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--- a/.gitattributes
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+*.tif filter=lfs diff=lfs merge=lfs -text
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+*.zip filter=lfs diff=lfs merge=lfs -text
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diff --git a/README.md b/README.md
index e7d90ddb789e264c5ea4a99dccd0b911883df4c5..2d16d8946edc2053f509988e1cca5d7ccf1b44df 100644
--- a/README.md
+++ b/README.md
@@ -1,3 +1,48 @@
 ---
-license: unknown
+license: cc-by-4.0
+task_categories:
+  - image-segmentation
+  - image-to-text
+tags:
+  - immunofluorescence
+  - spatial-transcriptomics
+  - spatial-proteomics
+  - alzheimers-disease
+  - cell-segmentation
+pretty_name: SPInfer ROSMAP
 ---
+
+# SPInfer ROSMAP Data
+
+This repository is prepared to host the SPInfer ROSMAP data release.
+
+## Contents
+
+- `raw_annotations/`: original annotated IF image folders and ROI annotation zip files from the local annotation resource.
+- `cellpose_prepared/`: prepared Cellpose-style train/validation/test image and mask folders.
+- `metadata/`: donor split file and release metadata.
+- `manifest.tsv`: file sizes and SHA256 checksums.
+
+Clinical/pathology tables are not included in this public staging bundle.
+
+## Important
+
+Confirm ROSMAP and institutional data-use permissions before making this repository public. If needed, keep the Hugging Face repository gated.
+
+## Package
+
+Use with the SPInfer package:
+
+```bash
+spinfer doctor --config configs/paths.yaml
+spinfer prepare-cellpose --config configs/paths.yaml
+spinfer infer --config configs/paths.yaml --finetuned-model allgt_cpsam
+```
+
+## Source
+
+Local staging was prepared for `liangyou03/SPInfer-ROSMAP`.
+
+## Citation
+
+Please cite the SPInfer manuscript and software release when using this dataset.
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diff --git a/metadata/release_metadata.json b/metadata/release_metadata.json
new file mode 100644
index 0000000000000000000000000000000000000000..ef4dec2368fe5246fb76dcebb728cb18414548d4
--- /dev/null
+++ b/metadata/release_metadata.json
@@ -0,0 +1,12 @@
+{
+  "repo_id": "liangyou03/SPInfer-ROSMAP",
+  "raw_annotations_source": "/ix/jbwang/liangyou/fintune/data/ann_batch21",
+  "cellpose_prepared_source": "/ix/jbwang/liangyou/fintune/data/cellpose",
+  "splits_source": "/ix/jbwang/liangyou/fintune/data/splits",
+  "notes": [
+    "data/rosmap is empty in the current local workspace; cohort raw tiles should be added before public upload if they are intended for release.",
+    "Prediction outputs under ann_batch21/processed/predictions are intentionally excluded from raw_annotations.",
+    "Clinical/pathology tables are excluded by default. Rebuild with --include-clinical only after confirming permissions.",
+    "Confirm ROSMAP data-use permissions before making this dataset public."
+  ]
+}
diff --git a/metadata/rosmap_donor_ids_n71.txt b/metadata/rosmap_donor_ids_n71.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ef56992d916a113c6601de3b7767455a151b258f
--- /dev/null
+++ b/metadata/rosmap_donor_ids_n71.txt
@@ -0,0 +1,71 @@
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diff --git a/metadata/splits/donor_splits.yaml b/metadata/splits/donor_splits.yaml
