"""EnvShip-Voyage data loader. Loads Track-I / Track-P samples and, for imputation, applies a named mask from the frozen mask bank. Sequences are returned in time order as float arrays with NaN at held-out / missing steps. Typical use: dl = VoyageLoader(build_dir) for s in dl.iter_track_i(split="test", mask_name="cont_6h"): # s.obs (input, NaN where held out), s.target (ground truth), s.eval_mask (where to score) ... """ from __future__ import annotations import glob from dataclasses import dataclass from pathlib import Path import numpy as np import pandas as pd SEQ_COLS = ["lat", "lon", "x_m", "y_m", "sog_kn", "cog_sin", "cog_cos", "head_sin", "head_cos", "observed_mask", "position_available", "interp_provenance"] @dataclass class ImputationSample: sample_id: str lat: np.ndarray lon: np.ndarray observed_mask: np.ndarray # 1 = real observation present mask: np.ndarray # 1 = held out for imputation eval_mask: np.ndarray # 1 = scored (held out AND ground-truth exists) feats: dict # remaining per-step features (NaN where held out) meta: dict def _to_arr(x): return np.array([np.nan if v is None else v for v in x], dtype=float) class VoyageLoader: def __init__(self, build_dir: str | Path): self.build = Path(build_dir) self.index = pd.read_parquet(self.build / "s11" / "sample_index_split.parquet") \ if (self.build / "s11" / "sample_index_split.parquet").exists() \ else pd.read_parquet(self.build / "s9" / "sample_index.parquet") self._mask_cache: dict[str, dict] = {} # ---- mask bank access ---- def _load_mask_partition(self, pidx: str) -> dict: if pidx not in self._mask_cache: npz = np.load(self.build / "s10" / "masks" / f"part-{pidx}.npz") self._mask_cache[pidx] = {k: npz[k] for k in npz.files if "|" in k} return self._mask_cache[pidx] def get_mask(self, sample_id: str, mask_name: str, n_steps: int, pidx: str | None = None) -> np.ndarray: # Mask npz partitions correspond 1:1 to the S9 track_i parquet partitions, so when the caller # already knows the partition (iter_track_i does) we look it up directly — no scan. Only a # stand-alone get_mask() with no pidx pays the one-time full scan to build sid->partition. if pidx is None: if not hasattr(self, "_sid2part"): self._sid2part = {} for f in glob.glob(str(self.build / "s10" / "masks" / "part-*.npz")): p = Path(f).stem.split("-")[1] npz = np.load(f) for k in npz.files: if "|" in k: self._sid2part[k.split("|")[0]] = p pidx = self._sid2part.get(sample_id) if pidx is None: return np.zeros(n_steps, dtype=np.uint8) arr = self._load_mask_partition(pidx).get(f"{sample_id}|{mask_name}") if arr is None: return np.zeros(n_steps, dtype=np.uint8) return np.unpackbits(arr)[:n_steps] # ---- iteration ---- def iter_track_i(self, split: str | None = None, mask_name: str = "cont_6h", window_len_h: int | None = None): keep = self.index if "kept" in keep.columns: keep = keep[keep["kept"]] if split: keep = keep[keep["split"] == split] if window_len_h: keep = keep[keep["window_len_h"] == window_len_h] wanted = set(keep["sample_id"]) for f in sorted(glob.glob(str(self.build / "s9" / "samples" / "track_i" / "part-*.parquet"))): pidx = Path(f).stem.split("-")[1] # this partition's mask npz is part-.npz df = pd.read_parquet(f) df = df[df["sample_id"].isin(wanted)] for _, row in df.iterrows(): yield self._make_imputation_sample(row, mask_name, pidx) def _make_imputation_sample(self, row, mask_name: str, pidx: str | None = None) -> ImputationSample: n = int(row["n_steps"]) observed = np.asarray(row["observed_mask"], dtype=np.uint8) mask = self.get_mask(row["sample_id"], mask_name, n, pidx=pidx) eval_mask = ((mask == 1) & (observed == 1)).astype(np.uint8) feats = {c: _to_arr(row[c]) for c in SEQ_COLS if c in row} return ImputationSample( sample_id=row["sample_id"], lat=_to_arr(row["lat"]), lon=_to_arr(row["lon"]), observed_mask=observed, mask=mask, eval_mask=eval_mask, feats=feats, meta={"window_len_h": int(row["window_len_h"]), "view_min": int(row["view_min"])}, )