diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/fewshot4/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/fewshot4/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6719fa95e8b81e1d7124981325b6a71ab829892b
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/fewshot4/out_fractions/CIBERSORTx_sigmatrix_Adjusted.txt
@@ -0,0 +1,2190 @@
+GeneSymbol	B cell	DC	Monocyte	NK cell	Other	T cell
+ENSG00000000971	0.84968998865230083	1.14833284776340583	2.06486238628137908	1.25607660072091409	26.52935452856486975	27.52680594929013225
+ENSG00000002587	5.27389993067591334	5.53933685730112479	0.00000000000000000	0.17723657632099071	0.00000000000000000	0.02769853492860600
+ENSG00000002745	4.71173578661800718	0.00000000000000000	0.00000000000000000	0.00000000000000000	0.00000000000000000	0.00000000000000000
+ENSG00000002933	2.75085436918044968	21.32591833085937338	129.99078641191397310	1.50015970128067888	6.78942624050077459	2.15500106306672068
+ENSG00000003249	14.12632598652785099	0.45302727658992209	0.03483001900402701	0.09492382440192723	0.00000000000000000	1.01613051127546816
+ENSG00000003436	0.66209342241505154	2.05554339600074698	0.90639313165805135	0.23762052094127856	34.16623287919554741	1.15148397631446620
+ENSG00000004139	16.53665798830774136	4.72213682996993622	7.36921869933852580	32.60381341213179240	8.14378539453414696	34.94553451086682827
+ENSG00000004468	64.66657964309753481	32.91599372576263960	9.89027831788850342	215.78693255394372841	20.56298957254033866	14.39840262005837346
+ENSG00000004660	3.91473999779176607	9.71828715128993892	23.97634490449513933	2.50451580129463425	2.37431834298919098	2.06852729518035883
+ENSG00000004799	5.74688141869857283	35.53981074221587022	79.69786950082578869	5.10023688532644304	0.00000000000000000	0.00000000000000000
+ENSG00000004939	7.76194524161714305	8.39200832848268163	0.00000000000000000	1.61582476297335886	636.64970300740912990	2.22355782226397736
+ENSG00000005187	9.98936099049826254	1.47502096332200061	1.67984753875246806	0.71381944970051037	37.75176342737592705	1.95866843020013626
+ENSG00000005243	0.08224448833543863	1.62383998174841371	1.23079110520441182	9.62036721290330732	3.43734467663341370	4.10572788385092924
+ENSG00000005249	22.62923981150235520	64.31232819344759832	38.39658812770291973	19.44907795912828163	794.72380620649232696	34.07321313072264957
+ENSG00000005379	17.59751450697818242	19.98538756410580675	11.22693121447789011	125.79342391478111551	19.99873434001863259	48.40214530968085427
+ENSG00000005471	14.92850558628885516	3.91801293439177067	0.56010238760832654	0.00000000000000000	0.07119342480488049	1.25237844610733595
+ENSG00000005844	113.15153406145390136	193.77020061010250629	390.67941230838653155	679.92990548726118050	130.10592313976610512	484.91294242452136132
+ENSG00000005961	16.11532061931977111	33.20009657526585301	26.88646958058815528	22.65169288503234668	905.12971783897432942	31.19091825808128604
+ENSG00000006530	16.61059073947200559	16.58231577742267149	6.08237257130020303	67.95960273811232355	20.26015287255486896	40.67303361111639504
+ENSG00000006534	12.15044790138826336	72.18249937446887543	141.27642788740584479	5.11048850867593174	13.34233785021843666	12.03497435454462128
+ENSG00000006555	3.50633943143662430	1.12417947165363596	2.50923737945442715	32.42828182763219047	4.35341771752371631	10.18647427476113698
+ENSG00000006638	2.12648535058608479	1.97133676409885750	0.59086473129225037	1.32016870189389857	51.67792085582082962	2.49539358257511745
+ENSG00000007062	0.09209991001308036	0.03070380570823772	0.13570717437294641	0.09491058393664929	7.81249592251777258	0.21219769142283787
