diff --git a/paper-releases/20260928/diffusion/data/inference_inputs/server_1/plans/behcet_c1q_repro_20260921/conditions/external_contract_validation.json b/paper-releases/20260928/diffusion/data/inference_inputs/server_1/plans/behcet_c1q_repro_20260921/conditions/external_contract_validation.json
new file mode 100644
index 0000000000000000000000000000000000000000..a61c4c20a27b76fd93d5698725c9e29236293775
--- /dev/null
+++ b/paper-releases/20260928/diffusion/data/inference_inputs/server_1/plans/behcet_c1q_repro_20260921/conditions/external_contract_validation.json
@@ -0,0 +1,36 @@
+{
+  "status": "PASS",
+  "loader": "pbisc_sdd.experiment.load_external_bulk_conditions",
+  "adapter": "SimpleNamespace streams adapter (tests/test_experiment.py::_external_streams pattern) carrying the real 20,097-gene canonical panel, the checkpoint's panel_positions and the real Model 7 conditioner replayed on CPU",
+  "checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/s0_6k_allK_topup16_seed20260627_lossactive_v1/checkpoint_epoch_008.pt",
+  "checkpoint_sha256": "a5ec185b1dd070890115d02f5fdb897ab5a6c790b51daf66bb47932925be8a7e",
+  "checkpoint_schema": "pbisc_sdd.checkpoint.ladder.v1",
+  "base_conditions_shape": [
+    19,
+    6006
+  ],
+  "bulk_measurement_fraction_shape": [
+    19,
+    6000
+  ],
+  "output_availability_mask_shape": [
+    19,
+    6000
+  ],
+  "recipe_k_shape": [
+    19
+  ],
+  "cells_per_bulk_shape": [
+    19
+  ],
+  "sample_ids_shape": [
+    19
+  ],
+  "sample_ids_match_emitted_order": true,
+  "recipe_k_matches_emitted": true,
+  "cells_per_bulk_all_equal": 5000,
+  "base_conditions_finite": true,
+  "selected_panel_genes": 6000,
+  "selected_panel_genes_measured_in_bulk": 5972,
+  "input_sha256": "57c5a2dcd775c7888318bc4b202241a9629bedffd418e2336a793b76f5c1e312"
+}
diff --git a/paper-releases/20260928/diffusion/data/inference_inputs/server_1/plans/behcet_c1q_repro_20260921/conditions/genes.csv b/paper-releases/20260928/diffusion/data/inference_inputs/server_1/plans/behcet_c1q_repro_20260921/conditions/genes.csv
new file mode 100644
index 0000000000000000000000000000000000000000..66a979375f2fa664d4d968f53f4223ddd93eb2b3
--- /dev/null
+++ b/paper-releases/20260928/diffusion/data/inference_inputs/server_1/plans/behcet_c1q_repro_20260921/conditions/genes.csv
@@ -0,0 +1,20098 @@
+panel_index,gene_id,gene_symbol,bulk_row,measured
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+8214,ENSG00000147459,DOCK5,2499,True
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+9347,ENSG00000188483,IER5L,10533,True
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+9349,ENSG00000179058,C9orf50,31616,True
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+9351,ENSG00000167157,PRRX2,33101,True
+9352,ENSG00000148344,PTGES,18402,True
+9353,ENSG00000136816,TOR1B,5070,True
+9354,ENSG00000136827,TOR1A,4706,True
+9355,ENSG00000136819,C9orf78,2802,True
+9356,ENSG00000136878,USP20,1554,True
+9357,ENSG00000187239,FNBP1,612,True
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+9359,ENSG00000107130,NCS1,17411,True
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+9362,ENSG00000107164,FUBP3,3609,True
