diff --git a/.gitattributes b/.gitattributes index 0e557b2486f9958440c72c3500a7780e9cc47980..7278acf83fd96e6598252ff29b26ba43e76df162 100644 --- a/.gitattributes +++ b/.gitattributes @@ -230,3 +230,4 @@ paper-releases/pbisc-diffusion/updates/20261012T233237Z-figure-layout-todo/diffu paper-releases/pbisc-diffusion/updates/20261012T233237Z-figure-layout-todo/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/layout_preview_20261013/panels/Figure_4_layout.pdf filter=lfs diff=lfs merge=lfs -text paper-releases/pbisc-diffusion/updates/20261012T233237Z-figure-layout-todo/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/layout_preview_20261013/panels/Figure_5_layout.pdf filter=lfs diff=lfs merge=lfs -text paper-releases/pbisc-diffusion/updates/20261012T233237Z-figure-layout-todo/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/layout_preview_20261013/panels/Figure_6_layout.pdf filter=lfs diff=lfs merge=lfs -text +paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/EXPERIMENT_REUSE_INDEX.jsonl filter=lfs diff=lfs merge=lfs -text diff --git a/paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/AGENTS.md b/paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/AGENTS.md new file mode 100644 index 0000000000000000000000000000000000000000..bee3006bacfef6468115d6a66dd23b0c0cc6ef2c --- /dev/null +++ b/paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/AGENTS.md @@ -0,0 +1,55 @@ +# Model 8 PBISC-Diffusion paper maintenance + +This active Model 8 source and its experiments are part of the +`pbisc-diffusion` paper. At task start, read +`../../paper-release-20260928/maintenance/POLICY.md` along with this +directory's README and applicable parent instructions. + +At the end of each related task, follow that policy's versioned update +workflow for the exact source, experiment, checkpoint, or evidence assets that +changed. From the release root, use +`maintenance/update.py prepare --request FILE --id ID`, inspect the prepared +update, then run `maintenance/update.py publish ID --execute` and +`maintenance/update.py status` under the policy. Record a no-op or pending +status when no +asset changed or publication failed; never describe that as an upload. Do not +regenerate or alter the frozen 2026-09-28 release, its root manifests, or the +HF `paper-20260928` revision. Inference assets are location plus receipt by +default unless the task explicitly needs their payload. + +The private dataset must stay private. Include datalake, VAE, or Model 7 assets +only with exact evidence that they are dependencies of this diffusion paper. +The parent host GPU safety rules still apply. + +## Reuse existing experiments before starting compute + +User instruction, 2026-10-13: avoid repeating completed Model 8 experiments. +Start with `EXPERIMENT_INDEX.md` and query `EXPERIMENT_REUSE_INDEX.jsonl` using +`scripts/audit_experiment_reuse.py`. A missing output in a new plan directory +does not establish that an experiment has never been done. + +- Before training, generation, or deconvolution, compare existing source + receipts: base checkpoint, exact support/test sample and donor IDs, data and + condition content, measured genes/masks, validation access, optimization and + selection schedule, seed, and implementation/configuration provenance. +- Registry matches are candidates, not automatic equivalence. Verify payloads + and write truthful adoption evidence. Preserve original execution provenance; + do not relabel an old artifact as newly executed strict work. +- Changing a sampling seed or receipt format does not justify retraining an + existing model. Reuse verified checkpoints and run only the genuinely changed + operation. Missing native receipts call for