new file mode 100644
index 0000000000000000000000000000000000000000..d769865e0f0b9e3c5aa7daacdfa1a421095ea6c8
--- /dev/null
+++ b/metadata/splits/donor_splits.yaml
@@ -0,0 +1,123 @@
+test:
+- '1110'
+- '1120'
+- '12779'
+- '12786'
+- '12794'
+- '12798'
+- '2144'
+- '3392'
+- '5059'
+- '5410'
+- '5789'
+- '5794'
+- '5923'
+- '6748'
+- '6833'
+- '7739'
+- '7925'
+- '806'
+- '8224'
+- '8405'
+- '8406'
+- '8409'
+- '888'
+- '8917'
+train:
+- '10166'
+- '10396'
+- '10594'
+- '11036'
+- '1109'
+- '11126'
+- '1113'
+- '1115'
+- '1116'
+- '12105'
+- '12358'
+- '12445'
+- '12781'
+- '12785'
+- '12787'
+- '12789'
+- '12790'
+- '12791'
+- '12793'
+- '12795'
+- '12797'
+- '12799'
+- '1360'
+- '1534'
+- '2529'
+- '2783'
+- '2822'
+- '3067'
+- '307'
+- '3527'
+- '3532'
+- '355'
+- '3569'
+- '3999'
+- '400'
+- '4201'
+- '4238'
+- '4319'
+- '4515'
+- '4548'
+- '4736'
+- '5191'
+- '568'
+- '5792'
+- '5795'
+- '5803'
+- '585'
+- '5863'
+- '6020'
+- '6212'
+- '635'
+- '6390'
+- '6523'
+- '679'
+- '7071'
+- '7113'
+- '728'
+- '7319'
+- '7685'
+- '7870'
+- '7962'
+- '8265'
+- '8310'
+- '8407'
+- '8517'
+- '8550'
+- '8746'
+- '8942'
+- '9106'
+- '9472'
+- '9755'
+- '9783'
+val:
+- '10015'
+- '10061'
+- '1108'
+- '1111'
+- '1112'
+- '1114'
+- '12400'
+- '12780'
+- '12782'
+- '12783'
+- '12784'
+- '12788'
+- '12792'
+- '12796'
+- '13161'
+- '1492'
+- '2232'
+- '4642'
+- '4683'
+- '6466'
+- '6790'
+- '8408'
+- '9170'
+- '9866'
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+iba1	8406	iba1_8406	Extra Iba1 For Liang	included	brain_data	1	0	data/ann_batch21/Extra Iba1 For Liang/8406Iba1_RoiSet_Iba1_CellBodies_IN.zip	/ix/jbwang/liangyou/fintune/data/brain_data/iba1_8406.tiff	/ix/jbwang/liangyou/fintune/data/brain_data/iba1_8406_marker.tiff	1040	1388	21	21	85	data/ann_batch21/processed/for_model/iba1_8406.tif	data/ann_batch21/processed/for_model/iba1_8406_mask.tif	data/ann_batch21/processed/for_model/iba1_8406_cellbodies.npy
+iba1	8407	iba1_8407	Extra Iba1 For Liang	included	brain_data	1	0	data/ann_batch21/Extra Iba1 For Liang/8407Iba1_RoiSet_Iba1_CellBodies_IN.zip	/ix/jbwang/liangyou/fintune/data/brain_data/iba1_8407.tiff	/ix/jbwang/liangyou/fintune/data/brain_data/iba1_8407_marker.tiff	1040	1388	9	9	0	data/ann_batch21/processed/for_model/iba1_8407.tif	data/ann_batch21/processed/for_model/iba1_8407_mask.tif	data/ann_batch21/processed/for_model/iba1_8407_cellbodies.npy
+iba1	8408	iba1_8408	Extra Iba1 For Liang	included	brain_data	1	0	data/ann_batch21/Extra Iba1 For Liang/RoiSet_8408_Iba1_Cell_Bodies_IN.zip	/ix/jbwang/liangyou/fintune/data/brain_data/iba1_8408.tiff	/ix/jbwang/liangyou/fintune/data/brain_data/iba1_8408_marker.tiff	1040	1388	17	17	283	data/ann_batch21/processed/for_model/iba1_8408.tif	data/ann_batch21/processed/for_model/iba1_8408_mask.tif	data/ann_batch21/processed/for_model/iba1_8408_cellbodies.npy
+iba1	8409	iba1_8409	Extra Iba1 For Liang	included	brain_data	1	0	data/ann_batch21/Extra Iba1 For Liang/8409Iba1_RoiSet_Iba1_CellBodies_IN.zip	/ix/jbwang/liangyou/fintune/data/brain_data/iba1_8409.tiff	/ix/jbwang/liangyou/fintune/data/brain_data/iba1_8409_marker.tiff	1040	1388	12	12	0	data/ann_batch21/processed/for_model/iba1_8409.tif	data/ann_batch21/processed/for_model/iba1_8409_mask.tif	data/ann_batch21/processed/for_model/iba1_8409_cellbodies.npy