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+11307,ENSG00000170962,PDGFD,8812,True
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+11311,ENSG00000137757,CASP5,13389,True
+11312,ENSG00000137752,CASP1,1106,True
+11313,ENSG00000204397,CARD16,4008,True
+11314,ENSG00000255501,CARD18,41329,True
+11315,ENSG00000152578,GRIA4,22070,True
+11316,ENSG00000170903,MSANTD4,8694,True
+11317,ENSG00000182359,KBTBD3,12311,True
+11318,ENSG00000149313,AASDHPPT,7458,True
+11319,ENSG00000152402,GUCY1A2,28830,True
+11320,ENSG00000152404,CWF19L2,8044,True
+11321,ENSG00000137760,ALKBH8,8930,True
+11322,ENSG00000110675,ELMOD1,40690,True
+11323,ENSG00000170290,SLN,38465,True
+11324,ENSG00000110660,SLC35F2,11324,True
+11325,ENSG00000179331,RAB39A,12726,True
+11326,ENSG00000166266,CUL5,5001,True
+11327,ENSG00000075239,ACAT1,8146,True
+11328,ENSG00000149308,NPAT,5280,True
+11329,ENSG00000149311,ATM,215,True
+11330,ENSG00000166323,C11orf65,12022,True
+11331,ENSG00000178202,KDELC2,8923,True
+11332,ENSG00000110723,EXPH5,13901,True
+11333,ENSG00000178105,DDX10,8895,True
+11334,ENSG00000185742,C11orf87,33005,True
+11335,ENSG00000137710,RDX,8183,True
+11336,ENSG00000149289,ZC3H12C,12314,True
+11337,ENSG00000137714,FDX1,7460,True
+11338,ENSG00000137727,ARHGAP20,21009,True
+11339,ENSG00000150750,C11orf53,31276,True
+11340,ENSG00000214290,COLCA2,22183,True
+11341,ENSG00000110777,POU2AF1,5685,True
+11342,ENSG00000137707,BTG4,57566,True
+11343,ENSG00000183644,C11orf88,34189,True
+11344,ENSG00000204381,LAYN,17548,True
+11345,ENSG00000170145,SIK2,4812,True
+11346,ENSG00000137713,PPP2R1B,6687,True
+11347,ENSG00000086848,ALG9,11191,True
+11348,ENSG00000258529,ENSG00000258529,51657,True
+11349,ENSG00000255561,FDXACB1,14846,True
+11350,ENSG00000137720,C11orf1,12129,True
+11351,ENSG00000109846,CRYAB,31326,True
+11352,ENSG00000170276,HSPB2,37773,True
+11353,ENSG00000254445,HSPB2-C11orf52,48823,True
+11354,ENSG00000149300,C11orf52,46823,True
+11355,ENSG00000150764,DIXDC1,14482,True
+11356,ENSG00000150768,DLAT,7297,True
+11357,ENSG00000150773,PIH1D2,27126,True
+11358,ENSG00000150776,C11orf57,7116,True
+11359,ENSG00000150779,TIMM8B,8737,True
+11360,ENSG00000204370,SDHD,5982,True
+11361,ENSG00000255292,ENSG00000255292,26400,True
+11362,ENSG00000150782,IL18,10872,True
+11363,ENSG00000150783,TEX12,21255,True
+11364,ENSG00000197580,BCO2,13910,True
+11365,ENSG00000150787,PTS,9866,True
+11366,ENSG00000188771,PLET1,21811,True
+11367,ENSG00000149294,NCAM1,5812,True
+11368,ENSG00000149292,TTC12,7706,True
+11369,ENSG00000170209,ANKK1,14734,True
+11370,ENSG00000149295,DRD2,33712,True
+11371,ENSG00000166682,TMPRSS5,14337,True
+11372,ENSG00000086827,ZW10,9616,True
+11373,ENSG00000228607,CLDN25,36963,True
+11374,ENSG00000048028,USP28,3705,True
+11375,ENSG00000149305,HTR3B,27768,True
+11376,ENSG00000166736,HTR3A,18608,True
+11377,ENSG00000109906,ZBTB16,7488,True
+11378,ENSG00000166741,NNMT,22881,True
+11379,ENSG00000180425,C11orf71,12057,True
+11380,ENSG00000076053,RBM7,8710,True
+11381,ENSG00000255663,ENSG00000255663,30834,True
+11382,ENSG00000076043,REXO2,7766,True
+11383,ENSG00000095110,NXPE1,29022,True
+11384,ENSG00000137634,NXPE4,33051,True
+11385,ENSG00000204361,NXPE2,33142,True
+11386,ENSG00000182985,CADM1,11282,True