adoption, not automatic reruns. +- Record the candidate sources and the exact scientific reason for any new + operation before launching it. Unknown provenance requires investigation, + not a conclusion that new compute is necessary. Consult newer live receipts + when the inventory predates an ongoing campaign. +- Distinguish existing results, CPU-only statistics/plotting, a new protocol + update, and missing data in plans and decks. Never label all four as an empty + TODO. Archive/backup copies and tensor-identical models are not independent + experimental evidence. + +The 2026-10-13 audit and confirmed duplicate-training proof are in +`plans/paper_figures_strictpairs_20261012/audit_reuse_20261013/`. +Sepsis deconvolution uses verified historical draw-specific outputs through +`tools/adopt_deconv_legacy.py` in that plan; its methods must not be rerun as a +fallback when adoption validation fails. Current results review: +`presentations/2026-09-30--paper-summary--r00/PBISC-Diffusion_results_review_20261013.pdf`. diff --git a/paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/EXPERIMENT_INDEX.md b/paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/EXPERIMENT_INDEX.md new file mode 100644 index 0000000000000000000000000000000000000000..909744419e118b7ba3e2153bf6b42ce9700c0652 --- /dev/null +++ b/paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/EXPERIMENT_INDEX.md @@ -0,0 +1,202 @@ +# Model 8 experiment and reuse index + +Observed on `spark-fa6b` at 2026-10-13T00:45:19.744801+00:00. + +Before any training, inference, annotation, scoring or figure rebuild, search this index and the JSONL registry. An absent file under a new plan is not evidence that the result does not exist elsewhere. + +## Required reuse lookup + +1. Find the experiment family below; read its existing README/protocol, run records, generation receipts, score tables and deck source map. +2. Check the current cross-host model/inference catalogs. Resolve actual host and path; inspect completed outputs before scheduling compute. +3. Compare checkpoint, exact train/validation/test sample IDs, gene order/masks, conditioning/depth, selected/fixed steps, seed, generated cell budget, sampling/readout, scSemi HVG/assignment, and scoring reference. +4. Classify the request: existing figure; CPU redraw/reanalysis; existing generated output awaiting scoring; or scientifically different new GPU work. Record the exact mismatch that requires new work. +5. Unknown fields block an exact-match claim, not historical display with an accurate protocol label. Candidate matches never authorize deleting or overwriting outputs. +6. Follow host memory/GPU policies for any later launch. This audit does not launch anything or verify live process state. + +```bash +python scripts/audit_experiment_reuse.py --query 'immicro/fewshot_n5' --limit 20 +python scripts/audit_experiment_reuse.py --query 'refcal' --kind array_payload --limit 20 +python scripts/audit_experiment_reuse.py --check-training-request /path/to/training-request.json +python scripts/audit_experiment_reuse.py --refresh +``` + +The training-request JSON uses `checkpoint_sha256`, `train_samples` (ID list), `validation_samples` (ID list, empty when none), `mode`, `lora_rank`, `learning_rate`, `fixed_steps`, `training_seed`, `condition_sha256`, `training_data_sha256`, `gene_order` (ordered gene-ID list), `batch_size`, `warmup`, `ema_decay`, `training_code_sha256`, and `effective_config_sha256`; `cohort` is an optional filter. The check reports `reuse_candidate`, unknown fields, or a different protocol. A complete match has `metadata_match=true`, never an exact-reuse verdict. A generation/sampling seed is ignored for checkpoint-training comparison. Verified