26 / 1388 49 / 1949 6 / 705 3 / 1148 -0.64 0.59 False + dress Platelet-bound monocyte DRESS|none - healthy|none 12 / 1388 13 / 1949 2 / 705 2 / 1148 0.20 0.11 True + dress Granulocyte-like (LDG) DRESS|none - healthy|none 222 / 7592 152 / 8588 0 / 5000 0 / 5000 1.15 0.00 False +kawasaki C1Q-high monocyte (reference) KD_before - HC 344 / 5923 45 / 1123 21 / 4450 1 / 798 2.92 0.35 True +kawasaki C1Q-high monocyte (reference) KD_before - KD_after 344 / 5923 214 / 4004 21 / 4450 21 / 2679 3.05 -0.36 False +kawasaki Plasmablast (label) KD_before - HC 498 / 36717 116 / 16203 76 / 30000 24 / 15000 0.73 0.09 True +kawasaki Plasmablast (label) KD_before - KD_after 498 / 36717 1223 / 50442 76 / 30000 106 / 30000 -1.00 -0.10 True +kawasaki Plasmablast (markers) KD_before - HC 576 / 11634 156 / 3316 93 / 11002 28 / 4266 0.87 0.35 True +kawasaki Plasmablast (markers) KD_before - KD_after 576 / 11634 922 / 6567 93 / 11002 116 / 5730 -8.73 -1.06 True +kawasaki Progenitor (label) KD_before - HC 58 / 36717 7 / 16203 46 / 30000 0 / 15000 0.12 0.15 True +kawasaki Progenitor (label) KD_before - KD_after 58 / 36717 110 / 50442 46 / 30000 25 / 30000 -0.03 0.07 False +kawasaki Proliferating T (label) KD_before - HC 158 / 16366 164 / 10135 125 / 13373 50 / 9110 -0.59 0.37 False +kawasaki Proliferating T (label) KD_before - KD_after 158 / 16366 824 / 30531 125 / 13373 155 / 19925 -1.80 0.13 False +kawasaki ABC / DN2 B KD_before - HC 457 / 11634 167 / 3316 213 / 11002 68 / 4266 -0.59 0.30 False +kawasaki ABC / DN2 B KD_before - KD_after 457 / 11634 283 / 6567 213 / 11002 116 / 5730 -0.27 -0.22 True +kawasaki GZMK+ CD8 T KD_before - HC 152 / 4930 238 / 3652 488 / 3518 583 / 3062 -3.68 -4.41 True +kawasaki GZMK+ CD8 T KD_before - KD_after 152 / 4930 356 / 6789 488 / 3518 813 / 4790 -3.05 -2.63 True +kawasaki Cytotoxic CD4 T KD_before - HC 5 / 8948 18 / 4852 27 / 8516 17 / 4764 -0.30 -0.02 True +kawasaki Cytotoxic CD4 T KD_before - KD_after 5 / 8948 140 / 15056 27 / 8516 50 / 13306 -0.72 -0.08 True +kawasaki MS1 monocyte KD_before - HC 2642 / 5923 50 / 1123 1087 / 4450 39 / 798 30.74 11.81 True +kawasaki MS1 monocyte KD_before - KD_after 2642 / 5923 571 / 4004 1087 / 4450 316 / 2679 20.63 5.64 True +kawasaki ISG-high monocyte KD_before - HC 395 / 5923 254 / 1123 31 / 4450 3 / 798 -15.02 0.11 False +kawasaki ISG-high monocyte KD_before - KD_after 395 / 5923 1607 / 4004 31 / 4450 246 / 2679 -12.20 -4.79 True +kawasaki Platelet-bound monocyte KD_before - HC 321 / 5923 65 / 1123 14 / 4450 2 / 798 -2.81 0.07 False +kawasaki Platelet-bound monocyte KD_before - KD_after 321 / 5923 263 / 4004 14 / 4450 11 / 2679 -1.82 -0.13 True +kawasaki Granulocyte-like (LDG) KD_before - HC 1083 / 36717 45 / 16203 8 / 30000 0 / 15000 3.36 0.03 True +kawasaki Granulocyte-like (LDG) KD_before - KD_after 1083 / 36717 1108 / 50442 8 / 30000 4 / 30000 1.28 0.01 True + sle C1Q-high monocyte (reference) aSLE - aHD 348 / 9639 108 / 6619 21 / 3390 7 / 1665 1.62 -0.10 False + sle C1Q-high monocyte (reference) cSLE - cHD 1225 / 45551 117 / 9092 77 / 14947 4 / 1831 0.58 