+11387,ENSG00000137656,BUD13,7862,True
+11388,ENSG00000109917,ZPR1,4512,True
+11389,ENSG00000110243,APOA5,49820,True
+11390,ENSG00000110244,APOA4,39674,True
+11391,ENSG00000110245,APOC3,29442,True
+11392,ENSG00000118137,APOA1,20773,True
+11393,ENSG00000160584,SIK3,1614,True
+11394,ENSG00000168092,PAFAH1B2,5206,True
+11395,ENSG00000149577,SIDT2,1326,True
+11396,ENSG00000149591,TAGLN,3945,True
+11397,ENSG00000160613,PCSK7,584,True
+11398,ENSG00000167257,RNF214,7772,True
+11399,ENSG00000186318,BACE1,10126,True
+11400,ENSG00000110274,CEP164,3423,True
+11401,ENSG00000177103,DSCAML1,20013,True
+11402,ENSG00000137731,FXYD2,19767,True
+11403,ENSG00000255245,FXYD6-FXYD2,47794,True
+11404,ENSG00000137726,FXYD6,12172,True
+11405,ENSG00000137747,TMPRSS13,11536,True
+11406,ENSG00000110324,IL10RA,171,True
+11407,ENSG00000255274,TMPRSS4-AS1,12285,True
+11408,ENSG00000137648,TMPRSS4,33524,True
+11409,ENSG00000177098,SCN4B,20340,True
+11410,ENSG00000149575,SCN2B,32495,True
+11411,ENSG00000160593,JAML,332,True
+11412,ENSG00000160588,MPZL3,7511,True
+11413,ENSG00000149573,MPZL2,10535,True
+11414,ENSG00000198851,CD3E,461,True
+11415,ENSG00000167286,CD3D,2018,True
+11416,ENSG00000160654,CD3G,3492,True
+11417,ENSG00000110344,UBE4A,3159,True
+11418,ENSG00000167283,ATP5L,6815,True
+11419,ENSG00000285827,ENSG00000285827,24352,True
+11420,ENSG00000118058,KMT2A,794,True
+11421,ENSG00000172425,TTC36,21204,True
+11422,ENSG00000149582,TMEM25,10019,True
+11423,ENSG00000118096,IFT46,11163,True
+11424,ENSG00000095139,ARCN1,2444,True
+11425,ENSG00000019144,PHLDB1,14619,True
+11426,ENSG00000118094,TREH,39025,True
+11427,ENSG00000110367,DDX6,688,True
+11428,ENSG00000160683,CXCR5,13233,True
+11429,ENSG00000186174,BCL9L,424,True
+11430,ENSG00000110375,UPK2,17814,True
+11431,ENSG00000176302,FOXR1,29256,True
+11432,ENSG00000186166,CCDC84,4684,True
+11433,ENSG00000118181,RPS25,167,True
+11434,ENSG00000196655,TRAPPC4,6923,True
+11435,ENSG00000137700,SLC37A4,8306,True
+11436,ENSG00000149428,HYOU1,2430,True
+11437,ENSG00000160695,VPS11,3016,True
+11438,ENSG00000256269,HMBS,9822,True
+11439,ENSG00000188486,H2AFX,7583,True
+11440,ENSG00000172269,DPAGT1,6306,True
+11441,ENSG00000172375,C2CD2L,3445,True
+11442,ENSG00000172273,HINFP,6342,True
+11443,ENSG00000172350,ABCG4,32229,True
+11444,ENSG00000160703,NLRX1,6497,True
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+11446,ENSG00000248712,CCDC153,14391,True
+11447,ENSG00000110395,CBL,1285,True
+11448,ENSG00000076706,MCAM,14437,True
+11449,ENSG00000173456,RNF26,6790,True
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+11451,ENSG00000235718,MFRP,36246,True
+11452,ENSG00000036672,USP2,25700,True
+11453,ENSG00000154096,THY1,30007,True
+11454,ENSG00000110400,NECTIN1,7878,True
+11455,ENSG00000137699,TRIM29,38954,True
+11456,ENSG00000184232,OAF,6147,True
+11457,ENSG00000137709,POU2F3,22396,True
+11458,ENSG00000181264,TMEM136,23142,True
+11459,ENSG00000196914,ARHGEF12,4596,True
+11460,ENSG00000149403,GRIK4,17566,True
+11461,ENSG00000154114,TBCEL,8350,True
+11462,ENSG00000285509,TBCEL-TECTA,25371,True
+11463,ENSG00000109927,TECTA,15770,True
+11464,ENSG00000109929,SC5D,8070,True
+11465,ENSG00000137642,SORL1,180,True
+11466,ENSG00000259571,BLID,51402,True