adoption still requires all scientifically relevant inputs/configuration/code, current checkpoint/output receipts, and payload identity or equivalence; fields outside this schema also require review. + +## Evidence already available + +- **Pretraining and checkpoint parents:** [runs](runs); [plans/full_recipe_allcells_6k_broad_20260909](plans/full_recipe_allcells_6k_broad_20260909); [plans/floor01_campaign_20260923](plans/floor01_campaign_20260923). Use RUN_STATUS/history/config and checkpoint receipts together; payload presence alone is not completion. +- **Architecture and gene-panel ablations:** [plans/arch_ablation_6k_20260913](plans/arch_ablation_6k_20260913); [plans/gene_panel_scaling_20260908](plans/gene_panel_scaling_20260908); [analysis/floor01_benchmark_20260923](analysis/floor01_benchmark_20260923); [presentations/2026-09-30--paper-summary--r00/data/sec03_width_bench.csv](presentations/2026-09-30--paper-summary--r00/data/sec03_width_bench.csv); [presentations/2026-09-30--paper-summary--r00/data/sec03_panel_bench.csv](presentations/2026-09-30--paper-summary--r00/data/sec03_panel_bench.csv). Existing width/context/gene-panel results precede the strict-pair campaign. +- **Canonical paired training, exact-five historical draws and learning curves:** [plans/paired_finetune_intradataset_20260927](plans/paired_finetune_intradataset_20260927). ImMicro fewshot_n5: five samples, no inner validation, fixed3000, five draws. Historical lora_n curves: n+7 validation samples and early stopping. Do not conflate these. +- **scSemiProfiler and matched-budget comparisons:** [plans/paired_finetune_intradataset_20260927/scsemi](plans/paired_finetune_intradataset_20260927/scsemi); [plans/immicro_scsemi_comparison_20260927](plans/immicro_scsemi_comparison_20260927); [analysis/scsemi_benchmark_diffusion_20260913](analysis/scsemi_benchmark_diffusion_20260913). Check representative IDs, gene axis, hvset, seed index, assignment and exports before reusing training. +- **Cross-cohort transfer and from-scratch controls:** [plans/paired_crosscohort_20261002](plans/paired_crosscohort_20261002). LOCO and same-cohort adaptation are different estimands; retain support-cohort lineage. +- **Real-reference UMAP, external calibration and composition:** [plans/utility_studies_final6k_20260925](plans/utility_studies_final6k_20260925). Existing ImMicro real-reference UMAP, AIFI reference-calibration output and composition tables are reusable inputs; LoRA/scSemi panels require method-specific projection. +- **Deconvolution:** [plans/bayesprism_paired_20261006](plans/bayesprism_paired_20261006); [plans/utility_studies_final6k_20260925/deconv](plans/utility_studies_final6k_20260925/deconv). Match support pairs and supported endpoints; deconvolution is not cell generation. +- **Rare-state screen and Behcet diagnostic:** [plans/rare_states_paired_20261008](plans/rare_states_paired_20261008); [plans/rare_states_screen_20261004](plans/rare_states_screen_20261004); [plans/behcet_c1q_lora3_20261004](plans/behcet_c1q_lora3_20261004). Retain zero draws, donor dependence, marker rules and the descriptive status of Behcet. +- **Bulk-only generation and research:** [plans/bulkonly_lora5_20261006](plans/bulkonly_lora5_20261006); [plans/bulkonly_lora5_k4000_20261006](plans/bulkonly_lora5_k4000_20261006). Existing generated arrays and analyses are candidates for CPU reanalysis, not grounds to repeat inference. +- **76-slide evidence deck:** [presentations/2026-09-30--paper-summary--r00](presentations/2026-09-30--paper-summary--r00). slides_spec.json maps each slide to figures, source CSV and full provenance notes. Slides23–34 contain healthy metrics/curves/runtime. +- **Strict-pair protocol and