diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/fewshot2/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/fewshot2/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e364528adaa4eb0a4198000fb375bbf26a052df3
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/fewshot2/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
@@ -0,0 +1,2378 @@
+NAME	B cell	DC	Monocyte	NK cell	Other	T cell
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+ENSG00000253250	1.00000000000000000	1.00000000000000000	1.00000000000000000	3.02593192868718885	17.73930742273715566	1.00000000000000000
+ENSG00000253305	1.00000000000000000	1.00000000000000000	1.00000000000000000	12.08995671254179705	3.69251480883145211	3.73224043715846543
+ENSG00000253368	1.00000000000000000	5.39610499441123803	9.58846137435046764	1.00000000000000000	1.00000000000000000	1.00000000000000000
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+ENSG00000254126	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	5.58484944956881701
+ENSG00000254415	4.41530054644810210	16.58637292408801400	41.73418918849405657	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000254470	8.13235916259961655	13.37171728747247990	77.10805083024554563	21.72939982694962069	9.94604244370517598	9.86618796381024410
+ENSG00000254709	187.32337909583461055	2.06860440265014356	2.58730158730158522	3.51382604323779191	3.50878073256399237	7.47878521946093056
+ENSG00000255150	6.36535690985037128	1.44420753375976973	1.00000000000000000	11.84446102557883762	3.84414106939705613	24.16647183342137595
+ENSG00000255398	1.00000000000000000	10.89311937649903861	19.18489579379933829	1.00000000000000000	1.00000000000000000	1.00000000000000000
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+ENSG00000256235	2.82548375319460465	54.40594313468442778	25.71987238217545624	10.57095544523745190	346.75925795950854535	7.80297352066960315
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+ENSG00000256771	19.44729386431910356	6.59473317905887324	2.78126113288208465	29.09361923436104291	10.12506597731271718	4.78626473038698474
+ENSG00000257017	1.00000000000000000	1.59290881062492229	8.48539173731649399	2.93050193050191865	1.00000000000000000	1.00000000000000000
+ENSG00000257093	64.99226600074194948	5.39183979788246415	6.44190760542722263	28.91938231101081769	28.16688206051049903	25.30976912763321351
+ENSG00000258405	5.62962962962962976	2.21200279076459161	1.00000000000000000	19.61465411755356314	5.57731274545278666	4.40318820936658550
+ENSG00000259207	2.80766449746927815	1.00000000000000000	1.00000000000000000	2.84979652238253989	140.85920576630493883	3.59740259740258717
+ENSG00000259330	5.27219877064358045	14.99804962711143652	20.28314659133412334	2.68010752688171516	231.64769100981735050	14.34117123178490161
+ENSG00000260001	1.00000000000000000	1.00000000000000000	1.00000000000000000	3.43902439024388729	1.39503831871691752	6.39896719038593176
+ENSG00000263961	36.47585025054720376	32.28281197875605812	1.00000000000000000	1.00000000000000000	28.10030798455279921	1.00000000000000000
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+ENSG00000266412	52.72547598527459911	136.83378347101904637	148.15257695919174807	79.06493687983764573	1252.65881614407385314	60.15727974245977805
+ENSG00000267508	1.00000000000000000	1.00000000000000000	1.00000000000000000	7.28930582511201930	1.32690421706440254	1.00000000000000000
+ENSG00000268041	5.10317664278616601	1.00000000000000000	1.00000000000000000	3.56278831368527049	1.00000000000000000	1.00000000000000000
+ENSG00000269404	51.13404831002604567	44.94924331110172488	5.76644423260247319	2.49880095923260459	1.00000000000000000	1.00000000000000000
+ENSG00000271503	84.84929910845109191	43.87404301485748448	92.29848753168522535	2515.61634773986725122	1986.56906768694875609	2632.68315469118761030
+ENSG00000271605	14.29347861932536645	32.66024108038608631	27.59549738198259305	1.00000000000000000	6.43074561545062107	5.71698113207548531
