diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv4/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv4/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ed07258da0ffe9e4a60fd6c6a7a8c79e6d21db7b
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv4/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
@@ -0,0 +1,2327 @@
+NAME	B cell	DC	Monocyte	NK cell	Other	T cell
+ENSG00000001561	8.38095286683702589	5.80507512358300382	2.96145770425142629	50.02702305958916895	1.36213514883754550	17.74732692262906042
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+ENSG00000003249	30.77918816779013156	1.00000000000000000	1.60760724267833388	1.00000000000000000	1.00000000000000000	8.61232382074637925
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+ENSG00000240505	51.75554286028349793	7.76543519941712290	1.66066764732994643	1.00000000000000000	11.52631578947366719	1.00000000000000000
+ENSG00000240891	3.26549826304752511	1.94344976173020600	1.00000000000000000	16.45502733999209610	8.04635107310199338	9.47907020050923066
+ENSG00000241106	117.83774808966992964	9.43838475210235472	10.37580487262941453	5.46396608815455131	1.00000000000000000	1.00000000000000000
+ENSG00000241399	1.00000000000000000	144.60736332349148370	181.55212813076940392	3.88156131329004550	2.95023088256038557	1.00000000000000000
+ENSG00000241657	1.64499484004127727	4.49537534953752527	9.71839581516998940	1.00000000000000000	1.00000000000000000	67.53329470749359587
+ENSG00000241962	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	9.40817196783640597
+ENSG00000242265	7.25229892179517321	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000242498	1.00000000000000000	11.99934232411932555	10.25657536674501102	1.46763935652824706	1.00000000000000000	1.00000000000000000
+ENSG00000242574	231.25183752819307870	273.19300199808242269	80.08826643453829774	26.35114633508819892	12.25621284475196404	3.05846027171675772
+ENSG00000243156	44.30172117577109248	3.37159838911999188	2.56979844629923448	4.63836612407309445	3.53864864058256767	4.54442519284617319
+ENSG00000243449	52.27661581795063483	160.24166224448967455	424.21595906041278567	39.42309833503037453	55.20538593551885498	89.32479423962129772
+ENSG00000243772	1.00000000000000000	1.20969635967119560	8.58951989096732049	113.02920348103650383	1.00000000000000000	6.32402450619818701
+ENSG00000244482	4.36021505376342766	29.64722860070595090	106.47827571258240198	1.47719030349303315	13.25846927640133011	1.00000000000000000
+ENSG00000244734	30.34245563216818908	8.99977035413687432	1381.79607556503924570	26.98475606982703567	95816.24193139777344186	22.76656030930877250
+ENSG00000245848	2.48720999405115561	56.24659962547758596	63.82507904630772089	12.44785767826630973	4.68418625031710167	4.17662007623888432
+ENSG00000247626	10.28428171781465039	3.74231037103244191	1.00000000000000000	15.65365755316906871	1.75081674087734296	5.75830096614723885
+ENSG00000249115	21.90042401347900736	4.03822148932132219	5.06241130613798163	14.58023414624244296	1.22383382576774880	8.89202952006271552
+ENSG00000249437	6.31329004852434128	132.56839298165860441	190.78752667065924697	18.00037129664610447	34.73699849143328322	15.25019664616094950
+ENSG00000249992	1.00000000000000000	3.36798484489699224	1.00000000000000000	1.00000000000000000	161.02542289773671769	1.00000000000000000
+ENSG00000250361	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	24.97536542060135289	1.00000000000000000
+ENSG00000250510	1.00000000000000000	10.62117359569071873	15.58937929250392962	1.00000000000000000	1.45004500450044982	1.00000000000000000
+ENSG00000251369	19.59658565538615349	4.47911759002617771	1.88324744686920376	8.62351917361281650	1.82169268693508069	13.99257931429904644
+ENSG00000253305	1.00000000000000000	1.20969635967119560	1.00000000000000000	5.52851912240050769	1.00000000000000000	1.00000000000000000
+ENSG00000254126	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	1.00000000000000000	8.34440701106558258
+ENSG00000254415	1.00000000000000000	6.67095237588199907	9.76260191881025641	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000254470	7.59812800064183502	15.10371633481787335	65.59296412815174904	13.26707468844255899	11.46025104602503397	6.37341456076221391
+ENSG00000254709	244.05336279285569390	15.22142571391199084	4.16585026864292196	36.53842827604898957	152.22847425132778199	15.49275362318838667