0.11 True + sle Plasmablast (label) aSLE - aHD 143 / 35392 77 / 41440 3 / 21000 6 / 15000 0.18 -0.03 False + sle Plasmablast (label) cSLE - cHD 1084 / 195838 222 / 85565 69 / 99000 7 / 33000 0.39 0.05 True + sle Plasmablast (markers) aSLE - aHD 134 / 936 68 / 2442 3 / 911 5 / 1221 13.65 -0.16 False + sle Plasmablast (markers) cSLE - cHD 907 / 21628 189 / 10482 57 / 12436 7 / 4743 2.95 0.27 True + sle Progenitor (label) aSLE - aHD 50 / 35392 60 / 41440 6 / 21000 0 / 15000 -0.01 0.03 False + sle Progenitor (label) cSLE - cHD 175 / 195838 67 / 85565 26 / 99000 3 / 33000 0.01 0.02 True + sle Proliferating T (label) aSLE - aHD 235 / 20730 69 / 27704 108 / 12979 13 / 10265 1.12 0.85 True + sle Proliferating T (label) cSLE - cHD 1532 / 111977 117 / 56080 426 / 60156 14 / 23121 1.84 0.73 True + sle ABC / DN2 B aSLE - aHD 65 / 936 85 / 2442 3 / 911 8 / 1221 4.71 -0.38 False + sle ABC / DN2 B cSLE - cHD 1669 / 21628 394 / 10482 63 / 12436 29 / 4743 4.71 -0.14 False + sle GZMK+ CD8 T aSLE - aHD 1559 / 7125 1207 / 5039 966 / 2969 609 / 1747 -0.75 -1.97 True + sle GZMK+ CD8 T cSLE - cHD 5363 / 39111 954 / 17779 3448 / 13518 1021 / 4111 7.49 0.47 True + sle Cytotoxic CD4 T aSLE - aHD 144 / 9990 96 / 17255 75 / 7915 43 / 7211 2.28 0.59 True + sle Cytotoxic CD4 T cSLE - cHD 869 / 51287 362 / 27662 230 / 39554 84 / 16876 1.31 0.10 True + sle MS1 monocyte aSLE - aHD 644 / 9639 648 / 6619 70 / 3390 17 / 1665 -1.35 0.76 False + sle MS1 monocyte cSLE - cHD 7017 / 45551 668 / 9092 262 / 14947 32 / 1831 6.54 -0.50 False + sle ISG-high monocyte aSLE - aHD 3051 / 9639 105 / 6619 778 / 3390 12 / 1665 31.00 18.82 True + sle ISG-high monocyte cSLE - cHD 17241 / 45551 280 / 9092 4134 / 14947 19 / 1831 32.39 22.75 True + sle Platelet-bound monocyte aSLE - aHD 386 / 9639 95 / 6619 35 / 3390 14 / 1665 2.54 0.53 True + sle Platelet-bound monocyte cSLE - cHD 1400 / 45551 378 / 9092 150 / 14947 10 / 1831 -0.98 0.41 False + sle Granulocyte-like (LDG) aSLE - aHD 216 / 35392 136 / 41440 2 / 21000 0 / 15000 0.29 0.01 True + sle Granulocyte-like (LDG) cSLE - cHD 1531 / 195838 224 / 85565 6 / 99000 1 / 33000 0.47 0.00 True diff --git a/paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/v1_provisional_markers/summary.csv b/paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/v1_provisional_markers/summary.csv new file mode 100644 index 0000000000000000000000000000000000000000..724d4dd82e181454d0a824b19e4954fd776f6223 --- /dev/null +++ b/paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/v1_provisional_markers/summary.csv @@ -0,0 +1,37 @@ +dataset,state,genes_used,k,thin,gen,obs_thinned,obs_native_n,gen_pct,obs_pct,gen_over_obs,spearman +dress,C1Q-high monocyte (reference),C1QA C1QB C1QC,2,0.607,"110 / 3,793","529 / 4,485",586,2.9000790930661746,11.794871794871796,0.24587627093387132,0.9642857142857145 +dress,Plasmablast (label),,,1.0,"76 / 35,000","187 / 33,712",187,0.21714285714285714,0.5546986236355007,0.39146096256684493,0.5714285714285715 +dress,Plasmablast (markers),MZB1 JCHAIN TNFRSF17 PRDM1 TXNDC5,3,0.887,"68 / 1,938","203 / 