diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/giroux2022/fewshot4/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/giroux2022/fewshot4/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
new file mode 100644
index 0000000000000000000000000000000000000000..72b4fa5ea4a0d267306143efa9396dfaa002a542
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/giroux2022/fewshot4/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
@@ -0,0 +1,2179 @@
+NAME	B cell	DC	Monocyte	NK cell	Other	T cell
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+ENSG00000250510	1.00000000000000000	5.40452275584534725	10.70148358023373092	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000250722	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	3.92568753657108038	1.00000000000000000
+ENSG00000254415	1.00000000000000000	8.73052418014171749	21.76020086556811606	1.00000000000000000	4.01386377335742139	1.00000000000000000
+ENSG00000254470	10.73891092311640350	9.11899302366068909	56.60525666478743290	6.48640257052256253	5.50450450450448248	10.50570342205321950
+ENSG00000254598	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	6.72452925917327970
+ENSG00000254709	1346.93231337387555868	9.66925086125093891	7.24820183745442304	55.42355414091071708	72.38978451522027058	10.95617846544880081
+ENSG00000254726	5.77020227295478616	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000255398	1.00000000000000000	1.00000000000000000	6.04866182084223691	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000255561	2.13869278068777113	1.73632280391723559	1.00000000000000000	3.51762336354481864	9.81372963824835054	3.16825672159583638
+ENSG00000255819	1.00000000000000000	1.42506163393692042	1.00000000000000000	2.13250283125708018	1.00000000000000000	6.18350321113294399
+ENSG00000255833	1.00000000000000000	21.09315335175503492	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000256188	1.00000000000000000	1.00000000000000000	13.63615988480117203	1.00000000000000000	8.87401574803145721	1.00000000000000000
+ENSG00000256660	1.00000000000000000	2.70701656988177852	14.57744546358462401	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000257017	1.00000000000000000	2.09098843552258096	17.87379296797066530	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000257335	1.00000000000000000	4.65954519172355397	1.85207907293796792	14.06743441825315699	1.00000000000000000	1.00000000000000000
+ENSG00000258405	4.01568154402896127	1.00000000000000000	1.00000000000000000	17.21080331024049670	2.87546886721679540	3.68672756582483085
+ENSG00000258818	1.00000000000000000	9.89330591204853782	9.65314320985780761	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000259120	1.00000000000000000	8.85933005907086013	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000259207	1.00000000000000000	1.62250996015936200	1.97238428626993656	1.00000000000000000	49.55246552394294213	1.00000000000000000
+ENSG00000259330	1.00000000000000000	1.62250996015936111	23.52879796766394449	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000266714	18.87070656141440139	52.06916713594927870	80.52197894619655472	13.01095581576716853	10.53975123159408511	10.46096000025437078
+ENSG00000266964	23.96078457793479188	4.69444380433866737	3.38724393597229989	4.01568154402893640	11.10443694844646778	16.73088638115350690
+ENSG00000269404	89.00072038903607563	71.87662661311898660	1.98154691794267723	2.29299198344970501	13.56281407035169373	1.00000000000000000
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/giroux2022/fewshot4/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/giroux2022/fewshot4/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e52e2032a16c79ccce64c632dfc133eccc9fefc3
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/giroux2022/fewshot4/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
@@ -0,0 +1,6 @@
+B cell	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+DC	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+Monocyte	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+NK cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2
+Other	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2
+T cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/giroux2022/fewshot4/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/giroux2022/fewshot4/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt
new file mode 100644
index 0000000000000000000000000000000000000000..99bb1947a964390a9dea8c0dba783456fc2b4d0a
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/giroux2022/fewshot4/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt
@@ -0,0 +1,2179 @@
+GeneSymbol	B cell	DC	Monocyte	NK cell	Other	T cell
+ENSG00000000971	0.00000000000000000	0.00000000000000000	2.39281660916902661	0.62924502694951190	13.83733610202269304	29.02920622972046161
+ENSG00000001561	36.02290931488357728	0.00000000000000000	0.00000000000000000	101.58264087038195100	32.63414304316942349	36.30721792754749089
