diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot2/out_hires/fractions_results.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot2/out_hires/fractions_results.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2f2329a58cc95fafa5d18fad36cfb66de0ae82bd
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot2/out_hires/fractions_results.txt
@@ -0,0 +1,27 @@
+Mixture	B cell	DC	Monocyte	NK cell	Other	T cell
+N064_TOL	0.1259730357020579	0.0234502212222889	0.2904693024372577	0.0292702798766735	0.0401104277496022	0.4907267330121197
+N064_FU1	0.0913118339918564	0.0	0.2813749998232911	0.1183406107591819	0.1229474240250671	0.3860251314006033
+N038_BC	0.0789817934001285	0.0170442237779429	0.224552926295534	0.1283571125831961	0.2519903058963108	0.2990736380468874
+N038_AC	0.0914888135273416	0.0169121915874332	0.256912854759612	0.1183120714792342	0.3003663479575133	0.2160077206888655
+N055_AC	0.2064957440136125	0.0114749225266662	0.3070386865625272	0.1033923506599125	0.3132256115923985	0.0583726846448827
+N136_TOL	0.0831949087439005	0.0	0.4113220146893197	0.0186619265381683	0.4868211500286114	0.0
+N136_FU1	0.1295167771868019	0.0	0.4953493131992004	0.0002492774136058	0.2827051168170798	0.0921795153833117
+N138_TOL	0.0651328317964238	0.0295454649539872	0.2660148112390863	0.0487118755092562	0.5905950165012464	0.0
+N138_FU1	0.035918391657621	0.1249060544912063	0.2640236151527378	0.0338981622987358	0.5412537763996988	0.0
+N128_BC	0.1026393906032951	0.1143415763687213	0.3300386046547274	0.0	0.2165251080161241	0.2364553203571319
+N128_AC	0.0699070992338013	0.1486552030320105	0.3216034846420714	0.0	0.199521315237359	0.2603128978547578
+N129_BC	0.0741890950743105	0.116250298568916	0.2968629074601688	0.0042772265117883	0.2517677496958417	0.2566527226889743
+N129_AC	0.0740680321157308	0.1028229411136764	0.2210238588346993	0.0745983231519539	0.2673211111784181	0.2601657336055213
+N150_BC	0.0578303624871314	0.0693949471674073	0.1854969872297777	0.0829240153252986	0.2597172531802419	0.3446364346101429
+N158_AC	0.0519620351212354	0.1144596767645078	0.2072483602951302	0.0078247412599718	0.5521427282548665	0.0663624583042882
+N159_BC	0.0638400959532693	0.0	0.1913026180202019	0.0	0.3462508155680716	0.3986064704584571
+N001_TOL	0.0653171801104317	0.1085506424142144	0.1338937528779749	0.0600641632585715	0.4054235733314196	0.2267506880073877
+N001_FU1	0.0872943919723245	0.0644704556741967	0.2096728955069759	0.081370510017734	0.5157622386049219	0.0414295082238467
+N002_TOL	0.1297659934714979	0.1595416464956816	0.1908582812625043	0.0162790527679744	0.2104691905031629	0.2930858354991785
+N002_FU1	0.108101597408486	0.1740880246527187	0.1536273018694019	0.0421500299696169	0.3827854842989816	0.1392475618007945
+N012_TOL	0.1228250336931952	0.0	0.3214541231699867	0.0346328332896108	0.368019335910823	0.1530686739363841
+N012_FU1	0.2277267699809669	0.0	0.4080577943723182	0.0387910702970685	0.2593941679144801	0.0660301974351661
+N022_TOL	0.0562489751699501	0.0	0.3277669889241583	0.0996866230976701	0.2704691340120108	0.2458282787962105
+N022_FU1	0.0460354385439594	0.0400477823546322	0.1350763284630527	0.1855160870948248	0.2491048682300341	0.3442194953134964
+N043_TOL	0.1274049606263132	0.0624478633974271	0.1393031832235898	0.109096197455775	0.5617477952968947	0.0
+N043_FU1	0.1042372334057664	0.0	0.4548068226691464	0.0841850237153319	0.24846600834138	0.1083049118683751
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot3/out_fractions/CIBERSORTx_Adjusted.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot3/out_fractions/CIBERSORTx_Adjusted.txt
new file mode 100644
index 0000000000000000000000000000000000000000..20e4fdc99c5f532d8966eec97491de99281b158f
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot3/out_fractions/CIBERSORTx_Adjusted.txt
@@ -0,0 +1,26 @@
+Mixture	B cell	DC	Monocyte	NK cell	Other	T cell	P-value	Correlation	RMSE
+N064_TOL	0.07955957693007071	0.10950640990319009	0.22620946895912383	0.00000000000000000	0.03268137203396550	0.55204317217364995	9999.00000000000000000	0.44021017871923951	0.93962835369472331