+11467,ENSG00000154127,UBASH3B,6034,True
+11468,ENSG00000109943,CRTAM,9573,True
+11469,ENSG00000109944,C11orf63,12134,True
+11470,ENSG00000188909,BSX,53043,True
+11471,ENSG00000109971,HSPA8,188,True
+11472,ENSG00000166250,CLMP,16812,True
+11473,ENSG00000023171,GRAMD1B,6113,True
+11474,ENSG00000166257,SCN3B,18832,True
+11475,ENSG00000166261,ZNF202,7453,True
+11476,ENSG00000221931,OR6X1,51123,True
+11477,ENSG00000196099,OR6M1,52974,True
+11478,ENSG00000204300,TMEM225,53692,True
+11479,ENSG00000181518,OR8D4,50312,True
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+11482,ENSG00000196248,OR10S1,47530,True
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+11484,ENSG00000254737,OR10G4,54578,True
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+11491,ENSG00000181214,OR8G2P,55938,True
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+11494,ENSG00000196341,OR8D1,40050,True
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+11684,ENSG00000111732,AICDA,23105,True
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+11689,ENSG00000003056,M6PR,1443,True
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+11691,ENSG00000175899,A2M,8971,True
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+11694,ENSG00000069493,CLEC2D,928,True
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+11698,ENSG00000256797,KLRF2,27595,True
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+14061,ENSG00000197696,NMB,13507,True
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+14069,ENSG00000273540,AGBL1,41268,True
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+14074,ENSG00000140543,DET1,11735,True
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+14076,ENSG00000172183,ISG20,2000,True
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+14079,ENSG00000140545,MFGE8,5854,True
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+14081,ENSG00000140522,RLBP1,18686,True
+14082,ENSG00000140525,FANCI,8528,True
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+14086,ENSG00000140534,TICRR,16799,True
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+14093,ENSG00000166825,ANPEP,896,True
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+14137,ENSG00000154227,CERS3,17629,True
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+14161,ENSG00000007392,LUC7L,1900,True
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+17956,ENSG00000270299,ENSG00000270299,31486,True
+17957,ENSG00000215397,SCRT2,28033,True
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+17959,ENSG00000125898,FAM110A,3714,True
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+17962,ENSG00000125818,PSMF1,2307,True
+17963,ENSG00000125895,TMEM74B,17266,True
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+17969,ENSG00000088832,FKBP1A,1154,True
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+17972,ENSG00000125900,SIRPD,14514,True
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+18343,ENSG00000064655,EYA2,22400,True
+18344,ENSG00000101040,ZMYND8,3720,True
+18345,ENSG00000124151,NCOA3,1422,True
+18346,ENSG00000196562,SULF2,963,True
+18347,ENSG00000124126,PREX1,225,True
+18348,ENSG00000124198,ARFGEF2,2629,True
+18349,ENSG00000124207,CSE1L,5673,True
