diff --git a/immunoSEQ/rheumatoid_arthritis/metadata.tsv b/immunoSEQ/rheumatoid_arthritis/metadata.tsv deleted file mode 100644 index b50b28a87d64ff2bf28517e158ac993e5ed72763..0000000000000000000000000000000000000000 --- a/immunoSEQ/rheumatoid_arthritis/metadata.tsv +++ /dev/null @@ -1,92 +0,0 @@ -participant_label specimen_label disease CV_fold sample_name total_templates productive_templates fraction_productive total_rearrangements productive_rearrangements productive_simpson_clonality max_productive_frequency locus sample_tags sku test_name disease_label fold -RA3 RA3-3years Rheumatoid Arthritis 1 RA3-3years 75878 47734 0.6291 7430 5972 0.5121 0.471969664 TCRB Rheumatoid Arthritis 1 -RA1 RA1-7months Rheumatoid Arthritis 0 RA1-7months 35540 33704 0.9483 3203 2573 0.4794 0.412324935 TCRB Rheumatoid Arthritis 0 -RA2 RA2-18months Rheumatoid Arthritis 1 RA2-18months 28806 21808 0.7571 9438 7708 0.1203 0.078182317 TCRB Rheumatoid Arthritis 1 -HC8 HC8 Healthy 2 HC8 39179 33080 0.8443 17992 15060 0.0449 0.026844015 TCRB Healthy 2 -HC9 HC9 Healthy 0 HC9 44432 37343 0.8405 18793 15101 0.0658 0.0302868 TCRB Healthy 0 -HC11 HC11 Healthy 2 HC11 72573 60197 0.8295 52076 43148 0.0147 0.005515225 TCRB Healthy 2 -HC17 HC17 Healthy 2 HC17 62214 52286 0.8404 36228 30233 0.0724 0.070841141 TCRB Healthy 2 -HC10 HC10 Healthy 2 HC10 63549 52695 0.8292 39422 32642 0.03 0.01700351 TCRB Healthy 2 -HC18 HC18 Healthy 2 HC18 76101 67056 0.8811 17149 14062 0.1857 0.120317347 TCRB Healthy 2 -HC19 HC19 Healthy 1 HC19 54855 48119 0.8772 10221 8392 0.2195 0.175419271 TCRB Healthy 1 -HC20 HC20 Healthy 1 HC20 80658 70698 0.8765 24415 21190 0.1034 0.071175985 TCRB Healthy 1 -RA72 RA72 Rheumatoid Arthritis 1 RA72 39291 32459 0.8261 20728 17155 0.0369 0.017221727 TCRB Rheumatoid Arthritis 1 -RA74 RA74 Rheumatoid Arthritis 2 RA74 53976 41035 0.7602 19501 15778 0.0801 0.035067625 TCRB Rheumatoid Arthritis 2 -RA75 RA75 Rheumatoid Arthritis 0 RA75 83754 71293 0.8512 28084 23299 0.0904 0.047367904 TCRB Rheumatoid Arthritis 0 -RA76 RA76 Rheumatoid Arthritis 2 RA76 60117 47526 0.7906 36846 29130 0.022 0.009405378 TCRB Rheumatoid Arthritis 2 -RA79 RA79 Rheumatoid Arthritis 0 RA79 12823 9414 0.7341 3915 2947 0.1831 0.103462927 TCRB Rheumatoid Arthritis 0 -RA80 RA80 Rheumatoid Arthritis 0 RA80 51626 40409 0.7827 27094 21578 0.0454 0.019970799 TCRB Rheumatoid Arthritis 0 -RA24 RA24 Rheumatoid Arthritis 0 RA24 56170 43267 0.7703 24672 19894 0.0803 0.053112071 TCRB HLA MHC Class I Rheumatoid Arthritis 0 -RA81 RA81 Rheumatoid Arthritis 2 RA81 55697 44532 0.7995 12628 10224 0.2089 0.191008717 TCRB Rheumatoid Arthritis 2 -RA82 RA82 Rheumatoid Arthritis 2 RA82 52313 43742 0.8362 21259 17824 0.1416 0.112454847 TCRB Rheumatoid Arthritis 2 -RA25 RA25 Rheumatoid Arthritis 0 RA25 48192 38011 0.7887 29017 23956 0.0525 0.042145696 TCRB HLA MHC Class I Rheumatoid Arthritis 0 -HC12 HC12 Healthy 0 HC12 59854 46310 0.7737 33309 26574 0.0896 0.062275965 TCRB Healthy 0 -HC13 HC13 Healthy 1 HC13 58937 48579 0.8243 30677 24398 0.0557 0.045884024 TCRB Healthy 1 -HC14 HC14 Healthy 0 HC14 51995 43104 0.829 18387 14697 0.0522 0.02419729 TCRB Healthy 0 -HC15 HC15 Healthy 1 HC15 54821 46599 0.85 10997 8848 0.1345 0.070774049 TCRB Healthy 1 -HC16 HC16 Healthy 0 HC16 52699 44264 0.8399 30554 24518 0.1233 0.110654257 TCRB Healthy 0 -RA52 RA52 Rheumatoid Arthritis 0 RA52 59096 47929 0.811 24437 19753 0.047 0.018569134 TCRB Rheumatoid Arthritis 0 -RA53 RA53 Rheumatoid Arthritis 2 RA53 70454 54870 0.7788 21325 17200 0.1306 0.10703481 TCRB Rheumatoid Arthritis 2 -RA54 RA54 Rheumatoid Arthritis 0 RA54 51840 44091 0.8505 30411 25115 0.0663 0.051439069 TCRB Rheumatoid Arthritis 0 -RA55 RA55 Rheumatoid Arthritis 0 RA55 61136 50929 0.833 42388 35951 0.0355 0.018358892 TCRB Rheumatoid Arthritis 0 -RA56 RA56 Rheumatoid Arthritis 1 RA56 43010 35000 0.8138 25652 20638 0.0245 0.007771429 TCRB Rheumatoid Arthritis 1 -RA57 RA57 Rheumatoid Arthritis 0 RA57 56052 47002 0.8385 22378 18376 0.0508 0.027296711 TCRB HLA MHC Class I Rheumatoid Arthritis 0 -RA58 RA58 Rheumatoid Arthritis 2 RA58 64146 49475 0.7713 29954 23176 0.0719 0.052915614 TCRB Rheumatoid Arthritis 2 -RA59 RA59 Rheumatoid Arthritis 0 RA59 66756 55699 0.8344 33866 28052 0.0439 0.021059625 TCRB Rheumatoid Arthritis 0 -RA60 RA60 Rheumatoid Arthritis 0 RA60 54366 44672 0.8217 14043 11225 0.1358 0.068476901 TCRB Rheumatoid Arthritis 0 -RA62 RA62 Rheumatoid Arthritis 2 RA62 31076 25219 0.8115 11805 9437 0.1664 0.136325791 TCRB Rheumatoid Arthritis 2 -RA63 RA63 Rheumatoid Arthritis 2 RA63 13973 11527 0.8249 6021 4849 0.1035 0.077296779 TCRB HLA MHC Class I Rheumatoid Arthritis 2 -RA65 RA65 Rheumatoid Arthritis 0 RA65 53130 41478 0.7807 25467 20986 0.1081 0.089131586 TCRB Rheumatoid Arthritis 0 -RA66 RA66 Rheumatoid Arthritis 0 RA66 66158 47892 0.7239 17399 14244 0.2557 0.249979123 TCRB Rheumatoid Arthritis 0 -RA68 RA68 Rheumatoid Arthritis 1 RA68 53389 40992 0.7678 22965 18647 0.0686 0.046496876 TCRB Rheumatoid Arthritis 1 -RA70 RA70 Rheumatoid Arthritis 2 RA70 21533 18161 0.8434 10739 8951 0.0496 0.03452453 TCRB Rheumatoid Arthritis 2 -RA26 RA26 Rheumatoid Arthritis 1 RA26 22095 18318 0.8291 13960 11447 0.0248 0.012228409 TCRB Rheumatoid Arthritis 1 -RA28 RA28 Rheumatoid Arthritis 1 RA28 21922 17544 0.8003 15765 12934 0.0302 0.014534884 TCRB Rheumatoid Arthritis 1 -RA29 RA29 Rheumatoid Arthritis 1 RA29 52896 44767 0.8463 27553 22765 0.1981 0.194495946 TCRB Rheumatoid Arthritis 1 -RA30 RA30 Rheumatoid Arthritis 1 RA30 19341 15647 0.809 8327 6692 0.1211 0.084872499 TCRB Rheumatoid Arthritis 1 -RA31 RA31 Rheumatoid Arthritis 0 RA31 9050 7501 0.8288 6286 5239 0.0296 0.011865085 TCRB Rheumatoid Arthritis 0 -RA32 RA32 Rheumatoid Arthritis 1 RA32 26643 22193 0.833 15518 12822 0.0618 0.051908258 TCRB Rheumatoid Arthritis 1 -RA33 RA33 Rheumatoid Arthritis 2 RA33 38973 30972 0.7947 11505 8855 0.0912 0.060893711 TCRB HLA MHC Class I Rheumatoid Arthritis 2 -RA37 RA37 Rheumatoid Arthritis 1 RA37 4997 3818 0.7641 2357 1814 0.0662 0.026191723 TCRB Rheumatoid Arthritis 1 -RA40 RA40 Rheumatoid Arthritis 2 RA40 33820 27801 0.822 6674 5274 0.2087 0.112082303 TCRB Rheumatoid Arthritis 2 -RA41 RA41 Rheumatoid Arthritis 2 RA41 11912 9503 0.7978 8701 6974 0.0228 0.009681153 TCRB Rheumatoid Arthritis 2 -RA46 RA46 Rheumatoid Arthritis 2 RA46 59376 47163 0.7943 23872 19708 0.0729 0.031847 TCRB HLA MHC Class I Rheumatoid Arthritis 2 -RA47 RA47 Rheumatoid Arthritis 2 RA47 56908 46422 0.8157 20130 16724 0.0787 0.054801602 TCRB Rheumatoid Arthritis 2 -RA48 RA48 Rheumatoid Arthritis 2 RA48 50271 41455 0.8246 28549 23409 0.0421 0.032493066 TCRB Rheumatoid Arthritis 2 -RA49 RA49 Rheumatoid Arthritis 0 RA49 74000 60969 0.8239 44609 37700 0.0348 0.018320786 TCRB HLA MHC Class I Rheumatoid Arthritis 0 -RA50 RA50 Rheumatoid Arthritis 1 RA50 69969 61826 0.8836 23914 20397 0.088 0.0505936 TCRB Rheumatoid Arthritis 1 -RA51 RA51 Rheumatoid Arthritis 1 RA51 56067 47615 0.8493 16950 14096 0.1558 0.081444919 TCRB Rheumatoid Arthritis 1 -HC7 HC7 Healthy 1 HC7 59627 50923 0.854 25521 20303 0.0766 0.043753505 TCRB "CD8+, Peripheral blood lymphocytes (PBL), T cells" Healthy 1 -HC6 HC6 Healthy 1 HC6 57125 45559 0.7975 21558 17217 0.0852 0.041231256 TCRB "CD8+, Peripheral blood lymphocytes (PBL), T cells" Healthy 1 -HC5 HC5 Healthy 1 HC5 59340 41190 0.6941 13375 10959 0.256 0.24665913 TCRB "CD8+, Peripheral blood lymphocytes (PBL), T cells" Healthy 1 -HC4 HC4 Healthy 0 HC4 69944 58236 0.8326 20493 16518 0.0887 0.053772524 TCRB "CD8+, Peripheral blood lymphocytes (PBL), T cells" Healthy 0 -HC3 HC3 Healthy 2 HC3 63066 56523 0.8963 16464 13774 0.2668 0.259920627 TCRB "CD8+, Peripheral blood lymphocytes (PBL), T cells" Healthy 2 -HC2 HC2 Healthy 0 HC2 72691 58930 0.8107 36962 29818 0.0226 0.007905783 TCRB "CD8+, Peripheral blood lymphocytes (PBL), T cells" Healthy 0 -HC1 HC1 Healthy 0 HC1 83507 64572 0.7733 13194 10687 0.1736 0.118211403 TCRB "CD8+, Peripheral blood lymphocytes (PBL), T cells" Healthy 0 -RA23 RA23-SF-CD8 Rheumatoid Arthritis 1 RA23-SF-CD8 18828 15415 0.8187 5754 4599 0.0716 0.041477062 TCRB "CD8+, Rheumatoid Arthritis, Synovial fluid, T cells" Rheumatoid Arthritis 1 -RA23 RA23 Rheumatoid Arthritis 1 RA23 7747 6575 0.8487 5910 4766 0.084 0.057873074 TCRB "CD8+, Peripheral blood lymphocytes (PBL), Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 1 -RA23 RA23-CD4 Rheumatoid Arthritis 1 RA23-CD4 23735 19531 0.8229 21125 17042 0.0114 0.005459813 TCRB "CD4+, Peripheral blood lymphocytes (PBL), Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 1 -RA22 RA22 Rheumatoid Arthritis 2 RA22 49444 38110 0.7708 21309 17226 0.0965 0.069929116 TCRB "CD8+, HLA MHC Class I, Peripheral blood lymphocytes (PBL), Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 2 -RA21 RA21 Rheumatoid Arthritis 0 RA21 62622 50032 0.799 39430 31137 0.0415 0.029714275 TCRB "CD8+, Peripheral blood