diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv4/out_fractions/CIBERSORTx_Adjusted.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv4/out_fractions/CIBERSORTx_Adjusted.txt
new file mode 100644
index 0000000000000000000000000000000000000000..fed778f5ed63a26353a0e3c6059162c51f7ec804
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv4/out_fractions/CIBERSORTx_Adjusted.txt
@@ -0,0 +1,33 @@
+Mixture	B cell	DC	Monocyte	NK cell	Other	T cell	P-value	Correlation	RMSE
+C20_1004	0.18670331545505384	0.02059151153852275	0.55460781250214020	0.07110864923220589	0.03484917738679378	0.13213953388528360	9999.00000000000000000	0.83526887318977971	0.60681387796765263
+C20_1404	0.17245590863131086	0.00000000000000000	0.46348937059724626	0.20375069015515926	0.02921214258755220	0.13109188802873137	9999.00000000000000000	0.82238822328282779	0.58338278147766609
+C36_1504	0.00000000000000000	0.06887602014215168	0.35380879286490891	0.00000000000000000	0.03770364754311195	0.53961153944982743	9999.00000000000000000	0.87897684348724192	0.49093173989151156
+C36_1704	0.05424299733808552	0.05598378991512699	0.25009598078263645	0.00000000000000000	0.05279184033854924	0.58688539162560183	9999.00000000000000000	0.87647902947555967	0.54773236825171645
+C36_2104	0.03917698928763604	0.12700039060109819	0.24133526763361657	0.00000000000000000	0.04444040016540703	0.54804695231224210	9999.00000000000000000	0.80706874460640243	0.61027973737368812
+C40_1504	0.10238471195795132	0.04753132972279973	0.38570050174006459	0.03933227188015519	0.05180712788869193	0.37324405681033734	9999.00000000000000000	0.86467896945018818	0.50409680375668253
+C40_2204	0.02381281740665902	0.04720701798836274	0.29277003187792988	0.09485771253648181	0.08564316390097733	0.45570925628958914	9999.00000000000000000	0.82353667830854427	0.58573355507424452
+C40_0105	0.08391097534668243	0.02511541192271551	0.47620191305351817	0.02903832339804408	0.07173208485252974	0.31400129142651001	9999.00000000000000000	0.85089258578965266	0.53363551947983212
+C58_1604	0.00000000000000000	0.07030152744765734	0.34143892889260680	0.18051266046264289	0.04937530995209102	0.35837157324500202	9999.00000000000000000	0.88485987361164420	0.47954016695105206
+C58_2501	0.00153303848292489	0.03919299163774727	0.50881066702254152	0.04866232857219165	0.09049933478944235	0.31130163949515216	9999.00000000000000000	0.80462770965750352	0.62186513453095815
+C58_2901	0.00000000000000000	0.10672838786919098	0.32521805210611987	0.04268054718511048	0.13800241106073749	0.38737060177884119	9999.00000000000000000	0.72775616642510288	0.68643070098144432
+C58_0102	0.00000000000000000	0.15281599142649463	0.25988538836407776	0.03710983723137164	0.05996965285286317	0.49021913012519280	9999.00000000000000000	0.80621815960080390	0.60219504953986713
+C58_0402	0.00000000000000000	0.10930757962242117	0.24976749252316280	0.10974457620559114	0.06521326276057976	0.46596708888824517	9999.00000000000000000	0.83710068374833202	0.57581957765768099
+C58_1003	0.00604224312228043	0.14565964179858801	0.31018770913489890	0.04029513082684512	0.04427419646660229	0.45354107865078536	9999.00000000000000000	0.87562883493717625	0.49615720334199187
+C82_2504	0.02406075538356339	0.00000000000000000	0.41564700993667869	0.00000000000000000	0.03996433815455103	0.52032789652520695	9999.00000000000000000	0.81088595146745512	0.58521747603119922
+C93_2104	0.01330765864646033	0.14528441551092780	0.47495260723114613	0.13016245433844353	0.00606215003048773	0.23023071424253450	9999.00000000000000000	0.86936125411433818	0.51895754146422646