+18350,ENSG00000124214,STAU1,3384,True
+18351,ENSG00000124228,DDX27,3366,True
+18352,ENSG00000124201,ZNFX1,1795,True
+18353,ENSG00000158445,KCNB1,21323,True
+18354,ENSG00000124212,PTGIS,31883,True
+18355,ENSG00000158470,B4GALT5,2971,True
+18356,ENSG00000197818,SLC9A8,3239,True
+18357,ENSG00000158480,SPATA2,8437,True
+18358,ENSG00000124226,RNF114,2097,True
+18359,ENSG00000124216,SNAI1,17244,True
+18360,ENSG00000244687,UBE2V1,8539,True
+18361,ENSG00000124208,PEDS1-UBE2V1,47787,True
+18362,ENSG00000240849,TMEM189,7123,True
+18363,ENSG00000172216,CEBPB,1020,True
+18364,ENSG00000196396,PTPN1,1995,True
+18365,ENSG00000042062,RIPOR3,11173,True
+18366,ENSG00000124171,PARD6B,14185,True
+18367,ENSG00000124243,BCAS4,7196,True
+18368,ENSG00000101126,ADNP,2668,True
+18369,ENSG00000000419,DPM1,7026,True
+18370,ENSG00000124217,MOCS3,11239,True
+18371,ENSG00000026559,KCNG1,12860,True
+18372,ENSG00000101096,NFATC2,1851,True
+18373,ENSG00000054793,ATP9A,9273,True
+18374,ENSG00000101115,SALL4,20294,True
+18375,ENSG00000020256,ZFP64,9200,True
+18376,ENSG00000182463,TSHZ2,9800,True
+18377,ENSG00000171940,ZNF217,1875,True
+18378,ENSG00000064787,BCAS1,16102,True
+18379,ENSG00000019186,CYP24A1,21354,True
+18380,ENSG00000101132,PFDN4,9935,True
+18381,ENSG00000101134,DOK5,31452,True
+18382,ENSG00000054803,CBLN4,48832,True
+18383,ENSG00000124089,MC3R,56434,True
+18384,ENSG00000124098,FAM210B,5971,True
+18385,ENSG00000087586,AURKA,14462,True
+18386,ENSG00000101138,CSTF1,7720,True
+18387,ENSG00000087589,CASS4,9790,True
+18388,ENSG00000022277,RTFDC1,3580,True
+18389,ENSG00000124091,GCNT7,14182,True
+18390,ENSG00000124103,FAM209A,14730,True
+18391,ENSG00000213714,FAM209B,17205,True
+18392,ENSG00000087510,TFAP2C,37811,True
+18393,ENSG00000101144,BMP7,34501,True
+18394,ENSG00000054796,SPO11,53710,True
+18395,ENSG00000101146,RAE1,6307,True
+18396,ENSG00000132819,RBM38,1220,True
+18397,ENSG00000124097,HMGB1P1,30470,True
+18398,ENSG00000124092,CTCFL,32139,True
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+18400,ENSG00000124256,ZBP1,3363,True
+18401,ENSG00000124225,PMEPA1,11615,True
+18402,ENSG00000124237,C20orf85,35729,True
+18403,ENSG00000124227,ANKRD60,40316,True
+18404,ENSG00000124209,RAB22A,4875,True
+18405,ENSG00000124164,VAPB,5952,True
+18406,ENSG00000198768,APCDD1L,22362,True
+18407,ENSG00000124222,STX16,979,True
+18408,ENSG00000254995,STX16-NPEPL1,7312,True
+18409,ENSG00000215440,NPEPL1,2090,True
+18410,ENSG00000087460,GNAS,150,True
+18411,ENSG00000101158,NELFCD,2285,True
+18412,ENSG00000101160,CTSZ,310,True
+18413,ENSG00000101162,TUBB1,876,True
+18414,ENSG00000124172,ATP5E,1486,True
+18415,ENSG00000101166,PRELID3B,5101,True
+18416,ENSG00000124203,ZNF831,2542,True
+18417,ENSG00000124205,EDN3,17636,True
+18418,ENSG00000087495,PHACTR3,18894,True
+18419,ENSG00000196074,SYCP2,9151,True
+18420,ENSG00000196227,FAM217B,6249,True
+18421,ENSG00000132825,PPP1R3D,8662,True
+18422,ENSG00000124215,CDH26,12675,True
+18423,ENSG00000179242,CDH4,15703,True
+18424,ENSG00000130699,TAF4,4662,True
+18425,ENSG00000149657,LSM14B,3474,True
+18426,ENSG00000101182,PSMA7,1523,True
+18427,ENSG00000184402,SS18L1,5461,True
+18428,ENSG00000101181,MTG2,5967,True
+18429,ENSG00000101180,HRH3,29882,True