+ENSG00000002587	10.54085379519536403	5.66670465745672569	0.38393834286911827	0.04057067219489910	0.00000000000000000	0.00000000000000000
+ENSG00000002745	3.55156177157539243	0.00000000000000000	0.00000000000000000	0.08335145143335673	0.44716050061354723	0.00000000000000000
+ENSG00000002933	0.68626565074931933	9.46748192607598504	88.68802292375872298	0.00000000000000000	41.30902545172127560	0.18116469647445546
+ENSG00000003249	18.72742516346429653	0.00000000000000000	0.39920955770712008	1.42973676551249929	0.00000000000000000	0.18111101477166144
+ENSG00000003436	0.00000000000000000	5.11510518292218652	0.27381108317458164	0.00000000000000000	25.58373043153679305	0.25704885122507787
+ENSG00000004399	6.94618396421708084	46.88942071030893288	149.27333920414170620	28.74498650684116896	76.34054724570084716	68.65647224045694941
+ENSG00000004468	98.22879928535401461	0.00000000000000000	27.21078081813910643	163.88326423496079087	28.67738702313182131	18.41033316373975737
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+ENSG00000005187	25.46711464883549070	0.00000000000000000	0.00000000000000000	3.54411516841947449	11.60396015385854085	1.04576650158352780
+ENSG00000005238	4.02570856641208774	36.75904304347682938	90.95728317188947187	22.59177672210594778	17.93770387639645847	12.57749179612952162
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+ENSG00000006534	19.90146945179856530	28.87109415048174199	102.59566127726209572	22.54963037351872046	47.91177455391382978	6.36026175288466256
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+ENSG00000006607	40.86882092754339624	31.39715306541707207	22.19822907533887246	5.74031395713137815	5.69507451150320154	8.12812074867768430
+ENSG00000006638	3.85961181451922464	0.00000000000000000	6.73344518015370141	4.25112815792844767	17.99681421253780655	0.88095470297957346
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+ENSG00000007264	6.76473306930809049	2.24585175089956124	5.21835366682579416	202.37908577812933686	33.31692026456394018	61.23709175184032460
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+ENSG00000007350	0.00000000000000000	0.00000000000000000	3.96040476309104816	34.53901985403144437	4.02189321444326886	12.41201950027071810
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+ENSG00000008277	4.14152543331245759	13.15548425375618535	0.00000000000000000	1.52643600331284390	13.62027672883523266	21.28891265314848980
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+ENSG00000008517	91.47233032139729403	0.00000000000000000	123.03342865694082775	442.70560912616167570	505.16570319182062576	1098.36481029430342460
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+ENSG00000011600	118.36100164377249655	1199.06150860836692118	2132.12727796616582054	937.81084317649663262	382.05809751472537528	151.69889975751857492
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+ENSG00000012223	0.00000000000000000	0.00000000000000000	0.00000000000000000	1.61544997376434640	20.54938575419253510	1.46146151765196408
+ENSG00000012232	11.80090013911450164	19.33444790827669024	27.55108111766133661	24.20453315414712492	31.98340185670081937	7.43545193867480858
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+ENSG00000013725	34.65508129773351698	10.41695004906353716	7.02154713372176609	39.82898678251711999	235.45797572185239233	269.92990763489842720
+ENSG00000014257	4.79612626861971236	44.69172810861822143	42.40576734389636471	3.90276906868756379	19.65157992968320499	5.75443039589160321
+ENSG00000015532	9.31263394394114385	3.73870683103763524	1.01626358204921940	26.10604923253927367	16.67248316997340751	15.23160823284508147
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+ENSG00000019102	0.00000000000000000	0.00000000000000000	0.88990221486967314	0.00000000000000000	0.00000000000000000	2.65255645132545448
+ENSG00000019169	3.37259450608250066	16.76285829473595257	49.55690025652936015	1.59998416350641604	24.48744786889416147	0.20100232033391940
+ENSG00000019582	15705.73784614366377355	13800.01586919941291853	3939.53521731243336035	1779.44374319141206797	1555.89792652104893023	907.86403687803021967
+ENSG00000019991	4.96484895512587254	16.34240806687352077	29.13138731419725502	3.75823219794080998	0.98635775438665740	1.15694588092153294
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+ENSG00000020633	66.87183045779966051	87.01305234808071987	158.39450279136377731	338.53821503346426880	92.48836548943808111	95.40294944670615962
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+ENSG00000021488	2.40711305196315672	1.09645729147727766	0.07792109097837849	0.00000000000000000	0.30958307225370663	0.00000000000000000
+ENSG00000021762	4.10007931592929786	22.67886243995950579	18.95036182734946451	154.41308515593456718	13.61795620202898149	21.37650749259638516
+ENSG00000022267	3.13023080577259494	2.69975620123667071	8.65435824926956343	7.90827015202373751	124.65964206296654027	22.58496247882927577
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+ENSG00000023445	370.71609099691988831	46.49267725183788258	6.13886411458344750	71.72627769831530031	208.19378990359138015	153.55155711340739799
