diff --git a/paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/metadata/NOTE.md b/paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/metadata/NOTE.md new file mode 100644 index 0000000000000000000000000000000000000000..c6c91985f5deed418903075e6a340cc0982e27da --- /dev/null +++ b/paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/metadata/NOTE.md @@ -0,0 +1,5 @@ +# PBISC-diffusion update 20261006T033847Z-bulkonly-lora5-k4000 + +Bulk-only LoRA-5 at K = 4,000 (plans/bulkonly_lora5_k4000_20261006, 2026-10-06, user request): the five few-pair LoRA-5 models retrained on K = 4,000 real-bulk conditions (byte-checked against K = 1,000), 4,000 cells per bulk-only sample with independent per-draw seeds; paired benchmark vs K = 1,000 with the benchmark scorer (composition L1 improves in both cohorts, logFC r unchanged); calibration comparison; 10 LoRA checkpoints on server_2; shared on Cloudflare R2. Raw generated NPZs registered as locations. R2 share: r2://pbisc-data-private/shares/bulkonly_lora5_k4000_20261006/ (sha256 of every object in share/SHA256SUMS). + +Payload states are recorded as supplied. Inference locations are pointers, not archived generated outputs. diff --git a/paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/metadata/inference_locations.json b/paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/metadata/inference_locations.json new file mode 100644 index 0000000000000000000000000000000000000000..f2f04f529f880acf346f610f920f4ef27145b2cb --- /dev/null +++ b/paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/metadata/inference_locations.json @@ -0,0 +1,4221 @@ +{ + "locations": [ + { + "artifact_role": "inference_output", + "cells": 92000, + "checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/runs/imperial_eskd/draw0/lora_k4000/checkpoint_ft.pt", + "checkpoint_sha256": "ae1f8e837b0c6ee1d3f9ef9352f78614c386c4549572e42f77fa118887d684cf", + "cohort": "imperial_eskd", + "condition_npz": 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"artifact_role": "shared_cells_h5ad", + "cohort": "ye2026_sepsis", + "experiment": "bulkonly_lora5_k4000_20261006", + "host": "server_1", + "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/share/ye2026_sepsis/lora5k4_bulkonly_ye2026_sepsis_draw3.h5ad", + "receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/share/MANIFEST.json", + "sha256": "6bb9b4094dadb953e8055e04610162a4837d443db505707c9d55110d313fed9c", + "state": "completed" + }, + { + "artifact_role": "shared_cells_h5ad", + "cohort": "ye2026_sepsis", + "experiment": "bulkonly_lora5_k4000_20261006", + "host": "server_1", + "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/share/ye2026_sepsis/lora5k4_bulkonly_ye2026_sepsis_draw4.h5ad", + "receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/share/MANIFEST.json", + "sha256": "5536c482df460ad89017dd421d3b6c3e63505fd1ff62825b435d1e6f9e68b55a", + "state": "completed" + } + ], + "project_id": "pbisc-diffusion", + "summary": "Bulk-only LoRA-5 at K = 4,000 (plans/bulkonly_lora5_k4000_20261006, 2026-10-06, user request): the five few-pair LoRA-5 models retrained on K = 4,000 real-bulk conditions (byte-checked against K = 1,000), 4,000 cells per bulk-only sample with independent per-draw seeds; paired benchmark vs K = 1,000 with the benchmark scorer (composition L1 improves in both cohorts, logFC r unchanged); calibration comparison; 10 LoRA checkpoints on server_2; shared on Cloudflare R2. Raw generated NPZs registered as locations. R2 share: r2://pbisc-data-private/shares/bulkonly_lora5_k4000_20261006/ (sha256 of every object in share/SHA256SUMS)." +}