+18430,ENSG00000130703,OSBPL2,3026,True
+18431,ENSG00000130706,ADRM1,3776,True
+18432,ENSG00000130702,LAMA5,7816,True
+18433,ENSG00000171858,RPS21,627,True
+18434,ENSG00000149679,CABLES2,9041,True
+18435,ENSG00000130701,RBBP8NL,37703,True
+18436,ENSG00000130700,GATA5,56363,True
+18437,ENSG00000101187,SLCO4A1,15540,True
+18438,ENSG00000101188,NTSR1,10747,True
+18439,ENSG00000101189,MRGBP,7048,True
+18440,ENSG00000060491,OGFR,725,True
+18441,ENSG00000092758,COL9A3,12103,True
+18442,ENSG00000101190,TCFL5,9415,True
+18443,ENSG00000101191,DIDO1,862,True
+18444,ENSG00000101193,GID8,3472,True
+18445,ENSG00000101194,SLC17A9,5336,True
+18446,ENSG00000125533,BHLHE23,40139,True
+18447,ENSG00000149658,YTHDF1,3249,True
+18448,ENSG00000101197,BIRC7,18022,True
+18449,ENSG00000101198,NKAIN4,25522,True
+18450,ENSG00000101199,ARFGAP1,1013,True
+18451,ENSG00000101203,COL20A1,21065,True
+18452,ENSG00000101204,CHRNA4,33225,True
+18453,ENSG00000075043,KCNQ2,26915,True
+18454,ENSG00000101210,EEF1A2,17182,True
+18455,ENSG00000125534,PPDPF,3822,True
+18456,ENSG00000101213,PTK6,11538,True
+18457,ENSG00000125508,SRMS,19423,True
+18458,ENSG00000125531,FNDC11,12761,True
+18459,ENSG00000130589,HELZ2,1049,True
+18460,ENSG00000101216,GMEB2,4048,True
+18461,ENSG00000197457,STMN3,2305,True
+18462,ENSG00000258366,RTEL1,11028,True
+18463,ENSG00000026036,RTEL1-TNFRSF6B,7581,True
+18464,ENSG00000243509,TNFRSF6B,42976,True
+18465,ENSG00000101246,ARFRP1,3356,True
+18466,ENSG00000197114,ZGPAT,5337,True
+18467,ENSG00000273154,ENSG00000273154,17538,True
+18468,ENSG00000203896,LIME1,10426,True
+18469,ENSG00000273047,ENSG00000273047,36001,True
+18470,ENSG00000125520,SLC2A4RG,1752,True
+18471,ENSG00000130584,ZBTB46,8717,True
+18472,ENSG00000183260,ABHD16B,54551,True
+18473,ENSG00000101150,TPD52L2,1781,True
+18474,ENSG00000101152,DNAJC5,1155,True
+18475,ENSG00000198276,UCKL1,3069,True
+18476,ENSG00000196700,ZNF512B,4275,True
+18477,ENSG00000130590,SAMD10,7382,True
+18478,ENSG00000101161,PRPF6,2116,True
+18479,ENSG00000196421,C20orf204,11856,True
+18480,ENSG00000203883,SOX18,22093,True
+18481,ENSG00000171703,TCEA2,6058,True
+18482,ENSG00000171700,RGS19,1551,True
+18483,ENSG00000125510,OPRL1,8691,True
+18484,ENSG00000171695,LKAAEAR1,16409,True
+18485,ENSG00000196132,MYT1,25800,True
+18486,ENSG00000125522,NPBWR2,35096,True
+18487,ENSG00000203880,PCMTD2,1894,True
+18488,ENSG00000274391,TPTE,51808,True
+18489,ENSG00000166351,POTED,49602,True
+18490,ENSG00000188992,LIPI,26456,True
+18491,ENSG00000185272,RBM11,14087,True
+18492,ENSG00000155304,HSPA13,7121,True
+18493,ENSG00000155307,SAMSN1,4934,True
+18494,ENSG00000180530,NRIP1,5528,True
+18495,ENSG00000155313,USP25,2979,True
+18496,ENSG00000154639,CXADR,21646,True
+18497,ENSG00000154640,BTG3,10475,True
+18498,ENSG00000154642,C21orf91,5258,True
+18499,ENSG00000154645,CHODL,19473,True
+18500,ENSG00000154646,TMPRSS15,29826,True
+18501,ENSG00000154654,NCAM2,29458,True
+18502,ENSG00000154719,MRPL39,10058,True
+18503,ENSG00000154721,JAM2,17876,True
+18504,ENSG00000154723,ATP5J,6386,True
+18505,ENSG00000154727,GABPA,4250,True
+18506,ENSG00000142192,APP,1238,True
+18507,ENSG00000166265,CYYR1,18434,True
+18508,ENSG00000154734,ADAMTS1,11086,True
