diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv1/out_hires/fractions_results.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv1/out_hires/fractions_results.txt
new file mode 100644
index 0000000000000000000000000000000000000000..53058d22903a745f33fc2d04a38a958f94e40efe
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv1/out_hires/fractions_results.txt
@@ -0,0 +1,18 @@
+Mixture	B cell	DC	Monocyte	NK cell	Other	T cell
+Abd-PS07	0.0256801400903284	0.0870405657656913	0.0175124477956227	0.2714285882060743	0.0110251670915203	0.5873130910507626
+Abd-S120	0.0865785143453623	0.1998335966360004	0.3160341610109053	0.076733043648285	0.0444153289286447	0.2764053554308019
+Abd-S156	0.0123629186830404	0.2952461685546063	0.3155559741072668	0.0520228692360373	0.1315623620884978	0.1932497073305511
+HC05	0.087047699052666	0.1667155088851461	0.0	0.2350421924228617	0.0	0.511194599639326
+HC13	0.0815970741317387	0.1826718494641767	0.0	0.2431605707368772	0.0073841481916536	0.4851863574755536
+IC16	0.1822921099976787	0.1264927588455534	0.3498298623594285	0.1209634311465625	0.0659271932371549	0.1544946444136217
+PHC01	0.2037038504223038	0.1397727651289995	0.0178760664513613	0.0878433696536765	0.0160955514697631	0.5347083968738954
+PIC05	0.2299891533013585	0.1997601262667021	0.0814449721550424	0.0	0.0107534289738636	0.4780523193030332
+Res-PS12	0.3809625734111308	0.0	0.2062924343342135	0.0	0.0381654559907437	0.3745795362639119
+Res-PS22	0.0168164922788028	0.2837975207206102	0.2100137662921624	0.041402587085284	0.0001673203301479	0.4478023132929924
+Res-S10	0.0226709708100503	0.0070404743903834	0.0639554293630046	0.0	0.1807910002295748	0.7255421252069865
+Res-S184	0.0579998741602064	0.0590987826723711	0.2754974036501372	0.2025975761962157	0.0376189558655811	0.3671874074554883
+Res-S19	0.0322008972458188	0.1190365102525303	0.1277080339731533	0.1638313813413321	0.1833151804080216	0.3739079967791436
+Skin-S142	0.0314842108386335	0.2501253600672904	0.3914695047377506	0.0446532402036191	0.0190591817466466	0.2632085024060595
+Skin-S46	0.045357616283035	0.1756660137966115	0.2389310452649877	0.0923007958579904	0.1994138606827058	0.2483306681146694
+Skin-S52	0.1720016297903029	0.0	0.0622989777152372	0.0	0.2505820910069425	0.5151173014875172
+Uri-S157	0.2615260036195391	0.1935020719572198	0.1663288801580464	0.0471634899246234	0.0115657621983954	0.3199137921421757
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv2/out_fractions/CIBERSORTx_Adjusted.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv2/out_fractions/CIBERSORTx_Adjusted.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9c9cb123ab251c7ee3cc2be5d47086b703e73e20
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv2/out_fractions/CIBERSORTx_Adjusted.txt
@@ -0,0 +1,17 @@
+Mixture	B cell	DC	Monocyte	NK cell	Other	T cell	P-value	Correlation	RMSE
+Abd-PS04	0.07691227463677400	0.24675139140890540	0.49201630685647135	0.01655017129969810	0.11691448971159736	0.05085536608655378	9999.00000000000000000	0.76954242088626779	0.76083084942735590
+Abd-PS05	0.36120055388387506	0.03561115283992772	0.13896609740532850	0.03377372519398186	0.25475273954557565	0.17569573113131115	9999.00000000000000000	0.56240446841516145	0.82963600288523975
+Abd-S57	0.00000000000000000	0.29814764667974047	0.14213674485694006	0.06897920015413192	0.10271461521899228	0.38802179309019513	9999.00000000000000000	0.76921364146094418	0.67679198737477864
+Abd-S79	0.17545841264575152	0.05876693574267101	0.38016283968747161	0.02518275298066718	0.03839123240172147	0.32203782654171731	9999.00000000000000000	0.94314307760171667	0.34394847589521071
+HC09	0.02763615693730677	0.25521363842756833	0.00000000000000000	0.21004473919813854	0.00000000000000000	0.50710546543698631	9999.00000000000000000	0.83076392145813971	0.74369856825849212
+IC10	0.12194641960574523	0.08719049091177515	0.06765151634645945	0.13089168749891636	0.10538692618537597	0.48693295945172793	9999.00000000000000000	0.79054669104144304	0.76503484329587823
+IC19	0.04380177938135738	0.36802647771566399	0.17119893406813930	0.00000000000000000	0.11620704028694337	0.30076576854789594	9999.00000000000000000	0.83659643273440365	0.57869185648706023
+PHC05	0.07633874395187214	0.29090767196184458	0.00000000000000000	0.03516482083033266	0.01691393082876389	0.58067483242718676	9999.00000000000000000	0.86629317968562347	0.71694927056885094