lymphocytes (PBL), Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 0 -RA20 RA20 Rheumatoid Arthritis 0 RA20 20607 15320 0.7434 4680 3691 0.2213 0.162258536 TCRB "CD4-, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 0 -RA19 RA19 Rheumatoid Arthritis 2 RA19 11341 9389 0.8279 6587 5276 0.1039 0.079631694 TCRB "CD4-, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 2 -RA18 RA18 Rheumatoid Arthritis 1 RA18 6595 3788 0.5744 2212 1620 0.1621 0.101727076 TCRB "CD4-, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 1 -RA17 RA17 Rheumatoid Arthritis 2 RA17 7396 6164 0.8334 2966 2314 0.2747 0.202736616 TCRB "CD4-, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 2 -RA15 RA15 Rheumatoid Arthritis 1 RA15 31027 25964 0.8368 20563 16521 0.0685 0.045264199 TCRB "CD4-, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 1 -RA13 RA13 Rheumatoid Arthritis 2 RA13 27140 21465 0.7909 9311 7317 0.1334 0.091548055 TCRB "CD4-, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 2 -RA12 RA12 Rheumatoid Arthritis 0 RA12 25115 18714 0.7451 6783 5350 0.228 0.157300845 TCRB "CD4-, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 0 -RA6 RA6-SF Rheumatoid Arthritis 1 RA6-SF 2806 2204 0.7855 1529 1175 0.0914 0.060221322 TCRB "Rheumatoid Arthritis, Synovial fluid" Rheumatoid Arthritis 1 -RA6 RA6-CD4 Rheumatoid Arthritis 1 RA6-CD4 38308 32821 0.8568 28134 22891 0.0969 0.064752638 TCRB "CD8-, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 1 -RA6 RA6 Rheumatoid Arthritis 1 RA6 35569 29574 0.8315 9525 7650 0.2096 0.111250617 TCRB "CD4-, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 1 -RA5 RA5 Rheumatoid Arthritis 2 RA5 46735 40218 0.8606 11228 8895 0.3024 0.290390968 TCRB "CD8+, T Cell Large Granular Lymphocyte Leukemia (LGL), T cells" Rheumatoid Arthritis 2 -RA16 RA16 Rheumatoid Arthritis 2 RA16 12844 9993 0.778 6295 4858 0.1333 0.067450158 TCRB "CD8+, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 2 -RA4 RA4 Rheumatoid Arthritis 0 RA4 28409 19607 0.6902 15465 12345 0.1566 0.132319644 TCRB "CD8+, HLA MHC Class I, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 0 -RA3 RA3 Rheumatoid Arthritis 1 RA3 39504 23246 0.5884 7216 5707 0.5259 0.510262191 TCRB "CD8+, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 1 -RA10 RA10 Rheumatoid Arthritis 1 RA10 17832 11947 0.67 4363 3403 0.2496 0.161554158 TCRB "CD8+, HLA MHC Class I, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 1 -RA2 RA2 Rheumatoid Arthritis 1 RA2 16162 12604 0.7799 8307 6630 0.1339 0.078126013 TCRB "CD8+, HLA MHC Class I, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 1 -RA9 RA9 Rheumatoid Arthritis 0 RA9 25652 22457 0.8754 14528 11894 0.2056 0.171679258 TCRB "CD8+, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 0 -RA1 RA1 Rheumatoid Arthritis 0 RA1 33857 32028 0.946 4757 3788 0.4576 0.339007616 TCRB "CD8+, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 0 -RA7 RA7 Rheumatoid Arthritis 1 RA7 17120 11917 0.6961 5711 4329 0.2015 0.137814626 TCRB "CD8+, HLA MHC Class I, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 1 -RA8 RA8 Rheumatoid Arthritis 1 RA8 9206 7397 0.8035 7996 6333 0.0356 0.019681411 TCRB "CD8+, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 1 -RA14 RA14 Rheumatoid Arthritis 2 RA14 7846 5777 0.7363 4840 3683 0.1116 0.079763874 TCRB "CD8+, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 2 -RA11 RA11 Rheumatoid Arthritis 0 RA11 26221 22126 0.8438 9713 7976 0.2986 0.27503103 TCRB "CD8+, Rheumatoid Arthritis, T cells" Rheumatoid Arthritis 0 \ No newline at end of file diff --git a/immunoSEQ/rheumatoid_arthritis/repertoires/HC1.tsv.gz b/immunoSEQ/rheumatoid_arthritis/repertoires/HC1.tsv.gz deleted file mode 100644 index 9e45943bc3191ddc1bf509335c49ef4c4049414e..0000000000000000000000000000000000000000 --- a/immunoSEQ/rheumatoid_arthritis/repertoires/HC1.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:bb923410484d7e647efc8664f1eec0a3b3239a00db9edcd0ccaf8990d649aeae -size 399647 diff --git a/immunoSEQ/rheumatoid_arthritis/repertoires/HC10.tsv.gz 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mode 100644 index a2616afcf6635db51fb4d43f34e1d4b8f5c1ccbd..0000000000000000000000000000000000000000 --- a/immunoSEQ/rheumatoid_arthritis/repertoires/HC12.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:3d775b6825f7648856229337169d264b94427beb22fac6324095a24fb0526bca -size 897855 diff --git a/immunoSEQ/rheumatoid_arthritis/repertoires/HC13.tsv.gz b/immunoSEQ/rheumatoid_arthritis/repertoires/HC13.tsv.gz deleted file mode 100644 index b2bc8fde14ba1e6fc27b6be4e7758c03afb15a31..0000000000000000000000000000000000000000 --- a/immunoSEQ/rheumatoid_arthritis/repertoires/HC13.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:d398d66bb9fdd9593c60be2c2e53ba51c7ba2e2d8e567fa7d0adcab16409af91 -size 851225 diff --git a/immunoSEQ/rheumatoid_arthritis/repertoires/HC14.tsv.gz b/immunoSEQ/rheumatoid_arthritis/repertoires/HC14.tsv.gz deleted file mode 100644 index 0e29f270530902d073ee2345e31cae127931944e..0000000000000000000000000000000000000000 --- a/immunoSEQ/rheumatoid_arthritis/repertoires/HC14.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:2d927b05a3bd44197d190a5e79b3efc74f7e9e802db39fad50ac1f8adf048c94 -size 543836 diff --git a/immunoSEQ/rheumatoid_arthritis/repertoires/HC15.tsv.gz b/immunoSEQ/rheumatoid_arthritis/repertoires/HC15.tsv.gz deleted file mode 100644 index fb1d04e64b44d864fa41516b3c6d712059af9c52..0000000000000000000000000000000000000000 --- a/immunoSEQ/rheumatoid_arthritis/repertoires/HC15.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:6f1335eab0e7d746f33b11d05787d4334fecb411e55fb537140ebbc154adc921 -size 325337 diff --git a/immunoSEQ/rheumatoid_arthritis/repertoires/HC16.tsv.gz b/immunoSEQ/rheumatoid_arthritis/repertoires/HC16.tsv.gz deleted file mode 100644 index 0c195a4f7287a2fac0b546e9490d131af3e14a85..0000000000000000000000000000000000000000 --- a/immunoSEQ/rheumatoid_arthritis/repertoires/HC16.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:8e8c6e06b9df9b96c3362488a0deb28f01b092791e2f4c0caf0da1ecc4d93064 -size 868965 diff --git a/immunoSEQ/rheumatoid_arthritis/repertoires/HC17.tsv.gz b/immunoSEQ/rheumatoid_arthritis/repertoires/HC17.tsv.gz deleted file mode 100644 index d5dd60ee86bad2186a03920ed2447335d8324b21..0000000000000000000000000000000000000000 --- a/immunoSEQ/rheumatoid_arthritis/repertoires/HC17.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:a53bc0f65500e6a724177c43266331a0d9544b079bb990bc2eb001e1c9f15ed0 -size 1086662 diff --git a/immunoSEQ/rheumatoid_arthritis/repertoires/HC18.tsv.gz b/immunoSEQ/rheumatoid_arthritis/repertoires/HC18.tsv.gz deleted file mode 100644 index 07ab1c7091ac3f06d71f4aefd3fb63e35bd311c7..0000000000000000000000000000000000000000 --- a/immunoSEQ/rheumatoid_arthritis/repertoires/HC18.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:aaa0e9072ed63750295e6586df2f29c643af36410804f5636b4cf8b44484856d -size 491182 diff --git a/immunoSEQ/rheumatoid_arthritis/repertoires/HC19.tsv.gz b/immunoSEQ/rheumatoid_arthritis/repertoires/HC19.tsv.gz deleted file mode 100644 index fc143787d2e83e94bac8933b151a9c9628aa7fcc..0000000000000000000000000000000000000000 --- a/immunoSEQ/rheumatoid_arthritis/repertoires/HC19.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:23c1dd0a92af31d9f3f8cfb80510267568cd1ef71ced729a59926a37fa799daf -size 312168 diff --git a/immunoSEQ/rheumatoid_arthritis/repertoires/HC2.tsv.gz b/immunoSEQ/rheumatoid_arthritis/repertoires/HC2.tsv.gz deleted file mode 100644 index 509bdd7f63c4fcfd0772b4efa2582d7194b4b674..0000000000000000000000000000000000000000 --- a/immunoSEQ/rheumatoid_arthritis/repertoires/HC2.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:eaac1ec91ca05cc849468e9f81d7f411dda80fd7caaf10baa03779b0a74e88fa -size 1112385 diff --git a/immunoSEQ/rheumatoid_arthritis/repertoires/HC20.tsv.gz b/immunoSEQ/rheumatoid_arthritis/repertoires/HC20.tsv.gz deleted file mode 100644 index 432db08fc870b8b53fc730c0618a8db8934e151a..0000000000000000000000000000000000000000 --- a/immunoSEQ/rheumatoid_arthritis/repertoires/HC20.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:7f5fae8224abdb04524fef8138c95dd6e1c8d574fe4b25d662ccbd40b0a360f3 -size 752339 diff --git a/immunoSEQ/rheumatoid_arthritis/repertoires/HC3.tsv.gz b/immunoSEQ/rheumatoid_arthritis/repertoires/HC3.tsv.gz deleted file mode 100644 index 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6486a19b0dbb9d90f61fc37ae3b602a454d49e3b..0000000000000000000000000000000000000000 --- a/immunoSEQ/rheumatoid_arthritis/repertoires/RA82.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:1e4c9c6807afbf3bf358452f3b53ab09f23275e8ed34ba85ede9b516cce56f57 -size 636837 diff --git a/immunoSEQ/rheumatoid_arthritis/repertoires/RA9.tsv.gz b/immunoSEQ/rheumatoid_arthritis/repertoires/RA9.tsv.gz deleted file mode 100644 index 41503261edd7c54040dec114c8da1ba19c7b6313..0000000000000000000000000000000000000000 --- a/immunoSEQ/rheumatoid_arthritis/repertoires/RA9.