+iba1	8517	iba1_8517	Extra Iba1 For Liang	included	brain_data	1	0	data/ann_batch21/Extra Iba1 For Liang/Iba1_8517_RoiSet_CellBodies_IN.zip	/ix/jbwang/liangyou/fintune/data/brain_data/iba1_8517.tiff	/ix/jbwang/liangyou/fintune/data/brain_data/iba1_8517_marker.tiff	1040	1388	18	18	69	data/ann_batch21/processed/for_model/iba1_8517.tif	data/ann_batch21/processed/for_model/iba1_8517_mask.tif	data/ann_batch21/processed/for_model/iba1_8517_cellbodies.npy
+neun	400	neun_400	Extra NeuN For Liang	included	brain_data	1	0	data/ann_batch21/Extra NeuN For Liang/NeuN400_RoiSet_CellBodies_IN.zip	/ix/jbwang/liangyou/fintune/data/brain_data/neun_400.tiff	/ix/jbwang/liangyou/fintune/data/brain_data/neun_400_marker.tiff	1040	1388	143	143	58955	data/ann_batch21/processed/for_model/neun_400.tif	data/ann_batch21/processed/for_model/neun_400_mask.tif	data/ann_batch21/processed/for_model/neun_400_cellbodies.npy
+neun	568	neun_568	Extra NeuN For Liang	included	brain_data	1	0	data/ann_batch21/Extra NeuN For Liang/NeuN568_RoiSet_CellBodies_IN.zip	/ix/jbwang/liangyou/fintune/data/brain_data/neun_568.tiff	/ix/jbwang/liangyou/fintune/data/brain_data/neun_568_marker.tiff	1040	1388	132	132	209	data/ann_batch21/processed/for_model/neun_568.tif	data/ann_batch21/processed/for_model/neun_568_mask.tif	data/ann_batch21/processed/for_model/neun_568_cellbodies.npy
+neun	585	neun_585	Extra NeuN For Liang	included	brain_data	1	0	data/ann_batch21/Extra NeuN For Liang/NeuN585_RoiSet_CellBodies_IN.zip	/ix/jbwang/liangyou/fintune/data/brain_data/neun_585.tiff	/ix/jbwang/liangyou/fintune/data/brain_data/neun_585_marker.tiff	1040	1388	96	96	215	data/ann_batch21/processed/for_model/neun_585.tif	data/ann_batch21/processed/for_model/neun_585_mask.tif	data/ann_batch21/processed/for_model/neun_585_cellbodies.npy
+neun	635	neun_635	Extra NeuN For Liang	included	brain_data	1	0	data/ann_batch21/Extra NeuN For Liang/NeuN635_RoiSet_CellBodies_IN.zip	/ix/jbwang/liangyou/fintune/data/brain_data/neun_635.tiff	/ix/jbwang/liangyou/fintune/data/brain_data/neun_635_marker.tiff	1040	1388	93	93	51	data/ann_batch21/processed/for_model/neun_635.tif	data/ann_batch21/processed/for_model/neun_635_mask.tif	data/ann_batch21/processed/for_model/neun_635_cellbodies.npy
+neun	888	neun_888	Extra NeuN For Liang	included	brain_data	1	0	data/ann_batch21/Extra NeuN For Liang/NeuN888_RoiSet_CellBodies_IN.zip	/ix/jbwang/liangyou/fintune/data/brain_data/neun_888.tiff	/ix/jbwang/liangyou/fintune/data/brain_data/neun_888_marker.tiff	1040	1388	80	80	22	data/ann_batch21/processed/for_model/neun_888.tif	data/ann_batch21/processed/for_model/neun_888_mask.tif	data/ann_batch21/processed/for_model/neun_888_cellbodies.npy
+neun	1360	neun_1360	Extra NeuN For Liang	included	brain_data	1	0	data/ann_batch21/Extra NeuN For Liang/NeuN1360_RoiSet_CellBodies_IN.zip	/ix/jbwang/liangyou/fintune/data/brain_data/neun_1360.tiff	/ix/jbwang/liangyou/fintune/data/brain_data/neun_1360_marker.tiff	1040	1388	87	87	105	data/ann_batch21/processed/for_model/neun_1360.tif	data/ann_batch21/processed/for_model/neun_1360_mask.tif	data/ann_batch21/processed/for_model/neun_1360_cellbodies.npy