new manuscript layouts:** [plans/paper_figures_strictpairs_20261012](plans/paper_figures_strictpairs_20261012). New fold support sets differ from historical draws/curves. Check generated outputs and receipts before considering missing scoring a reason to regenerate. +- **Current cross-host archive catalogs:** [../../paper-release-20260928/CURRENT_MODEL_INDEX.csv](../../paper-release-20260928/CURRENT_MODEL_INDEX.csv); [../../paper-release-20260928/CURRENT_INFERENCE_LOCATIONS.csv](../../paper-release-20260928/CURRENT_INFERENCE_LOCATIONS.csv). Resolve canonical host and location from these catalogs; identical paths can exist on both hosts. Catalog observations are not a live process check. +- **Separately verified duplicate-training evidence:** [plans/paper_figures_strictpairs_20261012/audit_reuse_20261013/CONFIRMED_DUPLICATE_TRAINING.json](plans/paper_figures_strictpairs_20261012/audit_reuse_20261013/CONFIRMED_DUPLICATE_TRAINING.json). Read the coordinator's exact scoped payload comparison and provenance. This audit links that evidence; generic metadata signatures do not inherit its confirmed status. + +## Coverage and limits + +- Files with filesystem metadata: **66,604** across **138** families. +- JSON documents parsed under 16,777,216 bytes: **17,919**. +- JSON over the cap: **1**; invalid/unreadable JSON: **1**. +- JSON with unrecognized schema or no extracted scientific fields: **4,050**. These remain indexed with top-level keys. +- Excluded subtrees: **110**; directory symlinks not followed: **323**; traversal errors: **0**. +- Candidate signature groups: **120**; identical small scientific-metadata groups: **197**. Neither is a deletion list. +- Primary working-tree file observations: **63,947**; inherited archive/backup/snapshot files: **2,657**. File or metadata counts are not independent experiment counts. +- Existing cross-host archive location records indexed: **2,109**; these preserve declared source host/path and receipt pointers without claiming live verification. +- Separately confirmed duplicate-training aliases: **5**; proof status `validated_report_structure`. Their RUN/checkpoint records map to the original model, retain distinct serialization hashes, and are not independent model evidence. Generated outputs are not classified as duplicates. +- Large array/checkpoint contents were not inspected, loaded or hashed. Apparent bytes can double-count hardlinks and copies. +- No remote host or live process query is performed. `recorded_running_or_pending` is historical evidence, not current GPU status. +- CSV headers and JSONL/log/text prefixes are bounded samples. JSON records over the cap and excluded subtree descendants are explicitly uninspected. +- Files may change during this point-in-time inventory. Refresh before a new execution decision. + +Detailed machine-readable records: [EXPERIMENT_REUSE_INDEX.jsonl](EXPERIMENT_REUSE_INDEX.jsonl). Counts, exclusions, family evidence, and candidate groups: [EXPERIMENT_REUSE_COVERAGE.json](EXPERIMENT_REUSE_COVERAGE.json). + +## Every inventoried family + +State columns count records, not completed experiments; multiple states within one family are expected. + +| Family | Files | Inherited copies | Figures | Tables | Arrays/checkpoints | Recorded completed/budget reached | Recorded running/pending | Recorded failed/incomplete | +|---|---:|---:|---:|---:|---:|---:|---:|---:| +| [analysis](analysis) | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | +| [analysis/additive_2k_e1_e2_20260910](analysis/additive_2k_e1_e2_20260910) | 15 | 0 | 4 | 1 | 0 | 2 | 0 | 0 | +| [analysis/archive](analysis/archive) | 5 | 5 | 2 | 1 | 1 | 0 | 0 | 0 | +| [analysis/c1q_ifn_validation_20260926T2314](analysis/c1q_ifn_validation_20260926T2314) | 