2,245",216,3.508771929824561,9.042316258351892,0.38803906317517933,0.3214285714285715 +dress,Progenitor (label),,,1.0,"20 / 35,000","35 / 33,712",35,0.05714285714285714,0.10382059800664452,0.5504,0.43244998209386837 +dress,Proliferating T (label),,,1.0,"1,001 / 27,578","4,226 / 24,482",4226,3.6297048371890637,17.261661628951884,0.2102755178042183,0.642857142857143 +dress,ABC / DN2 B,ITGAX TBX21 FCRL5 ZEB2,2,0.887,"39 / 1,938","193 / 2,245",221,2.0123839009287927,8.596881959910913,0.23408299780233885,-0.21428571428571433 +dress,GZMK+ CD8 T,GZMK,1,1.0,"1,138 / 6,901","838 / 6,038",838,16.490363715403564,13.878767803908579,1.188172029995307,0.9642857142857145 +dress,Cytotoxic CD4 T,GZMB PRF1 GNLY GZMH NKG7,3,1.0,"41 / 17,909","9 / 12,541",9,0.22893517225975765,0.07176461207240252,3.190084439232912,0.594618725379069 +dress,MS1 monocyte,RETN ALOX5AP IL1R2 CYP1B1 MCEMP1 PLAC8,3,0.607,"184 / 3,793","417 / 4,485",797,4.851041392037964,9.297658862876254,0.521748696481781,0.6785714285714287 +dress,ISG-high monocyte,IFI27 IFI44L ISG15 MX1 RSAD2 SIGLEC1 IFIT1 IFIT3 OAS1,4,0.607,"12 / 3,793","131 / 4,485",242,0.3163722646981281,2.9208472686733558,0.10831523718863394,0.5169078021169037 +dress,Platelet-bound monocyte,PPBP PF4 TUBB1 GP9,2,0.607,"6 / 3,793","26 / 4,485",41,0.15818613234906406,0.5797101449275363,0.2728710783021355,0.576086956521739 +dress,Granulocyte-like (LDG),ELANE MPO CAMP LCN2 CSF3R CXCR2,2,0.967,"0 / 35,000","404 / 33,712",421,0.0,1.1983863312766967,0.0, +kawasaki,C1Q-high monocyte (reference),C1QA C1QB C1QC,2,1.0,"43 / 7,927","603 / 11,050",603,0.5424498549262016,5.457013574660634,0.09940416081151786,0.17297999283754734 +kawasaki,Plasmablast (label),,,1.0,"206 / 75,000","1,837 / 103,362",1837,0.27466666666666667,1.7772488922427971,0.15454597713663581,0.5583563931615944 +kawasaki,Plasmablast (markers),MZB1 JCHAIN TNFRSF17 PRDM1 TXNDC5,3,1.0,"237 / 20,998","1,654 / 21,517",1654,1.1286789218020763,7.6869452061160946,0.1468306188658723,0.6035714285714285 +kawasaki,Progenitor (label),,,1.0,"71 / 75,000","175 / 103,362",175,0.09466666666666666,0.1693078694297711,0.5591392,0.7164951568756692 +kawasaki,Proliferating T (label),,,1.0,"330 / 42,408","1,146 / 57,032",1146,0.77815506508206,2.009398232571188,0.38725776327888345,0.1928571428571428 +kawasaki,ABC / DN2 B,ITGAX TBX21 FCRL5 ZEB2,2,1.0,"397 / 20,998","907 / 21,517",907,1.8906562529764739,4.215271645675513,0.44852536488748385,-0.2642857142857143 +kawasaki,GZMK+ CD8 T,GZMK,1,1.0,"1,884 / 11,370","746 / 15,371",746,16.569920844327175,4.853295166222106,3.414158891396153,0.3428571428571428 +kawasaki,Cytotoxic CD4 T,GZMB PRF1 GNLY GZMH NKG7,3,1.0,"94 / 26,586","163 / 28,856",163,0.35356954788234407,0.5648738563903521,0.6259265566682772,0.4612799809001262 +kawasaki,MS1 monocyte,RETN ALOX5AP IL1R2 CYP1B1 MCEMP1 PLAC8,3,1.0,"1,442 / 7,927","3,263 / 11,050",3263,18.190992809385644,29.529411764705884,0.6160296369712269,0.6785714285714285 +kawasaki,ISG-high monocyte,IFI27 IFI44L ISG15 MX1 RSAD2 SIGLEC1 IFIT1 IFIT3 OAS1,4,1.0,"280 / 7,927","2,256 / 