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:2701ad2cdf27196aa68c3c76504a991756219bed7d990f71b3f47ffc0f10ff29 -size 437908 diff --git a/immunoSEQ/tuberculosis/metadata.tsv b/immunoSEQ/tuberculosis/metadata.tsv deleted file mode 100644 index 2dab86d7d177b8a1109721b93ae748e58c3a7f30..0000000000000000000000000000000000000000 --- a/immunoSEQ/tuberculosis/metadata.tsv +++ /dev/null @@ -1,141 +0,0 @@ -participant_label specimen_label disease CV_fold sample_name sample_tags Study Day Group cohort sc TCRseq bulk TCRseq fold -3094 3094_M6_TCRB Controller 2 3094_M6_TCRB "HLA-A*2402, HLA-A*7402, HLA-B*1502, HLA-B*3503, HLA-C*0401, HLA-C*0801, HLA-DPA1*0103, HLA-DPA1*0301, HLA-DPB1*0201, HLA-DPB1*10501, HLA-DQA1*0103, HLA-DQA1*0303, HLA-DQB1*0402, HLA-DQB1*0603, HLA-DRB1*0404, HLA-DRB1*1301, HLA-DRB3*0101, HLA-DRB4*0101, Tuberculosis" 180 Controller GC6 no yes 2 -2864 2864_M18_TCRB Progressor 2 2864_M18_TCRB Tuberculosis 540 Progressor GC6 no yes 2 -2864 2864_M6_TCRB Progressor 2 2864_M6_TCRB Tuberculosis 180 Progressor GC6 no yes 2 -463 463_BL_TCRB Controller 2 463_BL_TCRB "HLA-A*0201, HLA-A*3303, HLA-B*4001, HLA-B*4403, HLA-C*0304, HLA-C*0706, HLA-DPA1*0103, HLA-DPB1*1801, HLA-DQA1*0201, HLA-DQA1*1801, HLA-DQB1*0202, HLA-DQB1*0402, HLA-DRB1*0701, HLA-DRB1*0801, HLA-DRB4*0103, Tuberculosis" 0 Controller GC6 no yes 2 -921 921_BL_TCRB Progressor 1 921_BL_TCRB "HLA-A*0101, HLA-A*1101, HLA-B*3501, HLA-B*5701, HLA-C*0602, HLA-C*1801, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*1301, HLA-DPB1*1801, HLA-DQA1*0201, HLA-DQA1*0601, HLA-DQB1*0301, HLA-DQB1*0303, HLA-DRB1*0701, HLA-DRB1*0803, HLA-DRB4*0103N, Tuberculosis" 0 Progressor GC6 no yes 1 -495 495_M6_TCRB Controller 1 495_M6_TCRB "HLA-A*0211, HLA-A*2317, HLA-B*1503, HLA-B*4006, HLA-C*0210, HLA-C*1502, HLA-DPA1*0103, HLA-DPA1*0207, HLA-DPB1*1801, HLA-DQA1*0103, HLA-DQA1*0104, HLA-DQB1*0503, HLA-DQB1*0603, HLA-DRB1*1301, HLA-DRB1*1404, HLA-DRB3*0101, HLA-DRB3*0202, Tuberculosis" 180 Controller GC6 no yes 1 -184 184_M6_TCRB Progressor 0 184_M6_TCRB "HLA-A*0201, HLA-A*6827, HLA-B*4501, HLA-B*5802, HLA-C*0602, HLA-C*1601, HLA-DPA1*0103, HLA-DPA1*0301, HLA-DPB1*0301, HLA-DPB1*10501, HLA-DQA1*0103, HLA-DQA1*0303, HLA-DQB1*0402, HLA-DQB1*0603, HLA-DRB1*0404, HLA-DRB1*1301, HLA-DRB3*0101, HLA-DRB4*0101, Tuberculosis" 180 Progressor GC6 no yes 0 -3094 3094_M18_TCRB Controller 2 3094_M18_TCRB "HLA-A*2402, HLA-A*7402, HLA-B*1502, HLA-B*3503, HLA-C*0401, HLA-C*0801, HLA-DPA1*0103, HLA-DPA1*0301, HLA-DPB1*0201, HLA-DPB1*10501, HLA-DQA1*0103, HLA-DQA1*0303, HLA-DQB1*0402, HLA-DQB1*0603, HLA-DRB1*0404, HLA-DRB1*1301, HLA-DRB3*0101, HLA-DRB4*0101, Tuberculosis" 540 Controller GC6 no yes 2 -5662 5662_M6_TCRB Progressor 0 5662_M6_TCRB "HLA-A*2317, HLA-A*3303, HLA-B*4201, HLA-B*8202, HLA-C*0302, HLA-C*1701, HLA-DPA1*0201, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*1101, HLA-DQA1*0102, HLA-DQA1*1801, HLA-DQB1*0402, HLA-DQB1*0604, HLA-DRB1*0302, HLA-DRB1*1302, HLA-DRB3*0101, HLA-DRB3*0301, Tuberculosis" 180 Progressor GC6 no yes 0 -63 63_BL_TCRB Progressor 0 63_BL_TCRB "HLA-A*1101, HLA-A*2402, HLA-B*1502, HLA-B*4006, HLA-C*0102, HLA-C*0801, HLA-DPA1*0103, HLA-DPB1*0401, HLA-DPB1*0402, HLA-DQA1*0102, HLA-DQA1*0103, HLA-DQB1*0402, HLA-DQB1*0601, HLA-DRB1*1501, HLA-DRB1*1502, HLA-DRB5*0101, HLA-DRB5*0102, Tuberculosis" 0 Progressor GC6 no yes 0 -1445 1445_BL_TCRB Progressor 1 1445_BL_TCRB "HLA-A*0201, HLA-A*0301, HLA-B*1501, HLA-B*3801, HLA-C*0304, HLA-C*1203, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*1001, HLA-DPB1*1801, HLA-DQA1*0110, HLA-DQA1*0303, HLA-DQB1*0302, HLA-DQB1*0603, HLA-DRB1*0401, HLA-DRB1*1301, HLA-DRB3*0101, HLA-DRB4*0103, Tuberculosis" 0 Progressor GC6 no yes 1 -99 99_M6_TCRB Controller 1 99_M6_TCRB "HLA-A*0301, HLA-A*3303, HLA-B*1401, HLA-B*5802, HLA-C*0602, HLA-C*0802, HLA-DPA1*0301, HLA-DPB1*10501, HLA-DQA1*0303, HLA-DQA1*0505, HLA-DQB1*0202, HLA-DQB1*0301, HLA-DRB1*0701, HLA-DRB1*1102, HLA-DRB3*0202, HLA-DRB4*0101, Tuberculosis" 180 Controller GC6 no yes 1 -503 503_BL_TCRB Controller 0 503_BL_TCRB "HLA-A*0123, HLA-A*0201, HLA-B*4001, HLA-B*5802, HLA-C*0304, HLA-C*0602, HLA-DPA1*0103, HLA-DPA1*0202, HLA-DPB1*0301, HLA-DPB1*10501, HLA-DQA1*0102, HLA-DQA1*0303, HLA-DQB1*0402, HLA-DQB1*0604, HLA-DRB1*0404, HLA-DRB1*1302, HLA-DRB3*0301, HLA-DRB4*0101, Tuberculosis" 0 Controller GC6 no yes 0 -730 730_M6_TCRB Controller 1 730_M6_TCRB "HLA-A*2317, HLA-A*3004, HLA-B*1510, HLA-B*5101, HLA-C*0401, HLA-C*1601, HLA-DPA1*0202, HLA-DPA1*1801, HLA-DPB1*0101, HLA-DPB1*29601, HLA-DQA1*0102, HLA-DQB1*0601, HLA-DQB1*0602, HLA-DRB1*1501, HLA-DRB1*1503, HLA-DRB5*0101, Tuberculosis" 180 Controller GC6 no yes 1 -5918 5918_M6_TCRB Controller 0 5918_M6_TCRB "HLA-A*0301, HLA-A*2402, HLA-B*4001, HLA-B*4501, HLA-C*0482, HLA-C*1601, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*0101, HLA-DPB1*0201, HLA-DQA1*0102, HLA-DQA1*0601, HLA-DQB1*0301, HLA-DQB1*0602, HLA-DRB1*0405, HLA-DRB1*1503, HLA-DRB4*0103, HLA-DRB5*0101, Tuberculosis" 180 Controller GC6 no yes 0 -99 99_BL_TCRB Controller 1 99_BL_TCRB "HLA-A*0301, HLA-A*3303, HLA-B*1401, HLA-B*5802, HLA-C*0602, HLA-C*0802, HLA-DPA1*0301, HLA-DPB1*10501, HLA-DQA1*0303, HLA-DQA1*0505, HLA-DQB1*0202, HLA-DQB1*0301, HLA-DRB1*0701, HLA-DRB1*1102, HLA-DRB3*0202, HLA-DRB4*0101, Tuberculosis" 0 Controller GC6 no yes 1 -149 149_BL_TCRB Progressor 2 149_BL_TCRB "HLA-A*2417, HLA-A*4301, HLA-B*1502, HLA-B*4403, HLA-C*0210, HLA-C*0801, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*0402, HLA-DPB1*1101, HLA-DQA1*0102, HLA-DQA1*0601, HLA-DQB1*0301, HLA-DQB1*0602, HLA-DRB1*1202, HLA-DRB1*1501, HLA-DRB3*0301, Tuberculosis" 0 Progressor GC6 no yes 2 -6302 6302_M6_TCRB Controller 0 6302_M6_TCRB "HLA-A*3201, HLA-A*6601, HLA-B*0702, HLA-B*5802, HLA-C*0602, HLA-C*0702, HLA-DPA1*0202, HLA-DPA1*0301, HLA-DPB1*10501, HLA-DQA1*0303, HLA-DQB1*0202, HLA-DQB1*0402, HLA-DRB1*0404, HLA-DRB1*0701, HLA-DRB4*0101, HLA-DRB4*0103, Tuberculosis" 180 Controller GC6 no yes 0 -6675 6675_BL_TCRB Progressor 2 6675_BL_TCRB "HLA-A*0301, HLA-A*3001, HLA-B*1303, HLA-B*4201, HLA-C*0602, HLA-C*1701, HLA-DPA1*0201, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*3901, HLA-DQA1*0201, HLA-DQA1*1801, HLA-DQB1*0202, HLA-DQB1*0402, HLA-DRB1*0302, HLA-DRB1*0701, HLA-DRB3*0101, HLA-DRB4*0101, Tuberculosis" 0 Progressor GC6 no yes 2 -3106 3106_M18_TCRB Controller 2 3106_M18_TCRB "HLA-A*2402, HLA-A*3301, HLA-B*3503, HLA-B*7801, HLA-C*0401, HLA-C*1601, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*0201, HLA-DPB1*1701, HLA-DQA1*0103, HLA-DQA1*0303, HLA-DQB1*0202, HLA-DQB1*0603, HLA-DRB1*0901, HLA-DRB1*1301, HLA-DRB3*0101, HLA-DRB4*0101, Tuberculosis" 540 Controller GC6 no yes 2 -3106 3106_M6_TCRB Controller 2 3106_M6_TCRB "HLA-A*2402, HLA-A*3301, HLA-B*3503, HLA-B*7801, HLA-C*0401, HLA-C*1601, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*0201, HLA-DPB1*1701, HLA-DQA1*0103, HLA-DQA1*0303, HLA-DQB1*0202, HLA-DQB1*0603, HLA-DRB1*0901, HLA-DRB1*1301, HLA-DRB3*0101, HLA-DRB4*0101, Tuberculosis" 180 Controller GC6 no yes 2 -2 2_M6_TCRB Progressor 2 2_M6_TCRB "HLA-A*0301, HLA-A*6827, HLA-B*0702, HLA-B*4101, HLA-C*0718, HLA-C*1737, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*1801, HLA-DQA1*0303, HLA-DQB1*0202, HLA-DQB1*0302, HLA-DRB1*0401, HLA-DRB1*1101, HLA-DRB3*0202, HLA-DRB4*0101, Tuberculosis" 180 Progressor GC6 no yes 2 -6665 6665_M6_TCRB Progressor 1 6665_M6_TCRB "HLA-A*2901, HLA-A*3601, HLA-B*1801, HLA-B*5301, HLA-C*0401, HLA-C*0704, HLA-DPA1*0103, HLA-DPB1*0201, HLA-DPB1*5101, HLA-DQA1*0102, HLA-DQB1*0602, HLA-DQB1*0609, HLA-DRB1*1101, HLA-DRB1*1302, HLA-DRB3*0202, HLA-DRB3*0301, Tuberculosis" 180 Progressor GC6 no yes 1 -161 161_BL_TCRB Controller 0 161_BL_TCRB "HLA-A*2317, HLA-B*0702, HLA-B*8202, HLA-C*0302, HLA-C*0702, HLA-DPA1*0103, HLA-DPA1*0207, HLA-DPB1*0101, HLA-DPB1*1801, HLA-DQA1*0303, HLA-DQA1*0505, HLA-DRB1*0404, HLA-DRB1*1114, HLA-DRB3*0202, HLA-DRB4*0101, Tuberculosis" 0 Controller GC6 no yes 0 -3102 3102_BL_TCRB Progressor 0 3102_BL_TCRB "HLA-A*2902, HLA-A*3301, HLA-B*1510, HLA-B*4201, HLA-C*1601, HLA-C*1701, HLA-DPA1*0201, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*1301, HLA-DQA1*0502, HLA-DQA1*1801, HLA-DQB1*0319, HLA-DQB1*0402, HLA-DRB1*0302, HLA-DRB1*1101, HLA-DRB3*0101, HLA-DRB3*0202, Tuberculosis" 0 Progressor GC6 no yes 0 -495 495_BL_TCRB Controller 1 495_BL_TCRB "HLA-A*0211, HLA-A*2317, HLA-B*1503, HLA-B*4006, HLA-C*0210, HLA-C*1502, HLA-DPA1*0103, HLA-DPA1*0207, HLA-DPB1*1801, HLA-DQA1*0103, HLA-DQA1*0104, HLA-DQB1*0503, HLA-DQB1*0603, HLA-DRB1*1301, HLA-DRB1*1404, HLA-DRB3*0101, HLA-DRB3*0202, Tuberculosis" 0 Controller GC6 no yes 1 -6675 6675_M6_TCRB Progressor 2 6675_M6_TCRB "HLA-A*0301, HLA-A*3001, HLA-B*1303, HLA-B*4201, HLA-C*0602, HLA-C*1701, HLA-DPA1*0201, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*3901, HLA-DQA1*0201, HLA-DQA1*1801, HLA-DQB1*0202, HLA-DQB1*0402, HLA-DRB1*0302, HLA-DRB1*0701, HLA-DRB3*0101, HLA-DRB4*0101, Tuberculosis" 180 Progressor GC6 no yes 2 -124 124_BL_TCRB Controller 1 124_BL_TCRB "HLA-A*0202, HLA-A*31106, HLA-B*4701, HLA-B*5801, HLA-C*0602, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*0201, HLA-DPB1*55801, HLA-DQA1*0103, HLA-DQA1*0501, HLA-DQB1*0201, HLA-DQB1*0603, HLA-DRB1*0301, HLA-DRB1*1301, HLA-DRB3*0101, HLA-DRB3*0202, Tuberculosis" 0 Controller GC6 no yes 1 -2102 2102_M18_TCRB Controller 1 2102_M18_TCRB "HLA-A*2501, HLA-A*3402, HLA-B*1801, HLA-B*4403, HLA-C*0401, HLA-C*1203, HLA-DQA1*0102, HLA-DQA1*0401, HLA-DQB1*0402, HLA-DQB1*0602, HLA-DRB1*0801, HLA-DRB1*1503, HLA-DRB5*0101, Tuberculosis" 540 Controller GC6 no yes 1 -3094 3094_BL_TCRB Controller 2 3094_BL_TCRB "HLA-A*2402, HLA-A*7402, HLA-B*1502, HLA-B*3503, HLA-C*0401, HLA-C*0801, HLA-DPA1*0103, HLA-DPA1*0301, HLA-DPB1*0201, HLA-DPB1*10501, HLA-DQA1*0103, HLA-DQA1*0303, HLA-DQB1*0402, HLA-DQB1*0603, HLA-DRB1*0404, HLA-DRB1*1301, HLA-DRB3*0101, HLA-DRB4*0101, Tuberculosis" 0 Controller GC6 no yes 2 -1445 1445_M6_TCRB Progressor 1 1445_M6_TCRB "HLA-A*0201, HLA-A*0301, HLA-B*1501, HLA-B*3801, HLA-C*0304, HLA-C*1203, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*1001, HLA-DPB1*1801, HLA-DQA1*0110, HLA-DQA1*0303, HLA-DQB1*0302, HLA-DQB1*0603, HLA-DRB1*0401, HLA-DRB1*1301, HLA-DRB3*0101, HLA-DRB4*0103, Tuberculosis" 180 Progressor GC6 no yes 1 -353 353_M6_TCRB Controller 0 353_M6_TCRB "HLA-A*0201, HLA-A*2301, HLA-B*0702, HLA-B*5101, HLA-C*0702, HLA-C*1601, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*0101, HLA-DPB1*1801, HLA-DQA1*0102, HLA-DQA1*0201, HLA-DQB1*0202, HLA-DQB1*0602, HLA-DRB1*0701, HLA-DRB1*1501, HLA-DRB4*0103, HLA-DRB5*0101, Tuberculosis" 180 Controller GC6 no yes 0 -161 161_M6_TCRB Controller 0 161_M6_TCRB "HLA-A*2317, HLA-B*0702, HLA-B*8202, HLA-C*0302, HLA-C*0702, HLA-DPA1*0103, HLA-DPA1*0207, HLA-DPB1*0101, HLA-DPB1*1801, HLA-DQA1*0303, HLA-DQA1*0505, HLA-DRB1*0404, HLA-DRB1*1114, HLA-DRB3*0202, HLA-DRB4*0101, Tuberculosis" 180 Controller GC6 no yes 0 -6665 6665_BL_TCRB Progressor 1 6665_BL_TCRB "HLA-A*2901, HLA-A*3601, HLA-B*1801, HLA-B*5301, HLA-C*0401, HLA-C*0704, HLA-DPA1*0103, HLA-DPB1*0201, HLA-DPB1*5101, HLA-DQA1*0102, HLA-DQB1*0602, HLA-DQB1*0609, HLA-DRB1*1101, HLA-DRB1*1302, HLA-DRB3*0202, HLA-DRB3*0301, Tuberculosis" 0 Progressor GC6 no yes 1 -5357 5357_BL_TCRB Controller 2 5357_BL_TCRB "HLA-A*0201, HLA-A*3601, HLA-B*4001, HLA-B*4403, HLA-C*0304, HLA-C*0401, HLA-DPA1*0201, HLA-DPA1*0301, HLA-DPB1*1001, HLA-DPB1*10501, HLA-DQA1*0102, HLA-DQB1*0602, HLA-DQB1*0604, HLA-DRB1*1302, HLA-DRB1*1503, HLA-DRB3*0301, HLA-DRB5*0101, Tuberculosis" 0 Controller GC6 no yes 2 -6675 6675_M18_TCRB Progressor 2 6675_M18_TCRB "HLA-A*0301, HLA-A*3001, HLA-B*1303, HLA-B*4201, HLA-C*0602, HLA-C*1701, HLA-DPA1*0201, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*3901, HLA-DQA1*0201, HLA-DQA1*1801, HLA-DQB1*0202, HLA-DQB1*0402, HLA-DRB1*0302, HLA-DRB1*0701, HLA-DRB3*0101, HLA-DRB4*0101, Tuberculosis" 540 Progressor GC6 no yes 2 -503 503_M6_TCRB Controller 0 503_M6_TCRB "HLA-A*0123, HLA-A*0201, HLA-B*4001, HLA-B*5802, HLA-C*0304, HLA-C*0602, HLA-DPA1*0103, HLA-DPA1*0202, HLA-DPB1*0301, HLA-DPB1*10501, HLA-DQA1*0102, HLA-DQA1*0303, HLA-DQB1*0402, HLA-DQB1*0604, HLA-DRB1*0404, HLA-DRB1*1302, HLA-DRB3*0301, HLA-DRB4*0101, Tuberculosis" 180 Controller GC6 no yes 0 -165 165_BL_TCRB Progressor 1 165_BL_TCRB "HLA-A*2601, HLA-A*4301, HLA-B*0801, HLA-B*3501, HLA-C*0210, HLA-C*0401, HLA-DPA1*0103, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*1801, HLA-DQA1*0303, HLA-DQA1*0501, HLA-DQB1*0201, HLA-DQB1*0302, HLA-DRB1*0301, HLA-DRB1*1801, HLA-DRB3*0101, HLA-DRB4*0101, Tuberculosis" 0 Progressor GC6 no yes 1 -2102 2102_M6_TCRB Controller 1 2102_M6_TCRB "HLA-A*2501, HLA-A*3402, HLA-B*1801, HLA-B*4403, HLA-C*0401, HLA-C*1203, HLA-DQA1*0102, HLA-DQA1*0401, HLA-DQB1*0402, HLA-DQB1*0602, HLA-DRB1*0801, HLA-DRB1*1503, HLA-DRB5*0101, Tuberculosis" 180 Controller GC6 no yes 1 -2228 2228_BL_TCRB Controller 2 2228_BL_TCRB "HLA-A*2901, HLA-A*3001, HLA-B*1801, HLA-B*4403, HLA-C*0401, HLA-C*0704, HLA-DPA1*0103, HLA-DPA1*0301, HLA-DPB1*10401, HLA-DPB1*10501, HLA-DQA1*0102, HLA-DQA1*0103, HLA-DQB1*0603, HLA-DQB1*0609, HLA-DRB1*1301, HLA-DRB1*1302, HLA-DRB3*0101, HLA-DRB3*0301, Tuberculosis" 0 Controller GC6 no yes 2 -5662 5662_BL_TCRB Progressor 0 5662_BL_TCRB "HLA-A*2317, HLA-A*3303, HLA-B*4201, HLA-B*8202, HLA-C*0302, HLA-C*1701, HLA-DPA1*0201, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*1101, HLA-DQA1*0102, HLA-DQA1*1801, HLA-DQB1*0402, HLA-DQB1*0604, HLA-DRB1*0302, HLA-DRB1*1302, HLA-DRB3*0101, HLA-DRB3*0301, Tuberculosis" 0 Progressor GC6 no yes 0 -15 15_BL_TCRB Controller 1 15_BL_TCRB "HLA-A*0201, HLA-A*3001, HLA-B*0801, HLA-B*4403, HLA-C*1601, HLA-C*1701, HLA-DPA1*0103, HLA-DPA1*0301, HLA-DPB1*10501, HLA-DPB1*1801, HLA-DQA1*0101, HLA-DQA1*1801, HLA-DQB1*0402, HLA-DQB1*0501, HLA-DRB1*0101, HLA-DRB1*0302, HLA-DRB3*0101, Tuberculosis" 0 Controller GC6 no yes 1 -921 921_M6_TCRB Progressor 1 921_M6_TCRB "HLA-A*0101, HLA-A*1101, HLA-B*3501, HLA-B*5701, HLA-C*0602, HLA-C*1801, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*1301, HLA-DPB1*1801, HLA-DQA1*0201, HLA-DQA1*0601, HLA-DQB1*0301, HLA-DQB1*0303, HLA-DRB1*0701, HLA-DRB1*0803, HLA-DRB4*0103N, Tuberculosis" 180 Progressor GC6 no yes 1 -1114 1114_BL_TCRB Controller 0 1114_BL_TCRB "HLA-A*0202, HLA-A*2601, HLA-B*4101, HLA-B*5703, HLA-C*0701, HLA-C*1737, HLA-DPA1*0103, HLA-DPB1*0201, HLA-DPB1*0301, HLA-DQA1*0101, HLA-DQA1*0102, HLA-DQB1*0501, HLA-DQB1*0602, HLA-DRB1*0102, HLA-DRB1*1501, Tuberculosis" 0 Controller GC6 no yes 0 -353 353_BL_TCRB Controller 0 353_BL_TCRB "HLA-A*0201, HLA-A*2301, HLA-B*0702, HLA-B*5101, HLA-C*0702, HLA-C*1601, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*0101, HLA-DPB1*1801, HLA-DQA1*0102, HLA-DQA1*0201, HLA-DQB1*0202, HLA-DQB1*0602, HLA-DRB1*0701, HLA-DRB1*1501, HLA-DRB4*0103, HLA-DRB5*0101, Tuberculosis" 0 Controller GC6 no yes 0 -124 124_M6_TCRB Controller 1 124_M6_TCRB "HLA-A*0202, HLA-A*31106, HLA-B*4701, HLA-B*5801, HLA-C*0602, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*0201, HLA-DPB1*55801, HLA-DQA1*0103, HLA-DQA1*0501, HLA-DQB1*0201, HLA-DQB1*0603, HLA-DRB1*0301, HLA-DRB1*1301, HLA-DRB3*0101, HLA-DRB3*0202, Tuberculosis" 180 Controller GC6 no yes 1 -1114 1114_M6_TCRB Controller 0 1114_M6_TCRB "HLA-A*0202, HLA-A*2601, HLA-B*4101, HLA-B*5703, HLA-C*0701, HLA-C*1737, HLA-DPA1*0103, HLA-DPB1*0201, HLA-DPB1*0301, HLA-DQA1*0101, HLA-DQA1*0102, HLA-DQB1*0501, HLA-DQB1*0602, HLA-DRB1*0102, HLA-DRB1*1501, Tuberculosis" 180 Controller GC6 no yes 0 -1239 1239_M6_TCRB Controller 2 1239_M6_TCRB "HLA-A*0201, HLA-A*2317, HLA-B*0702, HLA-B*2702, HLA-C*0202, HLA-C*0401, HLA-DPA1*0103, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*1801, HLA-DQA1*0102, HLA-DQA1*0505, HLA-DQB1*0301, HLA-DQB1*0502, HLA-DRB1*0301, HLA-DRB1*1601, HLA-DRB3*0202, HLA-DRB5*0202, Tuberculosis" 180 Controller GC6 no yes 2 -2077 2077_BL_TCRB Controller 1 2077_BL_TCRB "HLA-A*0201, HLA-A*3001, HLA-B*1503, HLA-B*4901, HLA-C*0210, HLA-C*0701, HLA-DPA1*0201, HLA-DPA1*0402, HLA-DPB1*10501, HLA-DPB1*1301, HLA-DQA1*0401, HLA-DQA1*0505, HLA-DQB1*0319, HLA-DRB1*0804, HLA-DRB1*1101, HLA-DRB3*0202, Tuberculosis" 0 Controller GC6 no yes 1 -940 940_M6_TCRB Controller 2 940_M6_TCRB "HLA-A*3201, HLA-A*4301, HLA-B*1501, HLA-B*4023, HLA-C*0303, HLA-C*0304, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*1301, HLA-DPB1*1801, HLA-DQA1*0102, HLA-DQA1*0104, HLA-DQB1*0501, HLA-DQB1*0603, HLA-DRB1*1202, HLA-DRB1*1454, HLA-DRB3*0301, HLA-DRB5*0101, Tuberculosis" 180 Controller GC6 no yes 2 -5357 5357_M18_TCRB Controller 2 5357_M18_TCRB "HLA-A*0201, HLA-A*3601, HLA-B*4001, HLA-B*4403, HLA-C*0304, HLA-C*0401, HLA-DPA1*0201, HLA-DPA1*0301, HLA-DPB1*1001, HLA-DPB1*10501, HLA-DQA1*0102, HLA-DQB1*0602, HLA-DQB1*0604, HLA-DRB1*1302, HLA-DRB1*1503, HLA-DRB3*0301, HLA-DRB5*0101, Tuberculosis" 540 Controller GC6 no yes 2 -1075 1075_BL_TCRB Controller 0 1075_BL_TCRB "HLA-A*0205, HLA-A*4301, HLA-B*4403, HLA-B*5801, HLA-C*0718, HLA-DPA1*0201, HLA-DPA1*0301, HLA-DPB1*0301, HLA-DPB1*1301, HLA-DQA1*0102, HLA-DQA1*0505, HLA-DQB1*0319, HLA-DQB1*0609, HLA-DRB1*1102, HLA-DRB1*1302, HLA-DRB3*0301, Tuberculosis" 0 Controller GC6 no yes 0 -1239 1239_BL_TCRB Controller 2 1239_BL_TCRB "HLA-A*0201, HLA-A*2317, HLA-B*0702, HLA-B*2702, HLA-C*0202, HLA-C*0401, HLA-DPA1*0103, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*1801, HLA-DQA1*0102, HLA-DQA1*0505, HLA-DQB1*0301, HLA-DQB1*0502, HLA-DRB1*0301, HLA-DRB1*1601, HLA-DRB3*0202, HLA-DRB5*0202, Tuberculosis" 0 Controller GC6 no yes 2 -647 647_BL_TCRB Controller 2 647_BL_TCRB "HLA-A*2402, HLA-A*6601, HLA-B*0801, HLA-B*5802, HLA-C*0602, HLA-C*0702, HLA-DPA1*0201, HLA-DPA1*0209, HLA-DPB1*10601, HLA-DPB1*5501, HLA-DQA1*0103, HLA-DQB1*0602, HLA-DQB1*0603, HLA-DRB1*1301, HLA-DRB3*0101, HLA-DRB3*0202, Tuberculosis" 0 Controller GC6 no yes 2 -184 184_BL_TCRB Progressor 0 184_BL_TCRB "HLA-A*0201, HLA-A*6827, HLA-B*4501, HLA-B*5802, HLA-C*0602, HLA-C*1601, HLA-DPA1*0103, HLA-DPA1*0301, HLA-DPB1*0301, HLA-DPB1*10501, HLA-DQA1*0103, HLA-DQA1*0303, HLA-DQB1*0402, HLA-DQB1*0603, HLA-DRB1*0404, HLA-DRB1*1301, HLA-DRB3*0101, HLA-DRB4*0101, Tuberculosis" 0 Progressor GC6 no yes 0 -2 2_BL_TCRB Progressor 2 2_BL_TCRB "HLA-A*0301, HLA-A*6827, HLA-B*0702, HLA-B*4101, HLA-C*0718, HLA-C*1737, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*1801, HLA-DQA1*0303, HLA-DQB1*0202, HLA-DQB1*0302, HLA-DRB1*0401, HLA-DRB1*1101, HLA-DRB3*0202, HLA-DRB4*0101, Tuberculosis" 0 Progressor GC6 no yes 2 -463 463_M6_TCRB Controller 2 463_M6_TCRB "HLA-A*0201, HLA-A*3303, HLA-B*4001, HLA-B*4403, HLA-C*0304, HLA-C*0706, HLA-DPA1*0103, HLA-DPB1*1801, HLA-DQA1*0201, HLA-DQA1*1801, HLA-DQB1*0202, HLA-DQB1*0402, HLA-DRB1*0701, HLA-DRB1*0801, HLA-DRB4*0103, Tuberculosis" 180 Controller GC6 no yes 2 -2097 2097_M18_TCRB Controller 1 2097_M18_TCRB "HLA-A*0101, HLA-A*1101, HLA-B*5106, HLA-B*5701, HLA-C*0602, HLA-C*1402, HLA-DPA1*0201, HLA-DPB1*1301, HLA-DPB1*1401, HLA-DQA1*0102, HLA-DQA1*0201, HLA-DQB1*0303, HLA-DQB1*0601, HLA-DRB1*0701, HLA-DRB1*1501, HLA-DRB4*0103N, HLA-DRB5*0101, Tuberculosis" 540 Controller GC6 no yes 1 -5918 5918_BL_TCRB Controller 0 5918_BL_TCRB "HLA-A*0301, HLA-A*2402, HLA-B*4001, HLA-B*4501, HLA-C*0482, HLA-C*1601, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*0101, HLA-DPB1*0201, HLA-DQA1*0102, HLA-DQA1*0601, HLA-DQB1*0301, HLA-DQB1*0602, HLA-DRB1*0405, HLA-DRB1*1503, HLA-DRB4*0103, HLA-DRB5*0101, Tuberculosis" 0 Controller GC6 no yes 0 -46 46_BL_TCRB Controller 0 46_BL_TCRB "HLA-A*1101, HLA-A*2501, HLA-B*0706, HLA-B*1801, HLA-C*0702, HLA-C*1203, HLA-DPA1*0103, HLA-DPA1*0301, HLA-DPB1*10501, HLA-DPB1*1801, HLA-DQA1*0501, HLA-DQA1*1801, HLA-DQB1*0201, HLA-DQB1*0402, HLA-DRB1*0301, HLA-DRB1*0801, HLA-DRB3*0101, Tuberculosis" 0 Controller GC6 no yes 0 -5662 5662_M18_TCRB Progressor 0 5662_M18_TCRB "HLA-A*2317, HLA-A*3303, HLA-B*4201, HLA-B*8202, HLA-C*0302, HLA-C*1701, HLA-DPA1*0201, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*1101, HLA-DQA1*0102, HLA-DQA1*1801, HLA-DQB1*0402, HLA-DQB1*0604, HLA-DRB1*0302, HLA-DRB1*1302, HLA-DRB3*0101, HLA-DRB3*0301, Tuberculosis" 540 Progressor GC6 no yes 0 -650 650_BL_TCRB Progressor 0 650_BL_TCRB "HLA-A*3002, HLA-B*4501, HLA-B*5801, HLA-C*0718, HLA-C*1601, HLA-DPA1*0201, HLA-DPB1*1301, HLA-DPB1*1701, HLA-DQA1*0101, HLA-DQA1*0303, HLA-DQB1*0302, HLA-DQB1*0501, HLA-DRB1*0102, HLA-DRB1*0405, HLA-DRB4*0103, Tuberculosis" 0 Progressor GC6 no yes 0 -63 63_M6_TCRB Progressor 0 63_M6_TCRB "HLA-A*1101, HLA-A*2402, HLA-B*1502, HLA-B*4006, HLA-C*0102, HLA-C*0801, HLA-DPA1*0103, HLA-DPB1*0401, HLA-DPB1*0402, HLA-DQA1*0102, HLA-DQA1*0103, HLA-DQB1*0402, HLA-DQB1*0601, HLA-DRB1*1501, HLA-DRB1*1502, HLA-DRB5*0101, HLA-DRB5*0102, Tuberculosis" 180 Progressor GC6 no yes 0 -6302 6302_BL_TCRB Controller 0 6302_BL_TCRB "HLA-A*3201, HLA-A*6601, HLA-B*0702, HLA-B*5802, HLA-C*0602, HLA-C*0702, HLA-DPA1*0202, HLA-DPA1*0301, HLA-DPB1*10501, HLA-DQA1*0303, HLA-DQB1*0202, HLA-DQB1*0402, HLA-DRB1*0404, HLA-DRB1*0701, HLA-DRB4*0101, HLA-DRB4*0103, Tuberculosis" 0 Controller GC6 no yes 0 -198 198_BL_TCRB Controller 2 198_BL_TCRB "HLA-A*4301, HLA-B*0801, HLA-B*1501, HLA-C*0210, HLA-C*0401, HLA-DPA1*0202, HLA-DPA1*0207, HLA-DPB1*0101, HLA-DQA1*0303, HLA-DQA1*0505, HLA-DQB1*0301, HLA-DQB1*0302, HLA-DRB1*0301, HLA-DRB1*0401, HLA-DRB3*0202, HLA-DRB4*0101, Tuberculosis" 0 Controller GC6 no yes 2 -2097 2097_M6_TCRB Controller 1 2097_M6_TCRB "HLA-A*0101, HLA-A*1101, HLA-B*5106, HLA-B*5701, HLA-C*0602, HLA-C*1402, HLA-DPA1*0201, HLA-DPB1*1301, HLA-DPB1*1401, HLA-DQA1*0102, HLA-DQA1*0201, HLA-DQB1*0303, HLA-DQB1*0601, HLA-DRB1*0701, HLA-DRB1*1501, HLA-DRB4*0103N, HLA-DRB5*0101, Tuberculosis" 180 Controller GC6 no yes 1 -04-0859 04-0859_D180_TCRB Progressor 2 04-0859_D180_TCRB "12-18 Years (Adolescence), 16 Years, Female, HLA-A*3002, HLA-B*1524, HLA-B*4501, HLA-C*0303, HLA-C*1601, HLA-DPA1*0103, HLA-DPB1*0301, HLA-DPB1*0401, HLA-DQA1*0101, HLA-DQA1*0505, HLA-DQB1*0501, HLA-DRB1*0102, HLA-DRB1*1201, HLA-DRB3*0202, Tuberculosis" 180 Progressor ACS no yes 2 -04-0333 04-0333_D0_TCRB Controller 0 04-0333_D0_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*3101, HLA-A*6801, HLA-B*1401, HLA-B*5802, HLA-C*0602, HLA-C*0804, HLA-DQA1*0102, HLA-DQB1*0501, HLA-DQB1*0603, HLA-DRB1*1201, HLA-DRB1*1301, Tuberculosis" 0 Controller ACS yes yes 0 -04-0699 04-0699_D0_TCRB Controller 1 04-0699_D0_TCRB "12-18 Years (Adolescence), 14 Years, Female, HLA-A*0205, HLA-A*1101, HLA-B*0801, HLA-B*4701, HLA-C*0602, HLA-C*0702, HLA-DPA1*0103, HLA-DPB1*0201, HLA-DPB1*0301, HLA-DQA1*0101, HLA-DQA1*0501, HLA-DQB1*0601, HLA-DRB1*0301, HLA-DRB1*1501, HLA-DRB3*0202, HLA-DRB5*0101, Tuberculosis" 0 Controller ACS yes yes 1 -04-0843 04-0843_D540_TCRB Controller 1 04-0843_D540_TCRB "12-18 Years (Adolescence), 15 Years, HLA-A*0205, HLA-A*0211, HLA-B*4402, HLA-B*5801, HLA-C*0602, HLA-C*1502, HLA-DPA1*0103, HLA-DPA1*0301, HLA-DPB1*0401, HLA-DPB1*0402, HLA-DQA1*0102, HLA-DQB1*0503, HLA-DQB1*0602, HLA-DRB1*1404, HLA-DRB1*1503, HLA-DRB3*0202, HLA-DRB5*0101, Male, Tuberculosis" 540 Controller ACS no yes 1 -09-0789 09-0789_D0_TCRB Progressor 0 09-0789_D0_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*0202, HLA-A*2301, HLA-B*1510, HLA-B*4201, HLA-C*0304, HLA-C*1701, HLA-DPA1*0202, HLA-DPB1*10501, HLA-DPB1*1801, HLA-DQA1*0102, HLA-DQA1*0401, HLA-DQB1*0602, HLA-DRB1*0302, HLA-DRB1*1503, HLA-DRB3*0101, HLA-DRB5*0101, Tuberculosis" 0 Progressor ACS yes yes 0 -07-0386 07-0386_D0_TCRB Progressor 0 07-0386_D0_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*2301, HLA-A*4301, HLA-B*1501, HLA-B*1510, HLA-C*0401, HLA-C*1601, HLA-DPA1*0201, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*1301, HLA-DQA1*0102, HLA-DQA1*0505, HLA-DQB1*0301, HLA-DQB1*0602, HLA-DRB1*1101, HLA-DRB1*1501, HLA-DRB3*0202, Tuberculosis" 0 Progressor ACS yes yes 0 -04-0843 04-0843_D360_TCRB Controller 1 04-0843_D360_TCRB "12-18 Years (Adolescence), 15 Years, HLA-A*0205, HLA-A*0211, HLA-B*4402, HLA-B*5801, HLA-C*0602, HLA-C*1502, HLA-DPA1*0103, HLA-DPA1*0301, HLA-DPB1*0401, HLA-DPB1*0402, HLA-DQA1*0102, HLA-DQB1*0503, HLA-DQB1*0602, HLA-DRB1*1404, HLA-DRB1*1503, HLA-DRB3*0202, HLA-DRB5*0101, Male, Tuberculosis" 360 Controller ACS yes yes 1 -07-0202 07-0202-D180_TCRB Controller 0 07-0202-D180_TCRB "12-18 Years (Adolescence), 16 Years, Female, HLA-A*0205, HLA-B*1517, HLA-C*0304, HLA-C*0701, HLA-DQA1*0102, HLA-DQB1*0608, HLA-DRB1*1302, HLA-DRB1*1503, Tuberculosis" 180 Controller ACS yes yes 0 -04-1104 04-1104-D180_TCRB Controller 0 04-1104-D180_TCRB "12-18 Years (Adolescence), 17 Years, HLA-A*2601, HLA-A*3002, HLA-B*1302, HLA-B*4101, HLA-C*1601, HLA-C*1701, HLA-DQA1*0501, HLA-DQB1*0301, HLA-DRB1*1102, Male, Tuberculosis" 180 Controller ACS yes yes 0 -04-0910 04-0910_D540_TCRB Progressor 1 04-0910_D540_TCRB "12-18 Years (Adolescence), 13 Years, Female, HLA-A*4301, HLA-A*6801, HLA-B*1503, HLA-B*4006, HLA-C*1502, HLA-C*1801, HLA-DPA1*0104, HLA-DPA1*0301, HLA-DPB1*10501, HLA-DPB1*1501, HLA-DQA1*0102, HLA-DQA1*0103, HLA-DQB1*0601, HLA-DQB1*0602, HLA-DRB1*1501, HLA-DRB1*1503, HLA-DRB5*0101, Tuberculosis" 540 Progressor ACS yes yes 1 -07-0386 07-0386_D540_TCRB Progressor 0 07-0386_D540_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*2301, HLA-A*4301, HLA-B*1501, HLA-B*1510, HLA-C*0401, HLA-C*1601, HLA-DPA1*0201, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*1301, HLA-DQA1*0102, HLA-DQA1*0505, HLA-DQB1*0301, HLA-DQB1*0602, HLA-DRB1*1101, HLA-DRB1*1501, HLA-DRB3*0202, Tuberculosis" 540 Progressor ACS yes yes 0 -09-0507 09-0507_D0_TCRB Progressor 2 09-0507_D0_TCRB "12-18 Years (Adolescence), 16 Years, HLA-A*0101, HLA-A*6601, HLA-B*5801, HLA-B*8101, HLA-C*0602, HLA-C*1801, HLA-DPA1*0301, HLA-DPA1*0401, HLA-DPB1*0401, HLA-DPB1*0402, HLA-DQA1*0201, HLA-DQA1*0501, HLA-DQB1*0201, HLA-DQB1*0202, HLA-DRB1*0301, HLA-DRB1*0701, HLA-DRB3*0202, HLA-DRB4*0101, Male, Tuberculosis" 0 Progressor ACS yes yes 2 -07-1003 07-1003_D540_TCRB Progressor 0 07-1003_D540_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*2902, HLA-A*6801, HLA-B*1501, HLA-B*4201, HLA-C*0401, HLA-C*1701, HLA-DPA1*0201, HLA-DPA1*0301, HLA-DPB1*0901, HLA-DPB1*10501, HLA-DQA1*0103, HLA-DQA1*0401, HLA-DQB1*0402, HLA-DQB1*0601, HLA-DRB1*0302, HLA-DRB1*1502, HLA-DRB3*0101, HLA-DRB5*0101, Tuberculosis" 540 Progressor ACS no yes 0 -07-0119 07-0119_D0_TCRB Controller 2 07-0119_D0_TCRB "12-18 Years (Adolescence), 17 Years, HLA-A*1101, HLA-A*3001, HLA-B*3501, HLA-B*5801, HLA-C*0401, HLA-C*0602, HLA-DQA1*0101, HLA-DQA1*0302, HLA-DQB1*0302, HLA-DQB1*0501, HLA-DRB1*0101, HLA-DRB1*0401, Male, Tuberculosis" 