+ENSG00000255398	1.00000000000000000	19.80976086909127787	27.81030932312691561	1.33478406427853891	2.57927984838913638	1.00000000000000000
+ENSG00000255587	1.00000000000000000	4.37768830745900495	12.77799186050668290	1.00000000000000000	1.74172971369232932	1.00000000000000000
+ENSG00000255819	1.00000000000000000	1.00000000000000000	1.00000000000000000	6.14389721858798410	1.00000000000000000	4.66885366324902407
+ENSG00000255833	1.00000000000000000	17.56678871356654525	1.41611185086551172	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000256223	82.70683180980461202	25.29259098380999760	7.90837845606008472	18.07560178453812938	17.35380330728562015	42.15601689415957054
+ENSG00000256229	14.52626155227130056	3.79681755359516959	1.35293287216771496	7.59278551340920860	2.37969094922737279	8.81942820246808346
+ENSG00000256235	1.00000000000000000	25.55721876248244229	32.64471409684390579	13.96442663565483677	268.76852837249629147	7.40916567119364533
+ENSG00000257017	3.31481481481480822	7.87458082993759589	64.88759833133150323	1.00000000000000000	11.35834556638496196	1.00000000000000000
+ENSG00000257335	1.00000000000000000	1.00000000000000000	6.49571215164729665	13.30387370855238061	1.00000000000000000	2.92455735180907705
+ENSG00000258227	1.00000000000000000	1.62468765617191235	6.53156619946764838	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000259207	9.93452724917552565	17.40626327685565045	9.33409147738102618	1.45175280086736480	814.51880348131635401	8.29436626550410949
+ENSG00000259330	2.13713895838071766	11.13486010702250262	13.13108291906098657	9.75833739256177957	129.05955455589287340	3.00488675002513128
+ENSG00000260001	1.00000000000000000	1.00000000000000000	1.00000000000000000	4.38523788491912292	1.00000000000000000	5.06674507356901849
+ENSG00000260314	1.00000000000000000	18.95245772344192048	4.81520524852103815	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000260428	6.60359015710245778	1.30648522741203665	1.60313630880579261	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000261371	32.21758860416154846	107.40864176572443967	324.12189969926794220	32.07142943440056371	224.70991070867302142	22.33571754372234963
+ENSG00000261884	1.00000000000000000	3.59167270193476584	9.18537628858857857	1.52115905774442384	1.00000000000000000	1.00000000000000000
+ENSG00000264522	2.02156765679666162	1.56268287193337674	1.68483769346664669	14.29412624406290178	4.73692077727950078	4.02469244405900373
+ENSG00000265118	3.11616947931031207	2.53480786626275112	1.91692646249770382	12.17467014545050752	1.00000000000000000	2.54320987654320163
+ENSG00000266074	1.00000000000000000	9.33505168623734249	4.53653526837406318	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000266412	66.13194399033535831	166.68372854558506901	191.53536114674858482	106.05038575278645396	994.63394878177928149	93.66413784820964850
+ENSG00000268182	1.00000000000000000	1.00000000000000000	1.00000000000000000	6.44811675711927190	1.00000000000000000	1.00000000000000000
+ENSG00000269404	102.65443075643231907	71.49513776679557964	3.23106640977580950	6.77861066122608680	2.96138983483126417	1.00000000000000000
+ENSG00000269897	1.00000000000000000	1.00000000000000000	1.00000000000000000	5.42869796279893713	1.00000000000000000	1.00000000000000000
+ENSG00000271503	27.54190171019597244	63.53055562234408171	58.32804545785239725	2906.38207477221658337	1517.37363830556932953	1313.34771791608022795
+ENSG00000271605	5.18627593530226072	28.89506925528628756	27.45712852949531424	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000272398	189.94861375030311024	4.91332615522960392	3.31910946196659973	1.98658976977848090	20.29104975323452109	1.00000000000000000
+ENSG00000272602	18.49854651606919020	10.11655949235350782	2.36997814866684919	29.56126367935347332	3.70259938268103239	4.11598837126481154
+ENSG00000273749	2.84341094667603578	46.57573846277514207	42.12602943225270735	2.90186382655002539	33.79730167282196618	1.75540111799365395
+ENSG00000273802	2.89035916824196359	4.43357596287538236	1.73975440153869165	1.69348127600554799	24.46724796048730255	2.96772924045650166
+ENSG00000274588	1.00000000000000000	1.00000000000000000	1.00000000000000000	7.45204242701284869	1.00000000000000000	1.00000000000000000
+ENSG00000274641	1.00000000000000000	2.24592316413775395	1.00000000000000000	1.00000000000000000	22.73936845793372186	1.24223632575941068