+ENSG00000007237	30.83847150507134316	135.20794305270987934	252.63710713199921543	65.17843218182675002	36.86876203103751948	42.14745243576894751
+ENSG00000007264	13.78686662988145883	16.82410706229886443	14.39420439641485494	244.62108663396401198	42.40164294482012508	133.13159914852522547
+ENSG00000007312	141.92718659447234586	8.08890294208551452	17.12546199554074278	12.65262577028700441	6.60107602785844794	9.22275894413096253
+ENSG00000007350	1.07912232404073771	0.65246547678941325	0.83031169244753289	28.31149891475233460	1.48150477337806441	1.64160064889748436
+ENSG00000007402	1.76896501007142604	4.67307656220001721	1.18256943728496289	40.04672195301203885	1.55814234811383701	39.09173410766899792
+ENSG00000007516	35.41697598310577177	0.96170624024488416	0.00000000000000000	9.98772363246894379	5.62253984500070914	4.33989557961757821
+ENSG00000008282	108.69181636310705130	32.65978356052555398	28.68030487177277621	19.28931739061972905	56.88462752317147419	32.54901812195916477
+ENSG00000008283	2.34265240817454901	6.14010871612744058	13.63657908134284646	12.94287568743013495	27.65603350927836601	52.18605613636646723
+ENSG00000008394	5.34740881803381640	43.11289336347339685	50.54932032517284313	3.06804490291680887	21.18151994340684041	3.57392735855830246
+ENSG00000008517	66.41484659224013853	61.82887147086504598	80.22697147642776372	583.17754392228857796	247.66271944563402485	1310.57402712541738765
+ENSG00000009694	0.10343536524416766	2.23734571944199301	0.54299280670148720	21.00691288371524834	0.99921983068743403	10.32016180933883298
+ENSG00000010278	7.09001033526882374	17.09271154045138630	11.56334915515977713	5.98585459259071762	206.28289850188190258	12.07973339699429260
+ENSG00000010327	20.92981913316141984	70.38420548471557936	489.90583992646600109	20.07655296554812807	14.61749756421167490	37.55647605507095221
+ENSG00000010610	21.10370076613614287	285.05890319370502084	256.98078985563506649	40.99238781412576316	28.42113890331864212	118.89524962053791057
+ENSG00000010671	152.60883304657005510	94.59142914501515520	98.33096743315327615	13.59903463891101261	148.11767789078405144	19.57929595638578846
+ENSG00000011105	2.54442657077959700	2.63421006549654413	1.03226305843046862	1.46879681931750095	62.02394524762764405	2.11531938132217689
+ENSG00000011422	22.61250987522289435	161.08756554724260468	304.98418954530052360	27.90041045421085286	18.52488030004921526	18.13425269464806533
+ENSG00000011590	18.18998013005692016	0.35214677249258175	0.37256813340092199	0.47467895531579596	0.00000000000000000	2.56416479982825507
+ENSG00000011600	93.52731388511972455	655.68416545870377377	1306.94846791518489226	754.92833759673374061	135.83505465103775123	175.60058182670812243
+ENSG00000012124	234.02667663276432108	13.43712751518286908	4.94356777634741729	5.18840916707058497	15.83235048640852760	6.30616315047645504
+ENSG00000012779	341.22641520073761967	184.45244725342200809	404.86244383849691530	27.72462767496457658	92.24232041671487536	46.15922923122951715
+ENSG00000013016	15.94222300605206755	6.91583926367274149	5.39753539175782748	6.15847743547861448	164.33481809879148727	11.08120992057688170
+ENSG00000013725	32.59182935632777145	15.17395309798733649	13.56184178198622092	156.49929803745800427	71.13412707816399916	361.35403147661003231
+ENSG00000014257	3.10757616958104954	35.64301071095761131	30.84106629140588751	3.68404737814818484	2.76472538752785901	4.79755961687406529
+ENSG00000014914	5.27501073298734013	29.19119594854968014	54.07209488102009942	6.46253314331911088	7.71834183352190895	3.69615463304888392
+ENSG00000018280	80.05590106214644663	59.59316912763111418	723.53414386149859183	45.99532920910637301	115.41822987540926704	45.68276480400788842