0 Controller ACS yes yes 2 -07-1153 07-1153_D180_TCRB Progressor 0 07-1153_D180_TCRB "12-18 Years (Adolescence), 14 Years, Female, HLA-A*6802, HLA-A*7402, HLA-B*1503, HLA-B*5802, HLA-C*0210, HLA-C*0602, HLA-DPA1*0202, HLA-DPA1*0301, HLA-DPB1*0101, HLA-DPB1*10501, HLA-DQA1*0303, HLA-DQA1*0401, HLA-DQB1*0402, HLA-DRB1*0302, HLA-DRB1*0404, HLA-DRB3*0101, HLA-DRB4*0101, Tuberculosis" 180 Progressor ACS yes yes 0 -04-0699 04-0699_D180_TCRB Controller 1 04-0699_D180_TCRB "12-18 Years (Adolescence), 14 Years, Female, HLA-A*0205, HLA-A*1101, HLA-B*0801, HLA-B*4701, HLA-C*0602, HLA-C*0702, HLA-DPA1*0103, HLA-DPB1*0201, HLA-DPB1*0301, HLA-DQA1*0101, HLA-DQA1*0501, HLA-DQB1*0601, HLA-DRB1*0301, HLA-DRB1*1501, HLA-DRB3*0202, HLA-DRB5*0101, Tuberculosis" 180 Controller ACS yes yes 1 -04-0695 04-0695_D0_TCRB Progressor 1 04-0695_D0_TCRB "12-18 Years (Adolescence), 14 Years, HLA-A*2902, HLA-A*4301, HLA-B*1510, HLA-B*4403, HLA-C*0401, HLA-C*0701, HLA-DPA1*0103, HLA-DPA1*0202, HLA-DPB1*0201, HLA-DPB1*0402, HLA-DQA1*0102, HLA-DQA1*0303, HLA-DQB1*0302, HLA-DQB1*0602, HLA-DRB1*0401, HLA-DRB1*1101, HLA-DRB3*0202, HLA-DRB4*0101, Male, Tuberculosis" 0 Progressor ACS yes yes 1 -07-1003 07-1003_D0_TCRB Progressor 0 07-1003_D0_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*2902, HLA-A*6801, HLA-B*1501, HLA-B*4201, HLA-C*0401, HLA-C*1701, HLA-DPA1*0201, HLA-DPA1*0301, HLA-DPB1*0901, HLA-DPB1*10501, HLA-DQA1*0103, HLA-DQA1*0401, HLA-DQB1*0402, HLA-DQB1*0601, HLA-DRB1*0302, HLA-DRB1*1502, HLA-DRB3*0101, HLA-DRB5*0101, Tuberculosis" 0 Progressor ACS yes yes 0 -07-0060 07-0060_D360_TCRB Progressor 2 07-0060_D360_TCRB "12-18 Years (Adolescence), 18 Years, Female, HLA-A*0301, HLA-B*0702, HLA-B*5802, HLA-C*0602, HLA-C*0702, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*0101, HLA-DPB1*0402, HLA-DQA1*0102, HLA-DQA1*0505, HLA-DQB1*0319, HLA-DQB1*0602, HLA-DRB1*0301, HLA-DRB3*0202, HLA-DRB5*0101, Tuberculosis" 360 Progressor ACS yes yes 2 -07-0630 07-0630-D0_TCRB Progressor 1 07-0630-D0_TCRB "12-18 Years (Adolescence), 16 Years, Female, HLA-A*2310, HLA-A*2901, HLA-B*1502, HLA-B*5801, HLA-C*0401, HLA-C*0602, HLA-DPA1*0201, HLA-DPA1*0301, HLA-DPB1*1101, HLA-DPB1*1701, HLA-DQA1*0201, HLA-DQA1*0501, HLA-DQB1*0602, HLA-DQB1*0609, HLA-DRB1*1306, HLA-DRB1*1501, HLA-DRB3*0101, Tuberculosis" 0 Progressor ACS yes yes 1 -07-0060 07-0060_D180_TCRB Progressor 2 07-0060_D180_TCRB "12-18 Years (Adolescence), 18 Years, Female, HLA-A*0301, HLA-B*0702, HLA-B*5802, HLA-C*0602, HLA-C*0702, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*0101, HLA-DPB1*0402, HLA-DQA1*0102, HLA-DQA1*0505, HLA-DQB1*0319, HLA-DQB1*0602, HLA-DRB1*0301, HLA-DRB3*0202, HLA-DRB5*0101, Tuberculosis" 180 Progressor ACS yes yes 2 -07-0561 07-0561_D0_TCRB Progressor 2 07-0561_D0_TCRB "12-18 Years (Adolescence), 15 Years, Female, HLA-A*2305, HLA-A*3001, HLA-B*0702, HLA-B*4202, HLA-C*0702, HLA-C*1701, HLA-DQA1*0102, HLA-DQB1*0501, HLA-DQB1*0602, HLA-DRB1*1201, HLA-DRB1*1503, Tuberculosis" 0 Progressor ACS yes yes 2 -07-0119 07-0119_D180_TCRB Controller 2 07-0119_D180_TCRB "12-18 Years (Adolescence), 17 Years, HLA-A*1101, HLA-A*3001, HLA-B*3501, HLA-B*5801, HLA-C*0401, HLA-C*0602, HLA-DQA1*0101, HLA-DQA1*0302, HLA-DQB1*0302, HLA-DQB1*0501, HLA-DRB1*0101, HLA-DRB1*0401, Male, Tuberculosis" 180 Controller ACS yes yes 2 -07-1003 07-1003_D360_TCRB Progressor 0 07-1003_D360_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*2902, HLA-A*6801, HLA-B*1501, HLA-B*4201, HLA-C*0401, HLA-C*1701, HLA-DPA1*0201, HLA-DPA1*0301, HLA-DPB1*0901, HLA-DPB1*10501, HLA-DQA1*0103, HLA-DQA1*0401, HLA-DQB1*0402, HLA-DQB1*0601, HLA-DRB1*0302, HLA-DRB1*1502, HLA-DRB3*0101, HLA-DRB5*0101, Tuberculosis" 360 Progressor ACS no yes 0 -07-0080 07-0080_D0_TCRB Controller 2 07-0080_D0_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*0101, HLA-A*2402, HLA-B*4403, HLA-B*5101, HLA-C*0308, HLA-C*0701, HLA-DQA1*0103, HLA-DQA1*0201, HLA-DQB1*0201, HLA-DQB1*0503, HLA-DRB1*0405, HLA-DRB1*0701, Tuberculosis" 0 Controller ACS no yes 2 -04-0741 04-0741_D0_TCRB Controller 0 04-0741_D0_TCRB "12-18 Years (Adolescence), 14 Years, Female, HLA-A*2902, HLA-A*6802, HLA-B*1503, HLA-B*4201, HLA-C*0202, HLA-C*1701, HLA-DQA1*0102, HLA-DQA1*0501, HLA-DQB1*0309, HLA-DQB1*0609, HLA-DRB1*1102, HLA-DRB1*1302, Tuberculosis" 0 Controller ACS yes yes 0 -07-0692 07-0692_D360_TCRB Progressor 2 07-0692_D360_TCRB "12-18 Years (Adolescence), 14 Years, Female, HLA-A*0301, HLA-A*3002, HLA-B*1508, HLA-B*1510, HLA-C*0102, HLA-C*03, HLA-DPA1*0103, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*0201, HLA-DQA1*0103, HLA-DQA1*0201, HLA-DQB1*0202, HLA-DQB1*0603, HLA-DRB1*0701, HLA-DRB1*1302, HLA-DRB3*0101, HLA-DRB4*0103, Tuberculosis" 360 Progressor ACS yes yes 2 -04-1241 04-1241_D360_TCRB Progressor 0 04-1241_D360_TCRB "12-18 Years (Adolescence), 17 Years, HLA-A*2301, HLA-A*2903, HLA-B*1531, HLA-B*5802, HLA-C*0602, HLA-C*1801, HLA-DQA1*0102, HLA-DQB1*0611, HLA-DRB1*1302, HLA-DRB1*1501, Male, Tuberculosis" 360 Progressor ACS yes yes 0 -04-1241 04-1241_D180_TCRB Progressor 0 04-1241_D180_TCRB "12-18 Years (Adolescence), 17 Years, HLA-A*2301, HLA-A*2903, HLA-B*1531, HLA-B*5802, HLA-C*0602, HLA-C*1801, HLA-DQA1*0102, HLA-DQB1*0611, HLA-DRB1*1302, HLA-DRB1*1501, Male, Tuberculosis" 180 Progressor ACS yes yes 0 -07-0262 07-0262_D360_TCRB Progressor 1 07-0262_D360_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*2402, HLA-A*3201, HLA-B*1501, HLA-B*5802, HLA-C*0303, HLA-C*0602, HLA-DQA1*0103, HLA-DQA1*0302, HLA-DQB1*0302, HLA-DQB1*0611, HLA-DRB1*0401, HLA-DRB1*1301, Tuberculosis" 360 Progressor ACS yes yes 1 -07-0060 07-0060_D0_TCRB Progressor 2 07-0060_D0_TCRB "12-18 Years (Adolescence), 18 Years, Female, HLA-A*0301, HLA-B*0702, HLA-B*5802, HLA-C*0602, HLA-C*0702, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*0101, HLA-DPB1*0402, HLA-DQA1*0102, HLA-DQA1*0505, HLA-DQB1*0319, HLA-DQB1*0602, HLA-DRB1*0301, HLA-DRB3*0202, HLA-DRB5*0101, Tuberculosis" 0 Progressor ACS yes yes 2 -04-0859 04-0859_D0_TCRB Progressor 2 04-0859_D0_TCRB "12-18 Years (Adolescence), 16 Years, Female, HLA-A*3002, HLA-B*1524, HLA-B*4501, HLA-C*0303, HLA-C*1601, HLA-DPA1*0103, HLA-DPB1*0301, HLA-DPB1*0401, HLA-DQA1*0101, HLA-DQA1*0505, HLA-DQB1*0501, HLA-DRB1*0102, HLA-DRB1*1201, HLA-DRB3*0202, Tuberculosis" 0 Progressor ACS yes yes 2 -07-1153 07-1153_D360_TCRB Progressor 0 07-1153_D360_TCRB "12-18 Years (Adolescence), 14 Years, Female, HLA-A*6802, HLA-A*7402, HLA-B*1503, HLA-B*5802, HLA-C*0210, HLA-C*0602, HLA-DPA1*0202, HLA-DPA1*0301, HLA-DPB1*0101, HLA-DPB1*10501, HLA-DQA1*0303, HLA-DQA1*0401, HLA-DQB1*0402, HLA-DRB1*0302, HLA-DRB1*0404, HLA-DRB3*0101, HLA-DRB4*0101, Tuberculosis" 360 Progressor ACS yes yes 0 -07-0262 07-0262_D540_TCRB Progressor 1 07-0262_D540_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*2402, HLA-A*3201, HLA-B*1501, HLA-B*5802, HLA-C*0303, HLA-C*0602, HLA-DQA1*0103, HLA-DQA1*0302, HLA-DQB1*0302, HLA-DQB1*0611, HLA-DRB1*0401, HLA-DRB1*1301, Tuberculosis" 540 Progressor ACS yes yes 1 -04-0843 04-0843_D0_TCRB Controller 1 04-0843_D0_TCRB "12-18 Years (Adolescence), 15 Years, HLA-A*0205, HLA-A*0211, HLA-B*4402, HLA-B*5801, HLA-C*0602, HLA-C*1502, HLA-DPA1*0103, HLA-DPA1*0301, HLA-DPB1*0401, HLA-DPB1*0402, HLA-DQA1*0102, HLA-DQB1*0503, HLA-DQB1*0602, HLA-DRB1*1404, HLA-DRB1*1503, HLA-DRB3*0202, HLA-DRB5*0101, Male, Tuberculosis" 0 Controller ACS yes yes 1 -07-0080 07-0080_D360_TCRB Controller 2 07-0080_D360_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*0101, HLA-A*2402, HLA-B*4403, HLA-B*5101, HLA-C*0308, HLA-C*0701, HLA-DQA1*0103, HLA-DQA1*0201, HLA-DQB1*0201, HLA-DQB1*0503, HLA-DRB1*0405, HLA-DRB1*0701, Tuberculosis" 360 Controller ACS yes yes 2 -07-0177 07-0177-D540_TCRB Controller 1 07-0177-D540_TCRB "12-18 Years (Adolescence), 16 Years, Female, HLA-A*0101, HLA-A*3004, HLA-B*0801, HLA-B*3901, HLA-C*0210, HLA-C*0701, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*0101, HLA-DPB1*1701, HLA-DQA1*0201, HLA-DQA1*0501, HLA-DQB1*0201, HLA-DQB1*0602, HLA-DRB1*0301, HLA-DRB1*1404, HLA-DRB3*0101, HLA-DRB3*0202, Tuberculosis" 540 Controller ACS yes yes 1 -04-1104 04-1104-D0_TCRB Controller 2 04-1104-D0_TCRB "12-18 Years (Adolescence), 17 Years, HLA-A*2601, HLA-A*3002, HLA-B*1302, HLA-B*4101, HLA-C*1601, HLA-C*1701, HLA-DQA1*0501, HLA-DQB1*0301, HLA-DRB1*1102, Male, Tuberculosis" 0 Controller ACS yes yes 2 -04-0910 04-0910_D360_TCRB Progressor 1 04-0910_D360_TCRB "12-18 Years (Adolescence), 13 Years, Female, HLA-A*4301, HLA-A*6801, HLA-B*1503, HLA-B*4006, HLA-C*1502, HLA-C*1801, HLA-DPA1*0104, HLA-DPA1*0301, HLA-DPB1*10501, HLA-DPB1*1501, HLA-DQA1*0102, HLA-DQA1*0103, HLA-DQB1*0601, HLA-DQB1*0602, HLA-DRB1*1501, HLA-DRB1*1503, HLA-DRB5*0101, Tuberculosis" 360 Progressor ACS yes yes 1 -04-0333 04-0333_D180_TCRB Controller 0 