+ENSG00000272398	147.31243908374523244	1.00000000000000000	1.00000000000000000	1.00000000000000000	4.57653791130187759	1.00000000000000000
+ENSG00000272602	20.65732497721291594	2.43307537976498178	1.47290267662915131	30.96152092069672079	8.12902710598990907	6.72808569456213146
+ENSG00000272617	1.00000000000000000	2.13713895838071899	5.13581837950573394	12.78498554626310835	3.59875259875261211	1.00000000000000000
+ENSG00000273749	7.81972925322569345	57.20820267630687539	39.73272704420298140	2.37703112090332791	31.74324341497073831	5.36302827607177779
+ENSG00000273802	4.03951367781154413	4.48403231186685147	1.00000000000000000	8.09734311884844082	45.12598875472495052	1.00000000000000000
+ENSG00000273983	11.83099431280875535	1.00000000000000000	1.00000000000000000	3.40847784200383463	7.48202424787482201	3.76548672566370612
+ENSG00000274349	6.32534793362649683	1.00000000000000000	1.00000000000000000	4.15457413249210195	1.81539465101109032	9.64573274727676200
+ENSG00000274588	1.00000000000000000	1.00000000000000000	1.00000000000000000	12.62933671582824324	1.00000000000000000	3.78241513633833071
+ENSG00000274641	3.09643605870022398	5.17125052002195762	1.00000000000000000	3.56673511293633494	57.88141364665792565	1.00000000000000000
+ENSG00000275023	70.59099194896650431	17.23997821440036660	21.72825433975490483	170.60645361957861610	29.64237923868061841	110.67840330363564760
+ENSG00000275302	10.61032487025387638	30.56680745246187669	132.06023650496081245	667.56253914473370514	13.94316821215109670	245.12074037558772943
+ENSG00000275342	29.22666271738207655	7.75493346510025905	4.61794500723590051	10.55806206597813457	2.59897665494084595	6.02782153821294031
+ENSG00000275385	1.00000000000000000	1.00000000000000000	1.00000000000000000	4.18268618714193785	1.00000000000000000	1.00000000000000000
+ENSG00000275713	5.56654459983214966	4.55308269691127876	2.28040973111394329	6.49990692912650925	145.99495206754338028	1.00000000000000000
+ENSG00000275832	1.00000000000000000	1.00000000000000000	1.00000000000000000	6.82072176949939557	6.29100529100532402	1.00000000000000000
+ENSG00000276070	1.00000000000000000	20.49507398210988285	61.66122422903310962	18.83451110705984277	4.13283208020051696	18.91053049486966131
+ENSG00000276085	1.00000000000000000	10.43142910138362289	52.32342808494767894	3.79485746226940313	5.16840350145896377	11.57131841052069809
+ENSG00000276644	1.00000000000000000	13.12144846307289114	1.00000000000000000	5.26985482493591917	5.95844554895683221	1.00000000000000000
+ENSG00000277075	5.70543608964648286	9.39255040998748569	3.82485875706215639	16.08693061669721303	91.15338856110494703	12.43468748135878066
+ENSG00000277443	303.05942265121865375	111.92481980085086946	480.36484140261205766	21.69323181163370506	30.17323787242732891	5.15627597672487159
+ENSG00000277586	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	5.75189935147238884	15.90022864189551477
+ENSG00000277632	1.00000000000000000	50.96404707444816040	207.95352212378841728	152.18819333035750674	10.05404193117719203	29.21151820628826101
+ENSG00000278828	23.39544895351010823	10.12023249415195281	12.30989601220342955	25.52885493286618157	925.40067232877845527	8.32775916784120973
+ENSG00000280969	5.62962962962966085	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000283632	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	26.33558335243544590	1.00000000000000000
+ENSG00000284691	44.62396564276188116	8.09309017315316304	2.60095398754294482	15.03720862555259785	11.32362731730661132	31.57771248014669396
+ENSG00000284773	9.15254059084535676	1.00000000000000000	7.00603459354297264	1.00000000000000000	1.66764588062492125	2.75438596491227816
+ENSG00000284976	6.43342836984665301	3.15331185462903507	5.61646998055140401	3.40038406144981753	51.03762291848527610	1.00000000000000000
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/fewshot2/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/fewshot2/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e52e2032a16c79ccce64c632dfc133eccc9fefc3