+18509,ENSG00000154736,ADAMTS5,14020,True
+18510,ENSG00000156239,N6AMT1,10360,True
+18511,ENSG00000198862,LTN1,4164,True
+18512,ENSG00000156253,RWDD2B,11017,True
+18513,ENSG00000156256,USP16,2949,True
+18514,ENSG00000156261,CCT8,2044,True
+18515,ENSG00000156265,MAP3K7CL,3341,True
+18516,ENSG00000156273,BACH1,1972,True
+18517,ENSG00000171189,GRIK1,15290,True
+18518,ENSG00000156282,CLDN17,42606,True
+18519,ENSG00000156284,CLDN8,42602,True
+18520,ENSG00000188694,KRTAP24-1,48712,True
+18521,ENSG00000232263,KRTAP25-1,52314,True
+18522,ENSG00000197683,KRTAP26-1,43722,True
+18523,ENSG00000206107,KRTAP27-1,45533,True
+18524,ENSG00000186980,KRTAP23-1,44059,True
+18525,ENSG00000182816,KRTAP13-2,45825,True
+18526,ENSG00000198390,KRTAP13-1,42520,True
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+18528,ENSG00000186971,KRTAP13-4,45633,True
+18529,ENSG00000186970,KRTAP15-1,53124,True
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+18536,ENSG00000244362,KRTAP19-7,49212,True
+18537,ENSG00000206106,KRTAP22-2,42222,True
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+18569,ENSG00000159110,IFNAR2,10261,True
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+18679,ENSG00000221859,KRTAP10-10,40477,True
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+18681,ENSG00000212933,KRTAP12-4,57075,True
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+18694,ENSG00000173638,SLC19A1,5625,True
+18695,ENSG00000183570,PCBP3,14638,True
+18696,ENSG00000142156,COL6A1,9750,True
+18697,ENSG00000142173,COL6A2,2284,True
+18698,ENSG00000160282,FTCD,15422,True
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+18700,ENSG00000160285,LSS,2966,True
+18701,ENSG00000160294,MCM3AP,1327,True
+18702,ENSG00000182362,YBEY,9578,True
+18703,ENSG00000160298,C21orf58,9707,True
+18704,ENSG00000160299,PCNT,1763,True
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+18706,ENSG00000160305,DIP2A,472,True
+18707,ENSG00000160307,S100B,10564,True
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+18712,ENSG00000172967,XKR3,26307,True
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+18714,ENSG00000177663,IL17RA,504,True
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+18716,ENSG00000069998,HDHD5,5065,True
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+18718,ENSG00000099954,CECR2,18134,True
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+18720,ENSG00000131100,ATP6V1E1,3754,True
+18721,ENSG00000099968,BCL2L13,4891,True
+18722,ENSG00000015475,BID,3819,True
+18723,ENSG00000243156,MICAL3,6579,True
+18724,ENSG00000215193,PEX26,2932,True
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diff --git a/paper-releases/20260928/diffusion/data/inference_inputs/server_1/plans/behcet_c1q_repro_20260921/conditions/samples.csv b/paper-releases/20260928/diffusion/data/inference_inputs/server_1/plans/behcet_c1q_repro_20260921/conditions/samples.csv
new file mode 100644
index 0000000000000000000000000000000000000000..76f254935bfdccbc282bd57e1bef31c535b330da
--- /dev/null
+++ b/paper-releases/20260928/diffusion/data/inference_inputs/server_1/plans/behcet_c1q_repro_20260921/conditions/samples.csv
@@ -0,0 +1,20 @@