+Res-PS26	0.19790721616912008	0.00000000000000000	0.07984052184961642	0.00000000000000000	0.00000000000000000	0.72225226198126347	9999.00000000000000000	0.85802845477464951	0.76407458454593369
+Res-S146	0.11144812979032681	0.10164737819117778	0.28726965186967784	0.00000000000000000	0.02398524527225492	0.47564959487656261	9999.00000000000000000	0.85548145703796530	0.54406016471056262
+Res-S150	0.14183422533056217	0.16034298791553972	0.33833738944575315	0.12009801744708437	0.20856813981220190	0.03081924004885891	9999.00000000000000000	0.86764713742055677	0.49791076980684429
+Res-S174	0.08562069829562509	0.16876803820062522	0.05518601718178551	0.03527682194805275	0.09799963302128660	0.55714879135262474	9999.00000000000000000	0.84230166969977993	0.73475004395912380
+Res-S177	0.29496663191127259	0.04907074470862550	0.04554176884693946	0.08667653267088295	0.00000000000000000	0.52374432186227948	9999.00000000000000000	0.90057620501788593	0.72177827729117405
+Res-S40	0.11865252122185781	0.16269712851016327	0.14224035182032524	0.04846118480854052	0.06469662806985865	0.46325218556925463	9999.00000000000000000	0.81185963546599516	0.67385074873906958
+Skin-S152	0.00000000000000000	0.34909816282939921	0.14041401902235595	0.07676975719145941	0.00742235760165034	0.42629570335513506	9999.00000000000000000	0.82438011558371704	0.62105904102659593
+Skin-S74	0.00978047446314833	0.02353168303436361	0.00538733005799228	0.27958114279093610	0.00565526939516994	0.67606410025838981	9999.00000000000000000	0.83047996857575024	0.80325714840799001
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv2/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv2/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
new file mode 100644
index 0000000000000000000000000000000000000000..32ac04f5edbce5e911d10195dd1bbd561a28173c
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv2/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
@@ -0,0 +1,2348 @@
+NAME	B cell	DC	Monocyte	NK cell	Other	T cell
+ENSG00000001561	9.90272734241258767	8.63042270589544458	4.66426880445297165	48.99361244583167974	1.66577896138481840	23.74565152934793488
+ENSG00000002587	29.78797327689960994	13.26381727870069049	1.69290465631928777	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000002933	1.00000000000000000	45.25742824936676101	249.39322536995877044	7.93481276005544967	15.23254558518756774	1.00000000000000000
+ENSG00000003096	1.00000000000000000	8.09738268490884572	1.00000000000000000	1.00000000000000000	4.50631136044875902	1.00000000000000000
+ENSG00000003249	40.57930942051937251	3.84351379757590772	1.00000000000000000	1.00000000000000000	1.00000000000000000	2.28053009757161629
+ENSG00000003436	1.00000000000000000	5.32291221528657221	2.06951871657754038	1.00000000000000000	118.90819318242679969	1.00000000000000000
+ENSG00000004399	1.93949642991356486	20.73152942875254112	46.65122772783921334	8.62754255004097104	7.55011362081579218	10.30462204143403504
+ENSG00000004799	5.00962309542902506	15.63770907770119933	52.10035097401640058	1.59150597421033857	2.95694716242661926	1.00000000000000000
+ENSG00000004838	1.00000000000000000	1.29768992617289891	1.00000000000000000	7.68319282300867190	1.00000000000000000	3.31000231000230061
+ENSG00000004939	1.00000000000000000	1.00000000000000000	2.84195984527537071	1.00000000000000000	188.13391670730956662	1.00000000000000000
+ENSG00000005243	1.00000000000000000	1.21553582205362565	4.64972678822757857	22.87270232995354746	4.45065562456865482	2.71762281003091521
+ENSG00000005249	20.90171616863193549	59.27855661517327235	54.02329921234921528	7.97915534235858459	2889.74006125615733254	3.60465200212691395
+ENSG00000005379	2.05218855218855101	3.90026878529725440	6.93155687971933610	48.68122044867538989	11.16260162601622419	18.87994748738785233
+ENSG00000005381	1.00000000000000000	1.97541943035505430	7.09914135226341436	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000005469	5.54603589808629138	4.94508773392016199	6.15463915468888167	20.87375431092245393	1.66577896138481818	12.26230886186135471
+ENSG00000005471	22.98083882090573127	2.83068125796707948	1.00000000000000000	1.85309674117044665	1.00000000000000000	1.00000000000000000
+ENSG00000005844	16.94111654906151898	56.68395225446522545	127.32966085012108692	223.33228656114511068	29.68148646087300335	113.88080071745733335