+ENSG00000275302	87.68769186441893737	90.28630687148381639	274.88150695642571009	2882.03212452174329883	156.73780915128301672	688.74604709558127524
+ENSG00000275713	16.13797447318955136	2.56051705682738540	14.86298249327967547	5.48348247074842821	95.97750291116948063	7.72369797212512044
+ENSG00000276070	9.37132902254144184	67.59001050721289516	70.38251326208234104	388.56088644726258963	58.24312520690548212	118.68917694261185147
+ENSG00000276085	2.25976316452506554	78.54744779842674518	122.01803564010572245	28.85724088440924717	1.47929447852760809	6.15428420681272037
+ENSG00000276231	1.50911312493635896	13.90032262758767345	8.57929470516598336	1.00000000000000000	1.00000000000000000	3.41473592452579533
+ENSG00000276368	2.84516702374782504	6.20965403073992750	4.27568134171908376	2.31233595800525382	1.00000000000000000	12.03903365094705791
+ENSG00000276547	2.74155346569139002	1.00000000000000000	1.00000000000000000	6.07045428334784098	1.00000000000000000	1.00000000000000000
+ENSG00000277443	85.91880511865754499	70.22466767957392619	141.48957876484200824	2.40291806958474119	14.44086021505373907	1.74041166888789922
+ENSG00000277632	6.95075910770063654	103.11995228062056640	313.45123412089355952	414.85243935460562170	7.20732464307882292	59.37016475166947771
+ENSG00000277775	1.00000000000000000	1.29163021289005364	1.00000000000000000	2.29198966408268578	19.52948029294524446	5.33564724751369113
+ENSG00000278828	14.43090534257653523	19.51430110872709633	22.14651741525642947	31.59653171768783153	715.06036076919338029	17.33305597156512334
+ENSG00000280969	4.21654529286534707	1.00000000000000000	1.30380362133916705	1.00000000000000000	1.00000000000000000	1.00000000000000000
+ENSG00000283930	8.66912175587463807	2.08813617895638082	2.44191156275747767	9.35560723919490123	1.59780009564801606	1.00000000000000000
+ENSG00000285382	3.16598475116853395	3.85571245035150989	1.45355587808417885	45.29869851643960743	11.80723749480537066	14.70467243380292999
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv4/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv4/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e52e2032a16c79ccce64c632dfc133eccc9fefc3
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv4/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.txt
@@ -0,0 +1,6 @@
+B cell	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+DC	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+Monocyte	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2
+NK cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2
+Other	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1	2	2	2	2	2
+T cell	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	1	1	1	1	1
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv4/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv4/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt
new file mode 100644
index 0000000000000000000000000000000000000000..15d05fbecbdb2b494291a54b12c08e8c04cc9cbb
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv4/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt
@@ -0,0 +1,2327 @@
+GeneSymbol	B cell	DC	Monocyte	NK cell	Other	T cell
+ENSG00000001561	8.03091254878273908	9.23509266764825654	2.67552757607973701	70.09148681357874011	1.07179072709372325	26.78878757500740448
+ENSG00000002587	23.39878256167103387	3.36147625064735411	0.82908744945637725	0.00000000000000000	0.00000000000000000	0.30579223727544924
+ENSG00000002745	4.62670249739197192	1.06852126987173257	0.00000000000000000	0.00000000000000000	0.00000000000000000	0.00000000000000000
+ENSG00000002933	3.12943886939518867	57.72723905433220892	301.17385485349939245	11.77989236158451725	25.99756940986778275	4.80598178676830567
+ENSG00000003249	21.59548243877027573	0.00000000000000000	0.88615585251639206	0.00000000000000000	0.86762884577646504	3.42628012865817411
+ENSG00000003436	0.00000000000000000	1.23396917962345642	0.00000000000000000	1.64329146229538736	46.69449419138322099	0.30213138841281145
+ENSG00000004799	1.14547026427446919	34.37878785856854336	114.30365746453681197	0.00000000000000000	21.99195763290802219	0.75223280439492934
+ENSG00000004866	3.15118058255983646	5.40242423075322353	3.12393572367368311	6.96590105623431022	31.43567326772850024	4.21857614869682163
+ENSG00000004939	2.15329588373223713	0.00000000000000000	4.44918590372932243	0.00000000000000000	56.05238767092166796	0.00000000000000000
+ENSG00000005243	2.12044823878435995	0.98442723586777214	2.10912459995641877	13.80501992101710229	3.66816958248683500	0.72182920080968604