+C93_2704	0.00000000000000000	0.14480583369768846	0.36537385744506390	0.15147829275888680	0.08071523801889514	0.25762677807946571	9999.00000000000000000	0.84886720335016419	0.52931429818147802
+C93_0405	0.00000000000000000	0.16805357865289139	0.28060550778379834	0.12955065482566500	0.04007720287802188	0.38171305585962340	9999.00000000000000000	0.87008303383596863	0.50770783796794705
+C142_3004	0.08859565655507298	0.13406088604865951	0.15103807694105381	0.16992097419538232	0.01604731559789976	0.44033709066193166	9999.00000000000000000	0.82967708160510945	0.61065179251346313
+C169_1205	0.01754838051294186	0.13876003104570975	0.24821011012062008	0.11450057314452149	0.09566920702973294	0.38531169814647387	9999.00000000000000000	0.83711005301929065	0.56811530865857740
+C169_2001	0.05825978781582557	0.04935552804255543	0.26595876690806225	0.09234411763370942	0.03586677231328510	0.49821502728656220	9999.00000000000000000	0.81883705656417027	0.59901532576572225
+C169_2301	0.06228150772182644	0.04292906051859283	0.20696624350866821	0.28010589592406909	0.04348048049014324	0.36423681183670015	9999.00000000000000000	0.87130642665485669	0.56039191102373409
+C169_0202	0.06842023869606761	0.08721285681506984	0.14837764788983998	0.17584406008389278	0.08671325839381487	0.43343193812131492	9999.00000000000000000	0.83666277924344912	0.62420579023072187
+C169_0403	0.05325286695637012	0.06217587914420484	0.11208259843007530	0.14201394802704589	0.17618399883543848	0.45429070860686532	9999.00000000000000000	0.80495769158700958	0.68250439457864021
+C187_2605	0.02551352883893031	0.03641409715756611	0.37804315975414859	0.17283441698216204	0.07879167342651970	0.30840312384067320	9999.00000000000000000	0.82769786468781148	0.56185027347892180
+C187_1201	0.02767256791224161	0.00000000000000000	0.61848672967210327	0.17388407757293436	0.04841567574047041	0.13154094910225039	9999.00000000000000000	0.81302321533701849	0.67455671487203150
+C187_1401	0.02375465046846295	0.00000000000000000	0.62597404917504729	0.15952311200685496	0.05577314691809200	0.13497504143154276	9999.00000000000000000	0.81174516674885289	0.68149509661063346
+C187_1901	0.05591054660814652	0.02705816335612483	0.54625602480668511	0.15171433848608784	0.12071409645860853	0.09834683028434707	9999.00000000000000000	0.85293192870962065	0.56462236006352295
+C187_2301	0.03976401371090757	0.00688661680899636	0.49794709918013463	0.14871160600307404	0.11009386256081329	0.19659680173607413	9999.00000000000000000	0.82426012055275188	0.58557783765739102
+C187_2502	0.02178012377730556	0.10403801567094552	0.35802786325700181	0.06301335759923900	0.12554841400874420	0.32759222568676383	9999.00000000000000000	0.83845721842480103	0.54589484944593680
+C214_2705	0.04081287129763430	0.11175019398201819	0.21866016414096393	0.00000000000000000	0.05990029472652413	0.56887647585285950	9999.00000000000000000	0.82056666650258403	0.60917521140673225
+C234_2805	0.00937267129749681	0.12650591095515595	0.25718411935023755	0.06830096872322571	0.04659824832950671	0.49203808134437738	9999.00000000000000000	0.82164716925310655	0.58822799734149023
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv4/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv4/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0797ad0d2ea239ab77af407274fe3b3f0c270809
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv4/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
@@ -0,0 +1,2340 @@
+NAME	B cell	DC	Monocyte	NK cell	Other	T cell
+ENSG00000000971	1.00000000000000000	1.00000000000000000	3.11245926214866797	2.63719711853306960	11.66203004145319255	12.18291709111908183
+ENSG00000001561	10.69208813076714470	20.10977033719823481	4.23559937275109366	56.10196335770739040	8.07120771418168914	23.32211649036938184