+N064_FU1	0.07779063162870069	0.00000000000000000	0.25662780318979966	0.10985470298885744	0.11224039446776179	0.44348646772488032	9999.00000000000000000	0.48127267599523554	0.88858325320247944
+N032_AC	0.12430092701668817	0.14868141525112077	0.12725312843800393	0.00000000000000000	0.25464555493102264	0.34511897436316430	9999.00000000000000000	0.70706980573697076	0.70906126150230420
+N055_AC	0.17295123042819030	0.02969163413584719	0.30575149065666563	0.08723669631686010	0.28288465083372377	0.12148429762871291	9999.00000000000000000	0.44805919896933877	0.94211772898676693
+N136_TOL	0.08394795686025841	0.00000000000000000	0.33940534896043995	0.05807039866940741	0.45272000729010231	0.06585628821979195	9999.00000000000000000	0.80402383165751956	0.67982662557094198
+N136_FU1	0.12040665330297395	0.00000000000000000	0.43976018837999420	0.01072937576735808	0.27133569647967909	0.15776808606999471	9999.00000000000000000	0.83161831186818069	0.56717060065399894
+N138_TOL	0.09865151869087438	0.03481215136416387	0.27429276913091427	0.03548020292532045	0.52750824489108217	0.02925511299764491	9999.00000000000000000	0.60195387482651941	1.06436257150003688
+N138_FU1	0.08690080418490222	0.10666736753093108	0.27302053443249863	0.03358779402483635	0.49172862920486887	0.00809487062196294	9999.00000000000000000	0.72942728018047109	0.84665042457634199
+N128_BC	0.10703110231153254	0.13879970235068190	0.27632306751794039	0.00000000000000000	0.20686653984334477	0.27097958797650057	9999.00000000000000000	0.59204559233636234	0.80650411192043703
+N128_AC	0.10071284398915437	0.22692085673510656	0.23324125579507560	0.00966693317418733	0.16049032019487294	0.26896779011160316	9999.00000000000000000	0.57906643087796206	0.82421378274774670
+N129_BC	0.11850006827755222	0.15649397455631178	0.22719989301852020	0.02818165557233581	0.20688260577798992	0.26274180279728998	9999.00000000000000000	0.70664453803984317	0.72278776374687237
+N129_AC	0.08046662609607566	0.13771602753645362	0.19003519414657294	0.08982071356856193	0.24291327733545884	0.25904816131687708	9999.00000000000000000	0.63284273223844512	0.77419290231164339
+N158_AC	0.11684068642855626	0.09650264485203519	0.16610143050891263	0.02029376305406254	0.46037626367139139	0.13988521148504193	9999.00000000000000000	0.93585457278139605	0.40852056214706517
+N159_BC	0.07871569234412940	0.02202368506387320	0.15718267489176663	0.00000000000000000	0.31898641311523845	0.42309153458499232	9999.00000000000000000	0.95204816010756277	0.34714712387855778
+N002_TOL	0.08130750657061041	0.21760753249459175	0.13976018612054042	0.01201867508000486	0.19314871108469675	0.35615738864955576	9999.00000000000000000	0.56252876237261695	0.82789278004957556
+N002_FU1	0.05354550170497505	0.23581285226800552	0.10343055885905771	0.04501035910791457	0.35192495893942688	0.21027576912062029	9999.00000000000000000	0.67704735786996695	0.76706969053241425
+N005_BC	0.06773731075821154	0.08146520179782921	0.18318290453092137	0.06490087717642258	0.44047970190428881	0.16223400383232653	9999.00000000000000000	0.78804485768562960	0.68897696056394497
+N005_AC	0.02730054855237360	0.08303525093842951	0.08862373263958893	0.15088458340144184	0.13244544242598444	0.51771044204218175	9999.00000000000000000	0.72107150823948807	0.77702056855545365
+N012_TOL	0.15196261278235954	0.00000000000000000	0.27945256587119643	0.05349271237376486	0.32944716010766456	0.18564494886501470	9999.00000000000000000	0.68702766676872307	0.74252631939777503
+N012_FU1	0.21503378431447520	0.00000000000000000	0.39531132549875675	0.04458222551046531	0.23776220084754440	0.10731046382875832	9999.00000000000000000	0.59002978834710962	0.80927977242216842
+N022_TOL	0.07179917768775221	0.00000000000000000	0.31451435887433743	0.09162973852969215	0.23098189472128833	0.29107483018692992	9999.00000000000000000	0.69937088815918091	0.71990068020048237
+N022_FU1	0.06315355094010004	0.02805764064603677	0.12964445354308168	0.16036347629195377	0.21078982825153947	0.40799105032728827	9999.00000000000000000	0.66498813526801026	0.75460745147517438