+neun	1492	neun_1492	Extra NeuN For Liang	included	brain_data	1	0	data/ann_batch21/Extra NeuN For Liang/NeuN1492_RoiSet_CellBodies_IN.zip	/ix/jbwang/liangyou/fintune/data/brain_data/neun_1492.tiff	/ix/jbwang/liangyou/fintune/data/brain_data/neun_1492_marker.tiff	1040	1388	60	60	28	data/ann_batch21/processed/for_model/neun_1492.tif	data/ann_batch21/processed/for_model/neun_1492_mask.tif	data/ann_batch21/processed/for_model/neun_1492_cellbodies.npy
+neun	1534	neun_1534	Extra NeuN For Liang	included	brain_data	1	0	data/ann_batch21/Extra NeuN For Liang/NeuN1534_RoiSet_CellBodies_IN.zip	/ix/jbwang/liangyou/fintune/data/brain_data/neun_1534.tiff	/ix/jbwang/liangyou/fintune/data/brain_data/neun_1534_marker.tiff	1040	1388	81	81	23	data/ann_batch21/processed/for_model/neun_1534.tif	data/ann_batch21/processed/for_model/neun_1534_mask.tif	data/ann_batch21/processed/for_model/neun_1534_cellbodies.npy
+neun	2322	neun_2322	Extra NeuN For Liang	skipped_missing_image	brain_data	0	1	data/ann_batch21/Extra NeuN For Liang/NeuN2322_RoiSet_CellBodies_IN.zip	/ix/jbwang/liangyou/fintune/data/brain_data/neun_2322.tiff	/ix/jbwang/liangyou/fintune/data/brain_data/neun_2322_marker.tiff								
+neun	3067	neun_3067	Extra NeuN For Liang	included	brain_data	1	0	data/ann_batch21/Extra NeuN For Liang/NeuN3067_RoiSet_CellBodies_IN.zip	/ix/jbwang/liangyou/fintune/data/brain_data/neun_3067.tiff	/ix/jbwang/liangyou/fintune/data/brain_data/neun_3067_marker.tiff	1040	1388	59	59	74	data/ann_batch21/processed/for_model/neun_3067.tif	data/ann_batch21/processed/for_model/neun_3067_mask.tif	data/ann_batch21/processed/for_model/neun_3067_cellbodies.npy
diff --git a/raw_annotations/processed/new_only_definition.md b/raw_annotations/processed/new_only_definition.md
new file mode 100644
index 0000000000000000000000000000000000000000..843be691c2a5d31d4e3e396d5d91a809aa4120c6
--- /dev/null
+++ b/raw_annotations/processed/new_only_definition.md
@@ -0,0 +1,41 @@
+# ann_batch21: New-Only Definition
+
+Date recorded: 2026-04-22
+
+Definition used here:
+
+- `new` means the `(marker, donor)` pair did **not** already exist in `data/brain_data/*_cellbodies.npy`.
+- This is based on comparison against the pre-existing ground-truth set used by the repo before `ann_batch21`.
+- For this batch, `new` is a metadata definition, not just "sits inside a new folder".
+
+Files:
+
+- Full processed manifest: `data/ann_batch21/processed/manifest.tsv`
+- New-only filtered manifest: `data/ann_batch21/processed/new_only_manifest.tsv`
+
+New rows found in `ann_batch21`:
+
+- Included in evaluation/model input (`10`, all GFAP):
+  - `gfap_4192`
+  - `gfap_4549`
+  - `gfap_4701`
+  - `gfap_4764`
+  - `gfap_5043`
+  - `gfap_6383`
+  - `gfap_6487`
+  - `gfap_6535`
+  - `gfap_6800`
+  - `gfap_6838`
+- New but not included in evaluation (`1`):
+  - `neun_2322`
+  - reason: `skipped_missing_image` because `data/brain_data/neun_2322.tiff` and `data/brain_data/neun_2322_marker.tiff` were not present locally during preprocessing
+
+Therefore:
+
+- `new-only` evaluation subset used here = the `10` GFAP samples above
+- `new-only` metrics do **not** include `neun_2322`
+
+New-only metrics on the included `10` samples:
+
+- `generic_cpsam_l40s_20260422`: precision `0.7321`, recall `0.8362`, F1 `0.7807`