11,050",2256,3.532231613472941,20.41628959276018,0.17301045801806736,0.17821127702606046 +kawasaki,Platelet-bound monocyte,PPBP PF4 TUBB1 GP9,2,1.0,"27 / 7,927","649 / 11,050",649,0.3406080484420336,5.873303167420814,0.05799258760068523,0.3673334485639205 +kawasaki,Granulocyte-like (LDG),ELANE MPO CAMP LCN2 CSF3R CXCR2,2,1.0,"12 / 75,000","2,236 / 103,362",2236,0.016,2.163270834542675,0.007396207513416816,0.7940844788408192 +sle,C1Q-high monocyte (reference),C1QA C1QB C1QC,2,0.957,"109 / 21,833","1,798 / 70,901",1823,0.499244263271195,2.5359303817999748,0.19686828426135147,0.40405326166118033 +sle,Plasmablast (label),,,1.0,"85 / 168,000","1,526 / 358,235",1526,0.050595238095238096,0.42597736122936064,0.11877447653373276,0.19002519863132827 +sle,Plasmablast (markers),MZB1 TNFRSF17 PRDM1 TXNDC5,3,1.0,"72 / 19,311","1,298 / 35,488",1298,0.37284449277613796,3.6575743913435526,0.10193763759352531,0.14813086865365177 +sle,Progenitor (label),,,1.0,"35 / 168,000","352 / 358,235",352,0.020833333333333332,0.09825952238056025,0.2120235558712121,0.33472476145258456 +sle,Proliferating T (label),,,1.0,"561 / 106,521","1,953 / 216,491",1953,0.5266567155772102,0.9021160232988901,0.5838015310395587,0.670138401025515 +sle,ABC / DN2 B,ITGAX TBX21 FCRL5 ZEB2,2,1.0,"103 / 19,311","2,213 / 35,488",2213,0.5333747604991973,6.235910730387737,0.08553277677630146,-0.2718355039783739 +sle,GZMK+ CD8 T,GZMK,1,1.0,"6,044 / 22,345","9,083 / 69,054",9083,27.048556724099353,13.153474092739016,2.056381191264953,0.44976076555023925 +sle,Cytotoxic CD4 T,GZMB PRF1 GNLY GZMH NKG7,3,1.0,"432 / 71,556","1,471 / 106,194",1471,0.6037229582424953,1.3852006704710247,0.43583790501430014,0.6385618347110514 +sle,MS1 monocyte,RETN ALOX5AP IL1R2 CYP1B1 PLAC8,3,0.957,"381 / 21,833","8,977 / 70,901",9480,1.7450648101497732,12.661316483547482,0.13782649003501066,0.043753953156657185 +sle,ISG-high monocyte,IFI27 IFI44L ISG15 MX1 RSAD2 SIGLEC1 IFIT1 IFIT3 OAS1,4,0.957,"4,943 / 21,833","20,677 / 70,901",21269,22.64004030595887,29.16319939069971,0.7763222410082651,0.8368137881033272 +sle,Platelet-bound monocyte,PPBP PF4 TUBB1 GP9,2,0.957,"209 / 21,833","2,259 / 70,901",2315,0.9572665231530252,3.186132776688622,0.30044778113356635,0.1503215921733296 +sle,Granulocyte-like (LDG),ELANE MPO CAMP LCN2 CSF3R CXCR2,2,1.0,"9 / 168,000","2,107 / 358,235",2107,0.005357142857142857,0.5881614024313648,0.009108287002508646,0.18801031804872972 diff --git a/paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/tools/corpus_states.py b/paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/tools/corpus_states.py new file mode 100644 index 0000000000000000000000000000000000000000..4cbd258d9a4c65990124ebdb02a6b94d3c08813b --- /dev/null +++ b/paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/tools/corpus_states.py @@ -0,0 +1,77 @@ +#!