+ENSG00000002587	20.65568900330170621	13.40033461967850847	2.78052021870507327	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000002933	1.00000000000000000	14.23170834593719292	83.17206815716689050	1.00000000000000000	4.74953268134317241	1.00000000000000000
+ENSG00000003249	32.91735384566248257	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	2.48323939483832490
+ENSG00000003436	1.00000000000000000	5.00886217535348788	1.00000000000000000	1.00000000000000000	92.97853898467519684	1.00000000000000000
+ENSG00000004468	87.52956362418380820	34.62848659716389221	11.21581749873847045	143.65313654598068638	17.41682000845663936	17.99444116895670831
+ENSG00000004799	1.00000000000000000	18.77996739360904499	65.62173668843308860	2.93798449612402646	4.62844702467342906	1.00000000000000000
+ENSG00000004939	1.00000000000000000	1.73260073260073311	1.00000000000000000	1.00000000000000000	252.25919861857477144	1.00000000000000000
+ENSG00000005243	7.61159875237804151	3.32356194978164243	3.19979070797573106	24.52884688559966264	5.82625482625481084	2.71232876712328164
+ENSG00000005249	7.36115927669062842	45.68504995707350957	21.70709061692885555	5.49612957434255733	1668.20544212090953806	3.28832951945079799
+ENSG00000005379	3.02922077922077371	8.01110629492111848	6.72381265057433097	44.63720568095886421	4.91507424682701899	4.65413505616030854
+ENSG00000005469	5.11227948365145135	5.15753678748829447	6.97350365088082125	25.13166714863668361	4.27113124956810797	7.39732126566541837
+ENSG00000005471	20.30982252575199354	5.87943412300779311	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000005844	39.24603486666742924	50.32398883899433883	100.51800743553593520	278.62450275275944023	23.59464297961722679	133.15834713781009668
+ENSG00000005961	3.63157894736842657	5.86564682234728618	1.00000000000000000	1.00000000000000000	755.94959129911148921	7.49614243134861624
+ENSG00000006530	17.86877379348482719	10.78028623041693912	11.72032919220361258	69.86550097875340271	5.12241707028161120	27.96159019017150982
+ENSG00000006534	1.00000000000000000	32.08879170108523482	79.63349788007965913	4.13479623824450560	2.06951367128983410	1.00000000000000000
+ENSG00000006555	1.53908355795148077	1.00000000000000000	1.00000000000000000	13.61967191376323072	1.43975373790677108	8.08894792281150465
+ENSG00000006638	3.49875062468764586	1.00000000000000000	1.00000000000000000	6.89124947627659346	168.21733644134141628	2.31613582521715777
+ENSG00000007062	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	15.51398126431572067	1.00000000000000000
+ENSG00000007237	9.36425670786744035	66.44668225061180067	131.42210779347846028	33.94896198634572215	9.33807420633063856	7.97524970346004380
+ENSG00000007264	3.25022502250225820	4.41009500927694020	2.18147448015123002	383.31500057692625205	24.50615618071210022	91.04157522534072200
+ENSG00000007312	739.28524956392107015	12.73845247903581424	39.45692454665946514	34.62093147126764592	10.88478741436325237	31.57689887817665308
+ENSG00000007350	1.00000000000000000	1.00000000000000000	1.00000000000000000	56.66034459376427179	1.00000000000000000	5.87750616577024587
+ENSG00000007402	1.00000000000000000	1.00000000000000000	1.00000000000000000	23.24817302314949785	1.00000000000000000	8.93466172051560292
+ENSG00000007516	17.40791001809492045	1.00000000000000000	1.00000000000000000	10.19841337005571624	8.04841104032041343	3.02839756592292053
+ENSG00000008277	1.00000000000000000	1.00000000000000000	1.00000000000000000	8.52406435895420245	1.00000000000000000	7.18221942882690456
+ENSG00000008282	148.49475724482746841	41.80337387273866767	43.27394674936180508	9.47228843790555608	80.99130931800701205	43.50628279753502881