+ENSG00000005961	9.21337567081573461	6.48614258521019327	14.45886194684404380	3.52716704574171702	1217.38239557831093407	3.47511390911170315
+ENSG00000006453	11.37684134815139281	1.39993601023836023	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000006530	15.21557173348790393	9.57829645733348478	4.79704494792513714	53.84792134805349662	3.22402520112443636	15.39892500188850377
+ENSG00000006534	1.00000000000000000	28.38099255922577058	59.39988163087306106	2.51727634435659153	8.41781154555288325	1.00000000000000000
+ENSG00000006555	3.19374338851632578	1.00000000000000000	1.00000000000000000	12.81471770507306651	1.00000000000000000	7.02303891856055262
+ENSG00000006638	13.15924336318797572	1.00000000000000000	1.86964711607799816	9.14933529901182041	156.33643935101517286	7.22821834422642340
+ENSG00000007237	3.17724968730322788	37.61207292342952258	116.06420814370223127	27.08727092869833442	2.55666251556662871	4.42777788525999050
+ENSG00000007264	4.27815038218823407	8.23119731538310795	9.55474044889020213	333.88523638022491014	18.41690144016362041	90.57172974694840661
+ENSG00000007312	586.58804418422892013	19.21723645383066170	29.19875183213122938	31.75528642040557159	7.05834434043035852	22.62584978101851618
+ENSG00000007350	1.00000000000000000	1.00000000000000000	1.00000000000000000	76.06285690380056508	6.90225859762327243	4.67143194347950530
+ENSG00000007402	1.00000000000000000	1.22557069385545336	1.00000000000000000	18.49559250790845155	1.00000000000000000	9.14408032921391367
+ENSG00000007516	8.37174521819424200	1.00000000000000000	1.00000000000000000	3.99860924943519214	2.82016745540589042	2.76635032349643151
+ENSG00000007545	15.06589679159626272	6.88878744721817249	9.68616440825245739	35.44406600368881755	16.00593345855243754	9.80288981563914241
+ENSG00000007968	1.78780001720217330	6.27665144028120814	19.32622862501906269	1.00000000000000000	19.17739468441079964	1.00000000000000000
+ENSG00000008282	175.46940574646097843	47.97608139240607983	33.29956341674821374	21.63501514076429189	41.05406446506298579	63.43559785879408253
+ENSG00000008394	1.71879099354884946	75.60497751623906026	160.81659648329878110	1.84559445290038560	9.32626980809204831	1.00000000000000000
+ENSG00000008405	26.56270594113018646	9.61481255540702051	6.74643258357802367	48.43123343212203480	3.60727489590527473	22.23137172092641478
+ENSG00000008516	1.00000000000000000	4.63117170954769453	38.11666136001279170	3.63072033194245147	3.62850745251072704	2.08365843086259517
+ENSG00000008517	24.93800994868906429	96.86673978074310298	78.06691913485178702	1369.26118794769604392	268.20150746952407417	1853.72116638958982549
+ENSG00000008853	16.89541307618673116	9.40052920881283960	4.20558311320448386	8.48536610674873337	1.00000000000000000	2.71417831365246398
+ENSG00000010278	43.35856236728552204	11.59654762656090554	21.94906782241994136	12.60849667996524559	710.10303883893368493	7.29196173902731903
+ENSG00000010310	1.26573129251700589	4.44802129318995743	1.00000000000000000	9.82810171414142175	1.00000000000000000	8.17364658383423226
+ENSG00000010327	2.79018976011456665	40.83375402855011771	206.54355618094115243	1.67168189145620549	15.38439047183808306	2.83083119736360089
+ENSG00000010610	2.19658905813282956	139.26254901053926005	73.78603608982653839	10.28304947253134927	25.69794613971656005	61.99147886096655213
+ENSG00000010671	94.62483348442385989	78.45033631403487107	44.57187248984467942	2.03327133705311525	97.36843114346666539	3.15182173874241345
+ENSG00000010704	1.39881949429688079	12.53192254293147734	6.53849199650002877	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000011105	1.00000000000000000	1.00000000000000000	1.00000000000000000	2.44885540423065162	53.82160659534081759	1.00000000000000000
+ENSG00000011422	1.41383876841582445	106.50909705024318441	259.57073629715375773	1.85925416738270943	8.00280112044819703	8.19638822665873690
+ENSG00000011590	6.20195909261414968	1.00000000000000000	1.00000000000000000	1.85309674117045309	1.00000000000000000	1.94768764215314349
+ENSG00000011600	12.80316093486055351	1743.49184745623074377	3821.66700177580605668	1774.46351576501638192	181.50462031394926044	74.08391525975643788
+ENSG00000012124	185.54389684631567548	8.72349225305242371	2.73045825520848284	2.23309370119476691	1.00000000000000000	1.80710250201775535
