diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/cv1/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/cv1/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e52e2032a16c79ccce64c632dfc133eccc9fefc3
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/cv1/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
@@ -0,0 +1,6 @@
+B cell	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+DC	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+Monocyte	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+NK cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2
+Other	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2
+T cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/cv1/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/cv1/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6af66f30eb86fcfc30aa798f58a78b0a12643394
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/cv1/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt
@@ -0,0 +1,2477 @@
+GeneSymbol	B cell	DC	Monocyte	NK cell	Other	T cell
+ENSG00000002587	27.02629916171759561	26.54466473008523408	2.04876536737013248	2.10950927547456279	0.29566109052772238	0.60739256346473014
+ENSG00000002933	0.00000000000000000	16.00345544763966998	152.27568665966154526	0.00000000000000000	8.97158695020498875	0.41367596918914795
+ENSG00000003249	6.23248036903491798	0.00000000000000000	1.96170283575632753	0.27280935592552669	0.00000000000000000	2.32148123931104422
+ENSG00000003436	46.32079110485387474	0.00000000000000000	11.83279154277573220	15.58401124100794810	80.64833850709467811	1.95645077329091022
+ENSG00000004468	26.19596204463064737	56.58118345304883690	24.77198800763189368	187.04810253220085769	0.00000000000000000	15.27331758953994800
+ENSG00000004799	12.73102416709643947	0.00000000000000000	45.73999279736626278	3.92550121247133577	1.16250346512838476	0.83796650495087721
+ENSG00000004838	0.00000000000000000	0.00000000000000000	0.00000000000000000	4.34420991273005530	0.00000000000000000	0.30125011416128383
+ENSG00000004939	54.91722498905369321	0.00000000000000000	45.77224647390374912	0.00000000000000000	506.30384960200922251	17.43499989633505365
+ENSG00000005073	0.00000000000000000	7.73850395965238835	0.00000000000000000	0.82092572350043114	0.00000000000000000	0.00250482308399487
+ENSG00000005102	1.27878349138253955	0.00000000000000000	0.12015744993340163	0.00000000000000000	0.00000000000000000	3.39915057837603429
+ENSG00000005187	62.80076510371315379	11.09190967933079364	0.96872026962193059	0.00000000000000000	14.08691033764808509	4.95464841914352050
+ENSG00000005243	3.87434903213633053	6.32814651568694675	0.00000000000000000	5.86420830591048947	0.72461170123424590	0.00000000000000000
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+ENSG00000007062	4.08636356912455234	5.88371574333563618	0.00000000000000000	0.00000000000000000	3.64736304479619466	0.00000000000000000
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+ENSG00000027075	135.64800189442308920	252.05312833799354166	23.41541768534786883	165.18641019238339140	0.00000000000000000	135.78798190132320656
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+ENSG00000285043	4.86521570917862523	1.46462454139335030	0.00648666677787525	0.00000000000000000	4.57020528849915841	0.00000000000000000
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/cv2/out_fractions/CIBERSORTx_Adjusted.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/cv2/out_fractions/CIBERSORTx_Adjusted.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ba29760eb53ff5a5c2f561f45826f1570e22ef6a
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/cv2/out_fractions/CIBERSORTx_Adjusted.txt
@@ -0,0 +1,7 @@
+Mixture	B cell	DC	Monocyte	NK cell	Other	T cell	P-value	Correlation	RMSE
+N055_AC	0.04047010745912693	0.00000000000000000	0.23192556388445629	0.07196286894257665	0.41458821624683562	0.24105324346700457	9999.00000000000000000	0.46546552221485593	1.04464502668054915
+N150_BC	0.00502295507784293	0.02712370689837622	0.11355102902801578	0.07369370840146033	0.31718432664957502	0.46342427394472968	9999.00000000000000000	0.51737442995023575	0.89773796839703557
+N001_TOL	0.00000000000000000	0.06419504745321886	0.10073153873933659	0.02286206373982476	0.48135779492494685	0.33085355514267306	9999.00000000000000000	0.72650403041289335	0.80604698859459445
+N001_FU1	0.00000000000000000	0.00000000000000000	0.16072883729013035	0.03904948565867863	0.55494086495386163	0.24528081209732949	9999.00000000000000000	0.74920252873624704	0.87536357328351533
+N002_TOL	0.00000000000000000	0.08873044536047774	0.16233325923777303	0.02508645139228382	0.27075489330206787	0.45309495070739758	9999.00000000000000000	0.56875412942387793	0.83097852702104780
+N002_FU1	0.00000000000000000	0.12431731363076055	0.12037658522716320	0.04483825257386366	0.47725193863812737	0.23321590993008531	9999.00000000000000000	0.68547925548919564	0.85811874872383065
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/cv2/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/cv2/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a907d008df51418ffe2fa9a0a9e5df2d48391b75
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/cv2/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
@@ -0,0 +1,2465 @@
+NAME	B cell	DC	Monocyte	NK cell	Other	T cell
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+ENSG00000003249	25.55707182249736320	2.22622282355741730	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000
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+ENSG00000004468	56.77046157462643095	19.87654057471517888	23.77012582774349170	176.52996442467329530	18.61208445299363490	13.73483987759345482
+ENSG00000004799	2.16387337057728235	4.27201790277321258	16.19017313041884165	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000004939	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	53.97806627915585409	1.00000000000000000
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+ENSG00000005243	1.00000000000000000	1.00000000000000000	3.16013041979222020	25.84876721333935379	2.38696255201109242	9.84393587374129631
+ENSG00000005249	21.83648720015284184	57.73195788680651219	49.16981733450148084	18.35734432631809554	2362.78902983396574200	5.21267524180800645
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+ENSG00000005471	31.20811524846543250	4.63414681503609316	8.22543352601160827	1.00000000000000000	1.00000000000000000	1.00000000000000000
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+ENSG00000005961	6.14181085140995275	4.94907195385873333	10.34795685537016929	8.08098313753445829	1501.17811759236906255	4.60750360750359356
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+ENSG00000007237	11.25165726018490631	112.66827705856452724	257.81722207698192051	45.05460331382246153	5.68040095533863099	5.27512717637621975
+ENSG00000007264	1.77893752921015369	10.11274330303208302	3.33909747113648780	323.81911448155710787	25.49617982394692461	44.65088935377025336
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+ENSG00000008283	1.68671885729982085	2.62764986970904424	8.59559367561831422	5.29203904200298503	6.13589346240264089	20.22804262517569640
+ENSG00000008394	1.00000000000000000	52.35879351096854606	64.32658191415720239	1.00000000000000000	15.08820593594520787	1.00000000000000000
+ENSG00000008517	42.04862245302228274	79.91400924126568839	81.64445312802558874	945.62494428366596821	393.52894572229462256	1860.06305956399455681
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+ENSG00000011105	1.00000000000000000	2.10963160230803082	2.11234705228031761	2.08483402039487764	45.85805977776370668	1.00000000000000000
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+ENSG00000013375	8.50004229603809058	4.67012514497272502	4.63884025629640995	1.71113639596074618	1.95840521372436216	22.54457078591605068
+ENSG00000013725	13.05142131859019905	11.19639448594353581	7.50691810598204334	58.74011338043864328	61.32719093749699368	202.26702441022325729
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