+ENSG00000008394	1.00000000000000000	48.54333067911115052	94.33897817589432577	1.00000000000000000	15.12992508058330188	1.00000000000000000
+ENSG00000008441	4.95875480928020451	3.96914827160208983	9.00194657128864506	5.54709495608482417	72.29282605830795205	7.30148626579513405
+ENSG00000008517	16.66099623383997752	13.93392999613973515	18.33395640037424101	1284.10289606287301467	253.68741359146355308	2280.13336774451772726
+ENSG00000009694	1.00000000000000000	1.00000000000000000	1.00000000000000000	5.47049295410841285	1.00000000000000000	8.14970427934473918
+ENSG00000010278	14.91146478231483741	7.05823804428537471	22.16933654168111900	3.32386231889125350	368.29177965693747865	1.00000000000000000
+ENSG00000010327	1.00000000000000000	18.64644878362806324	95.07308023443567890	5.76644423260246430	4.56807722170732511	1.00000000000000000
+ENSG00000010610	2.76616036736135129	171.59572050686600164	130.87047916127875169	5.59783881613966550	18.73273759753107015	73.20367228552704830
+ENSG00000010671	125.98197867081330514	57.03041529292816847	65.74990699861035637	3.57069408740359284	120.66691187625337989	1.00000000000000000
+ENSG00000011105	1.00000000000000000	1.00000000000000000	3.44379276637341425	1.00000000000000000	73.17773591270855604	1.00000000000000000
+ENSG00000011422	6.09859272082639770	212.91639830180983495	246.20290686604764119	4.42485172206535360	9.30177990188007264	3.72914557318032625
+ENSG00000011478	5.19307694693212163	3.64886209565301023	1.00000000000000000	4.77118035266544638	1.89902551254490048	9.87158058074649603
+ENSG00000011590	10.72608162783181740	1.00000000000000000	1.00000000000000000	2.79791441927364026	1.77930174563590970	1.00000000000000000
+ENSG00000011600	23.11501739262710586	1909.70678306081481423	4334.06497927364762290	2036.61120288206939222	160.21732559379586291	100.12816757163579950
+ENSG00000012124	273.33668705309088409	8.24233053643929381	3.43309002433089550	1.00000000000000000	5.11861614497527384	1.00000000000000000
+ENSG00000012779	153.09026929652674198	68.91484838427810189	145.14436899164755346	1.00000000000000000	11.03399773536451711	5.57143786617286896
+ENSG00000013016	7.23615471008612143	1.74783128926114451	1.00000000000000000	3.58665287118468123	157.43319731452226051	1.00000000000000000
+ENSG00000013725	6.14140608746464256	1.43448036148766112	1.00000000000000000	57.71449282333524877	17.61467669626989974	207.35275566010096782
+ENSG00000014257	1.00000000000000000	22.25544408073943714	15.78737272973062389	3.09995800083997786	1.00000000000000000	1.00000000000000000
+ENSG00000014914	1.00000000000000000	23.61032132524358929	45.95899086750647200	4.74531835205992003	1.00000000000000000	1.00000000000000000
+ENSG00000017427	6.62830555706945113	1.54567281458037797	1.00000000000000000	1.00000000000000000	1.67285695061229767	1.00000000000000000
+ENSG00000018280	11.45569973375404338	34.48427636085652637	279.02268309585429051	3.46184145741013616	23.18945553777986390	2.60513643659710992
+ENSG00000019169	1.00000000000000000	6.27291899818795606	23.83663460153366387	1.00000000000000000	1.00000000000000000	2.17924528301886422
+ENSG00000019582	23946.82913980942976195	26982.05615429106183001	7797.07833081507760653	1398.82091269216766705	1227.57870687218678540	942.05675843247263401
+ENSG00000019991	1.73997336095900224	1.53775005377500262	15.65123483001455895	1.00000000000000000	6.43028940702483442	1.00000000000000000
+ENSG00000020633	41.91827107976457256	39.48615110012871554	57.20292939315238101	289.07377929220535862	30.46631791098194952	119.52228211712480288
+ENSG00000021300	5.87127999520552191	2.15500115500114919	1.00000000000000000	5.38046958438607170	5.50413721051323801	44.45935855598568054