50 | 0 | 8 | 20 | 1 | 0 | 0 | 0 | +| [analysis/diffusion_paper_after_2k_e3_20260910_analysis_unknown_v1](analysis/diffusion_paper_after_2k_e3_20260910_analysis_unknown_v1) | 546 | 0 | 8 | 465 | 21 | 1 | 0 | 0 | +| [analysis/diffusion_paper_after_2k_e3_20260910_generation_v1](analysis/diffusion_paper_after_2k_e3_20260910_generation_v1) | 235 | 0 | 0 | 0 | 225 | 5 | 0 | 0 | +| [analysis/diffusion_trajectory_20260917](analysis/diffusion_trajectory_20260917) | 49 | 0 | 11 | 2 | 1 | 2 | 0 | 0 | +| [analysis/diffusion_trajectory_biology_20260917](analysis/diffusion_trajectory_biology_20260917) | 258 | 0 | 104 | 7 | 6 | 16 | 0 | 0 | +| [analysis/floor01_benchmark_20260923](analysis/floor01_benchmark_20260923) | 115 | 0 | 0 | 36 | 38 | 0 | 0 | 0 | +| [analysis/gse135779_s0_2000hvg_deg_dualprotocol_seed20260907](analysis/gse135779_s0_2000hvg_deg_dualprotocol_seed20260907) | 113 | 0 | 10 | 36 | 47 | 2 | 0 | 0 | +| [analysis/gse135779_s0_2000hvg_deg_dualprotocol_smoke_seed20260907](analysis/gse135779_s0_2000hvg_deg_dualprotocol_smoke_seed20260907) | 5 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | +| [analysis/proportion_k1000_20260910_analysis_v1](analysis/proportion_k1000_20260910_analysis_v1) | 16 | 0 | 4 | 7 | 0 | 1 | 0 | 0 | +| [analysis/proportion_k1000_20260910_generation_v1](analysis/proportion_k1000_20260910_generation_v1) | 52 | 0 | 0 | 0 | 44 | 4 | 0 | 0 | +| [analysis/s0_1000hvg_val48x64_ddim50_collection](analysis/s0_1000hvg_val48x64_ddim50_collection) | 2 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | +| [analysis/s0_1000hvg_val48x64_ddim50_context](analysis/s0_1000hvg_val48x64_ddim50_context) | 4 | 0 | 0 | 2 | 1 | 1 | 0 | 0 | +| [analysis/s0_1000hvg_val48x64_ddim50_reference_umap](analysis/s0_1000hvg_val48x64_ddim50_reference_umap) | 9 | 0 | 2 | 5 | 1 | 1 | 0 | 0 | +| [analysis/s0_2000hvg_model_explainer_site](analysis/s0_2000hvg_model_explainer_site) | 165 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | +| [analysis/s0_2000hvg_val48x64_ddim50_analysis_bundle](analysis/s0_2000hvg_val48x64_ddim50_analysis_bundle) | 18 | 0 | 10 | 3 | 0 | 0 | 1 | 0 | +| [analysis/s0_2000hvg_val48x64_ddim50_analysis_bundle_globalprime_v2](analysis/s0_2000hvg_val48x64_ddim50_analysis_bundle_globalprime_v2) | 20 | 0 | 10 | 3 | 0 | 2 | 0 | 0 | +| [analysis/s0_2000hvg_val48x64_ddim50_collection](analysis/s0_2000hvg_val48x64_ddim50_collection) | 3 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | +| [analysis/s0_2000hvg_val48x64_ddim50_context](analysis/s0_2000hvg_val48x64_ddim50_context) | 4 | 0 | 0 | 2 | 1 | 1 | 0 | 0 | +| [analysis/s0_2000hvg_val48x64_ddim50_context_globalprime_v2](analysis/s0_2000hvg_val48x64_ddim50_context_globalprime_v2) | 4 | 0 | 0 | 2 | 1 | 1 | 0 | 0 | +| [analysis/s0_2000hvg_val48x64_ddim50_reference_umap](analysis/s0_2000hvg_val48x64_ddim50_reference_umap) | 9 | 0 | 2 | 5 | 1 | 1 | 0 | 0 | +| [analysis/s0_2000hvg_val48x64_ddim50_reference_umap_globalprime_v2](analysis/s0_2000hvg_val48x64_ddim50_reference_umap_globalprime_v2) | 9 | 0 | 2 | 5 | 1 | 1 | 0 | 0 | +| [analysis/s0_2k_6k_nearest_cells_20260910](analysis/s0_2k_6k_nearest_cells_20260910) | 39 | 3 | 4 | 22 | 1 | 1 | 0 | 0 | +| [analysis/s0_2k_6k_raw_counts_20260910](analysis/s0_2k_6k_raw_counts_20260910) | 70 | 0 | 4 | 55 | 0 | 1 | 0 | 0 | +| [analysis/s0_2k_vs_6k_epoch1_umap_20260909](analysis/s0_2k_vs_6k_epoch1_umap_20260909) | 10 | 0 | 6 | 1 | 1 | 1 | 0 | 0 | +| [analysis/s0_6k_epoch1_val48x64_ddim50_collection_20260909](analysis/s0_6k_epoch1_val48x64_ddim50_collection_20260909) | 4 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | +| [analysis/scsemi_benchmark_diffusion_20260913](analysis/scsemi_benchmark_diffusion_20260913) | 