+- `allgt_cpsam_l40s_20260422`: precision `0.7143`, recall `0.8405`, F1 `0.7723`
diff --git a/raw_annotations/processed/new_only_manifest.tsv b/raw_annotations/processed/new_only_manifest.tsv
new file mode 100644
index 0000000000000000000000000000000000000000..a2933d63c5e3ba07ae23a789e6bd115fa1814caf
--- /dev/null
+++ b/raw_annotations/processed/new_only_manifest.tsv
@@ -0,0 +1,12 @@
+marker	donor	stem	source_group	status	image_source	overlap_with_existing_gt	is_new_vs_existing_gt	roi_zip	dapi_source	marker_source	height	width	roi_count	mask_object_count	mask_overlap_pixels	for_model_image	for_model_mask	for_model_cellbodies_npy
+gfap	4192	gfap_4192	GFAP_batch2and1	included	ann_batch21	0	1	data/ann_batch21/GFAP_batch2and1/GFAP_4192/RoiSet_CellBodies_Final.zip	data/ann_batch21/GFAP_batch2and1/GFAP_4192/Snap-4192_b0c0x0-1388y0-1040.tiff	data/ann_batch21/GFAP_batch2and1/GFAP_4192/Snap-4192_b0c1x0-1388y0-1040.tiff	1040	1388	25	25	0	data/ann_batch21/processed/for_model/gfap_4192.tif	data/ann_batch21/processed/for_model/gfap_4192_mask.tif	data/ann_batch21/processed/for_model/gfap_4192_cellbodies.npy
+gfap	4549	gfap_4549	GFAP_batch2and1	included	ann_batch21	0	1	data/ann_batch21/GFAP_batch2and1/GFAP_4549/RoiSet_CellBodies_Final.zip	data/ann_batch21/GFAP_batch2and1/GFAP_4549/Snap-4549_b0c0x0-1388y0-1040.tiff	data/ann_batch21/GFAP_batch2and1/GFAP_4549/Snap-4549_b0c1x0-1388y0-1040.tiff	1040	1388	15	15	0	data/ann_batch21/processed/for_model/gfap_4549.tif	data/ann_batch21/processed/for_model/gfap_4549_mask.tif	data/ann_batch21/processed/for_model/gfap_4549_cellbodies.npy
+gfap	4701	gfap_4701	GFAP_batch2and1	included	ann_batch21	0	1	data/ann_batch21/GFAP_batch2and1/GFAP_4701/RoiSet_CellBodies_Final.zip	data/ann_batch21/GFAP_batch2and1/GFAP_4701/Snap-4701_b0c0x0-1388y0-1040.tiff	data/ann_batch21/GFAP_batch2and1/GFAP_4701/Snap-4701_b0c1x0-1388y0-1040.tiff	1040	1388	23	23	0	data/ann_batch21/processed/for_model/gfap_4701.tif	data/ann_batch21/processed/for_model/gfap_4701_mask.tif	data/ann_batch21/processed/for_model/gfap_4701_cellbodies.npy
+gfap	4764	gfap_4764	GFAP_batch2and1	included	ann_batch21	0	1	data/ann_batch21/GFAP_batch2and1/GFAP_4764/RoiSet_CellBodies_Final.zip	data/ann_batch21/GFAP_batch2and1/GFAP_4764/Snap-4764_b0c0x0-1388y0-1040.tiff	data/ann_batch21/GFAP_batch2and1/GFAP_4764/Snap-4764_b0c1x0-1388y0-1040.tiff	1040	1388	29	29	6	data/ann_batch21/processed/for_model/gfap_4764.tif	data/ann_batch21/processed/for_model/gfap_4764_mask.tif	data/ann_batch21/processed/for_model/gfap_4764_cellbodies.npy
+gfap	5043	gfap_5043	GFAP_batch2and1	included	ann_batch21	0	1	data/ann_batch21/GFAP_batch2and1/GFAP_5043/RoiSet_CellBodies_Final.zip	data/ann_batch21/GFAP_batch2and1/GFAP_5043/Snap-5043_b0c0x0-1388y0-1040.tiff	data/ann_batch21/GFAP_batch2and1/GFAP_5043/Snap-5043_b0c1x0-1388y0-1040.tiff	1040	1388	25	25	0	data/ann_batch21/processed/for_model/gfap_5043.tif	data/ann_batch21/processed/for_model/gfap_5043_mask.tif	data/ann_batch21/processed/for_model/gfap_5043_cellbodies.npy
+gfap	6383	gfap_6383	GFAP_batch2and1	included	ann_batch21	0	1	data/ann_batch21/GFAP_batch2and1/GFAP_6383/RoiSet_CellBodies_Final.zip	data/ann_batch21/GFAP_batch2and1/GFAP_6383/Snap-6383_b0c0x0-1388y0-1040.tiff	data/ann_batch21/GFAP_batch2and1/GFAP_6383/Snap-6383_b0c1x0-1388y0-1040.tiff	1040	1388	11	11	0	data/ann_batch21/processed/for_model/gfap_6383.tif	data/ann_batch21/processed/for_model/gfap_6383_mask.tif	data/ann_batch21/processed/for_model/gfap_6383_cellbodies.npy