+ENSG00000021762	1.00000000000000000	8.16474770639092284	18.43074112534766584	107.99138236998061302	2.95812403720031769	28.75994422660059868
+ENSG00000022267	4.06278713629401356	9.10126706411984365	3.44021473889702500	1.00000000000000000	253.84144675739943864	22.73358540844175479
+ENSG00000023171	1.26119208065611521	51.21699293315391799	11.08613786078566754	11.52109746128784273	7.26811642998130036	9.13753758487623102
+ENSG00000023445	278.37868239531240988	19.98598210578373724	47.30586899332818263	17.05476364288167801	31.41023130397721630	70.41221784965013342
+ENSG00000024422	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	13.73151682330494694	1.00000000000000000
+ENSG00000025708	74.24204208596447074	726.36451312142116876	1460.28954356367717082	101.12033628747111891	67.74424252192977747	37.34979978455571370
+ENSG00000026559	19.34143877851915150	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000026751	25.55592097482319147	58.67333469075371255	28.17221289207357415	112.44746856701574700	2.76678445229681547	31.90659253279718754
+ENSG00000027001	22.64991914202918366	3.52526344395874913	2.35098621994055668	8.16428796806017942	3.48486573909848429	12.48411770087442285
+ENSG00000027075	3.73972602739726945	6.47335923237369215	17.41599387558627399	290.23571763598386042	34.42497951051396399	156.92694393101587025
+ENSG00000027869	2.76104892901103049	3.95159386068475449	1.00000000000000000	272.09499742530840649	14.32507795169945197	92.35578291220100766
+ENSG00000028137	41.91445259127831235	125.63441265907280808	498.22386075281991680	183.28633881971617825	11.94495798916261542	88.45854517169964026
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+ENSG00000242114	9.40926159372700788	4.40481499792765874	4.10412422263473520	27.40657848500027072	5.79115336108161838	32.02842497091653939
+ENSG00000242265	14.52760790314622241	1.60306356289952934	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000242498	1.00000000000000000	7.39334190600389629	12.52888692931741410	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000242574	234.94681164386210526	284.08518368826798906	97.79229659631727145	12.58485696699196410	14.82858981222776862	3.28832951945079799
+ENSG00000243156	66.38917528953818703	5.01646441821636291	2.18147448015122958	12.37534811796769141	13.81016756523655964	9.46553362217646566
+ENSG00000243414	1.00000000000000000	10.65897652203132751	14.43786932668378498	1.00000000000000000	1.00000000000000000	3.84252416145535802
+ENSG00000243772	1.00000000000000000	1.00000000000000000	3.12856534695615141	96.78039975371835624	1.00000000000000000	8.16502172128682346
+ENSG00000244482	1.00000000000000000	29.83470125772536008	64.01516183838555207	1.00000000000000000	7.18326473395371679	1.00000000000000000
+ENSG00000244734	192.85009913966001704	20.18125974487189112	1942.85208421375523358	27.99422206878531583	182846.86536248758784495	22.25538250505643489
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+ENSG00000253910	1.00000000000000000	1.00000000000000000	1.00000000000000000	7.75027560375499203	1.00000000000000000	2.52998776009791726
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+ENSG00000259207	1.00000000000000000	5.09836065573770281	1.00000000000000000	5.54132606721161292	199.90719713274319247	1.00000000000000000
+ENSG00000259330	4.62518207205490395	11.95765460475695896	13.60233926548843542	4.15855969677826032	147.76631380914750480	3.47910702144330264
+ENSG00000260027	3.38891543239370119	1.00000000000000000	1.00000000000000000	9.55295720035908857	1.00000000000000000	7.96751982828468464
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+ENSG00000261150	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	5.01494777263134139