+ENSG00000019169	2.35994863289453916	11.63091439365541646	48.82593812458316762	1.09960795631337183	0.00000000000000000	1.08167972769118115
+ENSG00000019582	11143.43837316361532430	13300.81880456468934426	3880.84190155701116964	1336.05449592677655346	1366.85730524252562645	1521.56141090689197881
+ENSG00000019991	3.10731651314581514	6.19576384405941116	26.26065042642845881	1.50436444436218308	2.09269676028063278	3.22716575235850200
+ENSG00000020577	14.58827296073871516	21.52858660672413649	84.14450115338705416	1.74316505238342523	12.11273326107401616	1.09274824676415383
+ENSG00000020633	110.11648438870194866	96.46151543870654166	142.59250963853358485	589.59929696985750525	93.48731343848068320	331.10360251849334645
+ENSG00000021300	11.78844070277242650	0.06775159898779175	0.00000000000000000	7.41241715209420793	6.77967585402357464	14.37777846978036500
+ENSG00000021762	11.08941983089122196	46.61532521558875430	34.77102569889547112	198.36692603740357299	21.36844101495104908	69.45000202326511385
+ENSG00000022267	9.45539557562804411	8.81571309311594220	6.00498595980475436	4.57468731201587975	144.02804152691683726	10.72072928331626507
+ENSG00000023171	5.57431272918519927	63.00088909944952320	37.90645350761676724	11.22672979493067125	20.22023125326584392	13.93981774285056474
+ENSG00000023445	275.29505498436935795	40.12478854369008019	75.27124483664420040	54.83671856719497839	49.92423284812701922	43.94830891370541792
+ENSG00000023909	13.00705353770490014	6.44805318337195299	4.71242268410867737	22.28007336816995476	82.65416303547398513	29.55590265006449968
+ENSG00000024422	0.00000000000000000	0.20574574367103277	0.00213364021660133	0.02564442983186690	7.59362462801347071	0.16553045028695515
+ENSG00000025708	165.71181968254944650	746.67112516762108498	1604.98729707164943648	200.15969774531205871	196.36955009923408966	122.30374870130131626
+ENSG00000026559	7.21512334831745594	0.00000000000000000	1.39291476504179612	0.02578288449085852	0.00000000000000000	0.00000000000000000
+ENSG00000026751	32.65858324745678232	84.59990046403433439	53.17728626502123745	174.50513269659927573	0.17864868477773019	106.44583979038660004
+ENSG00000027001	6.57422448527448111	3.95822773303250752	2.76960280203198250	6.53697405826133693	4.93125048089774598	19.72095813483677773
+ENSG00000027075	34.71224264185239861	39.45473157877346893	32.70864083207100492	342.27572869645496212	55.79588954743940832	257.89832365535227154
+ENSG00000027869	15.80928706441397225	6.86535525764799548	16.73966436451306805	193.49796658874564059	37.79447088466478988	95.31412329369827319
+ENSG00000028137	206.03669743495640887	316.40622055014750913	1046.44767199569810145	388.80500998027093829	104.46598688921723408	291.75677071919653827
+ENSG00000029534	9.15630653587958321	7.34510366103612977	1.75929234213546715	1.58549844257880523	264.39003510399749075	1.36525471153892775
+ENSG00000030582	233.09489865269671327	1221.85696285573180830	1085.65954802988994743	124.98303189001208580	175.12617431874966201	120.34632219911685524
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+ENSG00000035403	84.69576111354710690	156.15647864816318702	145.45386469638506810	148.10982415861005279	1238.27349789463278285	140.26211180150193059
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+ENSG00000035862	41.33032240773977151	174.11576024145421115	285.03447076829922935	23.29254844110758427	29.10834717464145882	25.15965549284431901
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+ENSG00000036530	3.16521164249786713	3.87070095064621222	0.00000000000000000	0.03994396142448148	0.00000000000000000	0.57014383630296417