/usr/bin/env python3 +"""How common is each rare state of tools/states.json in the pretraining corpus? (CPU only; 2026-10-04) + +Re-uses the corpus sample of plans/behcet_c1q_lora3_20261004 (corpus_c1q.py extract: 179,750 cells, random blocks of +every one of the 22 corpus datasets, 6k panel; frozen f01common scANVI labels in work/corpus_c1q/scanvi_labels). The +h5ad itself lives on spark-0110 (sha-checked .moved marker); pass a local copy. Rates are at native depth (no +thinning) and use the same state rules as screen.py. A gene is counted only in datasets where it was measured +(column sum > 0 in that dataset's sample); a state with a missing gene in a dataset is flagged. +usage: corpus_states.py CORPUS_SAMPLE_H5AD output: out/corpus_states.csv +""" +from __future__ import annotations + +import json +import sys +from pathlib import Path + +import anndata as ad +import numpy as np +import pandas as pd +import scipy.sparse as sp + +sys.path.insert(0, str(Path(__file__).resolve().parent)) +from screen import call_state, state_cols # noqa: E402 same state rules as the generated-vs-observed screen + +PLAN = Path(__file__).resolve().parents[1] +LABELS = PLAN.parent / "behcet_c1q_lora3_20261004/work/corpus_c1q/scanvi_labels/labels.parquet" +CANON = Path("/home/sj_server_1/gblee/datalake/paired-pbmc-bulk-sc/processing/strict_qc_v1_20260913/reference/" + "canonical_genes.tsv") + + +from screen import parent_mask # noqa: E402 + + +def main() -> int: + a = ad.read_h5ad(sys.argv[1]) + lab = pd.read_parquet(LABELS) + if len(lab) != a.n_obs: + raise SystemExit("labels / cells differ") + states = json.loads((PLAN / "tools/states.json").read_text()) + canon = pd.read_csv(CANON, sep="\t", dtype=str) + sym2id = dict(zip(canon.gene_symbol, canon.gene_id)) + pos = {g: i for i, g in enumerate(a.var_names.astype(str))} + X = sp.csr_matrix(a.X) + ds = a.obs.dataset_id.astype(str).to_numpy() + rows = [] + for d in pd.unique(ds): + m = ds == d + Xd = X[m] + measured = np.asarray(Xd.sum(0)).ravel() > 0 + ld = lab[m].reset_index(drop=True) + for st in states: + pm = parent_mask(ld, st["parent"]) + rec = {"dataset_id": d, "state": st["name"], "parent_cells": int(pm.sum())} + if st["kind"] == "label": + h = ld.aifi_l2.isin(st["labels"]).to_numpy() & pm + rec["missing_genes"] = "" + else: + genes, pcols, req, exc = state_cols(st, sym2id, pos) + rec["missing_genes"] = " ".join(g for g, c in zip(genes, pcols) if not measured[c]) + cols = pcols + [c for r in req for c in r] + exc + h = call_state(Xd[:, cols].toarray(), st, len(pcols), req, exc) & pm + rec["state_cells"] = int(h.sum()) + rec["pct"] = 100 * rec["state_cells"] / rec["parent_cells"] if rec["parent_cells"] else np.nan + rows.append(rec) + t = pd.DataFrame(rows) + t.to_csv(PLAN / "out/corpus_states.csv", index=False) + w = t.assign(short=t.dataset_id.str.slice(0, 40)).pivot(index="short", columns="state", values="pct") + tot = t.groupby("state")[["state_cells", "parent_cells"]].sum() + with pd.option_context("display.width", 300, "display.max_columns", 30): + print(w.round(2).to_string()) + print((tot.assign(pct=100 * tot.state_cells / tot.parent_cells)).round(3).to_string()) + print(t[t.missing_genes != ""][["dataset_id", "state", "missing_genes"]].to_string(index=False)) + return 0 + + +if __name__ == "__main__": + sys.exit(main())