+ENSG00000261371	54.53698579838384575	101.90824957806341899	421.18281322471307249	57.77661849634757374	188.41886857224511687	36.12725209109080282
+ENSG00000263961	17.48894225725867102	37.71307921138861019	1.00000000000000000	1.00000000000000000	10.70576047104224315	2.92381685263562296
+ENSG00000264522	3.80181486019082993	1.00000000000000000	1.00000000000000000	16.89421521383417613	5.96606996408133927	6.42553978837763395
+ENSG00000267041	1.30954002352504051	2.24069478908187936	1.00000000000000000	3.39821653756079645	19.75549802871458738	2.50466445982545682
+ENSG00000268163	5.24749939501491092	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000
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+ENSG00000270882	1.21944261575597923	2.09553023663452542	1.00000000000000000	1.00000000000000000	41.52234945438029712	4.08641975308640237
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+ENSG00000271605	21.38886358450954361	45.23047601628093162	28.55284261462517392	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000272398	119.64900895585705598	1.87092840968472363	3.98950745964425479	1.00000000000000000	2.16441546343735158	1.00000000000000000
+ENSG00000273802	1.60016597540034478	2.70461498167933279	1.00000000000000000	5.20694870046050173	59.32367460965141959	2.84638109305759723
+ENSG00000273983	23.73514116302033727	1.48295180141021965	3.22436487976926633	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000274180	1.00000000000000000	3.27823902838463299	2.77179305457122283	3.69632091409421992	34.54545809476621088	1.00000000000000000
+ENSG00000274588	1.00000000000000000	1.00000000000000000	1.00000000000000000	8.03237020392959167	1.00000000000000000	1.00000000000000000
+ENSG00000274641	2.49748240163605040	1.84373945325682964	1.00000000000000000	1.00000000000000000	172.56536998615797529	4.08641975308640237
+ENSG00000275302	10.02929430405550271	3.18133279608719333	8.23948425472875456	780.89444485665626416	3.13492741246797468	178.77634794256925943
+ENSG00000275379	4.10069233907739594	5.04278468505127897	1.00000000000000000	12.36432704549334360	1.54224053790261384	2.22850122850122689
+ENSG00000275713	7.50139196818324727	3.23623791977780950	1.00000000000000000	7.71642693901564680	223.52646586463137623	9.64747671761866421
+ENSG00000275896	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	53.24056405337643838	1.00000000000000000
+ENSG00000276070	1.00000000000000000	12.46008281015737928	7.48660458415218422	41.82238269116666629	1.00000000000000000	17.54631735564526096
+ENSG00000276644	1.00000000000000000	21.26648395376142275	2.28106584678452506	1.00000000000000000	3.14581570592049209	1.00000000000000000
+ENSG00000277075	15.06757013520465804	9.63129825468683087	4.44843574318137414	9.77845642119788927	126.88346383829940578	13.54081005937418603
+ENSG00000277443	130.47530624862926629	112.88764698689281829	430.21427135418093712	2.36649357748018163	10.46295518015529780	2.92381685263562296
+ENSG00000277462	8.12797632590410402	1.95620577548288321	1.00000000000000000	3.81214848143981611	1.88633425129294552	1.00000000000000000
+ENSG00000277586	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.95292548122736553	9.91911796705206150
+ENSG00000277632	6.40987795113254766	15.44855886087377073	84.18577890084101512	159.97211191408038644	4.61063632746540630	8.79436486255278460
+ENSG00000277775	11.93138517285160383	1.45187528242204911	1.00000000000000000	8.49853001410450304	3.49231854102273909	1.00000000000000000
+ENSG00000277972	25.61323623143705319	56.72862188956580098	74.00674368083399202	175.80599724777678716	15.87720741736669261	61.78601944009383118
