# Per-acquisition reconstruction parameters, shared by every folder's
# reconstruct.py. For each acquisition:
#   pipeline      -- which reconstruction to use:
#                    scanline (focused linear FI, per-beam),
#                    sector   (phased/steered focused, pipeline_sector.yaml),
#                    iq       (baseband IQ, pipeline_iq.yaml),
#                    compound (non-focused linear, pipeline.yaml).
#   zlims/xlims   -- display window in mm (framing only).
#   dynamic_range -- display dynamic range in dB (default [-60, 0]).
#   refocus       -- if true, also emit a REFoCUS variant (<name>_zea_refocus_bmode.png).
#                    REFoCUS (Bottenus 2018) inverts the transmit-encoding matrix to
#                    recover the multistatic (full-matrix-capture) dataset before DAS.
#                    Enabled for every acquisition with enough encoded transmits to make
#                    the inversion well posed (>= 8 transmit events). reconstruct.py picks
#                    the polar pipeline_refocus_sector.yaml for `sector` acquisitions and
#                    the linear/cartesian pipeline_refocus.yaml for everything else.
#                    NOT enabled where REFoCUS is ill-posed or undefined:
#                      * single/few-transmit acquisitions (plane-wave tracking with
#                        n_tx=1, PICMUS with 5 angles),
#                      * synthetic transmit aperture (STA) acquisitions, which are
#                        already multistatic (nothing to decode).

# A_cardiac
Verasonics_P2-4_apical_four_chamber_subject_1:
  pipeline: sector
  refocus: true
  zlims: [1, 110]
Verasonics_P2-4_parasternal_long_subject_1:
  pipeline: sector
  refocus: true
  zlims: [1, 110]

# B_carotid
L7_FI_carotid_cross_1:
  pipeline: scanline
  refocus: true
  zlims: [1, 60]
  xlims: [-19, 19]
L7_FI_carotid_cross_2:
  pipeline: scanline
  refocus: true
  zlims: [1, 60]
  xlims: [-19, 19]
L7_FI_carotid_cross_sub_2:
  pipeline: scanline
  refocus: true
  zlims: [1, 60]
  xlims: [-19, 19]

# C_verasonics_phantom
FI_P4_cysts_center:
  pipeline: sector
  refocus: true
  zlims: [1, 115]
FI_P4_point_scatterers:
  pipeline: sector
  refocus: true
  zlims: [1, 115]
L7_CPWC_193328:
  pipeline: compound
  refocus: true
  zlims: [0, 50]
  xlims: [-20, 20]
L7_CPWC_TheGB:
  pipeline: compound
  refocus: true
  zlims: [3, 45]
  xlims: [-20, 20]
L7_DW_TheGB:
  pipeline: compound
  refocus: true
  zlims: [3, 50]
  xlims: [-20, 20]
L7_FI_IUS2018:
  pipeline: scanline
  refocus: true
  zlims: [1, 60]
  xlims: [-19, 19]
L7_FI_TheGB:
  pipeline: scanline
  refocus: true
  zlims: [1, 60]
  xlims: [-19, 19]
L7_FI_Verasonics:
  pipeline: scanline
  refocus: true
  zlims: [1, 60]
  xlims: [-19, 19]
L7_FI_Verasonics_CIRS:
  pipeline: scanline
  refocus: true
  zlims: [1, 60]
  xlims: [-19, 19]
L7_FI_Verasonics_CIRS_points:
  pipeline: scanline
  refocus: true
  zlims: [1, 60]
  xlims: [-19, 19]
# STA (already multistatic -> REFoCUS N/A)
L7_STA_TheGB:
  pipeline: compound
  zlims: [3, 45]
  xlims: [-20, 20]
P4_FI_121444_45mm_focus:
  pipeline: sector
  refocus: true
  zlims: [1, 58]
# STA (already multistatic -> REFoCUS N/A)
STAI_UFF_CIRS_phantom:
  pipeline: compound
  zlims: [10, 80]
  xlims: [-15, 15]
# STA (already multistatic -> REFoCUS N/A)
experimental_STAI_dynamic_range:
  pipeline: compound
  zlims: [3, 55]
  xlims: [-19, 19]
# STA (n_tx == n_el == 128, already multistatic -> REFoCUS N/A)
experimental_dynamic_range_phantom:
  pipeline: compound
  zlims: [3, 58]
  xlims: [-19, 19]

# D_alpinion_phantom
Alpinion_L3-8_CPWC_hyperechoic_scatterers:
  pipeline: compound
  refocus: true
  zlims: [3, 55]
  xlims: [-19, 19]
Alpinion_L3-8_CPWC_hypoechoic:
  pipeline: compound
  refocus: true
  zlims: [5, 50]
  xlims: [-19, 19]
Alpinion_L3-8_FI_hyperechoic_scatterers:
  pipeline: scanline
  refocus: true
  zlims: [3, 55]
  xlims: [-19, 19]
Alpinion_L3-8_FI_hypoechoic:
  pipeline: scanline
  refocus: true
  zlims: [0, 60]
  xlims: [-19, 19]
  dynamic_range: [-50, 0]

# E_simulation
# Single plane wave (n_tx=1) -> REFoCUS N/A
FieldII_CPWC_point_scatterers_res_v2:
  pipeline: compound
  zlims: [35, 42]
  xlims: [-3, 3]
# Single plane wave (n_tx=1) -> REFoCUS N/A
FieldII_CPWC_simulation_v2:
  pipeline: compound
  zlims: [3, 45]
  xlims: [-20, 20]
FieldII_P4_point_scatterers:
  pipeline: sector
  refocus: true
  zlims: [1, 110]
# STA (already multistatic -> REFoCUS N/A)
FieldII_STAI_dynamic_range:
  pipeline: compound
  zlims: [5, 55]
  xlims: [-20, 20]
# STA (already multistatic -> REFoCUS N/A)
FieldII_STAI_simulated_dynamic_range:
  pipeline: compound
  zlims: [5, 55]
  xlims: [-20, 20]
# STA (already multistatic -> REFoCUS N/A)
FieldII_STAI_uniform_fov:
  pipeline: compound
  zlims: [1, 55]
  xlims: [-20, 20]
FieldII_speckle_DMASsimulation300000pts:
  pipeline: sector
  refocus: true
  zlims: [1, 60]
  xlims: [-14, 14]
# Baseband IQ, only 5 plane-wave angles -> REFoCUS N/A
PICMUS_numerical_calib_v2:
  pipeline: iq
  zlims: [5, 50]
  xlims: [-19, 19]
speckle_sim_FI_P4_probe_apod_1_speckle_long_many_angles:
  pipeline: sector
  refocus: true
  zlims: [1, 120]
speckle_sim_FI_P4_probe_apod_2_speckle_long_many_angles:
  pipeline: sector
  refocus: true
  zlims: [1, 120]
speckle_sim_FI_P4_probe_apod_3_speckle_long_many_angles:
  pipeline: sector
  refocus: true
  zlims: [1, 120]

# F_motion
# Plane-wave tracking (n_tx=1 per frame) -> REFoCUS N/A
ARFI_dataset:
  pipeline: compound
  zlims: [1, 40]
  xlims: [-19, 19]
SWE_L7_type_I:
  pipeline: compound
  zlims: [1, 40]
  xlims: [-19, 19]
SWE_L7_type_III:
  pipeline: compound
  zlims: [1, 40]
  xlims: [-19, 19]
SWE_L7_type_IV:
  pipeline: compound
  zlims: [1, 40]
  xlims: [-19, 19]