+ENSG00000037749	11.97223462791561843	4.31569012427681553	4.45029942498990660	22.83372642153420884	9.48249023114612655	11.02982868462591526
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+ENSG00000038945	1.12297680935519484	15.73764417559811513	40.45427949650039068	0.00000000000000000	8.75910273487397362	0.73731599280764948
+ENSG00000041353	6.56906859589467462	10.46446549886522703	5.96803733442572248	28.47419700350517147	229.13526138778715335	18.91875873769562588
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+ENSG00000048462	33.31277528287765222	2.15398522552548588	0.02888319997581814	0.16146916813196613	0.38624106759500998	1.29358135032765786
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diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/fewshot4/out_hires/fractions_results.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/fewshot4/out_hires/fractions_results.txt
new file mode 100644
index 0000000000000000000000000000000000000000..90b0c64d9218d6492c8353fe7fc330f9d00806f5
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/fewshot4/out_hires/fractions_results.txt
@@ -0,0 +1,144 @@
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diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/cv0/out_fractions/CIBERSORTx_Adjusted.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/cv0/out_fractions/CIBERSORTx_Adjusted.txt
new file mode 100644
index 0000000000000000000000000000000000000000..81723d5dee30eb2dd1a406c8fdddaf9594d394b8
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/cv0/out_fractions/CIBERSORTx_Adjusted.txt
@@ -0,0 +1,8 @@
+Mixture	B cell	DC	Monocyte	NK cell	Other	T cell	P-value	Correlation	RMSE
+N136_TOL	0.06596306144903660	0.00000000000000000	0.20648890295742262	0.10688143538106443	0.62003022546420827	0.00063637474826801	9999.00000000000000000	0.79557255128310889	0.87047605374884995
+N136_FU1	0.06644016633752570	0.00000000000000000	0.29469472476693659	0.06770642932349082	0.38345130179344561	0.18770737777860130	9999.00000000000000000	0.83605671117778391	0.55412633860947025
+N128_BC	0.06196137702371172	0.09412728063716252	0.17770658882056656	0.09224216808108034	0.30568912754967470	0.26827345788780421	9999.00000000000000000	0.57421814032758201	0.83166408236967804
+N128_AC	0.04376602481884882	0.13044276366046953	0.15634133384556423	0.12379410657573720	0.26097204896832893	0.28468372213105148	9999.00000000000000000	0.55854477385634582	0.83153680673750219
+N158_AC	0.04691734201907589	0.13839611874982571	0.07898406277844340	0.09887036108550754	0.60926603340326879	0.02756608196387873	9999.00000000000000000	0.92975694634456441	0.58615299819121813
+N012_TOL	0.05505778501688647	0.00000000000000000	0.16313268925839380	0.17184446078952170	0.45285918072324571	0.15710588421195223	9999.00000000000000000	0.67546897146568963	0.82269285682388993
+N012_FU1	0.12436421239025741	0.00000000000000000	0.21048100209781878	0.24093937160133100	0.35214493150149839	0.07207048240909447	9999.00000000000000000	0.57859185808284597	0.85446100043134299
diff --git a/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/cv0/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/cv0/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
new file mode 100644
index 0000000000000000000000000000000000000000..eeac6ef17524f04d529a95fef007a1fa75bd5909
--- /dev/null
+++ b/paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/ji2025_chili/cv0/out_fractions/CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
@@ -0,0 +1,2418 @@
+NAME	B cell	DC	Monocyte	NK cell	Other	T cell
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