+ENSG00000278828	10.82615896429495628	8.61983711727084589	4.35626804951782187	20.60617265307406853	1227.26196474966468486	15.90851289862635909
+ENSG00000282988	1.67043543533224992	1.44939780693870190	1.00000000000000000	2.76366843033509246	32.76441587259852639	3.14500214500214170
+ENSG00000283632	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	14.52152168205704008	1.00000000000000000
+ENSG00000283782	32.58038660276692156	9.77218971181909168	19.59085333996305067	135.22865147766128757	11.26665146387151850	65.55912717706719661
+ENSG00000284691	48.34772773532754542	8.94167791669011436	2.71182191652035298	13.74602159926955558	5.48048340604529916	25.56080469187007864
+ENSG00000284976	1.00000000000000000	5.26511935360616867	1.00000000000000000	4.13479623824450560	51.80794547926854676	1.00000000000000000
+ENSG00000285043	1.00000000000000000	1.00000000000000000	1.00000000000000000	3.67952840300106754	18.35247881754193600	1.00000000000000000
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv4/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv4/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e52e2032a16c79ccce64c632dfc133eccc9fefc3
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv4/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
@@ -0,0 +1,6 @@
+B cell	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+DC	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+Monocyte	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+NK cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2
+Other	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2
+T cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv4/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv4/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c89c2c9ef380ed32f04ba53b3ac632739d393bf1
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv4/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt
@@ -0,0 +1,2340 @@
+GeneSymbol	B cell	DC	Monocyte	NK cell	Other	T cell
+ENSG00000000971	1.76112085193188594	0.00000000000000000	3.98375291608085469	2.16559815939610845	14.16723110124666007	16.19256335428205062
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+ENSG00000002587	7.60486063370706944	5.01198619697611836	0.61420214031811549	0.06812208092126881	0.00000000000000000	0.01012382631766814
+ENSG00000002933	0.00000000000000000	17.33836178776796899	123.18258036270313482	0.79265113227344242	11.34532982203007911	0.81761330780696295
+ENSG00000003249	11.30904125527140458	0.71561700156820762	0.21600489756796035	0.00000000000000000	0.78560938605985520	0.00000000000000000
+ENSG00000003436	0.13224167131146777	1.66849600425120737	0.00000000000000000	0.61592801672865849	25.88722086293447333	0.00000000000000000
+ENSG00000004468	105.54361099630325782	46.99914903025044310	9.43972631471969947	173.78001525329335664	12.44957229213891026	17.93080046251060011
+ENSG00000004799	3.45869855315034647	36.12726290268705753	123.00739847035305274	9.49860988693737696	0.00000000000000000	3.52549283055150697
+ENSG00000004939	3.77487379760135644	5.33530560662216846	0.00000000000000000	0.00000000000000000	651.93183016097077598	21.96535720543754877
+ENSG00000005243	3.49515844891996075	2.66108657087181344	0.26760153798118447	11.04760006659934213	1.91624398105657479	1.15479440475820105
+ENSG00000005249	35.64113599286898904	36.86104914086297413	21.66022758612839638	35.26469746914776948	610.21959894829149107	6.65908182219961642
+ENSG00000005379	11.04266478506416149	27.55004191901729271	21.53871634781495814	125.73460724866019689	13.79029252040194997	20.49540081829143290