04-0333_D180_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*3101, HLA-A*6801, HLA-B*1401, HLA-B*5802, HLA-C*0602, HLA-C*0804, HLA-DQA1*0102, HLA-DQB1*0501, HLA-DQB1*0603, HLA-DRB1*1201, HLA-DRB1*1301, Tuberculosis" 180 Controller ACS yes yes 0 -04-1241 04-1241_D0_TCRB Progressor 0 04-1241_D0_TCRB "12-18 Years (Adolescence), 17 Years, HLA-A*2301, HLA-A*2903, HLA-B*1531, HLA-B*5802, HLA-C*0602, HLA-C*1801, HLA-DQA1*0102, HLA-DQB1*0611, HLA-DRB1*1302, HLA-DRB1*1501, Male, Tuberculosis" 0 Progressor ACS yes yes 0 -09-0462 09-0462_D0_TCRB Controller 0 09-0462_D0_TCRB "12-18 Years (Adolescence), 16 Years, HLA-A*2301, HLA-A*2601, HLA-B*2705, HLA-B*5101, HLA-C*0210, HLA-C*0701, HLA-DPA1*0201, HLA-DPA1*0301, HLA-DPB1*0101, HLA-DPB1*10501, HLA-DQA1*0301, HLA-DQA1*0501, HLA-DQB1*0202, HLA-DQB1*0302, HLA-DRB1*0401, HLA-DRB1*0701, HLA-DRB3*0202, HLA-DRB4*0101, Male, Tuberculosis" 0 Controller ACS no yes 0 -07-1112 07-1112_D360_TCRB Controller 1 07-1112_D360_TCRB "12-18 Years (Adolescence), 14 Years, Female, HLA-A*0205, HLA-A*2902, HLA-B*1401, HLA-B*1503, HLA-C*0202, HLA-C*0804, HLA-DPA1*0103, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*1801, HLA-DQA1*0101, HLA-DQA1*0102, HLA-DQB1*0501, HLA-DQB1*0602, HLA-DRB1*0102, HLA-DRB1*1501, Tuberculosis" 360 Controller ACS yes yes 1 -04-0699 04-0699_D360_TCRB Controller 1 04-0699_D360_TCRB "12-18 Years (Adolescence), 14 Years, Female, HLA-A*0205, HLA-A*1101, HLA-B*0801, HLA-B*4701, HLA-C*0602, HLA-C*0702, HLA-DPA1*0103, HLA-DPB1*0201, HLA-DPB1*0301, HLA-DQA1*0101, HLA-DQA1*0501, HLA-DQB1*0601, HLA-DRB1*0301, HLA-DRB1*1501, HLA-DRB3*0202, HLA-DRB5*0101, Tuberculosis" 360 Controller ACS yes yes 1 -04-0695 04-0695_D540_TCRB Progressor 1 04-0695_D540_TCRB "12-18 Years (Adolescence), 14 Years, HLA-A*2902, HLA-A*4301, HLA-B*1510, HLA-B*4403, HLA-C*0401, HLA-C*0701, HLA-DPA1*0103, HLA-DPA1*0202, HLA-DPB1*0201, HLA-DPB1*0402, HLA-DQA1*0102, HLA-DQA1*0303, HLA-DQB1*0302, HLA-DQB1*0602, HLA-DRB1*0401, HLA-DRB1*1101, HLA-DRB3*0202, HLA-DRB4*0101, Male, Tuberculosis" 540 Progressor ACS yes yes 1 -07-0262 07-0262_D180_TCRB Progressor 1 07-0262_D180_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*2402, HLA-A*3201, HLA-B*1501, HLA-B*5802, HLA-C*0303, HLA-C*0602, HLA-DQA1*0103, HLA-DQA1*0302, HLA-DQB1*0302, HLA-DQB1*0611, HLA-DRB1*0401, HLA-DRB1*1301, Tuberculosis" 180 Progressor ACS yes yes 1 -07-1135 07-1135_D360_TCRB Controller 1 07-1135_D360_TCRB "12-18 Years (Adolescence), 14 Years, Female, HLA-A*0201, HLA-A*2402, HLA-B*1502, HLA-B*4201, HLA-C*0801, HLA-C*1701, HLA-DPA1*0103, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*0402, HLA-DQA1*0401, HLA-DQA1*0601, HLA-DQB1*0301, HLA-DQB1*0302, HLA-DRB1*0302, HLA-DRB1*1202, HLA-DRB3*0101, HLA-DRB3*0301, Tuberculosis" 360 Controller ACS yes yes 1 -04-0695 04-0695_D180_TCRB Progressor 1 04-0695_D180_TCRB "12-18 Years (Adolescence), 14 Years, HLA-A*2902, HLA-A*4301, HLA-B*1510, HLA-B*4403, HLA-C*0401, HLA-C*0701, HLA-DPA1*0103, HLA-DPA1*0202, HLA-DPB1*0201, HLA-DPB1*0402, HLA-DQA1*0102, HLA-DQA1*0303, HLA-DQB1*0302, HLA-DQB1*0602, HLA-DRB1*0401, HLA-DRB1*1101, HLA-DRB3*0202, HLA-DRB4*0101, Male, Tuberculosis" 180 Progressor ACS yes yes 1 -07-0119 07-0119_D360_TCRB Controller 2 07-0119_D360_TCRB "12-18 Years (Adolescence), 17 Years, HLA-A*1101, HLA-A*3001, HLA-B*3501, HLA-B*5801, HLA-C*0401, HLA-C*0602, HLA-DQA1*0101, HLA-DQA1*0302, HLA-DQB1*0302, HLA-DQB1*0501, HLA-DRB1*0101, HLA-DRB1*0401, Male, Tuberculosis" 360 Controller ACS yes yes 2 -07-0386 07-0386_D360_TCRB Progressor 0 07-0386_D360_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*2301, HLA-A*4301, HLA-B*1501, HLA-B*1510, HLA-C*0401, HLA-C*1601, HLA-DPA1*0201, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*1301, HLA-DQA1*0102, HLA-DQA1*0505, HLA-DQB1*0301, HLA-DQB1*0602, HLA-DRB1*1101, HLA-DRB1*1501, HLA-DRB3*0202, Tuberculosis" 360 Progressor ACS yes yes 0 -07-0080 07-0080_D180_TCRB Controller 2 07-0080_D180_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*0101, HLA-A*2402, HLA-B*4403, HLA-B*5101, HLA-C*0308, HLA-C*0701, HLA-DQA1*0103, HLA-DQA1*0201, HLA-DQB1*0201, HLA-DQB1*0503, HLA-DRB1*0405, HLA-DRB1*0701, Tuberculosis" 180 Controller ACS no yes 2 -07-0208 07-0208_D0_TCRB Controller 1 07-0208_D0_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*2301, HLA-A*3004, HLA-B*1503, HLA-B*4901, HLA-C*0401, HLA-C*1701, HLA-DPA1*0201, HLA-DPB1*1101, HLA-DPB1*3401, HLA-DQA1*0102, HLA-DQA1*0103, HLA-DQB1*0602, HLA-DRB1*1301, HLA-DRB1*1503, HLA-DRB3*0202, HLA-DRB5*0101, Tuberculosis" 0 Controller ACS yes yes 1 -07-0692 07-0692_D180_TCRB Progressor 2 07-0692_D180_TCRB "12-18 Years (Adolescence), 14 Years, Female, HLA-A*0301, HLA-A*3002, HLA-B*1508, HLA-B*1510, HLA-C*0102, HLA-C*03, HLA-DPA1*0103, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*0201, HLA-DQA1*0103, HLA-DQA1*0201, HLA-DQB1*0202, HLA-DQB1*0603, HLA-DRB1*0701, HLA-DRB1*1302, HLA-DRB3*0101, HLA-DRB4*0103, Tuberculosis" 180 Progressor ACS yes yes 2 -07-0177 07-0177-D180_TCRB Controller 0 07-0177-D180_TCRB "12-18 Years (Adolescence), 16 Years, Female, HLA-A*0101, HLA-A*3004, HLA-B*0801, HLA-B*3901, HLA-C*0210, HLA-C*0701, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*0101, HLA-DPB1*1701, HLA-DQA1*0201, HLA-DQA1*0501, HLA-DQB1*0201, HLA-DQB1*0602, HLA-DRB1*0301, HLA-DRB1*1404, HLA-DRB3*0101, HLA-DRB3*0202, Tuberculosis" 180 Controller ACS yes yes 0 -07-0262 07-0262_D0_TCRB Progressor 1 07-0262_D0_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*2402, HLA-A*3201, HLA-B*1501, HLA-B*5802, HLA-C*0303, HLA-C*0602, HLA-DQA1*0103, HLA-DQA1*0302, HLA-DQB1*0302, HLA-DQB1*0611, HLA-DRB1*0401, HLA-DRB1*1301, Tuberculosis" 0 Progressor ACS yes yes 1 -07-1153 07-1153_D0_TCRB Progressor 0 07-1153_D0_TCRB "12-18 Years (Adolescence), 14 Years, Female, HLA-A*6802, HLA-A*7402, HLA-B*1503, HLA-B*5802, HLA-C*0210, HLA-C*0602, HLA-DPA1*0202, HLA-DPA1*0301, HLA-DPB1*0101, HLA-DPB1*10501, HLA-DQA1*0303, HLA-DQA1*0401, HLA-DQB1*0402, HLA-DRB1*0302, HLA-DRB1*0404, HLA-DRB3*0101, HLA-DRB4*0101, Tuberculosis" 0 Progressor ACS yes yes 0 -07-1135 07-1135_D540_TCRB Controller 1 07-1135_D540_TCRB "12-18 Years (Adolescence), 14 Years, Female, HLA-A*0201, HLA-A*2402, HLA-B*1502, HLA-B*4201, HLA-C*0801, HLA-C*1701, HLA-DPA1*0103, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*0402, HLA-DQA1*0401, HLA-DQA1*0601, HLA-DQB1*0301, HLA-DQB1*0302, HLA-DRB1*0302, HLA-DRB1*1202, HLA-DRB3*0101, HLA-DRB3*0301, Tuberculosis" 540 Controller ACS yes yes 1 -09-0296 09-0296_D0_TCRB Controller 2 09-0296_D0_TCRB "12-18 Years (Adolescence), 15 Years, HLA-A*0101, HLA-A*3201, HLA-B*0702, HLA-B*0801, HLA-C*0701, HLA-DQA1*0302, HLA-DQB1*0201, HLA-DQB1*0302, HLA-DRB1*0401, HLA-DRB1*0701, Male, Tuberculosis" 0 Controller ACS yes yes 2 -07-1112 07-1112_D0_TCRB Controller 1 07-1112_D0_TCRB "12-18 Years (Adolescence), 14 Years, Female, HLA-A*0205, HLA-A*2902, HLA-B*1401, HLA-B*1503, HLA-C*0202, HLA-C*0804, HLA-DPA1*0103, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*1801, HLA-DQA1*0101, HLA-DQA1*0102, HLA-DQB1*0501, HLA-DQB1*0602, HLA-DRB1*0102, HLA-DRB1*1501, Tuberculosis" 0 Controller ACS yes yes 1 -07-0692 07-0692_D0_TCRB Progressor 2 07-0692_D0_TCRB "12-18 Years (Adolescence), 14 Years, Female, HLA-A*0301, HLA-A*3002, HLA-B*1508, HLA-B*1510, HLA-C*0102, HLA-C*03, HLA-DPA1*0103, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*0201, HLA-DQA1*0103, HLA-DQA1*0201, HLA-DQB1*0202, HLA-DQB1*0603, HLA-DRB1*0701, HLA-DRB1*1302, HLA-DRB3*0101, HLA-DRB4*0103, Tuberculosis" 0 Progressor ACS yes yes 2 -04-0910 04-0910_D0_TCRB Progressor 1 04-0910_D0_TCRB "12-18 Years (Adolescence), 13 Years, Female, HLA-A*4301, HLA-A*6801, HLA-B*1503, HLA-B*4006, HLA-C*1502, HLA-C*1801, HLA-DPA1*0104, HLA-DPA1*0301, HLA-DPB1*10501, HLA-DPB1*1501, HLA-DQA1*0102, HLA-DQA1*0103, HLA-DQB1*0601, HLA-DQB1*0602, HLA-DRB1*1501, HLA-DRB1*1503, HLA-DRB5*0101, Tuberculosis" 0 Progressor ACS yes yes 1 -07-0208 07-0208_D360_TCRB Controller 1 07-0208_D360_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*2301, HLA-A*3004, HLA-B*1503, HLA-B*4901, HLA-C*0401, HLA-C*1701, HLA-DPA1*0201, HLA-DPB1*1101, HLA-DPB1*3401, HLA-DQA1*0102, HLA-DQA1*0103, HLA-DQB1*0602, HLA-DRB1*1301, HLA-DRB1*1503, HLA-DRB3*0202, HLA-DRB5*0101, Tuberculosis" 360 Controller ACS yes yes 1 -07-1135 07-1135_D0_TCRB Controller 1 07-1135_D0_TCRB "12-18 Years (Adolescence), 14 Years, Female, HLA-A*0201, HLA-A*2402, HLA-B*1502, HLA-B*4201, HLA-C*0801, HLA-C*1701, HLA-DPA1*0103, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*0402, HLA-DQA1*0401, HLA-DQA1*0601, HLA-DQB1*0301, HLA-DQB1*0302, HLA-DRB1*0302, HLA-DRB1*1202, HLA-DRB3*0101, HLA-DRB3*0301, Tuberculosis" 0 Controller ACS yes yes 1 -07-0630 07-0630-D540_TCRB Progressor 1 07-0630-D540_TCRB "12-18 Years (Adolescence), 16 Years, Female, HLA-A*2310, HLA-A*2901, HLA-B*1502, HLA-B*5801, HLA-C*0401, HLA-C*0602, HLA-DPA1*0201, HLA-DPA1*0301, HLA-DPB1*1101, HLA-DPB1*1701, HLA-DQA1*0201, HLA-DQA1*0501, HLA-DQB1*0602, HLA-DQB1*0609, HLA-DRB1*1306, HLA-DRB1*1501, HLA-DRB3*0101, Tuberculosis" 