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Opens the first channel and time point." + } +] diff --git a/examples/spinalcordtoolbox/t2-cord/sct_T2_spinalcord.nii.gz b/examples/spinalcordtoolbox/t2-cord/sct_T2_spinalcord.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..c4bc56e74f0c6ff74e152434c626e468f4f72c7d --- /dev/null +++ b/examples/spinalcordtoolbox/t2-cord/sct_T2_spinalcord.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:97638eee6df7c75b4de8921163e708420587de28b03eefb3fb1efbcdad659506 +size 9092309 diff --git a/examples/synthsr/flair/FLAIR.nii.gz b/examples/synthsr/flair/FLAIR.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..3fef7597e9303565cc9183dfdc536cb404d8b058 --- /dev/null +++ b/examples/synthsr/flair/FLAIR.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:87edd267540bcdb9734e4a42458c82c2aa8582c61ef6518a792bfdc1e89b5386 +size 2547127 diff --git a/examples/topofit/openneuro-t1/sub-01_T1w.nii.gz b/examples/topofit/openneuro-t1/sub-01_T1w.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..d0b5e3b4d8f3d3e0cd36dee8ac29d5d82b3efb91 --- /dev/null +++ b/examples/topofit/openneuro-t1/sub-01_T1w.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bdb7022ae229c5b8edd16425928c9243c562f84082b9b8e6f97cdba8b9354a98 +size 5663237 diff --git a/examples/vesselboost/brain-mra/chris_MRA.nii.gz b/examples/vesselboost/brain-mra/chris_MRA.nii.gz new file mode 100644 index 0000000000000000000000000000000000000000..b1e3dd3ffc99fa04ccfa3965d7bf73a5b9f62766 --- /dev/null +++ b/examples/vesselboost/brain-mra/chris_MRA.nii.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d4bf431c4b4223e3ea368c5c26ea7904c23d9d59496e14022e32a38a5270b63f +size 95078 diff --git a/examples/zarro/microscopy-stack/.zattrs b/examples/zarro/microscopy-stack/.zattrs new file mode 100644 index 0000000000000000000000000000000000000000..437a31f58f8ae8e3f3eb166384c09fbbe277301b --- /dev/null +++ b/examples/zarro/microscopy-stack/.zattrs @@ -0,0 +1,164 @@ +{ + "multiscales": [ + { + "axes": [ + { + "name": "t", + "type": "time", + "unit": "millisecond" + }, + { + "name": "c", + "type": "channel" + }, + { + "name": "z", + "type": "space", + "unit": "micrometer" + }, + { + "name": "y", + "type": "space", + "unit": "micrometer" + }, + { + "name": "x", + "type": "space", + "unit": "micrometer" + } + ], + "datasets": [ + { + "coordinateTransformations": [ + { + "scale": [ + 1.0, + 1.0, + 1.0, + 1.0, + 1.0 + ], + "type": "scale" + } + ], + "path": "0" + }, + { + "coordinateTransformations": [ + { + "scale": [ + 1.0, + 1.0, + 1.0, + 2.0, + 2.0 + ], + "type": "scale" + } + ], + "path": "1" + }, + { + "coordinateTransformations": [ + { + "scale": [ + 1.0, + 1.0, + 1.0, + 4.0, + 4.0 + ], + "type": "scale" + } + ], + "path": "2" + }, + { + "coordinateTransformations": [ + { + "scale": [ + 1.0, + 1.0, + 1.0, + 8.0, + 8.0 + ], + "type": "scale" + } + ], + "path": "3" + } + ], + "name": "s1_t7_c4_z3_Image_0", + "version": "0.4" + } + ], + "omero": { + "channels": [ + { + "active": true, + "coefficient": 1, + "color": "ff0000", + "family": "linear", + "inverted": false, + "label": "C:0", + "window": { + "end": 1.0, + "max": 1.0, + "min": 0.0, + "start": 0.0 + } + }, + { + "active": true, + "coefficient": 1, + "color": "00ff00", + "family": "linear", + "inverted": false, + "label": "C:1", + "window": { + "end": 1.0, + "max": 1.0, + "min": 0.0, + "start": 0.0 + } + }, + { + "active": true, + "coefficient": 1, + "color": "0000ff", + "family": "linear", + "inverted": false, + "label": "C:2", + "window": { + "end": 1.0, + "max": 1.0, + "min": 0.0, + "start": 0.0 + } + }, + { + "active": true, + "coefficient": 1, + "color": "ffff00", + "family": "linear", + "inverted": false, + "label": "C:3", + "window": { + "end": 1.0, + "max": 1.0, + "min": 0.0, + "start": 0.0 + } + } + ], + "id": 1, + "name": "Image_0", + "rdefs": { + "defaultT": 0, + "defaultZ": 1, + "model": "color" + }, + "version": "0.4" + } +} \ No newline at end of file diff --git a/examples/zarro/microscopy-stack/.zgroup b/examples/zarro/microscopy-stack/.zgroup new file mode 100644 index 0000000000000000000000000000000000000000..3b7daf227c1687f28bc23b69f183e27ce9a475c1 --- /dev/null +++ b/examples/zarro/microscopy-stack/.zgroup @@ -0,0 +1,3 @@ +{ + "zarr_format": 2 +} \ No newline at end of file diff --git a/examples/zarro/microscopy-stack/0/.zarray b/examples/zarro/microscopy-stack/0/.zarray new file mode 100644 index 0000000000000000000000000000000000000000..3ff6121ecc6939c11c2184efe122b5a3b45c798c --- /dev/null +++ b/examples/zarro/microscopy-stack/0/.zarray @@ -0,0 +1,28 @@ +{ + "chunks": [ + 1, + 1, + 3, + 1200, + 1800 + ], + "compressor": { + "blocksize": 0, + "clevel": 5, + "cname": "lz4", + "id": "blosc", + "shuffle": 1 + }, + "dtype": "