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+ENSG00000005471	15.23731634785942290	4.06183186246878680	0.29013827678932153	0.16309557709920566	0.00000000000000000	0.00000000000000000
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+ENSG00000005961	37.68759460218093693	25.59764587870153818	0.00000000000000000	24.72071079096827617	543.38903061433370567	10.02049475158775849
+ENSG00000006530	23.99619333860240644	12.86403925183458519	11.76594123777020684	80.51619810072335781	10.68583622950552403	33.37122545062466372
+ENSG00000006534	3.04503712364435852	76.39751675041387102	167.88478137156010916	17.12538777550395253	5.56605849659781438	8.19579186237889878
+ENSG00000006555	2.23165822265390013	3.24115914565681518	0.00000000000000000	21.72978889618797638	2.56878716362658333	10.40555744091433787
+ENSG00000006638	2.43062077158098067	0.00000000000000000	1.65585185836900428	2.67022518824407129	38.93593689915136480	0.22085904913608603
+ENSG00000007062	0.00000000000000000	0.06432662907339499	0.00000000000000000	0.00000000000000000	6.30953452332055598	0.00000000000000000
+ENSG00000007237	42.44639823593283978	160.53499391736104940	342.13914421134995791	117.21204789591578788	35.06459223616131737	29.85862996421327864
+ENSG00000007264	16.57225971081341243	11.20615246555417599	21.17719498601178429	320.51261225274333810	30.99416374145962294	91.10417556889187551
+ENSG00000007312	140.27916938258246660	6.38243317234326568	17.06281313789811804	10.20541144211803264	6.85919189372951443	8.69860858978330143
+ENSG00000007350	1.58750558732427050	0.00000000000000000	2.62021292828917174	43.42748700318227861	0.00000000000000000	8.18442033700098825
+ENSG00000007402	7.61105183816574637	2.83326359835472985	7.67424819450574791	52.06719355381813585	0.00000000000000000	19.94629333893762890
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+ENSG00000008277	0.37394824681829164	0.19912905312642032	1.31104930194021119	9.60341840117497725	0.46797357622235530	6.75051947874984570
+ENSG00000008282	105.03666385545426465	33.80103882092863188	32.19684936518580542	16.91617591957669475	56.62613701028531210	38.70663948782003416
+ENSG00000008394	2.55147264824289532	46.19141297333685259	81.80046603318822918	3.50257009934044072	19.48317711236790473	1.57171802406278216
+ENSG00000008441	5.87571719663166192	3.79385655365092544	5.92423211022459029	8.65081311972272893	76.27706040330407689	10.06542887447314705
+ENSG00000008517	63.64299542518335784	22.90446416523511530	81.19501829120468983	653.22882568193062980	131.40273563840403881	1104.61816066156302441
+ENSG00000009694	2.55127585771216703	1.68032446817624570	1.62136309415736335	14.83921456078098799	0.06168177733857241	11.12533625526901204
+ENSG00000010278	19.53373725244539827	5.28977746189535036	11.38573541838407621	16.51674479094813819	162.38521445023377510	2.16609809839105560
+ENSG00000010327	9.72466322407521666	113.70977462014489845	397.76768451117612813	43.35830273658675793	36.02790688230537341	9.12455197037017385
+ENSG00000010610	25.20906105919750573	373.32972337787862216	287.00699922928674823	36.48698383744836349	59.73942032681765824	153.71393332396047526
+ENSG00000010671	153.63910602913909997	71.58883783047879490	94.96926343779283286	25.24952951490425335	147.97990541955297772	10.42612651551513814
+ENSG00000011105	0.63175406413330903	1.57524038800622601	0.74399993541846121	0.00000000000000000	42.52061151205072775	2.27758367719113641
+ENSG00000011422	27.63921761754829731	303.51299070538249225	360.81461866586096221	28.53747164723814222	21.87106451634230098	9.11334148523554077
+ENSG00000011478	6.97648013270454292	6.97924910982500979	1.83455175252124869	3.31458660759549018	1.86062590522678972	13.21784687144051063
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