+gfap	6487	gfap_6487	GFAP_batch2and1	included	ann_batch21	0	1	data/ann_batch21/GFAP_batch2and1/GFAP_6487/RoiSet_CellBodies_Final.zip	data/ann_batch21/GFAP_batch2and1/GFAP_6487/Snap-6487_b0c0x0-1388y0-1040.tiff	data/ann_batch21/GFAP_batch2and1/GFAP_6487/Snap-6487_b0c1x0-1388y0-1040.tiff	1040	1388	24	24	0	data/ann_batch21/processed/for_model/gfap_6487.tif	data/ann_batch21/processed/for_model/gfap_6487_mask.tif	data/ann_batch21/processed/for_model/gfap_6487_cellbodies.npy
+gfap	6535	gfap_6535	GFAP_batch2and1	included	ann_batch21	0	1	data/ann_batch21/GFAP_batch2and1/GFAP_6535/RoiSet_CellBodies_Final.zip	data/ann_batch21/GFAP_batch2and1/GFAP_6535/Snap-6535_b0c0x0-1388y0-1040.tiff	data/ann_batch21/GFAP_batch2and1/GFAP_6535/Snap-6535_b0c1x0-1388y0-1040.tiff	1040	1388	19	19	0	data/ann_batch21/processed/for_model/gfap_6535.tif	data/ann_batch21/processed/for_model/gfap_6535_mask.tif	data/ann_batch21/processed/for_model/gfap_6535_cellbodies.npy
+gfap	6800	gfap_6800	GFAP_batch2and1	included	ann_batch21	0	1	data/ann_batch21/GFAP_batch2and1/GFAP_6800/RoiSet_CellBodies_Final.zip	data/ann_batch21/GFAP_batch2and1/GFAP_6800/Snap-6800_b0c0x0-1388y0-1040.tiff	data/ann_batch21/GFAP_batch2and1/GFAP_6800/Snap-6800_b0c1x0-1388y0-1040.tiff	1040	1388	21	21	0	data/ann_batch21/processed/for_model/gfap_6800.tif	data/ann_batch21/processed/for_model/gfap_6800_mask.tif	data/ann_batch21/processed/for_model/gfap_6800_cellbodies.npy
+gfap	6838	gfap_6838	GFAP_batch2and1	included	ann_batch21	0	1	data/ann_batch21/GFAP_batch2and1/GFAP_6838/RoiSet_CellBodies_Final.zip	data/ann_batch21/GFAP_batch2and1/GFAP_6838/Snap-6838_b0c0x0-1388y0-1040.tiff	data/ann_batch21/GFAP_batch2and1/GFAP_6838/Snap-6838_b0c1x0-1388y0-1040.tiff	1040	1388	40	40	12	data/ann_batch21/processed/for_model/gfap_6838.tif	data/ann_batch21/processed/for_model/gfap_6838_mask.tif	data/ann_batch21/processed/for_model/gfap_6838_cellbodies.npy
+neun	2322	neun_2322	Extra NeuN For Liang	skipped_missing_image	brain_data	0	1	data/ann_batch21/Extra NeuN For Liang/NeuN2322_RoiSet_CellBodies_IN.zip	/ix/jbwang/liangyou/fintune/data/brain_data/neun_2322.tiff	/ix/jbwang/liangyou/fintune/data/brain_data/neun_2322_marker.tiff								
diff --git a/raw_annotations/processed/summary.json b/raw_annotations/processed/summary.json
new file mode 100644
index 0000000000000000000000000000000000000000..269e693334c1f91e237515bf3a71b09389f93d2a
--- /dev/null
+++ b/raw_annotations/processed/summary.json
@@ -0,0 +1,19 @@
+{
+  "ann_root": "/ix/jbwang/liangyou/fintune/data/ann_batch21",
+  "out_root": "/ix/jbwang/liangyou/fintune/data/ann_batch21/processed",
+  "for_model_dir": "/ix/jbwang/liangyou/fintune/data/ann_batch21/processed/for_model",
+  "n_total": 61,
+  "n_included": 60,
+  "n_skipped": 1,
+  "n_overlap_with_existing_gt": 50,
+  "n_new_vs_existing_gt": 10,
+  "included_by_marker": {
+    "gfap": 40,
+    "iba1": 11,
+    "neun": 9
+  },
+  "skipped_stems": [
+    "neun_2322"
+  ],
+  "manifest_tsv": "/ix/jbwang/liangyou/fintune/data/ann_batch21/processed/manifest.tsv"
+}
\ No newline at end of file