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/fewshot2/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
@@ -0,0 +1,6 @@
+B cell	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+DC	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+Monocyte	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+NK cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2
+Other	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2
+T cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/fewshot2/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/fewshot2/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ec4371218cc7dc8b637363e4c989e64f1f0d0930
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/fewshot2/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt
@@ -0,0 +1,2378 @@
+GeneSymbol	B cell	DC	Monocyte	NK cell	Other	T cell
+ENSG00000000971	0.10924709297950558	0.17916354332936932	2.09869239540525676	2.77328929325393814	17.76408240080687051	21.48207342094981342
+ENSG00000002587	6.50659149797715308	2.51146660784977049	0.00000000000000000	0.00000000000000000	0.00682809744425403	0.00000000000000000
+ENSG00000002933	0.24927646705584786	7.71980744616741799	111.10355075001052683	8.40354400473830765	5.42886819060795744	1.09809919302866299
+ENSG00000003249	9.39471414473348609	1.68377500002102143	0.11264054334755581	0.00000000000000000	0.00000000000000000	0.65544941383729138
+ENSG00000003436	0.30089336246464832	3.56091528748165942	0.30728593591924080	0.37681496327146802	26.07895902872887461	0.36266421187168363
+ENSG00000004468	125.05732818734685452	25.59811840031893126	12.20848820098158782	205.46590881875667378	28.35798264521896783	6.01336241505550451
+ENSG00000004799	3.25497505029899026	31.39084898095562792	117.22406784821900771	4.31205887902235308	5.43081248835666042	2.26732257103015611
+ENSG00000004939	1.50448372400927233	14.05842957124206549	13.12357782645664805	0.00000000000000000	507.96577189313023837	4.30640796119962754
+ENSG00000005243	2.32772327623804909	1.27121455021700136	2.07501320026059144	7.71270282218876968	0.93366814214363292	3.11682248486798485
+ENSG00000005249	26.78756723485382452	39.13341601382140311	31.03147392734442533	23.21949723631274765	677.11903495252761331	28.56374308811957619
+ENSG00000005379	16.31453220012206629	35.12489536654216948	17.51431561921421931	139.01419456218039272	17.54361263766617895	34.84535184569068633
+ENSG00000005469	8.91687631562956184	5.38021486369782309	1.78266785554248841	17.54014644029347281	7.54396144899160959	18.77218898536524350
+ENSG00000005513	0.00000000000000000	0.37000102484077069	0.10460893096253675	0.15464019227354989	0.00000000000000000	4.16223095461827519
+ENSG00000005884	8.27084827874090855	1.10542034817124590	0.85896980236200093	0.83506916288238542	0.71935377113942656	3.18503253727043889
+ENSG00000005961	25.68875221605049575	11.23719787996990860	14.68297716856296020	20.25345675852173599	577.90281273774530746	18.57234871626418027
+ENSG00000006432	19.43946841042666307	1.77162352083686958	0.25173464844266019	2.88621158442194270	1.27347110411226572	3.86758167118800555
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+ENSG00000006534	9.02544177856048435	60.55276124261636994	144.32133498355062784	17.66951675058240667	31.01687662559095315	7.92720934908005503
+ENSG00000006555	4.34296698102904877	0.57106738153658043	0.80160688379889411	18.18489855043701553	4.61047174372021473	12.08616454419389008
+ENSG00000006607	58.39939413422914072	24.28904365801180631	27.37478921651279506	16.87614692899133217	4.96202610563099533	9.72742964781108910
+ENSG00000006638	1.10343979009527460	0.77426159845949272	0.74017153977076011	0.99917568753486574	39.82865418009035352	1.82831067177830997
+ENSG00000007062	0.00000000000000000	0.00000000000000000	0.00000000000000000	0.04924413450658391	7.60347687810957051	0.00000000000000000
+ENSG00000007237	46.47182325734199537	112.54707886715929988	236.99065087318723499	98.74814351551755465	33.10469017382419565	41.94610771101329050
