SimpleFoldData

One million structures · collection and curation

Updated 2026-10-14T13:03:54+00:00

Target distinct sequences1,000,000
Author AFESM clusters indexed2,036,414
Author AFESM-E membership rows indexed8,616,595
Author SwissProt IDs indexed269,003
Coordinate-qualified candidates (before global deduplication)1,671,219
Final selected unique sequences1,000,000
Selected structures uploaded1,000,000
Sequences embedded60
Embedding bytes stored156,194,104

Build details

# SimpleFoldData — collection and curation progress

Updated **2026-10-14T13:03:54+00:00**. Target: **1,000,000 distinct sequences with validated structures**.

Status: **release complete**.

| Measure | Count |
|---|---:|
| Target distinct sequences | 1,000,000 |
| Author AFESM clusters indexed | 2,036,414 |
| Author AFESM-E membership rows indexed | 8,616,595 |
| Author SwissProt IDs indexed | 269,003 |
| Coordinate-qualified candidates (before global deduplication) | 1,671,219 |
| Final selected unique sequences | 1,000,000 |
| Selected structures uploaded | 1,000,000 |
| Sequences embedded | 60 |
| Embedding bytes stored | 156,194,104 |

Source catalog counts are not counts of retrieved or training-ready structures. Candidate counts precede global sequence deduplication.

## Active stages

- **Author inventory:** author_inventory_complete; swissprot_author_rows=269,003, afesm_author_rows=2,036,414, targets=2,305,417, clusters=2,036,414, memberships=8,616,595, afesm_representatives_unmapped=0, members_with_multiple_clusters=0
- **SwissProt:** complete; coordinate_qualified=263,278, confidence_rejected=5,698, absent_from_available_archive=27
- **AFESM (superseded):** superseded; coordinate_qualified=4,477, source_unavailable=403, confidence_rejected=46, validation_rejected=2
- **AFDB bulk:** complete; coordinate_qualified=1,214,204, validation_rejected=464,863
- **PDB:** batch_complete; entry_processed=163,197, coordinate_qualified=457,015, validation_rejected=22
- **Final curation:** complete
- **Upload:** swissprot_candidates_uploaded
- **ESM-C 6B embeddings:** pilot_complete

## Scope

The source pool retains original IDs, cluster assignments, source versions, sequence and coordinate hashes, confidence values, and rejection reasons. It has no benchmark-specific contamination exclusions. Full-chain coordinate identity is checked independently from full biological parent identity; fragments remain explicitly identified.

## Jobs

```text
JobID|State|Elapsed|ExitCode
1320364|COMPLETED|00:01:27|0:0
1320364.batch|COMPLETED|00:01:27|0:0
1320364.extern|COMPLETED|00:01:27|0:0
1320405|COMPLETED|00:04:15|0:0
1320405.batch|COMPLETED|00:04:15|0:0
1320405.extern|COMPLETED|00:04:15|0:0
1320495|COMPLETED|00:01:05|0:0
1320495.batch|COMPLETED|00:01:05|0:0
1320495.extern|COMPLETED|00:01:05|0:0
1320498|COMPLETED|00:00:42|0:0
1320498.batch|COMPLETED|00:00:42|0:0
1320498.extern|COMPLETED|00:00:42|0:0
1320523|COMPLETED|00:00:43|0:0
1320523.batch|COMPLETED|00:00:43|0:0
1320523.extern|COMPLETED|00:00:43|0:0
1320537|COMPLETED|00:02:11|0:0
1320537.batch|COMPLETED|00:02:11|0:0
1320537.extern|COMPLETED|00:02:11|0:0
1320554|CANCELLED by 21014|00:31:03|0:0
1320554.batch|CANCELLED|00:31:03|0:15
1320554.extern|COMPLETED|00:31:03|0:0
1320625|COMPLETED|09:02:24|0:0
1320625.batch|COMPLETED|09:02:24|0:0
1320625.extern|COMPLETED|09:02:24|0:0
1321100|COMPLETED|00:41:25|0:0
1321100.batch|COMPLETED|00:41:25|0:0
1321100.extern|COMPLETED|00:41:25|0:0
1321145|COMPLETED|01:08:29|0:0
1321145.batch|COMPLETED|01:08:29|0:0
1321145.extern|COMPLETED|01:08:29|0:0
1337783|PENDING|00:00:00|0:0
```

Next hourly update scheduled; remaining updates: 149.

Public dataset