+sample_id,gsm,raw_condition,age,sex,group,library_size_on_panel,library_size_in_source_matrix,panel_genes_detected,recipe_k,cells_per_bulk,implied_counts_per_cell
+BDU1,GSM5951808,BD patients,24,male,BD,19763015,20727638,15871,5000,5000,3952.603
+BDU2,GSM5951809,BD patients,30,male,BD,19605913,20603415,15621,5000,5000,3921.1826
+BDU3,GSM5951810,BD patients,25,male,BD,18121684,18994141,15673,5000,5000,3624.3368
+BDV1,GSM5951802,BD patients,46,male,BD,16828529,17613101,15630,5000,5000,3365.7058
+BDV2,GSM5951803,BD patients,24,male,BD,16226749,16965064,16522,5000,5000,3245.3498
+BDV3,GSM5951804,BD patients,42,male,BD,18107067,19186063,15742,5000,5000,3621.4134
+BDV4,GSM5951805,BD patients,31,male,BD,20248524,21237362,15827,5000,5000,4049.7048
+BDV5,GSM5951806,BD patients,58,male,BD,17631560,18462515,15530,5000,5000,3526.312
+BDV6,GSM5951807,BD patients,41,male,BD,18036208,18850500,16043,5000,5000,3607.2416
+HC1,GSM5951811,healthy control,18,male,HC,19817335,20894060,15863,5000,5000,3963.467
+HC10,GSM5951820,healthy control,48,male,HC,22979785,24116436,15851,5000,5000,4595.957
+HC2,GSM5951812,healthy control,47,male,HC,15801845,16600502,15640,5000,5000,3160.369
+HC3,GSM5951813,healthy control,18,male,HC,19033356,20012034,15744,5000,5000,3806.6712
+HC4,GSM5951814,healthy control,53,male,HC,17709796,18569195,15651,5000,5000,3541.9592
+HC5,GSM5951815,healthy control,58,male,HC,20354152,21333610,15695,5000,5000,4070.8304
+HC6,GSM5951816,healthy control,18,male,HC,18524453,19466951,15667,5000,5000,3704.8906
+HC7,GSM5951817,healthy control,41,male,HC,18598477,19667567,16012,5000,5000,3719.6954
+HC8,GSM5951818,healthy control,36,male,HC,20972151,21977378,15892,5000,5000,4194.4302
+HC9,GSM5951819,healthy control,36,male,HC,19489444,20540420,15864,5000,5000,3897.8888
diff --git a/paper-releases/20260928/diffusion/data/inference_inputs/server_1/plans/conditioning_use_20260921/conditions/MANIFEST.json b/paper-releases/20260928/diffusion/data/inference_inputs/server_1/plans/conditioning_use_20260921/conditions/MANIFEST.json
new file mode 100644
index 0000000000000000000000000000000000000000..35ce5c2d51390f5b550e5e309f14654bf38e441e
--- /dev/null
+++ b/paper-releases/20260928/diffusion/data/inference_inputs/server_1/plans/conditioning_use_20260921/conditions/MANIFEST.json
@@ -0,0 +1,135 @@
+{
+  "schema": "pbisc_sdd.conditioning_use.variants.v1",
+  "seed": 20260921,
+  "source_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/artifacts/gse135779_scsemi_split_target42_20260913/donor_conditions.npz",
+  "source_sha256": "a5b2f51132f19e98917f9d53ee05e86dc22322e497d9701dec1ac1eec24df628",
+  "donors": 42,
+  "labels": {
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+    "SLE": 30
+  },
+  "untouched_keys": [
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+    "output_availability_mask",
+    "recipe_k",
+    "cells_per_bulk",
+    "sample_ids",
+    "gene_ids",
+    "gene_symbols",
+    "donor_ids",
+    "raw_conditions",
+    "conditions",
+    "donor_n_cells"
+  ],
+  "variants": [
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+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/conditioning_use_20260921/conditions/donor_conditions_condmean.npz",
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+    }
+  ]
+}