540 Progressor ACS yes yes 1 -01-0935 01-0935_D0_TCRB Controller 0 01-0935_D0_TCRB "12-18 Years (Adolescence), 13 Years, Female, HLA-A*2301, HLA-B*1503, HLA-B*1516, HLA-C*0202, HLA-C*1402, HLA-DPA1*0201, HLA-DPA1*0301, HLA-DPB1*10501, HLA-DPB1*1301, HLA-DQA1*0501, HLA-DQA1*0511, HLA-DQB1*0202, HLA-DQB1*0301, HLA-DRB1*0302, HLA-DRB1*1101, HLA-DRB3*0101, HLA-DRB3*0202, Tuberculosis" 0 Controller ACS yes yes 0 -07-1153 07-1153_D540_TCRB Progressor 0 07-1153_D540_TCRB "12-18 Years (Adolescence), 14 Years, Female, HLA-A*6802, HLA-A*7402, HLA-B*1503, HLA-B*5802, HLA-C*0210, HLA-C*0602, HLA-DPA1*0202, HLA-DPA1*0301, HLA-DPB1*0101, HLA-DPB1*10501, HLA-DQA1*0303, HLA-DQA1*0401, HLA-DQB1*0402, HLA-DRB1*0302, HLA-DRB1*0404, HLA-DRB3*0101, HLA-DRB4*0101, Tuberculosis" 540 Progressor ACS yes yes 0 -07-0630 07-0630-D180_TCRB Progressor 1 07-0630-D180_TCRB "12-18 Years (Adolescence), 16 Years, Female, HLA-A*2310, HLA-A*2901, HLA-B*1502, HLA-B*5801, HLA-C*0401, HLA-C*0602, HLA-DPA1*0201, HLA-DPA1*0301, HLA-DPB1*1101, HLA-DPB1*1701, HLA-DQA1*0201, HLA-DQA1*0501, HLA-DQB1*0602, HLA-DQB1*0609, HLA-DRB1*1306, HLA-DRB1*1501, HLA-DRB3*0101, Tuberculosis" 180 Progressor ACS yes yes 1 -07-0177 07-0177-D0_TCRB Controller 2 07-0177-D0_TCRB "12-18 Years (Adolescence), 16 Years, Female, HLA-A*0101, HLA-A*3004, HLA-B*0801, HLA-B*3901, HLA-C*0210, HLA-C*0701, HLA-DPA1*0103, HLA-DPA1*0201, HLA-DPB1*0101, HLA-DPB1*1701, HLA-DQA1*0201, HLA-DQA1*0501, HLA-DQB1*0201, HLA-DQB1*0602, HLA-DRB1*0301, HLA-DRB1*1404, HLA-DRB3*0101, HLA-DRB3*0202, Tuberculosis" 0 Controller ACS yes yes 2 -07-1135 07-1135_D180_TCRB Controller 1 07-1135_D180_TCRB "12-18 Years (Adolescence), 14 Years, Female, HLA-A*0201, HLA-A*2402, HLA-B*1502, HLA-B*4201, HLA-C*0801, HLA-C*1701, HLA-DPA1*0103, HLA-DPA1*0202, HLA-DPB1*0101, HLA-DPB1*0402, HLA-DQA1*0401, HLA-DQA1*0601, HLA-DQB1*0301, HLA-DQB1*0302, HLA-DRB1*0302, HLA-DRB1*1202, HLA-DRB3*0101, HLA-DRB3*0301, Tuberculosis" 180 Controller ACS yes yes 1 -07-1003 07-1003_D180_TCRB Progressor 0 07-1003_D180_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*2902, HLA-A*6801, HLA-B*1501, HLA-B*4201, HLA-C*0401, HLA-C*1701, HLA-DPA1*0201, HLA-DPA1*0301, HLA-DPB1*0901, HLA-DPB1*10501, HLA-DQA1*0103, HLA-DQA1*0401, HLA-DQB1*0402, HLA-DQB1*0601, HLA-DRB1*0302, HLA-DRB1*1502, HLA-DRB3*0101, HLA-DRB5*0101, Tuberculosis" 180 Progressor ACS no yes 0 -07-0202 07-0202-D0_TCRB Controller 2 07-0202-D0_TCRB "12-18 Years (Adolescence), 16 Years, Female, HLA-A*0205, HLA-B*1517, HLA-C*0304, HLA-C*0701, HLA-DQA1*0102, HLA-DQB1*0608, HLA-DRB1*1302, HLA-DRB1*1503, Tuberculosis" 0 Controller ACS yes yes 2 -07-0080 07-0080_D540_TCRB Controller 2 07-0080_D540_TCRB "12-18 Years (Adolescence), 17 Years, Female, HLA-A*0101, HLA-A*2402, HLA-B*4403, HLA-B*5101, HLA-C*0308, HLA-C*0701, HLA-DQA1*0103, HLA-DQA1*0201, HLA-DQB1*0201, HLA-DQB1*0503, HLA-DRB1*0405, HLA-DRB1*0701, Tuberculosis" 540 Controller ACS yes yes 2 -04-0741 04-0741_D180_TCRB Controller 0 04-0741_D180_TCRB "12-18 Years (Adolescence), 14 Years, Female, HLA-A*2902, HLA-A*6802, HLA-B*1503, HLA-B*4201, HLA-C*0202, HLA-C*1701, HLA-DQA1*0102, HLA-DQA1*0501, HLA-DQB1*0309, HLA-DQB1*0609, HLA-DRB1*1102, HLA-DRB1*1302, Tuberculosis" 180 Controller ACS yes yes 0 -07-0561 07-0561_D180_TCRB Progressor 2 07-0561_D180_TCRB "12-18 Years (Adolescence), 15 Years, Female, HLA-A*2305, HLA-A*3001, HLA-B*0702, HLA-B*4202, HLA-C*0702, HLA-C*1701, HLA-DQA1*0102, HLA-DQB1*0501, HLA-DQB1*0602, HLA-DRB1*1201, HLA-DRB1*1503, Tuberculosis" 180 Progressor ACS no yes 2 \ No newline at end of file diff --git a/immunoSEQ/tuberculosis/repertoires/01-0935_D0_TCRB.tsv.gz b/immunoSEQ/tuberculosis/repertoires/01-0935_D0_TCRB.tsv.gz deleted file mode 100644 index 4869e2dbc4872593479523aef905912e9f50ae75..0000000000000000000000000000000000000000 --- a/immunoSEQ/tuberculosis/repertoires/01-0935_D0_TCRB.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:f1a312197a1e45f4d7ac4b3fe6a2df91dbf65e7f210c2d2600a5de36d00764c3 -size 1281245 diff --git a/immunoSEQ/tuberculosis/repertoires/04-0333_D0_TCRB.tsv.gz b/immunoSEQ/tuberculosis/repertoires/04-0333_D0_TCRB.tsv.gz deleted file mode 100644 index 4624a1cb9eb703ccd7e995a2be532c317d7ffd31..0000000000000000000000000000000000000000 --- a/immunoSEQ/tuberculosis/repertoires/04-0333_D0_TCRB.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:d840a5f1b7a0bba4770582ba3e8dfcd78014a98b71d452e2360226d90da25867 -size 2477405 diff --git a/immunoSEQ/tuberculosis/repertoires/04-0333_D180_TCRB.tsv.gz b/immunoSEQ/tuberculosis/repertoires/04-0333_D180_TCRB.tsv.gz deleted file mode 100644 index db6f750e00d6c4c896c2f9bf4fef2699d3141064..0000000000000000000000000000000000000000 --- a/immunoSEQ/tuberculosis/repertoires/04-0333_D180_TCRB.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:034561fb531ca0503855d818a17041c63afcf3cb32b6a847afcbd683a13cc01b -size 1994079 diff --git a/immunoSEQ/tuberculosis/repertoires/04-0695_D0_TCRB.tsv.gz b/immunoSEQ/tuberculosis/repertoires/04-0695_D0_TCRB.tsv.gz deleted file mode 100644 index aa9c45c7e80c6d0b986633156421d5e26b429dac..0000000000000000000000000000000000000000 --- a/immunoSEQ/tuberculosis/repertoires/04-0695_D0_TCRB.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:38c98dd9de4f5c7d98d25e0650e7dc6179b824f0f4f344ec61f453ab6e2582b6 -size 1243665 diff --git a/immunoSEQ/tuberculosis/repertoires/04-0695_D180_TCRB.tsv.gz b/immunoSEQ/tuberculosis/repertoires/04-0695_D180_TCRB.tsv.gz deleted file mode 100644 index 1e3940bb73e3b9dcc170c5a0b64f9d1374a30e1d..0000000000000000000000000000000000000000 --- a/immunoSEQ/tuberculosis/repertoires/04-0695_D180_TCRB.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:2716c527c51f87462221856924c854c23abec040e5b0ab4dbfa1809ddf6297e7 -size 1655896 diff --git a/immunoSEQ/tuberculosis/repertoires/04-0695_D540_TCRB.tsv.gz b/immunoSEQ/tuberculosis/repertoires/04-0695_D540_TCRB.tsv.gz deleted file mode 100644 index b26a4df5f3045a897b3390b09c9f22e9817ed857..0000000000000000000000000000000000000000 --- a/immunoSEQ/tuberculosis/repertoires/04-0695_D540_TCRB.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:f77afc165160313fea509036b6378642f1bf25c737aa9b60d3e66bfd0810934a -size 1901131 diff --git a/immunoSEQ/tuberculosis/repertoires/04-0699_D0_TCRB.tsv.gz b/immunoSEQ/tuberculosis/repertoires/04-0699_D0_TCRB.tsv.gz deleted file mode 100644 index b4ef67ae1ded88abadeb93c31913515f0623c12d..0000000000000000000000000000000000000000 --- a/immunoSEQ/tuberculosis/repertoires/04-0699_D0_TCRB.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:dbfeb385868dd30d67c22a281704849c9cda7959ab113bd4f7cd0e5890b072b2 -size 1305692 diff --git a/immunoSEQ/tuberculosis/repertoires/04-0699_D180_TCRB.tsv.gz b/immunoSEQ/tuberculosis/repertoires/04-0699_D180_TCRB.tsv.gz deleted file mode 100644 index 65ec83f8bfc089807496b6917a37110e164a667f..0000000000000000000000000000000000000000 --- a/immunoSEQ/tuberculosis/repertoires/04-0699_D180_TCRB.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:668e15506921f585f4e262c7165a98c207cea451e108233871afebfeadcd3689 -size 1971050 diff --git a/immunoSEQ/tuberculosis/repertoires/04-0699_D360_TCRB.tsv.gz b/immunoSEQ/tuberculosis/repertoires/04-0699_D360_TCRB.tsv.gz deleted file mode 100644 index 49c6ab8d18621026e93f5124375c61424eddf2bd..0000000000000000000000000000000000000000 --- a/immunoSEQ/tuberculosis/repertoires/04-0699_D360_TCRB.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:0c21bfa34f9bff507ea610d070cb123f1e75ab0678908614f1eabd7f1afaed6c -size 1540944 diff --git a/immunoSEQ/tuberculosis/repertoires/04-0741_D0_TCRB.tsv.gz b/immunoSEQ/tuberculosis/repertoires/04-0741_D0_TCRB.tsv.gz deleted file mode 100644 index ffa7fc6ca79b29801849946462a477bed762c8c9..0000000000000000000000000000000000000000 --- a/immunoSEQ/tuberculosis/repertoires/04-0741_D0_TCRB.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:2a0126ada107f18b22036e86bd8a84acdeb5940fc9530e7f9ec8a07b1e13c38f -size 2955115 diff --git a/immunoSEQ/tuberculosis/repertoires/04-0741_D180_TCRB.tsv.gz b/immunoSEQ/tuberculosis/repertoires/04-0741_D180_TCRB.tsv.gz deleted file mode 100644 index 0ff299f31c32fd4fcbcc482936fd7dfdb9ee04cc..0000000000000000000000000000000000000000 --- a/immunoSEQ/tuberculosis/repertoires/04-0741_D180_TCRB.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:8dda0ffa01c43193838be88aa23b4f2019c75d3c659d0e7899dde0cf227d87f8 -size 3531239 diff --git a/immunoSEQ/tuberculosis/repertoires/04-0843_D0_TCRB.tsv.gz b/immunoSEQ/tuberculosis/repertoires/04-0843_D0_TCRB.tsv.gz deleted file mode 100644 index 29a087bef46432631a103f26bd3c695814a05bcc..0000000000000000000000000000000000000000 --- a/immunoSEQ/tuberculosis/repertoires/04-0843_D0_TCRB.tsv.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid 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