+N035_TOL	0.05147890372254461	0.06167362543098543	0.14221206566262878	0.07437954509871174	0.51558978538585554	0.15466607469927385	9999.00000000000000000	0.71365382923607845	0.89460601222082614
+N043_TOL	0.06802614434851946	0.09079767590640855	0.12127168607571914	0.09613770135204044	0.50147409841296553	0.12229269390434702	9999.00000000000000000	0.70750569701946009	0.88703538759561062
+N043_FU1	0.08051723839232709	0.00000000000000000	0.42270247877656714	0.06443304868443953	0.24252281939135592	0.18982441475531023	9999.00000000000000000	0.77533960811616909	0.64331253157554402
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot3/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot3/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7f196ec0c1543e5c9572ec8b32bbb7a7a7384b19
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot3/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
@@ -0,0 +1,2445 @@
+NAME	B cell	DC	Monocyte	NK cell	Other	T cell
+ENSG00000000460	3.97831522913073909	3.14889905323478070	3.54294205033540832	4.10915517772163685	2.21624908781318952	15.92388860256956207
+ENSG00000001561	4.34314131216850630	9.10128871471010115	3.48385494287132724	33.73009276741409934	4.13202886024025418	6.62821635945037535
+ENSG00000002587	23.18204607780901227	14.39985149212414228	1.97257342929390833	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000002745	8.31616204743198395	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000002933	1.00000000000000000	4.64694625695575514	55.30275177968221811	1.00000000000000000	3.45098039215685626	1.00000000000000000
+ENSG00000003249	10.16172881336487599	2.22622282355741197	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000003436	1.00000000000000000	7.14712055067340390	2.57133878064110499	1.00000000000000000	109.25329794847564813	1.00000000000000000
+ENSG00000004399	2.49790293588975221	10.17005608254167903	20.74415199160688417	21.98312428955128439	9.00090959403724789	3.68378343215327853
+ENSG00000004468	62.20141487769927835	20.15067875242684892	14.40534310816842734	172.79872732774919086	18.52797000972713448	21.05800745634473259
+ENSG00000004777	4.17636681311600011	1.00000000000000000	2.55569383945240158	10.53471258176344172	1.31142946122703452	4.34672021419008114
+ENSG00000004799	3.96033155713439422	3.84090909090909216	18.71985508940740672	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000004939	1.00000000000000000	1.00000000000000000	3.88092001068208559	2.63371998039535526	95.40918992585994829	1.00000000000000000
+ENSG00000005187	50.74135646775937403	1.60009601536246238	3.67968441203348950	2.46584579302256968	20.83634624451035222	14.21322632499542671
+ENSG00000005243	3.29885057471264043	1.00000000000000000	7.93673383459541704	22.98422141861477996	1.00000000000000000	4.97772474144789800
+ENSG00000005249	8.33796205157579706	49.85733930852353524	77.30203459657569454	12.84895758062797633	1949.74697758879710818	6.22247754334657088
+ENSG00000005471	20.89120008919321947	4.44222748713996562	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000005844	33.16792075068333645	26.37861558909493098	75.90309587251960011	188.15259228462821284	26.23165228866004028	108.19279919891963004
+ENSG00000005961	3.65614711217224775	5.35371303949066224	16.21673185643084736	1.00000000000000000	1065.46317228960197099	7.50348258013989611
+ENSG00000006432	10.11029304079734104	1.41094764526999317	2.49611011370436753	1.00000000000000000	1.00000000000000000	5.77634343767392444
+ENSG00000006530	17.80923441790130823	12.87332571725727703	15.20532417541423698	67.39336514825406255	8.37159723033532188	26.71022277808303613
+ENSG00000006534	1.00000000000000000	27.70273438189500581	60.85674405687474575	1.00000000000000000	2.74345866104743497	1.00000000000000000
+ENSG00000006555	2.93873594416440209	1.41094764526999228	3.14868929952728660	14.60788681057511695	2.13199003848766333	5.05158199706329114