+ENSG00000025039	2.22089072872200255	8.90458884980422916	20.05677781921180625	6.45847841292925118	0.00000000000000000	6.36973600472477575
+ENSG00000025156	40.49669775663863902	0.00000000000000000	16.43217530506856505	18.74294634622165034	40.71861042541091535	75.23257767476199831
+ENSG00000025708	71.27596890090286763	713.99616517295055473	1178.29465280606814304	29.00423585670651505	195.81650959646017895	52.13279382492493141
+ENSG00000026559	12.23062198905500075	0.83180084302882651	0.00000000000000000	0.00000000000000000	0.04764785573601770	0.06251709029957503
+ENSG00000026751	35.13902266024138754	79.73409551461703870	16.03167895952413957	187.25312988691638338	37.48043900478021584	53.21527550185653865
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+ENSG00000029534	11.77039606972123664	2.26230868186982281	3.29300724745137430	0.00000000000000000	19.70028034152171159	4.98031749441540850
+ENSG00000030419	36.62673123723508439	0.00000000000000000	0.00000000000000000	125.11557668123435860	72.93195531939946363	60.27778727607634579
+ENSG00000030582	262.82359673468732808	1593.72231441678150077	1293.53084745036517234	175.38507808328535020	197.74141654969272963	74.73036679967826501
+ENSG00000034053	0.00000000000000000	12.66989502684049462	0.00000000000000000	54.52555855753318781	53.28654336463424102	88.49287011208097908
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+ENSG00000035664	1.19772047174738194	10.06540224425930141	2.22730510314175945	8.96788261414690879	0.00000000000000000	4.50318107263441014
+ENSG00000035720	106.87424260872720083	11.69358686614453191	0.00000000000000000	8.49890522798657244	2.40957229031283093	7.62326073022098338
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+ENSG00000036448	0.00000000000000000	24.55629751683654760	3.05747507685518549	229.42405527515046515	0.00000000000000000	8.41933593055598983
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+ENSG00000038382	91.60208620526415757	97.97741449036668371	60.08905404533399519	19.93638758795218635	19.57941920211073850	6.94846318869713730
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+ENSG00000258405	3.80323029502407017	0.00000000000000000	0.00000000000000000	10.18704570919645569	1.27216567023942173	4.53203569319686572
+ENSG00000258818	3.01019991487744187	12.75156794207947009	18.52133440234974060	1.55936766346802069	0.00000000000000000	1.15845040448932890
+ENSG00000259120	0.00000000000000000	5.15786338805900169	0.00000000000000000	0.84535787205758628	0.00000000000000000	0.00000000000000000
+ENSG00000259207	0.82856954408287864	0.00000000000000000	21.89799655233543518	30.09565396586097563	80.88664850210287227	3.49781361935344615
+ENSG00000259330	2.74754408086944935	7.24159952682829289	63.41163640400210966	4.43071766799799871	2.45984410906536022	3.74345153418578036
+ENSG00000266714	50.67502381267478739	113.59086560670679944	174.37061527068738087	44.81346667434341668	27.92239111636990501	18.20647374028451537
+ENSG00000266964	8.34474750882347216	0.00000000000000000	0.00000000000000000	0.00000000000000000	3.36551111474116516	4.34717297973051586
+ENSG00000269404	49.71730593299420065	37.13174796054121174	4.69067039617997938	0.00000000000000000	3.74718910235782054	1.09365632388652489
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/giroux2022/fewshot4/out_hires/fractions_results.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/giroux2022/fewshot4/out_hires/fractions_results.txt
new file mode 100644
index 0000000000000000000000000000000000000000..591239e189717433698517bf90a46b4ce6c8481b
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/giroux2022/fewshot4/out_hires/fractions_results.txt
@@ -0,0 +1,11 @@
+Mixture	B cell	DC	Monocyte	NK cell	Other	T cell
+450905_d0	0.0	0.0	0.6039803468656931	0.0748944887644387	0.1015484212522318	0.2195767431176362
+450905_d14	0.0160468894658708	0.0734394616059827	0.3037380445781824	0.1166829430593768	0.2641347631750957	0.2259578981154913
+7085CA_d0	0.0285167953235857	0.1076239258104403	0.6038120992473299	0.1087095973014447	0.0296610718529246	0.1216765104642745
+7085CA_d7	0.0462915188332009	0.0769986095555994	0.1022945941454681	0.1915769803587016	0.2116548920904196	0.37118340501661
+7085CA_d14	0.0441095641623186	0.0400439357845624	0.1753520628410842	0.1856878029771354	0.2055779558668494	0.3492286783680496
+B85D75_d0	0.0131109093788321	0.0513123824189783	0.0552670391373539	0.0	0.1096912376664012	0.7706184313984344
+B85D75_d7	0.0766421770377298	0.023990710865776	0.140403681407551	0.0004878195344148	0.052119410078634	0.7063562010758941
+180E1A_d0	0.0368340885371029	0.0367519773216674	0.1928580636939727	0.0	0.2315853883180425	0.5019704821292142
+180E1A_d7	0.0373293072720217	0.0213612944445732	0.1149161373114323	0.0400503600407108	0.2150996585182849	0.5712432424129767
+180E1A_d14	0.0411903965232829	0.0359353017040122	0.198823370794406	0.0309644187002507	0.1712999873017306	0.5217865249763173