+ENSG00000005249	25.49280423063522250	69.82314463090881418	1.15734829933795869	50.42771980602380211	1105.35890841947002627	12.98120050189283248
+ENSG00000005379	0.00000000000000000	20.19609410129964644	17.97766990434608658	164.48324586897007293	20.55991602640282068	36.83979191846204060
+ENSG00000005471	20.34158359709941166	0.00000000000000000	0.62705387732703144	1.02343904295910826	1.64669242387212789	0.48117788626054853
+ENSG00000005513	0.02336055151328334	0.31700639939015313	0.00000000000000000	0.00000000000000000	1.47813217302755673	4.30378678184618124
+ENSG00000005844	56.29422904325765842	149.85270987018671462	436.36239036981720574	701.76740245865403267	140.30987345771291075	298.29045654671045895
+ENSG00000005961	0.00000000000000000	12.76454144149274583	41.40972656317431699	103.92229121027743588	1275.53256534937850120	16.56420610145633177
+ENSG00000006432	22.23367354906518401	0.01177519176851166	1.88576190354132356	4.44902044177546063	2.13612648787262760	6.80292151128327038
+ENSG00000006530	18.87545971225315711	9.23209006913087116	16.26514963093838162	66.11522274339169769	2.66706087386407731	24.67026691951745931
+ENSG00000006534	2.44710903368066024	82.09143074264005691	101.56833027644834999	1.15125915640035514	25.86741221166955995	3.51178730831119124
+ENSG00000006555	6.19148255293929584	7.22878818975071447	3.18227876995914283	42.44051522305591817	0.00000000000000000	16.34843384033531777
+ENSG00000006638	6.07806431636029831	0.38772243711372961	1.62283273299821706	5.03418454937371873	64.35613154431332816	2.41083030682189881
+ENSG00000007038	2.14759797049305989	2.32258970237268558	0.10919484868177197	3.73200273072491662	4.98037959453989032	10.87044601923728848
+ENSG00000007237	16.06311365131560365	128.70252547767017859	356.97570975648716285	94.12746220698386423	12.24884612696478747	20.94808151356778936
+ENSG00000007264	7.37909957540307904	1.07341995353025244	14.60739057077235969	345.62740834000351242	22.34206290509968795	72.36226798797893878
+ENSG00000007312	259.94591316289063343	16.54289145421844509	5.27766431198864083	23.41215317281603703	17.33215756980607125	12.29533547163202734
+ENSG00000007350	0.00000000000000000	0.00000000000000000	2.24847732795285671	44.04613507394569183	1.58915847490751694	5.50353678236661992
+ENSG00000007402	0.00000000000000000	0.07640106277607538	0.00000000000000000	31.95284450917482744	0.00000000000000000	21.95337254474209487
+ENSG00000007516	30.11518150090338963	0.00000000000000000	4.63865324239376076	10.18487843843814566	3.42067195454715200	2.77433829049835756
+ENSG00000007545	19.41585669036020789	10.04133145001736693	16.24830850373828639	64.27150019697836569	10.73203908377660198	9.80377476907215772
+ENSG00000008282	121.36283065077755339	32.58487464429092739	34.06407511378561992	18.55228663512903964	33.75825412443778362	48.12291012743114749
+ENSG00000008283	5.83910237957128597	8.64415842508273258	7.81337681056804012	15.67344768732515448	13.36607568130491686	50.17514238642863944
+ENSG00000008394	1.41654554936272259	75.92866264005188270	117.51315264358471779	0.26392098247460682	7.08971117669148398	1.13382355953432179
+ENSG00000008441	6.16088510404336631	4.78150606587780480	7.59840881440903182	0.26120868014159171	25.47982465477690184	1.32114192262286623
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diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv4/out_hires/fractions_results.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv4/out_hires/fractions_results.txt
new file mode 100644
index 0000000000000000000000000000000000000000..63ba257464e047e1ceeeb84616007aab08ee3663
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/cv4/out_hires/fractions_results.txt
@@ -0,0 +1,17 @@
+Mixture	B cell	DC	Monocyte	NK cell	Other	T cell
+Abd-PS20	0.6000849336612242	0.0	0.0010777429170882	0.0	0.0	0.3988373234216874
+Abd-PS27	0.0163530703191464	0.0831436849533454	0.0640051021045571	0.0	0.0766331163217884	0.7598650263011624
+Abd-S42	0.0039343749994475	0.1832443788668854	0.1408333914018335	0.177411776363422	0.0483912466787995	0.4461848316896119
+Abd-S54	0.1003942586100252	0.1609783836090463	0.1443926180775463	0.3268820512708545	0.0590708720491203	0.2082818163834072
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+HC16	0.0	0.1782080459022829	0.0	0.4707264119065189	0.0001369315760686	0.3509286106151293
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