5844 | 0 | 0 | 3028 | 912 | 3 | 0 | 0 | +| [analysis/sdd_gene_width_feasibility_seed20260627_v3](analysis/sdd_gene_width_feasibility_seed20260627_v3) | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | +| [analysis/umap_smoke_v4_test8x64_s20](analysis/umap_smoke_v4_test8x64_s20) | 5 | 0 | 2 | 1 | 1 | 0 | 0 | 0 | +| [artifacts/diffusion_paper_native_reference_20260910](artifacts/diffusion_paper_native_reference_20260910) | 2 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | +| [artifacts/gse135779_s0_2000hvg_pediatric44_seed20260907](artifacts/gse135779_s0_2000hvg_pediatric44_seed20260907) | 18 | 0 | 0 | 4 | 10 | 1 | 0 | 0 | +| [artifacts/gse135779_scsemi_split_target42_20260913](artifacts/gse135779_scsemi_split_target42_20260913) | 6 | 0 | 0 | 2 | 1 | 1 | 0 | 0 | +| [artifacts/hvg_1000_train64x64_seed20260627](artifacts/hvg_1000_train64x64_seed20260627) | 3 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | +| [artifacts/hvg_2000_train256x128_seed20260627](artifacts/hvg_2000_train256x128_seed20260627) | 3 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | +| [artifacts/hvg_3000_train256x128_seed20260627](artifacts/hvg_3000_train256x128_seed20260627) | 3 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | +| [artifacts/panel_broad_mustkeep_seed20260627_v1](artifacts/panel_broad_mustkeep_seed20260627_v1) | 4 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | +| [artifacts/panel_full_20097_20260924](artifacts/panel_full_20097_20260924) | 3 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | +| [artifacts/panel_ladder_1m_20260922](artifacts/panel_ladder_1m_20260922) | 46 | 0 | 0 | 14 | 18 | 0 | 0 | 0 | +| [artifacts/panel_ladder_floor01_1m_20260923](artifacts/panel_ladder_floor01_1m_20260923) | 23 | 0 | 0 | 7 | 9 | 0 | 0 | 0 | +| [artifacts/panel_ladder_floor01_1m_20260924_r2](artifacts/panel_ladder_floor01_1m_20260924_r2) | 26 | 0 | 0 | 8 | 10 | 0 | 0 | 0 | +| [artifacts/panel_ladder_train256x128_seed20260627_v2](artifacts/panel_ladder_train256x128_seed20260627_v2) | 18 | 0 | 0 | 7 | 5 | 0 | 0 | 0 | +| [artifacts/panel_ladder_train256x128_seed20260627_v3](artifacts/panel_ladder_train256x128_seed20260627_v3) | 24 | 0 | 0 | 7 | 9 | 0 | 0 | 0 | +| [artifacts/proportion_classifier_k1000_20260910_v1](artifacts/proportion_classifier_k1000_20260910_v1) | 7 | 0 | 0 | 4 | 1 | 2 | 0 | 0 | +| [artifacts/proportion_reference_k1000_20260910_v1](artifacts/proportion_reference_k1000_20260910_v1) | 13 | 0 | 0 | 5 | 5 | 1 | 0 | 0 | +| [configs](configs) | 13 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | +| [logs](logs) | 23 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | +| [plans/additive_2k_allcells_20260909](plans/additive_2k_allcells_20260909) | 70 | 28 | 0 | 1 | 0 | 3 | 3 | 2 | +| [plans/aifi_scanvi_rebuild_20260916](plans/aifi_scanvi_rebuild_20260916) | 648 | 0 | 0 | 47 | 185 | 6 | 0 | 0 | +| [plans/arch_ablation_6k_20260913](plans/arch_ablation_6k_20260913) | 154 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | +| [plans/bayesprism_paired_20261006](plans/bayesprism_paired_20261006) | 3217 | 0 | 178 | 473 | 12 | 0 | 0 | 0 | +| [plans/behcet_c1q_lora3_20261004](plans/behcet_c1q_lora3_20261004) | 266 | 0 | 0 | 132 | 34 | 2 | 0 | 0 | +| [plans/behcet_c1q_repro_20260921](plans/behcet_c1q_repro_20260921) | 86 | 0 | 0 | 35 | 9 | 0 | 0 | 0 | +| [plans/behcet_pair_recovery_20261004](plans/behcet_pair_recovery_20261004) | 39 | 0 | 0 | 22 | 0 | 0 | 0 | 0 | +| [plans/broad_shape_smoke](plans/broad_shape_smoke) | 4 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | +| [plans/bulkonly_lora5_20261006](plans/bulkonly_lora5_20261006) | 5384 | 4 | 57 | 2018 | 392 | 5 | 0 | 0 | +| 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