+ENSG00000012779	144.97718204233495953	76.63230320756954939	161.04021140214368302	3.73822456556241933	1.97847358121330941	7.01247154275022844
+ENSG00000013016	12.60820627894153212	2.66498228969317985	4.51638192873760413	4.29097767998733737	155.09514327342529327	3.43222643431331909
+ENSG00000013306	67.40354560393890893	84.98147562941132094	50.30265666612156394	76.35979270093808680	557.86900286979846442	71.83677889734715905
+ENSG00000013725	18.60669406034353202	13.78050397903823665	6.78474359414105255	79.41075966999676439	42.41930026604926240	165.84102670445139438
+ENSG00000014257	1.81274382314694149	11.98700681595236262	17.52829928107838953	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000014914	1.00000000000000000	38.53402472701272075	42.38184110012220884	1.84559445290038560	1.00000000000000000	1.00000000000000000
+ENSG00000017427	3.23956020464689631	1.13420116755015798	1.00000000000000000	1.00000000000000000	16.45423497267753987	1.00000000000000000
+ENSG00000018280	8.44588335510417565	36.67634357117238153	454.53939644838970935	9.56782593359993250	52.60198461025300531	3.33188061030342864
+ENSG00000019102	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	10.94405668741246984	1.00000000000000000
+ENSG00000019169	1.00000000000000000	16.22650852599363347	74.81505968010449692	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000019582	19236.33422825122397626	21237.21231940522193327	3749.93119210804616159	1445.95628104123807134	928.46677915544842108	943.05094272679752976
+ENSG00000019991	1.00000000000000000	2.60526766947766397	18.11775502659281045	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000020633	75.48349348563128558	53.47462049722831523	47.61606588395500950	540.25222124504216481	26.60053178875009650	183.31641988622854456
+ENSG00000021300	14.45699193241045144	2.22477991011503562	1.41715334556982997	13.59809210636544918	6.78860923977961939	40.19923834333354762
+ENSG00000021762	1.00000000000000000	7.89650894139979531	10.59241795535104913	97.76797917240411095	1.99940035978411546	11.78643558362081301
+ENSG00000022267	5.36125144465153181	6.45255828659378228	5.06874804913398780	2.60513643659711835	337.47507399763645708	11.41880650540556630
+ENSG00000023171	1.00000000000000000	31.77497568383152071	14.23842668426676461	4.68354965910384724	4.11087521085604113	6.58766108937889427
+ENSG00000023445	239.50486017294537078	27.20602475079500948	31.37711156045934402	27.62476379785906033	26.57400297279163581	53.24445072364973441
+ENSG00000025708	34.25326555379601245	621.78536823137892497	1184.05057800745748864	42.45746581637678219	83.18023300570378353	30.14116930377720038
+ENSG00000026559	36.61342277858317118	1.39993601023836023	1.24108003857280536	1.00000000000000000	1.00000000000000000	1.00000000000000000
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+ENSG00000278828	10.74492871395277405	10.77110740343906770	12.19179232350634479	13.09429914340372747	1078.15870735917951606	10.43751109415695666
+ENSG00000280571	1.32128866391407374	5.07961791118651540	2.42090293728631245	2.86121810453360759	21.58629649045130350	3.52952234770248774
+ENSG00000280670	12.11291624700346681	1.00000000000000000	1.00000000000000000	2.23670541676972379	1.00000000000000000	1.00000000000000000
+ENSG00000280969	8.66790469024446075	1.32959789057350086	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000283632	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	16.64491062198188231	1.00000000000000000
+ENSG00000284337	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	6.93943518891513111	1.00000000000000000
+ENSG00000284691	39.69906919324919414	7.05216662997368360	6.06698277238067885	13.19593728954990830	2.21684108055488238	23.50892706163497792
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv2/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv2/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e52e2032a16c79ccce64c632dfc133eccc9fefc3
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv2/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
@@ -0,0 +1,6 @@
+B cell	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+DC	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+Monocyte	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+NK cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2
+Other	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2
+T cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1