import numpy as np from scipy.ndimage import distance_transform_edt, gaussian_filter, zoom, median_filter import matplotlib.pyplot as plt from skimage.measure import marching_cubes from scipy.ndimage import binary_fill_holes, label from mpl_toolkits.mplot3d.art3d import Poly3DCollection from scipy.spatial import Delaunay from scipy.interpolate import griddata # import trimesh def compute_sdf(voxel_matrix): inside_dist = distance_transform_edt(voxel_matrix) outside_dist = distance_transform_edt(1 - voxel_matrix) sdf = outside_dist - inside_dist # sdf = gaussian_filter(sdf, sigma=3.0) sdf = sdf / 32.0 sdf = sdf.clip(-0.2, 0.2) return sdf def sdf_to_voxel(sdf, level=0.02): sdf_smoothed = gaussian_filter(sdf, sigma=0.5) binary_mask = binary_fill_holes(sdf_smoothed <= level).astype(np.uint8) # structuring_element = ball(radius=1) # binary_mask_opened = binary_opening(binary_mask, footprint=structuring_element) # binary_mask_closed = binary_closing(binary_mask_opened, footprint=structuring_element) # binary_mask_eroded = binary_erosion(binary_mask_closed, structure=structuring_element) # binary_mask_dilated = binary_dilation(binary_mask_eroded, structure=structuring_element) # filled_voxel = gaussian_filter(binary_mask_dilated.astype(np.float32), sigma=1.0) # filled_voxel = filled_voxel > 0.5 filled_voxel = binary_mask return filled_voxel # def sdf_to_voxel(sdf, level=0.02): # sdf = gaussian_filter(sdf, sigma=3.0) # sdf = median_filter(sdf, size=5) # filled_voxel = binary_fill_holes(sdf <= level).astype(np.uint8) # return filled_voxel