+ENSG00000007264	12.69251161893148350	12.97416371046850081	12.34555790602030179	256.58494836621372315	43.88369983835486465	101.26376256340776649
+ENSG00000007312	145.55496436080161970	8.62784790018209335	12.06062238849426294	15.03973982974610735	6.20802650485825236	8.35191905581202576
+ENSG00000007350	1.04180548906932868	0.05867177063542107	0.96812213399921809	32.20166064963125763	3.37159806157088582	3.21310480480302152
+ENSG00000007402	1.76504152317670160	2.07953128732810111	3.92827926704485719	47.08518831457416098	4.14458535480681611	19.97374698709024798
+ENSG00000007516	42.74302062345179820	2.81043202278776239	1.28083167378557983	4.32017908435635967	2.61033014037751165	3.78903637027781270
+ENSG00000007545	6.62039813964430746	3.01982936800648272	5.93479537932155843	17.27062905069055532	6.30371426253270428	3.74241900268416261
+ENSG00000008277	1.06131709546294650	0.00000000000000000	0.29836525175460932	4.02012228432271801	5.08259259962250809	10.07148433810825772
+ENSG00000008394	3.24398207292409335	33.24905602281855010	71.49531950910268563	3.99438331514040401	17.52257701093450848	3.79345466482878679
+ENSG00000008405	12.00994270269747766	12.41103461724339319	6.58077407871841746	74.81836714197469007	19.62703007526230081	50.65234627257198952
+ENSG00000008441	7.59602372639120560	4.85191317388626775	15.54454736774093959	0.17795626336456388	54.47415225865901789	3.16338974110741855
+ENSG00000008517	57.35347699137700062	66.92221816425850989	59.21236529237847890	328.14508401793909798	171.38165915926583693	1306.64161339225984193
+ENSG00000008853	32.46982418609169940	7.39146010964916123	1.97317871197482142	8.55750471234101795	4.33644158848723382	8.91949998384742315
+ENSG00000010278	12.41951796433531463	9.26640701693597180	9.82462303345011456	6.88946828586374771	181.81737414109710471	9.41116234634492699
+ENSG00000010310	0.79845033603736859	13.47524550904056184	0.58130055702206795	5.50490615475565903	0.91067869646546573	7.19387737369794866
+ENSG00000010327	19.69917032264046597	53.85395188194963367	395.86951704489592885	22.06616091805601343	44.14796410143499372	20.25464795997574186
+ENSG00000010610	32.96852643431315499	288.19664327497173417	239.32026351554495136	42.29386105453995270	28.91010516127290586	158.70782445207149181
+ENSG00000010671	140.26443440332798218	67.19633976114270979	94.09176587622340548	17.22672849293406827	160.59565811900637300	9.75503336465840576
+ENSG00000011105	0.82429287801830464	1.59005289618110224	1.14607169765364514	1.23317480662713952	39.48944355518062821	1.05197659726112303
+ENSG00000011422	22.79044484488175826	247.21440426509462895	266.16614888824085483	20.36170760689726222	40.98109627601927940	25.55723046147755184
+ENSG00000011590	15.99391066986246202	0.42095942477018705	0.56062995174566932	0.38524106292472055	1.09554077144757400	2.48350786116621514
+ENSG00000011600	117.67033683286275902	708.78669007528526436	1396.17888535959491492	733.40151799617865436	144.02610543332957604	119.30712079224421984
+ENSG00000012124	241.31372356419646508	9.36106585572805905	5.65509963178787167	7.18697464255004981	15.26790121264366107	4.32602967848505582
+ENSG00000012232	18.59692038729628294	18.38464050509443126	31.25625042898412431	52.85444366589302234	14.16651446916333157	18.13836294454031517
+ENSG00000012779	333.63542313721870869	164.89869479645648198	407.82947245465300057	41.27039964540080064	52.38151041225972904	54.32899704950354902
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diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/fewshot2/out_hires/fractions_results.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/fewshot2/out_hires/fractions_results.txt
new file mode 100644
index 0000000000000000000000000000000000000000..75445e6e062b0a4f14bbce10c253624caf22e6d5
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/fewshot2/out_hires/fractions_results.txt
@@ -0,0 +1,143 @@
+Mixture	B cell	DC	Monocyte	NK cell	Other	T cell
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