+ENSG00000006607	106.17696660150126320	52.55520056175834043	21.28512513331076761	18.53225520708061680	8.12167026357685451	8.89435752877544772
+ENSG00000006638	2.59897665494084817	2.57728706624605852	2.18315191670610398	1.00000000000000000	219.74109874574594414	1.00000000000000000
+ENSG00000007062	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	24.03860938353101062	1.00000000000000000
+ENSG00000007237	34.45156578098948330	92.81154616747812724	210.96922592705368515	70.38583207813022113	8.52427632129444035	12.07533378284868597
+ENSG00000007264	5.60117012072024334	9.13092608614810786	8.12700634605460692	380.31193834620756888	28.96048928914187925	98.51948570257474103
+ENSG00000007312	463.12433862084492375	9.46981423606619899	27.56485937782134599	32.78287892417714744	5.49062762157072992	21.56652344227638096
+ENSG00000007350	1.00000000000000000	5.68743606213074759	8.78646738591513277	84.17884073301443948	2.46756677428823323	10.52922332777403192
+ENSG00000007402	1.00000000000000000	1.00000000000000000	3.76395798783859226	20.49224051442009653	1.47308165389346302	13.68584352154372930
+ENSG00000007516	12.05760501901623805	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	2.64581961816985256
+ENSG00000007545	14.05685415526823157	4.28410766677921551	16.66007105301370217	55.50604456676875742	9.17500821290724566	18.86049069586712434
+ENSG00000008083	125.26903579023836244	282.41350770789392755	924.17729429979101496	113.75410755912170657	104.34941160165716667	48.38476632717409132
+ENSG00000008277	1.00000000000000000	1.00000000000000000	1.00000000000000000	6.02502665100030033	2.61631351885341035	8.56035402648030974
+ENSG00000008394	1.00000000000000000	46.41110732454593091	67.90439219276484550	1.00000000000000000	16.86343695754984395	1.00000000000000000
+ENSG00000008516	1.00000000000000000	8.00756522253948688	17.83586379777749542	1.00000000000000000	1.64234326824255028	1.00000000000000000
+ENSG00000008517	72.08401147503651885	58.53616299140193036	74.79741489521194353	1021.73463927871978285	329.05817259727558621	1944.94773638523429327
+ENSG00000009694	1.00000000000000000	1.00000000000000000	1.00000000000000000	4.41763499658237269	3.22617987533393080	13.10580800020673387
+ENSG00000010278	31.64460064829127361	8.67627439549244173	29.43576646087559112	6.28541226215646098	544.95685458792513600	7.26697305201589572
+ENSG00000010327	1.00000000000000000	6.29786204032858876	72.81066996302354255	1.00000000000000000	5.93339911198817038	1.00000000000000000
+ENSG00000010610	1.00000000000000000	129.92082651474109412	122.67815451384942094	1.00000000000000000	19.38262708584045058	51.67033189675701976
+ENSG00000011105	1.00000000000000000	1.00000000000000000	1.00000000000000000	2.29065565307175678	112.64053441282386814	1.00000000000000000
+ENSG00000011422	7.72088557551116228	482.58317024033112830	1155.03840385706939742	21.30693311166466231	40.62052160596041261	5.41148526190862711
+ENSG00000011590	17.47726184903743984	1.98736176935229114	1.00000000000000000	2.53798831128882973	6.33234820383063024	2.34807225667296038
+ENSG00000011600	38.74160160206044168	1779.40343969001264668	3997.58216498291858443	1890.62923429446368573	173.57703538022050793	31.20596573043853184
+ENSG00000012124	204.72580441593831324	11.07416338006829903	12.38658817937975698	1.00000000000000000	2.79404377466811615	1.00000000000000000
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diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot3/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot3/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e52e2032a16c79ccce64c632dfc133eccc9fefc3
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/fewshot3/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
@@ -0,0 +1,6 @@
+B cell	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+DC	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+Monocyte	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+NK cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2
+Other	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2
+T cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1