diff --git a/agents/agora/agent_401.json b/agents/agora/agent_401.json new file mode 100644 index 0000000000000000000000000000000000000000..c1f1673d59dcf6ffa7b43f6c88336537b6c4ca70 --- /dev/null +++ b/agents/agora/agent_401.json @@ -0,0 +1,964 @@ +{ + "id": 401, + "name": "Eubacterium_ventriosum_ATCC_27560", + "N_R": 1601, + "taxonomy": { + "k": 401, + "tax_distance": [ + "2.5250452608", + "2.1071673935", + "2.1004681644", + "2.3270508715", + "2.0084507976", + "2.0535794845", + "2.0348741867", + "2.0319315924", + "2.0959131907", + "2.0142690988", + "2.0313338022", + "2.139456116", + "2.1124738943", + "2.3404878522", + "2.3888446693", + "2.4191771799", + "2.299526782", + "2.3084508988", + "2.3439253744", + "1.8769096904", + "1.8122387137", + "1.561717455", + "1.4950670226", + "1.3735873459", + "1.1994080671", + "1.193596859", + "1.1902422876", + "1.192603342", + "1.176837052", + "1.1681512891", + "1.1706021952", + "1.2721881313", + "1.2817259341", + "1.2780920241", + "1.2937880927", + "1.2622865127", + "1.2850324568", + "1.3033383683", + "1.2843064053", + "1.5772470643", + "1.3220886856", + "1.2407276296", + "1.2474929358", + "1.2501005159", + "1.2468687739", + "1.2498421556", + "1.2449435507", + "1.245328586", + "1.2395136752", + "1.2315524856", + "1.1731303076", + "1.1786427076", + "1.1729018743", + "1.1450556037", + "1.1515773478", + "1.180679345", + "1.1546024582", + "1.1525864306", + "1.1733408362", + "1.1710009415", + "1.154259114", + "1.1796098856", + "1.1816846754", + "1.1803537822", + "1.1947449997", + "1.1964671616", + "1.1964671616", + "1.2031127443", + "1.2031127443", + "1.2031127443", + "1.2031127443", + "1.2031127443", + "1.2031127443", + "1.2031127443", + "1.2031127443", + "1.1990333816", + "1.1993791188", + "1.1929474112", + "1.2034398858", + "1.2025346439", + "1.1986364743", + "1.1968938007", + "1.1982123705", + "1.19471049", + "1.1896327417", + "1.1929778673", + "1.1984236341", + "1.1938854424", + "1.1788854863", + "1.1872566012", + "1.181981216", + "1.198129157", + "1.1934318678", + "1.1975654371", + "1.1755257265", + "1.1701255427", + "1.1841918978", + "1.1948523068", + "1.2116493498", + "1.1940590596", + "1.1840639411", + "1.1827461235", + "1.1634957436", + "1.1763742326", + "1.2352466776", + "1.2300947659", + "1.2969910232", + "1.2631517672", + "1.2003431264", + "1.2040693832", + "1.2068028503", + "1.1996987688", + "1.1996987688", + "1.1810748666", + "1.1839790129", + "1.1758784962", + "1.2114041949", + "1.1481816454", + "1.126090732", + "1.1439550883", + "1.130684093", + "1.1311096854", + "1.249361399", + "1.2565518498", + "1.2779928627", + "1.082589147", + "1.2523381003", + "1.2590133344", + "1.2436502421", + "1.2632842473", + "1.2524713333", + "1.2575378196", + "1.249041542", + "1.2420914369", + "1.2329617398", + "1.2336198602", + "1.2525337834", + "1.2256523395", + "1.207688129", + "1.3015760699", + "1.3029499436", + "1.2722615313", + "1.3298412219", + "1.2674198094", + "1.2729137522", + "1.2699527271", + "1.2946597122", + "1.2838372634", + "1.1919941914", + "1.1630841019", + "1.1242730419", + "1.1021717487", + "1.0935299424", + "1.0884097513", + "1.125281377", + "1.1277765029", + "1.099588434", + "1.0879504801", + "1.0915369891", + "1.1604900999", + "1.167198482", + "1.1368275354", + "1.2607456086", + "1.2552307132", + "1.2575717644", + "1.2152948382", + "1.2114408587", + "1.2493474324", + "1.2411706181", + "1.2099285956", + "1.2114879543", + "1.229507948", + "1.1862031533", + "1.1753670243", + "1.1765275768", + "1.2100139182", + "1.1981903655", + "1.1795635083", + "1.1985521306", + "1.1798841319", + "1.1936990741", + "1.1879165031", + "1.1868481211", + "1.2074065728", + "1.2031940254", + "1.18607498", + "1.220303354", + "1.2050691123", + "1.2101814213", + "1.2095747358", + "1.1739731054", + "1.1699528972", + "1.1544855456", + "1.1728320508", + "1.169765676", + "1.1440740822", + "1.1270613343", + "1.1217536834", + "1.126495468", + "1.1256368573", + "1.1584028172", + "1.1574221554", + "1.181461953", + "1.159352926", + "1.119844934", + "1.1230093448", + "1.1480712368", + "1.1443623527", + "1.120111736", + "1.1126543861", + "1.1150076454", + "1.1241851803", + "1.0499510834", + "1.0925541842", + "1.0768504135", + "1.0706886503", + "1.0644084055", + "1.0523057879", + "1.0554761273", + "1.0976482167", + "1.5320400479", + "1.616818247", + "1.5293536719", + "1.5145359598", + "1.492863327", + "1.0465409859", + "1.0653453919", + "1.115278257", + "1.076917505", + "1.092154708", + "1.2056918456", + "1.1594624527", + "1.1811141269", + "1.1397807808", + "1.0531190923", + "1.0655014352", + "1.0719925064", + "1.1324190432", + "1.1236195106", + "1.1217007796", + "1.1477030607", + "1.1450106251", + "1.1362425695", + "1.1677631931", + "1.1758466576", + "1.1600353844", + "1.1334171346", + "1.1280715615", + "1.1334822374", + "1.1221890962", + "1.0671582014", + "1.0722430233", + "1.0714877998", + "1.1182993843", + "1.0737291049", + "1.0561809065", + "1.1336057127", + "1.0868730729", + "1.0619556104", + "1.0749911016", + "1.045606588", + "1.0108202298", + "1.0949082656", + "1.097262052", + "1.1020392617", + "1.1073848597", + "1.0730838339", + "1.1337395832", + "1.1405756986", + "1.1370866961", + "1.1497517615", + "1.1358357187", + "1.1156198125", + "1.1070190438", + "1.153670912", + "1.1729491847", + "1.2236282046", + "1.0665505884", + "1.0357232943", + "1.1287290082", + "1.1277123083", + "1.1149332326", + "1.0718579455", + "1.1366812597", + "1.1276245075", + "1.1302767698", + "1.1614160751", + "1.1030749419", + "1.0883412391", + "1.0699661108", + "1.0982817495", + "1.0697888242", + "1.1249347415", + "1.1559281415", + "1.1785609893", + "1.1352448123", + "1.1065910238", + "1.1268379205", + "1.1065915321", + "1.0929775572", + "1.0577224863", + "1.0926720458", + "1.0237615699", + "1.0410269409", + "1.1238356519", + "1.1122009911", + "1.1093025648", + "1.119456872", + "1.1278197575", + "1.1171423963", + "1.1290829639", + "1.1175495064", + "1.1150879998", + "1.0834988682", + "1.089493774", + "1.0957517712", + "1.0829062258", + "1.1164448627", + "1.0486740744", + "1.1071720147", + "1.1043167821", + "1.0945573146", + "1.0937824382", + "1.119924563", + "1.0965333262", + "1.0662271882", + "0.9808990888", + "0.9927036336", + "0.9937209095", + "0.9377441323", + "0.9498710528", + "0.9465826508", + "0.9279084517", + "0.9365904034", + "0.9325496165", + "0.9225864667", + "0.9483874933", + "0.9450761566", + "0.9084468783", + "0.926985311", + "0.884744052", + "0.8874229908", + "0.9014134061", + "0.9029145158", + "0.8895846707", + "0.8790632766", + "0.9058177089", + "0.8917407618", + "0.8517344647", + "0.8590980003", + "1.0286655638", + "0.848999055", + "0.8535434093", + "0.8571471832", + "0.853094575", + "0.8202125483", + "0.8500212231", + "0.8700804653", + "0.872073189", + "0.8701555896", + "0.8534725006", + "0.852312571", + "0.8180761612", + "0.8203519627", + "0.9462353562", + "0.9574297123", + "0.843716488", + "0.8493738998", + "0.8394452082", + "0.8035770276", + "0.8291854245", + "0.81992031", + "0.8120555622", + "0.8112016318", + "0.8187261877", + "0.8127187139", + "0.8317876328", + "0.825711316", + "0.8374336668", + "0.832200891", + "0.8189846418", + "0.8070509401", + "0.816711666", + "0.8125581817", + "0.8184604843", + "0.8105121395", + "0.7859516038", + "0.7953645703", + "0.7891961549", + "0.8172273425", + "0.8149223949", + "0.2690771272", + "0.28290825", + "0.2956003607", + "0.1590121948", + "0.1626360937", + "0.1514229505", + "0.1480595358", + "0.128609448", + "0.0497382079", + "0.0", + "0.0769982328", + "0.0815570046", + "0.1232415107", + "0.170848391", + "0.1626731844", + "0.2227641639", + "0.1992263906", + "0.1995434166", + "0.2242804609", + "0.2187878662", + "0.2088932421", + "0.2690703185", + "0.2399791856", + "0.210182395", + "0.2289974144", + "0.2487631726", + "0.2248728629", + "0.2065762376", + "0.2350894137", + "0.2513946052", + "0.2587510054", + "0.2411491824", + "0.395806804", + "0.4019780611", + "0.4056957186", + "0.4409578102", + "0.3949694282", + "0.4206452359", + "0.3575562633", + "0.3404378252", + "0.6597636737", + "0.6707523623", + "0.6048236528", + "0.6061005292", + "0.5642836813", + "0.5807028523", + "0.5790865182", + "0.6028256476", + "0.5902501864", + "0.5680473667", + "0.7492383724", + "0.755537708", + "0.7355394026", + "0.7480678485", + "0.7465938508", + "0.714995641", + "0.7247947805", + "0.7737233305", + "0.8091474936", + "0.7839603143", + "0.7646485121", + "0.7135024369", + "0.7253010376", + "0.7249944874", + "0.7558103828", + "0.7561680786", + "0.6888855575", + "0.8266581639", + "0.8312418051", + "0.8409853811", + "0.8207469252", + "0.782442245", + "0.8518357418", + "0.8327994183", + "0.8376611065", + "0.7744492601", + "0.8061613735", + "0.8147974322", + "0.8264551864", + "0.8088906469", + "0.7955263313", + "0.7598933497", + "0.7589789773", + "0.7654456671", + "0.8412839498", + "0.8214004621", + "0.8967833605", + "0.8507938074", + "0.8051362307", + "0.8113412676", + "0.816281557", + "0.8109728983", + "0.8051712973", + "0.8326115663", + "0.8147551025", + "0.8067056089", + "0.7976926419", + "0.8196301189", + "0.8141282741", + "0.8157621661", + "0.779712075", + "0.7818685464", + "0.7549943335", + "0.838258024", + "0.8139962477", + "0.7993544341", + "0.7796230882", + "0.9153467789", + "0.9186065872", + "0.9465135685", + "0.9011493895", + "0.9052527055", + "0.919301185", + "0.9330176508", + "0.956656872", + "0.8978521803", + "0.8758660124", + "0.9044722449", + "0.8727229003", + "0.8760367256", + "0.8890039724", + "0.8693586075", + "0.8766209517", + "0.8622560988", + "0.8581676699", + "0.9399113026", + "0.9321027682", + "0.8864219587", + "0.9071889214", + "0.9038696507", + "0.9570790102", + "0.8844773645", + "0.8686885876", + "0.8863211145", + "0.8871442302", + "0.8885740924", + "0.9139950624", + "0.9259197118", + "0.984383732", + "0.9877701262", + "0.9708158037", + "0.9560479414", + "0.9368218085", + "0.9059559292", + "1.267237991", + "1.2916784675", + "1.255523189", + "1.2661737937", + "1.2434182592", + "1.2296666383", + "1.3200150238", + "1.3488592089", + "1.3499771311", + "1.2742462665", + "1.2717783912", + "1.2718451068", + "1.2656352126", + "1.2837224212", + "1.2597395654", + "1.2355917349", + "1.198388625", + "1.2065316226", + "1.184713044", + "1.2054446935", + "1.1637291232", + "1.1782166561", + "1.1798690823", + "1.1854849233", + "1.1779921079", + "1.1775267088", + "1.1747875609", + "1.1650899338", + "1.1827971561", + "1.1629435205", + "1.1653906714", + "1.161130837", + "1.175789284", + "1.1948893861", + "1.1381872674", + "1.1605880416", + "1.1686256724", + "1.1677677628", + "1.1510244174", + "1.1402465779", + "1.1403777356", + "1.1450703832", + "1.148387157", + "1.181107769", + "1.2123098575", + "1.2072378796", + "1.1311796091", + "1.1320708941", + "1.1273225824", + "1.1333718325", + "1.0544035145", + "0.9513601974", + "0.9649927104", + "1.2042198121", + "1.4120704379", + "1.165711001", + "1.2262262865", + "1.2276182355", + "1.2034816281", + "1.2111601313", + "1.2338805223", + "1.2236820544", + "1.2410911504", + "1.2422452118", + "1.2388078818", + "1.2384689234", + "1.2652533957", + "1.235210878", + "1.2388501565", + "1.242674738", + "1.2428942718", + "1.2062469074", + "1.2111232226", + "1.2321692627", + "1.2126214497", + "1.2199621968", + "1.1718736114", + "1.1643217057", + "1.1950342867", + "1.1912100397", + "1.2035591319", + "1.2084167677", + "1.2030614134", + "1.2026248432", + "1.193675972", + "1.2056923922", + "1.1833416509", + "1.1992901695", + "1.2080029086", + "1.2037176267", + "1.2119151931", + "1.2271714146", + "1.2226407621", + "1.1637350581", + "1.2014855683", + "1.1919869649", + "1.1540810362", + "1.4242563637", + "1.4568930215", + "1.4223695822", + "1.4310484357", + "1.4049388919", + "1.218729052", + "1.0719992801", + "1.0640318548", + "1.1173669659", + "1.0806390512", + "1.0856795423", + "1.0834489442", + "1.0711025235", + "1.0760451246", + "1.0292948401", + "1.0845903162", + "1.0789525649", + "1.1244379878", + "1.102533166", + "1.0948879298", + "1.0822180558", + "0.9951069205", + "0.9990245366", + "1.1071792618", + "1.0897352655", + "1.093682578", + "1.088494927", + "1.0610787942", + "1.1501541592", + "1.0977237253", + "1.0977701002", + "1.1948189701", + "1.2253659329", + "1.1807777466", + "1.187770118", + "1.1605337732", + "1.1659215714", + "1.1650886935", + "1.1572553779", + "1.099875996", + "1.2484897483", + "1.3026547158", + "1.2696776391", + "1.2588760382", + "1.2661819528", + "1.2067771142", + "1.2193779451", + "1.2264355581", + "1.2216735258", + "1.2710365673", + "1.2770234395", + "1.2864222886", + "1.2985136688", + "1.2336897088", + "1.2754784299", + "1.2736100136", + "1.2000244514", + "1.1981521804", + "1.2263479541", + "1.2194513232", + "1.2712700745", + "1.1749459633", + "1.1202753049", + "1.1380890358", + "1.10083364", + "1.1332333675", + "1.2164641283", + "1.2297064845", + "1.2446227119", + "1.2598591191", + "1.1736277146", + "1.1060167637", + "1.1663994816", + "1.2391037759", + "1.0849382707", + "1.1137968728", + "1.1199191214", + "1.1767084933", + "1.1300386114", + "1.1365522572", + "1.1413346032", + "1.1225832425", + "1.1488297894", + "1.2161074914", + "1.2226616556", + "1.2504471706", + "1.2634501608", + "1.2600704608", + "1.1387073804", + "1.1657516875", + "1.129040732", + "1.1344579505", + "1.1864425624", + "1.2187557837", + "1.2106911621", + "1.2191066255", + "1.2062012828", + "1.1933081968", + "1.1978546848", + "1.2514799767", + "1.3068657981", + "1.4036231193", + "1.3167475372", + "1.3161172323", + "1.343942984", + "1.2813306243", + "1.3481767436", + "1.3432228171", + "1.3081977164", + "1.3174611821", + "1.212747301", + "1.5043043663", + "1.4304590576", + "1.439648078", + "1.3671577057", + "1.3794485473", + "1.3690634478", + "1.4712670569", + "1.3984986947", + "1.4366863096", + "1.4307691838", + "1.4086536658", + "1.3378808793", + "1.3406257228", + "1.3852842729", + "1.3790450313", + "1.3836338319", + "1.3490322441", + "1.3406132196", + "1.3325763782", + "1.3922254997", + "1.3510541438", + "1.3587228462", + "1.329243675", + "1.2819905947", + "1.385553247", + "1.3236373581", + "1.3167707134", + "1.3369989453", + "1.4131432029", + "1.4254147615", + "1.4340036247", + "1.4291158561", + "1.4229111297", + "1.4127513349", + "1.4117694461", + "1.4051163642", + "1.5233112417", + "1.5041945168", + "1.3781296367", + "1.4274149797", + "1.4273422978", + "1.4209830694", + "1.4234958399", + "1.48957834", + "1.4841283176", + "1.4390067782", + "1.4249714346", + "1.4223185325", + "1.4108224485", + "1.4295558422", + "1.398032218", + "1.3889880677", + "1.3848265078", + "1.4003872017", + "1.3958575126", + "1.3867555649", + "1.3933254793", + "1.4080007931", + "1.4227513656", + "1.4316857324", + "1.4581504201", + "1.4096810276", + "1.4336927953", + "1.4446178189", + "1.3883061735", + "1.4426259126", + "1.4175580603", + "1.3934954712", + "1.3929967004", + "1.4006900175", + "1.3946549078", + "1.3677869847", + "1.3757320428", + "1.3788742522", + "1.3501545367" + ] + }, + "essential_compounds": [ + "12dgr180", + "12ppd_S", + "26dap_M", + "2dmmq8", + "2obut", + "34dhphe", + "4abz", + "4hbz", + "5htrp", + "C02528", + "ac", + "acald", + "ade", + "adn", + "adocbl", + "amp", + "arab_L", + "arabttr", + "arg_L", + "asn_L", + "asp_L", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cholate", + "chor", + "cl", + "co2", + "cobalt2", + "csn", + "cu2", + "cytd", + "dad_2", + "dcyt", + "dgchol", + "dgsn", + "din", + "dopa", + "duri", + "fe2", + "fe3", + "for", + "fru", + "fuc_L", + "gal", + "galur", + "gcald", + "gchola", + "glc_D", + "glcn", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyc", + "glyclt", + "gsn", + "gua", + "h2", + "h2o", + "h2s", + "h", + "hg2", + "hista", + "hxan", + "indole", + "ins", + "k", + "lac_D", + "lcts", + "lys_L", + "malt", + "man", + "mantr", + "melib", + "met_L", + "mg2", + "mn2", + "mqn8", + "n2", + "na1", + "nac", + "ncam", + "nh4", + "no2", + "o2", + "ocdcea", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "ppa", + "ppi", + "pro_L", + "pydam", + "pydx", + "pydxn", + "q8", + "raffin", + "rib_D", + "rmn", + "salcn", + "ser_L", + "sheme", + "so4", + "spmd", + "srtn", + "strch1", + "strch2", + "stys", + "succ", + "sucr", + "taur", + "tchola", + "tdchola", + "thm", + "thr_L", + "thymd", + "tre", + "trp_L", + "trypta", + "tsul", + "tym", + "ura", + "uri", + "val_L", + "xyl_D", + "xyluglc", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_402.json b/agents/agora/agent_402.json new file mode 100644 index 0000000000000000000000000000000000000000..449c8d1df5324c9d1b80ca08a1bc08911d08cca0 --- /dev/null +++ b/agents/agora/agent_402.json @@ -0,0 +1,988 @@ +{ + "id": 402, + "name": "Exiguobacterium_aurantiacum_DSM_6208", + "N_R": 1227, + "taxonomy": { + "k": 402, + "tax_distance": [ + "2.5148462526", + "2.0969683853", + "2.0902691562", + "2.3168518633", + "1.9982517894", + "2.0433804763", + "2.0246751785", + "2.0217325842", + "2.0857141825", + "2.0040700906", + "2.021134794", + "2.1292571078", + "2.1022748861", + "2.330288844", + "2.3786456611", + "2.4089781717", + "2.2893277738", + "2.2982518906", + "2.3337263662", + "1.8667106822", + "1.8020397055", + "1.5515184468", + "1.4848680144", + "1.3633883377", + "1.1892090589", + "1.1833978508", + "1.1800432794", + "1.1824043338", + "1.1666380438", + "1.1579522809", + "1.160403187", + "1.2619891231", + "1.2715269259", + "1.2678930159", + "1.2835890845", + "1.2520875045", + "1.2748334486", + "1.2931393601", + "1.2741073971", + "1.5670480561", + "1.3118896774", + "1.2305286214", + "1.2372939276", + "1.2399015077", + "1.2366697657", + "1.2396431474", + "1.2347445425", + "1.2351295778", + "1.229314667", + "1.2213534774", + "1.1629312994", + "1.1684436994", + "1.1627028661", + "1.1348565955", + "1.1413783396", + "1.1704803368", + "1.14440345", + "1.1423874224", + "1.163141828", + "1.1608019333", + "1.1440601058", + "1.1694108774", + "1.1714856672", + "1.170154774", + "1.1845459915", + "1.1862681534", + "1.1862681534", + "1.1929137361", + "1.1929137361", + "1.1929137361", + "1.1929137361", + "1.1929137361", + "1.1929137361", + "1.1929137361", + "1.1929137361", + "1.1888343734", + "1.1891801106", + "1.182748403", + "1.1932408776", + "1.1923356357", + "1.1884374661", + "1.1866947925", + "1.1880133623", + "1.1845114818", + "1.1794337335", + "1.1827788591", + "1.1882246259", + "1.1836864342", + "1.1686864781", + "1.177057593", + "1.1717822078", + "1.1879301488", + "1.1832328596", + "1.1873664289", + "1.1653267183", + "1.1599265345", + "1.1739928896", + "1.1846532986", + "1.2014503416", + "1.1838600514", + "1.1738649329", + "1.1725471153", + "1.1532967354", + "1.1661752244", + "1.2250476694", + "1.2198957577", + "1.286792015", + "1.252952759", + "1.1901441182", + "1.193870375", + "1.1966038421", + "1.1894997606", + "1.1894997606", + "1.1708758584", + "1.1737800047", + "1.165679488", + "1.2012051867", + "1.1379826372", + "1.1158917238", + "1.1337560801", + "1.1204850848", + "1.1209106772", + "1.2391623908", + "1.2463528416", + "1.2677938545", + "1.0723901388", + "1.2421390921", + "1.2488143262", + "1.2334512339", + "1.2530852391", + "1.2422723251", + "1.2473388114", + "1.2388425338", + "1.2318924287", + "1.2227627316", + "1.223420852", + "1.2423347752", + "1.2154533313", + "1.1974891208", + "1.2913770617", + "1.2927509354", + "1.2620625231", + "1.3196422137", + "1.2572208012", + "1.262714744", + "1.2597537189", + "1.284460704", + "1.2736382552", + "1.1817951832", + "1.1528850937", + "1.1140740337", + "1.0919727405", + "1.0833309342", + "1.0782107431", + "1.1150823688", + "1.1175774947", + "1.0893894258", + "1.0777514719", + "1.0813379809", + "1.1502910917", + "1.1569994738", + "1.1266285272", + "1.2505466004", + "1.245031705", + "1.2473727562", + "1.20509583", + "1.2012418505", + "1.2391484242", + "1.2309716099", + "1.1997295874", + "1.2012889461", + "1.2193089398", + "1.1760041451", + "1.1651680161", + "1.1663285686", + "1.19981491", + "1.1879913573", + "1.1693645001", + "1.1883531224", + "1.1696851237", + "1.1835000659", + "1.1777174949", + "1.1766491129", + "1.1972075646", + "1.1929950172", + "1.1758759718", + "1.2101043458", + "1.1948701041", + "1.1999824131", + "1.1993757276", + "1.1637740972", + "1.159753889", + "1.1442865374", + "1.1626330426", + "1.1595666678", + "1.133875074", + "1.1168623261", + "1.1115546752", + "1.1162964598", + "1.1154378491", + "1.148203809", + "1.1472231472", + "1.1712629448", + "1.1491539178", + "1.1096459258", + "1.1128103366", + "1.1378722286", + "1.1341633445", + "1.1099127278", + "1.1024553779", + "1.1048086372", + "1.1139861721", + "1.0397520752", + "1.082355176", + "1.0666514053", + "1.0604896421", + "1.0542093973", + "1.0421067797", + "1.0452771191", + "1.0874492085", + "1.5218410397", + "1.6066192388", + "1.5191546637", + "1.5043369516", + "1.4826643188", + "1.0363419777", + "1.0551463837", + "1.1050792488", + "1.0667184968", + "1.0819556998", + "1.1954928374", + "1.1492634445", + "1.1709151187", + "1.1295817726", + "1.0429200841", + "1.055302427", + "1.0617934982", + "1.122220035", + "1.1134205024", + "1.1115017714", + "1.1375040525", + "1.1348116169", + "1.1260435613", + "1.1575641849", + "1.1656476494", + "1.1498363762", + "1.1232181264", + "1.1178725533", + "1.1232832292", + "1.111990088", + "1.0569591932", + "1.0620440151", + "1.0612887916", + "1.1081003761", + "1.0635300967", + "1.0459818983", + "1.1234067045", + "1.0766740647", + "1.0517566022", + "1.0647920934", + "1.0354075798", + "1.0006212216", + "1.0847092574", + "1.0870630438", + "1.0918402535", + "1.0971858515", + "1.0628848257", + "1.123540575", + "1.1303766904", + "1.1268876879", + "1.1395527533", + "1.1256367105", + "1.1054208043", + "1.0968200356", + "1.1434719038", + "1.1627501765", + "1.2134291964", + "1.0563515802", + "1.0255242861", + "1.11853", + "1.1175133001", + "1.1047342244", + "1.0616589373", + "1.1264822515", + "1.1174254993", + "1.1200777616", + "1.1512170669", + "1.0928759337", + "1.0781422309", + "1.0597671026", + "1.0880827413", + "1.059589816", + "1.1147357333", + "1.1457291333", + "1.1683619811", + "1.1250458041", + "1.0963920156", + "1.1166389123", + "1.0963925239", + "1.082778549", + "1.0475234781", + "1.0824730376", + "1.0135625617", + "1.0308279327", + "1.1136366437", + "1.1020019829", + "1.0991035566", + "1.1092578638", + "1.1176207493", + "1.1069433881", + "1.1188839557", + "1.1073504982", + "1.1048889916", + "1.07329986", + "1.0792947658", + "1.085552763", + "1.0727072176", + "1.1062458545", + "1.0384750662", + "1.0969730065", + "1.0941177739", + "1.0843583064", + "1.08358343", + "1.1097255548", + "1.086334318", + "1.05602818", + "0.9707000806", + "0.9825046254", + "0.9835219013", + "0.9275451241", + "0.9396720446", + "0.9363836426", + "0.9177094435", + "0.9263913952", + "0.9223506083", + "0.9123874585", + "0.9381884851", + "0.9348771484", + "0.8982478701", + "0.9167863028", + "0.8745450438", + "0.8772239826", + "0.8912143979", + "0.8927155076", + "0.8793856625", + "0.8688642684", + "0.8956187007", + "0.8815417536", + "0.8415354565", + "0.8488989921", + "1.0184665556", + "0.8388000468", + "0.8433444011", + "0.846948175", + "0.8428955668", + "0.8100135401", + "0.8398222149", + "0.8598814571", + "0.8618741808", + "0.8599565814", + "0.8432734924", + "0.8421135628", + "0.807877153", + "0.8101529545", + "0.936036348", + "0.9472307041", + "0.8335174798", + "0.8391748916", + "0.8292462", + "0.7933780194", + "0.8189864163", + "0.8097213018", + "0.801856554", + "0.8010026236", + "0.8085271795", + "0.8025197057", + "0.8215886246", + "0.8155123078", + "0.8272346586", + "0.8220018828", + "0.8087856336", + "0.7968519319", + "0.8065126578", + "0.8023591735", + "0.8082614761", + "0.8003131313", + "0.7757525956", + "0.7851655621", + "0.7789971467", + "0.8070283343", + "0.8047233867", + "0.258878119", + "0.2727092418", + "0.2854013525", + "0.1488131866", + "0.1524370855", + "0.1412239423", + "0.1378605276", + "0.1184104398", + "0.0600811739", + "0.0769982328", + "0.0", + "0.047935361", + "0.1130425025", + "0.1606493828", + "0.1524741762", + "0.2125651557", + "0.1890273824", + "0.1893444084", + "0.2140814527", + "0.208588858", + "0.1986942339", + "0.2588713103", + "0.2297801774", + "0.1999833868", + "0.2187984062", + "0.2385641644", + "0.2146738547", + "0.1963772294", + "0.2248904055", + "0.241195597", + "0.2485519972", + "0.2309501742", + "0.3856077958", + "0.3917790529", + "0.3954967104", + "0.430758802", + "0.38477042", + "0.4104462277", + "0.3473572551", + "0.330238817", + "0.6495646655", + "0.6605533541", + "0.5946246446", + "0.595901521", + "0.5540846731", + "0.5705038441", + "0.56888751", + "0.5926266394", + "0.5800511782", + "0.5578483585", + "0.7390393642", + "0.7453386998", + "0.7253403944", + "0.7378688403", + "0.7363948426", + "0.7047966328", + "0.7145957723", + "0.7635243223", + "0.7989484854", + "0.7737613061", + "0.7544495039", + "0.7033034287", + "0.7151020294", + "0.7147954792", + "0.7456113746", + "0.7459690704", + "0.6786865493", + "0.8164591557", + "0.8210427969", + "0.8307863729", + "0.810547917", + "0.7722432368", + "0.8416367336", + "0.8226004101", + "0.8274620983", + "0.7642502519", + "0.7959623653", + "0.804598424", + "0.8162561782", + "0.7986916387", + "0.7853273231", + "0.7496943415", + "0.7487799691", + "0.7552466589", + "0.8310849416", + "0.8112014539", + "0.8865843523", + "0.8405947992", + "0.7949372225", + "0.8011422594", + "0.8060825488", + "0.8007738901", + "0.7949722891", + "0.8224125581", + "0.8045560943", + "0.7965066007", + "0.7874936337", + "0.8094311107", + "0.8039292659", + "0.8055631579", + "0.7695130668", + "0.7716695382", + "0.7447953253", + "0.8280590158", + "0.8037972395", + "0.7891554259", + "0.76942408", + "0.9051477707", + "0.908407579", + "0.9363145603", + "0.8909503813", + "0.8950536973", + "0.9091021768", + "0.9228186426", + "0.9464578638", + "0.8876531721", + "0.8656670042", + "0.8942732367", + "0.8625238921", + "0.8658377174", + "0.8788049642", + "0.8591595993", + "0.8664219435", + "0.8520570906", + "0.8479686617", + "0.9297122944", + "0.92190376", + "0.8762229505", + "0.8969899132", + "0.8936706425", + "0.946880002", + "0.8742783563", + "0.8584895794", + "0.8761221063", + "0.876945222", + "0.8783750842", + "0.9037960542", + "0.9157207036", + "0.9741847238", + "0.977571118", + "0.9606167955", + "0.9458489332", + "0.9266228003", + "0.895756921", + "1.2570389828", + "1.2814794593", + "1.2453241808", + "1.2559747855", + "1.233219251", + "1.2194676301", + "1.3098160156", + "1.3386602007", + "1.3397781229", + "1.2640472583", + "1.261579383", + "1.2616460986", + "1.2554362044", + "1.273523413", + "1.2495405572", + "1.2253927267", + "1.1881896168", + "1.1963326144", + "1.1745140358", + "1.1952456853", + "1.153530115", + "1.1680176479", + "1.1696700741", + "1.1752859151", + "1.1677930997", + "1.1673277006", + "1.1645885527", + "1.1548909256", + "1.1725981479", + "1.1527445123", + "1.1551916632", + "1.1509318288", + "1.1655902758", + "1.1846903779", + "1.1279882592", + "1.1503890334", + "1.1584266642", + "1.1575687546", + "1.1408254092", + "1.1300475697", + "1.1301787274", + "1.134871375", + "1.1381881488", + "1.1709087608", + "1.2021108493", + "1.1970388714", + "1.1209806009", + "1.1218718859", + "1.1171235742", + "1.1231728243", + "1.0442045063", + "0.9411611892", + "0.9547937022", + "1.1940208039", + "1.4018714297", + "1.1555119928", + "1.2160272783", + "1.2174192273", + "1.1932826199", + "1.2009611231", + "1.2236815141", + "1.2134830462", + "1.2308921422", + "1.2320462036", + "1.2286088736", + "1.2282699152", + "1.2550543875", + "1.2250118698", + "1.2286511483", + "1.2324757298", + "1.2326952636", + "1.1960478992", + "1.2009242144", + "1.2219702545", + "1.2024224415", + "1.2097631886", + "1.1616746032", + "1.1541226975", + "1.1848352785", + "1.1810110315", + "1.1933601237", + "1.1982177595", + "1.1928624052", + "1.192425835", + "1.1834769638", + "1.195493384", + "1.1731426427", + "1.1890911613", + "1.1978039004", + "1.1935186185", + "1.2017161849", + "1.2169724064", + "1.2124417539", + "1.1535360499", + "1.1912865601", + "1.1817879567", + "1.143882028", + "1.4140573555", + "1.4466940133", + "1.412170574", + "1.4208494275", + "1.3947398837", + "1.2085300438", + "1.0618002719", + "1.0538328466", + "1.1071679577", + "1.070440043", + "1.0754805341", + "1.073249936", + "1.0609035153", + "1.0658461164", + "1.0190958319", + "1.074391308", + "1.0687535567", + "1.1142389796", + "1.0923341578", + "1.0846889216", + "1.0720190476", + "0.9849079123", + "0.9888255284", + "1.0969802536", + "1.0795362573", + "1.0834835698", + "1.0782959188", + "1.050879786", + "1.139955151", + "1.0875247171", + "1.087571092", + "1.1846199619", + "1.2151669247", + "1.1705787384", + "1.1775711098", + "1.150334765", + "1.1557225632", + "1.1548896853", + "1.1470563697", + "1.0896769878", + "1.2382907401", + "1.2924557076", + "1.2594786309", + "1.24867703", + "1.2559829446", + "1.196578106", + "1.2091789369", + "1.2162365499", + "1.2114745176", + "1.2608375591", + "1.2668244313", + "1.2762232804", + "1.2883146606", + "1.2234907006", + "1.2652794217", + "1.2634110054", + "1.1898254432", + "1.1879531722", + "1.2161489459", + "1.209252315", + "1.2610710663", + "1.1647469551", + "1.1100762967", + "1.1278900276", + "1.0906346318", + "1.1230343593", + "1.2062651201", + "1.2195074763", + "1.2344237037", + "1.2496601109", + "1.1634287064", + "1.0958177555", + "1.1562004734", + "1.2289047677", + "1.0747392625", + "1.1035978646", + "1.1097201132", + "1.1665094851", + "1.1198396032", + "1.126353249", + "1.131135595", + "1.1123842343", + "1.1386307812", + "1.2059084832", + "1.2124626474", + "1.2402481624", + "1.2532511526", + "1.2498714526", + "1.1285083722", + "1.1555526793", + "1.1188417238", + "1.1242589423", + "1.1762435542", + "1.2085567755", + "1.2004921539", + "1.2089076173", + "1.1960022746", + "1.1831091886", + "1.1876556766", + "1.2412809685", + "1.2966667899", + "1.3934241111", + "1.306548529", + "1.3059182241", + "1.3337439758", + "1.2711316161", + "1.3379777354", + "1.3330238089", + "1.2979987082", + "1.3072621739", + "1.2025482928", + "1.4941053581", + "1.4202600494", + "1.4294490698", + "1.3569586975", + "1.3692495391", + "1.3588644396", + "1.4610680487", + "1.3882996865", + "1.4264873014", + "1.4205701756", + "1.3984546576", + "1.3276818711", + "1.3304267146", + "1.3750852647", + "1.3688460231", + "1.3734348237", + "1.3388332359", + "1.3304142114", + "1.32237737", + "1.3820264915", + "1.3408551356", + "1.348523838", + "1.3190446668", + "1.2717915865", + "1.3753542388", + "1.3134383499", + "1.3065717052", + "1.3267999371", + "1.4029441947", + "1.4152157533", + "1.4238046165", + "1.4189168479", + "1.4127121215", + "1.4025523267", + "1.4015704379", + "1.394917356", + "1.5131122335", + "1.4939955086", + "1.3679306285", + "1.4172159715", + "1.4171432896", + "1.4107840612", + "1.4132968317", + "1.4793793318", + "1.4739293094", + "1.42880777", + "1.4147724264", + "1.4121195243", + "1.4006234403", + "1.419356834", + "1.3878332098", + "1.3787890595", + "1.3746274996", + "1.3901881935", + "1.3856585044", + "1.3765565567", + "1.3831264711", + "1.3978017849", + "1.4125523574", + "1.4214867242", + "1.4479514119", + "1.3994820194", + "1.4234937871", + "1.4344188107", + "1.3781071653", + "1.4324269044", + "1.4073590521", + "1.383296463", + "1.3827976922", + "1.3904910093", + "1.3844558996", + "1.3575879765", + "1.3655330346", + "1.368675244", + "1.3399555285" + ] + }, + "essential_compounds": [ + "15dap", + "34dhpha", + "4abut", + "4hbz", + "ac", + "acac", + "acald", + "acgam", + "adn", + "adocbl", + "akg", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_L", + "arg_L", + "asn_L", + "asp_L", + "btn", + "but", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "ddca", + "dgsn", + "din", + "dms", + "dmso", + "drib", + "duri", + "etoh", + "fe2", + "fe3", + "for", + "fru", + "fum", + "gal", + "galct_D", + "galur", + "gbbtn", + "gcald", + "glc_D", + "glcr", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gsn", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hg2", + "his_L", + "hxan", + "ile_L", + "indole", + "ins", + "k", + "lac_D", + "lac_L", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man", + "mantr", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "na1", + "nac", + "ncam", + "nh4", + "ni2", + "nmn", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "oxa", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppi", + "pppn", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "rib_D", + "ser_D", + "ser_L", + "so3", + "so4", + "spmd", + "succ", + "tet", + "thm", + "thr_L", + "thymd", + "tma", + "tmao", + "trp_L", + "tsul", + "ttdca", + "tyr_L", + "ura", + "urea", + "uri", + "val_L", + "xan", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_403.json b/agents/agora/agent_403.json new file mode 100644 index 0000000000000000000000000000000000000000..57ccb81cf61d83c22744624ae707ea248b414ea6 --- /dev/null +++ b/agents/agora/agent_403.json @@ -0,0 +1,990 @@ +{ + "id": 403, + "name": "Faecalibacterium_cf_prausnitzii_KLE1255", + "N_R": 1276, + "taxonomy": { + "k": 403, + "tax_distance": [ + "2.5194050244", + "2.1015271571", + "2.094827928", + "2.3214106351", + "2.0028105612", + "2.0479392481", + "2.0292339503", + "2.026291356", + "2.0902729543", + "2.0086288624", + "2.0256935658", + "2.1338158796", + "2.1068336579", + "2.3348476158", + "2.3832044329", + "2.4135369435", + "2.2938865456", + "2.3028106624", + "2.338285138", + "1.871269454", + "1.8065984773", + "1.5560772186", + "1.4894267862", + "1.3679471095", + "1.1937678307", + "1.1879566226", + "1.1846020512", + "1.1869631056", + "1.1711968156", + "1.1625110527", + "1.1649619588", + "1.2665478949", + "1.2760856977", + "1.2724517877", + "1.2881478563", + "1.2566462763", + "1.2793922204", + "1.2976981319", + "1.2786661689", + "1.5716068279", + "1.3164484492", + "1.2350873932", + "1.2418526994", + "1.2444602795", + "1.2412285375", + "1.2442019192", + "1.2393033143", + "1.2396883496", + "1.2338734388", + "1.2259122492", + "1.1674900712", + "1.1730024712", + "1.1672616379", + "1.1394153673", + "1.1459371114", + "1.1750391086", + "1.1489622218", + "1.1469461942", + "1.1677005998", + "1.1653607051", + "1.1486188776", + "1.1739696492", + "1.176044439", + "1.1747135458", + "1.1891047633", + "1.1908269252", + "1.1908269252", + "1.1974725079", + "1.1974725079", + "1.1974725079", + "1.1974725079", + "1.1974725079", + "1.1974725079", + "1.1974725079", + "1.1974725079", + "1.1933931452", + "1.1937388824", + "1.1873071748", + "1.1977996494", + "1.1968944075", + "1.1929962379", + "1.1912535643", + "1.1925721341", + "1.1890702536", + "1.1839925053", + "1.1873376309", + "1.1927833977", + "1.188245206", + "1.1732452499", + "1.1816163648", + "1.1763409796", + "1.1924889206", + "1.1877916314", + "1.1919252007", + "1.1698854901", + "1.1644853063", + "1.1785516614", + "1.1892120704", + "1.2060091134", + "1.1884188232", + "1.1784237047", + "1.1771058871", + "1.1578555072", + "1.1707339962", + "1.2296064412", + "1.2244545295", + "1.2913507868", + "1.2575115308", + "1.19470289", + "1.1984291468", + "1.2011626139", + "1.1940585324", + "1.1940585324", + "1.1754346302", + "1.1783387765", + "1.1702382598", + "1.2057639585", + "1.142541409", + "1.1204504956", + "1.1383148519", + "1.1250438566", + "1.125469449", + "1.2437211626", + "1.2509116134", + "1.2723526263", + "1.0769489106", + "1.2466978639", + "1.253373098", + "1.2380100057", + "1.2576440109", + "1.2468310969", + "1.2518975832", + "1.2434013056", + "1.2364512005", + "1.2273215034", + "1.2279796238", + "1.246893547", + "1.2200121031", + "1.2020478926", + "1.2959358335", + "1.2973097072", + "1.2666212949", + "1.3242009855", + "1.261779573", + "1.2672735158", + "1.2643124907", + "1.2890194758", + "1.278197027", + "1.186353955", + "1.1574438655", + "1.1186328055", + "1.0965315123", + "1.087889706", + "1.0827695149", + "1.1196411406", + "1.1221362665", + "1.0939481976", + "1.0823102437", + "1.0858967527", + "1.1548498635", + "1.1615582456", + "1.131187299", + "1.2551053722", + "1.2495904768", + "1.251931528", + "1.2096546018", + "1.2058006223", + "1.243707196", + "1.2355303817", + "1.2042883592", + "1.2058477179", + "1.2238677116", + "1.1805629169", + "1.1697267879", + "1.1708873404", + "1.2043736818", + "1.1925501291", + "1.1739232719", + "1.1929118942", + "1.1742438955", + "1.1880588377", + "1.1822762667", + "1.1812078847", + "1.2017663364", + "1.197553789", + "1.1804347436", + "1.2146631176", + "1.1994288759", + "1.2045411849", + "1.2039344994", + "1.168332869", + "1.1643126608", + "1.1488453092", + "1.1671918144", + "1.1641254396", + "1.1384338458", + "1.1214210979", + "1.116113447", + "1.1208552316", + "1.1199966209", + "1.1527625808", + "1.151781919", + "1.1758217166", + "1.1537126896", + "1.1142046976", + "1.1173691084", + "1.1424310004", + "1.1387221163", + "1.1144714996", + "1.1070141497", + "1.109367409", + "1.1185449439", + "1.044310847", + "1.0869139478", + "1.0712101771", + "1.0650484139", + "1.0587681691", + "1.0466655515", + "1.0498358909", + "1.0920079803", + "1.5263998115", + "1.6111780106", + "1.5237134355", + "1.5088957234", + "1.4872230906", + "1.0409007495", + "1.0597051555", + "1.1096380206", + "1.0712772686", + "1.0865144716", + "1.2000516092", + "1.1538222163", + "1.1754738905", + "1.1341405444", + "1.0474788559", + "1.0598611988", + "1.06635227", + "1.1267788068", + "1.1179792742", + "1.1160605432", + "1.1420628243", + "1.1393703887", + "1.1306023331", + "1.1621229567", + "1.1702064212", + "1.154395148", + "1.1277768982", + "1.1224313251", + "1.127842001", + "1.1165488598", + "1.061517965", + "1.0666027869", + "1.0658475634", + "1.1126591479", + "1.0680888685", + "1.0505406701", + "1.1279654763", + "1.0812328365", + "1.056315374", + "1.0693508652", + "1.0399663516", + "1.0051799934", + "1.0892680292", + "1.0916218156", + "1.0963990253", + "1.1017446233", + "1.0674435975", + "1.1280993468", + "1.1349354622", + "1.1314464597", + "1.1441115251", + "1.1301954823", + "1.1099795761", + "1.1013788074", + "1.1480306756", + "1.1673089483", + "1.2179879682", + "1.060910352", + "1.0300830579", + "1.1230887718", + "1.1220720719", + "1.1092929962", + "1.0662177091", + "1.1310410233", + "1.1219842711", + "1.1246365334", + "1.1557758387", + "1.0974347055", + "1.0827010027", + "1.0643258744", + "1.0926415131", + "1.0641485878", + "1.1192945051", + "1.1502879051", + "1.1729207529", + "1.1296045759", + "1.1009507874", + "1.1211976841", + "1.1009512957", + "1.0873373208", + "1.0520822499", + "1.0870318094", + "1.0181213335", + "1.0353867045", + "1.1181954155", + "1.1065607547", + "1.1036623284", + "1.1138166356", + "1.1221795211", + "1.1115021599", + "1.1234427275", + "1.11190927", + "1.1094477634", + "1.0778586318", + "1.0838535376", + "1.0901115348", + "1.0772659894", + "1.1108046263", + "1.043033838", + "1.1015317783", + "1.0986765457", + "1.0889170782", + "1.0881422018", + "1.1142843266", + "1.0908930898", + "1.0605869518", + "0.9752588524", + "0.9870633972", + "0.9880806731", + "0.9321038959", + "0.9442308164", + "0.9409424144", + "0.9222682153", + "0.930950167", + "0.9269093801", + "0.9169462303", + "0.9427472569", + "0.9394359202", + "0.9028066419", + "0.9213450746", + "0.8791038156", + "0.8817827544", + "0.8957731697", + "0.8972742794", + "0.8839444343", + "0.8734230402", + "0.9001774725", + "0.8861005254", + "0.8460942283", + "0.8534577639", + "1.0230253274", + "0.8433588186", + "0.8479031729", + "0.8515069468", + "0.8474543386", + "0.8145723119", + "0.8443809867", + "0.8644402289", + "0.8664329526", + "0.8645153532", + "0.8478322642", + "0.8466723346", + "0.8124359248", + "0.8147117263", + "0.9405951198", + "0.9517894759", + "0.8380762516", + "0.8437336634", + "0.8338049718", + "0.7979367912", + "0.8235451881", + "0.8142800736", + "0.8064153258", + "0.8055613954", + "0.8130859513", + "0.8070784775", + "0.8261473964", + "0.8200710796", + "0.8317934304", + "0.8265606546", + "0.8133444054", + "0.8014107037", + "0.8110714296", + "0.8069179453", + "0.8128202479", + "0.8048719031", + "0.7803113674", + "0.7897243339", + "0.7835559185", + "0.8115871061", + "0.8092821585", + "0.2634368908", + "0.2772680136", + "0.2899601243", + "0.1533719584", + "0.1569958573", + "0.1457827141", + "0.1424192994", + "0.1229692116", + "0.0646399457", + "0.0815570046", + "0.047935361", + "0.0", + "0.1176012743", + "0.1652081546", + "0.157032948", + "0.2171239275", + "0.1935861542", + "0.1939031802", + "0.2186402245", + "0.2131476298", + "0.2032530057", + "0.2634300821", + "0.2343389492", + "0.2045421586", + "0.223357178", + "0.2431229362", + "0.2192326265", + "0.2009360012", + "0.2294491773", + "0.2457543688", + "0.253110769", + "0.235508946", + "0.3901665676", + "0.3963378247", + "0.4000554822", + "0.4353175738", + "0.3893291918", + "0.4150049995", + "0.3519160269", + "0.3347975888", + "0.6541234373", + "0.6651121259", + "0.5991834164", + "0.6004602928", + "0.5586434449", + "0.5750626159", + "0.5734462818", + "0.5971854112", + "0.58460995", + "0.5624071303", + "0.743598136", + "0.7498974716", + "0.7298991662", + "0.7424276121", + "0.7409536144", + "0.7093554046", + "0.7191545441", + "0.7680830941", + "0.8035072572", + "0.7783200779", + "0.7590082757", + "0.7078622005", + "0.7196608012", + "0.719354251", + "0.7501701464", + "0.7505278422", + "0.6832453211", + "0.8210179275", + "0.8256015687", + "0.8353451447", + "0.8151066888", + "0.7768020086", + "0.8461955054", + "0.8271591819", + "0.8320208701", + "0.7688090237", + "0.8005211371", + "0.8091571958", + "0.82081495", + "0.8032504105", + "0.7898860949", + "0.7542531133", + "0.7533387409", + "0.7598054307", + "0.8356437134", + "0.8157602257", + "0.8911431241", + "0.845153571", + "0.7994959943", + "0.8057010312", + "0.8106413206", + "0.8053326619", + "0.7995310609", + "0.8269713299", + "0.8091148661", + "0.8010653725", + "0.7920524055", + "0.8139898825", + "0.8084880377", + "0.8101219297", + "0.7740718386", + "0.77622831", + "0.7493540971", + "0.8326177876", + "0.8083560113", + "0.7937141977", + "0.7739828518", + "0.9097065425", + "0.9129663508", + "0.9408733321", + "0.8955091531", + "0.8996124691", + "0.9136609486", + "0.9273774144", + "0.9510166356", + "0.8922119439", + "0.870225776", + "0.8988320085", + "0.8670826639", + "0.8703964892", + "0.883363736", + "0.8637183711", + "0.8709807153", + "0.8566158624", + "0.8525274335", + "0.9342710662", + "0.9264625318", + "0.8807817223", + "0.901548685", + "0.8982294143", + "0.9514387738", + "0.8788371281", + "0.8630483512", + "0.8806808781", + "0.8815039938", + "0.882933856", + "0.908354826", + "0.9202794754", + "0.9787434956", + "0.9821298898", + "0.9651755673", + "0.950407705", + "0.9311815721", + "0.9003156928", + "1.2615977546", + "1.2860382311", + "1.2498829526", + "1.2605335573", + "1.2377780228", + "1.2240264019", + "1.3143747874", + "1.3432189725", + "1.3443368947", + "1.2686060301", + "1.2661381548", + "1.2662048704", + "1.2599949762", + "1.2780821848", + "1.254099329", + "1.2299514985", + "1.1927483886", + "1.2008913862", + "1.1790728076", + "1.1998044571", + "1.1580888868", + "1.1725764197", + "1.1742288459", + "1.1798446869", + "1.1723518715", + "1.1718864724", + "1.1691473245", + "1.1594496974", + "1.1771569197", + "1.1573032841", + "1.159750435", + "1.1554906006", + "1.1701490476", + "1.1892491497", + "1.132547031", + "1.1549478052", + "1.162985436", + "1.1621275264", + "1.145384181", + "1.1346063415", + "1.1347374992", + "1.1394301468", + "1.1427469206", + "1.1754675326", + "1.2066696211", + "1.2015976432", + "1.1255393727", + "1.1264306577", + "1.121682346", + "1.1277315961", + "1.0487632781", + "0.945719961", + "0.959352474", + "1.1985795757", + "1.4064302015", + "1.1600707646", + "1.2205860501", + "1.2219779991", + "1.1978413917", + "1.2055198949", + "1.2282402859", + "1.218041818", + "1.235450914", + "1.2366049754", + "1.2331676454", + "1.232828687", + "1.2596131593", + "1.2295706416", + "1.2332099201", + "1.2370345016", + "1.2372540354", + "1.200606671", + "1.2054829862", + "1.2265290263", + "1.2069812133", + "1.2143219604", + "1.166233375", + "1.1586814693", + "1.1893940503", + "1.1855698033", + "1.1979188955", + "1.2027765313", + "1.197421177", + "1.1969846068", + "1.1880357356", + "1.2000521558", + "1.1777014145", + "1.1936499331", + "1.2023626722", + "1.1980773903", + "1.2062749567", + "1.2215311782", + "1.2170005257", + "1.1580948217", + "1.1958453319", + "1.1863467285", + "1.1484407998", + "1.4186161273", + "1.4512527851", + "1.4167293458", + "1.4254081993", + "1.3992986555", + "1.2130888156", + "1.0663590437", + "1.0583916184", + "1.1117267295", + "1.0749988148", + "1.0800393059", + "1.0778087078", + "1.0654622871", + "1.0704048882", + "1.0236546037", + "1.0789500798", + "1.0733123285", + "1.1187977514", + "1.0968929296", + "1.0892476934", + "1.0765778194", + "0.9894666841", + "0.9933843002", + "1.1015390254", + "1.0840950291", + "1.0880423416", + "1.0828546906", + "1.0554385578", + "1.1445139228", + "1.0920834889", + "1.0921298638", + "1.1891787337", + "1.2197256965", + "1.1751375102", + "1.1821298816", + "1.1548935368", + "1.160281335", + "1.1594484571", + "1.1516151415", + "1.0942357596", + "1.2428495119", + "1.2970144794", + "1.2640374027", + "1.2532358018", + "1.2605417164", + "1.2011368778", + "1.2137377087", + "1.2207953217", + "1.2160332894", + "1.2653963309", + "1.2713832031", + "1.2807820522", + "1.2928734324", + "1.2280494724", + "1.2698381935", + "1.2679697772", + "1.194384215", + "1.192511944", + "1.2207077177", + "1.2138110868", + "1.2656298381", + "1.1693057269", + "1.1146350685", + "1.1324487994", + "1.0951934036", + "1.1275931311", + "1.2108238919", + "1.2240662481", + "1.2389824755", + "1.2542188827", + "1.1679874782", + "1.1003765273", + "1.1607592452", + "1.2334635395", + "1.0792980343", + "1.1081566364", + "1.114278885", + "1.1710682569", + "1.124398375", + "1.1309120208", + "1.1356943668", + "1.1169430061", + "1.143189553", + "1.210467255", + "1.2170214192", + "1.2448069342", + "1.2578099244", + "1.2544302244", + "1.133067144", + "1.1601114511", + "1.1234004956", + "1.1288177141", + "1.180802326", + "1.2131155473", + "1.2050509257", + "1.2134663891", + "1.2005610464", + "1.1876679604", + "1.1922144484", + "1.2458397403", + "1.3012255617", + "1.3979828829", + "1.3111073008", + "1.3104769959", + "1.3383027476", + "1.2756903879", + "1.3425365072", + "1.3375825807", + "1.30255748", + "1.3118209457", + "1.2071070646", + "1.4986641299", + "1.4248188212", + "1.4340078416", + "1.3615174693", + "1.3738083109", + "1.3634232114", + "1.4656268205", + "1.3928584583", + "1.4310460732", + "1.4251289474", + "1.4030134294", + "1.3322406429", + "1.3349854864", + "1.3796440365", + "1.3734047949", + "1.3779935955", + "1.3433920077", + "1.3349729832", + "1.3269361418", + "1.3865852633", + "1.3454139074", + "1.3530826098", + "1.3236034386", + "1.2763503583", + "1.3799130106", + "1.3179971217", + "1.311130477", + "1.3313587089", + "1.4075029665", + "1.4197745251", + "1.4283633883", + "1.4234756197", + "1.4172708933", + "1.4071110985", + "1.4061292097", + "1.3994761278", + "1.5176710053", + "1.4985542804", + "1.3724894003", + "1.4217747433", + "1.4217020614", + "1.415342833", + "1.4178556035", + "1.4839381036", + "1.4784880812", + "1.4333665418", + "1.4193311982", + "1.4166782961", + "1.4051822121", + "1.4239156058", + "1.3923919816", + "1.3833478313", + "1.3791862714", + "1.3947469653", + "1.3902172762", + "1.3811153285", + "1.3876852429", + "1.4023605567", + "1.4171111292", + "1.426045496", + "1.4525101837", + "1.4040407912", + "1.4280525589", + "1.4389775825", + "1.3826659371", + "1.4369856762", + "1.4119178239", + "1.3878552348", + "1.387356464", + "1.3950497811", + "1.3890146714", + "1.3621467483", + "1.3700918064", + "1.3732340158", + "1.3445143003" + ] + }, + "essential_compounds": [ + "15dap", + "4abut", + "4hbz", + "ac", + "acac", + "acald", + "acgam", + "adn", + "adocbl", + "akg", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arg_L", + "asn_L", + "asp_L", + "bhb", + "but", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cgly", + "chol", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "ddca", + "dgsn", + "din", + "dms", + "dmso", + "drib", + "duri", + "etoh", + "fe2", + "fe3", + "for", + "fru", + "fum", + "gal", + "galt", + "galur", + "gam", + "gbbtn", + "gcald", + "glc_D", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gsn", + "h2o", + "h2s", + "h", + "hdca", + "hg2", + "his_L", + "hxan", + "ile_L", + "indole", + "ins", + "k", + "lac_D", + "lac_L", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man", + "mantr", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "na1", + "nac", + "ncam", + "nh4", + "ni2", + "nmn", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppi", + "pppn", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "rib_D", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "so4", + "spmd", + "succ", + "sucr", + "tet", + "thm", + "thr_L", + "thymd", + "tma", + "tmao", + "tre", + "trp_L", + "tsul", + "ttdca", + "tyr_L", + "ura", + "urea", + "uri", + "val_L", + "xan", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_404.json b/agents/agora/agent_404.json new file mode 100644 index 0000000000000000000000000000000000000000..368a7e050403df54f56ac882a5d23e1527862830 --- /dev/null +++ b/agents/agora/agent_404.json @@ -0,0 +1,949 @@ +{ + "id": 404, + "name": "Faecalibacterium_prausnitzii_A2_165", + "N_R": 1296, + "taxonomy": { + "k": 404, + "tax_distance": [ + "2.5274580461", + "2.1095801788", + "2.1028809497", + "2.3294636568", + "2.0108635829", + "2.0559922698", + "2.037286972", + "2.0343443777", + "2.098325976", + "2.0166818841", + "2.0337465875", + "2.1418689013", + "2.1148866796", + "2.3429006375", + "2.3912574546", + "2.4215899652", + "2.3019395673", + "2.3108636841", + "2.3463381597", + "1.8793224757", + "1.814651499", + "1.5641302403", + "1.4974798079", + "1.3760001312", + "1.2018208524", + "1.1960096443", + "1.1926550729", + "1.1950161273", + "1.1792498373", + "1.1705640744", + "1.1730149805", + "1.2746009166", + "1.2841387194", + "1.2805048094", + "1.296200878", + "1.264699298", + "1.2874452421", + "1.3057511536", + "1.2867191906", + "1.5796598496", + "1.3245014709", + "1.2431404149", + "1.2499057211", + "1.2525133012", + "1.2492815592", + "1.2522549409", + "1.247356336", + "1.2477413713", + "1.2419264605", + "1.2339652709", + "1.1755430929", + "1.1810554929", + "1.1753146596", + "1.147468389", + "1.1539901331", + "1.1830921303", + "1.1570152435", + "1.1549992159", + "1.1757536215", + "1.1734137268", + "1.1566718993", + "1.1820226709", + "1.1840974607", + "1.1827665675", + "1.197157785", + "1.1988799469", + "1.1988799469", + "1.2055255296", + "1.2055255296", + "1.2055255296", + "1.2055255296", + "1.2055255296", + "1.2055255296", + "1.2055255296", + "1.2055255296", + "1.2014461669", + "1.2017919041", + "1.1953601965", + "1.2058526711", + "1.2049474292", + "1.2010492596", + "1.199306586", + "1.2006251558", + "1.1971232753", + "1.192045527", + "1.1953906526", + "1.2008364194", + "1.1962982277", + "1.1812982716", + "1.1896693865", + "1.1843940013", + "1.2005419423", + "1.1958446531", + "1.1999782224", + "1.1779385118", + "1.172538328", + "1.1866046831", + "1.1972650921", + "1.2140621351", + "1.1964718449", + "1.1864767264", + "1.1851589088", + "1.1659085289", + "1.1787870179", + "1.2376594629", + "1.2325075512", + "1.2994038085", + "1.2655645525", + "1.2027559117", + "1.2064821685", + "1.2092156356", + "1.2021115541", + "1.2021115541", + "1.1834876519", + "1.1863917982", + "1.1782912815", + "1.2138169802", + "1.1505944307", + "1.1285035173", + "1.1463678736", + "1.1330968783", + "1.1335224707", + "1.2517741843", + "1.2589646351", + "1.280405648", + "1.0850019323", + "1.2547508856", + "1.2614261197", + "1.2460630274", + "1.2656970326", + "1.2548841186", + "1.2599506049", + "1.2514543273", + "1.2445042222", + "1.2353745251", + "1.2360326455", + "1.2549465687", + "1.2280651248", + "1.2101009143", + "1.3039888552", + "1.3053627289", + "1.2746743166", + "1.3322540072", + "1.2698325947", + "1.2753265375", + "1.2723655124", + "1.2970724975", + "1.2862500487", + "1.1944069767", + "1.1654968872", + "1.1266858272", + "1.104584534", + "1.0959427277", + "1.0908225366", + "1.1276941623", + "1.1301892882", + "1.1020012193", + "1.0903632654", + "1.0939497744", + "1.1629028852", + "1.1696112673", + "1.1392403207", + "1.2631583939", + "1.2576434985", + "1.2599845497", + "1.2177076235", + "1.213853644", + "1.2517602177", + "1.2435834034", + "1.2123413809", + "1.2139007396", + "1.2319207333", + "1.1886159386", + "1.1777798096", + "1.1789403621", + "1.2124267035", + "1.2006031508", + "1.1819762936", + "1.2009649159", + "1.1822969172", + "1.1961118594", + "1.1903292884", + "1.1892609064", + "1.2098193581", + "1.2056068107", + "1.1884877653", + "1.2227161393", + "1.2074818976", + "1.2125942066", + "1.2119875211", + "1.1763858907", + "1.1723656825", + "1.1568983309", + "1.1752448361", + "1.1721784613", + "1.1464868675", + "1.1294741196", + "1.1241664687", + "1.1289082533", + "1.1280496426", + "1.1608156025", + "1.1598349407", + "1.1838747383", + "1.1617657113", + "1.1222577193", + "1.1254221301", + "1.1504840221", + "1.146775138", + "1.1225245213", + "1.1150671714", + "1.1174204307", + "1.1265979656", + "1.0523638687", + "1.0949669695", + "1.0792631988", + "1.0731014356", + "1.0668211908", + "1.0547185732", + "1.0578889126", + "1.100061002", + "1.5344528332", + "1.6192310323", + "1.5317664572", + "1.5169487451", + "1.4952761123", + "1.0489537712", + "1.0677581772", + "1.1176910423", + "1.0793302903", + "1.0945674933", + "1.2081046309", + "1.161875238", + "1.1835269122", + "1.1421935661", + "1.0555318776", + "1.0679142205", + "1.0744052917", + "1.1348318285", + "1.1260322959", + "1.1241135649", + "1.150115846", + "1.1474234104", + "1.1386553548", + "1.1701759784", + "1.1782594429", + "1.1624481697", + "1.1358299199", + "1.1304843468", + "1.1358950227", + "1.1246018815", + "1.0695709867", + "1.0746558086", + "1.0739005851", + "1.1207121696", + "1.0761418902", + "1.0585936918", + "1.136018498", + "1.0892858582", + "1.0643683957", + "1.0774038869", + "1.0480193733", + "1.0132330151", + "1.0973210509", + "1.0996748373", + "1.104452047", + "1.109797645", + "1.0754966192", + "1.1361523685", + "1.1429884839", + "1.1394994814", + "1.1521645468", + "1.138248504", + "1.1180325978", + "1.1094318291", + "1.1560836973", + "1.17536197", + "1.2260409899", + "1.0689633737", + "1.0381360796", + "1.1311417935", + "1.1301250936", + "1.1173460179", + "1.0742707308", + "1.139094045", + "1.1300372928", + "1.1326895551", + "1.1638288604", + "1.1054877272", + "1.0907540244", + "1.0723788961", + "1.1006945348", + "1.0722016095", + "1.1273475268", + "1.1583409268", + "1.1809737746", + "1.1376575976", + "1.1090038091", + "1.1292507058", + "1.1090043174", + "1.0953903425", + "1.0601352716", + "1.0950848311", + "1.0261743552", + "1.0434397262", + "1.1262484372", + "1.1146137764", + "1.1117153501", + "1.1218696573", + "1.1302325428", + "1.1195551816", + "1.1314957492", + "1.1199622917", + "1.1175007851", + "1.0859116535", + "1.0919065593", + "1.0981645565", + "1.0853190111", + "1.118857648", + "1.0510868597", + "1.1095848", + "1.1067295674", + "1.0969700999", + "1.0961952235", + "1.1223373483", + "1.0989461115", + "1.0686399735", + "0.9833118741", + "0.9951164189", + "0.9961336948", + "0.9401569176", + "0.9522838381", + "0.9489954361", + "0.930321237", + "0.9390031887", + "0.9349624018", + "0.924999252", + "0.9508002786", + "0.9474889419", + "0.9108596636", + "0.9293980963", + "0.8871568373", + "0.8898357761", + "0.9038261914", + "0.9053273011", + "0.891997456", + "0.8814760619", + "0.9082304942", + "0.8941535471", + "0.85414725", + "0.8615107856", + "1.0310783491", + "0.8514118403", + "0.8559561946", + "0.8595599685", + "0.8555073603", + "0.8226253336", + "0.8524340084", + "0.8724932506", + "0.8744859743", + "0.8725683749", + "0.8558852859", + "0.8547253563", + "0.8204889465", + "0.822764748", + "0.9486481415", + "0.9598424976", + "0.8461292733", + "0.8517866851", + "0.8418579935", + "0.8059898129", + "0.8315982098", + "0.8223330953", + "0.8144683475", + "0.8136144171", + "0.821138973", + "0.8151314992", + "0.8342004181", + "0.8281241013", + "0.8398464521", + "0.8346136763", + "0.8213974271", + "0.8094637254", + "0.8191244513", + "0.814970967", + "0.8208732696", + "0.8129249248", + "0.7883643891", + "0.7977773556", + "0.7916089402", + "0.8196401278", + "0.8173351802", + "0.2714899125", + "0.2853210353", + "0.298013146", + "0.1614249801", + "0.165048879", + "0.1538357358", + "0.1504723211", + "0.1310222333", + "0.1063244518", + "0.1232415107", + "0.1130425025", + "0.1176012743", + "0.0", + "0.1732611763", + "0.1650859697", + "0.2251769492", + "0.2016391759", + "0.2019562019", + "0.2266932462", + "0.2212006515", + "0.2113060274", + "0.2714831038", + "0.2423919709", + "0.2125951803", + "0.2314101997", + "0.2511759579", + "0.2272856482", + "0.2089890229", + "0.237502199", + "0.2538073905", + "0.2611637907", + "0.2435619677", + "0.3982195893", + "0.4043908464", + "0.4081085039", + "0.4433705955", + "0.3973822135", + "0.4230580212", + "0.3599690486", + "0.3428506105", + "0.662176459", + "0.6731651476", + "0.6072364381", + "0.6085133145", + "0.5666964666", + "0.5831156376", + "0.5814993035", + "0.6052384329", + "0.5926629717", + "0.570460152", + "0.7516511577", + "0.7579504933", + "0.7379521879", + "0.7504806338", + "0.7490066361", + "0.7174084263", + "0.7272075658", + "0.7761361158", + "0.8115602789", + "0.7863730996", + "0.7670612974", + "0.7159152222", + "0.7277138229", + "0.7274072727", + "0.7582231681", + "0.7585808639", + "0.6912983428", + "0.8290709492", + "0.8336545904", + "0.8433981664", + "0.8231597105", + "0.7848550303", + "0.8542485271", + "0.8352122036", + "0.8400738918", + "0.7768620454", + "0.8085741588", + "0.8172102175", + "0.8288679717", + "0.8113034322", + "0.7979391166", + "0.762306135", + "0.7613917626", + "0.7678584524", + "0.8436967351", + "0.8238132474", + "0.8991961458", + "0.8532065927", + "0.807549016", + "0.8137540529", + "0.8186943423", + "0.8133856836", + "0.8075840826", + "0.8350243516", + "0.8171678878", + "0.8091183942", + "0.8001054272", + "0.8220429042", + "0.8165410594", + "0.8181749514", + "0.7821248603", + "0.7842813317", + "0.7574071188", + "0.8406708093", + "0.816409033", + "0.8017672194", + "0.7820358735", + "0.9177595642", + "0.9210193725", + "0.9489263538", + "0.9035621748", + "0.9076654908", + "0.9217139703", + "0.9354304361", + "0.9590696573", + "0.9002649656", + "0.8782787977", + "0.9068850302", + "0.8751356856", + "0.8784495109", + "0.8914167577", + "0.8717713928", + "0.879033737", + "0.8646688841", + "0.8605804552", + "0.9423240879", + "0.9345155535", + "0.888834744", + "0.9096017067", + "0.906282436", + "0.9594917955", + "0.8868901498", + "0.8711013729", + "0.8887338998", + "0.8895570155", + "0.8909868777", + "0.9164078477", + "0.9283324971", + "0.9867965173", + "0.9901829115", + "0.973228589", + "0.9584607267", + "0.9392345938", + "0.9083687145", + "1.2696507763", + "1.2940912528", + "1.2579359743", + "1.268586579", + "1.2458310445", + "1.2320794236", + "1.3224278091", + "1.3512719942", + "1.3523899164", + "1.2766590518", + "1.2741911765", + "1.2742578921", + "1.2680479979", + "1.2861352065", + "1.2621523507", + "1.2380045202", + "1.2008014103", + "1.2089444079", + "1.1871258293", + "1.2078574788", + "1.1661419085", + "1.1806294414", + "1.1822818676", + "1.1878977086", + "1.1804048932", + "1.1799394941", + "1.1772003462", + "1.1675027191", + "1.1852099414", + "1.1653563058", + "1.1678034567", + "1.1635436223", + "1.1782020693", + "1.1973021714", + "1.1406000527", + "1.1630008269", + "1.1710384577", + "1.1701805481", + "1.1534372027", + "1.1426593632", + "1.1427905209", + "1.1474831685", + "1.1507999423", + "1.1835205543", + "1.2147226428", + "1.2096506649", + "1.1335923944", + "1.1344836794", + "1.1297353677", + "1.1357846178", + "1.0568162998", + "0.9537729827", + "0.9674054957", + "1.2066325974", + "1.4144832232", + "1.1681237863", + "1.2286390718", + "1.2300310208", + "1.2058944134", + "1.2135729166", + "1.2362933076", + "1.2260948397", + "1.2435039357", + "1.2446579971", + "1.2412206671", + "1.2408817087", + "1.267666181", + "1.2376236633", + "1.2412629418", + "1.2450875233", + "1.2453070571", + "1.2086596927", + "1.2135360079", + "1.234582048", + "1.215034235", + "1.2223749821", + "1.1742863967", + "1.166734491", + "1.197447072", + "1.193622825", + "1.2059719172", + "1.210829553", + "1.2054741987", + "1.2050376285", + "1.1960887573", + "1.2081051775", + "1.1857544362", + "1.2017029548", + "1.2104156939", + "1.206130412", + "1.2143279784", + "1.2295841999", + "1.2250535474", + "1.1661478434", + "1.2038983536", + "1.1943997502", + "1.1564938215", + "1.426669149", + "1.4593058068", + "1.4247823675", + "1.433461221", + "1.4073516772", + "1.2211418373", + "1.0744120654", + "1.0664446401", + "1.1197797512", + "1.0830518365", + "1.0880923276", + "1.0858617295", + "1.0735153088", + "1.0784579099", + "1.0317076254", + "1.0870031015", + "1.0813653502", + "1.1268507731", + "1.1049459513", + "1.0973007151", + "1.0846308411", + "0.9975197058", + "1.0014373219", + "1.1095920471", + "1.0921480508", + "1.0960953633", + "1.0909077123", + "1.0634915795", + "1.1525669445", + "1.1001365106", + "1.1001828855", + "1.1972317554", + "1.2277787182", + "1.1831905319", + "1.1901829033", + "1.1629465585", + "1.1683343567", + "1.1675014788", + "1.1596681632", + "1.1022887813", + "1.2509025336", + "1.3050675011", + "1.2720904244", + "1.2612888235", + "1.2685947381", + "1.2091898995", + "1.2217907304", + "1.2288483434", + "1.2240863111", + "1.2734493526", + "1.2794362248", + "1.2888350739", + "1.3009264541", + "1.2361024941", + "1.2778912152", + "1.2760227989", + "1.2024372367", + "1.2005649657", + "1.2287607394", + "1.2218641085", + "1.2736828598", + "1.1773587486", + "1.1226880902", + "1.1405018211", + "1.1032464253", + "1.1356461528", + "1.2188769136", + "1.2321192698", + "1.2470354972", + "1.2622719044", + "1.1760404999", + "1.108429549", + "1.1688122669", + "1.2415165612", + "1.087351056", + "1.1162096581", + "1.1223319067", + "1.1791212786", + "1.1324513967", + "1.1389650425", + "1.1437473885", + "1.1249960278", + "1.1512425747", + "1.2185202767", + "1.2250744409", + "1.2528599559", + "1.2658629461", + "1.2624832461", + "1.1411201657", + "1.1681644728", + "1.1314535173", + "1.1368707358", + "1.1888553477", + "1.221168569", + "1.2131039474", + "1.2215194108", + "1.2086140681", + "1.1957209821", + "1.2002674701", + "1.253892762", + "1.3092785834", + "1.4060359046", + "1.3191603225", + "1.3185300176", + "1.3463557693", + "1.2837434096", + "1.3505895289", + "1.3456356024", + "1.3106105017", + "1.3198739674", + "1.2151600863", + "1.5067171516", + "1.4328718429", + "1.4420608633", + "1.369570491", + "1.3818613326", + "1.3714762331", + "1.4736798422", + "1.40091148", + "1.4390990949", + "1.4331819691", + "1.4110664511", + "1.3402936646", + "1.3430385081", + "1.3876970582", + "1.3814578166", + "1.3860466172", + "1.3514450294", + "1.3430260049", + "1.3349891635", + "1.394638285", + "1.3534669291", + "1.3611356315", + "1.3316564603", + "1.28440338", + "1.3879660323", + "1.3260501434", + "1.3191834987", + "1.3394117306", + "1.4155559882", + "1.4278275468", + "1.43641641", + "1.4315286414", + "1.425323915", + "1.4151641202", + "1.4141822314", + "1.4075291495", + "1.525724027", + "1.5066073021", + "1.380542422", + "1.429827765", + "1.4297550831", + "1.4233958547", + "1.4259086252", + "1.4919911253", + "1.4865411029", + "1.4414195635", + "1.4273842199", + "1.4247313178", + "1.4132352338", + "1.4319686275", + "1.4004450033", + "1.391400853", + "1.3872392931", + "1.402799987", + "1.3982702979", + "1.3891683502", + "1.3957382646", + "1.4104135784", + "1.4251641509", + "1.4340985177", + "1.4605632054", + "1.4120938129", + "1.4361055806", + "1.4470306042", + "1.3907189588", + "1.4450386979", + "1.4199708456", + "1.3959082565", + "1.3954094857", + "1.4031028028", + "1.3970676931", + "1.37019977", + "1.3781448281", + "1.3812870375", + "1.352567322" + ] + }, + "essential_compounds": [ + "12dhchol", + "3dhcdchol", + "3dhchol", + "4hbz", + "C02528", + "HC02191", + "HC02194", + "ac", + "adchac", + "adn", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alchac", + "alltn", + "arab_D", + "arg_L", + "asn_L", + "aso3", + "aso4", + "asp_L", + "ca2", + "cd2", + "cgly", + "cholate", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "dchac", + "ddca", + "dms", + "dmso", + "fe2", + "fe3", + "fol", + "for", + "gbbtn", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyc3p", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hg2", + "his_L", + "hxan", + "icdchol", + "isochol", + "k", + "lac_L", + "lanost", + "leu_L", + "lys_L", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "na1", + "nac", + "nh4", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "pnto_R", + "ppi", + "pro_L", + "ptrc", + "q8", + "ribflv", + "sheme", + "so3", + "so4", + "spmd", + "succ", + "tet", + "thm", + "thr_L", + "tma", + "tmao", + "trp_L", + "tsul", + "ttdca", + "tyr_L", + "ura", + "xan", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_405.json b/agents/agora/agent_405.json new file mode 100644 index 0000000000000000000000000000000000000000..27db433d67db18d37c418d895e773ac46cd633c0 --- /dev/null +++ b/agents/agora/agent_405.json @@ -0,0 +1,946 @@ +{ + "id": 405, + "name": "Faecalibacterium_prausnitzii_L2_6", + "N_R": 924, + "taxonomy": { + "k": 405, + "tax_distance": [ + "2.5132432096", + "2.0953653423", + "2.0886661132", + "2.3152488203", + "1.9966487464", + "2.0417774333", + "2.0230721355", + "2.0201295412", + "2.0841111395", + "2.0024670476", + "2.019531751", + "2.1276540648", + "2.1006718431", + "2.328685801", + "2.3770426181", + "2.4073751287", + "2.2877247308", + "2.2966488476", + "2.3321233232", + "1.8651076392", + "1.8004366625", + "1.5499154038", + "1.4832649714", + "1.3617852947", + "1.1876060159", + "1.1817948078", + "1.1784402364", + "1.1808012908", + "1.1650350008", + "1.1563492379", + "1.158800144", + "1.2603860801", + "1.2699238829", + "1.2662899729", + "1.2819860415", + "1.2504844615", + "1.2732304056", + "1.2915363171", + "1.2725043541", + "1.5654450131", + "1.3102866344", + "1.2289255784", + "1.2356908846", + "1.2382984647", + "1.2350667227", + "1.2380401044", + "1.2331414995", + "1.2335265348", + "1.227711624", + "1.2197504344", + "1.1613282564", + "1.1668406564", + "1.1610998231", + "1.1332535525", + "1.1397752966", + "1.1688772938", + "1.142800407", + "1.1407843794", + "1.161538785", + "1.1591988903", + "1.1424570628", + "1.1678078344", + "1.1698826242", + "1.168551731", + "1.1829429485", + "1.1846651104", + "1.1846651104", + "1.1913106931", + "1.1913106931", + "1.1913106931", + "1.1913106931", + "1.1913106931", + "1.1913106931", + "1.1913106931", + "1.1913106931", + "1.1872313304", + "1.1875770676", + "1.18114536", + "1.1916378346", + "1.1907325927", + "1.1868344231", + "1.1850917495", + "1.1864103193", + "1.1829084388", + "1.1778306905", + "1.1811758161", + "1.1866215829", + "1.1820833912", + "1.1670834351", + "1.17545455", + "1.1701791648", + "1.1863271058", + "1.1816298166", + "1.1857633859", + "1.1637236753", + "1.1583234915", + "1.1723898466", + "1.1830502556", + "1.1998472986", + "1.1822570084", + "1.1722618899", + "1.1709440723", + "1.1516936924", + "1.1645721814", + "1.2234446264", + "1.2182927147", + "1.285188972", + "1.251349716", + "1.1885410752", + "1.192267332", + "1.1950007991", + "1.1878967176", + "1.1878967176", + "1.1692728154", + "1.1721769617", + "1.164076445", + "1.1996021437", + "1.1363795942", + "1.1142886808", + "1.1321530371", + "1.1188820418", + "1.1193076342", + "1.2375593478", + "1.2447497986", + "1.2661908115", + "1.0707870958", + "1.2405360491", + "1.2472112832", + "1.2318481909", + "1.2514821961", + "1.2406692821", + "1.2457357684", + "1.2372394908", + "1.2302893857", + "1.2211596886", + "1.221817809", + "1.2407317322", + "1.2138502883", + "1.1958860778", + "1.2897740187", + "1.2911478924", + "1.2604594801", + "1.3180391707", + "1.2556177582", + "1.261111701", + "1.2581506759", + "1.282857661", + "1.2720352122", + "1.1801921402", + "1.1512820507", + "1.1124709907", + "1.0903696975", + "1.0817278912", + "1.0766077001", + "1.1134793258", + "1.1159744517", + "1.0877863828", + "1.0761484289", + "1.0797349379", + "1.1486880487", + "1.1553964308", + "1.1250254842", + "1.2489435574", + "1.243428662", + "1.2457697132", + "1.203492787", + "1.1996388075", + "1.2375453812", + "1.2293685669", + "1.1981265444", + "1.1996859031", + "1.2177058968", + "1.1744011021", + "1.1635649731", + "1.1647255256", + "1.198211867", + "1.1863883143", + "1.1677614571", + "1.1867500794", + "1.1680820807", + "1.1818970229", + "1.1761144519", + "1.1750460699", + "1.1956045216", + "1.1913919742", + "1.1742729288", + "1.2085013028", + "1.1932670611", + "1.1983793701", + "1.1977726846", + "1.1621710542", + "1.158150846", + "1.1426834944", + "1.1610299996", + "1.1579636248", + "1.132272031", + "1.1152592831", + "1.1099516322", + "1.1146934168", + "1.1138348061", + "1.146600766", + "1.1456201042", + "1.1696599018", + "1.1475508748", + "1.1080428828", + "1.1112072936", + "1.1362691856", + "1.1325603015", + "1.1083096848", + "1.1008523349", + "1.1032055942", + "1.1123831291", + "1.0381490322", + "1.080752133", + "1.0650483623", + "1.0588865991", + "1.0526063543", + "1.0405037367", + "1.0436740761", + "1.0858461655", + "1.5202379967", + "1.6050161958", + "1.5175516207", + "1.5027339086", + "1.4810612758", + "1.0347389347", + "1.0535433407", + "1.1034762058", + "1.0651154538", + "1.0803526568", + "1.1938897944", + "1.1476604015", + "1.1693120757", + "1.1279787296", + "1.0413170411", + "1.053699384", + "1.0601904552", + "1.120616992", + "1.1118174594", + "1.1098987284", + "1.1359010095", + "1.1332085739", + "1.1244405183", + "1.1559611419", + "1.1640446064", + "1.1482333332", + "1.1216150834", + "1.1162695103", + "1.1216801862", + "1.110387045", + "1.0553561502", + "1.0604409721", + "1.0596857486", + "1.1064973331", + "1.0619270537", + "1.0443788553", + "1.1218036615", + "1.0750710217", + "1.0501535592", + "1.0631890504", + "1.0338045368", + "0.9990181786", + "1.0831062144", + "1.0854600008", + "1.0902372105", + "1.0955828085", + "1.0612817827", + "1.121937532", + "1.1287736474", + "1.1252846449", + "1.1379497103", + "1.1240336675", + "1.1038177613", + "1.0952169926", + "1.1418688608", + "1.1611471335", + "1.2118261534", + "1.0547485372", + "1.0239212431", + "1.116926957", + "1.1159102571", + "1.1031311814", + "1.0600558943", + "1.1248792085", + "1.1158224563", + "1.1184747186", + "1.1496140239", + "1.0912728907", + "1.0765391879", + "1.0581640596", + "1.0864796983", + "1.057986773", + "1.1131326903", + "1.1441260903", + "1.1667589381", + "1.1234427611", + "1.0947889726", + "1.1150358693", + "1.0947894809", + "1.081175506", + "1.0459204351", + "1.0808699946", + "1.0119595187", + "1.0292248897", + "1.1120336007", + "1.1003989399", + "1.0975005136", + "1.1076548208", + "1.1160177063", + "1.1053403451", + "1.1172809127", + "1.1057474552", + "1.1032859486", + "1.071696817", + "1.0776917228", + "1.08394972", + "1.0711041746", + "1.1046428115", + "1.0368720232", + "1.0953699635", + "1.0925147309", + "1.0827552634", + "1.081980387", + "1.1081225118", + "1.084731275", + "1.054425137", + "0.9690970376", + "0.9809015824", + "0.9819188583", + "0.9259420811", + "0.9380690016", + "0.9347805996", + "0.9161064005", + "0.9247883522", + "0.9207475653", + "0.9107844155", + "0.9365854421", + "0.9332741054", + "0.8966448271", + "0.9151832598", + "0.8729420008", + "0.8756209396", + "0.8896113549", + "0.8911124646", + "0.8777826195", + "0.8672612254", + "0.8940156577", + "0.8799387106", + "0.8399324135", + "0.8472959491", + "1.0168635126", + "0.8371970038", + "0.8417413581", + "0.845345132", + "0.8412925238", + "0.8084104971", + "0.8382191719", + "0.8582784141", + "0.8602711378", + "0.8583535384", + "0.8416704494", + "0.8405105198", + "0.80627411", + "0.8085499115", + "0.934433305", + "0.9456276611", + "0.8319144368", + "0.8375718486", + "0.827643157", + "0.7917749764", + "0.8173833733", + "0.8081182588", + "0.800253511", + "0.7993995806", + "0.8069241365", + "0.8009166627", + "0.8199855816", + "0.8139092648", + "0.8256316156", + "0.8203988398", + "0.8071825906", + "0.7952488889", + "0.8049096148", + "0.8007561305", + "0.8066584331", + "0.7987100883", + "0.7741495526", + "0.7835625191", + "0.7773941037", + "0.8054252913", + "0.8031203437", + "0.257275076", + "0.2711061988", + "0.2837983095", + "0.1684969674", + "0.1721208663", + "0.1609077231", + "0.176958121", + "0.1575080332", + "0.1539313321", + "0.170848391", + "0.1606493828", + "0.1652081546", + "0.1732611763", + "0.0", + "0.0938509184", + "0.1865062209", + "0.1629684476", + "0.1632854736", + "0.2124784097", + "0.206985815", + "0.1970911909", + "0.2572682673", + "0.2281771344", + "0.1983803438", + "0.2171953632", + "0.2369611214", + "0.2130708117", + "0.1947741864", + "0.2232873625", + "0.239592554", + "0.2469489542", + "0.2293471312", + "0.3840047528", + "0.3901760099", + "0.3938936674", + "0.429155759", + "0.383167377", + "0.4088431847", + "0.3457542121", + "0.328635774", + "0.6479616225", + "0.6589503111", + "0.5930216016", + "0.594298478", + "0.5524816301", + "0.5689008011", + "0.567284467", + "0.5910235964", + "0.5784481352", + "0.5562453155", + "0.7374363212", + "0.7437356568", + "0.7237373514", + "0.7362657973", + "0.7347917996", + "0.7031935898", + "0.7129927293", + "0.7619212793", + "0.7973454424", + "0.7721582631", + "0.7528464609", + "0.7017003857", + "0.7134989864", + "0.7131924362", + "0.7440083316", + "0.7443660274", + "0.6770835063", + "0.8148561127", + "0.8194397539", + "0.8291833299", + "0.808944874", + "0.7706401938", + "0.8400336906", + "0.8209973671", + "0.8258590553", + "0.7626472089", + "0.7943593223", + "0.802995381", + "0.8146531352", + "0.7970885957", + "0.7837242801", + "0.7480912985", + "0.7471769261", + "0.7536436159", + "0.8294818986", + "0.8095984109", + "0.8849813093", + "0.8389917562", + "0.7933341795", + "0.7995392164", + "0.8044795058", + "0.7991708471", + "0.7933692461", + "0.8208095151", + "0.8029530513", + "0.7949035577", + "0.7858905907", + "0.8078280677", + "0.8023262229", + "0.8039601149", + "0.7679100238", + "0.7700664952", + "0.7431922823", + "0.8264559728", + "0.8021941965", + "0.7875523829", + "0.767821037", + "0.9035447277", + "0.906804536", + "0.9347115173", + "0.8893473383", + "0.8934506543", + "0.9074991338", + "0.9212155996", + "0.9448548208", + "0.8860501291", + "0.8640639612", + "0.8926701937", + "0.8609208491", + "0.8642346744", + "0.8772019212", + "0.8575565563", + "0.8648189005", + "0.8504540476", + "0.8463656187", + "0.9281092514", + "0.920300717", + "0.8746199075", + "0.8953868702", + "0.8920675995", + "0.945276959", + "0.8726753133", + "0.8568865364", + "0.8745190633", + "0.875342179", + "0.8767720412", + "0.9021930112", + "0.9141176606", + "0.9725816808", + "0.975968075", + "0.9590137525", + "0.9442458902", + "0.9250197573", + "0.894153878", + "1.2554359398", + "1.2798764163", + "1.2437211378", + "1.2543717425", + "1.231616208", + "1.2178645871", + "1.3082129726", + "1.3370571577", + "1.3381750799", + "1.2624442153", + "1.25997634", + "1.2600430556", + "1.2538331614", + "1.27192037", + "1.2479375142", + "1.2237896837", + "1.1865865738", + "1.1947295714", + "1.1729109928", + "1.1936426423", + "1.151927072", + "1.1664146049", + "1.1680670311", + "1.1736828721", + "1.1661900567", + "1.1657246576", + "1.1629855097", + "1.1532878826", + "1.1709951049", + "1.1511414693", + "1.1535886202", + "1.1493287858", + "1.1639872328", + "1.1830873349", + "1.1263852162", + "1.1487859904", + "1.1568236212", + "1.1559657116", + "1.1392223662", + "1.1284445267", + "1.1285756844", + "1.133268332", + "1.1365851058", + "1.1693057178", + "1.2005078063", + "1.1954358284", + "1.1193775579", + "1.1202688429", + "1.1155205312", + "1.1215697813", + "1.0426014633", + "0.9395581462", + "0.9531906592", + "1.1924177609", + "1.4002683867", + "1.1539089498", + "1.2144242353", + "1.2158161843", + "1.1916795769", + "1.1993580801", + "1.2220784711", + "1.2118800032", + "1.2292890992", + "1.2304431606", + "1.2270058306", + "1.2266668722", + "1.2534513445", + "1.2234088268", + "1.2270481053", + "1.2308726868", + "1.2310922206", + "1.1944448562", + "1.1993211714", + "1.2203672115", + "1.2008193985", + "1.2081601456", + "1.1600715602", + "1.1525196545", + "1.1832322355", + "1.1794079885", + "1.1917570807", + "1.1966147165", + "1.1912593622", + "1.190822792", + "1.1818739208", + "1.193890341", + "1.1715395997", + "1.1874881183", + "1.1962008574", + "1.1919155755", + "1.2001131419", + "1.2153693634", + "1.2108387109", + "1.1519330069", + "1.1896835171", + "1.1801849137", + "1.142278985", + "1.4124543125", + "1.4450909703", + "1.410567531", + "1.4192463845", + "1.3931368407", + "1.2069270008", + "1.0601972289", + "1.0522298036", + "1.1055649147", + "1.068837", + "1.0738774911", + "1.071646893", + "1.0593004723", + "1.0642430734", + "1.0174927889", + "1.072788265", + "1.0671505137", + "1.1126359366", + "1.0907311148", + "1.0830858786", + "1.0704160046", + "0.9833048693", + "0.9872224854", + "1.0953772106", + "1.0779332143", + "1.0818805268", + "1.0766928758", + "1.049276743", + "1.138352108", + "1.0859216741", + "1.085968049", + "1.1830169189", + "1.2135638817", + "1.1689756954", + "1.1759680668", + "1.148731722", + "1.1541195202", + "1.1532866423", + "1.1454533267", + "1.0880739448", + "1.2366876971", + "1.2908526646", + "1.2578755879", + "1.247073987", + "1.2543799016", + "1.194975063", + "1.2075758939", + "1.2146335069", + "1.2098714746", + "1.2592345161", + "1.2652213883", + "1.2746202374", + "1.2867116176", + "1.2218876576", + "1.2636763787", + "1.2618079624", + "1.1882224002", + "1.1863501292", + "1.2145459029", + "1.207649272", + "1.2594680233", + "1.1631439121", + "1.1084732537", + "1.1262869846", + "1.0890315888", + "1.1214313163", + "1.2046620771", + "1.2179044333", + "1.2328206607", + "1.2480570679", + "1.1618256634", + "1.0942147125", + "1.1545974304", + "1.2273017247", + "1.0731362195", + "1.1019948216", + "1.1081170702", + "1.1649064421", + "1.1182365602", + "1.124750206", + "1.129532552", + "1.1107811913", + "1.1370277382", + "1.2043054402", + "1.2108596044", + "1.2386451194", + "1.2516481096", + "1.2482684096", + "1.1269053292", + "1.1539496363", + "1.1172386808", + "1.1226558993", + "1.1746405112", + "1.2069537325", + "1.1988891109", + "1.2073045743", + "1.1943992316", + "1.1815061456", + "1.1860526336", + "1.2396779255", + "1.2950637469", + "1.3918210681", + "1.304945486", + "1.3043151811", + "1.3321409328", + "1.2695285731", + "1.3363746924", + "1.3314207659", + "1.2963956652", + "1.3056591309", + "1.2009452498", + "1.4925023151", + "1.4186570064", + "1.4278460268", + "1.3553556545", + "1.3676464961", + "1.3572613966", + "1.4594650057", + "1.3866966435", + "1.4248842584", + "1.4189671326", + "1.3968516146", + "1.3260788281", + "1.3288236716", + "1.3734822217", + "1.3672429801", + "1.3718317807", + "1.3372301929", + "1.3288111684", + "1.320774327", + "1.3804234485", + "1.3392520926", + "1.346920795", + "1.3174416238", + "1.2701885435", + "1.3737511958", + "1.3118353069", + "1.3049686622", + "1.3251968941", + "1.4013411517", + "1.4136127103", + "1.4222015735", + "1.4173138049", + "1.4111090785", + "1.4009492837", + "1.3999673949", + "1.393314313", + "1.5115091905", + "1.4923924656", + "1.3663275855", + "1.4156129285", + "1.4155402466", + "1.4091810182", + "1.4116937887", + "1.4777762888", + "1.4723262664", + "1.427204727", + "1.4131693834", + "1.4105164813", + "1.3990203973", + "1.417753791", + "1.3862301668", + "1.3771860165", + "1.3730244566", + "1.3885851505", + "1.3840554614", + "1.3749535137", + "1.3815234281", + "1.3961987419", + "1.4109493144", + "1.4198836812", + "1.4463483689", + "1.3978789764", + "1.4218907441", + "1.4328157677", + "1.3765041223", + "1.4308238614", + "1.4057560091", + "1.38169342", + "1.3811946492", + "1.3888879663", + "1.3828528566", + "1.3559849335", + "1.3639299916", + "1.367072201", + "1.3383524855" + ] + }, + "essential_compounds": [ + "12dhchol", + "26dap_M", + "3dhcdchol", + "3dhchol", + "4abut", + "C02528", + "HC02191", + "HC02194", + "ac", + "adchac", + "adocbl", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alchac", + "alltn", + "arg_L", + "asn_L", + "aso3", + "aso4", + "asp_L", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cgly", + "cholate", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "dchac", + "dms", + "dmso", + "fe2", + "fe3", + "for", + "gbbtn", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyc3p", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "h2", + "h2o", + "h2s", + "h", + "hg2", + "his_L", + "hxan", + "icdchol", + "ile_L", + "isochol", + "k", + "lac_L", + "leu_L", + "lys_L", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "no3", + "o2", + "orn", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppi", + "pro_L", + "pydam", + "pydx", + "pydxn", + "ribflv", + "so3", + "so4", + "succ", + "tet", + "thm", + "thr_L", + "tma", + "tmao", + "trp_L", + "tsul", + "tyr_L", + "ura", + "urea", + "val_L", + "xan", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_406.json b/agents/agora/agent_406.json new file mode 100644 index 0000000000000000000000000000000000000000..e97d9d24951525a7fc306ecd7692683d7c643de0 --- /dev/null +++ b/agents/agora/agent_406.json @@ -0,0 +1,942 @@ +{ + "id": 406, + "name": "Faecalibacterium_prausnitzii_M21_2", + "N_R": 896, + "taxonomy": { + "k": 406, + "tax_distance": [ + "2.505068003", + "2.0871901357", + "2.0804909066", + "2.3070736137", + "1.9884735398", + "2.0336022267", + "2.0148969289", + "2.0119543346", + "2.0759359329", + "1.994291841", + "2.0113565444", + "2.1194788582", + "2.0924966365", + "2.3205105944", + "2.3688674115", + "2.3991999221", + "2.2795495242", + "2.288473641", + "2.3239481166", + "1.8569324326", + "1.7922614559", + "1.5417401972", + "1.4750897648", + "1.3536100881", + "1.1794308093", + "1.1736196012", + "1.1702650298", + "1.1726260842", + "1.1568597942", + "1.1481740313", + "1.1506249374", + "1.2522108735", + "1.2617486763", + "1.2581147663", + "1.2738108349", + "1.2423092549", + "1.265055199", + "1.2833611105", + "1.2643291475", + "1.5572698065", + "1.3021114278", + "1.2207503718", + "1.227515678", + "1.2301232581", + "1.2268915161", + "1.2298648978", + "1.2249662929", + "1.2253513282", + "1.2195364174", + "1.2115752278", + "1.1531530498", + "1.1586654498", + "1.1529246165", + "1.1250783459", + "1.13160009", + "1.1607020872", + "1.1346252004", + "1.1326091728", + "1.1533635784", + "1.1510236837", + "1.1342818562", + "1.1596326278", + "1.1617074176", + "1.1603765244", + "1.1747677419", + "1.1764899038", + "1.1764899038", + "1.1831354865", + "1.1831354865", + "1.1831354865", + "1.1831354865", + "1.1831354865", + "1.1831354865", + "1.1831354865", + "1.1831354865", + "1.1790561238", + "1.179401861", + "1.1729701534", + "1.183462628", + "1.1825573861", + "1.1786592165", + "1.1769165429", + "1.1782351127", + "1.1747332322", + "1.1696554839", + "1.1730006095", + "1.1784463763", + "1.1739081846", + "1.1589082285", + "1.1672793434", + "1.1620039582", + "1.1781518992", + "1.17345461", + "1.1775881793", + "1.1555484687", + "1.1501482849", + "1.16421464", + "1.174875049", + "1.191672092", + "1.1740818018", + "1.1640866833", + "1.1627688657", + "1.1435184858", + "1.1563969748", + "1.2152694198", + "1.2101175081", + "1.2770137654", + "1.2431745094", + "1.1803658686", + "1.1840921254", + "1.1868255925", + "1.179721511", + "1.179721511", + "1.1610976088", + "1.1640017551", + "1.1559012384", + "1.1914269371", + "1.1282043876", + "1.1061134742", + "1.1239778305", + "1.1107068352", + "1.1111324276", + "1.2293841412", + "1.236574592", + "1.2580156049", + "1.0626118892", + "1.2323608425", + "1.2390360766", + "1.2236729843", + "1.2433069895", + "1.2324940755", + "1.2375605618", + "1.2290642842", + "1.2221141791", + "1.212984482", + "1.2136426024", + "1.2325565256", + "1.2056750817", + "1.1877108712", + "1.2815988121", + "1.2829726858", + "1.2522842735", + "1.3098639641", + "1.2474425516", + "1.2529364944", + "1.2499754693", + "1.2746824544", + "1.2638600056", + "1.1720169336", + "1.1431068441", + "1.1042957841", + "1.0821944909", + "1.0735526846", + "1.0684324935", + "1.1053041192", + "1.1077992451", + "1.0796111762", + "1.0679732223", + "1.0715597313", + "1.1405128421", + "1.1472212242", + "1.1168502776", + "1.2407683508", + "1.2352534554", + "1.2375945066", + "1.1953175804", + "1.1914636009", + "1.2293701746", + "1.2211933603", + "1.1899513378", + "1.1915106965", + "1.2095306902", + "1.1662258955", + "1.1553897665", + "1.156550319", + "1.1900366604", + "1.1782131077", + "1.1595862505", + "1.1785748728", + "1.1599068741", + "1.1737218163", + "1.1679392453", + "1.1668708633", + "1.187429315", + "1.1832167676", + "1.1660977222", + "1.2003260962", + "1.1850918545", + "1.1902041635", + "1.189597478", + "1.1539958476", + "1.1499756394", + "1.1345082878", + "1.152854793", + "1.1497884182", + "1.1240968244", + "1.1070840765", + "1.1017764256", + "1.1065182102", + "1.1056595995", + "1.1384255594", + "1.1374448976", + "1.1614846952", + "1.1393756682", + "1.0998676762", + "1.103032087", + "1.128093979", + "1.1243850949", + "1.1001344782", + "1.0926771283", + "1.0950303876", + "1.1042079225", + "1.0299738256", + "1.0725769264", + "1.0568731557", + "1.0507113925", + "1.0444311477", + "1.0323285301", + "1.0354988695", + "1.0776709589", + "1.5120627901", + "1.5968409892", + "1.5093764141", + "1.494558702", + "1.4728860692", + "1.0265637281", + "1.0453681341", + "1.0953009992", + "1.0569402472", + "1.0721774502", + "1.1857145878", + "1.1394851949", + "1.1611368691", + "1.119803523", + "1.0331418345", + "1.0455241774", + "1.0520152486", + "1.1124417854", + "1.1036422528", + "1.1017235218", + "1.1277258029", + "1.1250333673", + "1.1162653117", + "1.1477859353", + "1.1558693998", + "1.1400581266", + "1.1134398768", + "1.1080943037", + "1.1135049796", + "1.1022118384", + "1.0471809436", + "1.0522657655", + "1.051510542", + "1.0983221265", + "1.0537518471", + "1.0362036487", + "1.1136284549", + "1.0668958151", + "1.0419783526", + "1.0550138438", + "1.0256293302", + "0.990842972", + "1.0749310078", + "1.0772847942", + "1.0820620039", + "1.0874076019", + "1.0531065761", + "1.1137623254", + "1.1205984408", + "1.1171094383", + "1.1297745037", + "1.1158584609", + "1.0956425547", + "1.087041786", + "1.1336936542", + "1.1529719269", + "1.2036509468", + "1.0465733306", + "1.0157460365", + "1.1087517504", + "1.1077350505", + "1.0949559748", + "1.0518806877", + "1.1167040019", + "1.1076472497", + "1.110299512", + "1.1414388173", + "1.0830976841", + "1.0683639813", + "1.049988853", + "1.0783044917", + "1.0498115664", + "1.1049574837", + "1.1359508837", + "1.1585837315", + "1.1152675545", + "1.086613766", + "1.1068606627", + "1.0866142743", + "1.0730002994", + "1.0377452285", + "1.072694788", + "1.0037843121", + "1.0210496831", + "1.1038583941", + "1.0922237333", + "1.089325307", + "1.0994796142", + "1.1078424997", + "1.0971651385", + "1.1091057061", + "1.0975722486", + "1.095110742", + "1.0635216104", + "1.0695165162", + "1.0757745134", + "1.062928968", + "1.0964676049", + "1.0286968166", + "1.0871947569", + "1.0843395243", + "1.0745800568", + "1.0738051804", + "1.0999473052", + "1.0765560684", + "1.0462499304", + "0.960921831", + "0.9727263758", + "0.9737436517", + "0.9177668745", + "0.929893795", + "0.926605393", + "0.9079311939", + "0.9166131456", + "0.9125723587", + "0.9026092089", + "0.9284102355", + "0.9250988988", + "0.8884696205", + "0.9070080532", + "0.8647667942", + "0.867445733", + "0.8814361483", + "0.882937258", + "0.8696074129", + "0.8590860188", + "0.8858404511", + "0.871763504", + "0.8317572069", + "0.8391207425", + "1.008688306", + "0.8290217972", + "0.8335661515", + "0.8371699254", + "0.8331173172", + "0.8002352905", + "0.8300439653", + "0.8501032075", + "0.8520959312", + "0.8501783318", + "0.8334952428", + "0.8323353132", + "0.7980989034", + "0.8003747049", + "0.9262580984", + "0.9374524545", + "0.8237392302", + "0.829396642", + "0.8194679504", + "0.7835997698", + "0.8092081667", + "0.7999430522", + "0.7920783044", + "0.791224374", + "0.7987489299", + "0.7927414561", + "0.811810375", + "0.8057340582", + "0.817456409", + "0.8122236332", + "0.799007384", + "0.7870736823", + "0.7967344082", + "0.7925809239", + "0.7984832265", + "0.7905348817", + "0.765974346", + "0.7753873125", + "0.7692188971", + "0.7972500847", + "0.7949451371", + "0.2490998694", + "0.2629309922", + "0.2756231029", + "0.1603217608", + "0.1639456597", + "0.1527325165", + "0.1687829144", + "0.1493328266", + "0.1457561255", + "0.1626731844", + "0.1524741762", + "0.157032948", + "0.1650859697", + "0.0938509184", + "0.0", + "0.1783310143", + "0.154793241", + "0.155110267", + "0.2043032031", + "0.1988106084", + "0.1889159843", + "0.2490930607", + "0.2200019278", + "0.1902051372", + "0.2090201566", + "0.2287859148", + "0.2048956051", + "0.1865989798", + "0.2151121559", + "0.2314173474", + "0.2387737476", + "0.2211719246", + "0.3758295462", + "0.3820008033", + "0.3857184608", + "0.4209805524", + "0.3749921704", + "0.4006679781", + "0.3375790055", + "0.3204605674", + "0.6397864159", + "0.6507751045", + "0.584846395", + "0.5861232714", + "0.5443064235", + "0.5607255945", + "0.5591092604", + "0.5828483898", + "0.5702729286", + "0.5480701089", + "0.7292611146", + "0.7355604502", + "0.7155621448", + "0.7280905907", + "0.726616593", + "0.6950183832", + "0.7048175227", + "0.7537460727", + "0.7891702358", + "0.7639830565", + "0.7446712543", + "0.6935251791", + "0.7053237798", + "0.7050172296", + "0.735833125", + "0.7361908208", + "0.6689082997", + "0.8066809061", + "0.8112645473", + "0.8210081233", + "0.8007696674", + "0.7624649872", + "0.831858484", + "0.8128221605", + "0.8176838487", + "0.7544720023", + "0.7861841157", + "0.7948201744", + "0.8064779286", + "0.7889133891", + "0.7755490735", + "0.7399160919", + "0.7390017195", + "0.7454684093", + "0.821306692", + "0.8014232043", + "0.8768061027", + "0.8308165496", + "0.7851589729", + "0.7913640098", + "0.7963042992", + "0.7909956405", + "0.7851940395", + "0.8126343085", + "0.7947778447", + "0.7867283511", + "0.7777153841", + "0.7996528611", + "0.7941510163", + "0.7957849083", + "0.7597348172", + "0.7618912886", + "0.7350170757", + "0.8182807662", + "0.7940189899", + "0.7793771763", + "0.7596458304", + "0.8953695211", + "0.8986293294", + "0.9265363107", + "0.8811721317", + "0.8852754477", + "0.8993239272", + "0.913040393", + "0.9366796142", + "0.8778749225", + "0.8558887546", + "0.8844949871", + "0.8527456425", + "0.8560594678", + "0.8690267146", + "0.8493813497", + "0.8566436939", + "0.842278841", + "0.8381904121", + "0.9199340448", + "0.9121255104", + "0.8664447009", + "0.8872116636", + "0.8838923929", + "0.9371017524", + "0.8645001067", + "0.8487113298", + "0.8663438567", + "0.8671669724", + "0.8685968346", + "0.8940178046", + "0.905942454", + "0.9644064742", + "0.9677928684", + "0.9508385459", + "0.9360706836", + "0.9168445507", + "0.8859786714", + "1.2472607332", + "1.2717012097", + "1.2355459312", + "1.2461965359", + "1.2234410014", + "1.2096893805", + "1.300037766", + "1.3288819511", + "1.3299998733", + "1.2542690087", + "1.2518011334", + "1.251867849", + "1.2456579548", + "1.2637451634", + "1.2397623076", + "1.2156144771", + "1.1784113672", + "1.1865543648", + "1.1647357862", + "1.1854674357", + "1.1437518654", + "1.1582393983", + "1.1598918245", + "1.1655076655", + "1.1580148501", + "1.157549451", + "1.1548103031", + "1.145112676", + "1.1628198983", + "1.1429662627", + "1.1454134136", + "1.1411535792", + "1.1558120262", + "1.1749121283", + "1.1182100096", + "1.1406107838", + "1.1486484146", + "1.147790505", + "1.1310471596", + "1.1202693201", + "1.1204004778", + "1.1250931254", + "1.1284098992", + "1.1611305112", + "1.1923325997", + "1.1872606218", + "1.1112023513", + "1.1120936363", + "1.1073453246", + "1.1133945747", + "1.0344262567", + "0.9313829396", + "0.9450154526", + "1.1842425543", + "1.3920931801", + "1.1457337432", + "1.2062490287", + "1.2076409777", + "1.1835043703", + "1.1911828735", + "1.2139032645", + "1.2037047966", + "1.2211138926", + "1.222267954", + "1.218830624", + "1.2184916656", + "1.2452761379", + "1.2152336202", + "1.2188728987", + "1.2226974802", + "1.222917014", + "1.1862696496", + "1.1911459648", + "1.2121920049", + "1.1926441919", + "1.199984939", + "1.1518963536", + "1.1443444479", + "1.1750570289", + "1.1712327819", + "1.1835818741", + "1.1884395099", + "1.1830841556", + "1.1826475854", + "1.1736987142", + "1.1857151344", + "1.1633643931", + "1.1793129117", + "1.1880256508", + "1.1837403689", + "1.1919379353", + "1.2071941568", + "1.2026635043", + "1.1437578003", + "1.1815083105", + "1.1720097071", + "1.1341037784", + "1.4042791059", + "1.4369157637", + "1.4023923244", + "1.4110711779", + "1.3849616341", + "1.1987517942", + "1.0520220223", + "1.044054597", + "1.0973897081", + "1.0606617934", + "1.0657022845", + "1.0634716864", + "1.0511252657", + "1.0560678668", + "1.0093175823", + "1.0646130584", + "1.0589753071", + "1.10446073", + "1.0825559082", + "1.074910672", + "1.062240798", + "0.9751296627", + "0.9790472788", + "1.087202004", + "1.0697580077", + "1.0737053202", + "1.0685176692", + "1.0411015364", + "1.1301769014", + "1.0777464675", + "1.0777928424", + "1.1748417123", + "1.2053886751", + "1.1608004888", + "1.1677928602", + "1.1405565154", + "1.1459443136", + "1.1451114357", + "1.1372781201", + "1.0798987382", + "1.2285124905", + "1.282677458", + "1.2497003813", + "1.2388987804", + "1.246204695", + "1.1867998564", + "1.1994006873", + "1.2064583003", + "1.201696268", + "1.2510593095", + "1.2570461817", + "1.2664450308", + "1.278536411", + "1.213712451", + "1.2555011721", + "1.2536327558", + "1.1800471936", + "1.1781749226", + "1.2063706963", + "1.1994740654", + "1.2512928167", + "1.1549687055", + "1.1002980471", + "1.118111778", + "1.0808563822", + "1.1132561097", + "1.1964868705", + "1.2097292267", + "1.2246454541", + "1.2398818613", + "1.1536504568", + "1.0860395059", + "1.1464222238", + "1.2191265181", + "1.0649610129", + "1.093819615", + "1.0999418636", + "1.1567312355", + "1.1100613536", + "1.1165749994", + "1.1213573454", + "1.1026059847", + "1.1288525316", + "1.1961302336", + "1.2026843978", + "1.2304699128", + "1.243472903", + "1.240093203", + "1.1187301226", + "1.1457744297", + "1.1090634742", + "1.1144806927", + "1.1664653046", + "1.1987785259", + "1.1907139043", + "1.1991293677", + "1.186224025", + "1.173330939", + "1.177877427", + "1.2315027189", + "1.2868885403", + "1.3836458615", + "1.2967702794", + "1.2961399745", + "1.3239657262", + "1.2613533665", + "1.3281994858", + "1.3232455593", + "1.2882204586", + "1.2974839243", + "1.1927700432", + "1.4843271085", + "1.4104817998", + "1.4196708202", + "1.3471804479", + "1.3594712895", + "1.34908619", + "1.4512897991", + "1.3785214369", + "1.4167090518", + "1.410791926", + "1.388676408", + "1.3179036215", + "1.320648465", + "1.3653070151", + "1.3590677735", + "1.3636565741", + "1.3290549863", + "1.3206359618", + "1.3125991204", + "1.3722482419", + "1.331076886", + "1.3387455884", + "1.3092664172", + "1.2620133369", + "1.3655759892", + "1.3036601003", + "1.2967934556", + "1.3170216875", + "1.3931659451", + "1.4054375037", + "1.4140263669", + "1.4091385983", + "1.4029338719", + "1.3927740771", + "1.3917921883", + "1.3851391064", + "1.5033339839", + "1.484217259", + "1.3581523789", + "1.4074377219", + "1.40736504", + "1.4010058116", + "1.4035185821", + "1.4696010822", + "1.4641510598", + "1.4190295204", + "1.4049941768", + "1.4023412747", + "1.3908451907", + "1.4095785844", + "1.3780549602", + "1.3690108099", + "1.36484925", + "1.3804099439", + "1.3758802548", + "1.3667783071", + "1.3733482215", + "1.3880235353", + "1.4027741078", + "1.4117084746", + "1.4381731623", + "1.3897037698", + "1.4137155375", + "1.4246405611", + "1.3683289157", + "1.4226486548", + "1.3975808025", + "1.3735182134", + "1.3730194426", + "1.3807127597", + "1.37467765", + "1.3478097269", + "1.355754785", + "1.3588969944", + "1.3301772789" + ] + }, + "essential_compounds": [ + "3dhcdchol", + "3dhchol", + "4abut", + "4hbz", + "ac", + "adn", + "akg", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_D", + "arab_L", + "arg_L", + "asn_L", + "aso3", + "aso4", + "asp_L", + "btn", + "ca2", + "cd2", + "cellb", + "cgly", + "chtbs", + "cl", + "co2", + "cobalt2", + "crn", + "ctbt", + "cu2", + "cys_L", + "ddca", + "dms", + "dmso", + "fe2", + "fe3", + "fol", + "for", + "gbbtn", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyc3p", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hg2", + "his_L", + "icdchol", + "isochol", + "k", + "lac_L", + "leu_L", + "lys_L", + "mal_L", + "malt", + "met_L", + "metala", + "mg2", + "mn2", + "na1", + "nac", + "nh4", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "pnto_R", + "ppi", + "pro_L", + "pydx", + "ribflv", + "sheme", + "so3", + "so4", + "spmd", + "succ", + "taur", + "tet", + "thm", + "thr_L", + "tma", + "tmao", + "trp_L", + "tsul", + "ttdca", + "tyr_L", + "ura", + "xan", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_407.json b/agents/agora/agent_407.json new file mode 100644 index 0000000000000000000000000000000000000000..8d983042dcb37e84fd3080e8f6f64d199bf96894 --- /dev/null +++ b/agents/agora/agent_407.json @@ -0,0 +1,960 @@ +{ + "id": 407, + "name": "Faecalibacterium_prausnitzii_SL3_3", + "N_R": 1115, + "taxonomy": { + "k": 407, + "tax_distance": [ + "2.5651589825", + "2.1472811152", + "2.1405818861", + "2.3671645932", + "2.0485645193", + "2.0936932062", + "2.0749879084", + "2.0720453141", + "2.1360269124", + "2.0543828205", + "2.0714475239", + "2.1795698377", + "2.152587616", + "2.3806015739", + "2.428958391", + "2.4592909016", + "2.3396405037", + "2.3485646205", + "2.3840390961", + "1.9170234121", + "1.8523524354", + "1.6018311767", + "1.5351807443", + "1.4137010676", + "1.2395217888", + "1.2337105807", + "1.2303560093", + "1.2327170637", + "1.2169507737", + "1.2082650108", + "1.2107159169", + "1.312301853", + "1.3218396558", + "1.3182057458", + "1.3339018144", + "1.3024002344", + "1.3251461785", + "1.34345209", + "1.324420127", + "1.617360786", + "1.3622024073", + "1.2808413513", + "1.2876066575", + "1.2902142376", + "1.2869824956", + "1.2899558773", + "1.2850572724", + "1.2854423077", + "1.2796273969", + "1.2716662073", + "1.2132440293", + "1.2187564293", + "1.213015596", + "1.1851693254", + "1.1916910695", + "1.2207930667", + "1.1947161799", + "1.1927001523", + "1.2134545579", + "1.2111146632", + "1.1943728357", + "1.2197236073", + "1.2217983971", + "1.2204675039", + "1.2348587214", + "1.2365808833", + "1.2365808833", + "1.243226466", + "1.243226466", + "1.243226466", + "1.243226466", + "1.243226466", + "1.243226466", + "1.243226466", + "1.243226466", + "1.2391471033", + "1.2394928405", + "1.2330611329", + "1.2435536075", + "1.2426483656", + "1.238750196", + "1.2370075224", + "1.2383260922", + "1.2348242117", + "1.2297464634", + "1.233091589", + "1.2385373558", + "1.2339991641", + "1.218999208", + "1.2273703229", + "1.2220949377", + "1.2382428787", + "1.2335455895", + "1.2376791588", + "1.2156394482", + "1.2102392644", + "1.2243056195", + "1.2349660285", + "1.2517630715", + "1.2341727813", + "1.2241776628", + "1.2228598452", + "1.2036094653", + "1.2164879543", + "1.2753603993", + "1.2702084876", + "1.3371047449", + "1.3032654889", + "1.2404568481", + "1.2441831049", + "1.246916572", + "1.2398124905", + "1.2398124905", + "1.2211885883", + "1.2240927346", + "1.2159922179", + "1.2515179166", + "1.1882953671", + "1.1662044537", + "1.18406881", + "1.1707978147", + "1.1712234071", + "1.2894751207", + "1.2966655715", + "1.3181065844", + "1.1227028687", + "1.292451822", + "1.2991270561", + "1.2837639638", + "1.303397969", + "1.292585055", + "1.2976515413", + "1.2891552637", + "1.2822051586", + "1.2730754615", + "1.2737335819", + "1.2926475051", + "1.2657660612", + "1.2478018507", + "1.3416897916", + "1.3430636653", + "1.312375253", + "1.3699549436", + "1.3075335311", + "1.3130274739", + "1.3100664488", + "1.3347734339", + "1.3239509851", + "1.2321079131", + "1.2031978236", + "1.1643867636", + "1.1422854704", + "1.1336436641", + "1.128523473", + "1.1653950987", + "1.1678902246", + "1.1397021557", + "1.1280642018", + "1.1316507108", + "1.2006038216", + "1.2073122037", + "1.1769412571", + "1.3008593303", + "1.2953444349", + "1.2976854861", + "1.2554085599", + "1.2515545804", + "1.2894611541", + "1.2812843398", + "1.2500423173", + "1.251601676", + "1.2696216697", + "1.226316875", + "1.215480746", + "1.2166412985", + "1.2501276399", + "1.2383040872", + "1.21967723", + "1.2386658523", + "1.2199978536", + "1.2338127958", + "1.2280302248", + "1.2269618428", + "1.2475202945", + "1.2433077471", + "1.2261887017", + "1.2604170757", + "1.245182834", + "1.250295143", + "1.2496884575", + "1.2140868271", + "1.2100666189", + "1.1945992673", + "1.2129457725", + "1.2098793977", + "1.1841878039", + "1.167175056", + "1.1618674051", + "1.1666091897", + "1.165750579", + "1.1985165389", + "1.1975358771", + "1.2215756747", + "1.1994666477", + "1.1599586557", + "1.1631230665", + "1.1881849585", + "1.1844760744", + "1.1602254577", + "1.1527681078", + "1.1551213671", + "1.164298902", + "1.0900648051", + "1.1326679059", + "1.1169641352", + "1.110802372", + "1.1045221272", + "1.0924195096", + "1.095589849", + "1.1377619384", + "1.5721537696", + "1.6569319687", + "1.5694673936", + "1.5546496815", + "1.5329770487", + "1.0866547076", + "1.1054591136", + "1.1553919787", + "1.1170312267", + "1.1322684297", + "1.2458055673", + "1.1995761744", + "1.2212278486", + "1.1798945025", + "1.093232814", + "1.1056151569", + "1.1121062281", + "1.1725327649", + "1.1637332323", + "1.1618145013", + "1.1878167824", + "1.1851243468", + "1.1763562912", + "1.2078769148", + "1.2159603793", + "1.2001491061", + "1.1735308563", + "1.1681852832", + "1.1735959591", + "1.1623028179", + "1.1072719231", + "1.112356745", + "1.1116015215", + "1.158413106", + "1.1138428266", + "1.0962946282", + "1.1737194344", + "1.1269867946", + "1.1020693321", + "1.1151048233", + "1.0857203097", + "1.0509339515", + "1.1350219873", + "1.1373757737", + "1.1421529834", + "1.1474985814", + "1.1131975556", + "1.1738533049", + "1.1806894203", + "1.1772004178", + "1.1898654832", + "1.1759494404", + "1.1557335342", + "1.1471327655", + "1.1937846337", + "1.2130629064", + "1.2637419263", + "1.1066643101", + "1.075837016", + "1.1688427299", + "1.16782603", + "1.1550469543", + "1.1119716672", + "1.1767949814", + "1.1677382292", + "1.1703904915", + "1.2015297968", + "1.1431886636", + "1.1284549608", + "1.1100798325", + "1.1383954712", + "1.1099025459", + "1.1650484632", + "1.1960418632", + "1.218674711", + "1.175358534", + "1.1467047455", + "1.1669516422", + "1.1467052538", + "1.1330912789", + "1.097836208", + "1.1327857675", + "1.0638752916", + "1.0811406626", + "1.1639493736", + "1.1523147128", + "1.1494162865", + "1.1595705937", + "1.1679334792", + "1.157256118", + "1.1691966856", + "1.1576632281", + "1.1552017215", + "1.1236125899", + "1.1296074957", + "1.1358654929", + "1.1230199475", + "1.1565585844", + "1.0887877961", + "1.1472857364", + "1.1444305038", + "1.1346710363", + "1.1338961599", + "1.1600382847", + "1.1366470479", + "1.1063409099", + "1.0210128105", + "1.0328173553", + "1.0338346312", + "0.977857854", + "0.9899847745", + "0.9866963725", + "0.9680221734", + "0.9767041251", + "0.9726633382", + "0.9627001884", + "0.988501215", + "0.9851898783", + "0.9485606", + "0.9670990327", + "0.9248577737", + "0.9275367125", + "0.9415271278", + "0.9430282375", + "0.9296983924", + "0.9191769983", + "0.9459314306", + "0.9318544835", + "0.8918481864", + "0.899211722", + "1.0687792855", + "0.8891127767", + "0.893657131", + "0.8972609049", + "0.8932082967", + "0.86032627", + "0.8901349448", + "0.910194187", + "0.9121869107", + "0.9102693113", + "0.8935862223", + "0.8924262927", + "0.8581898829", + "0.8604656844", + "0.9863490779", + "0.997543434", + "0.8838302097", + "0.8894876215", + "0.8795589299", + "0.8436907493", + "0.8692991462", + "0.8600340317", + "0.8521692839", + "0.8513153535", + "0.8588399094", + "0.8528324356", + "0.8719013545", + "0.8658250377", + "0.8775473885", + "0.8723146127", + "0.8590983635", + "0.8471646618", + "0.8568253877", + "0.8526719034", + "0.858574206", + "0.8506258612", + "0.8260653255", + "0.835478292", + "0.8293098766", + "0.8573410642", + "0.8550361166", + "0.3091908489", + "0.3230219717", + "0.3357140824", + "0.2204127403", + "0.2240366392", + "0.212823496", + "0.2288738939", + "0.2094238061", + "0.205847105", + "0.2227641639", + "0.2125651557", + "0.2171239275", + "0.2251769492", + "0.1865062209", + "0.1783310143", + "0.0", + "0.1859870537", + "0.1863040797", + "0.2643941826", + "0.2589015879", + "0.2490069638", + "0.3091840402", + "0.2800929073", + "0.2502961167", + "0.2691111361", + "0.2888768943", + "0.2649865846", + "0.2466899593", + "0.2752031354", + "0.2915083269", + "0.2988647271", + "0.2812629041", + "0.4359205257", + "0.4420917828", + "0.4458094403", + "0.4810715319", + "0.4350831499", + "0.4607589576", + "0.397669985", + "0.3805515469", + "0.6998773954", + "0.710866084", + "0.6449373745", + "0.6462142509", + "0.604397403", + "0.620816574", + "0.6192002399", + "0.6429393693", + "0.6303639081", + "0.6081610884", + "0.7893520941", + "0.7956514297", + "0.7756531243", + "0.7881815702", + "0.7867075725", + "0.7551093627", + "0.7649085022", + "0.8138370522", + "0.8492612153", + "0.824074036", + "0.8047622338", + "0.7536161586", + "0.7654147593", + "0.7651082091", + "0.7959241045", + "0.7962818003", + "0.7289992792", + "0.8667718856", + "0.8713555268", + "0.8810991028", + "0.8608606469", + "0.8225559667", + "0.8919494635", + "0.87291314", + "0.8777748282", + "0.8145629818", + "0.8462750952", + "0.8549111539", + "0.8665689081", + "0.8490043686", + "0.835640053", + "0.8000070714", + "0.799092699", + "0.8055593888", + "0.8813976715", + "0.8615141838", + "0.9368970822", + "0.8909075291", + "0.8452499524", + "0.8514549893", + "0.8563952787", + "0.85108662", + "0.845285019", + "0.872725288", + "0.8548688242", + "0.8468193306", + "0.8378063636", + "0.8597438406", + "0.8542419958", + "0.8558758878", + "0.8198257967", + "0.8219822681", + "0.7951080552", + "0.8783717457", + "0.8541099694", + "0.8394681558", + "0.8197368099", + "0.9554605006", + "0.9587203089", + "0.9866272902", + "0.9412631112", + "0.9453664272", + "0.9594149067", + "0.9731313725", + "0.9967705937", + "0.937965902", + "0.9159797341", + "0.9445859666", + "0.912836622", + "0.9161504473", + "0.9291176941", + "0.9094723292", + "0.9167346734", + "0.9023698205", + "0.8982813916", + "0.9800250243", + "0.9722164899", + "0.9265356804", + "0.9473026431", + "0.9439833724", + "0.9971927319", + "0.9245910862", + "0.9088023093", + "0.9264348362", + "0.9272579519", + "0.9286878141", + "0.9541087841", + "0.9660334335", + "1.0244974537", + "1.0278838479", + "1.0109295254", + "0.9961616631", + "0.9769355302", + "0.9460696509", + "1.3073517127", + "1.3317921892", + "1.2956369107", + "1.3062875154", + "1.2835319809", + "1.26978036", + "1.3601287455", + "1.3889729306", + "1.3900908528", + "1.3143599882", + "1.3118921129", + "1.3119588285", + "1.3057489343", + "1.3238361429", + "1.2998532871", + "1.2757054566", + "1.2385023467", + "1.2466453443", + "1.2248267657", + "1.2455584152", + "1.2038428449", + "1.2183303778", + "1.219982804", + "1.225598645", + "1.2181058296", + "1.2176404305", + "1.2149012826", + "1.2052036555", + "1.2229108778", + "1.2030572422", + "1.2055043931", + "1.2012445587", + "1.2159030057", + "1.2350031078", + "1.1783009891", + "1.2007017633", + "1.2087393941", + "1.2078814845", + "1.1911381391", + "1.1803602996", + "1.1804914573", + "1.1851841049", + "1.1885008787", + "1.2212214907", + "1.2524235792", + "1.2473516013", + "1.1712933308", + "1.1721846158", + "1.1674363041", + "1.1734855542", + "1.0945172362", + "0.9914739191", + "1.0051064321", + "1.2443335338", + "1.4521841596", + "1.2058247227", + "1.2663400082", + "1.2677319572", + "1.2435953498", + "1.251273853", + "1.273994244", + "1.2637957761", + "1.2812048721", + "1.2823589335", + "1.2789216035", + "1.2785826451", + "1.3053671174", + "1.2753245997", + "1.2789638782", + "1.2827884597", + "1.2830079935", + "1.2463606291", + "1.2512369443", + "1.2722829844", + "1.2527351714", + "1.2600759185", + "1.2119873331", + "1.2044354274", + "1.2351480084", + "1.2313237614", + "1.2436728536", + "1.2485304894", + "1.2431751351", + "1.2427385649", + "1.2337896937", + "1.2458061139", + "1.2234553726", + "1.2394038912", + "1.2481166303", + "1.2438313484", + "1.2520289148", + "1.2672851363", + "1.2627544838", + "1.2038487798", + "1.24159929", + "1.2321006866", + "1.1941947579", + "1.4643700854", + "1.4970067432", + "1.4624833039", + "1.4711621574", + "1.4450526136", + "1.2588427737", + "1.1121130018", + "1.1041455765", + "1.1574806876", + "1.1207527729", + "1.125793264", + "1.1235626659", + "1.1112162452", + "1.1161588463", + "1.0694085618", + "1.1247040379", + "1.1190662866", + "1.1645517095", + "1.1426468877", + "1.1350016515", + "1.1223317775", + "1.0352206422", + "1.0391382583", + "1.1472929835", + "1.1298489872", + "1.1337962997", + "1.1286086487", + "1.1011925159", + "1.1902678809", + "1.137837447", + "1.1378838219", + "1.2349326918", + "1.2654796546", + "1.2208914683", + "1.2278838397", + "1.2006474949", + "1.2060352931", + "1.2052024152", + "1.1973690996", + "1.1399897177", + "1.28860347", + "1.3427684375", + "1.3097913608", + "1.2989897599", + "1.3062956745", + "1.2468908359", + "1.2594916668", + "1.2665492798", + "1.2617872475", + "1.311150289", + "1.3171371612", + "1.3265360103", + "1.3386273905", + "1.2738034305", + "1.3155921516", + "1.3137237353", + "1.2401381731", + "1.2382659021", + "1.2664616758", + "1.2595650449", + "1.3113837962", + "1.215059685", + "1.1603890266", + "1.1782027575", + "1.1409473617", + "1.1733470892", + "1.25657785", + "1.2698202062", + "1.2847364336", + "1.2999728408", + "1.2137414363", + "1.1461304854", + "1.2065132033", + "1.2792174976", + "1.1250519924", + "1.1539105945", + "1.1600328431", + "1.216822215", + "1.1701523331", + "1.1766659789", + "1.1814483249", + "1.1626969642", + "1.1889435111", + "1.2562212131", + "1.2627753773", + "1.2905608923", + "1.3035638825", + "1.3001841825", + "1.1788211021", + "1.2058654092", + "1.1691544537", + "1.1745716722", + "1.2265562841", + "1.2588695054", + "1.2508048838", + "1.2592203472", + "1.2463150045", + "1.2334219185", + "1.2379684065", + "1.2915936984", + "1.3469795198", + "1.443736841", + "1.3568612589", + "1.356230954", + "1.3840567057", + "1.321444346", + "1.3882904653", + "1.3833365388", + "1.3483114381", + "1.3575749038", + "1.2528610227", + "1.544418088", + "1.4705727793", + "1.4797617997", + "1.4072714274", + "1.419562269", + "1.4091771695", + "1.5113807786", + "1.4386124164", + "1.4768000313", + "1.4708829055", + "1.4487673875", + "1.377994601", + "1.3807394445", + "1.4253979946", + "1.419158753", + "1.4237475536", + "1.3891459658", + "1.3807269413", + "1.3726900999", + "1.4323392214", + "1.3911678655", + "1.3988365679", + "1.3693573967", + "1.3221043164", + "1.4256669687", + "1.3637510798", + "1.3568844351", + "1.377112667", + "1.4532569246", + "1.4655284832", + "1.4741173464", + "1.4692295778", + "1.4630248514", + "1.4528650566", + "1.4518831678", + "1.4452300859", + "1.5634249634", + "1.5443082385", + "1.4182433584", + "1.4675287014", + "1.4674560195", + "1.4610967911", + "1.4636095616", + "1.5296920617", + "1.5242420393", + "1.4791204999", + "1.4650851563", + "1.4624322542", + "1.4509361702", + "1.4696695639", + "1.4381459397", + "1.4291017894", + "1.4249402295", + "1.4405009234", + "1.4359712343", + "1.4268692866", + "1.433439201", + "1.4481145148", + "1.4628650873", + "1.4717994541", + "1.4982641418", + "1.4497947493", + "1.473806517", + "1.4847315406", + "1.4284198952", + "1.4827396343", + "1.457671782", + "1.4336091929", + "1.4331104221", + "1.4408037392", + "1.4347686295", + "1.4079007064", + "1.4158457645", + "1.4189879739", + "1.3902682584" + ] + }, + "essential_compounds": [ + "12dgr180", + "26dap_M", + "2dmmq8", + "2obut", + "ac", + "acald", + "acgam", + "ade", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_L", + "arbt", + "arsenb", + "asn_L", + "asp_L", + "btn", + "ca2", + "cd2", + "cellb", + "cgly", + "cl", + "co2", + "cobalt2", + "cro4", + "csn", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dextrin", + "dgsn", + "drib", + "etoh", + "fe2", + "fe3", + "fol", + "for", + "fru", + "gal", + "galt", + "gam", + "gcald", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gua", + "h2o", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "k", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "malt", + "malthx", + "malttr", + "man", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mqn8", + "na1", + "nac", + "nh4", + "o2", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "pnto_R", + "ppa", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "q8", + "rib_D", + "ribflv", + "salcn", + "sbt_D", + "ser_L", + "sheme", + "so4", + "spmd", + "strch1", + "strch2", + "succ", + "sucr", + "thm", + "thr_L", + "thymd", + "tre", + "trp_L", + "tyr_L", + "ura", + "uri", + "val_L", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_408.json b/agents/agora/agent_408.json new file mode 100644 index 0000000000000000000000000000000000000000..4c10fece8048a3cb647589a827c02c982f9dc28d --- /dev/null +++ b/agents/agora/agent_408.json @@ -0,0 +1,925 @@ +{ + "id": 408, + "name": "Filifactor_alocis_ATCC_35896", + "N_R": 850, + "taxonomy": { + "k": 408, + "tax_distance": [ + "2.5416212092", + "2.1237433419", + "2.1170441128", + "2.3436268199", + "2.025026746", + "2.0701554329", + "2.0514501351", + "2.0485075408", + "2.1124891391", + "2.0308450472", + "2.0479097506", + "2.1560320644", + "2.1290498427", + "2.3570638006", + "2.4054206177", + "2.4357531283", + "2.3161027304", + "2.3250268472", + "2.3605013228", + "1.8934856388", + "1.8288146621", + "1.5782934034", + "1.511642971", + "1.3901632943", + "1.2159840155", + "1.2101728074", + "1.206818236", + "1.2091792904", + "1.1934130004", + "1.1847272375", + "1.1871781436", + "1.2887640797", + "1.2983018825", + "1.2946679725", + "1.3103640411", + "1.2788624611", + "1.3016084052", + "1.3199143167", + "1.3008823537", + "1.5938230127", + "1.338664634", + "1.257303578", + "1.2640688842", + "1.2666764643", + "1.2634447223", + "1.266418104", + "1.2615194991", + "1.2619045344", + "1.2560896236", + "1.248128434", + "1.189706256", + "1.195218656", + "1.1894778227", + "1.1616315521", + "1.1681532962", + "1.1972552934", + "1.1711784066", + "1.169162379", + "1.1899167846", + "1.1875768899", + "1.1708350624", + "1.196185834", + "1.1982606238", + "1.1969297306", + "1.2113209481", + "1.21304311", + "1.21304311", + "1.2196886927", + "1.2196886927", + "1.2196886927", + "1.2196886927", + "1.2196886927", + "1.2196886927", + "1.2196886927", + "1.2196886927", + "1.21560933", + "1.2159550672", + "1.2095233596", + "1.2200158342", + "1.2191105923", + "1.2152124227", + "1.2134697491", + "1.2147883189", + "1.2112864384", + "1.2062086901", + "1.2095538157", + "1.2149995825", + "1.2104613908", + "1.1954614347", + "1.2038325496", + "1.1985571644", + "1.2147051054", + "1.2100078162", + "1.2141413855", + "1.1921016749", + "1.1867014911", + "1.2007678462", + "1.2114282552", + "1.2282252982", + "1.210635008", + "1.2006398895", + "1.1993220719", + "1.180071692", + "1.192950181", + "1.251822626", + "1.2466707143", + "1.3135669716", + "1.2797277156", + "1.2169190748", + "1.2206453316", + "1.2233787987", + "1.2162747172", + "1.2162747172", + "1.197650815", + "1.2005549613", + "1.1924544446", + "1.2279801433", + "1.1647575938", + "1.1426666804", + "1.1605310367", + "1.1472600414", + "1.1476856338", + "1.2659373474", + "1.2731277982", + "1.2945688111", + "1.0991650954", + "1.2689140487", + "1.2755892828", + "1.2602261905", + "1.2798601957", + "1.2690472817", + "1.274113768", + "1.2656174904", + "1.2586673853", + "1.2495376882", + "1.2501958086", + "1.2691097318", + "1.2422282879", + "1.2242640774", + "1.3181520183", + "1.319525892", + "1.2888374797", + "1.3464171703", + "1.2839957578", + "1.2894897006", + "1.2865286755", + "1.3112356606", + "1.3004132118", + "1.2085701398", + "1.1796600503", + "1.1408489903", + "1.1187476971", + "1.1101058908", + "1.1049856997", + "1.1418573254", + "1.1443524513", + "1.1161643824", + "1.1045264285", + "1.1081129375", + "1.1770660483", + "1.1837744304", + "1.1534034838", + "1.277321557", + "1.2718066616", + "1.2741477128", + "1.2318707866", + "1.2280168071", + "1.2659233808", + "1.2577465665", + "1.226504544", + "1.2280639027", + "1.2460838964", + "1.2027791017", + "1.1919429727", + "1.1931035252", + "1.2265898666", + "1.2147663139", + "1.1961394567", + "1.215128079", + "1.1964600803", + "1.2102750225", + "1.2044924515", + "1.2034240695", + "1.2239825212", + "1.2197699738", + "1.2026509284", + "1.2368793024", + "1.2216450607", + "1.2267573697", + "1.2261506842", + "1.1905490538", + "1.1865288456", + "1.171061494", + "1.1894079992", + "1.1863416244", + "1.1606500306", + "1.1436372827", + "1.1383296318", + "1.1430714164", + "1.1422128057", + "1.1749787656", + "1.1739981038", + "1.1980379014", + "1.1759288744", + "1.1364208824", + "1.1395852932", + "1.1646471852", + "1.1609383011", + "1.1366876844", + "1.1292303345", + "1.1315835938", + "1.1407611287", + "1.0665270318", + "1.1091301326", + "1.0934263619", + "1.0872645987", + "1.0809843539", + "1.0688817363", + "1.0720520757", + "1.1142241651", + "1.5486159963", + "1.6333941954", + "1.5459296203", + "1.5311119082", + "1.5094392754", + "1.0631169343", + "1.0819213403", + "1.1318542054", + "1.0934934534", + "1.1087306564", + "1.222267794", + "1.1760384011", + "1.1976900753", + "1.1563567292", + "1.0696950407", + "1.0820773836", + "1.0885684548", + "1.1489949916", + "1.140195459", + "1.138276728", + "1.1642790091", + "1.1615865735", + "1.1528185179", + "1.1843391415", + "1.192422606", + "1.1766113328", + "1.149993083", + "1.1446475099", + "1.1500581858", + "1.1387650446", + "1.0837341498", + "1.0888189717", + "1.0880637482", + "1.1348753327", + "1.0903050533", + "1.0727568549", + "1.1501816611", + "1.1034490213", + "1.0785315588", + "1.09156705", + "1.0621825364", + "1.0273961782", + "1.111484214", + "1.1138380004", + "1.1186152101", + "1.1239608081", + "1.0896597823", + "1.1503155316", + "1.157151647", + "1.1536626445", + "1.1663277099", + "1.1524116671", + "1.1321957609", + "1.1235949922", + "1.1702468604", + "1.1895251331", + "1.240204153", + "1.0831265368", + "1.0522992427", + "1.1453049566", + "1.1442882567", + "1.131509181", + "1.0884338939", + "1.1532572081", + "1.1442004559", + "1.1468527182", + "1.1779920235", + "1.1196508903", + "1.1049171875", + "1.0865420592", + "1.1148576979", + "1.0863647726", + "1.1415106899", + "1.1725040899", + "1.1951369377", + "1.1518207607", + "1.1231669722", + "1.1434138689", + "1.1231674805", + "1.1095535056", + "1.0742984347", + "1.1092479942", + "1.0403375183", + "1.0576028893", + "1.1404116003", + "1.1287769395", + "1.1258785132", + "1.1360328204", + "1.1443957059", + "1.1337183447", + "1.1456589123", + "1.1341254548", + "1.1316639482", + "1.1000748166", + "1.1060697224", + "1.1123277196", + "1.0994821742", + "1.1330208111", + "1.0652500228", + "1.1237479631", + "1.1208927305", + "1.111133263", + "1.1103583866", + "1.1365005114", + "1.1131092746", + "1.0828031366", + "0.9974750372", + "1.009279582", + "1.0102968579", + "0.9543200807", + "0.9664470012", + "0.9631585992", + "0.9444844001", + "0.9531663518", + "0.9491255649", + "0.9391624151", + "0.9649634417", + "0.961652105", + "0.9250228267", + "0.9435612594", + "0.9013200004", + "0.9039989392", + "0.9179893545", + "0.9194904642", + "0.9061606191", + "0.895639225", + "0.9223936573", + "0.9083167102", + "0.8683104131", + "0.8756739487", + "1.0452415122", + "0.8655750034", + "0.8701193577", + "0.8737231316", + "0.8696705234", + "0.8367884967", + "0.8665971715", + "0.8866564137", + "0.8886491374", + "0.886731538", + "0.870048449", + "0.8688885194", + "0.8346521096", + "0.8369279111", + "0.9628113046", + "0.9740056607", + "0.8602924364", + "0.8659498482", + "0.8560211566", + "0.820152976", + "0.8457613729", + "0.8364962584", + "0.8286315106", + "0.8277775802", + "0.8353021361", + "0.8292946623", + "0.8483635812", + "0.8422872644", + "0.8540096152", + "0.8487768394", + "0.8355605902", + "0.8236268885", + "0.8332876144", + "0.8291341301", + "0.8350364327", + "0.8270880879", + "0.8025275522", + "0.8119405187", + "0.8057721033", + "0.8338032909", + "0.8314983433", + "0.2856530756", + "0.2994841984", + "0.3121763091", + "0.196874967", + "0.2004988659", + "0.1892857227", + "0.2053361206", + "0.1858860328", + "0.1823093317", + "0.1992263906", + "0.1890273824", + "0.1935861542", + "0.2016391759", + "0.1629684476", + "0.154793241", + "0.1859870537", + "0.0", + "0.0447197974", + "0.2408564093", + "0.2353638146", + "0.2254691905", + "0.2856462669", + "0.256555134", + "0.2267583434", + "0.2455733628", + "0.265339121", + "0.2414488113", + "0.223152186", + "0.2516653621", + "0.2679705536", + "0.2753269538", + "0.2577251308", + "0.4123827524", + "0.4185540095", + "0.422271667", + "0.4575337586", + "0.4115453766", + "0.4372211843", + "0.3741322117", + "0.3570137736", + "0.6763396221", + "0.6873283107", + "0.6213996012", + "0.6226764776", + "0.5808596297", + "0.5972788007", + "0.5956624666", + "0.619401596", + "0.6068261348", + "0.5846233151", + "0.7658143208", + "0.7721136564", + "0.752115351", + "0.7646437969", + "0.7631697992", + "0.7315715894", + "0.7413707289", + "0.7902992789", + "0.825723442", + "0.8005362627", + "0.7812244605", + "0.7300783853", + "0.741876986", + "0.7415704358", + "0.7723863312", + "0.772744027", + "0.7054615059", + "0.8432341123", + "0.8478177535", + "0.8575613295", + "0.8373228736", + "0.7990181934", + "0.8684116902", + "0.8493753667", + "0.8542370549", + "0.7910252085", + "0.8227373219", + "0.8313733806", + "0.8430311348", + "0.8254665953", + "0.8121022797", + "0.7764692981", + "0.7755549257", + "0.7820216155", + "0.8578598982", + "0.8379764105", + "0.9133593089", + "0.8673697558", + "0.8217121791", + "0.827917216", + "0.8328575054", + "0.8275488467", + "0.8217472457", + "0.8491875147", + "0.8313310509", + "0.8232815573", + "0.8142685903", + "0.8362060673", + "0.8307042225", + "0.8323381145", + "0.7962880234", + "0.7984444948", + "0.7715702819", + "0.8548339724", + "0.8305721961", + "0.8159303825", + "0.7961990366", + "0.9319227273", + "0.9351825356", + "0.9630895169", + "0.9177253379", + "0.9218286539", + "0.9358771334", + "0.9495935992", + "0.9732328204", + "0.9144281287", + "0.8924419608", + "0.9210481933", + "0.8892988487", + "0.892612674", + "0.9055799208", + "0.8859345559", + "0.8931969001", + "0.8788320472", + "0.8747436183", + "0.956487251", + "0.9486787166", + "0.9029979071", + "0.9237648698", + "0.9204455991", + "0.9736549586", + "0.9010533129", + "0.885264536", + "0.9028970629", + "0.9037201786", + "0.9051500408", + "0.9305710108", + "0.9424956602", + "1.0009596804", + "1.0043460746", + "0.9873917521", + "0.9726238898", + "0.9533977569", + "0.9225318776", + "1.2838139394", + "1.3082544159", + "1.2720991374", + "1.2827497421", + "1.2599942076", + "1.2462425867", + "1.3365909722", + "1.3654351573", + "1.3665530795", + "1.2908222149", + "1.2883543396", + "1.2884210552", + "1.282211161", + "1.3002983696", + "1.2763155138", + "1.2521676833", + "1.2149645734", + "1.223107571", + "1.2012889924", + "1.2220206419", + "1.1803050716", + "1.1947926045", + "1.1964450307", + "1.2020608717", + "1.1945680563", + "1.1941026572", + "1.1913635093", + "1.1816658822", + "1.1993731045", + "1.1795194689", + "1.1819666198", + "1.1777067854", + "1.1923652324", + "1.2114653345", + "1.1547632158", + "1.17716399", + "1.1852016208", + "1.1843437112", + "1.1676003658", + "1.1568225263", + "1.156953684", + "1.1616463316", + "1.1649631054", + "1.1976837174", + "1.2288858059", + "1.223813828", + "1.1477555575", + "1.1486468425", + "1.1438985308", + "1.1499477809", + "1.0709794629", + "0.9679361458", + "0.9815686588", + "1.2207957605", + "1.4286463863", + "1.1822869494", + "1.2428022349", + "1.2441941839", + "1.2200575765", + "1.2277360797", + "1.2504564707", + "1.2402580028", + "1.2576670988", + "1.2588211602", + "1.2553838302", + "1.2550448718", + "1.2818293441", + "1.2517868264", + "1.2554261049", + "1.2592506864", + "1.2594702202", + "1.2228228558", + "1.227699171", + "1.2487452111", + "1.2291973981", + "1.2365381452", + "1.1884495598", + "1.1808976541", + "1.2116102351", + "1.2077859881", + "1.2201350803", + "1.2249927161", + "1.2196373618", + "1.2192007916", + "1.2102519204", + "1.2222683406", + "1.1999175993", + "1.2158661179", + "1.224578857", + "1.2202935751", + "1.2284911415", + "1.243747363", + "1.2392167105", + "1.1803110065", + "1.2180615167", + "1.2085629133", + "1.1706569846", + "1.4408323121", + "1.4734689699", + "1.4389455306", + "1.4476243841", + "1.4215148403", + "1.2353050004", + "1.0885752285", + "1.0806078032", + "1.1339429143", + "1.0972149996", + "1.1022554907", + "1.1000248926", + "1.0876784719", + "1.092621073", + "1.0458707885", + "1.1011662646", + "1.0955285133", + "1.1410139362", + "1.1191091144", + "1.1114638782", + "1.0987940042", + "1.0116828689", + "1.015600485", + "1.1237552102", + "1.1063112139", + "1.1102585264", + "1.1050708754", + "1.0776547426", + "1.1667301076", + "1.1142996737", + "1.1143460486", + "1.2113949185", + "1.2419418813", + "1.197353695", + "1.2043460664", + "1.1771097216", + "1.1824975198", + "1.1816646419", + "1.1738313263", + "1.1164519444", + "1.2650656967", + "1.3192306642", + "1.2862535875", + "1.2754519866", + "1.2827579012", + "1.2233530626", + "1.2359538935", + "1.2430115065", + "1.2382494742", + "1.2876125157", + "1.2935993879", + "1.302998237", + "1.3150896172", + "1.2502656572", + "1.2920543783", + "1.290185962", + "1.2166003998", + "1.2147281288", + "1.2429239025", + "1.2360272716", + "1.2878460229", + "1.1915219117", + "1.1368512533", + "1.1546649842", + "1.1174095884", + "1.1498093159", + "1.2330400767", + "1.2462824329", + "1.2611986603", + "1.2764350675", + "1.190203663", + "1.1225927121", + "1.18297543", + "1.2556797243", + "1.1015142191", + "1.1303728212", + "1.1364950698", + "1.1932844417", + "1.1466145598", + "1.1531282056", + "1.1579105516", + "1.1391591909", + "1.1654057378", + "1.2326834398", + "1.239237604", + "1.267023119", + "1.2800261092", + "1.2766464092", + "1.1552833288", + "1.1823276359", + "1.1456166804", + "1.1510338989", + "1.2030185108", + "1.2353317321", + "1.2272671105", + "1.2356825739", + "1.2227772312", + "1.2098841452", + "1.2144306332", + "1.2680559251", + "1.3234417465", + "1.4201990677", + "1.3333234856", + "1.3326931807", + "1.3605189324", + "1.2979065727", + "1.364752692", + "1.3597987655", + "1.3247736648", + "1.3340371305", + "1.2293232494", + "1.5208803147", + "1.447035006", + "1.4562240264", + "1.3837336541", + "1.3960244957", + "1.3856393962", + "1.4878430053", + "1.4150746431", + "1.453262258", + "1.4473451322", + "1.4252296142", + "1.3544568277", + "1.3572016712", + "1.4018602213", + "1.3956209797", + "1.4002097803", + "1.3656081925", + "1.357189168", + "1.3491523266", + "1.4088014481", + "1.3676300922", + "1.3752987946", + "1.3458196234", + "1.2985665431", + "1.4021291954", + "1.3402133065", + "1.3333466618", + "1.3535748937", + "1.4297191513", + "1.4419907099", + "1.4505795731", + "1.4456918045", + "1.4394870781", + "1.4293272833", + "1.4283453945", + "1.4216923126", + "1.5398871901", + "1.5207704652", + "1.3947055851", + "1.4439909281", + "1.4439182462", + "1.4375590178", + "1.4400717883", + "1.5061542884", + "1.500704266", + "1.4555827266", + "1.441547383", + "1.4388944809", + "1.4273983969", + "1.4461317906", + "1.4146081664", + "1.4055640161", + "1.4014024562", + "1.4169631501", + "1.412433461", + "1.4033315133", + "1.4099014277", + "1.4245767415", + "1.439327314", + "1.4482616808", + "1.4747263685", + "1.426256976", + "1.4502687437", + "1.4611937673", + "1.4048821219", + "1.459201861", + "1.4341340087", + "1.4100714196", + "1.4095726488", + "1.4172659659", + "1.4112308562", + "1.3843629331", + "1.3923079912", + "1.3954502006", + "1.3667304851" + ] + }, + "essential_compounds": [ + "34dhphe", + "5htrp", + "ac", + "acgam", + "akg", + "ala_D", + "ala_L", + "arbt", + "arg_L", + "asn_L", + "asp_L", + "ca2", + "cd2", + "cl", + "co2", + "cobalt2", + "cu2", + "cys_L", + "dopa", + "fe2", + "fe3", + "fol", + "for", + "fru", + "fum", + "galt", + "gam", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyc", + "gua", + "h2o", + "h2s", + "h", + "hdca", + "his_L", + "hista", + "hxan", + "ile_L", + "k", + "lac_L", + "leu_L", + "lys_L", + "mal_L", + "malt", + "man", + "met_D", + "met_L", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mqn7", + "na1", + "nac", + "nh4", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "phe_L", + "pi", + "ppa", + "ppi", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "so4", + "spmd", + "srtn", + "succ", + "sucr", + "thm", + "thymd", + "tre", + "trp_L", + "trypta", + "tsul", + "ttdca", + "tym", + "ura", + "urea", + "val_L", + "xan", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_409.json b/agents/agora/agent_409.json new file mode 100644 index 0000000000000000000000000000000000000000..49b7b0811b05634c5ce14bd0f85144d19f5c463c --- /dev/null +++ b/agents/agora/agent_409.json @@ -0,0 +1,1033 @@ +{ + "id": 409, + "name": "Finegoldia_magna_ATCC_29328", + "N_R": 887, + "taxonomy": { + "k": 409, + "tax_distance": [ + "2.5419382352", + "2.1240603679", + "2.1173611388", + "2.3439438459", + "2.025343772", + "2.0704724589", + "2.0517671611", + "2.0488245668", + "2.1128061651", + "2.0311620732", + "2.0482267766", + "2.1563490904", + "2.1293668687", + "2.3573808266", + "2.4057376437", + "2.4360701543", + "2.3164197564", + "2.3253438732", + "2.3608183488", + "1.8938026648", + "1.8291316881", + "1.5786104294", + "1.511959997", + "1.3904803203", + "1.2163010415", + "1.2104898334", + "1.207135262", + "1.2094963164", + "1.1937300264", + "1.1850442635", + "1.1874951696", + "1.2890811057", + "1.2986189085", + "1.2949849985", + "1.3106810671", + "1.2791794871", + "1.3019254312", + "1.3202313427", + "1.3011993797", + "1.5941400387", + "1.33898166", + "1.257620604", + "1.2643859102", + "1.2669934903", + "1.2637617483", + "1.26673513", + "1.2618365251", + "1.2622215604", + "1.2564066496", + "1.24844546", + "1.190023282", + "1.195535682", + "1.1897948487", + "1.1619485781", + "1.1684703222", + "1.1975723194", + "1.1714954326", + "1.169479405", + "1.1902338106", + "1.1878939159", + "1.1711520884", + "1.19650286", + "1.1985776498", + "1.1972467566", + "1.2116379741", + "1.213360136", + "1.213360136", + "1.2200057187", + "1.2200057187", + "1.2200057187", + "1.2200057187", + "1.2200057187", + "1.2200057187", + "1.2200057187", + "1.2200057187", + "1.215926356", + "1.2162720932", + "1.2098403856", + "1.2203328602", + "1.2194276183", + "1.2155294487", + "1.2137867751", + "1.2151053449", + "1.2116034644", + "1.2065257161", + "1.2098708417", + "1.2153166085", + "1.2107784168", + "1.1957784607", + "1.2041495756", + "1.1988741904", + "1.2150221314", + "1.2103248422", + "1.2144584115", + "1.1924187009", + "1.1870185171", + "1.2010848722", + "1.2117452812", + "1.2285423242", + "1.210952034", + "1.2009569155", + "1.1996390979", + "1.180388718", + "1.193267207", + "1.252139652", + "1.2469877403", + "1.3138839976", + "1.2800447416", + "1.2172361008", + "1.2209623576", + "1.2236958247", + "1.2165917432", + "1.2165917432", + "1.197967841", + "1.2008719873", + "1.1927714706", + "1.2282971693", + "1.1650746198", + "1.1429837064", + "1.1608480627", + "1.1475770674", + "1.1480026598", + "1.2662543734", + "1.2734448242", + "1.2948858371", + "1.0994821214", + "1.2692310747", + "1.2759063088", + "1.2605432165", + "1.2801772217", + "1.2693643077", + "1.274430794", + "1.2659345164", + "1.2589844113", + "1.2498547142", + "1.2505128346", + "1.2694267578", + "1.2425453139", + "1.2245811034", + "1.3184690443", + "1.319842918", + "1.2891545057", + "1.3467341963", + "1.2843127838", + "1.2898067266", + "1.2868457015", + "1.3115526866", + "1.3007302378", + "1.2088871658", + "1.1799770763", + "1.1411660163", + "1.1190647231", + "1.1104229168", + "1.1053027257", + "1.1421743514", + "1.1446694773", + "1.1164814084", + "1.1048434545", + "1.1084299635", + "1.1773830743", + "1.1840914564", + "1.1537205098", + "1.277638583", + "1.2721236876", + "1.2744647388", + "1.2321878126", + "1.2283338331", + "1.2662404068", + "1.2580635925", + "1.22682157", + "1.2283809287", + "1.2464009224", + "1.2030961277", + "1.1922599987", + "1.1934205512", + "1.2269068926", + "1.2150833399", + "1.1964564827", + "1.215445105", + "1.1967771063", + "1.2105920485", + "1.2048094775", + "1.2037410955", + "1.2242995472", + "1.2200869998", + "1.2029679544", + "1.2371963284", + "1.2219620867", + "1.2270743957", + "1.2264677102", + "1.1908660798", + "1.1868458716", + "1.17137852", + "1.1897250252", + "1.1866586504", + "1.1609670566", + "1.1439543087", + "1.1386466578", + "1.1433884424", + "1.1425298317", + "1.1752957916", + "1.1743151298", + "1.1983549274", + "1.1762459004", + "1.1367379084", + "1.1399023192", + "1.1649642112", + "1.1612553271", + "1.1370047104", + "1.1295473605", + "1.1319006198", + "1.1410781547", + "1.0668440578", + "1.1094471586", + "1.0937433879", + "1.0875816247", + "1.0813013799", + "1.0691987623", + "1.0723691017", + "1.1145411911", + "1.5489330223", + "1.6337112214", + "1.5462466463", + "1.5314289342", + "1.5097563014", + "1.0634339603", + "1.0822383663", + "1.1321712314", + "1.0938104794", + "1.1090476824", + "1.22258482", + "1.1763554271", + "1.1980071013", + "1.1566737552", + "1.0700120667", + "1.0823944096", + "1.0888854808", + "1.1493120176", + "1.140512485", + "1.138593754", + "1.1645960351", + "1.1619035995", + "1.1531355439", + "1.1846561675", + "1.192739632", + "1.1769283588", + "1.150310109", + "1.1449645359", + "1.1503752118", + "1.1390820706", + "1.0840511758", + "1.0891359977", + "1.0883807742", + "1.1351923587", + "1.0906220793", + "1.0730738809", + "1.1504986871", + "1.1037660473", + "1.0788485848", + "1.091884076", + "1.0624995624", + "1.0277132042", + "1.11180124", + "1.1141550264", + "1.1189322361", + "1.1242778341", + "1.0899768083", + "1.1506325576", + "1.157468673", + "1.1539796705", + "1.1666447359", + "1.1527286931", + "1.1325127869", + "1.1239120182", + "1.1705638864", + "1.1898421591", + "1.240521179", + "1.0834435628", + "1.0526162687", + "1.1456219826", + "1.1446052827", + "1.131826207", + "1.0887509199", + "1.1535742341", + "1.1445174819", + "1.1471697442", + "1.1783090495", + "1.1199679163", + "1.1052342135", + "1.0868590852", + "1.1151747239", + "1.0866817986", + "1.1418277159", + "1.1728211159", + "1.1954539637", + "1.1521377867", + "1.1234839982", + "1.1437308949", + "1.1234845065", + "1.1098705316", + "1.0746154607", + "1.1095650202", + "1.0406545443", + "1.0579199153", + "1.1407286263", + "1.1290939655", + "1.1261955392", + "1.1363498464", + "1.1447127319", + "1.1340353707", + "1.1459759383", + "1.1344424808", + "1.1319809742", + "1.1003918426", + "1.1063867484", + "1.1126447456", + "1.0997992002", + "1.1333378371", + "1.0655670488", + "1.1240649891", + "1.1212097565", + "1.111450289", + "1.1106754126", + "1.1368175374", + "1.1134263006", + "1.0831201626", + "0.9977920632", + "1.009596608", + "1.0106138839", + "0.9546371067", + "0.9667640272", + "0.9634756252", + "0.9448014261", + "0.9534833778", + "0.9494425909", + "0.9394794411", + "0.9652804677", + "0.961969131", + "0.9253398527", + "0.9438782854", + "0.9016370264", + "0.9043159652", + "0.9183063805", + "0.9198074902", + "0.9064776451", + "0.895956251", + "0.9227106833", + "0.9086337362", + "0.8686274391", + "0.8759909747", + "1.0455585382", + "0.8658920294", + "0.8704363837", + "0.8740401576", + "0.8699875494", + "0.8371055227", + "0.8669141975", + "0.8869734397", + "0.8889661634", + "0.887048564", + "0.870365475", + "0.8692055454", + "0.8349691356", + "0.8372449371", + "0.9631283306", + "0.9743226867", + "0.8606094624", + "0.8662668742", + "0.8563381826", + "0.820470002", + "0.8460783989", + "0.8368132844", + "0.8289485366", + "0.8280946062", + "0.8356191621", + "0.8296116883", + "0.8486806072", + "0.8426042904", + "0.8543266412", + "0.8490938654", + "0.8358776162", + "0.8239439145", + "0.8336046404", + "0.8294511561", + "0.8353534587", + "0.8274051139", + "0.8028445782", + "0.8122575447", + "0.8060891293", + "0.8341203169", + "0.8318153693", + "0.2859701016", + "0.2998012244", + "0.3124933351", + "0.197191993", + "0.2008158919", + "0.1896027487", + "0.2056531466", + "0.1862030588", + "0.1826263577", + "0.1995434166", + "0.1893444084", + "0.1939031802", + "0.2019562019", + "0.1632854736", + "0.155110267", + "0.1863040797", + "0.0447197974", + "0.0", + "0.2411734353", + "0.2356808406", + "0.2257862165", + "0.2859632929", + "0.25687216", + "0.2270753694", + "0.2458903888", + "0.265656147", + "0.2417658373", + "0.223469212", + "0.2519823881", + "0.2682875796", + "0.2756439798", + "0.2580421568", + "0.4126997784", + "0.4188710355", + "0.422588693", + "0.4578507846", + "0.4118624026", + "0.4375382103", + "0.3744492377", + "0.3573307996", + "0.6766566481", + "0.6876453367", + "0.6217166272", + "0.6229935036", + "0.5811766557", + "0.5975958267", + "0.5959794926", + "0.619718622", + "0.6071431608", + "0.5849403411", + "0.7661313468", + "0.7724306824", + "0.752432377", + "0.7649608229", + "0.7634868252", + "0.7318886154", + "0.7416877549", + "0.7906163049", + "0.826040468", + "0.8008532887", + "0.7815414865", + "0.7303954113", + "0.742194012", + "0.7418874618", + "0.7727033572", + "0.773061053", + "0.7057785319", + "0.8435511383", + "0.8481347795", + "0.8578783555", + "0.8376398996", + "0.7993352194", + "0.8687287162", + "0.8496923927", + "0.8545540809", + "0.7913422345", + "0.8230543479", + "0.8316904066", + "0.8433481608", + "0.8257836213", + "0.8124193057", + "0.7767863241", + "0.7758719517", + "0.7823386415", + "0.8581769242", + "0.8382934365", + "0.9136763349", + "0.8676867818", + "0.8220292051", + "0.828234242", + "0.8331745314", + "0.8278658727", + "0.8220642717", + "0.8495045407", + "0.8316480769", + "0.8235985833", + "0.8145856163", + "0.8365230933", + "0.8310212485", + "0.8326551405", + "0.7966050494", + "0.7987615208", + "0.7718873079", + "0.8551509984", + "0.8308892221", + "0.8162474085", + "0.7965160626", + "0.9322397533", + "0.9354995616", + "0.9634065429", + "0.9180423639", + "0.9221456799", + "0.9361941594", + "0.9499106252", + "0.9735498464", + "0.9147451547", + "0.8927589868", + "0.9213652193", + "0.8896158747", + "0.8929297", + "0.9058969468", + "0.8862515819", + "0.8935139261", + "0.8791490732", + "0.8750606443", + "0.956804277", + "0.9489957426", + "0.9033149331", + "0.9240818958", + "0.9207626251", + "0.9739719846", + "0.9013703389", + "0.885581562", + "0.9032140889", + "0.9040372046", + "0.9054670668", + "0.9308880368", + "0.9428126862", + "1.0012767064", + "1.0046631006", + "0.9877087781", + "0.9729409158", + "0.9537147829", + "0.9228489036", + "1.2841309654", + "1.3085714419", + "1.2724161634", + "1.2830667681", + "1.2603112336", + "1.2465596127", + "1.3369079982", + "1.3657521833", + "1.3668701055", + "1.2911392409", + "1.2886713656", + "1.2887380812", + "1.282528187", + "1.3006153956", + "1.2766325398", + "1.2524847093", + "1.2152815994", + "1.223424597", + "1.2016060184", + "1.2223376679", + "1.1806220976", + "1.1951096305", + "1.1967620567", + "1.2023778977", + "1.1948850823", + "1.1944196832", + "1.1916805353", + "1.1819829082", + "1.1996901305", + "1.1798364949", + "1.1822836458", + "1.1780238114", + "1.1926822584", + "1.2117823605", + "1.1550802418", + "1.177481016", + "1.1855186468", + "1.1846607372", + "1.1679173918", + "1.1571395523", + "1.15727071", + "1.1619633576", + "1.1652801314", + "1.1980007434", + "1.2292028319", + "1.224130854", + "1.1480725835", + "1.1489638685", + "1.1442155568", + "1.1502648069", + "1.0712964889", + "0.9682531718", + "0.9818856848", + "1.2211127865", + "1.4289634123", + "1.1826039754", + "1.2431192609", + "1.2445112099", + "1.2203746025", + "1.2280531057", + "1.2507734967", + "1.2405750288", + "1.2579841248", + "1.2591381862", + "1.2557008562", + "1.2553618978", + "1.2821463701", + "1.2521038524", + "1.2557431309", + "1.2595677124", + "1.2597872462", + "1.2231398818", + "1.228016197", + "1.2490622371", + "1.2295144241", + "1.2368551712", + "1.1887665858", + "1.1812146801", + "1.2119272611", + "1.2081030141", + "1.2204521063", + "1.2253097421", + "1.2199543878", + "1.2195178176", + "1.2105689464", + "1.2225853666", + "1.2002346253", + "1.2161831439", + "1.224895883", + "1.2206106011", + "1.2288081675", + "1.244064389", + "1.2395337365", + "1.1806280325", + "1.2183785427", + "1.2088799393", + "1.1709740106", + "1.4411493381", + "1.4737859959", + "1.4392625566", + "1.4479414101", + "1.4218318663", + "1.2356220264", + "1.0888922545", + "1.0809248292", + "1.1342599403", + "1.0975320256", + "1.1025725167", + "1.1003419186", + "1.0879954979", + "1.092938099", + "1.0461878145", + "1.1014832906", + "1.0958455393", + "1.1413309622", + "1.1194261404", + "1.1117809042", + "1.0991110302", + "1.0119998949", + "1.015917511", + "1.1240722362", + "1.1066282399", + "1.1105755524", + "1.1053879014", + "1.0779717686", + "1.1670471336", + "1.1146166997", + "1.1146630746", + "1.2117119445", + "1.2422589073", + "1.197670721", + "1.2046630924", + "1.1774267476", + "1.1828145458", + "1.1819816679", + "1.1741483523", + "1.1167689704", + "1.2653827227", + "1.3195476902", + "1.2865706135", + "1.2757690126", + "1.2830749272", + "1.2236700886", + "1.2362709195", + "1.2433285325", + "1.2385665002", + "1.2879295417", + "1.2939164139", + "1.303315263", + "1.3154066432", + "1.2505826832", + "1.2923714043", + "1.290502988", + "1.2169174258", + "1.2150451548", + "1.2432409285", + "1.2363442976", + "1.2881630489", + "1.1918389377", + "1.1371682793", + "1.1549820102", + "1.1177266144", + "1.1501263419", + "1.2333571027", + "1.2465994589", + "1.2615156863", + "1.2767520935", + "1.190520689", + "1.1229097381", + "1.183292456", + "1.2559967503", + "1.1018312451", + "1.1306898472", + "1.1368120958", + "1.1936014677", + "1.1469315858", + "1.1534452316", + "1.1582275776", + "1.1394762169", + "1.1657227638", + "1.2330004658", + "1.23955463", + "1.267340145", + "1.2803431352", + "1.2769634352", + "1.1556003548", + "1.1826446619", + "1.1459337064", + "1.1513509249", + "1.2033355368", + "1.2356487581", + "1.2275841365", + "1.2359995999", + "1.2230942572", + "1.2102011712", + "1.2147476592", + "1.2683729511", + "1.3237587725", + "1.4205160937", + "1.3336405116", + "1.3330102067", + "1.3608359584", + "1.2982235987", + "1.365069718", + "1.3601157915", + "1.3250906908", + "1.3343541565", + "1.2296402754", + "1.5211973407", + "1.447352032", + "1.4565410524", + "1.3840506801", + "1.3963415217", + "1.3859564222", + "1.4881600313", + "1.4153916691", + "1.453579284", + "1.4476621582", + "1.4255466402", + "1.3547738537", + "1.3575186972", + "1.4021772473", + "1.3959380057", + "1.4005268063", + "1.3659252185", + "1.357506194", + "1.3494693526", + "1.4091184741", + "1.3679471182", + "1.3756158206", + "1.3461366494", + "1.2988835691", + "1.4024462214", + "1.3405303325", + "1.3336636878", + "1.3538919197", + "1.4300361773", + "1.4423077359", + "1.4508965991", + "1.4460088305", + "1.4398041041", + "1.4296443093", + "1.4286624205", + "1.4220093386", + "1.5402042161", + "1.5210874912", + "1.3950226111", + "1.4443079541", + "1.4442352722", + "1.4378760438", + "1.4403888143", + "1.5064713144", + "1.501021292", + "1.4558997526", + "1.441864409", + "1.4392115069", + "1.4277154229", + "1.4464488166", + "1.4149251924", + "1.4058810421", + "1.4017194822", + "1.4172801761", + "1.412750487", + "1.4036485393", + "1.4102184537", + "1.4248937675", + "1.43964434", + "1.4485787068", + "1.4750433945", + "1.426574002", + "1.4505857697", + "1.4615107933", + "1.4051991479", + "1.459518887", + "1.4344510347", + "1.4103884456", + "1.4098896748", + "1.4175829919", + "1.4115478822", + "1.3846799591", + "1.3926250172", + "1.3957672266", + "1.3670475111" + ] + }, + "essential_compounds": [ + "12ppd_S", + "15dap", + "26dap_M", + "2ddglcn", + "2hyoxplac", + "34dhpha", + "34dhphe", + "3hphac", + "3mop", + "4abut", + "4abz", + "4hbz", + "4hoxpacd", + "5htrp", + "5mta", + "Lcyst", + "ac", + "acald", + "acgam", + "actn_R", + "adn", + "adocbl", + "akg", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arg_L", + "asn_L", + "aso3", + "aso4", + "asp_L", + "bhb", + "btd_RR", + "butso3", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cit", + "cl", + "co2", + "cobalt2", + "csn", + "cu2", + "cynt", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dgsn", + "diact", + "din", + "dms", + "dmso", + "dopa", + "drib", + "duri", + "ethso3", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "fuc1p_L", + "fuc_L", + "fum", + "g6p", + "gal", + "galct_D", + "galctn_D", + "galt", + "galur", + "gam", + "gcald", + "glc_D", + "glcn", + "glcr", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gthrd", + "gua", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hexs", + "hg2", + "his_L", + "hista", + "hxan", + "ile_L", + "inost", + "ins", + "isetac", + "k", + "kesto", + "kestopt", + "kestottr", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man6p", + "man", + "melib", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mops", + "mso3", + "na1", + "nac", + "nh4", + "ni2", + "nmn", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "pac", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppa", + "ppi", + "pppn", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "raffin", + "rib_D", + "rmn", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "so4", + "spmd", + "srtn", + "succ", + "sucr", + "sulfac", + "taur", + "thm", + "thr_L", + "thymd", + "tma", + "tre", + "trp_L", + "trypta", + "tsul", + "ttdca", + "tym", + "tyr_L", + "ura", + "urea", + "uri", + "val_L", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_410.json b/agents/agora/agent_410.json new file mode 100644 index 0000000000000000000000000000000000000000..6fa6c29fc3c16b8f703101b29b5f22852ca75c57 --- /dev/null +++ b/agents/agora/agent_410.json @@ -0,0 +1,1009 @@ +{ + "id": 410, + "name": "Flavonifractor_plautii_ATCC_29863", + "N_R": 1386, + "taxonomy": { + "k": 410, + "tax_distance": [ + "2.5425816491", + "2.1247037818", + "2.1180045527", + "2.3445872598", + "2.0259871859", + "2.0711158728", + "2.052410575", + "2.0494679807", + "2.113449579", + "2.0318054871", + "2.0488701905", + "2.1569925043", + "2.1300102826", + "2.3580242405", + "2.4063810576", + "2.4367135682", + "2.3170631703", + "2.3259872871", + "2.3614617627", + "1.8944460787", + "1.829775102", + "1.5792538433", + "1.5126034109", + "1.3911237342", + "1.2169444554", + "1.2111332473", + "1.2077786759", + "1.2101397303", + "1.1943734403", + "1.1856876774", + "1.1881385835", + "1.2897245196", + "1.2992623224", + "1.2956284124", + "1.311324481", + "1.279822901", + "1.3025688451", + "1.3208747566", + "1.3018427936", + "1.5947834526", + "1.3396250739", + "1.2582640179", + "1.2650293241", + "1.2676369042", + "1.2644051622", + "1.2673785439", + "1.262479939", + "1.2628649743", + "1.2570500635", + "1.2490888739", + "1.1906666959", + "1.1961790959", + "1.1904382626", + "1.162591992", + "1.1691137361", + "1.1982157333", + "1.1721388465", + "1.1701228189", + "1.1908772245", + "1.1885373298", + "1.1717955023", + "1.1971462739", + "1.1992210637", + "1.1978901705", + "1.212281388", + "1.2140035499", + "1.2140035499", + "1.2206491326", + "1.2206491326", + "1.2206491326", + "1.2206491326", + "1.2206491326", + "1.2206491326", + "1.2206491326", + "1.2206491326", + "1.2165697699", + "1.2169155071", + "1.2104837995", + "1.2209762741", + "1.2200710322", + "1.2161728626", + "1.214430189", + "1.2157487588", + "1.2122468783", + "1.20716913", + "1.2105142556", + "1.2159600224", + "1.2114218307", + "1.1964218746", + "1.2047929895", + "1.1995176043", + "1.2156655453", + "1.2109682561", + "1.2151018254", + "1.1930621148", + "1.187661931", + "1.2017282861", + "1.2123886951", + "1.2291857381", + "1.2115954479", + "1.2016003294", + "1.2002825118", + "1.1810321319", + "1.1939106209", + "1.2527830659", + "1.2476311542", + "1.3145274115", + "1.2806881555", + "1.2178795147", + "1.2216057715", + "1.2243392386", + "1.2172351571", + "1.2172351571", + "1.1986112549", + "1.2015154012", + "1.1934148845", + "1.2289405832", + "1.1657180337", + "1.1436271203", + "1.1614914766", + "1.1482204813", + "1.1486460737", + "1.2668977873", + "1.2740882381", + "1.295529251", + "1.1001255353", + "1.2698744886", + "1.2765497227", + "1.2611866304", + "1.2808206356", + "1.2700077216", + "1.2750742079", + "1.2665779303", + "1.2596278252", + "1.2504981281", + "1.2511562485", + "1.2700701717", + "1.2431887278", + "1.2252245173", + "1.3191124582", + "1.3204863319", + "1.2897979196", + "1.3473776102", + "1.2849561977", + "1.2904501405", + "1.2874891154", + "1.3121961005", + "1.3013736517", + "1.2095305797", + "1.1806204902", + "1.1418094302", + "1.119708137", + "1.1110663307", + "1.1059461396", + "1.1428177653", + "1.1453128912", + "1.1171248223", + "1.1054868684", + "1.1090733774", + "1.1780264882", + "1.1847348703", + "1.1543639237", + "1.2782819969", + "1.2727671015", + "1.2751081527", + "1.2328312265", + "1.228977247", + "1.2668838207", + "1.2587070064", + "1.2274649839", + "1.2290243426", + "1.2470443363", + "1.2037395416", + "1.1929034126", + "1.1940639651", + "1.2275503065", + "1.2157267538", + "1.1970998966", + "1.2160885189", + "1.1974205202", + "1.2112354624", + "1.2054528914", + "1.2043845094", + "1.2249429611", + "1.2207304137", + "1.2036113683", + "1.2378397423", + "1.2226055006", + "1.2277178096", + "1.2271111241", + "1.1915094937", + "1.1874892855", + "1.1720219339", + "1.1903684391", + "1.1873020643", + "1.1616104705", + "1.1445977226", + "1.1392900717", + "1.1440318563", + "1.1431732456", + "1.1759392055", + "1.1749585437", + "1.1989983413", + "1.1768893143", + "1.1373813223", + "1.1405457331", + "1.1656076251", + "1.161898741", + "1.1376481243", + "1.1301907744", + "1.1325440337", + "1.1417215686", + "1.0674874717", + "1.1100905725", + "1.0943868018", + "1.0882250386", + "1.0819447938", + "1.0698421762", + "1.0730125156", + "1.115184605", + "1.5495764362", + "1.6343546353", + "1.5468900602", + "1.5320723481", + "1.5103997153", + "1.0640773742", + "1.0828817802", + "1.1328146453", + "1.0944538933", + "1.1096910963", + "1.2232282339", + "1.176998841", + "1.1986505152", + "1.1573171691", + "1.0706554806", + "1.0830378235", + "1.0895288947", + "1.1499554315", + "1.1411558989", + "1.1392371679", + "1.165239449", + "1.1625470134", + "1.1537789578", + "1.1852995814", + "1.1933830459", + "1.1775717727", + "1.1509535229", + "1.1456079498", + "1.1510186257", + "1.1397254845", + "1.0846945897", + "1.0897794116", + "1.0890241881", + "1.1358357726", + "1.0912654932", + "1.0737172948", + "1.151142101", + "1.1044094612", + "1.0794919987", + "1.0925274899", + "1.0631429763", + "1.0283566181", + "1.1124446539", + "1.1147984403", + "1.11957565", + "1.124921248", + "1.0906202222", + "1.1512759715", + "1.1581120869", + "1.1546230844", + "1.1672881498", + "1.153372107", + "1.1331562008", + "1.1245554321", + "1.1712073003", + "1.190485573", + "1.2411645929", + "1.0840869767", + "1.0532596826", + "1.1462653965", + "1.1452486966", + "1.1324696209", + "1.0893943338", + "1.154217648", + "1.1451608958", + "1.1478131581", + "1.1789524634", + "1.1206113302", + "1.1058776274", + "1.0875024991", + "1.1158181378", + "1.0873252125", + "1.1424711298", + "1.1734645298", + "1.1960973776", + "1.1527812006", + "1.1241274121", + "1.1443743088", + "1.1241279204", + "1.1105139455", + "1.0752588746", + "1.1102084341", + "1.0412979582", + "1.0585633292", + "1.1413720402", + "1.1297373794", + "1.1268389531", + "1.1369932603", + "1.1453561458", + "1.1346787846", + "1.1466193522", + "1.1350858947", + "1.1326243881", + "1.1010352565", + "1.1070301623", + "1.1132881595", + "1.1004426141", + "1.133981251", + "1.0662104627", + "1.124708403", + "1.1218531704", + "1.1120937029", + "1.1113188265", + "1.1374609513", + "1.1140697145", + "1.0837635765", + "0.9984354771", + "1.0102400219", + "1.0112572978", + "0.9552805206", + "0.9674074411", + "0.9641190391", + "0.94544484", + "0.9541267917", + "0.9500860048", + "0.940122855", + "0.9659238816", + "0.9626125449", + "0.9259832666", + "0.9445216993", + "0.9022804403", + "0.9049593791", + "0.9189497944", + "0.9204509041", + "0.907121059", + "0.8965996649", + "0.9233540972", + "0.9092771501", + "0.869270853", + "0.8766343886", + "1.0462019521", + "0.8665354433", + "0.8710797976", + "0.8746835715", + "0.8706309633", + "0.8377489366", + "0.8675576114", + "0.8876168536", + "0.8896095773", + "0.8876919779", + "0.8710088889", + "0.8698489593", + "0.8356125495", + "0.837888351", + "0.9637717445", + "0.9749661006", + "0.8612528763", + "0.8669102881", + "0.8569815965", + "0.8211134159", + "0.8467218128", + "0.8374566983", + "0.8295919505", + "0.8287380201", + "0.836262576", + "0.8302551022", + "0.8493240211", + "0.8432477043", + "0.8549700551", + "0.8497372793", + "0.8365210301", + "0.8245873284", + "0.8342480543", + "0.83009457", + "0.8359968726", + "0.8280485278", + "0.8034879921", + "0.8129009586", + "0.8067325432", + "0.8347637308", + "0.8324587832", + "0.2866135155", + "0.3004446383", + "0.313136749", + "0.2219290373", + "0.2255529362", + "0.214339793", + "0.2303901909", + "0.2109401031", + "0.207363402", + "0.2242804609", + "0.2140814527", + "0.2186402245", + "0.2266932462", + "0.2124784097", + "0.2043032031", + "0.2643941826", + "0.2408564093", + "0.2411734353", + "0.0", + "0.0745092087", + "0.0932523934", + "0.1972984696", + "0.1682073367", + "0.2277187833", + "0.2465338027", + "0.2662995609", + "0.2424092512", + "0.2241126259", + "0.252625802", + "0.2689309935", + "0.2762873937", + "0.2586855707", + "0.4133431923", + "0.4195144494", + "0.4232321069", + "0.4584941985", + "0.4125058165", + "0.4381816242", + "0.3750926516", + "0.3579742135", + "0.677300062", + "0.6882887506", + "0.6223600411", + "0.6236369175", + "0.5818200696", + "0.5982392406", + "0.5966229065", + "0.6203620359", + "0.6077865747", + "0.585583755", + "0.7667747607", + "0.7730740963", + "0.7530757909", + "0.7656042368", + "0.7641302391", + "0.7325320293", + "0.7423311688", + "0.7912597188", + "0.8266838819", + "0.8014967026", + "0.7821849004", + "0.7310388252", + "0.7428374259", + "0.7425308757", + "0.7733467711", + "0.7737044669", + "0.7064219458", + "0.8441945522", + "0.8487781934", + "0.8585217694", + "0.8382833135", + "0.7999786333", + "0.8693721301", + "0.8503358066", + "0.8551974948", + "0.7919856484", + "0.8236977618", + "0.8323338205", + "0.8439915747", + "0.8264270352", + "0.8130627196", + "0.777429738", + "0.7765153656", + "0.7829820554", + "0.8588203381", + "0.8389368504", + "0.9143197488", + "0.8683301957", + "0.822672619", + "0.8288776559", + "0.8338179453", + "0.8285092866", + "0.8227076856", + "0.8501479546", + "0.8322914908", + "0.8242419972", + "0.8152290302", + "0.8371665072", + "0.8316646624", + "0.8332985544", + "0.7972484633", + "0.7994049347", + "0.7725307218", + "0.8557944123", + "0.831532636", + "0.8168908224", + "0.7971594765", + "0.9328831672", + "0.9361429755", + "0.9640499568", + "0.9186857778", + "0.9227890938", + "0.9368375733", + "0.9505540391", + "0.9741932603", + "0.9153885686", + "0.8934024007", + "0.9220086332", + "0.8902592886", + "0.8935731139", + "0.9065403607", + "0.8868949958", + "0.89415734", + "0.8797924871", + "0.8757040582", + "0.9574476909", + "0.9496391565", + "0.903958347", + "0.9247253097", + "0.921406039", + "0.9746153985", + "0.9020137528", + "0.8862249759", + "0.9038575028", + "0.9046806185", + "0.9061104807", + "0.9315314507", + "0.9434561001", + "1.0019201203", + "1.0053065145", + "0.988352192", + "0.9735843297", + "0.9543581968", + "0.9234923175", + "1.2847743793", + "1.3092148558", + "1.2730595773", + "1.283710182", + "1.2609546475", + "1.2472030266", + "1.3375514121", + "1.3663955972", + "1.3675135194", + "1.2917826548", + "1.2893147795", + "1.2893814951", + "1.2831716009", + "1.3012588095", + "1.2772759537", + "1.2531281232", + "1.2159250133", + "1.2240680109", + "1.2022494323", + "1.2229810818", + "1.1812655115", + "1.1957530444", + "1.1974054706", + "1.2030213116", + "1.1955284962", + "1.1950630971", + "1.1923239492", + "1.1826263221", + "1.2003335444", + "1.1804799088", + "1.1829270597", + "1.1786672253", + "1.1933256723", + "1.2124257744", + "1.1557236557", + "1.1781244299", + "1.1861620607", + "1.1853041511", + "1.1685608057", + "1.1577829662", + "1.1579141239", + "1.1626067715", + "1.1659235453", + "1.1986441573", + "1.2298462458", + "1.2247742679", + "1.1487159974", + "1.1496072824", + "1.1448589707", + "1.1509082208", + "1.0719399028", + "0.9688965857", + "0.9825290987", + "1.2217562004", + "1.4296068262", + "1.1832473893", + "1.2437626748", + "1.2451546238", + "1.2210180164", + "1.2286965196", + "1.2514169106", + "1.2412184427", + "1.2586275387", + "1.2597816001", + "1.2563442701", + "1.2560053117", + "1.282789784", + "1.2527472663", + "1.2563865448", + "1.2602111263", + "1.2604306601", + "1.2237832957", + "1.2286596109", + "1.249705651", + "1.230157838", + "1.2374985851", + "1.1894099997", + "1.181858094", + "1.212570675", + "1.208746428", + "1.2210955202", + "1.225953156", + "1.2205978017", + "1.2201612315", + "1.2112123603", + "1.2232287805", + "1.2008780392", + "1.2168265578", + "1.2255392969", + "1.221254015", + "1.2294515814", + "1.2447078029", + "1.2401771504", + "1.1812714464", + "1.2190219566", + "1.2095233532", + "1.1716174245", + "1.441792752", + "1.4744294098", + "1.4399059705", + "1.448584824", + "1.4224752802", + "1.2362654403", + "1.0895356684", + "1.0815682431", + "1.1349033542", + "1.0981754395", + "1.1032159306", + "1.1009853325", + "1.0886389118", + "1.0935815129", + "1.0468312284", + "1.1021267045", + "1.0964889532", + "1.1419743761", + "1.1200695543", + "1.1124243181", + "1.0997544441", + "1.0126433088", + "1.0165609249", + "1.1247156501", + "1.1072716538", + "1.1112189663", + "1.1060313153", + "1.0786151825", + "1.1676905475", + "1.1152601136", + "1.1153064885", + "1.2123553584", + "1.2429023212", + "1.1983141349", + "1.2053065063", + "1.1780701615", + "1.1834579597", + "1.1826250818", + "1.1747917662", + "1.1174123843", + "1.2660261366", + "1.3201911041", + "1.2872140274", + "1.2764124265", + "1.2837183411", + "1.2243135025", + "1.2369143334", + "1.2439719464", + "1.2392099141", + "1.2885729556", + "1.2945598278", + "1.3039586769", + "1.3160500571", + "1.2512260971", + "1.2930148182", + "1.2911464019", + "1.2175608397", + "1.2156885687", + "1.2438843424", + "1.2369877115", + "1.2888064628", + "1.1924823516", + "1.1378116932", + "1.1556254241", + "1.1183700283", + "1.1507697558", + "1.2340005166", + "1.2472428728", + "1.2621591002", + "1.2773955074", + "1.1911641029", + "1.123553152", + "1.1839358699", + "1.2566401642", + "1.102474659", + "1.1313332611", + "1.1374555097", + "1.1942448816", + "1.1475749997", + "1.1540886455", + "1.1588709915", + "1.1401196308", + "1.1663661777", + "1.2336438797", + "1.2401980439", + "1.2679835589", + "1.2809865491", + "1.2776068491", + "1.1562437687", + "1.1832880758", + "1.1465771203", + "1.1519943388", + "1.2039789507", + "1.236292172", + "1.2282275504", + "1.2366430138", + "1.2237376711", + "1.2108445851", + "1.2153910731", + "1.269016365", + "1.3244021864", + "1.4211595076", + "1.3342839255", + "1.3336536206", + "1.3614793723", + "1.2988670126", + "1.3657131319", + "1.3607592054", + "1.3257341047", + "1.3349975704", + "1.2302836893", + "1.5218407546", + "1.4479954459", + "1.4571844663", + "1.384694094", + "1.3969849356", + "1.3865998361", + "1.4888034452", + "1.416035083", + "1.4542226979", + "1.4483055721", + "1.4261900541", + "1.3554172676", + "1.3581621111", + "1.4028206612", + "1.3965814196", + "1.4011702202", + "1.3665686324", + "1.3581496079", + "1.3501127665", + "1.409761888", + "1.3685905321", + "1.3762592345", + "1.3467800633", + "1.299526983", + "1.4030896353", + "1.3411737464", + "1.3343071017", + "1.3545353336", + "1.4306795912", + "1.4429511498", + "1.451540013", + "1.4466522444", + "1.440447518", + "1.4302877232", + "1.4293058344", + "1.4226527525", + "1.54084763", + "1.5217309051", + "1.395666025", + "1.444951368", + "1.4448786861", + "1.4385194577", + "1.4410322282", + "1.5071147283", + "1.5016647059", + "1.4565431665", + "1.4425078229", + "1.4398549208", + "1.4283588368", + "1.4470922305", + "1.4155686063", + "1.406524456", + "1.4023628961", + "1.41792359", + "1.4133939009", + "1.4042919532", + "1.4108618676", + "1.4255371814", + "1.4402877539", + "1.4492221207", + "1.4756868084", + "1.4272174159", + "1.4512291836", + "1.4621542072", + "1.4058425618", + "1.4601623009", + "1.4350944486", + "1.4110318595", + "1.4105330887", + "1.4182264058", + "1.4121912961", + "1.385323373", + "1.3932684311", + "1.3964106405", + "1.367690925" + ] + }, + "essential_compounds": [ + "12ppd_S", + "2ddglcn", + "34dhpha", + "4hbz", + "4hoxpacd", + "Lcyst", + "ac", + "acald", + "acgam", + "actn_R", + "adn", + "adocbl", + "akg", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_L", + "arbt", + "arg_L", + "asn_L", + "aso3", + "aso4", + "asp_L", + "btd_RR", + "btn", + "butso3", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cit", + "cl", + "co2", + "cobalt2", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "ddca", + "dgsn", + "diact", + "din", + "dms", + "dmso", + "drib", + "duri", + "ethso3", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "fuc1p_L", + "fuc_L", + "fum", + "g6p", + "gal", + "galct_D", + "galctn_D", + "galur", + "gam", + "gcald", + "glc_D", + "glcn", + "glcr", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gsn", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hexs", + "hg2", + "his_L", + "hxan", + "ile_L", + "ins", + "isetac", + "k", + "lac_D", + "lac_L", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man6p", + "man", + "melib", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mops", + "mso3", + "na1", + "nac", + "nh4", + "ni2", + "nmn", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "oxa", + "pac", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppi", + "pppn", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "rib_D", + "rmn", + "salcn", + "ser_D", + "ser_L", + "so4", + "spmd", + "succ", + "sulfac", + "taur", + "thm", + "thr_L", + "thymd", + "tma", + "tmao", + "tre", + "trp_L", + "tsul", + "ttdca", + "tym", + "tyr_L", + "ura", + "urea", + "uri", + "val_L", + "xan", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_411.json b/agents/agora/agent_411.json new file mode 100644 index 0000000000000000000000000000000000000000..53e88bbd5ee20f0a3a71b2b76468054140bae150 --- /dev/null +++ b/agents/agora/agent_411.json @@ -0,0 +1,1024 @@ +{ + "id": 411, + "name": "Fusobacterium_gonidiaformans_3_1_5R", + "N_R": 1324, + "taxonomy": { + "k": 411, + "tax_distance": [ + "2.5370890544", + "2.1192111871", + "2.112511958", + "2.3390946651", + "2.0204945912", + "2.0656232781", + "2.0469179803", + "2.043975386", + "2.1079569843", + "2.0263128924", + "2.0433775958", + "2.1514999096", + "2.1245176879", + "2.3525316458", + "2.4008884629", + "2.4312209735", + "2.3115705756", + "2.3204946924", + "2.355969168", + "1.888953484", + "1.8242825073", + "1.5737612486", + "1.5071108162", + "1.3856311395", + "1.2114518607", + "1.2056406526", + "1.2022860812", + "1.2046471356", + "1.1888808456", + "1.1801950827", + "1.1826459888", + "1.2842319249", + "1.2937697277", + "1.2901358177", + "1.3058318863", + "1.2743303063", + "1.2970762504", + "1.3153821619", + "1.2963501989", + "1.5892908579", + "1.3341324792", + "1.2527714232", + "1.2595367294", + "1.2621443095", + "1.2589125675", + "1.2618859492", + "1.2569873443", + "1.2573723796", + "1.2515574688", + "1.2435962792", + "1.1851741012", + "1.1906865012", + "1.1849456679", + "1.1570993973", + "1.1636211414", + "1.1927231386", + "1.1666462518", + "1.1646302242", + "1.1853846298", + "1.1830447351", + "1.1663029076", + "1.1916536792", + "1.193728469", + "1.1923975758", + "1.2067887933", + "1.2085109552", + "1.2085109552", + "1.2151565379", + "1.2151565379", + "1.2151565379", + "1.2151565379", + "1.2151565379", + "1.2151565379", + "1.2151565379", + "1.2151565379", + "1.2110771752", + "1.2114229124", + "1.2049912048", + "1.2154836794", + "1.2145784375", + "1.2106802679", + "1.2089375943", + "1.2102561641", + "1.2067542836", + "1.2016765353", + "1.2050216609", + "1.2104674277", + "1.205929236", + "1.1909292799", + "1.1993003948", + "1.1940250096", + "1.2101729506", + "1.2054756614", + "1.2096092307", + "1.1875695201", + "1.1821693363", + "1.1962356914", + "1.2068961004", + "1.2236931434", + "1.2061028532", + "1.1961077347", + "1.1947899171", + "1.1755395372", + "1.1884180262", + "1.2472904712", + "1.2421385595", + "1.3090348168", + "1.2751955608", + "1.21238692", + "1.2161131768", + "1.2188466439", + "1.2117425624", + "1.2117425624", + "1.1931186602", + "1.1960228065", + "1.1879222898", + "1.2234479885", + "1.160225439", + "1.1381345256", + "1.1559988819", + "1.1427278866", + "1.143153479", + "1.2614051926", + "1.2685956434", + "1.2900366563", + "1.0946329406", + "1.2643818939", + "1.271057128", + "1.2556940357", + "1.2753280409", + "1.2645151269", + "1.2695816132", + "1.2610853356", + "1.2541352305", + "1.2450055334", + "1.2456636538", + "1.264577577", + "1.2376961331", + "1.2197319226", + "1.3136198635", + "1.3149937372", + "1.2843053249", + "1.3418850155", + "1.279463603", + "1.2849575458", + "1.2819965207", + "1.3067035058", + "1.295881057", + "1.204037985", + "1.1751278955", + "1.1363168355", + "1.1142155423", + "1.105573736", + "1.1004535449", + "1.1373251706", + "1.1398202965", + "1.1116322276", + "1.0999942737", + "1.1035807827", + "1.1725338935", + "1.1792422756", + "1.148871329", + "1.2727894022", + "1.2672745068", + "1.269615558", + "1.2273386318", + "1.2234846523", + "1.261391226", + "1.2532144117", + "1.2219723892", + "1.2235317479", + "1.2415517416", + "1.1982469469", + "1.1874108179", + "1.1885713704", + "1.2220577118", + "1.2102341591", + "1.1916073019", + "1.2105959242", + "1.1919279255", + "1.2057428677", + "1.1999602967", + "1.1988919147", + "1.2194503664", + "1.215237819", + "1.1981187736", + "1.2323471476", + "1.2171129059", + "1.2222252149", + "1.2216185294", + "1.186016899", + "1.1819966908", + "1.1665293392", + "1.1848758444", + "1.1818094696", + "1.1561178758", + "1.1391051279", + "1.133797477", + "1.1385392616", + "1.1376806509", + "1.1704466108", + "1.169465949", + "1.1935057466", + "1.1713967196", + "1.1318887276", + "1.1350531384", + "1.1601150304", + "1.1564061463", + "1.1321555296", + "1.1246981797", + "1.127051439", + "1.1362289739", + "1.061994877", + "1.1045979778", + "1.0888942071", + "1.0827324439", + "1.0764521991", + "1.0643495815", + "1.0675199209", + "1.1096920103", + "1.5440838415", + "1.6288620406", + "1.5413974655", + "1.5265797534", + "1.5049071206", + "1.0585847795", + "1.0773891855", + "1.1273220506", + "1.0889612986", + "1.1041985016", + "1.2177356392", + "1.1715062463", + "1.1931579205", + "1.1518245744", + "1.0651628859", + "1.0775452288", + "1.0840363", + "1.1444628368", + "1.1356633042", + "1.1337445732", + "1.1597468543", + "1.1570544187", + "1.1482863631", + "1.1798069867", + "1.1878904512", + "1.172079178", + "1.1454609282", + "1.1401153551", + "1.145526031", + "1.1342328898", + "1.079201995", + "1.0842868169", + "1.0835315934", + "1.1303431779", + "1.0857728985", + "1.0682247001", + "1.1456495063", + "1.0989168665", + "1.073999404", + "1.0870348952", + "1.0576503816", + "1.0228640234", + "1.1069520592", + "1.1093058456", + "1.1140830553", + "1.1194286533", + "1.0851276275", + "1.1457833768", + "1.1526194922", + "1.1491304897", + "1.1617955551", + "1.1478795123", + "1.1276636061", + "1.1190628374", + "1.1657147056", + "1.1849929783", + "1.2356719982", + "1.078594382", + "1.0477670879", + "1.1407728018", + "1.1397561019", + "1.1269770262", + "1.0839017391", + "1.1487250533", + "1.1396683011", + "1.1423205634", + "1.1734598687", + "1.1151187355", + "1.1003850327", + "1.0820099044", + "1.1103255431", + "1.0818326178", + "1.1369785351", + "1.1679719351", + "1.1906047829", + "1.1472886059", + "1.1186348174", + "1.1388817141", + "1.1186353257", + "1.1050213508", + "1.0697662799", + "1.1047158394", + "1.0358053635", + "1.0530707345", + "1.1358794455", + "1.1242447847", + "1.1213463584", + "1.1315006656", + "1.1398635511", + "1.1291861899", + "1.1411267575", + "1.1295933", + "1.1271317934", + "1.0955426618", + "1.1015375676", + "1.1077955648", + "1.0949500194", + "1.1284886563", + "1.060717868", + "1.1192158083", + "1.1163605757", + "1.1066011082", + "1.1058262318", + "1.1319683566", + "1.1085771198", + "1.0782709818", + "0.9929428824", + "1.0047474272", + "1.0057647031", + "0.9497879259", + "0.9619148464", + "0.9586264444", + "0.9399522453", + "0.948634197", + "0.9445934101", + "0.9346302603", + "0.9604312869", + "0.9571199502", + "0.9204906719", + "0.9390291046", + "0.8967878456", + "0.8994667844", + "0.9134571997", + "0.9149583094", + "0.9016284643", + "0.8911070702", + "0.9178615025", + "0.9037845554", + "0.8637782583", + "0.8711417939", + "1.0407093574", + "0.8610428486", + "0.8655872029", + "0.8691909768", + "0.8651383686", + "0.8322563419", + "0.8620650167", + "0.8821242589", + "0.8841169826", + "0.8821993832", + "0.8655162942", + "0.8643563646", + "0.8301199548", + "0.8323957563", + "0.9582791498", + "0.9694735059", + "0.8557602816", + "0.8614176934", + "0.8514890018", + "0.8156208212", + "0.8412292181", + "0.8319641036", + "0.8240993558", + "0.8232454254", + "0.8307699813", + "0.8247625075", + "0.8438314264", + "0.8377551096", + "0.8494774604", + "0.8442446846", + "0.8310284354", + "0.8190947337", + "0.8287554596", + "0.8246019753", + "0.8305042779", + "0.8225559331", + "0.7979953974", + "0.8074083639", + "0.8012399485", + "0.8292711361", + "0.8269661885", + "0.2811209208", + "0.2949520436", + "0.3076441543", + "0.2164364426", + "0.2200603415", + "0.2088471983", + "0.2248975962", + "0.2054475084", + "0.2018708073", + "0.2187878662", + "0.208588858", + "0.2131476298", + "0.2212006515", + "0.206985815", + "0.1988106084", + "0.2589015879", + "0.2353638146", + "0.2356808406", + "0.0745092087", + "0.0", + "0.0877597987", + "0.1918058749", + "0.162714742", + "0.2222261886", + "0.241041208", + "0.2608069662", + "0.2369166565", + "0.2186200312", + "0.2471332073", + "0.2634383988", + "0.270794799", + "0.253192976", + "0.4078505976", + "0.4140218547", + "0.4177395122", + "0.4530016038", + "0.4070132218", + "0.4326890295", + "0.3696000569", + "0.3524816188", + "0.6718074673", + "0.6827961559", + "0.6168674464", + "0.6181443228", + "0.5763274749", + "0.5927466459", + "0.5911303118", + "0.6148694412", + "0.60229398", + "0.5800911603", + "0.761282166", + "0.7675815016", + "0.7475831962", + "0.7601116421", + "0.7586376444", + "0.7270394346", + "0.7368385741", + "0.7857671241", + "0.8211912872", + "0.7960041079", + "0.7766923057", + "0.7255462305", + "0.7373448312", + "0.737038281", + "0.7678541764", + "0.7682118722", + "0.7009293511", + "0.8387019575", + "0.8432855987", + "0.8530291747", + "0.8327907188", + "0.7944860386", + "0.8638795354", + "0.8448432119", + "0.8497049001", + "0.7864930537", + "0.8182051671", + "0.8268412258", + "0.83849898", + "0.8209344405", + "0.8075701249", + "0.7719371433", + "0.7710227709", + "0.7774894607", + "0.8533277434", + "0.8334442557", + "0.9088271541", + "0.862837601", + "0.8171800243", + "0.8233850612", + "0.8283253506", + "0.8230166919", + "0.8172150909", + "0.8446553599", + "0.8267988961", + "0.8187494025", + "0.8097364355", + "0.8316739125", + "0.8261720677", + "0.8278059597", + "0.7917558686", + "0.79391234", + "0.7670381271", + "0.8503018176", + "0.8260400413", + "0.8113982277", + "0.7916668818", + "0.9273905725", + "0.9306503808", + "0.9585573621", + "0.9131931831", + "0.9172964991", + "0.9313449786", + "0.9450614444", + "0.9687006656", + "0.9098959739", + "0.887909806", + "0.9165160385", + "0.8847666939", + "0.8880805192", + "0.901047766", + "0.8814024011", + "0.8886647453", + "0.8742998924", + "0.8702114635", + "0.9519550962", + "0.9441465618", + "0.8984657523", + "0.919232715", + "0.9159134443", + "0.9691228038", + "0.8965211581", + "0.8807323812", + "0.8983649081", + "0.8991880238", + "0.900617886", + "0.926038856", + "0.9379635054", + "0.9964275256", + "0.9998139198", + "0.9828595973", + "0.968091735", + "0.9488656021", + "0.9179997228", + "1.2792817846", + "1.3037222611", + "1.2675669826", + "1.2782175873", + "1.2554620528", + "1.2417104319", + "1.3320588174", + "1.3609030025", + "1.3620209247", + "1.2862900601", + "1.2838221848", + "1.2838889004", + "1.2776790062", + "1.2957662148", + "1.271783359", + "1.2476355285", + "1.2104324186", + "1.2185754162", + "1.1967568376", + "1.2174884871", + "1.1757729168", + "1.1902604497", + "1.1919128759", + "1.1975287169", + "1.1900359015", + "1.1895705024", + "1.1868313545", + "1.1771337274", + "1.1948409497", + "1.1749873141", + "1.177434465", + "1.1731746306", + "1.1878330776", + "1.2069331797", + "1.150231061", + "1.1726318352", + "1.180669466", + "1.1798115564", + "1.163068211", + "1.1522903715", + "1.1524215292", + "1.1571141768", + "1.1604309506", + "1.1931515626", + "1.2243536511", + "1.2192816732", + "1.1432234027", + "1.1441146877", + "1.139366376", + "1.1454156261", + "1.0664473081", + "0.963403991", + "0.977036504", + "1.2162636057", + "1.4241142315", + "1.1777547946", + "1.2382700801", + "1.2396620291", + "1.2155254217", + "1.2232039249", + "1.2459243159", + "1.235725848", + "1.253134944", + "1.2542890054", + "1.2508516754", + "1.250512717", + "1.2772971893", + "1.2472546716", + "1.2508939501", + "1.2547185316", + "1.2549380654", + "1.218290701", + "1.2231670162", + "1.2442130563", + "1.2246652433", + "1.2320059904", + "1.183917405", + "1.1763654993", + "1.2070780803", + "1.2032538333", + "1.2156029255", + "1.2204605613", + "1.215105207", + "1.2146686368", + "1.2057197656", + "1.2177361858", + "1.1953854445", + "1.2113339631", + "1.2200467022", + "1.2157614203", + "1.2239589867", + "1.2392152082", + "1.2346845557", + "1.1757788517", + "1.2135293619", + "1.2040307585", + "1.1661248298", + "1.4363001573", + "1.4689368151", + "1.4344133758", + "1.4430922293", + "1.4169826855", + "1.2307728456", + "1.0840430737", + "1.0760756484", + "1.1294107595", + "1.0926828448", + "1.0977233359", + "1.0954927378", + "1.0831463171", + "1.0880889182", + "1.0413386337", + "1.0966341098", + "1.0909963585", + "1.1364817814", + "1.1145769596", + "1.1069317234", + "1.0942618494", + "1.0071507141", + "1.0110683302", + "1.1192230554", + "1.1017790591", + "1.1057263716", + "1.1005387206", + "1.0731225878", + "1.1621979528", + "1.1097675189", + "1.1098138938", + "1.2068627637", + "1.2374097265", + "1.1928215402", + "1.1998139116", + "1.1725775668", + "1.177965365", + "1.1771324871", + "1.1692991715", + "1.1119197896", + "1.2605335419", + "1.3146985094", + "1.2817214327", + "1.2709198318", + "1.2782257464", + "1.2188209078", + "1.2314217387", + "1.2384793517", + "1.2337173194", + "1.2830803609", + "1.2890672331", + "1.2984660822", + "1.3105574624", + "1.2457335024", + "1.2875222235", + "1.2856538072", + "1.212068245", + "1.210195974", + "1.2383917477", + "1.2314951168", + "1.2833138681", + "1.1869897569", + "1.1323190985", + "1.1501328294", + "1.1128774336", + "1.1452771611", + "1.2285079219", + "1.2417502781", + "1.2566665055", + "1.2719029127", + "1.1856715082", + "1.1180605573", + "1.1784432752", + "1.2511475695", + "1.0969820643", + "1.1258406664", + "1.131962915", + "1.1887522869", + "1.142082405", + "1.1485960508", + "1.1533783968", + "1.1346270361", + "1.160873583", + "1.228151285", + "1.2347054492", + "1.2624909642", + "1.2754939544", + "1.2721142544", + "1.150751174", + "1.1777954811", + "1.1410845256", + "1.1465017441", + "1.198486356", + "1.2307995773", + "1.2227349557", + "1.2311504191", + "1.2182450764", + "1.2053519904", + "1.2098984784", + "1.2635237703", + "1.3189095917", + "1.4156669129", + "1.3287913308", + "1.3281610259", + "1.3559867776", + "1.2933744179", + "1.3602205372", + "1.3552666107", + "1.32024151", + "1.3295049757", + "1.2247910946", + "1.5163481599", + "1.4425028512", + "1.4516918716", + "1.3792014993", + "1.3914923409", + "1.3811072414", + "1.4833108505", + "1.4105424883", + "1.4487301032", + "1.4428129774", + "1.4206974594", + "1.3499246729", + "1.3526695164", + "1.3973280665", + "1.3910888249", + "1.3956776255", + "1.3610760377", + "1.3526570132", + "1.3446201718", + "1.4042692933", + "1.3630979374", + "1.3707666398", + "1.3412874686", + "1.2940343883", + "1.3975970406", + "1.3356811517", + "1.328814507", + "1.3490427389", + "1.4251869965", + "1.4374585551", + "1.4460474183", + "1.4411596497", + "1.4349549233", + "1.4247951285", + "1.4238132397", + "1.4171601578", + "1.5353550353", + "1.5162383104", + "1.3901734303", + "1.4394587733", + "1.4393860914", + "1.433026863", + "1.4355396335", + "1.5016221336", + "1.4961721112", + "1.4510505718", + "1.4370152282", + "1.4343623261", + "1.4228662421", + "1.4415996358", + "1.4100760116", + "1.4010318613", + "1.3968703014", + "1.4124309953", + "1.4079013062", + "1.3987993585", + "1.4053692729", + "1.4200445867", + "1.4347951592", + "1.443729526", + "1.4701942137", + "1.4217248212", + "1.4457365889", + "1.4566616125", + "1.4003499671", + "1.4546697062", + "1.4296018539", + "1.4055392648", + "1.405040494", + "1.4127338111", + "1.4066987014", + "1.3798307783", + "1.3877758364", + "1.3909180458", + "1.3621983303" + ] + }, + "essential_compounds": [ + "12ppd_S", + "26dap_M", + "2ddglcn", + "34dhpha", + "34dhphe", + "3hphac", + "3mop", + "4abz", + "4hbz", + "4hoxpacd", + "5htrp", + "5mta", + "Lcyst", + "ac", + "acald", + "acgam", + "actn_R", + "adn", + "adocbl", + "akg", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arg_L", + "asn_L", + "aso3", + "aso4", + "asp_L", + "bhb", + "btd_RR", + "butso3", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cit", + "cl", + "co2", + "cobalt2", + "csn", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dgsn", + "diact", + "din", + "dms", + "dmso", + "dopa", + "drib", + "duri", + "ethso3", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "fuc1p_L", + "fum", + "g6p", + "gal", + "galct_D", + "galctn_D", + "galt", + "galur", + "gam", + "gcald", + "glc_D", + "glcn", + "glcr", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gsn", + "gthrd", + "gua", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hexs", + "hg2", + "his_L", + "hista", + "hxan", + "ile_L", + "ins", + "isetac", + "k", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man6p", + "man", + "melib", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mops", + "mso3", + "na1", + "nac", + "nh4", + "ni2", + "nmn", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppa", + "ppi", + "pppn", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "raffin", + "rib_D", + "rmn", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "so4", + "spmd", + "srtn", + "succ", + "sucr", + "sulfac", + "taur", + "thm", + "thr_L", + "thymd", + "tre", + "trp_L", + "trypta", + "tsul", + "ttdca", + "tym", + "tyr_L", + "ura", + "urea", + "uri", + "val_L", + "xtsn", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_412.json b/agents/agora/agent_412.json new file mode 100644 index 0000000000000000000000000000000000000000..4d90c061f6d65f3f03cadd8142003e7980734d9c --- /dev/null +++ b/agents/agora/agent_412.json @@ -0,0 +1,1025 @@ +{ + "id": 412, + "name": "Fusobacterium_gonidiaformans_ATCC_25563", + "N_R": 850, + "taxonomy": { + "k": 412, + "tax_distance": [ + "2.5271944303", + "2.109316563", + "2.1026173339", + "2.329200041", + "2.0105999671", + "2.055728654", + "2.0370233562", + "2.0340807619", + "2.0980623602", + "2.0164182683", + "2.0334829717", + "2.1416052855", + "2.1146230638", + "2.3426370217", + "2.3909938388", + "2.4213263494", + "2.3016759515", + "2.3106000683", + "2.3460745439", + "1.8790588599", + "1.8143878832", + "1.5638666245", + "1.4972161921", + "1.3757365154", + "1.2015572366", + "1.1957460285", + "1.1923914571", + "1.1947525115", + "1.1789862215", + "1.1703004586", + "1.1727513647", + "1.2743373008", + "1.2838751036", + "1.2802411936", + "1.2959372622", + "1.2644356822", + "1.2871816263", + "1.3054875378", + "1.2864555748", + "1.5793962338", + "1.3242378551", + "1.2428767991", + "1.2496421053", + "1.2522496854", + "1.2490179434", + "1.2519913251", + "1.2470927202", + "1.2474777555", + "1.2416628447", + "1.2337016551", + "1.1752794771", + "1.1807918771", + "1.1750510438", + "1.1472047732", + "1.1537265173", + "1.1828285145", + "1.1567516277", + "1.1547356001", + "1.1754900057", + "1.173150111", + "1.1564082835", + "1.1817590551", + "1.1838338449", + "1.1825029517", + "1.1968941692", + "1.1986163311", + "1.1986163311", + "1.2052619138", + "1.2052619138", + "1.2052619138", + "1.2052619138", + "1.2052619138", + "1.2052619138", + "1.2052619138", + "1.2052619138", + "1.2011825511", + "1.2015282883", + "1.1950965807", + "1.2055890553", + "1.2046838134", + "1.2007856438", + "1.1990429702", + "1.20036154", + "1.1968596595", + "1.1917819112", + "1.1951270368", + "1.2005728036", + "1.1960346119", + "1.1810346558", + "1.1894057707", + "1.1841303855", + "1.2002783265", + "1.1955810373", + "1.1997146066", + "1.177674896", + "1.1722747122", + "1.1863410673", + "1.1970014763", + "1.2137985193", + "1.1962082291", + "1.1862131106", + "1.184895293", + "1.1656449131", + "1.1785234021", + "1.2373958471", + "1.2322439354", + "1.2991401927", + "1.2653009367", + "1.2024922959", + "1.2062185527", + "1.2089520198", + "1.2018479383", + "1.2018479383", + "1.1832240361", + "1.1861281824", + "1.1780276657", + "1.2135533644", + "1.1503308149", + "1.1282399015", + "1.1461042578", + "1.1328332625", + "1.1332588549", + "1.2515105685", + "1.2587010193", + "1.2801420322", + "1.0847383165", + "1.2544872698", + "1.2611625039", + "1.2457994116", + "1.2654334168", + "1.2546205028", + "1.2596869891", + "1.2511907115", + "1.2442406064", + "1.2351109093", + "1.2357690297", + "1.2546829529", + "1.227801509", + "1.2098372985", + "1.3037252394", + "1.3050991131", + "1.2744107008", + "1.3319903914", + "1.2695689789", + "1.2750629217", + "1.2721018966", + "1.2968088817", + "1.2859864329", + "1.1941433609", + "1.1652332714", + "1.1264222114", + "1.1043209182", + "1.0956791119", + "1.0905589208", + "1.1274305465", + "1.1299256724", + "1.1017376035", + "1.0900996496", + "1.0936861586", + "1.1626392694", + "1.1693476515", + "1.1389767049", + "1.2628947781", + "1.2573798827", + "1.2597209339", + "1.2174440077", + "1.2135900282", + "1.2514966019", + "1.2433197876", + "1.2120777651", + "1.2136371238", + "1.2316571175", + "1.1883523228", + "1.1775161938", + "1.1786767463", + "1.2121630877", + "1.200339535", + "1.1817126778", + "1.2007013001", + "1.1820333014", + "1.1958482436", + "1.1900656726", + "1.1889972906", + "1.2095557423", + "1.2053431949", + "1.1882241495", + "1.2224525235", + "1.2072182818", + "1.2123305908", + "1.2117239053", + "1.1761222749", + "1.1721020667", + "1.1566347151", + "1.1749812203", + "1.1719148455", + "1.1462232517", + "1.1292105038", + "1.1239028529", + "1.1286446375", + "1.1277860268", + "1.1605519867", + "1.1595713249", + "1.1836111225", + "1.1615020955", + "1.1219941035", + "1.1251585143", + "1.1502204063", + "1.1465115222", + "1.1222609055", + "1.1148035556", + "1.1171568149", + "1.1263343498", + "1.0521002529", + "1.0947033537", + "1.078999583", + "1.0728378198", + "1.066557575", + "1.0544549574", + "1.0576252968", + "1.0997973862", + "1.5341892174", + "1.6189674165", + "1.5315028414", + "1.5166851293", + "1.4950124965", + "1.0486901554", + "1.0674945614", + "1.1174274265", + "1.0790666745", + "1.0943038775", + "1.2078410151", + "1.1616116222", + "1.1832632964", + "1.1419299503", + "1.0552682618", + "1.0676506047", + "1.0741416759", + "1.1345682127", + "1.1257686801", + "1.1238499491", + "1.1498522302", + "1.1471597946", + "1.138391739", + "1.1699123626", + "1.1779958271", + "1.1621845539", + "1.1355663041", + "1.130220731", + "1.1356314069", + "1.1243382657", + "1.0693073709", + "1.0743921928", + "1.0736369693", + "1.1204485538", + "1.0758782744", + "1.058330076", + "1.1357548822", + "1.0890222424", + "1.0641047799", + "1.0771402711", + "1.0477557575", + "1.0129693993", + "1.0970574351", + "1.0994112215", + "1.1041884312", + "1.1095340292", + "1.0752330034", + "1.1358887527", + "1.1427248681", + "1.1392358656", + "1.151900931", + "1.1379848882", + "1.117768982", + "1.1091682133", + "1.1558200815", + "1.1750983542", + "1.2257773741", + "1.0686997579", + "1.0378724638", + "1.1308781777", + "1.1298614778", + "1.1170824021", + "1.074007115", + "1.1388304292", + "1.129773677", + "1.1324259393", + "1.1635652446", + "1.1052241114", + "1.0904904086", + "1.0721152803", + "1.100430919", + "1.0719379937", + "1.127083911", + "1.158077311", + "1.1807101588", + "1.1373939818", + "1.1087401933", + "1.12898709", + "1.1087407016", + "1.0951267267", + "1.0598716558", + "1.0948212153", + "1.0259107394", + "1.0431761104", + "1.1259848214", + "1.1143501606", + "1.1114517343", + "1.1216060415", + "1.129968927", + "1.1192915658", + "1.1312321334", + "1.1196986759", + "1.1172371693", + "1.0856480377", + "1.0916429435", + "1.0979009407", + "1.0850553953", + "1.1185940322", + "1.0508232439", + "1.1093211842", + "1.1064659516", + "1.0967064841", + "1.0959316077", + "1.1220737325", + "1.0986824957", + "1.0683763577", + "0.9830482583", + "0.9948528031", + "0.995870079", + "0.9398933018", + "0.9520202223", + "0.9487318203", + "0.9300576212", + "0.9387395729", + "0.934698786", + "0.9247356362", + "0.9505366628", + "0.9472253261", + "0.9105960478", + "0.9291344805", + "0.8868932215", + "0.8895721603", + "0.9035625756", + "0.9050636853", + "0.8917338402", + "0.8812124461", + "0.9079668784", + "0.8938899313", + "0.8538836342", + "0.8612471698", + "1.0308147333", + "0.8511482245", + "0.8556925788", + "0.8592963527", + "0.8552437445", + "0.8223617178", + "0.8521703926", + "0.8722296348", + "0.8742223585", + "0.8723047591", + "0.8556216701", + "0.8544617405", + "0.8202253307", + "0.8225011322", + "0.9483845257", + "0.9595788818", + "0.8458656575", + "0.8515230693", + "0.8415943777", + "0.8057261971", + "0.831334594", + "0.8220694795", + "0.8142047317", + "0.8133508013", + "0.8208753572", + "0.8148678834", + "0.8339368023", + "0.8278604855", + "0.8395828363", + "0.8343500605", + "0.8211338113", + "0.8092001096", + "0.8188608355", + "0.8147073512", + "0.8206096538", + "0.812661309", + "0.7881007733", + "0.7975137398", + "0.7913453244", + "0.819376512", + "0.8170715644", + "0.2712262967", + "0.2850574195", + "0.2977495302", + "0.2065418185", + "0.2101657174", + "0.1989525742", + "0.2150029721", + "0.1955528843", + "0.1919761832", + "0.2088932421", + "0.1986942339", + "0.2032530057", + "0.2113060274", + "0.1970911909", + "0.1889159843", + "0.2490069638", + "0.2254691905", + "0.2257862165", + "0.0932523934", + "0.0877597987", + "0.0", + "0.1819112508", + "0.1528201179", + "0.2123315645", + "0.2311465839", + "0.2509123421", + "0.2270220324", + "0.2087254071", + "0.2372385832", + "0.2535437747", + "0.2609001749", + "0.2432983519", + "0.3979559735", + "0.4041272306", + "0.4078448881", + "0.4431069797", + "0.3971185977", + "0.4227944054", + "0.3597054328", + "0.3425869947", + "0.6619128432", + "0.6729015318", + "0.6069728223", + "0.6082496987", + "0.5664328508", + "0.5828520218", + "0.5812356877", + "0.6049748171", + "0.5923993559", + "0.5701965362", + "0.7513875419", + "0.7576868775", + "0.7376885721", + "0.750217018", + "0.7487430203", + "0.7171448105", + "0.72694395", + "0.7758725", + "0.8112966631", + "0.7861094838", + "0.7667976816", + "0.7156516064", + "0.7274502071", + "0.7271436569", + "0.7579595523", + "0.7583172481", + "0.691034727", + "0.8288073334", + "0.8333909746", + "0.8431345506", + "0.8228960947", + "0.7845914145", + "0.8539849113", + "0.8349485878", + "0.839810276", + "0.7765984296", + "0.808310543", + "0.8169466017", + "0.8286043559", + "0.8110398164", + "0.7976755008", + "0.7620425192", + "0.7611281468", + "0.7675948366", + "0.8434331193", + "0.8235496316", + "0.89893253", + "0.8529429769", + "0.8072854002", + "0.8134904371", + "0.8184307265", + "0.8131220678", + "0.8073204668", + "0.8347607358", + "0.816904272", + "0.8088547784", + "0.7998418114", + "0.8217792884", + "0.8162774436", + "0.8179113356", + "0.7818612445", + "0.7840177159", + "0.757143503", + "0.8404071935", + "0.8161454172", + "0.8015036036", + "0.7817722577", + "0.9174959484", + "0.9207557567", + "0.948662738", + "0.903298559", + "0.907401875", + "0.9214503545", + "0.9351668203", + "0.9588060415", + "0.9000013498", + "0.8780151819", + "0.9066214144", + "0.8748720698", + "0.8781858951", + "0.8911531419", + "0.871507777", + "0.8787701212", + "0.8644052683", + "0.8603168394", + "0.9420604721", + "0.9342519377", + "0.8885711282", + "0.9093380909", + "0.9060188202", + "0.9592281797", + "0.886626534", + "0.8708377571", + "0.888470284", + "0.8892933997", + "0.8907232619", + "0.9161442319", + "0.9280688813", + "0.9865329015", + "0.9899192957", + "0.9729649732", + "0.9581971109", + "0.938970978", + "0.9081050987", + "1.2693871605", + "1.293827637", + "1.2576723585", + "1.2683229632", + "1.2455674287", + "1.2318158078", + "1.3221641933", + "1.3510083784", + "1.3521263006", + "1.276395436", + "1.2739275607", + "1.2739942763", + "1.2677843821", + "1.2858715907", + "1.2618887349", + "1.2377409044", + "1.2005377945", + "1.2086807921", + "1.1868622135", + "1.207593863", + "1.1658782927", + "1.1803658256", + "1.1820182518", + "1.1876340928", + "1.1801412774", + "1.1796758783", + "1.1769367304", + "1.1672391033", + "1.1849463256", + "1.16509269", + "1.1675398409", + "1.1632800065", + "1.1779384535", + "1.1970385556", + "1.1403364369", + "1.1627372111", + "1.1707748419", + "1.1699169323", + "1.1531735869", + "1.1423957474", + "1.1425269051", + "1.1472195527", + "1.1505363265", + "1.1832569385", + "1.214459027", + "1.2093870491", + "1.1333287786", + "1.1342200636", + "1.1294717519", + "1.135521002", + "1.056552684", + "0.9535093669", + "0.9671418799", + "1.2063689816", + "1.4142196074", + "1.1678601705", + "1.228375456", + "1.229767405", + "1.2056307976", + "1.2133093008", + "1.2360296918", + "1.2258312239", + "1.2432403199", + "1.2443943813", + "1.2409570513", + "1.2406180929", + "1.2674025652", + "1.2373600475", + "1.240999326", + "1.2448239075", + "1.2450434413", + "1.2083960769", + "1.2132723921", + "1.2343184322", + "1.2147706192", + "1.2221113663", + "1.1740227809", + "1.1664708752", + "1.1971834562", + "1.1933592092", + "1.2057083014", + "1.2105659372", + "1.2052105829", + "1.2047740127", + "1.1958251415", + "1.2078415617", + "1.1854908204", + "1.201439339", + "1.2101520781", + "1.2058667962", + "1.2140643626", + "1.2293205841", + "1.2247899316", + "1.1658842276", + "1.2036347378", + "1.1941361344", + "1.1562302057", + "1.4264055332", + "1.459042191", + "1.4245187517", + "1.4331976052", + "1.4070880614", + "1.2208782215", + "1.0741484496", + "1.0661810243", + "1.1195161354", + "1.0827882207", + "1.0878287118", + "1.0855981137", + "1.073251693", + "1.0781942941", + "1.0314440096", + "1.0867394857", + "1.0811017344", + "1.1265871573", + "1.1046823355", + "1.0970370993", + "1.0843672253", + "0.99725609", + "1.0011737061", + "1.1093284313", + "1.091884435", + "1.0958317475", + "1.0906440965", + "1.0632279637", + "1.1523033287", + "1.0998728948", + "1.0999192697", + "1.1969681396", + "1.2275151024", + "1.1829269161", + "1.1899192875", + "1.1626829427", + "1.1680707409", + "1.167237863", + "1.1594045474", + "1.1020251655", + "1.2506389178", + "1.3048038853", + "1.2718268086", + "1.2610252077", + "1.2683311223", + "1.2089262837", + "1.2215271146", + "1.2285847276", + "1.2238226953", + "1.2731857368", + "1.279172609", + "1.2885714581", + "1.3006628383", + "1.2358388783", + "1.2776275994", + "1.2757591831", + "1.2021736209", + "1.2003013499", + "1.2284971236", + "1.2216004927", + "1.273419244", + "1.1770951328", + "1.1224244744", + "1.1402382053", + "1.1029828095", + "1.135382537", + "1.2186132978", + "1.231855654", + "1.2467718814", + "1.2620082886", + "1.1757768841", + "1.1081659332", + "1.1685486511", + "1.2412529454", + "1.0870874402", + "1.1159460423", + "1.1220682909", + "1.1788576628", + "1.1321877809", + "1.1387014267", + "1.1434837727", + "1.124732412", + "1.1509789589", + "1.2182566609", + "1.2248108251", + "1.2525963401", + "1.2655993303", + "1.2622196303", + "1.1408565499", + "1.167900857", + "1.1311899015", + "1.13660712", + "1.1885917319", + "1.2209049532", + "1.2128403316", + "1.221255795", + "1.2083504523", + "1.1954573663", + "1.2000038543", + "1.2536291462", + "1.3090149676", + "1.4057722888", + "1.3188967067", + "1.3182664018", + "1.3460921535", + "1.2834797938", + "1.3503259131", + "1.3453719866", + "1.3103468859", + "1.3196103516", + "1.2148964705", + "1.5064535358", + "1.4326082271", + "1.4417972475", + "1.3693068752", + "1.3815977168", + "1.3712126173", + "1.4734162264", + "1.4006478642", + "1.4388354791", + "1.4329183533", + "1.4108028353", + "1.3400300488", + "1.3427748923", + "1.3874334424", + "1.3811942008", + "1.3857830014", + "1.3511814136", + "1.3427623891", + "1.3347255477", + "1.3943746692", + "1.3532033133", + "1.3608720157", + "1.3313928445", + "1.2841397642", + "1.3877024165", + "1.3257865276", + "1.3189198829", + "1.3391481148", + "1.4152923724", + "1.427563931", + "1.4361527942", + "1.4312650256", + "1.4250602992", + "1.4149005044", + "1.4139186156", + "1.4072655337", + "1.5254604112", + "1.5063436863", + "1.3802788062", + "1.4295641492", + "1.4294914673", + "1.4231322389", + "1.4256450094", + "1.4917275095", + "1.4862774871", + "1.4411559477", + "1.4271206041", + "1.424467702", + "1.412971618", + "1.4317050117", + "1.4001813875", + "1.3911372372", + "1.3869756773", + "1.4025363712", + "1.3980066821", + "1.3889047344", + "1.3954746488", + "1.4101499626", + "1.4249005351", + "1.4338349019", + "1.4602995896", + "1.4118301971", + "1.4358419648", + "1.4467669884", + "1.390455343", + "1.4447750821", + "1.4197072298", + "1.3956446407", + "1.3951458699", + "1.402839187", + "1.3968040773", + "1.3699361542", + "1.3778812123", + "1.3810234217", + "1.3523037062" + ] + }, + "essential_compounds": [ + "12ppd_S", + "26dap_M", + "2ddglcn", + "34dhpha", + "34dhphe", + "3hphac", + "3mop", + "4abz", + "4hbz", + "4hoxpacd", + "5htrp", + "Lcyst", + "ac", + "acald", + "acgam", + "actn_R", + "adn", + "adocbl", + "akg", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arg_L", + "asn_L", + "aso3", + "aso4", + "asp_L", + "btd_RR", + "butso3", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cit", + "cl", + "co2", + "cobalt2", + "csn", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dgsn", + "diact", + "din", + "dms", + "dmso", + "dopa", + "drib", + "duri", + "ethso3", + "etoh", + "fe2", + "fe3", + "fecrm", + "fol", + "for", + "fru", + "fuc1p_L", + "fum", + "g6p", + "gal", + "galct_D", + "galctn_D", + "galt", + "galur", + "gam", + "gcald", + "glc_D", + "glcn", + "glcr", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gsn", + "gthrd", + "gua", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hexs", + "hg2", + "his_L", + "hista", + "hxan", + "ile_L", + "ins", + "isetac", + "k", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "lyx_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man6p", + "man", + "melib", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mops", + "mso3", + "na1", + "nac", + "nh4", + "ni2", + "nmn", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "pac", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppa", + "ppi", + "pppn", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "raffin", + "rib_D", + "rmn", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "so4", + "spmd", + "srtn", + "succ", + "sucr", + "sulfac", + "taur", + "thm", + "thr_L", + "thymd", + "tma", + "tmao", + "tre", + "trp_L", + "trypta", + "tsul", + "ttdca", + "tym", + "tyr_L", + "ura", + "uri", + "val_L", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_413.json b/agents/agora/agent_413.json new file mode 100644 index 0000000000000000000000000000000000000000..20b4750b19d92ad8abbccb25079b15b3b79d3d59 --- /dev/null +++ b/agents/agora/agent_413.json @@ -0,0 +1,1021 @@ +{ + "id": 413, + "name": "Fusobacterium_mortiferum_ATCC_9817", + "N_R": 876, + "taxonomy": { + "k": 413, + "tax_distance": [ + "2.5873715067", + "2.1694936394", + "2.1627944103", + "2.3893771174", + "2.0707770435", + "2.1159057304", + "2.0972004326", + "2.0942578383", + "2.1582394366", + "2.0765953447", + "2.0936600481", + "2.2017823619", + "2.1748001402", + "2.4028140981", + "2.4511709152", + "2.4815034258", + "2.3618530279", + "2.3707771447", + "2.4062516203", + "1.9392359363", + "1.8745649596", + "1.6240437009", + "1.5573932685", + "1.4359135918", + "1.261734313", + "1.2559231049", + "1.2525685335", + "1.2549295879", + "1.2391632979", + "1.230477535", + "1.2329284411", + "1.3345143772", + "1.34405218", + "1.34041827", + "1.3561143386", + "1.3246127586", + "1.3473587027", + "1.3656646142", + "1.3466326512", + "1.6395733102", + "1.3844149315", + "1.3030538755", + "1.3098191817", + "1.3124267618", + "1.3091950198", + "1.3121684015", + "1.3072697966", + "1.3076548319", + "1.3018399211", + "1.2938787315", + "1.2354565535", + "1.2409689535", + "1.2352281202", + "1.2073818496", + "1.2139035937", + "1.2430055909", + "1.2169287041", + "1.2149126765", + "1.2356670821", + "1.2333271874", + "1.2165853599", + "1.2419361315", + "1.2440109213", + "1.2426800281", + "1.2570712456", + "1.2587934075", + "1.2587934075", + "1.2654389902", + "1.2654389902", + "1.2654389902", + "1.2654389902", + "1.2654389902", + "1.2654389902", + "1.2654389902", + "1.2654389902", + "1.2613596275", + "1.2617053647", + "1.2552736571", + "1.2657661317", + "1.2648608898", + "1.2609627202", + "1.2592200466", + "1.2605386164", + "1.2570367359", + "1.2519589876", + "1.2553041132", + "1.26074988", + "1.2562116883", + "1.2412117322", + "1.2495828471", + "1.2443074619", + "1.2604554029", + "1.2557581137", + "1.259891683", + "1.2378519724", + "1.2324517886", + "1.2465181437", + "1.2571785527", + "1.2739755957", + "1.2563853055", + "1.246390187", + "1.2450723694", + "1.2258219895", + "1.2387004785", + "1.2975729235", + "1.2924210118", + "1.3593172691", + "1.3254780131", + "1.2626693723", + "1.2663956291", + "1.2691290962", + "1.2620250147", + "1.2620250147", + "1.2434011125", + "1.2463052588", + "1.2382047421", + "1.2737304408", + "1.2105078913", + "1.1884169779", + "1.2062813342", + "1.1930103389", + "1.1934359313", + "1.3116876449", + "1.3188780957", + "1.3403191086", + "1.1449153929", + "1.3146643462", + "1.3213395803", + "1.305976488", + "1.3256104932", + "1.3147975792", + "1.3198640655", + "1.3113677879", + "1.3044176828", + "1.2952879857", + "1.2959461061", + "1.3148600293", + "1.2879785854", + "1.2700143749", + "1.3639023158", + "1.3652761895", + "1.3345877772", + "1.3921674678", + "1.3297460553", + "1.3352399981", + "1.332278973", + "1.3569859581", + "1.3461635093", + "1.2543204373", + "1.2254103478", + "1.1865992878", + "1.1644979946", + "1.1558561883", + "1.1507359972", + "1.1876076229", + "1.1901027488", + "1.1619146799", + "1.150276726", + "1.153863235", + "1.2228163458", + "1.2295247279", + "1.1991537813", + "1.3230718545", + "1.3175569591", + "1.3198980103", + "1.2776210841", + "1.2737671046", + "1.3116736783", + "1.303496864", + "1.2722548415", + "1.2738142002", + "1.2918341939", + "1.2485293992", + "1.2376932702", + "1.2388538227", + "1.2723401641", + "1.2605166114", + "1.2418897542", + "1.2608783765", + "1.2422103778", + "1.25602532", + "1.250242749", + "1.249174367", + "1.2697328187", + "1.2655202713", + "1.2484012259", + "1.2826295999", + "1.2673953582", + "1.2725076672", + "1.2719009817", + "1.2362993513", + "1.2322791431", + "1.2168117915", + "1.2351582967", + "1.2320919219", + "1.2064003281", + "1.1893875802", + "1.1840799293", + "1.1888217139", + "1.1879631032", + "1.2207290631", + "1.2197484013", + "1.2437881989", + "1.2216791719", + "1.1821711799", + "1.1853355907", + "1.2103974827", + "1.2066885986", + "1.1824379819", + "1.174980632", + "1.1773338913", + "1.1865114262", + "1.1122773293", + "1.1548804301", + "1.1391766594", + "1.1330148962", + "1.1267346514", + "1.1146320338", + "1.1178023732", + "1.1599744626", + "1.5943662938", + "1.6791444929", + "1.5916799178", + "1.5768622057", + "1.5551895729", + "1.1088672318", + "1.1276716378", + "1.1776045029", + "1.1392437509", + "1.1544809539", + "1.2680180915", + "1.2217886986", + "1.2434403728", + "1.2021070267", + "1.1154453382", + "1.1278276811", + "1.1343187523", + "1.1947452891", + "1.1859457565", + "1.1840270255", + "1.2100293066", + "1.207336871", + "1.1985688154", + "1.230089439", + "1.2381729035", + "1.2223616303", + "1.1957433805", + "1.1903978074", + "1.1958084833", + "1.1845153421", + "1.1294844473", + "1.1345692692", + "1.1338140457", + "1.1806256302", + "1.1360553508", + "1.1185071524", + "1.1959319586", + "1.1491993188", + "1.1242818563", + "1.1373173475", + "1.1079328339", + "1.0731464757", + "1.1572345115", + "1.1595882979", + "1.1643655076", + "1.1697111056", + "1.1354100798", + "1.1960658291", + "1.2029019445", + "1.199412942", + "1.2120780074", + "1.1981619646", + "1.1779460584", + "1.1693452897", + "1.2159971579", + "1.2352754306", + "1.2859544505", + "1.1288768343", + "1.0980495402", + "1.1910552541", + "1.1900385542", + "1.1772594785", + "1.1341841914", + "1.1990075056", + "1.1899507534", + "1.1926030157", + "1.223742321", + "1.1654011878", + "1.150667485", + "1.1322923567", + "1.1606079954", + "1.1321150701", + "1.1872609874", + "1.2182543874", + "1.2408872352", + "1.1975710582", + "1.1689172697", + "1.1891641664", + "1.168917778", + "1.1553038031", + "1.1200487322", + "1.1549982917", + "1.0860878158", + "1.1033531868", + "1.1861618978", + "1.174527237", + "1.1716288107", + "1.1817831179", + "1.1901460034", + "1.1794686422", + "1.1914092098", + "1.1798757523", + "1.1774142457", + "1.1458251141", + "1.1518200199", + "1.1580780171", + "1.1452324717", + "1.1787711086", + "1.1110003203", + "1.1694982606", + "1.166643028", + "1.1568835605", + "1.1561086841", + "1.1822508089", + "1.1588595721", + "1.1285534341", + "1.0432253347", + "1.0550298795", + "1.0560471554", + "1.0000703782", + "1.0121972987", + "1.0089088967", + "0.9902346976", + "0.9989166493", + "0.9948758624", + "0.9849127126", + "1.0107137392", + "1.0074024025", + "0.9707731242", + "0.9893115569", + "0.9470702979", + "0.9497492367", + "0.963739652", + "0.9652407617", + "0.9519109166", + "0.9413895225", + "0.9681439548", + "0.9540670077", + "0.9140607106", + "0.9214242462", + "1.0909918097", + "0.9113253009", + "0.9158696552", + "0.9194734291", + "0.9154208209", + "0.8825387942", + "0.912347469", + "0.9324067112", + "0.9343994349", + "0.9324818355", + "0.9157987465", + "0.9146388169", + "0.8804024071", + "0.8826782086", + "1.0085616021", + "1.0197559582", + "0.9060427339", + "0.9117001457", + "0.9017714541", + "0.8659032735", + "0.8915116704", + "0.8822465559", + "0.8743818081", + "0.8735278777", + "0.8810524336", + "0.8750449598", + "0.8941138787", + "0.8880375619", + "0.8997599127", + "0.8945271369", + "0.8813108877", + "0.869377186", + "0.8790379119", + "0.8748844276", + "0.8807867302", + "0.8728383854", + "0.8482778497", + "0.8576908162", + "0.8515224008", + "0.8795535884", + "0.8772486408", + "0.3314033731", + "0.3452344959", + "0.3579266066", + "0.2667188949", + "0.2703427938", + "0.2591296506", + "0.2751800485", + "0.2557299607", + "0.2521532596", + "0.2690703185", + "0.2588713103", + "0.2634300821", + "0.2714831038", + "0.2572682673", + "0.2490930607", + "0.3091840402", + "0.2856462669", + "0.2859632929", + "0.1972984696", + "0.1918058749", + "0.1819112508", + "0.0", + "0.1157003717", + "0.2725086409", + "0.2913236603", + "0.3110894185", + "0.2871991088", + "0.2689024835", + "0.2974156596", + "0.3137208511", + "0.3210772513", + "0.3034754283", + "0.4581330499", + "0.464304307", + "0.4680219645", + "0.5032840561", + "0.4572956741", + "0.4829714818", + "0.4198825092", + "0.4027640711", + "0.7220899196", + "0.7330786082", + "0.6671498987", + "0.6684267751", + "0.6266099272", + "0.6430290982", + "0.6414127641", + "0.6651518935", + "0.6525764323", + "0.6303736126", + "0.8115646183", + "0.8178639539", + "0.7978656485", + "0.8103940944", + "0.8089200967", + "0.7773218869", + "0.7871210264", + "0.8360495764", + "0.8714737395", + "0.8462865602", + "0.826974758", + "0.7758286828", + "0.7876272835", + "0.7873207333", + "0.8181366287", + "0.8184943245", + "0.7512118034", + "0.8889844098", + "0.893568051", + "0.903311627", + "0.8830731711", + "0.8447684909", + "0.9141619877", + "0.8951256642", + "0.8999873524", + "0.836775506", + "0.8684876194", + "0.8771236781", + "0.8887814323", + "0.8712168928", + "0.8578525772", + "0.8222195956", + "0.8213052232", + "0.827771913", + "0.9036101957", + "0.883726708", + "0.9591096064", + "0.9131200533", + "0.8674624766", + "0.8736675135", + "0.8786078029", + "0.8732991442", + "0.8674975432", + "0.8949378122", + "0.8770813484", + "0.8690318548", + "0.8600188878", + "0.8819563648", + "0.87645452", + "0.878088412", + "0.8420383209", + "0.8441947923", + "0.8173205794", + "0.9005842699", + "0.8763224936", + "0.86168068", + "0.8419493341", + "0.9776730248", + "0.9809328331", + "1.0088398144", + "0.9634756354", + "0.9675789514", + "0.9816274309", + "0.9953438967", + "1.0189831179", + "0.9601784262", + "0.9381922583", + "0.9667984908", + "0.9350491462", + "0.9383629715", + "0.9513302183", + "0.9316848534", + "0.9389471976", + "0.9245823447", + "0.9204939158", + "1.0022375485", + "0.9944290141", + "0.9487482046", + "0.9695151673", + "0.9661958966", + "1.0194052561", + "0.9468036104", + "0.9310148335", + "0.9486473604", + "0.9494704761", + "0.9509003383", + "0.9763213083", + "0.9882459577", + "1.0467099779", + "1.0500963721", + "1.0331420496", + "1.0183741873", + "0.9991480544", + "0.9682821751", + "1.3295642369", + "1.3540047134", + "1.3178494349", + "1.3285000396", + "1.3057445051", + "1.2919928842", + "1.3823412697", + "1.4111854548", + "1.412303377", + "1.3365725124", + "1.3341046371", + "1.3341713527", + "1.3279614585", + "1.3460486671", + "1.3220658113", + "1.2979179808", + "1.2607148709", + "1.2688578685", + "1.2470392899", + "1.2677709394", + "1.2260553691", + "1.240542902", + "1.2421953282", + "1.2478111692", + "1.2403183538", + "1.2398529547", + "1.2371138068", + "1.2274161797", + "1.245123402", + "1.2252697664", + "1.2277169173", + "1.2234570829", + "1.2381155299", + "1.257215632", + "1.2005135133", + "1.2229142875", + "1.2309519183", + "1.2300940087", + "1.2133506633", + "1.2025728238", + "1.2027039815", + "1.2073966291", + "1.2107134029", + "1.2434340149", + "1.2746361034", + "1.2695641255", + "1.193505855", + "1.19439714", + "1.1896488283", + "1.1956980784", + "1.1167297604", + "1.0136864433", + "1.0273189563", + "1.266546058", + "1.4743966838", + "1.2280372469", + "1.2885525324", + "1.2899444814", + "1.265807874", + "1.2734863772", + "1.2962067682", + "1.2860083003", + "1.3034173963", + "1.3045714577", + "1.3011341277", + "1.3007951693", + "1.3275796416", + "1.2975371239", + "1.3011764024", + "1.3050009839", + "1.3052205177", + "1.2685731533", + "1.2734494685", + "1.2944955086", + "1.2749476956", + "1.2822884427", + "1.2341998573", + "1.2266479516", + "1.2573605326", + "1.2535362856", + "1.2658853778", + "1.2707430136", + "1.2653876593", + "1.2649510891", + "1.2560022179", + "1.2680186381", + "1.2456678968", + "1.2616164154", + "1.2703291545", + "1.2660438726", + "1.274241439", + "1.2894976605", + "1.284967008", + "1.226061304", + "1.2638118142", + "1.2543132108", + "1.2164072821", + "1.4865826096", + "1.5192192674", + "1.4846958281", + "1.4933746816", + "1.4672651378", + "1.2810552979", + "1.134325526", + "1.1263581007", + "1.1796932118", + "1.1429652971", + "1.1480057882", + "1.1457751901", + "1.1334287694", + "1.1383713705", + "1.091621086", + "1.1469165621", + "1.1412788108", + "1.1867642337", + "1.1648594119", + "1.1572141757", + "1.1445443017", + "1.0574331664", + "1.0613507825", + "1.1695055077", + "1.1520615114", + "1.1560088239", + "1.1508211729", + "1.1234050401", + "1.2124804051", + "1.1600499712", + "1.1600963461", + "1.257145216", + "1.2876921788", + "1.2431039925", + "1.2500963639", + "1.2228600191", + "1.2282478173", + "1.2274149394", + "1.2195816238", + "1.1622022419", + "1.3108159942", + "1.3649809617", + "1.332003885", + "1.3212022841", + "1.3285081987", + "1.2691033601", + "1.281704191", + "1.288761804", + "1.2839997717", + "1.3333628132", + "1.3393496854", + "1.3487485345", + "1.3608399147", + "1.2960159547", + "1.3378046758", + "1.3359362595", + "1.2623506973", + "1.2604784263", + "1.2886742", + "1.2817775691", + "1.3335963204", + "1.2372722092", + "1.1826015508", + "1.2004152817", + "1.1631598859", + "1.1955596134", + "1.2787903742", + "1.2920327304", + "1.3069489578", + "1.322185365", + "1.2359539605", + "1.1683430096", + "1.2287257275", + "1.3014300218", + "1.1472645166", + "1.1761231187", + "1.1822453673", + "1.2390347392", + "1.1923648573", + "1.1988785031", + "1.2036608491", + "1.1849094884", + "1.2111560353", + "1.2784337373", + "1.2849879015", + "1.3127734165", + "1.3257764067", + "1.3223967067", + "1.2010336263", + "1.2280779334", + "1.1913669779", + "1.1967841964", + "1.2487688083", + "1.2810820296", + "1.273017408", + "1.2814328714", + "1.2685275287", + "1.2556344427", + "1.2601809307", + "1.3138062226", + "1.369192044", + "1.4659493652", + "1.3790737831", + "1.3784434782", + "1.4062692299", + "1.3436568702", + "1.4105029895", + "1.405549063", + "1.3705239623", + "1.379787428", + "1.2750735469", + "1.5666306122", + "1.4927853035", + "1.5019743239", + "1.4294839516", + "1.4417747932", + "1.4313896937", + "1.5335933028", + "1.4608249406", + "1.4990125555", + "1.4930954297", + "1.4709799117", + "1.4002071252", + "1.4029519687", + "1.4476105188", + "1.4413712772", + "1.4459600778", + "1.41135849", + "1.4029394655", + "1.3949026241", + "1.4545517456", + "1.4133803897", + "1.4210490921", + "1.3915699209", + "1.3443168406", + "1.4478794929", + "1.385963604", + "1.3790969593", + "1.3993251912", + "1.4754694488", + "1.4877410074", + "1.4963298706", + "1.491442102", + "1.4852373756", + "1.4750775808", + "1.474095692", + "1.4674426101", + "1.5856374876", + "1.5665207627", + "1.4404558826", + "1.4897412256", + "1.4896685437", + "1.4833093153", + "1.4858220858", + "1.5519045859", + "1.5464545635", + "1.5013330241", + "1.4872976805", + "1.4846447784", + "1.4731486944", + "1.4918820881", + "1.4603584639", + "1.4513143136", + "1.4471527537", + "1.4627134476", + "1.4581837585", + "1.4490818108", + "1.4556517252", + "1.470327039", + "1.4850776115", + "1.4940119783", + "1.520476666", + "1.4720072735", + "1.4960190412", + "1.5069440648", + "1.4506324194", + "1.5049521585", + "1.4798843062", + "1.4558217171", + "1.4553229463", + "1.4630162634", + "1.4569811537", + "1.4301132306", + "1.4380582887", + "1.4412004981", + "1.4124807826" + ] + }, + "essential_compounds": [ + "12ppd_S", + "26dap_M", + "2ddglcn", + "34dhpha", + "34dhphe", + "3hphac", + "3mop", + "4abz", + "4hbz", + "4hoxpacd", + "5htrp", + "Lcyst", + "ac", + "acald", + "acgam", + "actn_R", + "adn", + "adocbl", + "akg", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arg_L", + "asn_L", + "aso3", + "aso4", + "asp_L", + "btd_RR", + "butso3", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cit", + "cl", + "co2", + "cobalt2", + "csn", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dgsn", + "diact", + "din", + "dopa", + "drib", + "duri", + "ethso3", + "etoh", + "fe2", + "fe3", + "fecrm", + "fol", + "for", + "fru", + "fuc1p_L", + "fum", + "g6p", + "gal", + "galct_D", + "galctn_D", + "galt", + "galur", + "gam", + "gcald", + "glc_D", + "glcn", + "glcr", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gsn", + "gthrd", + "gua", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hexs", + "hg2", + "his_L", + "hista", + "hxan", + "ile_L", + "ins", + "isetac", + "k", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "lyx_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man6p", + "man", + "melib", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mops", + "mso3", + "na1", + "nac", + "nh4", + "ni2", + "nmn", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "pac", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppa", + "ppi", + "pppn", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "raffin", + "rib_D", + "rmn", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "so4", + "spmd", + "srtn", + "succ", + "sucr", + "sulfac", + "taur", + "thm", + "thr_L", + "thymd", + "tre", + "trp_L", + "trypta", + "tsul", + "ttdca", + "tym", + "tyr_L", + "ura", + "uri", + "val_L", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_414.json b/agents/agora/agent_414.json new file mode 100644 index 0000000000000000000000000000000000000000..19f251c6e9a0a5b439e51ae68a5c9ffc43678dd9 --- /dev/null +++ b/agents/agora/agent_414.json @@ -0,0 +1,994 @@ +{ + "id": 414, + "name": "Fusobacterium_necrophorum_D12", + "N_R": 1488, + "taxonomy": { + "k": 414, + "tax_distance": [ + "2.5582803738", + "2.1404025065", + "2.1337032774", + "2.3602859845", + "2.0416859106", + "2.0868145975", + "2.0681092997", + "2.0651667054", + "2.1291483037", + "2.0475042118", + "2.0645689152", + "2.172691229", + "2.1457090073", + "2.3737229652", + "2.4220797823", + "2.4524122929", + "2.332761895", + "2.3416860118", + "2.3771604874", + "1.9101448034", + "1.8454738267", + "1.594952568", + "1.5283021356", + "1.4068224589", + "1.2326431801", + "1.226831972", + "1.2234774006", + "1.225838455", + "1.210072165", + "1.2013864021", + "1.2038373082", + "1.3054232443", + "1.3149610471", + "1.3113271371", + "1.3270232057", + "1.2955216257", + "1.3182675698", + "1.3365734813", + "1.3175415183", + "1.6104821773", + "1.3553237986", + "1.2739627426", + "1.2807280488", + "1.2833356289", + "1.2801038869", + "1.2830772686", + "1.2781786637", + "1.278563699", + "1.2727487882", + "1.2647875986", + "1.2063654206", + "1.2118778206", + "1.2061369873", + "1.1782907167", + "1.1848124608", + "1.213914458", + "1.1878375712", + "1.1858215436", + "1.2065759492", + "1.2042360545", + "1.187494227", + "1.2128449986", + "1.2149197884", + "1.2135888952", + "1.2279801127", + "1.2297022746", + "1.2297022746", + "1.2363478573", + "1.2363478573", + "1.2363478573", + "1.2363478573", + "1.2363478573", + "1.2363478573", + "1.2363478573", + "1.2363478573", + "1.2322684946", + "1.2326142318", + "1.2261825242", + "1.2366749988", + "1.2357697569", + "1.2318715873", + "1.2301289137", + "1.2314474835", + "1.227945603", + "1.2228678547", + "1.2262129803", + "1.2316587471", + "1.2271205554", + "1.2121205993", + "1.2204917142", + "1.215216329", + "1.23136427", + "1.2266669808", + "1.2308005501", + "1.2087608395", + "1.2033606557", + "1.2174270108", + "1.2280874198", + "1.2448844628", + "1.2272941726", + "1.2172990541", + "1.2159812365", + "1.1967308566", + "1.2096093456", + "1.2684817906", + "1.2633298789", + "1.3302261362", + "1.2963868802", + "1.2335782394", + "1.2373044962", + "1.2400379633", + "1.2329338818", + "1.2329338818", + "1.2143099796", + "1.2172141259", + "1.2091136092", + "1.2446393079", + "1.1814167584", + "1.159325845", + "1.1771902013", + "1.163919206", + "1.1643447984", + "1.282596512", + "1.2897869628", + "1.3112279757", + "1.11582426", + "1.2855732133", + "1.2922484474", + "1.2768853551", + "1.2965193603", + "1.2857064463", + "1.2907729326", + "1.282276655", + "1.2753265499", + "1.2661968528", + "1.2668549732", + "1.2857688964", + "1.2588874525", + "1.240923242", + "1.3348111829", + "1.3361850566", + "1.3054966443", + "1.3630763349", + "1.3006549224", + "1.3061488652", + "1.3031878401", + "1.3278948252", + "1.3170723764", + "1.2252293044", + "1.1963192149", + "1.1575081549", + "1.1354068617", + "1.1267650554", + "1.1216448643", + "1.15851649", + "1.1610116159", + "1.132823547", + "1.1211855931", + "1.1247721021", + "1.1937252129", + "1.200433595", + "1.1700626484", + "1.2939807216", + "1.2884658262", + "1.2908068774", + "1.2485299512", + "1.2446759717", + "1.2825825454", + "1.2744057311", + "1.2431637086", + "1.2447230673", + "1.262743061", + "1.2194382663", + "1.2086021373", + "1.2097626898", + "1.2432490312", + "1.2314254785", + "1.2127986213", + "1.2317872436", + "1.2131192449", + "1.2269341871", + "1.2211516161", + "1.2200832341", + "1.2406416858", + "1.2364291384", + "1.219310093", + "1.253538467", + "1.2383042253", + "1.2434165343", + "1.2428098488", + "1.2072082184", + "1.2031880102", + "1.1877206586", + "1.2060671638", + "1.203000789", + "1.1773091952", + "1.1602964473", + "1.1549887964", + "1.159730581", + "1.1588719703", + "1.1916379302", + "1.1906572684", + "1.214697066", + "1.192588039", + "1.153080047", + "1.1562444578", + "1.1813063498", + "1.1775974657", + "1.153346849", + "1.1458894991", + "1.1482427584", + "1.1574202933", + "1.0831861964", + "1.1257892972", + "1.1100855265", + "1.1039237633", + "1.0976435185", + "1.0855409009", + "1.0887112403", + "1.1308833297", + "1.5652751609", + "1.65005336", + "1.5625887849", + "1.5477710728", + "1.52609844", + "1.0797760989", + "1.0985805049", + "1.14851337", + "1.110152618", + "1.125389821", + "1.2389269586", + "1.1926975657", + "1.2143492399", + "1.1730158938", + "1.0863542053", + "1.0987365482", + "1.1052276194", + "1.1656541562", + "1.1568546236", + "1.1549358926", + "1.1809381737", + "1.1782457381", + "1.1694776825", + "1.2009983061", + "1.2090817706", + "1.1932704974", + "1.1666522476", + "1.1613066745", + "1.1667173504", + "1.1554242092", + "1.1003933144", + "1.1054781363", + "1.1047229128", + "1.1515344973", + "1.1069642179", + "1.0894160195", + "1.1668408257", + "1.1201081859", + "1.0951907234", + "1.1082262146", + "1.078841701", + "1.0440553428", + "1.1281433786", + "1.130497165", + "1.1352743747", + "1.1406199727", + "1.1063189469", + "1.1669746962", + "1.1738108116", + "1.1703218091", + "1.1829868745", + "1.1690708317", + "1.1488549255", + "1.1402541568", + "1.186906025", + "1.2061842977", + "1.2568633176", + "1.0997857014", + "1.0689584073", + "1.1619641212", + "1.1609474213", + "1.1481683456", + "1.1050930585", + "1.1699163727", + "1.1608596205", + "1.1635118828", + "1.1946511881", + "1.1363100549", + "1.1215763521", + "1.1032012238", + "1.1315168625", + "1.1030239372", + "1.1581698545", + "1.1891632545", + "1.2117961023", + "1.1684799253", + "1.1398261368", + "1.1600730335", + "1.1398266451", + "1.1262126702", + "1.0909575993", + "1.1259071588", + "1.0569966829", + "1.0742620539", + "1.1570707649", + "1.1454361041", + "1.1425376778", + "1.152691985", + "1.1610548705", + "1.1503775093", + "1.1623180769", + "1.1507846194", + "1.1483231128", + "1.1167339812", + "1.122728887", + "1.1289868842", + "1.1161413388", + "1.1496799757", + "1.0819091874", + "1.1404071277", + "1.1375518951", + "1.1277924276", + "1.1270175512", + "1.153159676", + "1.1297684392", + "1.0994623012", + "1.0141342018", + "1.0259387466", + "1.0269560225", + "0.9709792453", + "0.9831061658", + "0.9798177638", + "0.9611435647", + "0.9698255164", + "0.9657847295", + "0.9558215797", + "0.9816226063", + "0.9783112696", + "0.9416819913", + "0.960220424", + "0.917979165", + "0.9206581038", + "0.9346485191", + "0.9361496288", + "0.9228197837", + "0.9122983896", + "0.9390528219", + "0.9249758748", + "0.8849695777", + "0.8923331133", + "1.0619006768", + "0.882234168", + "0.8867785223", + "0.8903822962", + "0.886329688", + "0.8534476613", + "0.8832563361", + "0.9033155783", + "0.905308302", + "0.9033907026", + "0.8867076136", + "0.885547684", + "0.8513112742", + "0.8535870757", + "0.9794704692", + "0.9906648253", + "0.876951601", + "0.8826090128", + "0.8726803212", + "0.8368121406", + "0.8624205375", + "0.853155423", + "0.8452906752", + "0.8444367448", + "0.8519613007", + "0.8459538269", + "0.8650227458", + "0.858946429", + "0.8706687798", + "0.865436004", + "0.8522197548", + "0.8402860531", + "0.849946779", + "0.8457932947", + "0.8516955973", + "0.8437472525", + "0.8191867168", + "0.8285996833", + "0.8224312679", + "0.8504624555", + "0.8481575079", + "0.3023122402", + "0.316143363", + "0.3288354737", + "0.237627762", + "0.2412516609", + "0.2300385177", + "0.2460889156", + "0.2266388278", + "0.2230621267", + "0.2399791856", + "0.2297801774", + "0.2343389492", + "0.2423919709", + "0.2281771344", + "0.2200019278", + "0.2800929073", + "0.256555134", + "0.25687216", + "0.1682073367", + "0.162714742", + "0.1528201179", + "0.1157003717", + "0.0", + "0.243417508", + "0.2622325274", + "0.2819982856", + "0.2581079759", + "0.2398113506", + "0.2683245267", + "0.2846297182", + "0.2919861184", + "0.2743842954", + "0.429041917", + "0.4352131741", + "0.4389308316", + "0.4741929232", + "0.4282045412", + "0.4538803489", + "0.3907913763", + "0.3736729382", + "0.6929987867", + "0.7039874753", + "0.6380587658", + "0.6393356422", + "0.5975187943", + "0.6139379653", + "0.6123216312", + "0.6360607606", + "0.6234852994", + "0.6012824797", + "0.7824734854", + "0.788772821", + "0.7687745156", + "0.7813029615", + "0.7798289638", + "0.748230754", + "0.7580298935", + "0.8069584435", + "0.8423826066", + "0.8171954273", + "0.7978836251", + "0.7467375499", + "0.7585361506", + "0.7582296004", + "0.7890454958", + "0.7894031916", + "0.7221206705", + "0.8598932769", + "0.8644769181", + "0.8742204941", + "0.8539820382", + "0.815677358", + "0.8850708548", + "0.8660345313", + "0.8708962195", + "0.8076843731", + "0.8393964865", + "0.8480325452", + "0.8596902994", + "0.8421257599", + "0.8287614443", + "0.7931284627", + "0.7922140903", + "0.7986807801", + "0.8745190628", + "0.8546355751", + "0.9300184735", + "0.8840289204", + "0.8383713437", + "0.8445763806", + "0.84951667", + "0.8442080113", + "0.8384064103", + "0.8658466793", + "0.8479902155", + "0.8399407219", + "0.8309277549", + "0.8528652319", + "0.8473633871", + "0.8489972791", + "0.812947188", + "0.8151036594", + "0.7882294465", + "0.871493137", + "0.8472313607", + "0.8325895471", + "0.8128582012", + "0.9485818919", + "0.9518417002", + "0.9797486815", + "0.9343845025", + "0.9384878185", + "0.952536298", + "0.9662527638", + "0.989891985", + "0.9310872933", + "0.9091011254", + "0.9377073579", + "0.9059580133", + "0.9092718386", + "0.9222390854", + "0.9025937205", + "0.9098560647", + "0.8954912118", + "0.8914027829", + "0.9731464156", + "0.9653378812", + "0.9196570717", + "0.9404240344", + "0.9371047637", + "0.9903141232", + "0.9177124775", + "0.9019237006", + "0.9195562275", + "0.9203793432", + "0.9218092054", + "0.9472301754", + "0.9591548248", + "1.017618845", + "1.0210052392", + "1.0040509167", + "0.9892830544", + "0.9700569215", + "0.9391910422", + "1.300473104", + "1.3249135805", + "1.288758302", + "1.2994089067", + "1.2766533722", + "1.2629017513", + "1.3532501368", + "1.3820943219", + "1.3832122441", + "1.3074813795", + "1.3050135042", + "1.3050802198", + "1.2988703256", + "1.3169575342", + "1.2929746784", + "1.2688268479", + "1.231623738", + "1.2397667356", + "1.217948157", + "1.2386798065", + "1.1969642362", + "1.2114517691", + "1.2131041953", + "1.2187200363", + "1.2112272209", + "1.2107618218", + "1.2080226739", + "1.1983250468", + "1.2160322691", + "1.1961786335", + "1.1986257844", + "1.19436595", + "1.209024397", + "1.2281244991", + "1.1714223804", + "1.1938231546", + "1.2018607854", + "1.2010028758", + "1.1842595304", + "1.1734816909", + "1.1736128486", + "1.1783054962", + "1.18162227", + "1.214342882", + "1.2455449705", + "1.2404729926", + "1.1644147221", + "1.1653060071", + "1.1605576954", + "1.1666069455", + "1.0876386275", + "0.9845953104", + "0.9982278234", + "1.2374549251", + "1.4453055509", + "1.198946114", + "1.2594613995", + "1.2608533485", + "1.2367167411", + "1.2443952443", + "1.2671156353", + "1.2569171674", + "1.2743262634", + "1.2754803248", + "1.2720429948", + "1.2717040364", + "1.2984885087", + "1.268445991", + "1.2720852695", + "1.275909851", + "1.2761293848", + "1.2394820204", + "1.2443583356", + "1.2654043757", + "1.2458565627", + "1.2531973098", + "1.2051087244", + "1.1975568187", + "1.2282693997", + "1.2244451527", + "1.2367942449", + "1.2416518807", + "1.2362965264", + "1.2358599562", + "1.226911085", + "1.2389275052", + "1.2165767639", + "1.2325252825", + "1.2412380216", + "1.2369527397", + "1.2451503061", + "1.2604065276", + "1.2558758751", + "1.1969701711", + "1.2347206813", + "1.2252220779", + "1.1873161492", + "1.4574914767", + "1.4901281345", + "1.4556046952", + "1.4642835487", + "1.4381740049", + "1.251964165", + "1.1052343931", + "1.0972669678", + "1.1506020789", + "1.1138741642", + "1.1189146553", + "1.1166840572", + "1.1043376365", + "1.1092802376", + "1.0625299531", + "1.1178254292", + "1.1121876779", + "1.1576731008", + "1.135768279", + "1.1281230428", + "1.1154531688", + "1.0283420335", + "1.0322596496", + "1.1404143748", + "1.1229703785", + "1.126917691", + "1.12173004", + "1.0943139072", + "1.1833892722", + "1.1309588383", + "1.1310052132", + "1.2280540831", + "1.2586010459", + "1.2140128596", + "1.221005231", + "1.1937688862", + "1.1991566844", + "1.1983238065", + "1.1904904909", + "1.133111109", + "1.2817248613", + "1.3358898288", + "1.3029127521", + "1.2921111512", + "1.2994170658", + "1.2400122272", + "1.2526130581", + "1.2596706711", + "1.2549086388", + "1.3042716803", + "1.3102585525", + "1.3196574016", + "1.3317487818", + "1.2669248218", + "1.3087135429", + "1.3068451266", + "1.2332595644", + "1.2313872934", + "1.2595830671", + "1.2526864362", + "1.3045051875", + "1.2081810763", + "1.1535104179", + "1.1713241488", + "1.134068753", + "1.1664684805", + "1.2496992413", + "1.2629415975", + "1.2778578249", + "1.2930942321", + "1.2068628276", + "1.1392518767", + "1.1996345946", + "1.2723388889", + "1.1181733837", + "1.1470319858", + "1.1531542344", + "1.2099436063", + "1.1632737244", + "1.1697873702", + "1.1745697162", + "1.1558183555", + "1.1820649024", + "1.2493426044", + "1.2558967686", + "1.2836822836", + "1.2966852738", + "1.2933055738", + "1.1719424934", + "1.1989868005", + "1.162275845", + "1.1676930635", + "1.2196776754", + "1.2519908967", + "1.2439262751", + "1.2523417385", + "1.2394363958", + "1.2265433098", + "1.2310897978", + "1.2847150897", + "1.3401009111", + "1.4368582323", + "1.3499826502", + "1.3493523453", + "1.377178097", + "1.3145657373", + "1.3814118566", + "1.3764579301", + "1.3414328294", + "1.3506962951", + "1.245982414", + "1.5375394793", + "1.4636941706", + "1.472883191", + "1.4003928187", + "1.4126836603", + "1.4022985608", + "1.5045021699", + "1.4317338077", + "1.4699214226", + "1.4640042968", + "1.4418887788", + "1.3711159923", + "1.3738608358", + "1.4185193859", + "1.4122801443", + "1.4168689449", + "1.3822673571", + "1.3738483326", + "1.3658114912", + "1.4254606127", + "1.3842892568", + "1.3919579592", + "1.362478788", + "1.3152257077", + "1.41878836", + "1.3568724711", + "1.3500058264", + "1.3702340583", + "1.4463783159", + "1.4586498745", + "1.4672387377", + "1.4623509691", + "1.4561462427", + "1.4459864479", + "1.4450045591", + "1.4383514772", + "1.5565463547", + "1.5374296298", + "1.4113647497", + "1.4606500927", + "1.4605774108", + "1.4542181824", + "1.4567309529", + "1.522813453", + "1.5173634306", + "1.4722418912", + "1.4582065476", + "1.4555536455", + "1.4440575615", + "1.4627909552", + "1.431267331", + "1.4222231807", + "1.4180616208", + "1.4336223147", + "1.4290926256", + "1.4199906779", + "1.4265605923", + "1.4412359061", + "1.4559864786", + "1.4649208454", + "1.4913855331", + "1.4429161406", + "1.4669279083", + "1.4778529319", + "1.4215412865", + "1.4758610256", + "1.4507931733", + "1.4267305842", + "1.4262318134", + "1.4339251305", + "1.4278900208", + "1.4010220977", + "1.4089671558", + "1.4121093652", + "1.3833896497" + ] + }, + "essential_compounds": [ + "15dap", + "34dhpha", + "4abut", + "4hbz", + "4hoxpacd", + "ac", + "acac", + "acald", + "acgam", + "adn", + "adocbl", + "akg", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arg_L", + "asn_L", + "asp_L", + "btn", + "but", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cynt", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "ddca", + "dgsn", + "din", + "dms", + "dmso", + "drib", + "duri", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "fum", + "gal", + "galctn_D", + "galur", + "gbbtn", + "gcald", + "glc_D", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hg2", + "his_L", + "hxan", + "ile_L", + "ins", + "k", + "lac_D", + "lac_L", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man", + "melib", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "oxa", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppi", + "pppn", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "rib_D", + "rmn", + "salcn", + "sel", + "selni", + "ser_D", + "ser_L", + "so4", + "spmd", + "succ", + "sucr", + "taur", + "thm", + "thr_L", + "thymd", + "tma", + "tmao", + "tre", + "trp_L", + "tsul", + "ttdca", + "tym", + "tyr_L", + "ura", + "urea", + "uri", + "val_L", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_415.json b/agents/agora/agent_415.json new file mode 100644 index 0000000000000000000000000000000000000000..ff40a4ac29ffb19942b1288a4d52eaae56ac2c74 --- /dev/null +++ b/agents/agora/agent_415.json @@ -0,0 +1,983 @@ +{ + "id": 415, + "name": "Fusobacterium_nucleatum_subsp_animalis_3_1_33", + "N_R": 1013, + "taxonomy": { + "k": 415, + "tax_distance": [ + "2.4805231398", + "2.0626452725", + "2.0559460434", + "2.2825287505", + "1.9639286766", + "2.0090573635", + "1.9903520657", + "1.9874094714", + "2.0513910697", + "1.9697469778", + "1.9868116812", + "2.094933995", + "2.0679517733", + "2.2959657312", + "2.3443225483", + "2.3746550589", + "2.255004661", + "2.2639287778", + "2.2994032534", + "1.8323875694", + "1.7677165927", + "1.517195334", + "1.4505449016", + "1.3290652249", + "1.1548859461", + "1.149074738", + "1.1457201666", + "1.148081221", + "1.132314931", + "1.1236291681", + "1.1260800742", + "1.2276660103", + "1.2372038131", + "1.2335699031", + "1.2492659717", + "1.2177643917", + "1.2405103358", + "1.2588162473", + "1.2397842843", + "1.5327249433", + "1.2775665646", + "1.1962055086", + "1.2029708148", + "1.2055783949", + "1.2023466529", + "1.2053200346", + "1.2004214297", + "1.200806465", + "1.1949915542", + "1.1870303646", + "1.1286081866", + "1.1341205866", + "1.1283797533", + "1.1005334827", + "1.1070552268", + "1.136157224", + "1.1100803372", + "1.1080643096", + "1.1288187152", + "1.1264788205", + "1.109736993", + "1.1350877646", + "1.1371625544", + "1.1358316612", + "1.1502228787", + "1.1519450406", + "1.1519450406", + "1.1585906233", + "1.1585906233", + "1.1585906233", + "1.1585906233", + "1.1585906233", + "1.1585906233", + "1.1585906233", + "1.1585906233", + "1.1545112606", + "1.1548569978", + "1.1484252902", + "1.1589177648", + "1.1580125229", + "1.1541143533", + "1.1523716797", + "1.1536902495", + "1.150188369", + "1.1451106207", + "1.1484557463", + "1.1539015131", + "1.1493633214", + "1.1343633653", + "1.1427344802", + "1.137459095", + "1.153607036", + "1.1489097468", + "1.1530433161", + "1.1310036055", + "1.1256034217", + "1.1396697768", + "1.1503301858", + "1.1671272288", + "1.1495369386", + "1.1395418201", + "1.1382240025", + "1.1189736226", + "1.1318521116", + "1.1907245566", + "1.1855726449", + "1.2524689022", + "1.2186296462", + "1.1558210054", + "1.1595472622", + "1.1622807293", + "1.1551766478", + "1.1551766478", + "1.1365527456", + "1.1394568919", + "1.1313563752", + "1.1668820739", + "1.1036595244", + "1.081568611", + "1.0994329673", + "1.086161972", + "1.0865875644", + "1.204839278", + "1.2120297288", + "1.2334707417", + "1.038067026", + "1.2078159793", + "1.2144912134", + "1.1991281211", + "1.2187621263", + "1.2079492123", + "1.2130156986", + "1.204519421", + "1.1975693159", + "1.1884396188", + "1.1890977392", + "1.2080116624", + "1.1811302185", + "1.163166008", + "1.2570539489", + "1.2584278226", + "1.2277394103", + "1.2853191009", + "1.2228976884", + "1.2283916312", + "1.2254306061", + "1.2501375912", + "1.2393151424", + "1.1474720704", + "1.1185619809", + "1.0797509209", + "1.0576496277", + "1.0490078214", + "1.0438876303", + "1.080759256", + "1.0832543819", + "1.055066313", + "1.0434283591", + "1.0470148681", + "1.1159679789", + "1.122676361", + "1.0923054144", + "1.2162234876", + "1.2107085922", + "1.2130496434", + "1.1707727172", + "1.1669187377", + "1.2048253114", + "1.1966484971", + "1.1654064746", + "1.1669658333", + "1.184985827", + "1.1416810323", + "1.1308449033", + "1.1320054558", + "1.1654917972", + "1.1536682445", + "1.1350413873", + "1.1540300096", + "1.1353620109", + "1.1491769531", + "1.1433943821", + "1.1423260001", + "1.1628844518", + "1.1586719044", + "1.141552859", + "1.175781233", + "1.1605469913", + "1.1656593003", + "1.1650526148", + "1.1294509844", + "1.1254307762", + "1.1099634246", + "1.1283099298", + "1.125243555", + "1.0995519612", + "1.0825392133", + "1.0772315624", + "1.081973347", + "1.0811147363", + "1.1138806962", + "1.1129000344", + "1.136939832", + "1.114830805", + "1.075322813", + "1.0784872238", + "1.1035491158", + "1.0998402317", + "1.075589615", + "1.0681322651", + "1.0704855244", + "1.0796630593", + "1.0054289624", + "1.0480320632", + "1.0323282925", + "1.0261665293", + "1.0198862845", + "1.0077836669", + "1.0109540063", + "1.0531260957", + "1.4875179269", + "1.572296126", + "1.4848315509", + "1.4700138388", + "1.448341206", + "1.0020188649", + "1.0208232709", + "1.070756136", + "1.032395384", + "1.047632587", + "1.1611697246", + "1.1149403317", + "1.1365920059", + "1.0952586598", + "1.0085969713", + "1.0209793142", + "1.0274703854", + "1.0878969222", + "1.0790973896", + "1.0771786586", + "1.1031809397", + "1.1004885041", + "1.0917204485", + "1.1232410721", + "1.1313245366", + "1.1155132634", + "1.0888950136", + "1.0835494405", + "1.0889601164", + "1.0776669752", + "1.0226360804", + "1.0277209023", + "1.0269656788", + "1.0737772633", + "1.0292069839", + "1.0116587855", + "1.0890835917", + "1.0423509519", + "1.0174334894", + "1.0304689806", + "1.001084467", + "0.9662981088", + "1.0503861446", + "1.052739931", + "1.0575171407", + "1.0628627387", + "1.0285617129", + "1.0892174622", + "1.0960535776", + "1.0925645751", + "1.1052296405", + "1.0913135977", + "1.0710976915", + "1.0624969228", + "1.109148791", + "1.1284270637", + "1.1791060836", + "1.0220284674", + "0.9912011733", + "1.0842068872", + "1.0831901873", + "1.0704111116", + "1.0273358245", + "1.0921591387", + "1.0831023865", + "1.0857546488", + "1.1168939541", + "1.0585528209", + "1.0438191181", + "1.0254439898", + "1.0537596285", + "1.0252667032", + "1.0804126205", + "1.1114060205", + "1.1340388683", + "1.0907226913", + "1.0620689028", + "1.0823157995", + "1.0620694111", + "1.0484554362", + "1.0132003653", + "1.0481499248", + "0.9792394489", + "0.9965048199", + "1.0793135309", + "1.0676788701", + "1.0647804438", + "1.074934751", + "1.0832976365", + "1.0726202753", + "1.0845608429", + "1.0730273854", + "1.0705658788", + "1.0389767472", + "1.044971653", + "1.0512296502", + "1.0383841048", + "1.0719227417", + "1.0041519534", + "1.0626498937", + "1.0597946611", + "1.0500351936", + "1.0492603172", + "1.075402442", + "1.0520112052", + "1.0217050672", + "0.9363769678", + "0.9481815126", + "0.9491987885", + "0.8932220113", + "0.9053489318", + "0.9020605298", + "0.8833863307", + "0.8920682824", + "0.8880274955", + "0.8780643457", + "0.9038653723", + "0.9005540356", + "0.8639247573", + "0.88246319", + "0.840221931", + "0.8429008698", + "0.8568912851", + "0.8583923948", + "0.8450625497", + "0.8345411556", + "0.8612955879", + "0.8472186408", + "0.8072123437", + "0.8145758793", + "0.9841434428", + "0.804476934", + "0.8090212883", + "0.8126250622", + "0.808572454", + "0.7756904273", + "0.8054991021", + "0.8255583443", + "0.827551068", + "0.8256334686", + "0.8089503796", + "0.80779045", + "0.7735540402", + "0.7758298417", + "0.9017132352", + "0.9129075913", + "0.799194367", + "0.8048517788", + "0.7949230872", + "0.7590549066", + "0.7846633035", + "0.775398189", + "0.7675334412", + "0.7666795108", + "0.7742040667", + "0.7681965929", + "0.7872655118", + "0.781189195", + "0.7929115458", + "0.78767877", + "0.7744625208", + "0.7625288191", + "0.772189545", + "0.7680360607", + "0.7739383633", + "0.7659900185", + "0.7414294828", + "0.7508424493", + "0.7446740339", + "0.7727052215", + "0.7704002739", + "0.2245550062", + "0.238386129", + "0.2510782397", + "0.2078309714", + "0.2114548703", + "0.2002417271", + "0.216292125", + "0.1968420372", + "0.1932653361", + "0.210182395", + "0.1999833868", + "0.2045421586", + "0.2125951803", + "0.1983803438", + "0.1902051372", + "0.2502961167", + "0.2267583434", + "0.2270753694", + "0.2277187833", + "0.2222261886", + "0.2123315645", + "0.2725086409", + "0.243417508", + "0.0", + "0.103825595", + "0.1618601792", + "0.1571724993", + "0.138875874", + "0.1905672927", + "0.2068724842", + "0.2142288844", + "0.1966270614", + "0.351284683", + "0.3574559401", + "0.3611735976", + "0.3964356892", + "0.3504473072", + "0.3761231149", + "0.3130341423", + "0.2959157042", + "0.6152415527", + "0.6262302413", + "0.5603015318", + "0.5615784082", + "0.5197615603", + "0.5361807313", + "0.5345643972", + "0.5583035266", + "0.5457280654", + "0.5235252457", + "0.7047162514", + "0.711015587", + "0.6910172816", + "0.7035457275", + "0.7020717298", + "0.67047352", + "0.6802726595", + "0.7292012095", + "0.7646253726", + "0.7394381933", + "0.7201263911", + "0.6689803159", + "0.6807789166", + "0.6804723664", + "0.7112882618", + "0.7116459576", + "0.6443634365", + "0.7821360429", + "0.7867196841", + "0.7964632601", + "0.7762248042", + "0.737920124", + "0.8073136208", + "0.7882772973", + "0.7931389855", + "0.7299271391", + "0.7616392525", + "0.7702753112", + "0.7819330654", + "0.7643685259", + "0.7510042103", + "0.7153712287", + "0.7144568563", + "0.7209235461", + "0.7967618288", + "0.7768783411", + "0.8522612395", + "0.8062716864", + "0.7606141097", + "0.7668191466", + "0.771759436", + "0.7664507773", + "0.7606491763", + "0.7880894453", + "0.7702329815", + "0.7621834879", + "0.7531705209", + "0.7751079979", + "0.7696061531", + "0.7712400451", + "0.735189954", + "0.7373464254", + "0.7104722125", + "0.793735903", + "0.7694741267", + "0.7548323131", + "0.7351009672", + "0.8708246579", + "0.8740844662", + "0.9019914475", + "0.8566272685", + "0.8607305845", + "0.874779064", + "0.8884955298", + "0.912134751", + "0.8533300593", + "0.8313438914", + "0.8599501239", + "0.8282007793", + "0.8315146046", + "0.8444818514", + "0.8248364865", + "0.8320988307", + "0.8177339778", + "0.8136455489", + "0.8953891816", + "0.8875806472", + "0.8418998377", + "0.8626668004", + "0.8593475297", + "0.9125568892", + "0.8399552435", + "0.8241664666", + "0.8417989935", + "0.8426221092", + "0.8440519714", + "0.8694729414", + "0.8813975908", + "0.939861611", + "0.9432480052", + "0.9262936827", + "0.9115258204", + "0.8922996875", + "0.8614338082", + "1.22271587", + "1.2471563465", + "1.211001068", + "1.2216516727", + "1.1988961382", + "1.1851445173", + "1.2754929028", + "1.3043370879", + "1.3054550101", + "1.2297241455", + "1.2272562702", + "1.2273229858", + "1.2211130916", + "1.2392003002", + "1.2152174444", + "1.1910696139", + "1.153866504", + "1.1620095016", + "1.140190923", + "1.1609225725", + "1.1192070022", + "1.1336945351", + "1.1353469613", + "1.1409628023", + "1.1334699869", + "1.1330045878", + "1.1302654399", + "1.1205678128", + "1.1382750351", + "1.1184213995", + "1.1208685504", + "1.116608716", + "1.131267163", + "1.1503672651", + "1.0936651464", + "1.1160659206", + "1.1241035514", + "1.1232456418", + "1.1065022964", + "1.0957244569", + "1.0958556146", + "1.1005482622", + "1.103865036", + "1.136585648", + "1.1677877365", + "1.1627157586", + "1.0866574881", + "1.0875487731", + "1.0828004614", + "1.0888497115", + "1.0098813935", + "0.9068380764", + "0.9204705894", + "1.1596976911", + "1.3675483169", + "1.12118888", + "1.1817041655", + "1.1830961145", + "1.1589595071", + "1.1666380103", + "1.1893584013", + "1.1791599334", + "1.1965690294", + "1.1977230908", + "1.1942857608", + "1.1939468024", + "1.2207312747", + "1.190688757", + "1.1943280355", + "1.198152617", + "1.1983721508", + "1.1617247864", + "1.1666011016", + "1.1876471417", + "1.1680993287", + "1.1754400758", + "1.1273514904", + "1.1197995847", + "1.1505121657", + "1.1466879187", + "1.1590370109", + "1.1638946467", + "1.1585392924", + "1.1581027222", + "1.149153851", + "1.1611702712", + "1.1388195299", + "1.1547680485", + "1.1634807876", + "1.1591955057", + "1.1673930721", + "1.1826492936", + "1.1781186411", + "1.1192129371", + "1.1569634473", + "1.1474648439", + "1.1095589152", + "1.3797342427", + "1.4123709005", + "1.3778474612", + "1.3865263147", + "1.3604167709", + "1.174206931", + "1.0274771591", + "1.0195097338", + "1.0728448449", + "1.0361169302", + "1.0411574213", + "1.0389268232", + "1.0265804025", + "1.0315230036", + "0.9847727191", + "1.0400681952", + "1.0344304439", + "1.0799158668", + "1.058011045", + "1.0503658088", + "1.0376959348", + "0.9505847995", + "0.9545024156", + "1.0626571408", + "1.0452131445", + "1.049160457", + "1.043972806", + "1.0165566732", + "1.1056320382", + "1.0532016043", + "1.0532479792", + "1.1502968491", + "1.1808438119", + "1.1362556256", + "1.143247997", + "1.1160116522", + "1.1213994504", + "1.1205665725", + "1.1127332569", + "1.055353875", + "1.2039676273", + "1.2581325948", + "1.2251555181", + "1.2143539172", + "1.2216598318", + "1.1622549932", + "1.1748558241", + "1.1819134371", + "1.1771514048", + "1.2265144463", + "1.2325013185", + "1.2419001676", + "1.2539915478", + "1.1891675878", + "1.2309563089", + "1.2290878926", + "1.1555023304", + "1.1536300594", + "1.1818258331", + "1.1749292022", + "1.2267479535", + "1.1304238423", + "1.0757531839", + "1.0935669148", + "1.056311519", + "1.0887112465", + "1.1719420073", + "1.1851843635", + "1.2001005909", + "1.2153369981", + "1.1291055936", + "1.0614946427", + "1.1218773606", + "1.1945816549", + "1.0404161497", + "1.0692747518", + "1.0753970004", + "1.1321863723", + "1.0855164904", + "1.0920301362", + "1.0968124822", + "1.0780611215", + "1.1043076684", + "1.1715853704", + "1.1781395346", + "1.2059250496", + "1.2189280398", + "1.2155483398", + "1.0941852594", + "1.1212295665", + "1.084518611", + "1.0899358295", + "1.1419204414", + "1.1742336627", + "1.1661690411", + "1.1745845045", + "1.1616791618", + "1.1487860758", + "1.1533325638", + "1.2069578557", + "1.2623436771", + "1.3591009983", + "1.2722254162", + "1.2715951113", + "1.299420863", + "1.2368085033", + "1.3036546226", + "1.2987006961", + "1.2636755954", + "1.2729390611", + "1.16822518", + "1.4597822453", + "1.3859369366", + "1.395125957", + "1.3226355847", + "1.3349264263", + "1.3245413268", + "1.4267449359", + "1.3539765737", + "1.3921641886", + "1.3862470628", + "1.3641315448", + "1.2933587583", + "1.2961036018", + "1.3407621519", + "1.3345229103", + "1.3391117109", + "1.3045101231", + "1.2960910986", + "1.2880542572", + "1.3477033787", + "1.3065320228", + "1.3142007252", + "1.284721554", + "1.2374684737", + "1.341031126", + "1.2791152371", + "1.2722485924", + "1.2924768243", + "1.3686210819", + "1.3808926405", + "1.3894815037", + "1.3845937351", + "1.3783890087", + "1.3682292139", + "1.3672473251", + "1.3605942432", + "1.4787891207", + "1.4596723958", + "1.3336075157", + "1.3828928587", + "1.3828201768", + "1.3764609484", + "1.3789737189", + "1.445056219", + "1.4396061966", + "1.3944846572", + "1.3804493136", + "1.3777964115", + "1.3663003275", + "1.3850337212", + "1.353510097", + "1.3444659467", + "1.3403043868", + "1.3558650807", + "1.3513353916", + "1.3422334439", + "1.3488033583", + "1.3634786721", + "1.3782292446", + "1.3871636114", + "1.4136282991", + "1.3651589066", + "1.3891706743", + "1.4000956979", + "1.3437840525", + "1.3981037916", + "1.3730359393", + "1.3489733502", + "1.3484745794", + "1.3561678965", + "1.3501327868", + "1.3232648637", + "1.3312099218", + "1.3343521312", + "1.3056324157" + ] + }, + "essential_compounds": [ + "12dgr180", + "13ppd", + "26dap_M", + "2obut", + "4hbz", + "ac", + "acald", + "acgam", + "actn_R", + "ade", + "adn", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_L", + "arabttr", + "arbt", + "arg_L", + "arsenb", + "asn_L", + "asp_L", + "btn", + "ca2", + "cd2", + "cellb", + "cgly", + "chol", + "chols", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dgsn", + "drib", + "etoh", + "fe2", + "fe3", + "fecrm", + "fol", + "for", + "fru", + "gal", + "galt", + "gam", + "gbbtn", + "gcald", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gua", + "h2o", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "k", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man", + "mantr", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mqn8", + "n2o", + "na1", + "nac", + "nh4", + "no2", + "no", + "o2", + "ocdca", + "ocdcea", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "pnto_R", + "ppa", + "ppi", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "q8", + "rib_D", + "ribflv", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "sheme", + "so4", + "spmd", + "strch1", + "strch2", + "succ", + "sucr", + "thm", + "thr_L", + "thymd", + "tma", + "tre", + "trp_L", + "tyr_L", + "ura", + "uri", + "val_L", + "xan", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_416.json b/agents/agora/agent_416.json new file mode 100644 index 0000000000000000000000000000000000000000..7c54032179577ebf6179c395f5b6ca7266b53322 --- /dev/null +++ b/agents/agora/agent_416.json @@ -0,0 +1,989 @@ +{ + "id": 416, + "name": "Fusobacterium_nucleatum_subsp_animalis_7_1", + "N_R": 1085, + "taxonomy": { + "k": 416, + "tax_distance": [ + "2.4993381592", + "2.0814602919", + "2.0747610628", + "2.3013437699", + "1.982743696", + "2.0278723829", + "2.0091670851", + "2.0062244908", + "2.0702060891", + "1.9885619972", + "2.0056267006", + "2.1137490144", + "2.0867667927", + "2.3147807506", + "2.3631375677", + "2.3934700783", + "2.2738196804", + "2.2827437972", + "2.3182182728", + "1.8512025888", + "1.7865316121", + "1.5360103534", + "1.469359921", + "1.3478802443", + "1.1737009655", + "1.1678897574", + "1.164535186", + "1.1668962404", + "1.1511299504", + "1.1424441875", + "1.1448950936", + "1.2464810297", + "1.2560188325", + "1.2523849225", + "1.2680809911", + "1.2365794111", + "1.2593253552", + "1.2776312667", + "1.2585993037", + "1.5515399627", + "1.296381584", + "1.215020528", + "1.2217858342", + "1.2243934143", + "1.2211616723", + "1.224135054", + "1.2192364491", + "1.2196214844", + "1.2138065736", + "1.205845384", + "1.147423206", + "1.152935606", + "1.1471947727", + "1.1193485021", + "1.1258702462", + "1.1549722434", + "1.1288953566", + "1.126879329", + "1.1476337346", + "1.1452938399", + "1.1285520124", + "1.153902784", + "1.1559775738", + "1.1546466806", + "1.1690378981", + "1.17076006", + "1.17076006", + "1.1774056427", + "1.1774056427", + "1.1774056427", + "1.1774056427", + "1.1774056427", + "1.1774056427", + "1.1774056427", + "1.1774056427", + "1.17332628", + "1.1736720172", + "1.1672403096", + "1.1777327842", + "1.1768275423", + "1.1729293727", + "1.1711866991", + "1.1725052689", + "1.1690033884", + "1.1639256401", + "1.1672707657", + "1.1727165325", + "1.1681783408", + "1.1531783847", + "1.1615494996", + "1.1562741144", + "1.1724220554", + "1.1677247662", + "1.1718583355", + "1.1498186249", + "1.1444184411", + "1.1584847962", + "1.1691452052", + "1.1859422482", + "1.168351958", + "1.1583568395", + "1.1570390219", + "1.137788642", + "1.150667131", + "1.209539576", + "1.2043876643", + "1.2712839216", + "1.2374446656", + "1.1746360248", + "1.1783622816", + "1.1810957487", + "1.1739916672", + "1.1739916672", + "1.155367765", + "1.1582719113", + "1.1501713946", + "1.1856970933", + "1.1224745438", + "1.1003836304", + "1.1182479867", + "1.1049769914", + "1.1054025838", + "1.2236542974", + "1.2308447482", + "1.2522857611", + "1.0568820454", + "1.2266309987", + "1.2333062328", + "1.2179431405", + "1.2375771457", + "1.2267642317", + "1.231830718", + "1.2233344404", + "1.2163843353", + "1.2072546382", + "1.2079127586", + "1.2268266818", + "1.1999452379", + "1.1819810274", + "1.2758689683", + "1.277242842", + "1.2465544297", + "1.3041341203", + "1.2417127078", + "1.2472066506", + "1.2442456255", + "1.2689526106", + "1.2581301618", + "1.1662870898", + "1.1373770003", + "1.0985659403", + "1.0764646471", + "1.0678228408", + "1.0627026497", + "1.0995742754", + "1.1020694013", + "1.0738813324", + "1.0622433785", + "1.0658298875", + "1.1347829983", + "1.1414913804", + "1.1111204338", + "1.235038507", + "1.2295236116", + "1.2318646628", + "1.1895877366", + "1.1857337571", + "1.2236403308", + "1.2154635165", + "1.184221494", + "1.1857808527", + "1.2038008464", + "1.1604960517", + "1.1496599227", + "1.1508204752", + "1.1843068166", + "1.1724832639", + "1.1538564067", + "1.172845029", + "1.1541770303", + "1.1679919725", + "1.1622094015", + "1.1611410195", + "1.1816994712", + "1.1774869238", + "1.1603678784", + "1.1945962524", + "1.1793620107", + "1.1844743197", + "1.1838676342", + "1.1482660038", + "1.1442457956", + "1.128778444", + "1.1471249492", + "1.1440585744", + "1.1183669806", + "1.1013542327", + "1.0960465818", + "1.1007883664", + "1.0999297557", + "1.1326957156", + "1.1317150538", + "1.1557548514", + "1.1336458244", + "1.0941378324", + "1.0973022432", + "1.1223641352", + "1.1186552511", + "1.0944046344", + "1.0869472845", + "1.0893005438", + "1.0984780787", + "1.0242439818", + "1.0668470826", + "1.0511433119", + "1.0449815487", + "1.0387013039", + "1.0265986863", + "1.0297690257", + "1.0719411151", + "1.5063329463", + "1.5911111454", + "1.5036465703", + "1.4888288582", + "1.4671562254", + "1.0208338843", + "1.0396382903", + "1.0895711554", + "1.0512104034", + "1.0664476064", + "1.179984744", + "1.1337553511", + "1.1554070253", + "1.1140736792", + "1.0274119907", + "1.0397943336", + "1.0462854048", + "1.1067119416", + "1.097912409", + "1.095993678", + "1.1219959591", + "1.1193035235", + "1.1105354679", + "1.1420560915", + "1.150139556", + "1.1343282828", + "1.107710033", + "1.1023644599", + "1.1077751358", + "1.0964819946", + "1.0414510998", + "1.0465359217", + "1.0457806982", + "1.0925922827", + "1.0480220033", + "1.0304738049", + "1.1078986111", + "1.0611659713", + "1.0362485088", + "1.049284", + "1.0198994864", + "0.9851131282", + "1.069201164", + "1.0715549504", + "1.0763321601", + "1.0816777581", + "1.0473767323", + "1.1080324816", + "1.114868597", + "1.1113795945", + "1.1240446599", + "1.1101286171", + "1.0899127109", + "1.0813119422", + "1.1279638104", + "1.1472420831", + "1.197921103", + "1.0408434868", + "1.0100161927", + "1.1030219066", + "1.1020052067", + "1.089226131", + "1.0461508439", + "1.1109741581", + "1.1019174059", + "1.1045696682", + "1.1357089735", + "1.0773678403", + "1.0626341375", + "1.0442590092", + "1.0725746479", + "1.0440817226", + "1.0992276399", + "1.1302210399", + "1.1528538877", + "1.1095377107", + "1.0808839222", + "1.1011308189", + "1.0808844305", + "1.0672704556", + "1.0320153847", + "1.0669649442", + "0.9980544683", + "1.0153198393", + "1.0981285503", + "1.0864938895", + "1.0835954632", + "1.0937497704", + "1.1021126559", + "1.0914352947", + "1.1033758623", + "1.0918424048", + "1.0893808982", + "1.0577917666", + "1.0637866724", + "1.0700446696", + "1.0571991242", + "1.0907377611", + "1.0229669728", + "1.0814649131", + "1.0786096805", + "1.068850213", + "1.0680753366", + "1.0942174614", + "1.0708262246", + "1.0405200866", + "0.9551919872", + "0.966996532", + "0.9680138079", + "0.9120370307", + "0.9241639512", + "0.9208755492", + "0.9022013501", + "0.9108833018", + "0.9068425149", + "0.8968793651", + "0.9226803917", + "0.919369055", + "0.8827397767", + "0.9012782094", + "0.8590369504", + "0.8617158892", + "0.8757063045", + "0.8772074142", + "0.8638775691", + "0.853356175", + "0.8801106073", + "0.8660336602", + "0.8260273631", + "0.8333908987", + "1.0029584622", + "0.8232919534", + "0.8278363077", + "0.8314400816", + "0.8273874734", + "0.7945054467", + "0.8243141215", + "0.8443733637", + "0.8463660874", + "0.844448488", + "0.827765399", + "0.8266054694", + "0.7923690596", + "0.7946448611", + "0.9205282546", + "0.9317226107", + "0.8180093864", + "0.8236667982", + "0.8137381066", + "0.777869926", + "0.8034783229", + "0.7942132084", + "0.7863484606", + "0.7854945302", + "0.7930190861", + "0.7870116123", + "0.8060805312", + "0.8000042144", + "0.8117265652", + "0.8064937894", + "0.7932775402", + "0.7813438385", + "0.7910045644", + "0.7868510801", + "0.7927533827", + "0.7848050379", + "0.7602445022", + "0.7696574687", + "0.7634890533", + "0.7915202409", + "0.7892152933", + "0.2433700256", + "0.2572011484", + "0.2698932591", + "0.2266459908", + "0.2302698897", + "0.2190567465", + "0.2351071444", + "0.2156570566", + "0.2120803555", + "0.2289974144", + "0.2187984062", + "0.223357178", + "0.2314101997", + "0.2171953632", + "0.2090201566", + "0.2691111361", + "0.2455733628", + "0.2458903888", + "0.2465338027", + "0.241041208", + "0.2311465839", + "0.2913236603", + "0.2622325274", + "0.103825595", + "0.0", + "0.1806751986", + "0.1759875187", + "0.1576908934", + "0.2093823121", + "0.2256875036", + "0.2330439038", + "0.2154420808", + "0.3700997024", + "0.3762709595", + "0.379988617", + "0.4152507086", + "0.3692623266", + "0.3949381343", + "0.3318491617", + "0.3147307236", + "0.6340565721", + "0.6450452607", + "0.5791165512", + "0.5803934276", + "0.5385765797", + "0.5549957507", + "0.5533794166", + "0.577118546", + "0.5645430848", + "0.5423402651", + "0.7235312708", + "0.7298306064", + "0.709832301", + "0.7223607469", + "0.7208867492", + "0.6892885394", + "0.6990876789", + "0.7480162289", + "0.783440392", + "0.7582532127", + "0.7389414105", + "0.6877953353", + "0.699593936", + "0.6992873858", + "0.7301032812", + "0.730460977", + "0.6631784559", + "0.8009510623", + "0.8055347035", + "0.8152782795", + "0.7950398236", + "0.7567351434", + "0.8261286402", + "0.8070923167", + "0.8119540049", + "0.7487421585", + "0.7804542719", + "0.7890903306", + "0.8007480848", + "0.7831835453", + "0.7698192297", + "0.7341862481", + "0.7332718757", + "0.7397385655", + "0.8155768482", + "0.7956933605", + "0.8710762589", + "0.8250867058", + "0.7794291291", + "0.785634166", + "0.7905744554", + "0.7852657967", + "0.7794641957", + "0.8069044647", + "0.7890480009", + "0.7809985073", + "0.7719855403", + "0.7939230173", + "0.7884211725", + "0.7900550645", + "0.7540049734", + "0.7561614448", + "0.7292872319", + "0.8125509224", + "0.7882891461", + "0.7736473325", + "0.7539159866", + "0.8896396773", + "0.8928994856", + "0.9208064669", + "0.8754422879", + "0.8795456039", + "0.8935940834", + "0.9073105492", + "0.9309497704", + "0.8721450787", + "0.8501589108", + "0.8787651433", + "0.8470157987", + "0.850329624", + "0.8632968708", + "0.8436515059", + "0.8509138501", + "0.8365489972", + "0.8324605683", + "0.914204201", + "0.9063956666", + "0.8607148571", + "0.8814818198", + "0.8781625491", + "0.9313719086", + "0.8587702629", + "0.842981486", + "0.8606140129", + "0.8614371286", + "0.8628669908", + "0.8882879608", + "0.9002126102", + "0.9586766304", + "0.9620630246", + "0.9451087021", + "0.9303408398", + "0.9111147069", + "0.8802488276", + "1.2415308894", + "1.2659713659", + "1.2298160874", + "1.2404666921", + "1.2177111576", + "1.2039595367", + "1.2943079222", + "1.3231521073", + "1.3242700295", + "1.2485391649", + "1.2460712896", + "1.2461380052", + "1.239928111", + "1.2580153196", + "1.2340324638", + "1.2098846333", + "1.1726815234", + "1.180824521", + "1.1590059424", + "1.1797375919", + "1.1380220216", + "1.1525095545", + "1.1541619807", + "1.1597778217", + "1.1522850063", + "1.1518196072", + "1.1490804593", + "1.1393828322", + "1.1570900545", + "1.1372364189", + "1.1396835698", + "1.1354237354", + "1.1500821824", + "1.1691822845", + "1.1124801658", + "1.13488094", + "1.1429185708", + "1.1420606612", + "1.1253173158", + "1.1145394763", + "1.114670634", + "1.1193632816", + "1.1226800554", + "1.1554006674", + "1.1866027559", + "1.181530778", + "1.1054725075", + "1.1063637925", + "1.1016154808", + "1.1076647309", + "1.0286964129", + "0.9256530958", + "0.9392856088", + "1.1785127105", + "1.3863633363", + "1.1400038994", + "1.2005191849", + "1.2019111339", + "1.1777745265", + "1.1854530297", + "1.2081734207", + "1.1979749528", + "1.2153840488", + "1.2165381102", + "1.2131007802", + "1.2127618218", + "1.2395462941", + "1.2095037764", + "1.2131430549", + "1.2169676364", + "1.2171871702", + "1.1805398058", + "1.185416121", + "1.2064621611", + "1.1869143481", + "1.1942550952", + "1.1461665098", + "1.1386146041", + "1.1693271851", + "1.1655029381", + "1.1778520303", + "1.1827096661", + "1.1773543118", + "1.1769177416", + "1.1679688704", + "1.1799852906", + "1.1576345493", + "1.1735830679", + "1.182295807", + "1.1780105251", + "1.1862080915", + "1.201464313", + "1.1969336605", + "1.1380279565", + "1.1757784667", + "1.1662798633", + "1.1283739346", + "1.3985492621", + "1.4311859199", + "1.3966624806", + "1.4053413341", + "1.3792317903", + "1.1930219504", + "1.0462921785", + "1.0383247532", + "1.0916598643", + "1.0549319496", + "1.0599724407", + "1.0577418426", + "1.0453954219", + "1.050338023", + "1.0035877385", + "1.0588832146", + "1.0532454633", + "1.0987308862", + "1.0768260644", + "1.0691808282", + "1.0565109542", + "0.9693998189", + "0.973317435", + "1.0814721602", + "1.0640281639", + "1.0679754764", + "1.0627878254", + "1.0353716926", + "1.1244470576", + "1.0720166237", + "1.0720629986", + "1.1691118685", + "1.1996588313", + "1.155070645", + "1.1620630164", + "1.1348266716", + "1.1402144698", + "1.1393815919", + "1.1315482763", + "1.0741688944", + "1.2227826467", + "1.2769476142", + "1.2439705375", + "1.2331689366", + "1.2404748512", + "1.1810700126", + "1.1936708435", + "1.2007284565", + "1.1959664242", + "1.2453294657", + "1.2513163379", + "1.260715187", + "1.2728065672", + "1.2079826072", + "1.2497713283", + "1.247902912", + "1.1743173498", + "1.1724450788", + "1.2006408525", + "1.1937442216", + "1.2455629729", + "1.1492388617", + "1.0945682033", + "1.1123819342", + "1.0751265384", + "1.1075262659", + "1.1907570267", + "1.2039993829", + "1.2189156103", + "1.2341520175", + "1.147920613", + "1.0803096621", + "1.14069238", + "1.2133966743", + "1.0592311691", + "1.0880897712", + "1.0942120198", + "1.1510013917", + "1.1043315098", + "1.1108451556", + "1.1156275016", + "1.0968761409", + "1.1231226878", + "1.1904003898", + "1.196954554", + "1.224740069", + "1.2377430592", + "1.2343633592", + "1.1130002788", + "1.1400445859", + "1.1033336304", + "1.1087508489", + "1.1607354608", + "1.1930486821", + "1.1849840605", + "1.1933995239", + "1.1804941812", + "1.1676010952", + "1.1721475832", + "1.2257728751", + "1.2811586965", + "1.3779160177", + "1.2910404356", + "1.2904101307", + "1.3182358824", + "1.2556235227", + "1.322469642", + "1.3175157155", + "1.2824906148", + "1.2917540805", + "1.1870401994", + "1.4785972647", + "1.404751956", + "1.4139409764", + "1.3414506041", + "1.3537414457", + "1.3433563462", + "1.4455599553", + "1.3727915931", + "1.410979208", + "1.4050620822", + "1.3829465642", + "1.3121737777", + "1.3149186212", + "1.3595771713", + "1.3533379297", + "1.3579267303", + "1.3233251425", + "1.314906118", + "1.3068692766", + "1.3665183981", + "1.3253470422", + "1.3330157446", + "1.3035365734", + "1.2562834931", + "1.3598461454", + "1.2979302565", + "1.2910636118", + "1.3112918437", + "1.3874361013", + "1.3997076599", + "1.4082965231", + "1.4034087545", + "1.3972040281", + "1.3870442333", + "1.3860623445", + "1.3794092626", + "1.4976041401", + "1.4784874152", + "1.3524225351", + "1.4017078781", + "1.4016351962", + "1.3952759678", + "1.3977887383", + "1.4638712384", + "1.458421216", + "1.4132996766", + "1.399264333", + "1.3966114309", + "1.3851153469", + "1.4038487406", + "1.3723251164", + "1.3632809661", + "1.3591194062", + "1.3746801001", + "1.370150411", + "1.3610484633", + "1.3676183777", + "1.3822936915", + "1.397044264", + "1.4059786308", + "1.4324433185", + "1.383973926", + "1.4079856937", + "1.4189107173", + "1.3625990719", + "1.416918811", + "1.3918509587", + "1.3677883696", + "1.3672895988", + "1.3749829159", + "1.3689478062", + "1.3420798831", + "1.3500249412", + "1.3531671506", + "1.3244474351" + ] + }, + "essential_compounds": [ + "12dgr180", + "12ppd_S", + "26dap_M", + "4abut", + "4hbz", + "4hpro_LT", + "C02528", + "ac", + "acald", + "acgam", + "actn_R", + "adn", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "amp", + "arab_L", + "arbt", + "arg_L", + "arsenb", + "asn_L", + "asp_L", + "btn", + "ca2", + "cd2", + "cellb", + "cgly", + "chol", + "cholate", + "chols", + "chtbs", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dgchol", + "dgsn", + "din", + "drib", + "duri", + "etha", + "etoh", + "fe2", + "fe3", + "fecrm", + "fol", + "for", + "fru", + "gal", + "galt", + "gam", + "gbbtn", + "gcald", + "gchola", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gua", + "h2o", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "ins", + "k", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "lyx_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mqn8", + "n2o", + "na1", + "nac", + "nh4", + "no2", + "no", + "o2", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "ppa", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "pyr", + "q8", + "rib_D", + "ribflv", + "rmn", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "sheme", + "so4", + "spmd", + "sucr", + "taur", + "tchola", + "tdchola", + "thm", + "thr_L", + "thymd", + "tma", + "tre", + "tyr_L", + "ura", + "uri", + "val_L", + "xan", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_417.json b/agents/agora/agent_417.json new file mode 100644 index 0000000000000000000000000000000000000000..ce9edb222f78f4a8de096cb29ec2964c2a598985 --- /dev/null +++ b/agents/agora/agent_417.json @@ -0,0 +1,981 @@ +{ + "id": 417, + "name": "Fusobacterium_nucleatum_subsp_animalis_D11", + "N_R": 906, + "taxonomy": { + "k": 417, + "tax_distance": [ + "2.5191039174", + "2.1012260501", + "2.094526821", + "2.3211095281", + "2.0025094542", + "2.0476381411", + "2.0289328433", + "2.025990249", + "2.0899718473", + "2.0083277554", + "2.0253924588", + "2.1335147726", + "2.1065325509", + "2.3345465088", + "2.3829033259", + "2.4132358365", + "2.2935854386", + "2.3025095554", + "2.337984031", + "1.870968347", + "1.8062973703", + "1.5557761116", + "1.4891256792", + "1.3676460025", + "1.1934667237", + "1.1876555156", + "1.1843009442", + "1.1866619986", + "1.1708957086", + "1.1622099457", + "1.1646608518", + "1.2662467879", + "1.2757845907", + "1.2721506807", + "1.2878467493", + "1.2563451693", + "1.2790911134", + "1.2973970249", + "1.2783650619", + "1.5713057209", + "1.3161473422", + "1.2347862862", + "1.2415515924", + "1.2441591725", + "1.2409274305", + "1.2439008122", + "1.2390022073", + "1.2393872426", + "1.2335723318", + "1.2256111422", + "1.1671889642", + "1.1727013642", + "1.1669605309", + "1.1391142603", + "1.1456360044", + "1.1747380016", + "1.1486611148", + "1.1466450872", + "1.1673994928", + "1.1650595981", + "1.1483177706", + "1.1736685422", + "1.175743332", + "1.1744124388", + "1.1888036563", + "1.1905258182", + "1.1905258182", + "1.1971714009", + "1.1971714009", + "1.1971714009", + "1.1971714009", + "1.1971714009", + "1.1971714009", + "1.1971714009", + "1.1971714009", + "1.1930920382", + "1.1934377754", + "1.1870060678", + "1.1974985424", + "1.1965933005", + "1.1926951309", + "1.1909524573", + "1.1922710271", + "1.1887691466", + "1.1836913983", + "1.1870365239", + "1.1924822907", + "1.187944099", + "1.1729441429", + "1.1813152578", + "1.1760398726", + "1.1921878136", + "1.1874905244", + "1.1916240937", + "1.1695843831", + "1.1641841993", + "1.1782505544", + "1.1889109634", + "1.2057080064", + "1.1881177162", + "1.1781225977", + "1.1768047801", + "1.1575544002", + "1.1704328892", + "1.2293053342", + "1.2241534225", + "1.2910496798", + "1.2572104238", + "1.194401783", + "1.1981280398", + "1.2008615069", + "1.1937574254", + "1.1937574254", + "1.1751335232", + "1.1780376695", + "1.1699371528", + "1.2054628515", + "1.142240302", + "1.1201493886", + "1.1380137449", + "1.1247427496", + "1.125168342", + "1.2434200556", + "1.2506105064", + "1.2720515193", + "1.0766478036", + "1.2463967569", + "1.253071991", + "1.2377088987", + "1.2573429039", + "1.2465299899", + "1.2515964762", + "1.2431001986", + "1.2361500935", + "1.2270203964", + "1.2276785168", + "1.24659244", + "1.2197109961", + "1.2017467856", + "1.2956347265", + "1.2970086002", + "1.2663201879", + "1.3238998785", + "1.261478466", + "1.2669724088", + "1.2640113837", + "1.2887183688", + "1.27789592", + "1.186052848", + "1.1571427585", + "1.1183316985", + "1.0962304053", + "1.087588599", + "1.0824684079", + "1.1193400336", + "1.1218351595", + "1.0936470906", + "1.0820091367", + "1.0855956457", + "1.1545487565", + "1.1612571386", + "1.130886192", + "1.2548042652", + "1.2492893698", + "1.251630421", + "1.2093534948", + "1.2054995153", + "1.243406089", + "1.2352292747", + "1.2039872522", + "1.2055466109", + "1.2235666046", + "1.1802618099", + "1.1694256809", + "1.1705862334", + "1.2040725748", + "1.1922490221", + "1.1736221649", + "1.1926107872", + "1.1739427885", + "1.1877577307", + "1.1819751597", + "1.1809067777", + "1.2014652294", + "1.197252682", + "1.1801336366", + "1.2143620106", + "1.1991277689", + "1.2042400779", + "1.2036333924", + "1.168031762", + "1.1640115538", + "1.1485442022", + "1.1668907074", + "1.1638243326", + "1.1381327388", + "1.1211199909", + "1.11581234", + "1.1205541246", + "1.1196955139", + "1.1524614738", + "1.151480812", + "1.1755206096", + "1.1534115826", + "1.1139035906", + "1.1170680014", + "1.1421298934", + "1.1384210093", + "1.1141703926", + "1.1067130427", + "1.109066302", + "1.1182438369", + "1.04400974", + "1.0866128408", + "1.0709090701", + "1.0647473069", + "1.0584670621", + "1.0463644445", + "1.0495347839", + "1.0917068733", + "1.5260987045", + "1.6108769036", + "1.5234123285", + "1.5085946164", + "1.4869219836", + "1.0405996425", + "1.0594040485", + "1.1093369136", + "1.0709761616", + "1.0862133646", + "1.1997505022", + "1.1535211093", + "1.1751727835", + "1.1338394374", + "1.0471777489", + "1.0595600918", + "1.066051163", + "1.1264776998", + "1.1176781672", + "1.1157594362", + "1.1417617173", + "1.1390692817", + "1.1303012261", + "1.1618218497", + "1.1699053142", + "1.154094041", + "1.1274757912", + "1.1221302181", + "1.127540894", + "1.1162477528", + "1.061216858", + "1.0663016799", + "1.0655464564", + "1.1123580409", + "1.0677877615", + "1.0502395631", + "1.1276643693", + "1.0809317295", + "1.056014267", + "1.0690497582", + "1.0396652446", + "1.0048788864", + "1.0889669222", + "1.0913207086", + "1.0960979183", + "1.1014435163", + "1.0671424905", + "1.1277982398", + "1.1346343552", + "1.1311453527", + "1.1438104181", + "1.1298943753", + "1.1096784691", + "1.1010777004", + "1.1477295686", + "1.1670078413", + "1.2176868612", + "1.060609245", + "1.0297819509", + "1.1227876648", + "1.1217709649", + "1.1089918892", + "1.0659166021", + "1.1307399163", + "1.1216831641", + "1.1243354264", + "1.1554747317", + "1.0971335985", + "1.0823998957", + "1.0640247674", + "1.0923404061", + "1.0638474808", + "1.1189933981", + "1.1499867981", + "1.1726196459", + "1.1293034689", + "1.1006496804", + "1.1208965771", + "1.1006501887", + "1.0870362138", + "1.0517811429", + "1.0867307024", + "1.0178202265", + "1.0350855975", + "1.1178943085", + "1.1062596477", + "1.1033612214", + "1.1135155286", + "1.1218784141", + "1.1112010529", + "1.1231416205", + "1.111608163", + "1.1091466564", + "1.0775575248", + "1.0835524306", + "1.0898104278", + "1.0769648824", + "1.1105035193", + "1.042732731", + "1.1012306713", + "1.0983754387", + "1.0886159712", + "1.0878410948", + "1.1139832196", + "1.0905919828", + "1.0602858448", + "0.9749577454", + "0.9867622902", + "0.9877795661", + "0.9318027889", + "0.9439297094", + "0.9406413074", + "0.9219671083", + "0.93064906", + "0.9266082731", + "0.9166451233", + "0.9424461499", + "0.9391348132", + "0.9025055349", + "0.9210439676", + "0.8788027086", + "0.8814816474", + "0.8954720627", + "0.8969731724", + "0.8836433273", + "0.8731219332", + "0.8998763655", + "0.8857994184", + "0.8457931213", + "0.8531566569", + "1.0227242204", + "0.8430577116", + "0.8476020659", + "0.8512058398", + "0.8471532316", + "0.8142712049", + "0.8440798797", + "0.8641391219", + "0.8661318456", + "0.8642142462", + "0.8475311572", + "0.8463712276", + "0.8121348178", + "0.8144106193", + "0.9402940128", + "0.9514883689", + "0.8377751446", + "0.8434325564", + "0.8335038648", + "0.7976356842", + "0.8232440811", + "0.8139789666", + "0.8061142188", + "0.8052602884", + "0.8127848443", + "0.8067773705", + "0.8258462894", + "0.8197699726", + "0.8314923234", + "0.8262595476", + "0.8130432984", + "0.8011095967", + "0.8107703226", + "0.8066168383", + "0.8125191409", + "0.8045707961", + "0.7800102604", + "0.7894232269", + "0.7832548115", + "0.8112859991", + "0.8089810515", + "0.2631357838", + "0.2769669066", + "0.2896590173", + "0.246411749", + "0.2500356479", + "0.2388225047", + "0.2548729026", + "0.2354228148", + "0.2318461137", + "0.2487631726", + "0.2385641644", + "0.2431229362", + "0.2511759579", + "0.2369611214", + "0.2287859148", + "0.2888768943", + "0.265339121", + "0.265656147", + "0.2662995609", + "0.2608069662", + "0.2509123421", + "0.3110894185", + "0.2819982856", + "0.1618601792", + "0.1806751986", + "0.0", + "0.1957532769", + "0.1774566516", + "0.2291480703", + "0.2454532618", + "0.252809662", + "0.235207839", + "0.3898654606", + "0.3960367177", + "0.3997543752", + "0.4350164668", + "0.3890280848", + "0.4147038925", + "0.3516149199", + "0.3344964818", + "0.6538223303", + "0.6648110189", + "0.5988823094", + "0.6001591858", + "0.5583423379", + "0.5747615089", + "0.5731451748", + "0.5968843042", + "0.584308843", + "0.5621060233", + "0.743297029", + "0.7495963646", + "0.7295980592", + "0.7421265051", + "0.7406525074", + "0.7090542976", + "0.7188534371", + "0.7677819871", + "0.8032061502", + "0.7780189709", + "0.7587071687", + "0.7075610935", + "0.7193596942", + "0.719053144", + "0.7498690394", + "0.7502267352", + "0.6829442141", + "0.8207168205", + "0.8253004617", + "0.8350440377", + "0.8148055818", + "0.7765009016", + "0.8458943984", + "0.8268580749", + "0.8317197631", + "0.7685079167", + "0.8002200301", + "0.8088560888", + "0.820513843", + "0.8029493035", + "0.7895849879", + "0.7539520063", + "0.7530376339", + "0.7595043237", + "0.8353426064", + "0.8154591187", + "0.8908420171", + "0.844852464", + "0.7991948873", + "0.8053999242", + "0.8103402136", + "0.8050315549", + "0.7992299539", + "0.8266702229", + "0.8088137591", + "0.8007642655", + "0.7917512985", + "0.8136887755", + "0.8081869307", + "0.8098208227", + "0.7737707316", + "0.775927203", + "0.7490529901", + "0.8323166806", + "0.8080549043", + "0.7934130907", + "0.7736817448", + "0.9094054355", + "0.9126652438", + "0.9405722251", + "0.8952080461", + "0.8993113621", + "0.9133598416", + "0.9270763074", + "0.9507155286", + "0.8919108369", + "0.869924669", + "0.8985309015", + "0.8667815569", + "0.8700953822", + "0.883062629", + "0.8634172641", + "0.8706796083", + "0.8563147554", + "0.8522263265", + "0.9339699592", + "0.9261614248", + "0.8804806153", + "0.901247578", + "0.8979283073", + "0.9511376668", + "0.8785360211", + "0.8627472442", + "0.8803797711", + "0.8812028868", + "0.882632749", + "0.908053719", + "0.9199783684", + "0.9784423886", + "0.9818287828", + "0.9648744603", + "0.950106598", + "0.9308804651", + "0.9000145858", + "1.2612966476", + "1.2857371241", + "1.2495818456", + "1.2602324503", + "1.2374769158", + "1.2237252949", + "1.3140736804", + "1.3429178655", + "1.3440357877", + "1.2683049231", + "1.2658370478", + "1.2659037634", + "1.2596938692", + "1.2777810778", + "1.253798222", + "1.2296503915", + "1.1924472816", + "1.2005902792", + "1.1787717006", + "1.1995033501", + "1.1577877798", + "1.1722753127", + "1.1739277389", + "1.1795435799", + "1.1720507645", + "1.1715853654", + "1.1688462175", + "1.1591485904", + "1.1768558127", + "1.1570021771", + "1.159449328", + "1.1551894936", + "1.1698479406", + "1.1889480427", + "1.132245924", + "1.1546466982", + "1.162684329", + "1.1618264194", + "1.145083074", + "1.1343052345", + "1.1344363922", + "1.1391290398", + "1.1424458136", + "1.1751664256", + "1.2063685141", + "1.2012965362", + "1.1252382657", + "1.1261295507", + "1.121381239", + "1.1274304891", + "1.0484621711", + "0.945418854", + "0.959051367", + "1.1982784687", + "1.4061290945", + "1.1597696576", + "1.2202849431", + "1.2216768921", + "1.1975402847", + "1.2052187879", + "1.2279391789", + "1.217740711", + "1.235149807", + "1.2363038684", + "1.2328665384", + "1.23252758", + "1.2593120523", + "1.2292695346", + "1.2329088131", + "1.2367333946", + "1.2369529284", + "1.200305564", + "1.2051818792", + "1.2262279193", + "1.2066801063", + "1.2140208534", + "1.165932268", + "1.1583803623", + "1.1890929433", + "1.1852686963", + "1.1976177885", + "1.2024754243", + "1.19712007", + "1.1966834998", + "1.1877346286", + "1.1997510488", + "1.1774003075", + "1.1933488261", + "1.2020615652", + "1.1977762833", + "1.2059738497", + "1.2212300712", + "1.2166994187", + "1.1577937147", + "1.1955442249", + "1.1860456215", + "1.1481396928", + "1.4183150203", + "1.4509516781", + "1.4164282388", + "1.4251070923", + "1.3989975485", + "1.2127877086", + "1.0660579367", + "1.0580905114", + "1.1114256225", + "1.0746977078", + "1.0797381989", + "1.0775076008", + "1.0651611801", + "1.0701037812", + "1.0233534967", + "1.0786489728", + "1.0730112215", + "1.1184966444", + "1.0965918226", + "1.0889465864", + "1.0762767124", + "0.9891655771", + "0.9930831932", + "1.1012379184", + "1.0837939221", + "1.0877412346", + "1.0825535836", + "1.0551374508", + "1.1442128158", + "1.0917823819", + "1.0918287568", + "1.1888776267", + "1.2194245895", + "1.1748364032", + "1.1818287746", + "1.1545924298", + "1.159980228", + "1.1591473501", + "1.1513140345", + "1.0939346526", + "1.2425484049", + "1.2967133724", + "1.2637362957", + "1.2529346948", + "1.2602406094", + "1.2008357708", + "1.2134366017", + "1.2204942147", + "1.2157321824", + "1.2650952239", + "1.2710820961", + "1.2804809452", + "1.2925723254", + "1.2277483654", + "1.2695370865", + "1.2676686702", + "1.194083108", + "1.192210837", + "1.2204066107", + "1.2135099798", + "1.2653287311", + "1.1690046199", + "1.1143339615", + "1.1321476924", + "1.0948922966", + "1.1272920241", + "1.2105227849", + "1.2237651411", + "1.2386813685", + "1.2539177757", + "1.1676863712", + "1.1000754203", + "1.1604581382", + "1.2331624325", + "1.0789969273", + "1.1078555294", + "1.113977778", + "1.1707671499", + "1.124097268", + "1.1306109138", + "1.1353932598", + "1.1166418991", + "1.142888446", + "1.210166148", + "1.2167203122", + "1.2445058272", + "1.2575088174", + "1.2541291174", + "1.132766037", + "1.1598103441", + "1.1230993886", + "1.1285166071", + "1.180501219", + "1.2128144403", + "1.2047498187", + "1.2131652821", + "1.2002599394", + "1.1873668534", + "1.1919133414", + "1.2455386333", + "1.3009244547", + "1.3976817759", + "1.3108061938", + "1.3101758889", + "1.3380016406", + "1.2753892809", + "1.3422354002", + "1.3372814737", + "1.302256373", + "1.3115198387", + "1.2068059576", + "1.4983630229", + "1.4245177142", + "1.4337067346", + "1.3612163623", + "1.3735072039", + "1.3631221044", + "1.4653257135", + "1.3925573513", + "1.4307449662", + "1.4248278404", + "1.4027123224", + "1.3319395359", + "1.3346843794", + "1.3793429295", + "1.3731036879", + "1.3776924885", + "1.3430909007", + "1.3346718762", + "1.3266350348", + "1.3862841563", + "1.3451128004", + "1.3527815028", + "1.3233023316", + "1.2760492513", + "1.3796119036", + "1.3176960147", + "1.31082937", + "1.3310576019", + "1.4072018595", + "1.4194734181", + "1.4280622813", + "1.4231745127", + "1.4169697863", + "1.4068099915", + "1.4058281027", + "1.3991750208", + "1.5173698983", + "1.4982531734", + "1.3721882933", + "1.4214736363", + "1.4214009544", + "1.415041726", + "1.4175544965", + "1.4836369966", + "1.4781869742", + "1.4330654348", + "1.4190300912", + "1.4163771891", + "1.4048811051", + "1.4236144988", + "1.3920908746", + "1.3830467243", + "1.3788851644", + "1.3944458583", + "1.3899161692", + "1.3808142215", + "1.3873841359", + "1.4020594497", + "1.4168100222", + "1.425744389", + "1.4522090767", + "1.4037396842", + "1.4277514519", + "1.4386764755", + "1.3823648301", + "1.4366845692", + "1.4116167169", + "1.3875541278", + "1.387055357", + "1.3947486741", + "1.3887135644", + "1.3618456413", + "1.3697906994", + "1.3729329088", + "1.3442131933" + ] + }, + "essential_compounds": [ + "12dgr180", + "26dap_M", + "2obut", + "4abz", + "4hbz", + "ac", + "acald", + "acgam", + "actn_R", + "ade", + "adn", + "adocbl", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arsenb", + "asn_L", + "asp_L", + "btn", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "chols", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dextrin", + "dgsn", + "din", + "duri", + "etoh", + "fe2", + "fe3", + "fecrm", + "fol", + "for", + "fru", + "fuc1p_L", + "g6p", + "galt", + "gam", + "gbbtn", + "gcald", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gua", + "h2o", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "ins", + "k", + "lac_L", + "leu_L", + "lys_L", + "malt", + "malthx", + "malttr", + "man6p", + "man", + "mantr", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mqn8", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "o2", + "ocdca", + "ocdcea", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "pnto_R", + "ppa", + "ppi", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "pyr", + "rib_D", + "ribflv", + "salcn", + "sbt_D", + "ser_L", + "sheme", + "so4", + "spmd", + "stys", + "succ", + "sucr", + "thm", + "thr_L", + "thymd", + "tma", + "tre", + "tyr_L", + "ura", + "urea", + "uri", + "val_L", + "xan", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_418.json b/agents/agora/agent_418.json new file mode 100644 index 0000000000000000000000000000000000000000..709aad5ee3fb498a597a8a8718a4f8022204f4bb --- /dev/null +++ b/agents/agora/agent_418.json @@ -0,0 +1,983 @@ +{ + "id": 418, + "name": "Fusobacterium_nucleatum_subsp_nucleatum_ATCC_25586", + "N_R": 1498, + "taxonomy": { + "k": 418, + "tax_distance": [ + "2.4952136077", + "2.0773357404", + "2.0706365113", + "2.2972192184", + "1.9786191445", + "2.0237478314", + "2.0050425336", + "2.0020999393", + "2.0660815376", + "1.9844374457", + "2.0015021491", + "2.1096244629", + "2.0826422412", + "2.3106561991", + "2.3590130162", + "2.3893455268", + "2.2696951289", + "2.2786192457", + "2.3140937213", + "1.8470780373", + "1.7824070606", + "1.5318858019", + "1.4652353695", + "1.3437556928", + "1.169576414", + "1.1637652059", + "1.1604106345", + "1.1627716889", + "1.1470053989", + "1.138319636", + "1.1407705421", + "1.2423564782", + "1.251894281", + "1.248260371", + "1.2639564396", + "1.2324548596", + "1.2552008037", + "1.2735067152", + "1.2544747522", + "1.5474154112", + "1.2922570325", + "1.2108959765", + "1.2176612827", + "1.2202688628", + "1.2170371208", + "1.2200105025", + "1.2151118976", + "1.2154969329", + "1.2096820221", + "1.2017208325", + "1.1432986545", + "1.1488110545", + "1.1430702212", + "1.1152239506", + "1.1217456947", + "1.1508476919", + "1.1247708051", + "1.1227547775", + "1.1435091831", + "1.1411692884", + "1.1244274609", + "1.1497782325", + "1.1518530223", + "1.1505221291", + "1.1649133466", + "1.1666355085", + "1.1666355085", + "1.1732810912", + "1.1732810912", + "1.1732810912", + "1.1732810912", + "1.1732810912", + "1.1732810912", + "1.1732810912", + "1.1732810912", + "1.1692017285", + "1.1695474657", + "1.1631157581", + "1.1736082327", + "1.1727029908", + "1.1688048212", + "1.1670621476", + "1.1683807174", + "1.1648788369", + "1.1598010886", + "1.1631462142", + "1.168591981", + "1.1640537893", + "1.1490538332", + "1.1574249481", + "1.1521495629", + "1.1682975039", + "1.1636002147", + "1.167733784", + "1.1456940734", + "1.1402938896", + "1.1543602447", + "1.1650206537", + "1.1818176967", + "1.1642274065", + "1.154232288", + "1.1529144704", + "1.1336640905", + "1.1465425795", + "1.2054150245", + "1.2002631128", + "1.2671593701", + "1.2333201141", + "1.1705114733", + "1.1742377301", + "1.1769711972", + "1.1698671157", + "1.1698671157", + "1.1512432135", + "1.1541473598", + "1.1460468431", + "1.1815725418", + "1.1183499923", + "1.0962590789", + "1.1141234352", + "1.1008524399", + "1.1012780323", + "1.2195297459", + "1.2267201967", + "1.2481612096", + "1.0527574939", + "1.2225064472", + "1.2291816813", + "1.213818589", + "1.2334525942", + "1.2226396802", + "1.2277061665", + "1.2192098889", + "1.2122597838", + "1.2031300867", + "1.2037882071", + "1.2227021303", + "1.1958206864", + "1.1778564759", + "1.2717444168", + "1.2731182905", + "1.2424298782", + "1.3000095688", + "1.2375881563", + "1.2430820991", + "1.240121074", + "1.2648280591", + "1.2540056103", + "1.1621625383", + "1.1332524488", + "1.0944413888", + "1.0723400956", + "1.0636982893", + "1.0585780982", + "1.0954497239", + "1.0979448498", + "1.0697567809", + "1.058118827", + "1.061705336", + "1.1306584468", + "1.1373668289", + "1.1069958823", + "1.2309139555", + "1.2253990601", + "1.2277401113", + "1.1854631851", + "1.1816092056", + "1.2195157793", + "1.211338965", + "1.1800969425", + "1.1816563012", + "1.1996762949", + "1.1563715002", + "1.1455353712", + "1.1466959237", + "1.1801822651", + "1.1683587124", + "1.1497318552", + "1.1687204775", + "1.1500524788", + "1.163867421", + "1.15808485", + "1.157016468", + "1.1775749197", + "1.1733623723", + "1.1562433269", + "1.1904717009", + "1.1752374592", + "1.1803497682", + "1.1797430827", + "1.1441414523", + "1.1401212441", + "1.1246538925", + "1.1430003977", + "1.1399340229", + "1.1142424291", + "1.0972296812", + "1.0919220303", + "1.0966638149", + "1.0958052042", + "1.1285711641", + "1.1275905023", + "1.1516302999", + "1.1295212729", + "1.0900132809", + "1.0931776917", + "1.1182395837", + "1.1145306996", + "1.0902800829", + "1.082822733", + "1.0851759923", + "1.0943535272", + "1.0201194303", + "1.0627225311", + "1.0470187604", + "1.0408569972", + "1.0345767524", + "1.0224741348", + "1.0256444742", + "1.0678165636", + "1.5022083948", + "1.5869865939", + "1.4995220188", + "1.4847043067", + "1.4630316739", + "1.0167093328", + "1.0355137388", + "1.0854466039", + "1.0470858519", + "1.0623230549", + "1.1758601925", + "1.1296307996", + "1.1512824738", + "1.1099491277", + "1.0232874392", + "1.0356697821", + "1.0421608533", + "1.1025873901", + "1.0937878575", + "1.0918691265", + "1.1178714076", + "1.115178972", + "1.1064109164", + "1.13793154", + "1.1460150045", + "1.1302037313", + "1.1035854815", + "1.0982399084", + "1.1036505843", + "1.0923574431", + "1.0373265483", + "1.0424113702", + "1.0416561467", + "1.0884677312", + "1.0438974518", + "1.0263492534", + "1.1037740596", + "1.0570414198", + "1.0321239573", + "1.0451594485", + "1.0157749349", + "0.9809885767", + "1.0650766125", + "1.0674303989", + "1.0722076086", + "1.0775532066", + "1.0432521808", + "1.1039079301", + "1.1107440455", + "1.107255043", + "1.1199201084", + "1.1060040656", + "1.0857881594", + "1.0771873907", + "1.1238392589", + "1.1431175316", + "1.1937965515", + "1.0367189353", + "1.0058916412", + "1.0988973551", + "1.0978806552", + "1.0851015795", + "1.0420262924", + "1.1068496066", + "1.0977928544", + "1.1004451167", + "1.131584422", + "1.0732432888", + "1.058509586", + "1.0401344577", + "1.0684500964", + "1.0399571711", + "1.0951030884", + "1.1260964884", + "1.1487293362", + "1.1054131592", + "1.0767593707", + "1.0970062674", + "1.076759879", + "1.0631459041", + "1.0278908332", + "1.0628403927", + "0.9939299168", + "1.0111952878", + "1.0940039988", + "1.082369338", + "1.0794709117", + "1.0896252189", + "1.0979881044", + "1.0873107432", + "1.0992513108", + "1.0877178533", + "1.0852563467", + "1.0536672151", + "1.0596621209", + "1.0659201181", + "1.0530745727", + "1.0866132096", + "1.0188424213", + "1.0773403616", + "1.074485129", + "1.0647256615", + "1.0639507851", + "1.0900929099", + "1.0667016731", + "1.0363955351", + "0.9510674357", + "0.9628719805", + "0.9638892564", + "0.9079124792", + "0.9200393997", + "0.9167509977", + "0.8980767986", + "0.9067587503", + "0.9027179634", + "0.8927548136", + "0.9185558402", + "0.9152445035", + "0.8786152252", + "0.8971536579", + "0.8549123989", + "0.8575913377", + "0.871581753", + "0.8730828627", + "0.8597530176", + "0.8492316235", + "0.8759860558", + "0.8619091087", + "0.8219028116", + "0.8292663472", + "0.9988339107", + "0.8191674019", + "0.8237117562", + "0.8273155301", + "0.8232629219", + "0.7903808952", + "0.82018957", + "0.8402488122", + "0.8422415359", + "0.8403239365", + "0.8236408475", + "0.8224809179", + "0.7882445081", + "0.7905203096", + "0.9164037031", + "0.9275980592", + "0.8138848349", + "0.8195422467", + "0.8096135551", + "0.7737453745", + "0.7993537714", + "0.7900886569", + "0.7822239091", + "0.7813699787", + "0.7888945346", + "0.7828870608", + "0.8019559797", + "0.7958796629", + "0.8076020137", + "0.8023692379", + "0.7891529887", + "0.777219287", + "0.7868800129", + "0.7827265286", + "0.7886288312", + "0.7806804864", + "0.7561199507", + "0.7655329172", + "0.7593645018", + "0.7873956894", + "0.7850907418", + "0.2392454741", + "0.2530765969", + "0.2657687076", + "0.2225214393", + "0.2261453382", + "0.214932195", + "0.2309825929", + "0.2115325051", + "0.207955804", + "0.2248728629", + "0.2146738547", + "0.2192326265", + "0.2272856482", + "0.2130708117", + "0.2048956051", + "0.2649865846", + "0.2414488113", + "0.2417658373", + "0.2424092512", + "0.2369166565", + "0.2270220324", + "0.2871991088", + "0.2581079759", + "0.1571724993", + "0.1759875187", + "0.1957532769", + "0.0", + "0.1314191447", + "0.2052577606", + "0.2215629521", + "0.2289193523", + "0.2113175293", + "0.3659751509", + "0.372146408", + "0.3758640655", + "0.4111261571", + "0.3651377751", + "0.3908135828", + "0.3277246102", + "0.3106061721", + "0.6299320206", + "0.6409207092", + "0.5749919997", + "0.5762688761", + "0.5344520282", + "0.5508711992", + "0.5492548651", + "0.5729939945", + "0.5604185333", + "0.5382157136", + "0.7194067193", + "0.7257060549", + "0.7057077495", + "0.7182361954", + "0.7167621977", + "0.6851639879", + "0.6949631274", + "0.7438916774", + "0.7793158405", + "0.7541286612", + "0.734816859", + "0.6836707838", + "0.6954693845", + "0.6951628343", + "0.7259787297", + "0.7263364255", + "0.6590539044", + "0.7968265108", + "0.801410152", + "0.811153728", + "0.7909152721", + "0.7526105919", + "0.8220040887", + "0.8029677652", + "0.8078294534", + "0.744617607", + "0.7763297204", + "0.7849657791", + "0.7966235333", + "0.7790589938", + "0.7656946782", + "0.7300616966", + "0.7291473242", + "0.735614014", + "0.8114522967", + "0.791568809", + "0.8669517074", + "0.8209621543", + "0.7753045776", + "0.7815096145", + "0.7864499039", + "0.7811412452", + "0.7753396442", + "0.8027799132", + "0.7849234494", + "0.7768739558", + "0.7678609888", + "0.7897984658", + "0.784296621", + "0.785930513", + "0.7498804219", + "0.7520368933", + "0.7251626804", + "0.8084263709", + "0.7841645946", + "0.769522781", + "0.7497914351", + "0.8855151258", + "0.8887749341", + "0.9166819154", + "0.8713177364", + "0.8754210524", + "0.8894695319", + "0.9031859977", + "0.9268252189", + "0.8680205272", + "0.8460343593", + "0.8746405918", + "0.8428912472", + "0.8462050725", + "0.8591723193", + "0.8395269544", + "0.8467892986", + "0.8324244457", + "0.8283360168", + "0.9100796495", + "0.9022711151", + "0.8565903056", + "0.8773572683", + "0.8740379976", + "0.9272473571", + "0.8546457114", + "0.8388569345", + "0.8564894614", + "0.8573125771", + "0.8587424393", + "0.8841634093", + "0.8960880587", + "0.9545520789", + "0.9579384731", + "0.9409841506", + "0.9262162883", + "0.9069901554", + "0.8761242761", + "1.2374063379", + "1.2618468144", + "1.2256915359", + "1.2363421406", + "1.2135866061", + "1.1998349852", + "1.2901833707", + "1.3190275558", + "1.320145478", + "1.2444146134", + "1.2419467381", + "1.2420134537", + "1.2358035595", + "1.2538907681", + "1.2299079123", + "1.2057600818", + "1.1685569719", + "1.1766999695", + "1.1548813909", + "1.1756130404", + "1.1338974701", + "1.148385003", + "1.1500374292", + "1.1556532702", + "1.1481604548", + "1.1476950557", + "1.1449559078", + "1.1352582807", + "1.152965503", + "1.1331118674", + "1.1355590183", + "1.1312991839", + "1.1459576309", + "1.165057733", + "1.1083556143", + "1.1307563885", + "1.1387940193", + "1.1379361097", + "1.1211927643", + "1.1104149248", + "1.1105460825", + "1.1152387301", + "1.1185555039", + "1.1512761159", + "1.1824782044", + "1.1774062265", + "1.101347956", + "1.102239241", + "1.0974909293", + "1.1035401794", + "1.0245718614", + "0.9215285443", + "0.9351610573", + "1.174388159", + "1.3822387848", + "1.1358793479", + "1.1963946334", + "1.1977865824", + "1.173649975", + "1.1813284782", + "1.2040488692", + "1.1938504013", + "1.2112594973", + "1.2124135587", + "1.2089762287", + "1.2086372703", + "1.2354217426", + "1.2053792249", + "1.2090185034", + "1.2128430849", + "1.2130626187", + "1.1764152543", + "1.1812915695", + "1.2023376096", + "1.1827897966", + "1.1901305437", + "1.1420419583", + "1.1344900526", + "1.1652026336", + "1.1613783866", + "1.1737274788", + "1.1785851146", + "1.1732297603", + "1.1727931901", + "1.1638443189", + "1.1758607391", + "1.1535099978", + "1.1694585164", + "1.1781712555", + "1.1738859736", + "1.18208354", + "1.1973397615", + "1.192809109", + "1.133903405", + "1.1716539152", + "1.1621553118", + "1.1242493831", + "1.3944247106", + "1.4270613684", + "1.3925379291", + "1.4012167826", + "1.3751072388", + "1.1888973989", + "1.042167627", + "1.0342002017", + "1.0875353128", + "1.0508073981", + "1.0558478892", + "1.0536172911", + "1.0412708704", + "1.0462134715", + "0.999463187", + "1.0547586631", + "1.0491209118", + "1.0946063347", + "1.0727015129", + "1.0650562767", + "1.0523864027", + "0.9652752674", + "0.9691928835", + "1.0773476087", + "1.0599036124", + "1.0638509249", + "1.0586632739", + "1.0312471411", + "1.1203225061", + "1.0678920722", + "1.0679384471", + "1.164987317", + "1.1955342798", + "1.1509460935", + "1.1579384649", + "1.1307021201", + "1.1360899183", + "1.1352570404", + "1.1274237248", + "1.0700443429", + "1.2186580952", + "1.2728230627", + "1.239845986", + "1.2290443851", + "1.2363502997", + "1.1769454611", + "1.189546292", + "1.196603905", + "1.1918418727", + "1.2412049142", + "1.2471917864", + "1.2565906355", + "1.2686820157", + "1.2038580557", + "1.2456467768", + "1.2437783605", + "1.1701927983", + "1.1683205273", + "1.196516301", + "1.1896196701", + "1.2414384214", + "1.1451143102", + "1.0904436518", + "1.1082573827", + "1.0710019869", + "1.1034017144", + "1.1866324752", + "1.1998748314", + "1.2147910588", + "1.230027466", + "1.1437960615", + "1.0761851106", + "1.1365678285", + "1.2092721228", + "1.0551066176", + "1.0839652197", + "1.0900874683", + "1.1468768402", + "1.1002069583", + "1.1067206041", + "1.1115029501", + "1.0927515894", + "1.1189981363", + "1.1862758383", + "1.1928300025", + "1.2206155175", + "1.2336185077", + "1.2302388077", + "1.1088757273", + "1.1359200344", + "1.0992090789", + "1.1046262974", + "1.1566109093", + "1.1889241306", + "1.180859509", + "1.1892749724", + "1.1763696297", + "1.1634765437", + "1.1680230317", + "1.2216483236", + "1.277034145", + "1.3737914662", + "1.2869158841", + "1.2862855792", + "1.3141113309", + "1.2514989712", + "1.3183450905", + "1.313391164", + "1.2783660633", + "1.287629529", + "1.1829156479", + "1.4744727132", + "1.4006274045", + "1.4098164249", + "1.3373260526", + "1.3496168942", + "1.3392317947", + "1.4414354038", + "1.3686670416", + "1.4068546565", + "1.4009375307", + "1.3788220127", + "1.3080492262", + "1.3107940697", + "1.3554526198", + "1.3492133782", + "1.3538021788", + "1.319200591", + "1.3107815665", + "1.3027447251", + "1.3623938466", + "1.3212224907", + "1.3288911931", + "1.2994120219", + "1.2521589416", + "1.3557215939", + "1.293805705", + "1.2869390603", + "1.3071672922", + "1.3833115498", + "1.3955831084", + "1.4041719716", + "1.399284203", + "1.3930794766", + "1.3829196818", + "1.381937793", + "1.3752847111", + "1.4934795886", + "1.4743628637", + "1.3482979836", + "1.3975833266", + "1.3975106447", + "1.3911514163", + "1.3936641868", + "1.4597466869", + "1.4542966645", + "1.4091751251", + "1.3951397815", + "1.3924868794", + "1.3809907954", + "1.3997241891", + "1.3682005649", + "1.3591564146", + "1.3549948547", + "1.3705555486", + "1.3660258595", + "1.3569239118", + "1.3634938262", + "1.37816914", + "1.3929197125", + "1.4018540793", + "1.428318767", + "1.3798493745", + "1.4038611422", + "1.4147861658", + "1.3584745204", + "1.4127942595", + "1.3877264072", + "1.3636638181", + "1.3631650473", + "1.3708583644", + "1.3648232547", + "1.3379553316", + "1.3459003897", + "1.3490425991", + "1.3203228836" + ] + }, + "essential_compounds": [ + "12dgr180", + "26dap_M", + "4abut", + "4abz", + "4hbz", + "C02528", + "ac", + "acald", + "acgam", + "ade", + "adocbl", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_L", + "arabttr", + "arbt", + "arg_L", + "arsenb", + "asn_L", + "asp_L", + "btn", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cholate", + "chols", + "chtbs", + "cl", + "co2", + "cobalt2", + "crn", + "cro4", + "csn", + "ctbt", + "cu2", + "cys_L", + "dcyt", + "dgchol", + "etoh", + "fe2", + "fe3", + "fecrm", + "fol", + "for", + "fru", + "gal", + "galt", + "gam", + "gbbtn", + "gcald", + "gchola", + "glc_D", + "glcn", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gua", + "h2o", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "inulin", + "k", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "malt", + "malthx", + "malttr", + "man", + "mantr", + "melib", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mqn8", + "n2o", + "na1", + "nac", + "nh4", + "no2", + "no", + "o2", + "ocdcea", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "ppa", + "ppi", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "rib_D", + "ribflv", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "sheme", + "so4", + "spmd", + "stys", + "succ", + "sucr", + "taur", + "tchola", + "tdchola", + "thm", + "thr_L", + "tre", + "tyr_L", + "ura", + "urea", + "val_L", + "xan", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_419.json b/agents/agora/agent_419.json new file mode 100644 index 0000000000000000000000000000000000000000..86ca07a5c7d0b8edbc5a7082fe2d543f35958cde --- /dev/null +++ b/agents/agora/agent_419.json @@ -0,0 +1,988 @@ +{ + "id": 419, + "name": "Fusobacterium_nucleatum_subsp_vincentii_3_1_27", + "N_R": 1304, + "taxonomy": { + "k": 419, + "tax_distance": [ + "2.4769169824", + "2.0590391151", + "2.052339886", + "2.2789225931", + "1.9603225192", + "2.0054512061", + "1.9867459083", + "1.983803314", + "2.0477849123", + "1.9661408204", + "1.9832055238", + "2.0913278376", + "2.0643456159", + "2.2923595738", + "2.3407163909", + "2.3710489015", + "2.2513985036", + "2.2603226204", + "2.295797096", + "1.828781412", + "1.7641104353", + "1.5135891766", + "1.4469387442", + "1.3254590675", + "1.1512797887", + "1.1454685806", + "1.1421140092", + "1.1444750636", + "1.1287087736", + "1.1200230107", + "1.1224739168", + "1.2240598529", + "1.2335976557", + "1.2299637457", + "1.2456598143", + "1.2141582343", + "1.2369041784", + "1.2552100899", + "1.2361781269", + "1.5291187859", + "1.2739604072", + "1.1925993512", + "1.1993646574", + "1.2019722375", + "1.1987404955", + "1.2017138772", + "1.1968152723", + "1.1972003076", + "1.1913853968", + "1.1834242072", + "1.1250020292", + "1.1305144292", + "1.1247735959", + "1.0969273253", + "1.1034490694", + "1.1325510666", + "1.1064741798", + "1.1044581522", + "1.1252125578", + "1.1228726631", + "1.1061308356", + "1.1314816072", + "1.133556397", + "1.1322255038", + "1.1466167213", + "1.1483388832", + "1.1483388832", + "1.1549844659", + "1.1549844659", + "1.1549844659", + "1.1549844659", + "1.1549844659", + "1.1549844659", + "1.1549844659", + "1.1549844659", + "1.1509051032", + "1.1512508404", + "1.1448191328", + "1.1553116074", + "1.1544063655", + "1.1505081959", + "1.1487655223", + "1.1500840921", + "1.1465822116", + "1.1415044633", + "1.1448495889", + "1.1502953557", + "1.145757164", + "1.1307572079", + "1.1391283228", + "1.1338529376", + "1.1500008786", + "1.1453035894", + "1.1494371587", + "1.1273974481", + "1.1219972643", + "1.1360636194", + "1.1467240284", + "1.1635210714", + "1.1459307812", + "1.1359356627", + "1.1346178451", + "1.1153674652", + "1.1282459542", + "1.1871183992", + "1.1819664875", + "1.2488627448", + "1.2150234888", + "1.152214848", + "1.1559411048", + "1.1586745719", + "1.1515704904", + "1.1515704904", + "1.1329465882", + "1.1358507345", + "1.1277502178", + "1.1632759165", + "1.100053367", + "1.0779624536", + "1.0958268099", + "1.0825558146", + "1.082981407", + "1.2012331206", + "1.2084235714", + "1.2298645843", + "1.0344608686", + "1.2042098219", + "1.210885056", + "1.1955219637", + "1.2151559689", + "1.2043430549", + "1.2094095412", + "1.2009132636", + "1.1939631585", + "1.1848334614", + "1.1854915818", + "1.204405505", + "1.1775240611", + "1.1595598506", + "1.2534477915", + "1.2548216652", + "1.2241332529", + "1.2817129435", + "1.219291531", + "1.2247854738", + "1.2218244487", + "1.2465314338", + "1.235708985", + "1.143865913", + "1.1149558235", + "1.0761447635", + "1.0540434703", + "1.045401664", + "1.0402814729", + "1.0771530986", + "1.0796482245", + "1.0514601556", + "1.0398222017", + "1.0434087107", + "1.1123618215", + "1.1190702036", + "1.088699257", + "1.2126173302", + "1.2071024348", + "1.209443486", + "1.1671665598", + "1.1633125803", + "1.201219154", + "1.1930423397", + "1.1618003172", + "1.1633596759", + "1.1813796696", + "1.1380748749", + "1.1272387459", + "1.1283992984", + "1.1618856398", + "1.1500620871", + "1.1314352299", + "1.1504238522", + "1.1317558535", + "1.1455707957", + "1.1397882247", + "1.1387198427", + "1.1592782944", + "1.155065747", + "1.1379467016", + "1.1721750756", + "1.1569408339", + "1.1620531429", + "1.1614464574", + "1.125844827", + "1.1218246188", + "1.1063572672", + "1.1247037724", + "1.1216373976", + "1.0959458038", + "1.0789330559", + "1.073625405", + "1.0783671896", + "1.0775085789", + "1.1102745388", + "1.109293877", + "1.1333336746", + "1.1112246476", + "1.0717166556", + "1.0748810664", + "1.0999429584", + "1.0962340743", + "1.0719834576", + "1.0645261077", + "1.066879367", + "1.0760569019", + "1.001822805", + "1.0444259058", + "1.0287221351", + "1.0225603719", + "1.0162801271", + "1.0041775095", + "1.0073478489", + "1.0495199383", + "1.4839117695", + "1.5686899686", + "1.4812253935", + "1.4664076814", + "1.4447350486", + "0.9984127075", + "1.0172171135", + "1.0671499786", + "1.0287892266", + "1.0440264296", + "1.1575635672", + "1.1113341743", + "1.1329858485", + "1.0916525024", + "1.0049908139", + "1.0173731568", + "1.023864228", + "1.0842907648", + "1.0754912322", + "1.0735725012", + "1.0995747823", + "1.0968823467", + "1.0881142911", + "1.1196349147", + "1.1277183792", + "1.111907106", + "1.0852888562", + "1.0799432831", + "1.085353959", + "1.0740608178", + "1.019029923", + "1.0241147449", + "1.0233595214", + "1.0701711059", + "1.0256008265", + "1.0080526281", + "1.0854774343", + "1.0387447945", + "1.013827332", + "1.0268628232", + "0.9974783096", + "0.9626919514", + "1.0467799872", + "1.0491337736", + "1.0539109833", + "1.0592565813", + "1.0249555555", + "1.0856113048", + "1.0924474202", + "1.0889584177", + "1.1016234831", + "1.0877074403", + "1.0674915341", + "1.0588907654", + "1.1055426336", + "1.1248209063", + "1.1754999262", + "1.01842231", + "0.9875950159", + "1.0806007298", + "1.0795840299", + "1.0668049542", + "1.0237296671", + "1.0885529813", + "1.0794962291", + "1.0821484914", + "1.1132877967", + "1.0549466635", + "1.0402129607", + "1.0218378324", + "1.0501534711", + "1.0216605458", + "1.0768064631", + "1.1077998631", + "1.1304327109", + "1.0871165339", + "1.0584627454", + "1.0787096421", + "1.0584632537", + "1.0448492788", + "1.0095942079", + "1.0445437674", + "0.9756332915", + "0.9928986625", + "1.0757073735", + "1.0640727127", + "1.0611742864", + "1.0713285936", + "1.0796914791", + "1.0690141179", + "1.0809546855", + "1.069421228", + "1.0669597214", + "1.0353705898", + "1.0413654956", + "1.0476234928", + "1.0347779474", + "1.0683165843", + "1.000545796", + "1.0590437363", + "1.0561885037", + "1.0464290362", + "1.0456541598", + "1.0717962846", + "1.0484050478", + "1.0180989098", + "0.9327708104", + "0.9445753552", + "0.9455926311", + "0.8896158539", + "0.9017427744", + "0.8984543724", + "0.8797801733", + "0.888462125", + "0.8844213381", + "0.8744581883", + "0.9002592149", + "0.8969478782", + "0.8603185999", + "0.8788570326", + "0.8366157736", + "0.8392947124", + "0.8532851277", + "0.8547862374", + "0.8414563923", + "0.8309349982", + "0.8576894305", + "0.8436124834", + "0.8036061863", + "0.8109697219", + "0.9805372854", + "0.8008707766", + "0.8054151309", + "0.8090189048", + "0.8049662966", + "0.7720842699", + "0.8018929447", + "0.8219521869", + "0.8239449106", + "0.8220273112", + "0.8053442222", + "0.8041842926", + "0.7699478828", + "0.7722236843", + "0.8981070778", + "0.9093014339", + "0.7955882096", + "0.8012456214", + "0.7913169298", + "0.7554487492", + "0.7810571461", + "0.7717920316", + "0.7639272838", + "0.7630733534", + "0.7705979093", + "0.7645904355", + "0.7836593544", + "0.7775830376", + "0.7893053884", + "0.7840726126", + "0.7708563634", + "0.7589226617", + "0.7685833876", + "0.7644299033", + "0.7703322059", + "0.7623838611", + "0.7378233254", + "0.7472362919", + "0.7410678765", + "0.7690990641", + "0.7667941165", + "0.2209488488", + "0.2347799716", + "0.2474720823", + "0.204224814", + "0.2078487129", + "0.1966355697", + "0.2126859676", + "0.1932358798", + "0.1896591787", + "0.2065762376", + "0.1963772294", + "0.2009360012", + "0.2089890229", + "0.1947741864", + "0.1865989798", + "0.2466899593", + "0.223152186", + "0.223469212", + "0.2241126259", + "0.2186200312", + "0.2087254071", + "0.2689024835", + "0.2398113506", + "0.138875874", + "0.1576908934", + "0.1774566516", + "0.1314191447", + "0.0", + "0.1869611353", + "0.2032663268", + "0.210622727", + "0.193020904", + "0.3476785256", + "0.3538497827", + "0.3575674402", + "0.3928295318", + "0.3468411498", + "0.3725169575", + "0.3094279849", + "0.2923095468", + "0.6116353953", + "0.6226240839", + "0.5566953744", + "0.5579722508", + "0.5161554029", + "0.5325745739", + "0.5309582398", + "0.5546973692", + "0.542121908", + "0.5199190883", + "0.701110094", + "0.7074094296", + "0.6874111242", + "0.6999395701", + "0.6984655724", + "0.6668673626", + "0.6766665021", + "0.7255950521", + "0.7610192152", + "0.7358320359", + "0.7165202337", + "0.6653741585", + "0.6771727592", + "0.676866209", + "0.7076821044", + "0.7080398002", + "0.6407572791", + "0.7785298855", + "0.7831135267", + "0.7928571027", + "0.7726186468", + "0.7343139666", + "0.8037074634", + "0.7846711399", + "0.7895328281", + "0.7263209817", + "0.7580330951", + "0.7666691538", + "0.778326908", + "0.7607623685", + "0.7473980529", + "0.7117650713", + "0.7108506989", + "0.7173173887", + "0.7931556714", + "0.7732721837", + "0.8486550821", + "0.802665529", + "0.7570079523", + "0.7632129892", + "0.7681532786", + "0.7628446199", + "0.7570430189", + "0.7844832879", + "0.7666268241", + "0.7585773305", + "0.7495643635", + "0.7715018405", + "0.7659999957", + "0.7676338877", + "0.7315837966", + "0.733740268", + "0.7068660551", + "0.7901297456", + "0.7658679693", + "0.7512261557", + "0.7314948098", + "0.8672185005", + "0.8704783088", + "0.8983852901", + "0.8530211111", + "0.8571244271", + "0.8711729066", + "0.8848893724", + "0.9085285936", + "0.8497239019", + "0.827737734", + "0.8563439665", + "0.8245946219", + "0.8279084472", + "0.840875694", + "0.8212303291", + "0.8284926733", + "0.8141278204", + "0.8100393915", + "0.8917830242", + "0.8839744898", + "0.8382936803", + "0.859060643", + "0.8557413723", + "0.9089507318", + "0.8363490861", + "0.8205603092", + "0.8381928361", + "0.8390159518", + "0.840445814", + "0.865866784", + "0.8777914334", + "0.9362554536", + "0.9396418478", + "0.9226875253", + "0.907919663", + "0.8886935301", + "0.8578276508", + "1.2191097126", + "1.2435501891", + "1.2073949106", + "1.2180455153", + "1.1952899808", + "1.1815383599", + "1.2718867454", + "1.3007309305", + "1.3018488527", + "1.2261179881", + "1.2236501128", + "1.2237168284", + "1.2175069342", + "1.2355941428", + "1.211611287", + "1.1874634565", + "1.1502603466", + "1.1584033442", + "1.1365847656", + "1.1573164151", + "1.1156008448", + "1.1300883777", + "1.1317408039", + "1.1373566449", + "1.1298638295", + "1.1293984304", + "1.1266592825", + "1.1169616554", + "1.1346688777", + "1.1148152421", + "1.117262393", + "1.1130025586", + "1.1276610056", + "1.1467611077", + "1.090058989", + "1.1124597632", + "1.120497394", + "1.1196394844", + "1.102896139", + "1.0921182995", + "1.0922494572", + "1.0969421048", + "1.1002588786", + "1.1329794906", + "1.1641815791", + "1.1591096012", + "1.0830513307", + "1.0839426157", + "1.079194304", + "1.0852435541", + "1.0062752361", + "0.903231919", + "0.916864432", + "1.1560915337", + "1.3639421595", + "1.1175827226", + "1.1780980081", + "1.1794899571", + "1.1553533497", + "1.1630318529", + "1.1857522439", + "1.175553776", + "1.192962872", + "1.1941169334", + "1.1906796034", + "1.190340645", + "1.2171251173", + "1.1870825996", + "1.1907218781", + "1.1945464596", + "1.1947659934", + "1.158118629", + "1.1629949442", + "1.1840409843", + "1.1644931713", + "1.1718339184", + "1.123745333", + "1.1161934273", + "1.1469060083", + "1.1430817613", + "1.1554308535", + "1.1602884893", + "1.154933135", + "1.1544965648", + "1.1455476936", + "1.1575641138", + "1.1352133725", + "1.1511618911", + "1.1598746302", + "1.1555893483", + "1.1637869147", + "1.1790431362", + "1.1745124837", + "1.1156067797", + "1.1533572899", + "1.1438586865", + "1.1059527578", + "1.3761280853", + "1.4087647431", + "1.3742413038", + "1.3829201573", + "1.3568106135", + "1.1706007736", + "1.0238710017", + "1.0159035764", + "1.0692386875", + "1.0325107728", + "1.0375512639", + "1.0353206658", + "1.0229742451", + "1.0279168462", + "0.9811665617", + "1.0364620378", + "1.0308242865", + "1.0763097094", + "1.0544048876", + "1.0467596514", + "1.0340897774", + "0.9469786421", + "0.9508962582", + "1.0590509834", + "1.0416069871", + "1.0455542996", + "1.0403666486", + "1.0129505158", + "1.1020258808", + "1.0495954469", + "1.0496418218", + "1.1466906917", + "1.1772376545", + "1.1326494682", + "1.1396418396", + "1.1124054948", + "1.117793293", + "1.1169604151", + "1.1091270995", + "1.0517477176", + "1.2003614699", + "1.2545264374", + "1.2215493607", + "1.2107477598", + "1.2180536744", + "1.1586488358", + "1.1712496667", + "1.1783072797", + "1.1735452474", + "1.2229082889", + "1.2288951611", + "1.2382940102", + "1.2503853904", + "1.1855614304", + "1.2273501515", + "1.2254817352", + "1.151896173", + "1.150023902", + "1.1782196757", + "1.1713230448", + "1.2231417961", + "1.1268176849", + "1.0721470265", + "1.0899607574", + "1.0527053616", + "1.0851050891", + "1.1683358499", + "1.1815782061", + "1.1964944335", + "1.2117308407", + "1.1254994362", + "1.0578884853", + "1.1182712032", + "1.1909754975", + "1.0368099923", + "1.0656685944", + "1.071790843", + "1.1285802149", + "1.081910333", + "1.0884239788", + "1.0932063248", + "1.0744549641", + "1.100701511", + "1.167979213", + "1.1745333772", + "1.2023188922", + "1.2153218824", + "1.2119421824", + "1.090579102", + "1.1176234091", + "1.0809124536", + "1.0863296721", + "1.138314284", + "1.1706275053", + "1.1625628837", + "1.1709783471", + "1.1580730044", + "1.1451799184", + "1.1497264064", + "1.2033516983", + "1.2587375197", + "1.3554948409", + "1.2686192588", + "1.2679889539", + "1.2958147056", + "1.2332023459", + "1.3000484652", + "1.2950945387", + "1.260069438", + "1.2693329037", + "1.1646190226", + "1.4561760879", + "1.3823307792", + "1.3915197996", + "1.3190294273", + "1.3313202689", + "1.3209351694", + "1.4231387785", + "1.3503704163", + "1.3885580312", + "1.3826409054", + "1.3605253874", + "1.2897526009", + "1.2924974444", + "1.3371559945", + "1.3309167529", + "1.3355055535", + "1.3009039657", + "1.2924849412", + "1.2844480998", + "1.3440972213", + "1.3029258654", + "1.3105945678", + "1.2811153966", + "1.2338623163", + "1.3374249686", + "1.2755090797", + "1.268642435", + "1.2888706669", + "1.3650149245", + "1.3772864831", + "1.3858753463", + "1.3809875777", + "1.3747828513", + "1.3646230565", + "1.3636411677", + "1.3569880858", + "1.4751829633", + "1.4560662384", + "1.3300013583", + "1.3792867013", + "1.3792140194", + "1.372854791", + "1.3753675615", + "1.4414500616", + "1.4360000392", + "1.3908784998", + "1.3768431562", + "1.3741902541", + "1.3626941701", + "1.3814275638", + "1.3499039396", + "1.3408597893", + "1.3366982294", + "1.3522589233", + "1.3477292342", + "1.3386272865", + "1.3451972009", + "1.3598725147", + "1.3746230872", + "1.383557454", + "1.4100221417", + "1.3615527492", + "1.3855645169", + "1.3964895405", + "1.3401778951", + "1.3944976342", + "1.3694297819", + "1.3453671928", + "1.344868422", + "1.3525617391", + "1.3465266294", + "1.3196587063", + "1.3276037644", + "1.3307459738", + "1.3020262583" + ] + }, + "essential_compounds": [ + "12dgr180", + "26dap_M", + "34dhphe", + "4abz", + "4hbz", + "5htrp", + "C02528", + "ac", + "acald", + "acgam", + "actn_R", + "adn", + "adocbl", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_L", + "arbt", + "arg_L", + "arsenb", + "asn_L", + "asp_L", + "btn", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "cholate", + "cl", + "co2", + "cobalt2", + "cro4", + "ctbt", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dgchol", + "dgsn", + "din", + "dopa", + "drib", + "duri", + "etoh", + "fe2", + "fe3", + "fol", + "for", + "fru", + "gal", + "galt", + "gam", + "gbbtn", + "gcald", + "gchola", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gua", + "h2o", + "h", + "hg2", + "his_L", + "hista", + "hxan", + "ile_L", + "ins", + "inulin", + "k", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man", + "melib", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mqn8", + "na1", + "nac", + "nh4", + "no2", + "o2", + "pb", + "phe_L", + "pheme", + "pi", + "ppa", + "ppi", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "pyr", + "q8", + "raffin", + "rib_D", + "ribflv", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "sheme", + "so4", + "spmd", + "srtn", + "succ", + "sucr", + "taur", + "tchola", + "tdchola", + "thm", + "thr_L", + "thymd", + "tre", + "trp_L", + "trypta", + "tym", + "tyr_L", + "ura", + "uri", + "val_L", + "xan", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_420.json b/agents/agora/agent_420.json new file mode 100644 index 0000000000000000000000000000000000000000..bf56ad519a12803e8433b3b6de70edacefdea66c --- /dev/null +++ b/agents/agora/agent_420.json @@ -0,0 +1,986 @@ +{ + "id": 420, + "name": "Fusobacterium_nucleatum_subsp_vincentii_3_1_36A2", + "N_R": 969, + "taxonomy": { + "k": 420, + "tax_distance": [ + "2.4583870965", + "2.0405092292", + "2.0338100001", + "2.2603927072", + "1.9417926333", + "1.9869213202", + "1.9682160224", + "1.9652734281", + "2.0292550264", + "1.9476109345", + "1.9646756379", + "2.0727979517", + "2.04581573", + "2.2738296879", + "2.322186505", + "2.3525190156", + "2.2328686177", + "2.2417927345", + "2.2772672101", + "1.8102515261", + "1.7455805494", + "1.4950592907", + "1.4284088583", + "1.3069291816", + "1.1327499028", + "1.1269386947", + "1.1235841233", + "1.1259451777", + "1.1101788877", + "1.1014931248", + "1.1039440309", + "1.205529967", + "1.2150677698", + "1.2114338598", + "1.2271299284", + "1.1956283484", + "1.2183742925", + "1.236680204", + "1.217648241", + "1.5105889", + "1.2554305213", + "1.1740694653", + "1.1808347715", + "1.1834423516", + "1.1802106096", + "1.1831839913", + "1.1782853864", + "1.1786704217", + "1.1728555109", + "1.1648943213", + "1.1064721433", + "1.1119845433", + "1.10624371", + "1.0783974394", + "1.0849191835", + "1.1140211807", + "1.0879442939", + "1.0859282663", + "1.1066826719", + "1.1043427772", + "1.0876009497", + "1.1129517213", + "1.1150265111", + "1.1136956179", + "1.1280868354", + "1.1298089973", + "1.1298089973", + "1.13645458", + "1.13645458", + "1.13645458", + "1.13645458", + "1.13645458", + "1.13645458", + "1.13645458", + "1.13645458", + "1.1323752173", + "1.1327209545", + "1.1262892469", + "1.1367817215", + "1.1358764796", + "1.13197831", + "1.1302356364", + "1.1315542062", + "1.1280523257", + "1.1229745774", + "1.126319703", + "1.1317654698", + "1.1272272781", + "1.112227322", + "1.1205984369", + "1.1153230517", + "1.1314709927", + "1.1267737035", + "1.1309072728", + "1.1088675622", + "1.1034673784", + "1.1175337335", + "1.1281941425", + "1.1449911855", + "1.1274008953", + "1.1174057768", + "1.1160879592", + "1.0968375793", + "1.1097160683", + "1.1685885133", + "1.1634366016", + "1.2303328589", + "1.1964936029", + "1.1336849621", + "1.1374112189", + "1.140144686", + "1.1330406045", + "1.1330406045", + "1.1144167023", + "1.1173208486", + "1.1092203319", + "1.1447460306", + "1.0815234811", + "1.0594325677", + "1.077296924", + "1.0640259287", + "1.0644515211", + "1.1827032347", + "1.1898936855", + "1.2113346984", + "1.0159309827", + "1.185679936", + "1.1923551701", + "1.1769920778", + "1.196626083", + "1.185813169", + "1.1908796553", + "1.1823833777", + "1.1754332726", + "1.1663035755", + "1.1669616959", + "1.1858756191", + "1.1589941752", + "1.1410299647", + "1.2349179056", + "1.2362917793", + "1.205603367", + "1.2631830576", + "1.2007616451", + "1.2062555879", + "1.2032945628", + "1.2280015479", + "1.2171790991", + "1.1253360271", + "1.0964259376", + "1.0576148776", + "1.0355135844", + "1.0268717781", + "1.021751587", + "1.0586232127", + "1.0611183386", + "1.0329302697", + "1.0212923158", + "1.0248788248", + "1.0938319356", + "1.1005403177", + "1.0701693711", + "1.1940874443", + "1.1885725489", + "1.1909136001", + "1.1486366739", + "1.1447826944", + "1.1826892681", + "1.1745124538", + "1.1432704313", + "1.14482979", + "1.1628497837", + "1.119544989", + "1.10870886", + "1.1098694125", + "1.1433557539", + "1.1315322012", + "1.112905344", + "1.1318939663", + "1.1132259676", + "1.1270409098", + "1.1212583388", + "1.1201899568", + "1.1407484085", + "1.1365358611", + "1.1194168157", + "1.1536451897", + "1.138410948", + "1.143523257", + "1.1429165715", + "1.1073149411", + "1.1032947329", + "1.0878273813", + "1.1061738865", + "1.1031075117", + "1.0774159179", + "1.06040317", + "1.0550955191", + "1.0598373037", + "1.058978693", + "1.0917446529", + "1.0907639911", + "1.1148037887", + "1.0926947617", + "1.0531867697", + "1.0563511805", + "1.0814130725", + "1.0777041884", + "1.0534535717", + "1.0459962218", + "1.0483494811", + "1.057527016", + "0.9832929191", + "1.0258960199", + "1.0101922492", + "1.004030486", + "0.9977502412", + "0.9856476236", + "0.988817963", + "1.0309900524", + "1.4653818836", + "1.5501600827", + "1.4626955076", + "1.4478777955", + "1.4262051627", + "0.9798828216", + "0.9986872276", + "1.0486200927", + "1.0102593407", + "1.0254965437", + "1.1390336813", + "1.0928042884", + "1.1144559626", + "1.0731226165", + "0.986460928", + "0.9988432709", + "1.0053343421", + "1.0657608789", + "1.0569613463", + "1.0550426153", + "1.0810448964", + "1.0783524608", + "1.0695844052", + "1.1011050288", + "1.1091884933", + "1.0933772201", + "1.0667589703", + "1.0614133972", + "1.0668240731", + "1.0555309319", + "1.0005000371", + "1.005584859", + "1.0048296355", + "1.05164122", + "1.0070709406", + "0.9895227422", + "1.0669475484", + "1.0202149086", + "0.9952974461", + "1.0083329373", + "0.9789484237", + "0.9441620655", + "1.0282501013", + "1.0306038877", + "1.0353810974", + "1.0407266954", + "1.0064256696", + "1.0670814189", + "1.0739175343", + "1.0704285318", + "1.0830935972", + "1.0691775544", + "1.0489616482", + "1.0403608795", + "1.0870127477", + "1.1062910204", + "1.1569700403", + "0.9998924241", + "0.96906513", + "1.0620708439", + "1.061054144", + "1.0482750683", + "1.0051997812", + "1.0700230954", + "1.0609663432", + "1.0636186055", + "1.0947579108", + "1.0364167776", + "1.0216830748", + "1.0033079465", + "1.0316235852", + "1.0031306599", + "1.0582765772", + "1.0892699772", + "1.111902825", + "1.068586648", + "1.0399328595", + "1.0601797562", + "1.0399333678", + "1.0263193929", + "0.991064322", + "1.0260138815", + "0.9571034056", + "0.9743687766", + "1.0571774876", + "1.0455428268", + "1.0426444005", + "1.0527987077", + "1.0611615932", + "1.050484232", + "1.0624247996", + "1.0508913421", + "1.0484298355", + "1.0168407039", + "1.0228356097", + "1.0290936069", + "1.0162480615", + "1.0497866984", + "0.9820159101", + "1.0405138504", + "1.0376586178", + "1.0278991503", + "1.0271242739", + "1.0532663987", + "1.0298751619", + "0.9995690239", + "0.9142409245", + "0.9260454693", + "0.9270627452", + "0.871085968", + "0.8832128885", + "0.8799244865", + "0.8612502874", + "0.8699322391", + "0.8658914522", + "0.8559283024", + "0.881729329", + "0.8784179923", + "0.841788714", + "0.8603271467", + "0.8180858877", + "0.8207648265", + "0.8347552418", + "0.8362563515", + "0.8229265064", + "0.8124051123", + "0.8391595446", + "0.8250825975", + "0.7850763004", + "0.792439836", + "0.9620073995", + "0.7823408907", + "0.786885245", + "0.7904890189", + "0.7864364107", + "0.753554384", + "0.7833630588", + "0.803422301", + "0.8054150247", + "0.8034974253", + "0.7868143363", + "0.7856544067", + "0.7514179969", + "0.7536937984", + "0.8795771919", + "0.890771548", + "0.7770583237", + "0.7827157355", + "0.7727870439", + "0.7369188633", + "0.7625272602", + "0.7532621457", + "0.7453973979", + "0.7445434675", + "0.7520680234", + "0.7460605496", + "0.7651294685", + "0.7590531517", + "0.7707755025", + "0.7655427267", + "0.7523264775", + "0.7403927758", + "0.7500535017", + "0.7459000174", + "0.75180232", + "0.7438539752", + "0.7192934395", + "0.728706406", + "0.7225379906", + "0.7505691782", + "0.7482642306", + "0.2024189629", + "0.2162500857", + "0.2289421964", + "0.2327379901", + "0.236361889", + "0.2251487458", + "0.2411991437", + "0.2217490559", + "0.2181723548", + "0.2350894137", + "0.2248904055", + "0.2294491773", + "0.237502199", + "0.2232873625", + "0.2151121559", + "0.2752031354", + "0.2516653621", + "0.2519823881", + "0.252625802", + "0.2471332073", + "0.2372385832", + "0.2974156596", + "0.2683245267", + "0.1905672927", + "0.2093823121", + "0.2291480703", + "0.2052577606", + "0.1869611353", + "0.0", + "0.1145083499", + "0.1218647501", + "0.1288261233", + "0.3291486397", + "0.3353198968", + "0.3390375543", + "0.3742996459", + "0.3283112639", + "0.3539870716", + "0.290898099", + "0.2737796609", + "0.5931055094", + "0.604094198", + "0.5381654885", + "0.5394423649", + "0.497625517", + "0.514044688", + "0.5124283539", + "0.5361674833", + "0.5235920221", + "0.5013892024", + "0.6825802081", + "0.6888795437", + "0.6688812383", + "0.6814096842", + "0.6799356865", + "0.6483374767", + "0.6581366162", + "0.7070651662", + "0.7424893293", + "0.71730215", + "0.6979903478", + "0.6468442726", + "0.6586428733", + "0.6583363231", + "0.6891522185", + "0.6895099143", + "0.6222273932", + "0.7599999996", + "0.7645836408", + "0.7743272168", + "0.7540887609", + "0.7157840807", + "0.7851775775", + "0.766141254", + "0.7710029422", + "0.7077910958", + "0.7395032092", + "0.7481392679", + "0.7597970221", + "0.7422324826", + "0.728868167", + "0.6932351854", + "0.692320813", + "0.6987875028", + "0.7746257855", + "0.7547422978", + "0.8301251962", + "0.7841356431", + "0.7384780664", + "0.7446831033", + "0.7496233927", + "0.744314734", + "0.738513133", + "0.765953402", + "0.7480969382", + "0.7400474446", + "0.7310344776", + "0.7529719546", + "0.7474701098", + "0.7491040018", + "0.7130539107", + "0.7152103821", + "0.6883361692", + "0.7715998597", + "0.7473380834", + "0.7326962698", + "0.7129649239", + "0.8486886146", + "0.8519484229", + "0.8798554042", + "0.8344912252", + "0.8385945412", + "0.8526430207", + "0.8663594865", + "0.8899987077", + "0.831194016", + "0.8092078481", + "0.8378140806", + "0.806064736", + "0.8093785613", + "0.8223458081", + "0.8027004432", + "0.8099627874", + "0.7955979345", + "0.7915095056", + "0.8732531383", + "0.8654446039", + "0.8197637944", + "0.8405307571", + "0.8372114864", + "0.8904208459", + "0.8178192002", + "0.8020304233", + "0.8196629502", + "0.8204860659", + "0.8219159281", + "0.8473368981", + "0.8592615475", + "0.9177255677", + "0.9211119619", + "0.9041576394", + "0.8893897771", + "0.8701636442", + "0.8392977649", + "1.2005798267", + "1.2250203032", + "1.1888650247", + "1.1995156294", + "1.1767600949", + "1.163008474", + "1.2533568595", + "1.2822010446", + "1.2833189668", + "1.2075881022", + "1.2051202269", + "1.2051869425", + "1.1989770483", + "1.2170642569", + "1.1930814011", + "1.1689335706", + "1.1317304607", + "1.1398734583", + "1.1180548797", + "1.1387865292", + "1.0970709589", + "1.1115584918", + "1.113210918", + "1.118826759", + "1.1113339436", + "1.1108685445", + "1.1081293966", + "1.0984317695", + "1.1161389918", + "1.0962853562", + "1.0987325071", + "1.0944726727", + "1.1091311197", + "1.1282312218", + "1.0715291031", + "1.0939298773", + "1.1019675081", + "1.1011095985", + "1.0843662531", + "1.0735884136", + "1.0737195713", + "1.0784122189", + "1.0817289927", + "1.1144496047", + "1.1456516932", + "1.1405797153", + "1.0645214448", + "1.0654127298", + "1.0606644181", + "1.0667136682", + "0.9877453502", + "0.8847020331", + "0.8983345461", + "1.1375616478", + "1.3454122736", + "1.0990528367", + "1.1595681222", + "1.1609600712", + "1.1368234638", + "1.144501967", + "1.167222358", + "1.1570238901", + "1.1744329861", + "1.1755870475", + "1.1721497175", + "1.1718107591", + "1.1985952314", + "1.1685527137", + "1.1721919922", + "1.1760165737", + "1.1762361075", + "1.1395887431", + "1.1444650583", + "1.1655110984", + "1.1459632854", + "1.1533040325", + "1.1052154471", + "1.0976635414", + "1.1283761224", + "1.1245518754", + "1.1369009676", + "1.1417586034", + "1.1364032491", + "1.1359666789", + "1.1270178077", + "1.1390342279", + "1.1166834866", + "1.1326320052", + "1.1413447443", + "1.1370594624", + "1.1452570288", + "1.1605132503", + "1.1559825978", + "1.0970768938", + "1.134827404", + "1.1253288006", + "1.0874228719", + "1.3575981994", + "1.3902348572", + "1.3557114179", + "1.3643902714", + "1.3382807276", + "1.1520708877", + "1.0053411158", + "0.9973736905", + "1.0507088016", + "1.0139808869", + "1.019021378", + "1.0167907799", + "1.0044443592", + "1.0093869603", + "0.9626366758", + "1.0179321519", + "1.0122944006", + "1.0577798235", + "1.0358750017", + "1.0282297655", + "1.0155598915", + "0.9284487562", + "0.9323663723", + "1.0405210975", + "1.0230771012", + "1.0270244137", + "1.0218367627", + "0.9944206299", + "1.0834959949", + "1.031065561", + "1.0311119359", + "1.1281608058", + "1.1587077686", + "1.1141195823", + "1.1211119537", + "1.0938756089", + "1.0992634071", + "1.0984305292", + "1.0905972136", + "1.0332178317", + "1.181831584", + "1.2359965515", + "1.2030194748", + "1.1922178739", + "1.1995237885", + "1.1401189499", + "1.1527197808", + "1.1597773938", + "1.1550153615", + "1.204378403", + "1.2103652752", + "1.2197641243", + "1.2318555045", + "1.1670315445", + "1.2088202656", + "1.2069518493", + "1.1333662871", + "1.1314940161", + "1.1596897898", + "1.1527931589", + "1.2046119102", + "1.108287799", + "1.0536171406", + "1.0714308715", + "1.0341754757", + "1.0665752032", + "1.149805964", + "1.1630483202", + "1.1779645476", + "1.1932009548", + "1.1069695503", + "1.0393585994", + "1.0997413173", + "1.1724456116", + "1.0182801064", + "1.0471387085", + "1.0532609571", + "1.110050329", + "1.0633804471", + "1.0698940929", + "1.0746764389", + "1.0559250782", + "1.0821716251", + "1.1494493271", + "1.1560034913", + "1.1837890063", + "1.1967919965", + "1.1934122965", + "1.0720492161", + "1.0990935232", + "1.0623825677", + "1.0677997862", + "1.1197843981", + "1.1520976194", + "1.1440329978", + "1.1524484612", + "1.1395431185", + "1.1266500325", + "1.1311965205", + "1.1848218124", + "1.2402076338", + "1.336964955", + "1.2500893729", + "1.249459068", + "1.2772848197", + "1.21467246", + "1.2815185793", + "1.2765646528", + "1.2415395521", + "1.2508030178", + "1.1460891367", + "1.437646202", + "1.3638008933", + "1.3729899137", + "1.3004995414", + "1.312790383", + "1.3024052835", + "1.4046088926", + "1.3318405304", + "1.3700281453", + "1.3641110195", + "1.3419955015", + "1.271222715", + "1.2739675585", + "1.3186261086", + "1.312386867", + "1.3169756676", + "1.2823740798", + "1.2739550553", + "1.2659182139", + "1.3255673354", + "1.2843959795", + "1.2920646819", + "1.2625855107", + "1.2153324304", + "1.3188950827", + "1.2569791938", + "1.2501125491", + "1.270340781", + "1.3464850386", + "1.3587565972", + "1.3673454604", + "1.3624576918", + "1.3562529654", + "1.3460931706", + "1.3451112818", + "1.3384581999", + "1.4566530774", + "1.4375363525", + "1.3114714724", + "1.3607568154", + "1.3606841335", + "1.3543249051", + "1.3568376756", + "1.4229201757", + "1.4174701533", + "1.3723486139", + "1.3583132703", + "1.3556603682", + "1.3441642842", + "1.3628976779", + "1.3313740537", + "1.3223299034", + "1.3181683435", + "1.3337290374", + "1.3291993483", + "1.3200974006", + "1.326667315", + "1.3413426288", + "1.3560932013", + "1.3650275681", + "1.3914922558", + "1.3430228633", + "1.367034631", + "1.3779596546", + "1.3216480092", + "1.3759677483", + "1.350899896", + "1.3268373069", + "1.3263385361", + "1.3340318532", + "1.3279967435", + "1.3011288204", + "1.3090738785", + "1.3122160879", + "1.2834963724" + ] + }, + "essential_compounds": [ + "26dap_M", + "2dmmq8", + "2obut", + "3mop", + "4hbz", + "C02528", + "ac", + "acald", + "acgam", + "actn_R", + "ade", + "adn", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_L", + "arbt", + "arg_L", + "arsenb", + "asn_L", + "asp_L", + "btn", + "ca2", + "cd2", + "cellb", + "cgly", + "chol", + "cholate", + "chols", + "chtbs", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dextrin", + "dgchol", + "dgsn", + "din", + "drib", + "duri", + "etoh", + "fe2", + "fe3", + "fecrm", + "fol", + "for", + "fru", + "gal", + "galctn_D", + "galt", + "gam", + "gbbtn", + "gcald", + "gchola", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gua", + "h2o", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "ins", + "k", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man", + "mantr", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mqn8", + "n2o", + "na1", + "nac", + "nh4", + "no2", + "no", + "o2", + "ocdcea", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "pnto_R", + "ppa", + "pro_L", + "ptrc", + "q8", + "rib_D", + "ribflv", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "sheme", + "so4", + "spmd", + "stys", + "succ", + "sucr", + "taur", + "tchola", + "tdchola", + "thm", + "thr_L", + "thymd", + "tre", + "tyr_L", + "ura", + "uri", + "val_L", + "xan", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_421.json b/agents/agora/agent_421.json new file mode 100644 index 0000000000000000000000000000000000000000..0decadef42cb66627e19b73ad9fe05d2b2f4f976 --- /dev/null +++ b/agents/agora/agent_421.json @@ -0,0 +1,973 @@ +{ + "id": 421, + "name": "Fusobacterium_nucleatum_subsp_vincentii_4_1_13", + "N_R": 988, + "taxonomy": { + "k": 421, + "tax_distance": [ + "2.474692288", + "2.0568144207", + "2.0501151916", + "2.2766978987", + "1.9580978248", + "2.0032265117", + "1.9845212139", + "1.9815786196", + "2.0455602179", + "1.963916126", + "1.9809808294", + "2.0891031432", + "2.0621209215", + "2.2901348794", + "2.3384916965", + "2.3688242071", + "2.2491738092", + "2.258097926", + "2.2935724016", + "1.8265567176", + "1.7618857409", + "1.5113644822", + "1.4447140498", + "1.3232343731", + "1.1490550943", + "1.1432438862", + "1.1398893148", + "1.1422503692", + "1.1264840792", + "1.1177983163", + "1.1202492224", + "1.2218351585", + "1.2313729613", + "1.2277390513", + "1.2434351199", + "1.2119335399", + "1.234679484", + "1.2529853955", + "1.2339534325", + "1.5268940915", + "1.2717357128", + "1.1903746568", + "1.197139963", + "1.1997475431", + "1.1965158011", + "1.1994891828", + "1.1945905779", + "1.1949756132", + "1.1891607024", + "1.1811995128", + "1.1227773348", + "1.1282897348", + "1.1225489015", + "1.0947026309", + "1.101224375", + "1.1303263722", + "1.1042494854", + "1.1022334578", + "1.1229878634", + "1.1206479687", + "1.1039061412", + "1.1292569128", + "1.1313317026", + "1.1300008094", + "1.1443920269", + "1.1461141888", + "1.1461141888", + "1.1527597715", + "1.1527597715", + "1.1527597715", + "1.1527597715", + "1.1527597715", + "1.1527597715", + "1.1527597715", + "1.1527597715", + "1.1486804088", + "1.149026146", + "1.1425944384", + "1.153086913", + "1.1521816711", + "1.1482835015", + "1.1465408279", + "1.1478593977", + "1.1443575172", + "1.1392797689", + "1.1426248945", + "1.1480706613", + "1.1435324696", + "1.1285325135", + "1.1369036284", + "1.1316282432", + "1.1477761842", + "1.143078895", + "1.1472124643", + "1.1251727537", + "1.1197725699", + "1.133838925", + "1.144499334", + "1.161296377", + "1.1437060868", + "1.1337109683", + "1.1323931507", + "1.1131427708", + "1.1260212598", + "1.1848937048", + "1.1797417931", + "1.2466380504", + "1.2127987944", + "1.1499901536", + "1.1537164104", + "1.1564498775", + "1.149345796", + "1.149345796", + "1.1307218938", + "1.1336260401", + "1.1255255234", + "1.1610512221", + "1.0978286726", + "1.0757377592", + "1.0936021155", + "1.0803311202", + "1.0807567126", + "1.1990084262", + "1.206198877", + "1.2276398899", + "1.0322361742", + "1.2019851275", + "1.2086603616", + "1.1932972693", + "1.2129312745", + "1.2021183605", + "1.2071848468", + "1.1986885692", + "1.1917384641", + "1.182608767", + "1.1832668874", + "1.2021808106", + "1.1752993667", + "1.1573351562", + "1.2512230971", + "1.2525969708", + "1.2219085585", + "1.2794882491", + "1.2170668366", + "1.2225607794", + "1.2195997543", + "1.2443067394", + "1.2334842906", + "1.1416412186", + "1.1127311291", + "1.0739200691", + "1.0518187759", + "1.0431769696", + "1.0380567785", + "1.0749284042", + "1.0774235301", + "1.0492354612", + "1.0375975073", + "1.0411840163", + "1.1101371271", + "1.1168455092", + "1.0864745626", + "1.2103926358", + "1.2048777404", + "1.2072187916", + "1.1649418654", + "1.1610878859", + "1.1989944596", + "1.1908176453", + "1.1595756228", + "1.1611349815", + "1.1791549752", + "1.1358501805", + "1.1250140515", + "1.126174604", + "1.1596609454", + "1.1478373927", + "1.1292105355", + "1.1481991578", + "1.1295311591", + "1.1433461013", + "1.1375635303", + "1.1364951483", + "1.1570536", + "1.1528410526", + "1.1357220072", + "1.1699503812", + "1.1547161395", + "1.1598284485", + "1.159221763", + "1.1236201326", + "1.1195999244", + "1.1041325728", + "1.122479078", + "1.1194127032", + "1.0937211094", + "1.0767083615", + "1.0714007106", + "1.0761424952", + "1.0752838845", + "1.1080498444", + "1.1070691826", + "1.1311089802", + "1.1089999532", + "1.0694919612", + "1.072656372", + "1.097718264", + "1.0940093799", + "1.0697587632", + "1.0623014133", + "1.0646546726", + "1.0738322075", + "0.9995981106", + "1.0422012114", + "1.0264974407", + "1.0203356775", + "1.0140554327", + "1.0019528151", + "1.0051231545", + "1.0472952439", + "1.4816870751", + "1.5664652742", + "1.4790006991", + "1.464182987", + "1.4425103542", + "0.9961880131", + "1.0149924191", + "1.0649252842", + "1.0265645322", + "1.0418017352", + "1.1553388728", + "1.1091094799", + "1.1307611541", + "1.089427808", + "1.0027661195", + "1.0151484624", + "1.0216395336", + "1.0820660704", + "1.0732665378", + "1.0713478068", + "1.0973500879", + "1.0946576523", + "1.0858895967", + "1.1174102203", + "1.1254936848", + "1.1096824116", + "1.0830641618", + "1.0777185887", + "1.0831292646", + "1.0718361234", + "1.0168052286", + "1.0218900505", + "1.021134827", + "1.0679464115", + "1.0233761321", + "1.0058279337", + "1.0832527399", + "1.0365201001", + "1.0116026376", + "1.0246381288", + "0.9952536152", + "0.960467257", + "1.0445552928", + "1.0469090792", + "1.0516862889", + "1.0570318869", + "1.0227308611", + "1.0833866104", + "1.0902227258", + "1.0867337233", + "1.0993987887", + "1.0854827459", + "1.0652668397", + "1.056666071", + "1.1033179392", + "1.1225962119", + "1.1732752318", + "1.0161976156", + "0.9853703215", + "1.0783760354", + "1.0773593355", + "1.0645802598", + "1.0215049727", + "1.0863282869", + "1.0772715347", + "1.079923797", + "1.1110631023", + "1.0527219691", + "1.0379882663", + "1.019613138", + "1.0479287767", + "1.0194358514", + "1.0745817687", + "1.1055751687", + "1.1282080165", + "1.0848918395", + "1.056238051", + "1.0764849477", + "1.0562385593", + "1.0426245844", + "1.0073695135", + "1.042319073", + "0.9734085971", + "0.9906739681", + "1.0734826791", + "1.0618480183", + "1.058949592", + "1.0691038992", + "1.0774667847", + "1.0667894235", + "1.0787299911", + "1.0671965336", + "1.064735027", + "1.0331458954", + "1.0391408012", + "1.0453987984", + "1.032553253", + "1.0660918899", + "0.9983211016", + "1.0568190419", + "1.0539638093", + "1.0442043418", + "1.0434294654", + "1.0695715902", + "1.0461803534", + "1.0158742154", + "0.930546116", + "0.9423506608", + "0.9433679367", + "0.8873911595", + "0.89951808", + "0.896229678", + "0.8775554789", + "0.8862374306", + "0.8821966437", + "0.8722334939", + "0.8980345205", + "0.8947231838", + "0.8580939055", + "0.8766323382", + "0.8343910792", + "0.837070018", + "0.8510604333", + "0.852561543", + "0.8392316979", + "0.8287103038", + "0.8554647361", + "0.841387789", + "0.8013814919", + "0.8087450275", + "0.978312591", + "0.7986460822", + "0.8031904365", + "0.8067942104", + "0.8027416022", + "0.7698595755", + "0.7996682503", + "0.8197274925", + "0.8217202162", + "0.8198026168", + "0.8031195278", + "0.8019595982", + "0.7677231884", + "0.7699989899", + "0.8958823834", + "0.9070767395", + "0.7933635152", + "0.799020927", + "0.7890922354", + "0.7532240548", + "0.7788324517", + "0.7695673372", + "0.7617025894", + "0.760848659", + "0.7683732149", + "0.7623657411", + "0.78143466", + "0.7753583432", + "0.787080694", + "0.7818479182", + "0.768631669", + "0.7566979673", + "0.7663586932", + "0.7622052089", + "0.7681075115", + "0.7601591667", + "0.735598631", + "0.7450115975", + "0.7388431821", + "0.7668743697", + "0.7645694221", + "0.2187241544", + "0.2325552772", + "0.2452473879", + "0.2490431816", + "0.2526670805", + "0.2414539373", + "0.2575043352", + "0.2380542474", + "0.2344775463", + "0.2513946052", + "0.241195597", + "0.2457543688", + "0.2538073905", + "0.239592554", + "0.2314173474", + "0.2915083269", + "0.2679705536", + "0.2682875796", + "0.2689309935", + "0.2634383988", + "0.2535437747", + "0.3137208511", + "0.2846297182", + "0.2068724842", + "0.2256875036", + "0.2454532618", + "0.2215629521", + "0.2032663268", + "0.1145083499", + "0.0", + "0.1131988164", + "0.1451313148", + "0.3454538312", + "0.3516250883", + "0.3553427458", + "0.3906048374", + "0.3446164554", + "0.3702922631", + "0.3072032905", + "0.2900848524", + "0.6094107009", + "0.6203993895", + "0.55447068", + "0.5557475564", + "0.5139307085", + "0.5303498795", + "0.5287335454", + "0.5524726748", + "0.5398972136", + "0.5176943939", + "0.6988853996", + "0.7051847352", + "0.6851864298", + "0.6977148757", + "0.696240878", + "0.6646426682", + "0.6744418077", + "0.7233703577", + "0.7587945208", + "0.7336073415", + "0.7142955393", + "0.6631494641", + "0.6749480648", + "0.6746415146", + "0.70545741", + "0.7058151058", + "0.6385325847", + "0.7763051911", + "0.7808888323", + "0.7906324083", + "0.7703939524", + "0.7320892722", + "0.801482769", + "0.7824464455", + "0.7873081337", + "0.7240962873", + "0.7558084007", + "0.7644444594", + "0.7761022136", + "0.7585376741", + "0.7451733585", + "0.7095403769", + "0.7086260045", + "0.7150926943", + "0.790930977", + "0.7710474893", + "0.8464303877", + "0.8004408346", + "0.7547832579", + "0.7609882948", + "0.7659285842", + "0.7606199255", + "0.7548183245", + "0.7822585935", + "0.7644021297", + "0.7563526361", + "0.7473396691", + "0.7692771461", + "0.7637753013", + "0.7654091933", + "0.7293591022", + "0.7315155736", + "0.7046413607", + "0.7879050512", + "0.7636432749", + "0.7490014613", + "0.7292701154", + "0.8649938061", + "0.8682536144", + "0.8961605957", + "0.8507964167", + "0.8548997327", + "0.8689482122", + "0.882664678", + "0.9063038992", + "0.8474992075", + "0.8255130396", + "0.8541192721", + "0.8223699275", + "0.8256837528", + "0.8386509996", + "0.8190056347", + "0.8262679789", + "0.811903126", + "0.8078146971", + "0.8895583298", + "0.8817497954", + "0.8360689859", + "0.8568359486", + "0.8535166779", + "0.9067260374", + "0.8341243917", + "0.8183356148", + "0.8359681417", + "0.8367912574", + "0.8382211196", + "0.8636420896", + "0.875566739", + "0.9340307592", + "0.9374171534", + "0.9204628309", + "0.9056949686", + "0.8864688357", + "0.8556029564", + "1.2168850182", + "1.2413254947", + "1.2051702162", + "1.2158208209", + "1.1930652864", + "1.1793136655", + "1.269662051", + "1.2985062361", + "1.2996241583", + "1.2238932937", + "1.2214254184", + "1.221492134", + "1.2152822398", + "1.2333694484", + "1.2093865926", + "1.1852387621", + "1.1480356522", + "1.1561786498", + "1.1343600712", + "1.1550917207", + "1.1133761504", + "1.1278636833", + "1.1295161095", + "1.1351319505", + "1.1276391351", + "1.127173736", + "1.1244345881", + "1.114736961", + "1.1324441833", + "1.1125905477", + "1.1150376986", + "1.1107778642", + "1.1254363112", + "1.1445364133", + "1.0878342946", + "1.1102350688", + "1.1182726996", + "1.11741479", + "1.1006714446", + "1.0898936051", + "1.0900247628", + "1.0947174104", + "1.0980341842", + "1.1307547962", + "1.1619568847", + "1.1568849068", + "1.0808266363", + "1.0817179213", + "1.0769696096", + "1.0830188597", + "1.0040505417", + "0.9010072246", + "0.9146397376", + "1.1538668393", + "1.3617174651", + "1.1153580282", + "1.1758733137", + "1.1772652627", + "1.1531286553", + "1.1608071585", + "1.1835275495", + "1.1733290816", + "1.1907381776", + "1.191892239", + "1.188454909", + "1.1881159506", + "1.2149004229", + "1.1848579052", + "1.1884971837", + "1.1923217652", + "1.192541299", + "1.1558939346", + "1.1607702498", + "1.1818162899", + "1.1622684769", + "1.169609224", + "1.1215206386", + "1.1139687329", + "1.1446813139", + "1.1408570669", + "1.1532061591", + "1.1580637949", + "1.1527084406", + "1.1522718704", + "1.1433229992", + "1.1553394194", + "1.1329886781", + "1.1489371967", + "1.1576499358", + "1.1533646539", + "1.1615622203", + "1.1768184418", + "1.1722877893", + "1.1133820853", + "1.1511325955", + "1.1416339921", + "1.1037280634", + "1.3739033909", + "1.4065400487", + "1.3720166094", + "1.3806954629", + "1.3545859191", + "1.1683760792", + "1.0216463073", + "1.013678882", + "1.0670139931", + "1.0302860784", + "1.0353265695", + "1.0330959714", + "1.0207495507", + "1.0256921518", + "0.9789418673", + "1.0342373434", + "1.0285995921", + "1.074085015", + "1.0521801932", + "1.044534957", + "1.031865083", + "0.9447539477", + "0.9486715638", + "1.056826289", + "1.0393822927", + "1.0433296052", + "1.0381419542", + "1.0107258214", + "1.0998011864", + "1.0473707525", + "1.0474171274", + "1.1444659973", + "1.1750129601", + "1.1304247738", + "1.1374171452", + "1.1101808004", + "1.1155685986", + "1.1147357207", + "1.1069024051", + "1.0495230232", + "1.1981367755", + "1.252301743", + "1.2193246663", + "1.2085230654", + "1.21582898", + "1.1564241414", + "1.1690249723", + "1.1760825853", + "1.171320553", + "1.2206835945", + "1.2266704667", + "1.2360693158", + "1.248160696", + "1.183336736", + "1.2251254571", + "1.2232570408", + "1.1496714786", + "1.1477992076", + "1.1759949813", + "1.1690983504", + "1.2209171017", + "1.1245929905", + "1.0699223321", + "1.087736063", + "1.0504806672", + "1.0828803947", + "1.1661111555", + "1.1793535117", + "1.1942697391", + "1.2095061463", + "1.1232747418", + "1.0556637909", + "1.1160465088", + "1.1887508031", + "1.0345852979", + "1.0634439", + "1.0695661486", + "1.1263555205", + "1.0796856386", + "1.0861992844", + "1.0909816304", + "1.0722302697", + "1.0984768166", + "1.1657545186", + "1.1723086828", + "1.2000941978", + "1.213097188", + "1.209717488", + "1.0883544076", + "1.1153987147", + "1.0786877592", + "1.0841049777", + "1.1360895896", + "1.1684028109", + "1.1603381893", + "1.1687536527", + "1.15584831", + "1.142955224", + "1.147501712", + "1.2011270039", + "1.2565128253", + "1.3532701465", + "1.2663945644", + "1.2657642595", + "1.2935900112", + "1.2309776515", + "1.2978237708", + "1.2928698443", + "1.2578447436", + "1.2671082093", + "1.1623943282", + "1.4539513935", + "1.3801060848", + "1.3892951052", + "1.3168047329", + "1.3290955745", + "1.318710475", + "1.4209140841", + "1.3481457219", + "1.3863333368", + "1.380416211", + "1.358300693", + "1.2875279065", + "1.29027275", + "1.3349313001", + "1.3286920585", + "1.3332808591", + "1.2986792713", + "1.2902602468", + "1.2822234054", + "1.3418725269", + "1.300701171", + "1.3083698734", + "1.2788907022", + "1.2316376219", + "1.3352002742", + "1.2732843853", + "1.2664177406", + "1.2866459725", + "1.3627902301", + "1.3750617887", + "1.3836506519", + "1.3787628833", + "1.3725581569", + "1.3623983621", + "1.3614164733", + "1.3547633914", + "1.4729582689", + "1.453841544", + "1.3277766639", + "1.3770620069", + "1.376989325", + "1.3706300966", + "1.3731428671", + "1.4392253672", + "1.4337753448", + "1.3886538054", + "1.3746184618", + "1.3719655597", + "1.3604694757", + "1.3792028694", + "1.3476792452", + "1.3386350949", + "1.334473535", + "1.3500342289", + "1.3455045398", + "1.3364025921", + "1.3429725065", + "1.3576478203", + "1.3723983928", + "1.3813327596", + "1.4077974473", + "1.3593280548", + "1.3833398225", + "1.3942648461", + "1.3379532007", + "1.3922729398", + "1.3672050875", + "1.3431424984", + "1.3426437276", + "1.3503370447", + "1.344301935", + "1.3174340119", + "1.32537907", + "1.3285212794", + "1.2998015639" + ] + }, + "essential_compounds": [ + "12dgr180", + "2obut", + "4hbz", + "ac", + "acald", + "acgam", + "actn_R", + "ade", + "adocbl", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arg_L", + "arsenb", + "asn_L", + "asp_L", + "btn", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "chols", + "chtbs", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "ddca", + "drib", + "etha", + "etoh", + "fe2", + "fe3", + "fecrm", + "fol", + "for", + "fru", + "gal", + "galt", + "gam", + "gbbtn", + "glc_D", + "glcn", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "h2o", + "h", + "hdca", + "hg2", + "his_L", + "hxan", + "ile_L", + "k", + "kesto", + "kestopt", + "kestottr", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "o2", + "ocdca", + "orn", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppi", + "pro_L", + "ptrc", + "pyr", + "q8", + "rib_D", + "ribflv", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "sheme", + "so4", + "spmd", + "succ", + "sucr", + "thm", + "thr_L", + "tre", + "trp_L", + "ttdca", + "tyr_L", + "ura", + "val_L", + "xan", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_422.json b/agents/agora/agent_422.json new file mode 100644 index 0000000000000000000000000000000000000000..5a6d291674c80dbd304e1cf4ed8dbfb43a1e9bcd --- /dev/null +++ b/agents/agora/agent_422.json @@ -0,0 +1,968 @@ +{ + "id": 422, + "name": "Fusobacterium_periodonticum_1_1_41FAA", + "N_R": 1084, + "taxonomy": { + "k": 422, + "tax_distance": [ + "2.4820486882", + "2.0641708209", + "2.0574715918", + "2.2840542989", + "1.965454225", + "2.0105829119", + "1.9918776141", + "1.9889350198", + "2.0529166181", + "1.9712725262", + "1.9883372296", + "2.0964595434", + "2.0694773217", + "2.2974912796", + "2.3458480967", + "2.3761806073", + "2.2565302094", + "2.2654543262", + "2.3009288018", + "1.8339131178", + "1.7692421411", + "1.5187208824", + "1.45207045", + "1.3305907733", + "1.1564114945", + "1.1506002864", + "1.147245715", + "1.1496067694", + "1.1338404794", + "1.1251547165", + "1.1276056226", + "1.2291915587", + "1.2387293615", + "1.2350954515", + "1.2507915201", + "1.2192899401", + "1.2420358842", + "1.2603417957", + "1.2413098327", + "1.5342504917", + "1.279092113", + "1.197731057", + "1.2044963632", + "1.2071039433", + "1.2038722013", + "1.206845583", + "1.2019469781", + "1.2023320134", + "1.1965171026", + "1.188555913", + "1.130133735", + "1.135646135", + "1.1299053017", + "1.1020590311", + "1.1085807752", + "1.1376827724", + "1.1116058856", + "1.109589858", + "1.1303442636", + "1.1280043689", + "1.1112625414", + "1.136613313", + "1.1386881028", + "1.1373572096", + "1.1517484271", + "1.153470589", + "1.153470589", + "1.1601161717", + "1.1601161717", + "1.1601161717", + "1.1601161717", + "1.1601161717", + "1.1601161717", + "1.1601161717", + "1.1601161717", + "1.156036809", + "1.1563825462", + "1.1499508386", + "1.1604433132", + "1.1595380713", + "1.1556399017", + "1.1538972281", + "1.1552157979", + "1.1517139174", + "1.1466361691", + "1.1499812947", + "1.1554270615", + "1.1508888698", + "1.1358889137", + "1.1442600286", + "1.1389846434", + "1.1551325844", + "1.1504352952", + "1.1545688645", + "1.1325291539", + "1.1271289701", + "1.1411953252", + "1.1518557342", + "1.1686527772", + "1.151062487", + "1.1410673685", + "1.1397495509", + "1.120499171", + "1.13337766", + "1.192250105", + "1.1870981933", + "1.2539944506", + "1.2201551946", + "1.1573465538", + "1.1610728106", + "1.1638062777", + "1.1567021962", + "1.1567021962", + "1.138078294", + "1.1409824403", + "1.1328819236", + "1.1684076223", + "1.1051850728", + "1.0830941594", + "1.1009585157", + "1.0876875204", + "1.0881131128", + "1.2063648264", + "1.2135552772", + "1.2349962901", + "1.0395925744", + "1.2093415277", + "1.2160167618", + "1.2006536695", + "1.2202876747", + "1.2094747607", + "1.214541247", + "1.2060449694", + "1.1990948643", + "1.1899651672", + "1.1906232876", + "1.2095372108", + "1.1826557669", + "1.1646915564", + "1.2585794973", + "1.259953371", + "1.2292649587", + "1.2868446493", + "1.2244232368", + "1.2299171796", + "1.2269561545", + "1.2516631396", + "1.2408406908", + "1.1489976188", + "1.1200875293", + "1.0812764693", + "1.0591751761", + "1.0505333698", + "1.0454131787", + "1.0822848044", + "1.0847799303", + "1.0565918614", + "1.0449539075", + "1.0485404165", + "1.1174935273", + "1.1242019094", + "1.0938309628", + "1.217749036", + "1.2122341406", + "1.2145751918", + "1.1722982656", + "1.1684442861", + "1.2063508598", + "1.1981740455", + "1.166932023", + "1.1684913817", + "1.1865113754", + "1.1432065807", + "1.1323704517", + "1.1335310042", + "1.1670173456", + "1.1551937929", + "1.1365669357", + "1.155555558", + "1.1368875593", + "1.1507025015", + "1.1449199305", + "1.1438515485", + "1.1644100002", + "1.1601974528", + "1.1430784074", + "1.1773067814", + "1.1620725397", + "1.1671848487", + "1.1665781632", + "1.1309765328", + "1.1269563246", + "1.111488973", + "1.1298354782", + "1.1267691034", + "1.1010775096", + "1.0840647617", + "1.0787571108", + "1.0834988954", + "1.0826402847", + "1.1154062446", + "1.1144255828", + "1.1384653804", + "1.1163563534", + "1.0768483614", + "1.0800127722", + "1.1050746642", + "1.1013657801", + "1.0771151634", + "1.0696578135", + "1.0720110728", + "1.0811886077", + "1.0069545108", + "1.0495576116", + "1.0338538409", + "1.0276920777", + "1.0214118329", + "1.0093092153", + "1.0124795547", + "1.0546516441", + "1.4890434753", + "1.5738216744", + "1.4863570993", + "1.4715393872", + "1.4498667544", + "1.0035444133", + "1.0223488193", + "1.0722816844", + "1.0339209324", + "1.0491581354", + "1.162695273", + "1.1164658801", + "1.1381175543", + "1.0967842082", + "1.0101225197", + "1.0225048626", + "1.0289959338", + "1.0894224706", + "1.080622938", + "1.078704207", + "1.1047064881", + "1.1020140525", + "1.0932459969", + "1.1247666205", + "1.132850085", + "1.1170388118", + "1.090420562", + "1.0850749889", + "1.0904856648", + "1.0791925236", + "1.0241616288", + "1.0292464507", + "1.0284912272", + "1.0753028117", + "1.0307325323", + "1.0131843339", + "1.0906091401", + "1.0438765003", + "1.0189590378", + "1.031994529", + "1.0026100154", + "0.9678236572", + "1.051911693", + "1.0542654794", + "1.0590426891", + "1.0643882871", + "1.0300872613", + "1.0907430106", + "1.097579126", + "1.0940901235", + "1.1067551889", + "1.0928391461", + "1.0726232399", + "1.0640224712", + "1.1106743394", + "1.1299526121", + "1.180631632", + "1.0235540158", + "0.9927267217", + "1.0857324356", + "1.0847157357", + "1.07193666", + "1.0288613729", + "1.0936846871", + "1.0846279349", + "1.0872801972", + "1.1184195025", + "1.0600783693", + "1.0453446665", + "1.0269695382", + "1.0552851769", + "1.0267922516", + "1.0819381689", + "1.1129315689", + "1.1355644167", + "1.0922482397", + "1.0635944512", + "1.0838413479", + "1.0635949595", + "1.0499809846", + "1.0147259137", + "1.0496754732", + "0.9807649973", + "0.9980303683", + "1.0808390793", + "1.0692044185", + "1.0663059922", + "1.0764602994", + "1.0848231849", + "1.0741458237", + "1.0860863913", + "1.0745529338", + "1.0720914272", + "1.0405022956", + "1.0464972014", + "1.0527551986", + "1.0399096532", + "1.0734482901", + "1.0056775018", + "1.0641754421", + "1.0613202095", + "1.051560742", + "1.0507858656", + "1.0769279904", + "1.0535367536", + "1.0232306156", + "0.9379025162", + "0.949707061", + "0.9507243369", + "0.8947475597", + "0.9068744802", + "0.9035860782", + "0.8849118791", + "0.8935938308", + "0.8895530439", + "0.8795898941", + "0.9053909207", + "0.902079584", + "0.8654503057", + "0.8839887384", + "0.8417474794", + "0.8444264182", + "0.8584168335", + "0.8599179432", + "0.8465880981", + "0.836066704", + "0.8628211363", + "0.8487441892", + "0.8087378921", + "0.8161014277", + "0.9856689912", + "0.8060024824", + "0.8105468367", + "0.8141506106", + "0.8100980024", + "0.7772159757", + "0.8070246505", + "0.8270838927", + "0.8290766164", + "0.827159017", + "0.810475928", + "0.8093159984", + "0.7750795886", + "0.7773553901", + "0.9032387836", + "0.9144331397", + "0.8007199154", + "0.8063773272", + "0.7964486356", + "0.760580455", + "0.7861888519", + "0.7769237374", + "0.7690589896", + "0.7682050592", + "0.7757296151", + "0.7697221413", + "0.7887910602", + "0.7827147434", + "0.7944370942", + "0.7892043184", + "0.7759880692", + "0.7640543675", + "0.7737150934", + "0.7695616091", + "0.7754639117", + "0.7675155669", + "0.7429550312", + "0.7523679977", + "0.7461995823", + "0.7742307699", + "0.7719258223", + "0.2260805546", + "0.2399116774", + "0.2526037881", + "0.2563995818", + "0.2600234807", + "0.2488103375", + "0.2648607354", + "0.2454106476", + "0.2418339465", + "0.2587510054", + "0.2485519972", + "0.253110769", + "0.2611637907", + "0.2469489542", + "0.2387737476", + "0.2988647271", + "0.2753269538", + "0.2756439798", + "0.2762873937", + "0.270794799", + "0.2609001749", + "0.3210772513", + "0.2919861184", + "0.2142288844", + "0.2330439038", + "0.252809662", + "0.2289193523", + "0.210622727", + "0.1218647501", + "0.1131988164", + "0.0", + "0.152487715", + "0.3528102314", + "0.3589814885", + "0.362699146", + "0.3979612376", + "0.3519728556", + "0.3776486633", + "0.3145596907", + "0.2974412526", + "0.6167671011", + "0.6277557897", + "0.5618270802", + "0.5631039566", + "0.5212871087", + "0.5377062797", + "0.5360899456", + "0.559829075", + "0.5472536138", + "0.5250507941", + "0.7062417998", + "0.7125411354", + "0.69254283", + "0.7050712759", + "0.7035972782", + "0.6719990684", + "0.6817982079", + "0.7307267579", + "0.766150921", + "0.7409637417", + "0.7216519395", + "0.6705058643", + "0.682304465", + "0.6819979148", + "0.7128138102", + "0.713171506", + "0.6458889849", + "0.7836615913", + "0.7882452325", + "0.7979888085", + "0.7777503526", + "0.7394456724", + "0.8088391692", + "0.7898028457", + "0.7946645339", + "0.7314526875", + "0.7631648009", + "0.7718008596", + "0.7834586138", + "0.7658940743", + "0.7525297587", + "0.7168967771", + "0.7159824047", + "0.7224490945", + "0.7982873772", + "0.7784038895", + "0.8537867879", + "0.8077972348", + "0.7621396581", + "0.768344695", + "0.7732849844", + "0.7679763257", + "0.7621747247", + "0.7896149937", + "0.7717585299", + "0.7637090363", + "0.7546960693", + "0.7766335463", + "0.7711317015", + "0.7727655935", + "0.7367155024", + "0.7388719738", + "0.7119977609", + "0.7952614514", + "0.7709996751", + "0.7563578615", + "0.7366265156", + "0.8723502063", + "0.8756100146", + "0.9035169959", + "0.8581528169", + "0.8622561329", + "0.8763046124", + "0.8900210782", + "0.9136602994", + "0.8548556077", + "0.8328694398", + "0.8614756723", + "0.8297263277", + "0.833040153", + "0.8460073998", + "0.8263620349", + "0.8336243791", + "0.8192595262", + "0.8151710973", + "0.89691473", + "0.8891061956", + "0.8434253861", + "0.8641923488", + "0.8608730781", + "0.9140824376", + "0.8414807919", + "0.825692015", + "0.8433245419", + "0.8441476576", + "0.8455775198", + "0.8709984898", + "0.8829231392", + "0.9413871594", + "0.9447735536", + "0.9278192311", + "0.9130513688", + "0.8938252359", + "0.8629593566", + "1.2242414184", + "1.2486818949", + "1.2125266164", + "1.2231772211", + "1.2004216866", + "1.1866700657", + "1.2770184512", + "1.3058626363", + "1.3069805585", + "1.2312496939", + "1.2287818186", + "1.2288485342", + "1.22263864", + "1.2407258486", + "1.2167429928", + "1.1925951623", + "1.1553920524", + "1.16353505", + "1.1417164714", + "1.1624481209", + "1.1207325506", + "1.1352200835", + "1.1368725097", + "1.1424883507", + "1.1349955353", + "1.1345301362", + "1.1317909883", + "1.1220933612", + "1.1398005835", + "1.1199469479", + "1.1223940988", + "1.1181342644", + "1.1327927114", + "1.1518928135", + "1.0951906948", + "1.117591469", + "1.1256290998", + "1.1247711902", + "1.1080278448", + "1.0972500053", + "1.097381163", + "1.1020738106", + "1.1053905844", + "1.1381111964", + "1.1693132849", + "1.164241307", + "1.0881830365", + "1.0890743215", + "1.0843260098", + "1.0903752599", + "1.0114069419", + "0.9083636248", + "0.9219961378", + "1.1612232395", + "1.3690738653", + "1.1227144284", + "1.1832297139", + "1.1846216629", + "1.1604850555", + "1.1681635587", + "1.1908839497", + "1.1806854818", + "1.1980945778", + "1.1992486392", + "1.1958113092", + "1.1954723508", + "1.2222568231", + "1.1922143054", + "1.1958535839", + "1.1996781654", + "1.1998976992", + "1.1632503348", + "1.16812665", + "1.1891726901", + "1.1696248771", + "1.1769656242", + "1.1288770388", + "1.1213251331", + "1.1520377141", + "1.1482134671", + "1.1605625593", + "1.1654201951", + "1.1600648408", + "1.1596282706", + "1.1506793994", + "1.1626958196", + "1.1403450783", + "1.1562935969", + "1.165006336", + "1.1607210541", + "1.1689186205", + "1.184174842", + "1.1796441895", + "1.1207384855", + "1.1584889957", + "1.1489903923", + "1.1110844636", + "1.3812597911", + "1.4138964489", + "1.3793730096", + "1.3880518631", + "1.3619423193", + "1.1757324794", + "1.0290027075", + "1.0210352822", + "1.0743703933", + "1.0376424786", + "1.0426829697", + "1.0404523716", + "1.0281059509", + "1.033048552", + "0.9862982675", + "1.0415937436", + "1.0359559923", + "1.0814414152", + "1.0595365934", + "1.0518913572", + "1.0392214832", + "0.9521103479", + "0.956027964", + "1.0641826892", + "1.0467386929", + "1.0506860054", + "1.0454983544", + "1.0180822216", + "1.1071575866", + "1.0547271527", + "1.0547735276", + "1.1518223975", + "1.1823693603", + "1.137781174", + "1.1447735454", + "1.1175372006", + "1.1229249988", + "1.1220921209", + "1.1142588053", + "1.0568794234", + "1.2054931757", + "1.2596581432", + "1.2266810665", + "1.2158794656", + "1.2231853802", + "1.1637805416", + "1.1763813725", + "1.1834389855", + "1.1786769532", + "1.2280399947", + "1.2340268669", + "1.243425716", + "1.2555170962", + "1.1906931362", + "1.2324818573", + "1.230613441", + "1.1570278788", + "1.1551556078", + "1.1833513815", + "1.1764547506", + "1.2282735019", + "1.1319493907", + "1.0772787323", + "1.0950924632", + "1.0578370674", + "1.0902367949", + "1.1734675557", + "1.1867099119", + "1.2016261393", + "1.2168625465", + "1.130631142", + "1.0630201911", + "1.123402909", + "1.1961072033", + "1.0419416981", + "1.0708003002", + "1.0769225488", + "1.1337119207", + "1.0870420388", + "1.0935556846", + "1.0983380306", + "1.0795866699", + "1.1058332168", + "1.1731109188", + "1.179665083", + "1.207450598", + "1.2204535882", + "1.2170738882", + "1.0957108078", + "1.1227551149", + "1.0860441594", + "1.0914613779", + "1.1434459898", + "1.1757592111", + "1.1676945895", + "1.1761100529", + "1.1632047102", + "1.1503116242", + "1.1548581122", + "1.2084834041", + "1.2638692255", + "1.3606265467", + "1.2737509646", + "1.2731206597", + "1.3009464114", + "1.2383340517", + "1.305180171", + "1.3002262445", + "1.2652011438", + "1.2744646095", + "1.1697507284", + "1.4613077937", + "1.387462485", + "1.3966515054", + "1.3241611331", + "1.3364519747", + "1.3260668752", + "1.4282704843", + "1.3555021221", + "1.393689737", + "1.3877726112", + "1.3656570932", + "1.2948843067", + "1.2976291502", + "1.3422877003", + "1.3360484587", + "1.3406372593", + "1.3060356715", + "1.297616647", + "1.2895798056", + "1.3492289271", + "1.3080575712", + "1.3157262736", + "1.2862471024", + "1.2389940221", + "1.3425566744", + "1.2806407855", + "1.2737741408", + "1.2940023727", + "1.3701466303", + "1.3824181889", + "1.3910070521", + "1.3861192835", + "1.3799145571", + "1.3697547623", + "1.3687728735", + "1.3621197916", + "1.4803146691", + "1.4611979442", + "1.3351330641", + "1.3844184071", + "1.3843457252", + "1.3779864968", + "1.3804992673", + "1.4465817674", + "1.441131745", + "1.3960102056", + "1.381974862", + "1.3793219599", + "1.3678258759", + "1.3865592696", + "1.3550356454", + "1.3459914951", + "1.3418299352", + "1.3573906291", + "1.35286094", + "1.3437589923", + "1.3503289067", + "1.3650042205", + "1.379754793", + "1.3886891598", + "1.4151538475", + "1.366684455", + "1.3906962227", + "1.4016212463", + "1.3453096009", + "1.39962934", + "1.3745614877", + "1.3504988986", + "1.3500001278", + "1.3576934449", + "1.3516583352", + "1.3247904121", + "1.3327354702", + "1.3358776796", + "1.3071579641" + ] + }, + "essential_compounds": [ + "4hbz", + "ac", + "acald", + "acgam", + "actn_R", + "ade", + "adocbl", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arg_L", + "arsenb", + "asn_L", + "asp_L", + "btn", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "chols", + "chtbs", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "ddca", + "drib", + "etha", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "gal", + "gbbtn", + "glc_D", + "glcn", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "h2", + "h2o", + "h", + "hdca", + "hg2", + "his_L", + "hxan", + "ile_L", + "k", + "kesto", + "kestopt", + "kestottr", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "o2", + "ocdca", + "orn", + "pb", + "phe_L", + "pi", + "ppi", + "pro_L", + "ptrc", + "pydx", + "pyr", + "rib_D", + "ribflv", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "so4", + "spmd", + "succ", + "sucr", + "thm", + "thr_L", + "tre", + "trp_L", + "ttdca", + "tyr_L", + "ura", + "urea", + "val_L", + "xan", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_423.json b/agents/agora/agent_423.json new file mode 100644 index 0000000000000000000000000000000000000000..cc646161c0bbf61275ea0f1ce04c79b3869d08c7 --- /dev/null +++ b/agents/agora/agent_423.json @@ -0,0 +1,976 @@ +{ + "id": 423, + "name": "Fusobacterium_periodonticum_2_1_31", + "N_R": 1040, + "taxonomy": { + "k": 423, + "tax_distance": [ + "2.4644468652", + "2.0465689979", + "2.0398697688", + "2.2664524759", + "1.947852402", + "1.9929810889", + "1.9742757911", + "1.9713331968", + "2.0353147951", + "1.9536707032", + "1.9707354066", + "2.0788577204", + "2.0518754987", + "2.2798894566", + "2.3282462737", + "2.3585787843", + "2.2389283864", + "2.2478525032", + "2.2833269788", + "1.8163112948", + "1.7516403181", + "1.5011190594", + "1.434468627", + "1.3129889503", + "1.1388096715", + "1.1329984634", + "1.129643892", + "1.1320049464", + "1.1162386564", + "1.1075528935", + "1.1100037996", + "1.2115897357", + "1.2211275385", + "1.2174936285", + "1.2331896971", + "1.2016881171", + "1.2244340612", + "1.2427399727", + "1.2237080097", + "1.5166486687", + "1.26149029", + "1.180129234", + "1.1868945402", + "1.1895021203", + "1.1862703783", + "1.18924376", + "1.1843451551", + "1.1847301904", + "1.1789152796", + "1.17095409", + "1.112531912", + "1.118044312", + "1.1123034787", + "1.0844572081", + "1.0909789522", + "1.1200809494", + "1.0940040626", + "1.091988035", + "1.1127424406", + "1.1104025459", + "1.0936607184", + "1.11901149", + "1.1210862798", + "1.1197553866", + "1.1341466041", + "1.135868766", + "1.135868766", + "1.1425143487", + "1.1425143487", + "1.1425143487", + "1.1425143487", + "1.1425143487", + "1.1425143487", + "1.1425143487", + "1.1425143487", + "1.138434986", + "1.1387807232", + "1.1323490156", + "1.1428414902", + "1.1419362483", + "1.1380380787", + "1.1362954051", + "1.1376139749", + "1.1341120944", + "1.1290343461", + "1.1323794717", + "1.1378252385", + "1.1332870468", + "1.1182870907", + "1.1266582056", + "1.1213828204", + "1.1375307614", + "1.1328334722", + "1.1369670415", + "1.1149273309", + "1.1095271471", + "1.1235935022", + "1.1342539112", + "1.1510509542", + "1.133460664", + "1.1234655455", + "1.1221477279", + "1.102897348", + "1.115775837", + "1.174648282", + "1.1694963703", + "1.2363926276", + "1.2025533716", + "1.1397447308", + "1.1434709876", + "1.1462044547", + "1.1391003732", + "1.1391003732", + "1.120476471", + "1.1233806173", + "1.1152801006", + "1.1508057993", + "1.0875832498", + "1.0654923364", + "1.0833566927", + "1.0700856974", + "1.0705112898", + "1.1887630034", + "1.1959534542", + "1.2173944671", + "1.0219907514", + "1.1917397047", + "1.1984149388", + "1.1830518465", + "1.2026858517", + "1.1918729377", + "1.196939424", + "1.1884431464", + "1.1814930413", + "1.1723633442", + "1.1730214646", + "1.1919353878", + "1.1650539439", + "1.1470897334", + "1.2409776743", + "1.242351548", + "1.2116631357", + "1.2692428263", + "1.2068214138", + "1.2123153566", + "1.2093543315", + "1.2340613166", + "1.2232388678", + "1.1313957958", + "1.1024857063", + "1.0636746463", + "1.0415733531", + "1.0329315468", + "1.0278113557", + "1.0646829814", + "1.0671781073", + "1.0389900384", + "1.0273520845", + "1.0309385935", + "1.0998917043", + "1.1066000864", + "1.0762291398", + "1.200147213", + "1.1946323176", + "1.1969733688", + "1.1546964426", + "1.1508424631", + "1.1887490368", + "1.1805722225", + "1.1493302", + "1.1508895587", + "1.1689095524", + "1.1256047577", + "1.1147686287", + "1.1159291812", + "1.1494155226", + "1.1375919699", + "1.1189651127", + "1.137953735", + "1.1192857363", + "1.1331006785", + "1.1273181075", + "1.1262497255", + "1.1468081772", + "1.1425956298", + "1.1254765844", + "1.1597049584", + "1.1444707167", + "1.1495830257", + "1.1489763402", + "1.1133747098", + "1.1093545016", + "1.09388715", + "1.1122336552", + "1.1091672804", + "1.0834756866", + "1.0664629387", + "1.0611552878", + "1.0658970724", + "1.0650384617", + "1.0978044216", + "1.0968237598", + "1.1208635574", + "1.0987545304", + "1.0592465384", + "1.0624109492", + "1.0874728412", + "1.0837639571", + "1.0595133404", + "1.0520559905", + "1.0544092498", + "1.0635867847", + "0.9893526878", + "1.0319557886", + "1.0162520179", + "1.0100902547", + "1.0038100099", + "0.9917073923", + "0.9948777317", + "1.0370498211", + "1.4714416523", + "1.5562198514", + "1.4687552763", + "1.4539375642", + "1.4322649314", + "0.9859425903", + "1.0047469963", + "1.0546798614", + "1.0163191094", + "1.0315563124", + "1.14509345", + "1.0988640571", + "1.1205157313", + "1.0791823852", + "0.9925206967", + "1.0049030396", + "1.0113941108", + "1.0718206476", + "1.063021115", + "1.061102384", + "1.0871046651", + "1.0844122295", + "1.0756441739", + "1.1071647975", + "1.115248262", + "1.0994369888", + "1.072818739", + "1.0674731659", + "1.0728838418", + "1.0615907006", + "1.0065598058", + "1.0116446277", + "1.0108894042", + "1.0577009887", + "1.0131307093", + "0.9955825109", + "1.0730073171", + "1.0262746773", + "1.0013572148", + "1.014392706", + "0.9850081924", + "0.9502218342", + "1.03430987", + "1.0366636564", + "1.0414408661", + "1.0467864641", + "1.0124854383", + "1.0731411876", + "1.079977303", + "1.0764883005", + "1.0891533659", + "1.0752373231", + "1.0550214169", + "1.0464206482", + "1.0930725164", + "1.1123507891", + "1.163029809", + "1.0059521928", + "0.9751248987", + "1.0681306126", + "1.0671139127", + "1.054334837", + "1.0112595499", + "1.0760828641", + "1.0670261119", + "1.0696783742", + "1.1008176795", + "1.0424765463", + "1.0277428435", + "1.0093677152", + "1.0376833539", + "1.0091904286", + "1.0643363459", + "1.0953297459", + "1.1179625937", + "1.0746464167", + "1.0459926282", + "1.0662395249", + "1.0459931365", + "1.0323791616", + "0.9971240907", + "1.0320736502", + "0.9631631743", + "0.9804285453", + "1.0632372563", + "1.0516025955", + "1.0487041692", + "1.0588584764", + "1.0672213619", + "1.0565440007", + "1.0684845683", + "1.0569511108", + "1.0544896042", + "1.0229004726", + "1.0288953784", + "1.0351533756", + "1.0223078302", + "1.0558464671", + "0.9880756788", + "1.0465736191", + "1.0437183865", + "1.033958919", + "1.0331840426", + "1.0593261674", + "1.0359349306", + "1.0056287926", + "0.9203006932", + "0.932105238", + "0.9331225139", + "0.8771457367", + "0.8892726572", + "0.8859842552", + "0.8673100561", + "0.8759920078", + "0.8719512209", + "0.8619880711", + "0.8877890977", + "0.884477761", + "0.8478484827", + "0.8663869154", + "0.8241456564", + "0.8268245952", + "0.8408150105", + "0.8423161202", + "0.8289862751", + "0.818464881", + "0.8452193133", + "0.8311423662", + "0.7911360691", + "0.7984996047", + "0.9680671682", + "0.7884006594", + "0.7929450137", + "0.7965487876", + "0.7924961794", + "0.7596141527", + "0.7894228275", + "0.8094820697", + "0.8114747934", + "0.809557194", + "0.792874105", + "0.7917141754", + "0.7574777656", + "0.7597535671", + "0.8856369606", + "0.8968313167", + "0.7831180924", + "0.7887755042", + "0.7788468126", + "0.742978632", + "0.7685870289", + "0.7593219144", + "0.7514571666", + "0.7506032362", + "0.7581277921", + "0.7521203183", + "0.7711892372", + "0.7651129204", + "0.7768352712", + "0.7716024954", + "0.7583862462", + "0.7464525445", + "0.7561132704", + "0.7519597861", + "0.7578620887", + "0.7499137439", + "0.7253532082", + "0.7347661747", + "0.7285977593", + "0.7566289469", + "0.7543239993", + "0.2084787316", + "0.2223098544", + "0.2350019651", + "0.2387977588", + "0.2424216577", + "0.2312085145", + "0.2472589124", + "0.2278088246", + "0.2242321235", + "0.2411491824", + "0.2309501742", + "0.235508946", + "0.2435619677", + "0.2293471312", + "0.2211719246", + "0.2812629041", + "0.2577251308", + "0.2580421568", + "0.2586855707", + "0.253192976", + "0.2432983519", + "0.3034754283", + "0.2743842954", + "0.1966270614", + "0.2154420808", + "0.235207839", + "0.2113175293", + "0.193020904", + "0.1288261233", + "0.1451313148", + "0.152487715", + "0.0", + "0.3352084084", + "0.3413796655", + "0.345097323", + "0.3803594146", + "0.3343710326", + "0.3600468403", + "0.2969578677", + "0.2798394296", + "0.5991652781", + "0.6101539667", + "0.5442252572", + "0.5455021336", + "0.5036852857", + "0.5201044567", + "0.5184881226", + "0.542227252", + "0.5296517908", + "0.5074489711", + "0.6886399768", + "0.6949393124", + "0.674941007", + "0.6874694529", + "0.6859954552", + "0.6543972454", + "0.6641963849", + "0.7131249349", + "0.748549098", + "0.7233619187", + "0.7040501165", + "0.6529040413", + "0.664702642", + "0.6643960918", + "0.6952119872", + "0.695569683", + "0.6282871619", + "0.7660597683", + "0.7706434095", + "0.7803869855", + "0.7601485296", + "0.7218438494", + "0.7912373462", + "0.7722010227", + "0.7770627109", + "0.7138508645", + "0.7455629779", + "0.7541990366", + "0.7658567908", + "0.7482922513", + "0.7349279357", + "0.6992949541", + "0.6983805817", + "0.7048472715", + "0.7806855542", + "0.7608020665", + "0.8361849649", + "0.7901954118", + "0.7445378351", + "0.750742872", + "0.7556831614", + "0.7503745027", + "0.7445729017", + "0.7720131707", + "0.7541567069", + "0.7461072133", + "0.7370942463", + "0.7590317233", + "0.7535298785", + "0.7551637705", + "0.7191136794", + "0.7212701508", + "0.6943959379", + "0.7776596284", + "0.7533978521", + "0.7387560385", + "0.7190246926", + "0.8547483833", + "0.8580081916", + "0.8859151729", + "0.8405509939", + "0.8446543099", + "0.8587027894", + "0.8724192552", + "0.8960584764", + "0.8372537847", + "0.8152676168", + "0.8438738493", + "0.8121245047", + "0.81543833", + "0.8284055768", + "0.8087602119", + "0.8160225561", + "0.8016577032", + "0.7975692743", + "0.879312907", + "0.8715043726", + "0.8258235631", + "0.8465905258", + "0.8432712551", + "0.8964806146", + "0.8238789689", + "0.808090192", + "0.8257227189", + "0.8265458346", + "0.8279756968", + "0.8533966668", + "0.8653213162", + "0.9237853364", + "0.9271717306", + "0.9102174081", + "0.8954495458", + "0.8762234129", + "0.8453575336", + "1.2066395954", + "1.2310800719", + "1.1949247934", + "1.2055753981", + "1.1828198636", + "1.1690682427", + "1.2594166282", + "1.2882608133", + "1.2893787355", + "1.2136478709", + "1.2111799956", + "1.2112467112", + "1.205036817", + "1.2231240256", + "1.1991411698", + "1.1749933393", + "1.1377902294", + "1.145933227", + "1.1241146484", + "1.1448462979", + "1.1031307276", + "1.1176182605", + "1.1192706867", + "1.1248865277", + "1.1173937123", + "1.1169283132", + "1.1141891653", + "1.1044915382", + "1.1221987605", + "1.1023451249", + "1.1047922758", + "1.1005324414", + "1.1151908884", + "1.1342909905", + "1.0775888718", + "1.099989646", + "1.1080272768", + "1.1071693672", + "1.0904260218", + "1.0796481823", + "1.07977934", + "1.0844719876", + "1.0877887614", + "1.1205093734", + "1.1517114619", + "1.146639484", + "1.0705812135", + "1.0714724985", + "1.0667241868", + "1.0727734369", + "0.9938051189", + "0.8907618018", + "0.9043943148", + "1.1436214165", + "1.3514720423", + "1.1051126054", + "1.1656278909", + "1.1670198399", + "1.1428832325", + "1.1505617357", + "1.1732821267", + "1.1630836588", + "1.1804927548", + "1.1816468162", + "1.1782094862", + "1.1778705278", + "1.2046550001", + "1.1746124824", + "1.1782517609", + "1.1820763424", + "1.1822958762", + "1.1456485118", + "1.150524827", + "1.1715708671", + "1.1520230541", + "1.1593638012", + "1.1112752158", + "1.1037233101", + "1.1344358911", + "1.1306116441", + "1.1429607363", + "1.1478183721", + "1.1424630178", + "1.1420264476", + "1.1330775764", + "1.1450939966", + "1.1227432553", + "1.1386917739", + "1.147404513", + "1.1431192311", + "1.1513167975", + "1.166573019", + "1.1620423665", + "1.1031366625", + "1.1408871727", + "1.1313885693", + "1.0934826406", + "1.3636579681", + "1.3962946259", + "1.3617711866", + "1.3704500401", + "1.3443404963", + "1.1581306564", + "1.0114008845", + "1.0034334592", + "1.0567685703", + "1.0200406556", + "1.0250811467", + "1.0228505486", + "1.0105041279", + "1.015446729", + "0.9686964445", + "1.0239919206", + "1.0183541693", + "1.0638395922", + "1.0419347704", + "1.0342895342", + "1.0216196602", + "0.9345085249", + "0.938426141", + "1.0465808662", + "1.0291368699", + "1.0330841824", + "1.0278965314", + "1.0004803986", + "1.0895557636", + "1.0371253297", + "1.0371717046", + "1.1342205745", + "1.1647675373", + "1.120179351", + "1.1271717224", + "1.0999353776", + "1.1053231758", + "1.1044902979", + "1.0966569823", + "1.0392776004", + "1.1878913527", + "1.2420563202", + "1.2090792435", + "1.1982776426", + "1.2055835572", + "1.1461787186", + "1.1587795495", + "1.1658371625", + "1.1610751302", + "1.2104381717", + "1.2164250439", + "1.225823893", + "1.2379152732", + "1.1730913132", + "1.2148800343", + "1.213011618", + "1.1394260558", + "1.1375537848", + "1.1657495585", + "1.1588529276", + "1.2106716789", + "1.1143475677", + "1.0596769093", + "1.0774906402", + "1.0402352444", + "1.0726349719", + "1.1558657327", + "1.1691080889", + "1.1840243163", + "1.1992607235", + "1.113029319", + "1.0454183681", + "1.105801086", + "1.1785053803", + "1.0243398751", + "1.0531984772", + "1.0593207258", + "1.1161100977", + "1.0694402158", + "1.0759538616", + "1.0807362076", + "1.0619848469", + "1.0882313938", + "1.1555090958", + "1.16206326", + "1.189848775", + "1.2028517652", + "1.1994720652", + "1.0781089848", + "1.1051532919", + "1.0684423364", + "1.0738595549", + "1.1258441668", + "1.1581573881", + "1.1500927665", + "1.1585082299", + "1.1456028872", + "1.1327098012", + "1.1372562892", + "1.1908815811", + "1.2462674025", + "1.3430247237", + "1.2561491416", + "1.2555188367", + "1.2833445884", + "1.2207322287", + "1.287578348", + "1.2826244215", + "1.2475993208", + "1.2568627865", + "1.1521489054", + "1.4437059707", + "1.369860662", + "1.3790496824", + "1.3065593101", + "1.3188501517", + "1.3084650522", + "1.4106686613", + "1.3379002991", + "1.376087914", + "1.3701707882", + "1.3480552702", + "1.2772824837", + "1.2800273272", + "1.3246858773", + "1.3184466357", + "1.3230354363", + "1.2884338485", + "1.280014824", + "1.2719779826", + "1.3316271041", + "1.2904557482", + "1.2981244506", + "1.2686452794", + "1.2213921991", + "1.3249548514", + "1.2630389625", + "1.2561723178", + "1.2764005497", + "1.3525448073", + "1.3648163659", + "1.3734052291", + "1.3685174605", + "1.3623127341", + "1.3521529393", + "1.3511710505", + "1.3445179686", + "1.4627128461", + "1.4435961212", + "1.3175312411", + "1.3668165841", + "1.3667439022", + "1.3603846738", + "1.3628974443", + "1.4289799444", + "1.423529922", + "1.3784083826", + "1.364373039", + "1.3617201369", + "1.3502240529", + "1.3689574466", + "1.3374338224", + "1.3283896721", + "1.3242281122", + "1.3397888061", + "1.335259117", + "1.3261571693", + "1.3327270837", + "1.3474023975", + "1.36215297", + "1.3710873368", + "1.3975520245", + "1.349082632", + "1.3730943997", + "1.3840194233", + "1.3277077779", + "1.382027517", + "1.3569596647", + "1.3328970756", + "1.3323983048", + "1.3400916219", + "1.3340565122", + "1.3071885891", + "1.3151336472", + "1.3182758566", + "1.2895561411" + ] + }, + "essential_compounds": [ + "4hbz", + "C02528", + "ac", + "acald", + "acgam", + "actn_R", + "ade", + "adocbl", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arg_L", + "arsenb", + "asn_L", + "asp_L", + "btn", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cholate", + "chols", + "chtbs", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "ddca", + "dgchol", + "drib", + "etha", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "gal", + "galt", + "gbbtn", + "gchola", + "glc_D", + "glcn", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "h2", + "h2o", + "h", + "hdca", + "hg2", + "his_L", + "hxan", + "ile_L", + "k", + "kesto", + "kestopt", + "kestottr", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "o2", + "ocdca", + "orn", + "pb", + "phe_L", + "pi", + "ppi", + "pro_L", + "ptrc", + "pydx", + "pyr", + "rib_D", + "ribflv", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "so4", + "spmd", + "succ", + "sucr", + "taur", + "tchola", + "tdchola", + "thm", + "thr_L", + "tre", + "trp_L", + "ttdca", + "tyr_L", + "ura", + "urea", + "val_L", + "xan", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_424.json b/agents/agora/agent_424.json new file mode 100644 index 0000000000000000000000000000000000000000..3b52a7044f692a01668aa86101042fee366f8a70 --- /dev/null +++ b/agents/agora/agent_424.json @@ -0,0 +1,969 @@ +{ + "id": 424, + "name": "Fusobacterium_russii_ATCC_25533", + "N_R": 1008, + "taxonomy": { + "k": 424, + "tax_distance": [ + "2.519954931", + "2.1020770637", + "2.0953778346", + "2.3219605417", + "2.0033604678", + "2.0484891547", + "2.0297838569", + "2.0268412626", + "2.0908228609", + "2.009178769", + "2.0262434724", + "2.1343657862", + "2.1073835645", + "2.3353975224", + "2.3837543395", + "2.4140868501", + "2.2944364522", + "2.303360569", + "2.3388350446", + "1.8718193606", + "1.8071483839", + "1.5566271252", + "1.4899766928", + "1.3684970161", + "1.1943177373", + "1.1885065292", + "1.1851519578", + "1.1875130122", + "1.1717467222", + "1.1630609593", + "1.1655118654", + "1.2670978015", + "1.2766356043", + "1.2730016943", + "1.2886977629", + "1.2571961829", + "1.279942127", + "1.2982480385", + "1.2792160755", + "1.5721567345", + "1.3169983558", + "1.2356372998", + "1.242402606", + "1.2450101861", + "1.2417784441", + "1.2447518258", + "1.2398532209", + "1.2402382562", + "1.2344233454", + "1.2264621558", + "1.1680399778", + "1.1735523778", + "1.1678115445", + "1.1399652739", + "1.146487018", + "1.1755890152", + "1.1495121284", + "1.1474961008", + "1.1682505064", + "1.1659106117", + "1.1491687842", + "1.1745195558", + "1.1765943456", + "1.1752634524", + "1.1896546699", + "1.1913768318", + "1.1913768318", + "1.1980224145", + "1.1980224145", + "1.1980224145", + "1.1980224145", + "1.1980224145", + "1.1980224145", + "1.1980224145", + "1.1980224145", + "1.1939430518", + "1.194288789", + "1.1878570814", + "1.198349556", + "1.1974443141", + "1.1935461445", + "1.1918034709", + "1.1931220407", + "1.1896201602", + "1.1845424119", + "1.1878875375", + "1.1933333043", + "1.1887951126", + "1.1737951565", + "1.1821662714", + "1.1768908862", + "1.1930388272", + "1.188341538", + "1.1924751073", + "1.1704353967", + "1.1650352129", + "1.179101568", + "1.189761977", + "1.20655902", + "1.1889687298", + "1.1789736113", + "1.1776557937", + "1.1584054138", + "1.1712839028", + "1.2301563478", + "1.2250044361", + "1.2919006934", + "1.2580614374", + "1.1952527966", + "1.1989790534", + "1.2017125205", + "1.194608439", + "1.194608439", + "1.1759845368", + "1.1788886831", + "1.1707881664", + "1.2063138651", + "1.1430913156", + "1.1210004022", + "1.1388647585", + "1.1255937632", + "1.1260193556", + "1.2442710692", + "1.25146152", + "1.2729025329", + "1.0774988172", + "1.2472477705", + "1.2539230046", + "1.2385599123", + "1.2581939175", + "1.2473810035", + "1.2524474898", + "1.2439512122", + "1.2370011071", + "1.22787141", + "1.2285295304", + "1.2474434536", + "1.2205620097", + "1.2025977992", + "1.2964857401", + "1.2978596138", + "1.2671712015", + "1.3247508921", + "1.2623294796", + "1.2678234224", + "1.2648623973", + "1.2895693824", + "1.2787469336", + "1.1869038616", + "1.1579937721", + "1.1191827121", + "1.0970814189", + "1.0884396126", + "1.0833194215", + "1.1201910472", + "1.1226861731", + "1.0944981042", + "1.0828601503", + "1.0864466593", + "1.1553997701", + "1.1621081522", + "1.1317372056", + "1.2556552788", + "1.2501403834", + "1.2524814346", + "1.2102045084", + "1.2063505289", + "1.2442571026", + "1.2360802883", + "1.2048382658", + "1.2063976245", + "1.2244176182", + "1.1811128235", + "1.1702766945", + "1.171437247", + "1.2049235884", + "1.1931000357", + "1.1744731785", + "1.1934618008", + "1.1747938021", + "1.1886087443", + "1.1828261733", + "1.1817577913", + "1.202316243", + "1.1981036956", + "1.1809846502", + "1.2152130242", + "1.1999787825", + "1.2050910915", + "1.204484406", + "1.1688827756", + "1.1648625674", + "1.1493952158", + "1.167741721", + "1.1646753462", + "1.1389837524", + "1.1219710045", + "1.1166633536", + "1.1214051382", + "1.1205465275", + "1.1533124874", + "1.1523318256", + "1.1763716232", + "1.1542625962", + "1.1147546042", + "1.117919015", + "1.142980907", + "1.1392720229", + "1.1150214062", + "1.1075640563", + "1.1099173156", + "1.1190948505", + "1.0448607536", + "1.0874638544", + "1.0717600837", + "1.0655983205", + "1.0593180757", + "1.0472154581", + "1.0503857975", + "1.0925578869", + "1.5269497181", + "1.6117279172", + "1.5242633421", + "1.50944563", + "1.4877729972", + "1.0414506561", + "1.0602550621", + "1.1101879272", + "1.0718271752", + "1.0870643782", + "1.2006015158", + "1.1543721229", + "1.1760237971", + "1.134690451", + "1.0480287625", + "1.0604111054", + "1.0669021766", + "1.1273287134", + "1.1185291808", + "1.1166104498", + "1.1426127309", + "1.1399202953", + "1.1311522397", + "1.1626728633", + "1.1707563278", + "1.1549450546", + "1.1283268048", + "1.1229812317", + "1.1283919076", + "1.1170987664", + "1.0620678716", + "1.0671526935", + "1.06639747", + "1.1132090545", + "1.0686387751", + "1.0510905767", + "1.1285153829", + "1.0817827431", + "1.0568652806", + "1.0699007718", + "1.0405162582", + "1.0057299", + "1.0898179358", + "1.0921717222", + "1.0969489319", + "1.1022945299", + "1.0679935041", + "1.1286492534", + "1.1354853688", + "1.1319963663", + "1.1446614317", + "1.1307453889", + "1.1105294827", + "1.101928714", + "1.1485805822", + "1.1678588549", + "1.2185378748", + "1.0614602586", + "1.0306329645", + "1.1236386784", + "1.1226219785", + "1.1098429028", + "1.0667676157", + "1.1315909299", + "1.1225341777", + "1.12518644", + "1.1563257453", + "1.0979846121", + "1.0832509093", + "1.064875781", + "1.0931914197", + "1.0646984944", + "1.1198444117", + "1.1508378117", + "1.1734706595", + "1.1301544825", + "1.101500694", + "1.1217475907", + "1.1015012023", + "1.0878872274", + "1.0526321565", + "1.087581716", + "1.0186712401", + "1.0359366111", + "1.1187453221", + "1.1071106613", + "1.104212235", + "1.1143665422", + "1.1227294277", + "1.1120520665", + "1.1239926341", + "1.1124591766", + "1.10999767", + "1.0784085384", + "1.0844034442", + "1.0906614414", + "1.077815896", + "1.1113545329", + "1.0435837446", + "1.1020816849", + "1.0992264523", + "1.0894669848", + "1.0886921084", + "1.1148342332", + "1.0914429964", + "1.0611368584", + "0.975808759", + "0.9876133038", + "0.9886305797", + "0.9326538025", + "0.944780723", + "0.941492321", + "0.9228181219", + "0.9315000736", + "0.9274592867", + "0.9174961369", + "0.9432971635", + "0.9399858268", + "0.9033565485", + "0.9218949812", + "0.8796537222", + "0.882332661", + "0.8963230763", + "0.897824186", + "0.8844943409", + "0.8739729468", + "0.9007273791", + "0.886650432", + "0.8466441349", + "0.8540076705", + "1.023575234", + "0.8439087252", + "0.8484530795", + "0.8520568534", + "0.8480042452", + "0.8151222185", + "0.8449308933", + "0.8649901355", + "0.8669828592", + "0.8650652598", + "0.8483821708", + "0.8472222412", + "0.8129858314", + "0.8152616329", + "0.9411450264", + "0.9523393825", + "0.8386261582", + "0.84428357", + "0.8343548784", + "0.7984866978", + "0.8240950947", + "0.8148299802", + "0.8069652324", + "0.806111302", + "0.8136358579", + "0.8076283841", + "0.826697303", + "0.8206209862", + "0.832343337", + "0.8271105612", + "0.813894312", + "0.8019606103", + "0.8116213362", + "0.8074678519", + "0.8133701545", + "0.8054218097", + "0.780861274", + "0.7902742405", + "0.7841058251", + "0.8121370127", + "0.8098320651", + "0.3360131742", + "0.349844297", + "0.3625364077", + "0.3934553804", + "0.3970792793", + "0.3858661361", + "0.401916534", + "0.3824664462", + "0.3788897451", + "0.395806804", + "0.3856077958", + "0.3901665676", + "0.3982195893", + "0.3840047528", + "0.3758295462", + "0.4359205257", + "0.4123827524", + "0.4126997784", + "0.4133431923", + "0.4078505976", + "0.3979559735", + "0.4581330499", + "0.429041917", + "0.351284683", + "0.3700997024", + "0.3898654606", + "0.3659751509", + "0.3476785256", + "0.3291486397", + "0.3454538312", + "0.3528102314", + "0.3352084084", + "0.0", + "0.1495401945", + "0.153257852", + "0.3700740146", + "0.3240856326", + "0.3497614403", + "0.3524659335", + "0.3353474954", + "0.6546733439", + "0.6656620325", + "0.599733323", + "0.6010101994", + "0.5591933515", + "0.5756125225", + "0.5739961884", + "0.5977353178", + "0.5851598566", + "0.5629570369", + "0.7441480426", + "0.7504473782", + "0.7304490728", + "0.7429775187", + "0.741503521", + "0.7099053112", + "0.7197044507", + "0.7686330007", + "0.8040571638", + "0.7788699845", + "0.7595581823", + "0.7084121071", + "0.7202107078", + "0.7199041576", + "0.750720053", + "0.7510777488", + "0.6837952277", + "0.8215678341", + "0.8261514753", + "0.8358950513", + "0.8156565954", + "0.7773519152", + "0.846745412", + "0.8277090885", + "0.8325707767", + "0.7693589303", + "0.8010710437", + "0.8097071024", + "0.8213648566", + "0.8038003171", + "0.7904360015", + "0.7548030199", + "0.7538886475", + "0.7603553373", + "0.83619362", + "0.8163101323", + "0.8916930307", + "0.8457034776", + "0.8000459009", + "0.8062509378", + "0.8111912272", + "0.8058825685", + "0.8000809675", + "0.8275212365", + "0.8096647727", + "0.8016152791", + "0.7926023121", + "0.8145397891", + "0.8090379443", + "0.8106718363", + "0.7746217452", + "0.7767782166", + "0.7499040037", + "0.8331676942", + "0.8089059179", + "0.7942641043", + "0.7745327584", + "0.9102564491", + "0.9135162574", + "0.9414232387", + "0.8960590597", + "0.9001623757", + "0.9142108552", + "0.927927321", + "0.9515665422", + "0.8927618505", + "0.8707756826", + "0.8993819151", + "0.8676325705", + "0.8709463958", + "0.8839136426", + "0.8642682777", + "0.8715306219", + "0.857165769", + "0.8530773401", + "0.9348209728", + "0.9270124384", + "0.8813316289", + "0.9020985916", + "0.8987793209", + "0.9519886804", + "0.8793870347", + "0.8635982578", + "0.8812307847", + "0.8820539004", + "0.8834837626", + "0.9089047326", + "0.920829382", + "0.9792934022", + "0.9826797964", + "0.9657254739", + "0.9509576116", + "0.9317314787", + "0.9008655994", + "1.2621476612", + "1.2865881377", + "1.2504328592", + "1.2610834639", + "1.2383279294", + "1.2245763085", + "1.314924694", + "1.3437688791", + "1.3448868013", + "1.2691559367", + "1.2666880614", + "1.266754777", + "1.2605448828", + "1.2786320914", + "1.2546492356", + "1.2305014051", + "1.1932982952", + "1.2014412928", + "1.1796227142", + "1.2003543637", + "1.1586387934", + "1.1731263263", + "1.1747787525", + "1.1803945935", + "1.1729017781", + "1.172436379", + "1.1696972311", + "1.159999604", + "1.1777068263", + "1.1578531907", + "1.1603003416", + "1.1560405072", + "1.1706989542", + "1.1897990563", + "1.1330969376", + "1.1554977118", + "1.1635353426", + "1.162677433", + "1.1459340876", + "1.1351562481", + "1.1352874058", + "1.1399800534", + "1.1432968272", + "1.1760174392", + "1.2072195277", + "1.2021475498", + "1.1260892793", + "1.1269805643", + "1.1222322526", + "1.1282815027", + "1.0493131847", + "0.9462698676", + "0.9599023806", + "1.1991294823", + "1.4069801081", + "1.1606206712", + "1.2211359567", + "1.2225279057", + "1.1983912983", + "1.2060698015", + "1.2287901925", + "1.2185917246", + "1.2360008206", + "1.237154882", + "1.233717552", + "1.2333785936", + "1.2601630659", + "1.2301205482", + "1.2337598267", + "1.2375844082", + "1.237803942", + "1.2011565776", + "1.2060328928", + "1.2270789329", + "1.2075311199", + "1.214871867", + "1.1667832816", + "1.1592313759", + "1.1899439569", + "1.1861197099", + "1.1984688021", + "1.2033264379", + "1.1979710836", + "1.1975345134", + "1.1885856422", + "1.2006020624", + "1.1782513211", + "1.1941998397", + "1.2029125788", + "1.1986272969", + "1.2068248633", + "1.2220810848", + "1.2175504323", + "1.1586447283", + "1.1963952385", + "1.1868966351", + "1.1489907064", + "1.4191660339", + "1.4518026917", + "1.4172792524", + "1.4259581059", + "1.3998485621", + "1.2136387222", + "1.0669089503", + "1.058941525", + "1.1122766361", + "1.0755487214", + "1.0805892125", + "1.0783586144", + "1.0660121937", + "1.0709547948", + "1.0242045103", + "1.0794999864", + "1.0738622351", + "1.119347658", + "1.0974428362", + "1.0897976", + "1.077127726", + "0.9900165907", + "0.9939342068", + "1.102088932", + "1.0846449357", + "1.0885922482", + "1.0834045972", + "1.0559884644", + "1.1450638294", + "1.0926333955", + "1.0926797704", + "1.1897286403", + "1.2202756031", + "1.1756874168", + "1.1826797882", + "1.1554434434", + "1.1608312416", + "1.1599983637", + "1.1521650481", + "1.0947856662", + "1.2433994185", + "1.297564386", + "1.2645873093", + "1.2537857084", + "1.261091623", + "1.2016867844", + "1.2142876153", + "1.2213452283", + "1.216583196", + "1.2659462375", + "1.2719331097", + "1.2813319588", + "1.293423339", + "1.228599379", + "1.2703881001", + "1.2685196838", + "1.1949341216", + "1.1930618506", + "1.2212576243", + "1.2143609934", + "1.2661797447", + "1.1698556335", + "1.1151849751", + "1.132998706", + "1.0957433102", + "1.1281430377", + "1.2113737985", + "1.2246161547", + "1.2395323821", + "1.2547687893", + "1.1685373848", + "1.1009264339", + "1.1613091518", + "1.2340134461", + "1.0798479409", + "1.108706543", + "1.1148287916", + "1.1716181635", + "1.1249482816", + "1.1314619274", + "1.1362442734", + "1.1174929127", + "1.1437394596", + "1.2110171616", + "1.2175713258", + "1.2453568408", + "1.258359831", + "1.254980131", + "1.1336170506", + "1.1606613577", + "1.1239504022", + "1.1293676207", + "1.1813522326", + "1.2136654539", + "1.2056008323", + "1.2140162957", + "1.201110953", + "1.188217867", + "1.192764355", + "1.2463896469", + "1.3017754683", + "1.3985327895", + "1.3116572074", + "1.3110269025", + "1.3388526542", + "1.2762402945", + "1.3430864138", + "1.3381324873", + "1.3031073866", + "1.3123708523", + "1.2076569712", + "1.4992140365", + "1.4253687278", + "1.4345577482", + "1.3620673759", + "1.3743582175", + "1.363973118", + "1.4661767271", + "1.3934083649", + "1.4315959798", + "1.425678854", + "1.403563336", + "1.3327905495", + "1.335535393", + "1.3801939431", + "1.3739547015", + "1.3785435021", + "1.3439419143", + "1.3355228898", + "1.3274860484", + "1.3871351699", + "1.345963814", + "1.3536325164", + "1.3241533452", + "1.2769002649", + "1.3804629172", + "1.3185470283", + "1.3116803836", + "1.3319086155", + "1.4080528731", + "1.4203244317", + "1.4289132949", + "1.4240255263", + "1.4178207999", + "1.4076610051", + "1.4066791163", + "1.4000260344", + "1.5182209119", + "1.499104187", + "1.3730393069", + "1.4223246499", + "1.422251968", + "1.4158927396", + "1.4184055101", + "1.4844880102", + "1.4790379878", + "1.4339164484", + "1.4198811048", + "1.4172282027", + "1.4057321187", + "1.4244655124", + "1.3929418882", + "1.3838977379", + "1.379736178", + "1.3952968719", + "1.3907671828", + "1.3816652351", + "1.3882351495", + "1.4029104633", + "1.4176610358", + "1.4265954026", + "1.4530600903", + "1.4045906978", + "1.4286024655", + "1.4395274891", + "1.3832158437", + "1.4375355828", + "1.4124677305", + "1.3884051414", + "1.3879063706", + "1.3955996877", + "1.389564578", + "1.3626966549", + "1.370641713", + "1.3737839224", + "1.3450642069" + ] + }, + "essential_compounds": [ + "4hbz", + "ac", + "acald", + "acgam", + "actn_R", + "ade", + "adocbl", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arg_L", + "arsenb", + "asn_L", + "asp_L", + "btn", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "chols", + "chtbs", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "ddca", + "drib", + "etha", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "gal", + "galt", + "gbbtn", + "glc_D", + "glcn", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "h2", + "h2o", + "h", + "hdca", + "hg2", + "his_L", + "hxan", + "ile_L", + "k", + "kesto", + "kestopt", + "kestottr", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "o2", + "ocdca", + "orn", + "pb", + "phe_L", + "pi", + "ppi", + "pro_L", + "ptrc", + "pydx", + "pyr", + "rib_D", + "ribflv", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "so4", + "spmd", + "succ", + "sucr", + "thm", + "thr_L", + "tre", + "trp_L", + "ttdca", + "tyr_L", + "ura", + "urea", + "val_L", + "xan", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_425.json b/agents/agora/agent_425.json new file mode 100644 index 0000000000000000000000000000000000000000..5568b2527fb3e8ef5108eba4064f4e95e67282e0 --- /dev/null +++ b/agents/agora/agent_425.json @@ -0,0 +1,980 @@ +{ + "id": 425, + "name": "Fusobacterium_sp_4_8", + "N_R": 995, + "taxonomy": { + "k": 425, + "tax_distance": [ + "2.5261261881", + "2.1082483208", + "2.1015490917", + "2.3281317988", + "2.0095317249", + "2.0546604118", + "2.035955114", + "2.0330125197", + "2.096994118", + "2.0153500261", + "2.0324147295", + "2.1405370433", + "2.1135548216", + "2.3415687795", + "2.3899255966", + "2.4202581072", + "2.3006077093", + "2.3095318261", + "2.3450063017", + "1.8779906177", + "1.813319641", + "1.5627983823", + "1.4961479499", + "1.3746682732", + "1.2004889944", + "1.1946777863", + "1.1913232149", + "1.1936842693", + "1.1779179793", + "1.1692322164", + "1.1716831225", + "1.2732690586", + "1.2828068614", + "1.2791729514", + "1.29486902", + "1.26336744", + "1.2861133841", + "1.3044192956", + "1.2853873326", + "1.5783279916", + "1.3231696129", + "1.2418085569", + "1.2485738631", + "1.2511814432", + "1.2479497012", + "1.2509230829", + "1.246024478", + "1.2464095133", + "1.2405946025", + "1.2326334129", + "1.1742112349", + "1.1797236349", + "1.1739828016", + "1.146136531", + "1.1526582751", + "1.1817602723", + "1.1556833855", + "1.1536673579", + "1.1744217635", + "1.1720818688", + "1.1553400413", + "1.1806908129", + "1.1827656027", + "1.1814347095", + "1.195825927", + "1.1975480889", + "1.1975480889", + "1.2041936716", + "1.2041936716", + "1.2041936716", + "1.2041936716", + "1.2041936716", + "1.2041936716", + "1.2041936716", + "1.2041936716", + "1.2001143089", + "1.2004600461", + "1.1940283385", + "1.2045208131", + "1.2036155712", + "1.1997174016", + "1.197974728", + "1.1992932978", + "1.1957914173", + "1.190713669", + "1.1940587946", + "1.1995045614", + "1.1949663697", + "1.1799664136", + "1.1883375285", + "1.1830621433", + "1.1992100843", + "1.1945127951", + "1.1986463644", + "1.1766066538", + "1.17120647", + "1.1852728251", + "1.1959332341", + "1.2127302771", + "1.1951399869", + "1.1851448684", + "1.1838270508", + "1.1645766709", + "1.1774551599", + "1.2363276049", + "1.2311756932", + "1.2980719505", + "1.2642326945", + "1.2014240537", + "1.2051503105", + "1.2078837776", + "1.2007796961", + "1.2007796961", + "1.1821557939", + "1.1850599402", + "1.1769594235", + "1.2124851222", + "1.1492625727", + "1.1271716593", + "1.1450360156", + "1.1317650203", + "1.1321906127", + "1.2504423263", + "1.2576327771", + "1.27907379", + "1.0836700743", + "1.2534190276", + "1.2600942617", + "1.2447311694", + "1.2643651746", + "1.2535522606", + "1.2586187469", + "1.2501224693", + "1.2431723642", + "1.2340426671", + "1.2347007875", + "1.2536147107", + "1.2267332668", + "1.2087690563", + "1.3026569972", + "1.3040308709", + "1.2733424586", + "1.3309221492", + "1.2685007367", + "1.2739946795", + "1.2710336544", + "1.2957406395", + "1.2849181907", + "1.1930751187", + "1.1641650292", + "1.1253539692", + "1.103252676", + "1.0946108697", + "1.0894906786", + "1.1263623043", + "1.1288574302", + "1.1006693613", + "1.0890314074", + "1.0926179164", + "1.1615710272", + "1.1682794093", + "1.1379084627", + "1.2618265359", + "1.2563116405", + "1.2586526917", + "1.2163757655", + "1.212521786", + "1.2504283597", + "1.2422515454", + "1.2110095229", + "1.2125688816", + "1.2305888753", + "1.1872840806", + "1.1764479516", + "1.1776085041", + "1.2110948455", + "1.1992712928", + "1.1806444356", + "1.1996330579", + "1.1809650592", + "1.1947800014", + "1.1889974304", + "1.1879290484", + "1.2084875001", + "1.2042749527", + "1.1871559073", + "1.2213842813", + "1.2061500396", + "1.2112623486", + "1.2106556631", + "1.1750540327", + "1.1710338245", + "1.1555664729", + "1.1739129781", + "1.1708466033", + "1.1451550095", + "1.1281422616", + "1.1228346107", + "1.1275763953", + "1.1267177846", + "1.1594837445", + "1.1585030827", + "1.1825428803", + "1.1604338533", + "1.1209258613", + "1.1240902721", + "1.1491521641", + "1.14544328", + "1.1211926633", + "1.1137353134", + "1.1160885727", + "1.1252661076", + "1.0510320107", + "1.0936351115", + "1.0779313408", + "1.0717695776", + "1.0654893328", + "1.0533867152", + "1.0565570546", + "1.098729144", + "1.5331209752", + "1.6178991743", + "1.5304345992", + "1.5156168871", + "1.4939442543", + "1.0476219132", + "1.0664263192", + "1.1163591843", + "1.0779984323", + "1.0932356353", + "1.2067727729", + "1.16054338", + "1.1821950542", + "1.1408617081", + "1.0542000196", + "1.0665823625", + "1.0730734337", + "1.1334999705", + "1.1247004379", + "1.1227817069", + "1.148783988", + "1.1460915524", + "1.1373234968", + "1.1688441204", + "1.1769275849", + "1.1611163117", + "1.1344980619", + "1.1291524888", + "1.1345631647", + "1.1232700235", + "1.0682391287", + "1.0733239506", + "1.0725687271", + "1.1193803116", + "1.0748100322", + "1.0572618338", + "1.13468664", + "1.0879540002", + "1.0630365377", + "1.0760720289", + "1.0466875153", + "1.0119011571", + "1.0959891929", + "1.0983429793", + "1.103120189", + "1.108465787", + "1.0741647612", + "1.1348205105", + "1.1416566259", + "1.1381676234", + "1.1508326888", + "1.136916646", + "1.1167007398", + "1.1080999711", + "1.1547518393", + "1.174030112", + "1.2247091319", + "1.0676315157", + "1.0368042216", + "1.1298099355", + "1.1287932356", + "1.1160141599", + "1.0729388728", + "1.137762187", + "1.1287054348", + "1.1313576971", + "1.1624970024", + "1.1041558692", + "1.0894221664", + "1.0710470381", + "1.0993626768", + "1.0708697515", + "1.1260156688", + "1.1570090688", + "1.1796419166", + "1.1363257396", + "1.1076719511", + "1.1279188478", + "1.1076724594", + "1.0940584845", + "1.0588034136", + "1.0937529731", + "1.0248424972", + "1.0421078682", + "1.1249165792", + "1.1132819184", + "1.1103834921", + "1.1205377993", + "1.1289006848", + "1.1182233236", + "1.1301638912", + "1.1186304337", + "1.1161689271", + "1.0845797955", + "1.0905747013", + "1.0968326985", + "1.0839871531", + "1.11752579", + "1.0497550017", + "1.108252942", + "1.1053977094", + "1.0956382419", + "1.0948633655", + "1.1210054903", + "1.0976142535", + "1.0673081155", + "0.9819800161", + "0.9937845609", + "0.9948018368", + "0.9388250596", + "0.9509519801", + "0.9476635781", + "0.928989379", + "0.9376713307", + "0.9336305438", + "0.923667394", + "0.9494684206", + "0.9461570839", + "0.9095278056", + "0.9280662383", + "0.8858249793", + "0.8885039181", + "0.9024943334", + "0.9039954431", + "0.890665598", + "0.8801442039", + "0.9068986362", + "0.8928216891", + "0.852815392", + "0.8601789276", + "1.0297464911", + "0.8500799823", + "0.8546243366", + "0.8582281105", + "0.8541755023", + "0.8212934756", + "0.8511021504", + "0.8711613926", + "0.8731541163", + "0.8712365169", + "0.8545534279", + "0.8533934983", + "0.8191570885", + "0.82143289", + "0.9473162835", + "0.9585106396", + "0.8447974153", + "0.8504548271", + "0.8405261355", + "0.8046579549", + "0.8302663518", + "0.8210012373", + "0.8131364895", + "0.8122825591", + "0.819807115", + "0.8137996412", + "0.8328685601", + "0.8267922433", + "0.8385145941", + "0.8332818183", + "0.8200655691", + "0.8081318674", + "0.8177925933", + "0.813639109", + "0.8195414116", + "0.8115930668", + "0.7870325311", + "0.7964454976", + "0.7902770822", + "0.8183082698", + "0.8160033222", + "0.3421844313", + "0.3560155541", + "0.3687076648", + "0.3996266375", + "0.4032505364", + "0.3920373932", + "0.4080877911", + "0.3886377033", + "0.3850610022", + "0.4019780611", + "0.3917790529", + "0.3963378247", + "0.4043908464", + "0.3901760099", + "0.3820008033", + "0.4420917828", + "0.4185540095", + "0.4188710355", + "0.4195144494", + "0.4140218547", + "0.4041272306", + "0.464304307", + "0.4352131741", + "0.3574559401", + "0.3762709595", + "0.3960367177", + "0.372146408", + "0.3538497827", + "0.3353198968", + "0.3516250883", + "0.3589814885", + "0.3413796655", + "0.1495401945", + "0.0", + "0.0502915471", + "0.3762452717", + "0.3302568897", + "0.3559326974", + "0.3586371906", + "0.3415187525", + "0.660844601", + "0.6718332896", + "0.6059045801", + "0.6071814565", + "0.5653646086", + "0.5817837796", + "0.5801674455", + "0.6039065749", + "0.5913311137", + "0.569128294", + "0.7503192997", + "0.7566186353", + "0.7366203299", + "0.7491487758", + "0.7476747781", + "0.7160765683", + "0.7258757078", + "0.7748042578", + "0.8102284209", + "0.7850412416", + "0.7657294394", + "0.7145833642", + "0.7263819649", + "0.7260754147", + "0.7568913101", + "0.7572490059", + "0.6899664848", + "0.8277390912", + "0.8323227324", + "0.8420663084", + "0.8218278525", + "0.7835231723", + "0.8529166691", + "0.8338803456", + "0.8387420338", + "0.7755301874", + "0.8072423008", + "0.8158783595", + "0.8275361137", + "0.8099715742", + "0.7966072586", + "0.760974277", + "0.7600599046", + "0.7665265944", + "0.8423648771", + "0.8224813894", + "0.8978642878", + "0.8518747347", + "0.806217158", + "0.8124221949", + "0.8173624843", + "0.8120538256", + "0.8062522246", + "0.8336924936", + "0.8158360298", + "0.8077865362", + "0.7987735692", + "0.8207110462", + "0.8152092014", + "0.8168430934", + "0.7807930023", + "0.7829494737", + "0.7560752608", + "0.8393389513", + "0.815077175", + "0.8004353614", + "0.7807040155", + "0.9164277062", + "0.9196875145", + "0.9475944958", + "0.9022303168", + "0.9063336328", + "0.9203821123", + "0.9340985781", + "0.9577377993", + "0.8989331076", + "0.8769469397", + "0.9055531722", + "0.8738038276", + "0.8771176529", + "0.8900848997", + "0.8704395348", + "0.877701879", + "0.8633370261", + "0.8592485972", + "0.9409922299", + "0.9331836955", + "0.887502886", + "0.9082698487", + "0.904950578", + "0.9581599375", + "0.8855582918", + "0.8697695149", + "0.8874020418", + "0.8882251575", + "0.8896550197", + "0.9150759897", + "0.9270006391", + "0.9854646593", + "0.9888510535", + "0.971896731", + "0.9571288687", + "0.9379027358", + "0.9070368565", + "1.2683189183", + "1.2927593948", + "1.2566041163", + "1.267254721", + "1.2444991865", + "1.2307475656", + "1.3210959511", + "1.3499401362", + "1.3510580584", + "1.2753271938", + "1.2728593185", + "1.2729260341", + "1.2667161399", + "1.2848033485", + "1.2608204927", + "1.2366726622", + "1.1994695523", + "1.2076125499", + "1.1857939713", + "1.2065256208", + "1.1648100505", + "1.1792975834", + "1.1809500096", + "1.1865658506", + "1.1790730352", + "1.1786076361", + "1.1758684882", + "1.1661708611", + "1.1838780834", + "1.1640244478", + "1.1664715987", + "1.1622117643", + "1.1768702113", + "1.1959703134", + "1.1392681947", + "1.1616689689", + "1.1697065997", + "1.1688486901", + "1.1521053447", + "1.1413275052", + "1.1414586629", + "1.1461513105", + "1.1494680843", + "1.1821886963", + "1.2133907848", + "1.2083188069", + "1.1322605364", + "1.1331518214", + "1.1284035097", + "1.1344527598", + "1.0554844418", + "0.9524411247", + "0.9660736377", + "1.2053007394", + "1.4131513652", + "1.1667919283", + "1.2273072138", + "1.2286991628", + "1.2045625554", + "1.2122410586", + "1.2349614496", + "1.2247629817", + "1.2421720777", + "1.2433261391", + "1.2398888091", + "1.2395498507", + "1.266334323", + "1.2362918053", + "1.2399310838", + "1.2437556653", + "1.2439751991", + "1.2073278347", + "1.2122041499", + "1.23325019", + "1.213702377", + "1.2210431241", + "1.1729545387", + "1.165402633", + "1.196115214", + "1.192290967", + "1.2046400592", + "1.209497695", + "1.2041423407", + "1.2037057705", + "1.1947568993", + "1.2067733195", + "1.1844225782", + "1.2003710968", + "1.2090838359", + "1.204798554", + "1.2129961204", + "1.2282523419", + "1.2237216894", + "1.1648159854", + "1.2025664956", + "1.1930678922", + "1.1551619635", + "1.425337291", + "1.4579739488", + "1.4234505095", + "1.432129363", + "1.4060198192", + "1.2198099793", + "1.0730802074", + "1.0651127821", + "1.1184478932", + "1.0817199785", + "1.0867604696", + "1.0845298715", + "1.0721834508", + "1.0771260519", + "1.0303757674", + "1.0856712435", + "1.0800334922", + "1.1255189151", + "1.1036140933", + "1.0959688571", + "1.0832989831", + "0.9961878478", + "1.0001054639", + "1.1082601891", + "1.0908161928", + "1.0947635053", + "1.0895758543", + "1.0621597215", + "1.1512350865", + "1.0988046526", + "1.0988510275", + "1.1958998974", + "1.2264468602", + "1.1818586739", + "1.1888510453", + "1.1616147005", + "1.1670024987", + "1.1661696208", + "1.1583363052", + "1.1009569233", + "1.2495706756", + "1.3037356431", + "1.2707585664", + "1.2599569655", + "1.2672628801", + "1.2078580415", + "1.2204588724", + "1.2275164854", + "1.2227544531", + "1.2721174946", + "1.2781043668", + "1.2875032159", + "1.2995945961", + "1.2347706361", + "1.2765593572", + "1.2746909409", + "1.2011053787", + "1.1992331077", + "1.2274288814", + "1.2205322505", + "1.2723510018", + "1.1760268906", + "1.1213562322", + "1.1391699631", + "1.1019145673", + "1.1343142948", + "1.2175450556", + "1.2307874118", + "1.2457036392", + "1.2609400464", + "1.1747086419", + "1.107097691", + "1.1674804089", + "1.2401847032", + "1.086019198", + "1.1148778001", + "1.1210000487", + "1.1777894206", + "1.1311195387", + "1.1376331845", + "1.1424155305", + "1.1236641698", + "1.1499107167", + "1.2171884187", + "1.2237425829", + "1.2515280979", + "1.2645310881", + "1.2611513881", + "1.1397883077", + "1.1668326148", + "1.1301216593", + "1.1355388778", + "1.1875234897", + "1.219836711", + "1.2117720894", + "1.2201875528", + "1.2072822101", + "1.1943891241", + "1.1989356121", + "1.252560904", + "1.3079467254", + "1.4047040466", + "1.3178284645", + "1.3171981596", + "1.3450239113", + "1.2824115516", + "1.3492576709", + "1.3443037444", + "1.3092786437", + "1.3185421094", + "1.2138282283", + "1.5053852936", + "1.4315399849", + "1.4407290053", + "1.368238633", + "1.3805294746", + "1.3701443751", + "1.4723479842", + "1.399579622", + "1.4377672369", + "1.4318501111", + "1.4097345931", + "1.3389618066", + "1.3417066501", + "1.3863652002", + "1.3801259586", + "1.3847147592", + "1.3501131714", + "1.3416941469", + "1.3336573055", + "1.393306427", + "1.3521350711", + "1.3598037735", + "1.3303246023", + "1.283071522", + "1.3866341743", + "1.3247182854", + "1.3178516407", + "1.3380798726", + "1.4142241302", + "1.4264956888", + "1.435084552", + "1.4301967834", + "1.423992057", + "1.4138322622", + "1.4128503734", + "1.4061972915", + "1.524392169", + "1.5052754441", + "1.379210564", + "1.428495907", + "1.4284232251", + "1.4220639967", + "1.4245767672", + "1.4906592673", + "1.4852092449", + "1.4400877055", + "1.4260523619", + "1.4233994598", + "1.4119033758", + "1.4306367695", + "1.3991131453", + "1.390068995", + "1.3859074351", + "1.401468129", + "1.3969384399", + "1.3878364922", + "1.3944064066", + "1.4090817204", + "1.4238322929", + "1.4327666597", + "1.4592313474", + "1.4107619549", + "1.4347737226", + "1.4456987462", + "1.3893871008", + "1.4437068399", + "1.4186389876", + "1.3945763985", + "1.3940776277", + "1.4017709448", + "1.3957358351", + "1.368867912", + "1.3768129701", + "1.3799551795", + "1.351235464" + ] + }, + "essential_compounds": [ + "12dgr180", + "2obut", + "4hbz", + "C02528", + "ac", + "acald", + "acgam", + "actn_R", + "ade", + "adocbl", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arg_L", + "arsenb", + "asn_L", + "asp_L", + "btn", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cholate", + "chols", + "chtbs", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "ddca", + "dgchol", + "drib", + "etha", + "etoh", + "fe2", + "fe3", + "fecrm", + "fol", + "for", + "fru", + "gal", + "galt", + "gam", + "gbbtn", + "gchola", + "glc_D", + "glcn", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "h2o", + "h", + "hdca", + "hg2", + "his_L", + "hxan", + "ile_L", + "k", + "kesto", + "kestopt", + "kestottr", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "o2", + "ocdca", + "orn", + "pb", + "phe_L", + "pi", + "ppi", + "pro_L", + "ptrc", + "pydx", + "pyr", + "q8", + "rib_D", + "ribflv", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "sheme", + "so4", + "spmd", + "succ", + "sucr", + "taur", + "tchola", + "tdchola", + "thm", + "thr_L", + "tre", + "trp_L", + "ttdca", + "tyr_L", + "ura", + "val_L", + "xan", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_426.json b/agents/agora/agent_426.json new file mode 100644 index 0000000000000000000000000000000000000000..478d609ffbdec31c71391547f0b1c719099d1fec --- /dev/null +++ b/agents/agora/agent_426.json @@ -0,0 +1,971 @@ +{ + "id": 426, + "name": "Fusobacterium_ulcerans_ATCC_49185", + "N_R": 809, + "taxonomy": { + "k": 426, + "tax_distance": [ + "2.5298438456", + "2.1119659783", + "2.1052667492", + "2.3318494563", + "2.0132493824", + "2.0583780693", + "2.0396727715", + "2.0367301772", + "2.1007117755", + "2.0190676836", + "2.036132387", + "2.1442547008", + "2.1172724791", + "2.345286437", + "2.3936432541", + "2.4239757647", + "2.3043253668", + "2.3132494836", + "2.3487239592", + "1.8817082752", + "1.8170372985", + "1.5665160398", + "1.4998656074", + "1.3783859307", + "1.2042066519", + "1.1983954438", + "1.1950408724", + "1.1974019268", + "1.1816356368", + "1.1729498739", + "1.17540078", + "1.2769867161", + "1.2865245189", + "1.2828906089", + "1.2985866775", + "1.2670850975", + "1.2898310416", + "1.3081369531", + "1.2891049901", + "1.5820456491", + "1.3268872704", + "1.2455262144", + "1.2522915206", + "1.2548991007", + "1.2516673587", + "1.2546407404", + "1.2497421355", + "1.2501271708", + "1.24431226", + "1.2363510704", + "1.1779288924", + "1.1834412924", + "1.1777004591", + "1.1498541885", + "1.1563759326", + "1.1854779298", + "1.159401043", + "1.1573850154", + "1.178139421", + "1.1757995263", + "1.1590576988", + "1.1844084704", + "1.1864832602", + "1.185152367", + "1.1995435845", + "1.2012657464", + "1.2012657464", + "1.2079113291", + "1.2079113291", + "1.2079113291", + "1.2079113291", + "1.2079113291", + "1.2079113291", + "1.2079113291", + "1.2079113291", + "1.2038319664", + "1.2041777036", + "1.197745996", + "1.2082384706", + "1.2073332287", + "1.2034350591", + "1.2016923855", + "1.2030109553", + "1.1995090748", + "1.1944313265", + "1.1977764521", + "1.2032222189", + "1.1986840272", + "1.1836840711", + "1.192055186", + "1.1867798008", + "1.2029277418", + "1.1982304526", + "1.2023640219", + "1.1803243113", + "1.1749241275", + "1.1889904826", + "1.1996508916", + "1.2164479346", + "1.1988576444", + "1.1888625259", + "1.1875447083", + "1.1682943284", + "1.1811728174", + "1.2400452624", + "1.2348933507", + "1.301789608", + "1.267950352", + "1.2051417112", + "1.208867968", + "1.2116014351", + "1.2044973536", + "1.2044973536", + "1.1858734514", + "1.1887775977", + "1.180677081", + "1.2162027797", + "1.1529802302", + "1.1308893168", + "1.1487536731", + "1.1354826778", + "1.1359082702", + "1.2541599838", + "1.2613504346", + "1.2827914475", + "1.0873877318", + "1.2571366851", + "1.2638119192", + "1.2484488269", + "1.2680828321", + "1.2572699181", + "1.2623364044", + "1.2538401268", + "1.2468900217", + "1.2377603246", + "1.238418445", + "1.2573323682", + "1.2304509243", + "1.2124867138", + "1.3063746547", + "1.3077485284", + "1.2770601161", + "1.3346398067", + "1.2722183942", + "1.277712337", + "1.2747513119", + "1.299458297", + "1.2886358482", + "1.1967927762", + "1.1678826867", + "1.1290716267", + "1.1069703335", + "1.0983285272", + "1.0932083361", + "1.1300799618", + "1.1325750877", + "1.1043870188", + "1.0927490649", + "1.0963355739", + "1.1652886847", + "1.1719970668", + "1.1416261202", + "1.2655441934", + "1.260029298", + "1.2623703492", + "1.220093423", + "1.2162394435", + "1.2541460172", + "1.2459692029", + "1.2147271804", + "1.2162865391", + "1.2343065328", + "1.1910017381", + "1.1801656091", + "1.1813261616", + "1.214812503", + "1.2029889503", + "1.1843620931", + "1.2033507154", + "1.1846827167", + "1.1984976589", + "1.1927150879", + "1.1916467059", + "1.2122051576", + "1.2079926102", + "1.1908735648", + "1.2251019388", + "1.2098676971", + "1.2149800061", + "1.2143733206", + "1.1787716902", + "1.174751482", + "1.1592841304", + "1.1776306356", + "1.1745642608", + "1.148872667", + "1.1318599191", + "1.1265522682", + "1.1312940528", + "1.1304354421", + "1.163201402", + "1.1622207402", + "1.1862605378", + "1.1641515108", + "1.1246435188", + "1.1278079296", + "1.1528698216", + "1.1491609375", + "1.1249103208", + "1.1174529709", + "1.1198062302", + "1.1289837651", + "1.0547496682", + "1.097352769", + "1.0816489983", + "1.0754872351", + "1.0692069903", + "1.0571043727", + "1.0602747121", + "1.1024468015", + "1.5368386327", + "1.6216168318", + "1.5341522567", + "1.5193345446", + "1.4976619118", + "1.0513395707", + "1.0701439767", + "1.1200768418", + "1.0817160898", + "1.0969532928", + "1.2104904304", + "1.1642610375", + "1.1859127117", + "1.1445793656", + "1.0579176771", + "1.07030002", + "1.0767910912", + "1.137217628", + "1.1284180954", + "1.1264993644", + "1.1525016455", + "1.1498092099", + "1.1410411543", + "1.1725617779", + "1.1806452424", + "1.1648339692", + "1.1382157194", + "1.1328701463", + "1.1382808222", + "1.126987681", + "1.0719567862", + "1.0770416081", + "1.0762863846", + "1.1230979691", + "1.0785276897", + "1.0609794913", + "1.1384042975", + "1.0916716577", + "1.0667541952", + "1.0797896864", + "1.0504051728", + "1.0156188146", + "1.0997068504", + "1.1020606368", + "1.1068378465", + "1.1121834445", + "1.0778824187", + "1.138538168", + "1.1453742834", + "1.1418852809", + "1.1545503463", + "1.1406343035", + "1.1204183973", + "1.1118176286", + "1.1584694968", + "1.1777477695", + "1.2284267894", + "1.0713491732", + "1.0405218791", + "1.133527593", + "1.1325108931", + "1.1197318174", + "1.0766565303", + "1.1414798445", + "1.1324230923", + "1.1350753546", + "1.1662146599", + "1.1078735267", + "1.0931398239", + "1.0747646956", + "1.1030803343", + "1.074587409", + "1.1297333263", + "1.1607267263", + "1.1833595741", + "1.1400433971", + "1.1113896086", + "1.1316365053", + "1.1113901169", + "1.097776142", + "1.0625210711", + "1.0974706306", + "1.0285601547", + "1.0458255257", + "1.1286342367", + "1.1169995759", + "1.1141011496", + "1.1242554568", + "1.1326183423", + "1.1219409811", + "1.1338815487", + "1.1223480912", + "1.1198865846", + "1.088297453", + "1.0942923588", + "1.100550356", + "1.0877048106", + "1.1212434475", + "1.0534726592", + "1.1119705995", + "1.1091153669", + "1.0993558994", + "1.098581023", + "1.1247231478", + "1.101331911", + "1.071025773", + "0.9856976736", + "0.9975022184", + "0.9985194943", + "0.9425427171", + "0.9546696376", + "0.9513812356", + "0.9327070365", + "0.9413889882", + "0.9373482013", + "0.9273850515", + "0.9531860781", + "0.9498747414", + "0.9132454631", + "0.9317838958", + "0.8895426368", + "0.8922215756", + "0.9062119909", + "0.9077131006", + "0.8943832555", + "0.8838618614", + "0.9106162937", + "0.8965393466", + "0.8565330495", + "0.8638965851", + "1.0334641486", + "0.8537976398", + "0.8583419941", + "0.861945768", + "0.8578931598", + "0.8250111331", + "0.8548198079", + "0.8748790501", + "0.8768717738", + "0.8749541744", + "0.8582710854", + "0.8571111558", + "0.822874746", + "0.8251505475", + "0.951033941", + "0.9622282971", + "0.8485150728", + "0.8541724846", + "0.844243793", + "0.8083756124", + "0.8339840093", + "0.8247188948", + "0.816854147", + "0.8160002166", + "0.8235247725", + "0.8175172987", + "0.8365862176", + "0.8305099008", + "0.8422322516", + "0.8369994758", + "0.8237832266", + "0.8118495249", + "0.8215102508", + "0.8173567665", + "0.8232590691", + "0.8153107243", + "0.7907501886", + "0.8001631551", + "0.7939947397", + "0.8220259273", + "0.8197209797", + "0.3459020888", + "0.3597332116", + "0.3724253223", + "0.403344295", + "0.4069681939", + "0.3957550507", + "0.4118054486", + "0.3923553608", + "0.3887786597", + "0.4056957186", + "0.3954967104", + "0.4000554822", + "0.4081085039", + "0.3938936674", + "0.3857184608", + "0.4458094403", + "0.422271667", + "0.422588693", + "0.4232321069", + "0.4177395122", + "0.4078448881", + "0.4680219645", + "0.4389308316", + "0.3611735976", + "0.379988617", + "0.3997543752", + "0.3758640655", + "0.3575674402", + "0.3390375543", + "0.3553427458", + "0.362699146", + "0.345097323", + "0.153257852", + "0.0502915471", + "0.0", + "0.3799629292", + "0.3339745472", + "0.3596503549", + "0.3623548481", + "0.34523641", + "0.6645622585", + "0.6755509471", + "0.6096222376", + "0.610899114", + "0.5690822661", + "0.5855014371", + "0.583885103", + "0.6076242324", + "0.5950487712", + "0.5728459515", + "0.7540369572", + "0.7603362928", + "0.7403379874", + "0.7528664333", + "0.7513924356", + "0.7197942258", + "0.7295933653", + "0.7785219153", + "0.8139460784", + "0.7887588991", + "0.7694470969", + "0.7183010217", + "0.7300996224", + "0.7297930722", + "0.7606089676", + "0.7609666634", + "0.6936841423", + "0.8314567487", + "0.8360403899", + "0.8457839659", + "0.82554551", + "0.7872408298", + "0.8566343266", + "0.8375980031", + "0.8424596913", + "0.7792478449", + "0.8109599583", + "0.819596017", + "0.8312537712", + "0.8136892317", + "0.8003249161", + "0.7646919345", + "0.7637775621", + "0.7702442519", + "0.8460825346", + "0.8261990469", + "0.9015819453", + "0.8555923922", + "0.8099348155", + "0.8161398524", + "0.8210801418", + "0.8157714831", + "0.8099698821", + "0.8374101511", + "0.8195536873", + "0.8115041937", + "0.8024912267", + "0.8244287037", + "0.8189268589", + "0.8205607509", + "0.7845106598", + "0.7866671312", + "0.7597929183", + "0.8430566088", + "0.8187948325", + "0.8041530189", + "0.784421673", + "0.9201453637", + "0.923405172", + "0.9513121533", + "0.9059479743", + "0.9100512903", + "0.9240997698", + "0.9378162356", + "0.9614554568", + "0.9026507651", + "0.8806645972", + "0.9092708297", + "0.8775214851", + "0.8808353104", + "0.8938025572", + "0.8741571923", + "0.8814195365", + "0.8670546836", + "0.8629662547", + "0.9447098874", + "0.936901353", + "0.8912205435", + "0.9119875062", + "0.9086682355", + "0.961877595", + "0.8892759493", + "0.8734871724", + "0.8911196993", + "0.891942815", + "0.8933726772", + "0.9187936472", + "0.9307182966", + "0.9891823168", + "0.992568711", + "0.9756143885", + "0.9608465262", + "0.9416203933", + "0.910754514", + "1.2720365758", + "1.2964770523", + "1.2603217738", + "1.2709723785", + "1.248216844", + "1.2344652231", + "1.3248136086", + "1.3536577937", + "1.3547757159", + "1.2790448513", + "1.276576976", + "1.2766436916", + "1.2704337974", + "1.288521006", + "1.2645381502", + "1.2403903197", + "1.2031872098", + "1.2113302074", + "1.1895116288", + "1.2102432783", + "1.168527708", + "1.1830152409", + "1.1846676671", + "1.1902835081", + "1.1827906927", + "1.1823252936", + "1.1795861457", + "1.1698885186", + "1.1875957409", + "1.1677421053", + "1.1701892562", + "1.1659294218", + "1.1805878688", + "1.1996879709", + "1.1429858522", + "1.1653866264", + "1.1734242572", + "1.1725663476", + "1.1558230022", + "1.1450451627", + "1.1451763204", + "1.149868968", + "1.1531857418", + "1.1859063538", + "1.2171084423", + "1.2120364644", + "1.1359781939", + "1.1368694789", + "1.1321211672", + "1.1381704173", + "1.0592020993", + "0.9561587822", + "0.9697912952", + "1.2090183969", + "1.4168690227", + "1.1705095858", + "1.2310248713", + "1.2324168203", + "1.2082802129", + "1.2159587161", + "1.2386791071", + "1.2284806392", + "1.2458897352", + "1.2470437966", + "1.2436064666", + "1.2432675082", + "1.2700519805", + "1.2400094628", + "1.2436487413", + "1.2474733228", + "1.2476928566", + "1.2110454922", + "1.2159218074", + "1.2369678475", + "1.2174200345", + "1.2247607816", + "1.1766721962", + "1.1691202905", + "1.1998328715", + "1.1960086245", + "1.2083577167", + "1.2132153525", + "1.2078599982", + "1.207423428", + "1.1984745568", + "1.210490977", + "1.1881402357", + "1.2040887543", + "1.2128014934", + "1.2085162115", + "1.2167137779", + "1.2319699994", + "1.2274393469", + "1.1685336429", + "1.2062841531", + "1.1967855497", + "1.158879621", + "1.4290549485", + "1.4616916063", + "1.427168167", + "1.4358470205", + "1.4097374767", + "1.2235276368", + "1.0767978649", + "1.0688304396", + "1.1221655507", + "1.085437636", + "1.0904781271", + "1.088247529", + "1.0759011083", + "1.0808437094", + "1.0340934249", + "1.089388901", + "1.0837511497", + "1.1292365726", + "1.1073317508", + "1.0996865146", + "1.0870166406", + "0.9999055053", + "1.0038231214", + "1.1119778466", + "1.0945338503", + "1.0984811628", + "1.0932935118", + "1.065877379", + "1.154952744", + "1.1025223101", + "1.102568685", + "1.1996175549", + "1.2301645177", + "1.1855763314", + "1.1925687028", + "1.165332358", + "1.1707201562", + "1.1698872783", + "1.1620539627", + "1.1046745808", + "1.2532883331", + "1.3074533006", + "1.2744762239", + "1.263674623", + "1.2709805376", + "1.211575699", + "1.2241765299", + "1.2312341429", + "1.2264721106", + "1.2758351521", + "1.2818220243", + "1.2912208734", + "1.3033122536", + "1.2384882936", + "1.2802770147", + "1.2784085984", + "1.2048230362", + "1.2029507652", + "1.2311465389", + "1.224249908", + "1.2760686593", + "1.1797445481", + "1.1250738897", + "1.1428876206", + "1.1056322248", + "1.1380319523", + "1.2212627131", + "1.2345050693", + "1.2494212967", + "1.2646577039", + "1.1784262994", + "1.1108153485", + "1.1711980664", + "1.2439023607", + "1.0897368555", + "1.1185954576", + "1.1247177062", + "1.1815070781", + "1.1348371962", + "1.141350842", + "1.146133188", + "1.1273818273", + "1.1536283742", + "1.2209060762", + "1.2274602404", + "1.2552457554", + "1.2682487456", + "1.2648690456", + "1.1435059652", + "1.1705502723", + "1.1338393168", + "1.1392565353", + "1.1912411472", + "1.2235543685", + "1.2154897469", + "1.2239052103", + "1.2109998676", + "1.1981067816", + "1.2026532696", + "1.2562785615", + "1.3116643829", + "1.4084217041", + "1.321546122", + "1.3209158171", + "1.3487415688", + "1.2861292091", + "1.3529753284", + "1.3480214019", + "1.3129963012", + "1.3222597669", + "1.2175458858", + "1.5091029511", + "1.4352576424", + "1.4444466628", + "1.3719562905", + "1.3842471321", + "1.3738620326", + "1.4760656417", + "1.4032972795", + "1.4414848944", + "1.4355677686", + "1.4134522506", + "1.3426794641", + "1.3454243076", + "1.3900828577", + "1.3838436161", + "1.3884324167", + "1.3538308289", + "1.3454118044", + "1.337374963", + "1.3970240845", + "1.3558527286", + "1.363521431", + "1.3340422598", + "1.2867891795", + "1.3903518318", + "1.3284359429", + "1.3215692982", + "1.3417975301", + "1.4179417877", + "1.4302133463", + "1.4388022095", + "1.4339144409", + "1.4277097145", + "1.4175499197", + "1.4165680309", + "1.409914949", + "1.5281098265", + "1.5089931016", + "1.3829282215", + "1.4322135645", + "1.4321408826", + "1.4257816542", + "1.4282944247", + "1.4943769248", + "1.4889269024", + "1.443805363", + "1.4297700194", + "1.4271171173", + "1.4156210333", + "1.434354427", + "1.4028308028", + "1.3937866525", + "1.3896250926", + "1.4051857865", + "1.4006560974", + "1.3915541497", + "1.3981240641", + "1.4127993779", + "1.4275499504", + "1.4364843172", + "1.4629490049", + "1.4144796124", + "1.4384913801", + "1.4494164037", + "1.3931047583", + "1.4474244974", + "1.4223566451", + "1.398294056", + "1.3977952852", + "1.4054886023", + "1.3994534926", + "1.3725855695", + "1.3805306276", + "1.383672837", + "1.3549531215" + ] + }, + "essential_compounds": [ + "4abut", + "C02528", + "ac", + "acald", + "acgam", + "actn_R", + "adn", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_L", + "arabttr", + "arbt", + "arg_L", + "arsenb", + "asn_L", + "asp_L", + "btn", + "ca2", + "cd2", + "cellb", + "cgly", + "chol", + "cholate", + "chols", + "cl", + "co2", + "cobalt2", + "crn", + "ctbt", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dextrin", + "dgchol", + "dgsn", + "din", + "drib", + "duri", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "gal", + "gbbtn", + "gchola", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "h2o", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "ins", + "k", + "kesto", + "kestopt", + "kestottr", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man", + "mantr", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "na1", + "nac", + "nh4", + "no2", + "o2", + "orn", + "pb", + "phe_L", + "pi", + "pnto_R", + "pro_L", + "ptrc", + "pydx", + "rib_D", + "ribflv", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "so4", + "spmd", + "stys", + "succ", + "sucr", + "taur", + "tchola", + "tdchola", + "thr_L", + "thymd", + "tre", + "trp_L", + "tyr_L", + "ura", + "urea", + "uri", + "val_L", + "xan", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_427.json b/agents/agora/agent_427.json new file mode 100644 index 0000000000000000000000000000000000000000..2930d54a0e0bfeb4e760d48ee9cb9a9e3d00fdbb --- /dev/null +++ b/agents/agora/agent_427.json @@ -0,0 +1,990 @@ +{ + "id": 427, + "name": "Fusobacterium_varium_ATCC_27725", + "N_R": 674, + "taxonomy": { + "k": 427, + "tax_distance": [ + "2.5651059372", + "2.1472280699", + "2.1405288408", + "2.3671115479", + "2.048511474", + "2.0936401609", + "2.0749348631", + "2.0719922688", + "2.1359738671", + "2.0543297752", + "2.0713944786", + "2.1795167924", + "2.1525345707", + "2.3805485286", + "2.4289053457", + "2.4592378563", + "2.3395874584", + "2.3485115752", + "2.3839860508", + "1.9169703668", + "1.8522993901", + "1.6017781314", + "1.535127699", + "1.4136480223", + "1.2394687435", + "1.2336575354", + "1.230302964", + "1.2326640184", + "1.2168977284", + "1.2082119655", + "1.2106628716", + "1.3122488077", + "1.3217866105", + "1.3181527005", + "1.3338487691", + "1.3023471891", + "1.3250931332", + "1.3433990447", + "1.3243670817", + "1.6173077407", + "1.362149362", + "1.280788306", + "1.2875536122", + "1.2901611923", + "1.2869294503", + "1.289902832", + "1.2850042271", + "1.2853892624", + "1.2795743516", + "1.271613162", + "1.213190984", + "1.218703384", + "1.2129625507", + "1.1851162801", + "1.1916380242", + "1.2207400214", + "1.1946631346", + "1.192647107", + "1.2134015126", + "1.2110616179", + "1.1943197904", + "1.219670562", + "1.2217453518", + "1.2204144586", + "1.2348056761", + "1.236527838", + "1.236527838", + "1.2431734207", + "1.2431734207", + "1.2431734207", + "1.2431734207", + "1.2431734207", + "1.2431734207", + "1.2431734207", + "1.2431734207", + "1.239094058", + "1.2394397952", + "1.2330080876", + "1.2435005622", + "1.2425953203", + "1.2386971507", + "1.2369544771", + "1.2382730469", + "1.2347711664", + "1.2296934181", + "1.2330385437", + "1.2384843105", + "1.2339461188", + "1.2189461627", + "1.2273172776", + "1.2220418924", + "1.2381898334", + "1.2334925442", + "1.2376261135", + "1.2155864029", + "1.2101862191", + "1.2242525742", + "1.2349129832", + "1.2517100262", + "1.234119736", + "1.2241246175", + "1.2228067999", + "1.20355642", + "1.216434909", + "1.275307354", + "1.2701554423", + "1.3370516996", + "1.3032124436", + "1.2404038028", + "1.2441300596", + "1.2468635267", + "1.2397594452", + "1.2397594452", + "1.221135543", + "1.2240396893", + "1.2159391726", + "1.2514648713", + "1.1882423218", + "1.1661514084", + "1.1840157647", + "1.1707447694", + "1.1711703618", + "1.2894220754", + "1.2966125262", + "1.3180535391", + "1.1226498234", + "1.2923987767", + "1.2990740108", + "1.2837109185", + "1.3033449237", + "1.2925320097", + "1.297598496", + "1.2891022184", + "1.2821521133", + "1.2730224162", + "1.2736805366", + "1.2925944598", + "1.2657130159", + "1.2477488054", + "1.3416367463", + "1.34301062", + "1.3123222077", + "1.3699018983", + "1.3074804858", + "1.3129744286", + "1.3100134035", + "1.3347203886", + "1.3238979398", + "1.2320548678", + "1.2031447783", + "1.1643337183", + "1.1422324251", + "1.1335906188", + "1.1284704277", + "1.1653420534", + "1.1678371793", + "1.1396491104", + "1.1280111565", + "1.1315976655", + "1.2005507763", + "1.2072591584", + "1.1768882118", + "1.300806285", + "1.2952913896", + "1.2976324408", + "1.2553555146", + "1.2515015351", + "1.2894081088", + "1.2812312945", + "1.249989272", + "1.2515486307", + "1.2695686244", + "1.2262638297", + "1.2154277007", + "1.2165882532", + "1.2500745946", + "1.2382510419", + "1.2196241847", + "1.238612807", + "1.2199448083", + "1.2337597505", + "1.2279771795", + "1.2269087975", + "1.2474672492", + "1.2432547018", + "1.2261356564", + "1.2603640304", + "1.2451297887", + "1.2502420977", + "1.2496354122", + "1.2140337818", + "1.2100135736", + "1.194546222", + "1.2128927272", + "1.2098263524", + "1.1841347586", + "1.1671220107", + "1.1618143598", + "1.1665561444", + "1.1656975337", + "1.1984634936", + "1.1974828318", + "1.2215226294", + "1.1994136024", + "1.1599056104", + "1.1630700212", + "1.1881319132", + "1.1844230291", + "1.1601724124", + "1.1527150625", + "1.1550683218", + "1.1642458567", + "1.0900117598", + "1.1326148606", + "1.1169110899", + "1.1107493267", + "1.1044690819", + "1.0923664643", + "1.0955368037", + "1.1377088931", + "1.5721007243", + "1.6568789234", + "1.5694143483", + "1.5545966362", + "1.5329240034", + "1.0866016623", + "1.1054060683", + "1.1553389334", + "1.1169781814", + "1.1322153844", + "1.245752522", + "1.1995231291", + "1.2211748033", + "1.1798414572", + "1.0931797687", + "1.1055621116", + "1.1120531828", + "1.1724797196", + "1.163680187", + "1.161761456", + "1.1877637371", + "1.1850713015", + "1.1763032459", + "1.2078238695", + "1.215907334", + "1.2000960608", + "1.173477811", + "1.1681322379", + "1.1735429138", + "1.1622497726", + "1.1072188778", + "1.1123036997", + "1.1115484762", + "1.1583600607", + "1.1137897813", + "1.0962415829", + "1.1736663891", + "1.1269337493", + "1.1020162868", + "1.115051778", + "1.0856672644", + "1.0508809062", + "1.134968942", + "1.1373227284", + "1.1420999381", + "1.1474455361", + "1.1131445103", + "1.1738002596", + "1.180636375", + "1.1771473725", + "1.1898124379", + "1.1758963951", + "1.1556804889", + "1.1470797202", + "1.1937315884", + "1.2130098611", + "1.263688881", + "1.1066112648", + "1.0757839707", + "1.1687896846", + "1.1677729847", + "1.154993909", + "1.1119186219", + "1.1767419361", + "1.1676851839", + "1.1703374462", + "1.2014767515", + "1.1431356183", + "1.1284019155", + "1.1100267872", + "1.1383424259", + "1.1098495006", + "1.1649954179", + "1.1959888179", + "1.2186216657", + "1.1753054887", + "1.1466517002", + "1.1668985969", + "1.1466522085", + "1.1330382336", + "1.0977831627", + "1.1327327222", + "1.0638222463", + "1.0810876173", + "1.1638963283", + "1.1522616675", + "1.1493632412", + "1.1595175484", + "1.1678804339", + "1.1572030727", + "1.1691436403", + "1.1576101828", + "1.1551486762", + "1.1235595446", + "1.1295544504", + "1.1358124476", + "1.1229669022", + "1.1565055391", + "1.0887347508", + "1.1472326911", + "1.1443774585", + "1.134617991", + "1.1338431146", + "1.1599852394", + "1.1365940026", + "1.1062878646", + "1.0209597652", + "1.03276431", + "1.0337815859", + "0.9778048087", + "0.9899317292", + "0.9866433272", + "0.9679691281", + "0.9766510798", + "0.9726102929", + "0.9626471431", + "0.9884481697", + "0.985136833", + "0.9485075547", + "0.9670459874", + "0.9248047284", + "0.9274836672", + "0.9414740825", + "0.9429751922", + "0.9296453471", + "0.919123953", + "0.9458783853", + "0.9318014382", + "0.8917951411", + "0.8991586767", + "1.0687262402", + "0.8890597314", + "0.8936040857", + "0.8972078596", + "0.8931552514", + "0.8602732247", + "0.8900818995", + "0.9101411417", + "0.9121338654", + "0.910216266", + "0.893533177", + "0.8923732474", + "0.8581368376", + "0.8604126391", + "0.9862960326", + "0.9974903887", + "0.8837771644", + "0.8894345762", + "0.8795058846", + "0.843637704", + "0.8692461009", + "0.8599809864", + "0.8521162386", + "0.8512623082", + "0.8587868641", + "0.8527793903", + "0.8718483092", + "0.8657719924", + "0.8774943432", + "0.8722615674", + "0.8590453182", + "0.8471116165", + "0.8567723424", + "0.8526188581", + "0.8585211607", + "0.8505728159", + "0.8260122802", + "0.8354252467", + "0.8292568313", + "0.8572880189", + "0.8549830713", + "0.3811641804", + "0.3949953032", + "0.4076874139", + "0.4386063866", + "0.4422302855", + "0.4310171423", + "0.4470675402", + "0.4276174524", + "0.4240407513", + "0.4409578102", + "0.430758802", + "0.4353175738", + "0.4433705955", + "0.429155759", + "0.4209805524", + "0.4810715319", + "0.4575337586", + "0.4578507846", + "0.4584941985", + "0.4530016038", + "0.4431069797", + "0.5032840561", + "0.4741929232", + "0.3964356892", + "0.4152507086", + "0.4350164668", + "0.4111261571", + "0.3928295318", + "0.3742996459", + "0.3906048374", + "0.3979612376", + "0.3803594146", + "0.3700740146", + "0.3762452717", + "0.3799629292", + "0.0", + "0.1975798652", + "0.3090935995", + "0.3976169397", + "0.3804985016", + "0.6998243501", + "0.7108130387", + "0.6448843292", + "0.6461612056", + "0.6043443577", + "0.6207635287", + "0.6191471946", + "0.642886324", + "0.6303108628", + "0.6081080431", + "0.7892990488", + "0.7955983844", + "0.775600079", + "0.7881285249", + "0.7866545272", + "0.7550563174", + "0.7648554569", + "0.8137840069", + "0.84920817", + "0.8240209907", + "0.8047091885", + "0.7535631133", + "0.765361714", + "0.7650551638", + "0.7958710592", + "0.796228755", + "0.7289462339", + "0.8667188403", + "0.8713024815", + "0.8810460575", + "0.8608076016", + "0.8225029214", + "0.8918964182", + "0.8728600947", + "0.8777217829", + "0.8145099365", + "0.8462220499", + "0.8548581086", + "0.8665158628", + "0.8489513233", + "0.8355870077", + "0.7999540261", + "0.7990396537", + "0.8055063435", + "0.8813446262", + "0.8614611385", + "0.9368440369", + "0.8908544838", + "0.8451969071", + "0.851401944", + "0.8563422334", + "0.8510335747", + "0.8452319737", + "0.8726722427", + "0.8548157789", + "0.8467662853", + "0.8377533183", + "0.8596907953", + "0.8541889505", + "0.8558228425", + "0.8197727514", + "0.8219292228", + "0.7950550099", + "0.8783187004", + "0.8540569241", + "0.8394151105", + "0.8196837646", + "0.9554074553", + "0.9586672636", + "0.9865742449", + "0.9412100659", + "0.9453133819", + "0.9593618614", + "0.9730783272", + "0.9967175484", + "0.9379128567", + "0.9159266888", + "0.9445329213", + "0.9127835767", + "0.916097402", + "0.9290646488", + "0.9094192839", + "0.9166816281", + "0.9023167752", + "0.8982283463", + "0.979971979", + "0.9721634446", + "0.9264826351", + "0.9472495978", + "0.9439303271", + "0.9971396866", + "0.9245380409", + "0.908749264", + "0.9263817909", + "0.9272049066", + "0.9286347688", + "0.9540557388", + "0.9659803882", + "1.0244444084", + "1.0278308026", + "1.0108764801", + "0.9961086178", + "0.9768824849", + "0.9460166056", + "1.3072986674", + "1.3317391439", + "1.2955838654", + "1.3062344701", + "1.2834789356", + "1.2697273147", + "1.3600757002", + "1.3889198853", + "1.3900378075", + "1.3143069429", + "1.3118390676", + "1.3119057832", + "1.305695889", + "1.3237830976", + "1.2998002418", + "1.2756524113", + "1.2384493014", + "1.246592299", + "1.2247737204", + "1.2455053699", + "1.2037897996", + "1.2182773325", + "1.2199297587", + "1.2255455997", + "1.2180527843", + "1.2175873852", + "1.2148482373", + "1.2051506102", + "1.2228578325", + "1.2030041969", + "1.2054513478", + "1.2011915134", + "1.2158499604", + "1.2349500625", + "1.1782479438", + "1.200648718", + "1.2086863488", + "1.2078284392", + "1.1910850938", + "1.1803072543", + "1.180438412", + "1.1851310596", + "1.1884478334", + "1.2211684454", + "1.2523705339", + "1.247298556", + "1.1712402855", + "1.1721315705", + "1.1673832588", + "1.1734325089", + "1.0944641909", + "0.9914208738", + "1.0050533868", + "1.2442804885", + "1.4521311143", + "1.2057716774", + "1.2662869629", + "1.2676789119", + "1.2435423045", + "1.2512208077", + "1.2739411987", + "1.2637427308", + "1.2811518268", + "1.2823058882", + "1.2788685582", + "1.2785295998", + "1.3053140721", + "1.2752715544", + "1.2789108329", + "1.2827354144", + "1.2829549482", + "1.2463075838", + "1.251183899", + "1.2722299391", + "1.2526821261", + "1.2600228732", + "1.2119342878", + "1.2043823821", + "1.2350949631", + "1.2312707161", + "1.2436198083", + "1.2484774441", + "1.2431220898", + "1.2426855196", + "1.2337366484", + "1.2457530686", + "1.2234023273", + "1.2393508459", + "1.248063585", + "1.2437783031", + "1.2519758695", + "1.267232091", + "1.2627014385", + "1.2037957345", + "1.2415462447", + "1.2320476413", + "1.1941417126", + "1.4643170401", + "1.4969536979", + "1.4624302586", + "1.4711091121", + "1.4449995683", + "1.2587897284", + "1.1120599565", + "1.1040925312", + "1.1574276423", + "1.1206997276", + "1.1257402187", + "1.1235096206", + "1.1111631999", + "1.116105801", + "1.0693555165", + "1.1246509926", + "1.1190132413", + "1.1644986642", + "1.1425938424", + "1.1349486062", + "1.1222787322", + "1.0351675969", + "1.039085213", + "1.1472399382", + "1.1297959419", + "1.1337432544", + "1.1285556034", + "1.1011394706", + "1.1902148356", + "1.1377844017", + "1.1378307766", + "1.2348796465", + "1.2654266093", + "1.220838423", + "1.2278307944", + "1.2005944496", + "1.2059822478", + "1.2051493699", + "1.1973160543", + "1.1399366724", + "1.2885504247", + "1.3427153922", + "1.3097383155", + "1.2989367146", + "1.3062426292", + "1.2468377906", + "1.2594386215", + "1.2664962345", + "1.2617342022", + "1.3110972437", + "1.3170841159", + "1.326482965", + "1.3385743452", + "1.2737503852", + "1.3155391063", + "1.31367069", + "1.2400851278", + "1.2382128568", + "1.2664086305", + "1.2595119996", + "1.3113307509", + "1.2150066397", + "1.1603359813", + "1.1781497122", + "1.1408943164", + "1.1732940439", + "1.2565248047", + "1.2697671609", + "1.2846833883", + "1.2999197955", + "1.213688391", + "1.1460774401", + "1.206460158", + "1.2791644523", + "1.1249989471", + "1.1538575492", + "1.1599797978", + "1.2167691697", + "1.1700992878", + "1.1766129336", + "1.1813952796", + "1.1626439189", + "1.1888904658", + "1.2561681678", + "1.262722332", + "1.290507847", + "1.3035108372", + "1.3001311372", + "1.1787680568", + "1.2058123639", + "1.1691014084", + "1.1745186269", + "1.2265032388", + "1.2588164601", + "1.2507518385", + "1.2591673019", + "1.2462619592", + "1.2333688732", + "1.2379153612", + "1.2915406531", + "1.3469264745", + "1.4436837957", + "1.3568082136", + "1.3561779087", + "1.3840036604", + "1.3213913007", + "1.38823742", + "1.3832834935", + "1.3482583928", + "1.3575218585", + "1.2528079774", + "1.5443650427", + "1.470519734", + "1.4797087544", + "1.4072183821", + "1.4195092237", + "1.4091241242", + "1.5113277333", + "1.4385593711", + "1.476746986", + "1.4708298602", + "1.4487143422", + "1.3779415557", + "1.3806863992", + "1.4253449493", + "1.4191057077", + "1.4236945083", + "1.3890929205", + "1.380673896", + "1.3726370546", + "1.4322861761", + "1.3911148202", + "1.3987835226", + "1.3693043514", + "1.3220512711", + "1.4256139234", + "1.3636980345", + "1.3568313898", + "1.3770596217", + "1.4532038793", + "1.4654754379", + "1.4740643011", + "1.4691765325", + "1.4629718061", + "1.4528120113", + "1.4518301225", + "1.4451770406", + "1.5633719181", + "1.5442551932", + "1.4181903131", + "1.4674756561", + "1.4674029742", + "1.4610437458", + "1.4635565163", + "1.5296390164", + "1.524188994", + "1.4790674546", + "1.465032111", + "1.4623792089", + "1.4508831249", + "1.4696165186", + "1.4380928944", + "1.4290487441", + "1.4248871842", + "1.4404478781", + "1.435918189", + "1.4268162413", + "1.4333861557", + "1.4480614695", + "1.462812042", + "1.4717464088", + "1.4982110965", + "1.449741704", + "1.4737534717", + "1.4846784953", + "1.4283668499", + "1.482686589", + "1.4576187367", + "1.4335561476", + "1.4330573768", + "1.4407506939", + "1.4347155842", + "1.4078476611", + "1.4157927192", + "1.4189349286", + "1.3902152131" + ] + }, + "essential_compounds": [ + "12dgr180", + "26dap_M", + "2obut", + "4abut", + "4abz", + "4hbz", + "5mthf", + "C02528", + "ac", + "acald", + "acgam", + "actn_R", + "ade", + "adocbl", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_L", + "arabttr", + "arbt", + "arg_L", + "arsenb", + "asn_L", + "asp_L", + "btn", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cholate", + "chols", + "chtbs", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dgchol", + "dgsn", + "diact", + "drib", + "etha", + "etoh", + "fe2", + "fe3", + "fecrm", + "fol", + "for", + "fru", + "gal", + "galt", + "gam", + "gbbtn", + "gcald", + "gchola", + "glc_D", + "glcn", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gua", + "h2o", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "k", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "malt", + "malthx", + "malttr", + "man", + "mantr", + "melib", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mqn8", + "na1", + "nac", + "nh4", + "no2", + "o2", + "ocdcea", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "ppa", + "ppi", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "raffin", + "rib_D", + "ribflv", + "salcn", + "sbt_D", + "ser_L", + "sheme", + "so4", + "spmd", + "stys", + "succ", + "sucr", + "taur", + "tchola", + "tdchola", + "thf", + "thm", + "thr_L", + "thymd", + "tre", + "trp_L", + "tyr_L", + "ura", + "uri", + "val_L", + "xan", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_428.json b/agents/agora/agent_428.json new file mode 100644 index 0000000000000000000000000000000000000000..3f2f71d2085cade2c8fae08b575bdc6b645427a2 --- /dev/null +++ b/agents/agora/agent_428.json @@ -0,0 +1,981 @@ +{ + "id": 428, + "name": "Gemella_haemolysans_ATCC_10379", + "N_R": 1183, + "taxonomy": { + "k": 428, + "tax_distance": [ + "2.5191175552", + "2.1012396879", + "2.0945404588", + "2.3211231659", + "2.002523092", + "2.0476517789", + "2.0289464811", + "2.0260038868", + "2.0899854851", + "2.0083413932", + "2.0254060966", + "2.1335284104", + "2.1065461887", + "2.3345601466", + "2.3829169637", + "2.4132494743", + "2.2935990764", + "2.3025231932", + "2.3379976688", + "1.8709819848", + "1.8063110081", + "1.5557897494", + "1.489139317", + "1.3676596403", + "1.1934803615", + "1.1876691534", + "1.184314582", + "1.1866756364", + "1.1709093464", + "1.1622235835", + "1.1646744896", + "1.2662604257", + "1.2757982285", + "1.2721643185", + "1.2878603871", + "1.2563588071", + "1.2791047512", + "1.2974106627", + "1.2783786997", + "1.5713193587", + "1.31616098", + "1.234799924", + "1.2415652302", + "1.2441728103", + "1.2409410683", + "1.24391445", + "1.2390158451", + "1.2394008804", + "1.2335859696", + "1.22562478", + "1.167202602", + "1.172715002", + "1.1669741687", + "1.1391278981", + "1.1456496422", + "1.1747516394", + "1.1486747526", + "1.146658725", + "1.1674131306", + "1.1650732359", + "1.1483314084", + "1.17368218", + "1.1757569698", + "1.1744260766", + "1.1888172941", + "1.190539456", + "1.190539456", + "1.1971850387", + "1.1971850387", + "1.1971850387", + "1.1971850387", + "1.1971850387", + "1.1971850387", + "1.1971850387", + "1.1971850387", + "1.193105676", + "1.1934514132", + "1.1870197056", + "1.1975121802", + "1.1966069383", + "1.1927087687", + "1.1909660951", + "1.1922846649", + "1.1887827844", + "1.1837050361", + "1.1870501617", + "1.1924959285", + "1.1879577368", + "1.1729577807", + "1.1813288956", + "1.1760535104", + "1.1922014514", + "1.1875041622", + "1.1916377315", + "1.1695980209", + "1.1641978371", + "1.1782641922", + "1.1889246012", + "1.2057216442", + "1.188131354", + "1.1781362355", + "1.1768184179", + "1.157568038", + "1.170446527", + "1.229318972", + "1.2241670603", + "1.2910633176", + "1.2572240616", + "1.1944154208", + "1.1981416776", + "1.2008751447", + "1.1937710632", + "1.1937710632", + "1.175147161", + "1.1780513073", + "1.1699507906", + "1.2054764893", + "1.1422539398", + "1.1201630264", + "1.1380273827", + "1.1247563874", + "1.1251819798", + "1.2434336934", + "1.2506241442", + "1.2720651571", + "1.0766614414", + "1.2464103947", + "1.2530856288", + "1.2377225365", + "1.2573565417", + "1.2465436277", + "1.251610114", + "1.2431138364", + "1.2361637313", + "1.2270340342", + "1.2276921546", + "1.2466060778", + "1.2197246339", + "1.2017604234", + "1.2956483643", + "1.297022238", + "1.2663338257", + "1.3239135163", + "1.2614921038", + "1.2669860466", + "1.2640250215", + "1.2887320066", + "1.2779095578", + "1.1860664858", + "1.1571563963", + "1.1183453363", + "1.0962440431", + "1.0876022368", + "1.0824820457", + "1.1193536714", + "1.1218487973", + "1.0936607284", + "1.0820227745", + "1.0856092835", + "1.1545623943", + "1.1612707764", + "1.1308998298", + "1.254817903", + "1.2493030076", + "1.2516440588", + "1.2093671326", + "1.2055131531", + "1.2434197268", + "1.2352429125", + "1.20400089", + "1.2055602487", + "1.2235802424", + "1.1802754477", + "1.1694393187", + "1.1705998712", + "1.2040862126", + "1.1922626599", + "1.1736358027", + "1.192624425", + "1.1739564263", + "1.1877713685", + "1.1819887975", + "1.1809204155", + "1.2014788672", + "1.1972663198", + "1.1801472744", + "1.2143756484", + "1.1991414067", + "1.2042537157", + "1.2036470302", + "1.1680453998", + "1.1640251916", + "1.14855784", + "1.1669043452", + "1.1638379704", + "1.1381463766", + "1.1211336287", + "1.1158259778", + "1.1205677624", + "1.1197091517", + "1.1524751116", + "1.1514944498", + "1.1755342474", + "1.1534252204", + "1.1139172284", + "1.1170816392", + "1.1421435312", + "1.1384346471", + "1.1141840304", + "1.1067266805", + "1.1090799398", + "1.1182574747", + "1.0440233778", + "1.0866264786", + "1.0709227079", + "1.0647609447", + "1.0584806999", + "1.0463780823", + "1.0495484217", + "1.0917205111", + "1.5261123423", + "1.6108905414", + "1.5234259663", + "1.5086082542", + "1.4869356214", + "1.0406132803", + "1.0594176863", + "1.1093505514", + "1.0709897994", + "1.0862270024", + "1.19976414", + "1.1535347471", + "1.1751864213", + "1.1338530752", + "1.0471913867", + "1.0595737296", + "1.0660648008", + "1.1264913376", + "1.117691805", + "1.115773074", + "1.1417753551", + "1.1390829195", + "1.1303148639", + "1.1618354875", + "1.169918952", + "1.1541076788", + "1.127489429", + "1.1221438559", + "1.1275545318", + "1.1162613906", + "1.0612304958", + "1.0663153177", + "1.0655600942", + "1.1123716787", + "1.0678013993", + "1.0502532009", + "1.1276780071", + "1.0809453673", + "1.0560279048", + "1.069063396", + "1.0396788824", + "1.0048925242", + "1.08898056", + "1.0913343464", + "1.0961115561", + "1.1014571541", + "1.0671561283", + "1.1278118776", + "1.134647993", + "1.1311589905", + "1.1438240559", + "1.1299080131", + "1.1096921069", + "1.1010913382", + "1.1477432064", + "1.1670214791", + "1.217700499", + "1.0606228828", + "1.0297955887", + "1.1228013026", + "1.1217846027", + "1.109005527", + "1.0659302399", + "1.1307535541", + "1.1216968019", + "1.1243490642", + "1.1554883695", + "1.0971472363", + "1.0824135335", + "1.0640384052", + "1.0923540439", + "1.0638611186", + "1.1190070359", + "1.1500004359", + "1.1726332837", + "1.1293171067", + "1.1006633182", + "1.1209102149", + "1.1006638265", + "1.0870498516", + "1.0517947807", + "1.0867443402", + "1.0178338643", + "1.0350992353", + "1.1179079463", + "1.1062732855", + "1.1033748592", + "1.1135291664", + "1.1218920519", + "1.1112146907", + "1.1231552583", + "1.1116218008", + "1.1091602942", + "1.0775711626", + "1.0835660684", + "1.0898240656", + "1.0769785202", + "1.1105171571", + "1.0427463688", + "1.1012443091", + "1.0983890765", + "1.088629609", + "1.0878547326", + "1.1139968574", + "1.0906056206", + "1.0602994826", + "0.9749713832", + "0.986775928", + "0.9877932039", + "0.9318164267", + "0.9439433472", + "0.9406549452", + "0.9219807461", + "0.9306626978", + "0.9266219109", + "0.9166587611", + "0.9424597877", + "0.939148451", + "0.9025191727", + "0.9210576054", + "0.8788163464", + "0.8814952852", + "0.8954857005", + "0.8969868102", + "0.8836569651", + "0.873135571", + "0.8998900033", + "0.8858130562", + "0.8458067591", + "0.8531702947", + "1.0227378582", + "0.8430713494", + "0.8476157037", + "0.8512194776", + "0.8471668694", + "0.8142848427", + "0.8440935175", + "0.8641527597", + "0.8661454834", + "0.864227884", + "0.847544795", + "0.8463848654", + "0.8121484556", + "0.8144242571", + "0.9403076506", + "0.9515020067", + "0.8377887824", + "0.8434461942", + "0.8335175026", + "0.797649322", + "0.8232577189", + "0.8139926044", + "0.8061278566", + "0.8052739262", + "0.8127984821", + "0.8067910083", + "0.8258599272", + "0.8197836104", + "0.8315059612", + "0.8262731854", + "0.8130569362", + "0.8011232345", + "0.8107839604", + "0.8066304761", + "0.8125327787", + "0.8045844339", + "0.7800238982", + "0.7894368647", + "0.7832684493", + "0.8112996369", + "0.8089946893", + "0.3351757984", + "0.3490069212", + "0.3616990319", + "0.3926180046", + "0.3962419035", + "0.3850287603", + "0.4010791582", + "0.3816290704", + "0.3780523693", + "0.3949694282", + "0.38477042", + "0.3893291918", + "0.3973822135", + "0.383167377", + "0.3749921704", + "0.4350831499", + "0.4115453766", + "0.4118624026", + "0.4125058165", + "0.4070132218", + "0.3971185977", + "0.4572956741", + "0.4282045412", + "0.3504473072", + "0.3692623266", + "0.3890280848", + "0.3651377751", + "0.3468411498", + "0.3283112639", + "0.3446164554", + "0.3519728556", + "0.3343710326", + "0.3240856326", + "0.3302568897", + "0.3339745472", + "0.1975798652", + "0.0", + "0.2631052175", + "0.3516285577", + "0.3345101196", + "0.6538359681", + "0.6648246567", + "0.5988959472", + "0.6001728236", + "0.5583559757", + "0.5747751467", + "0.5731588126", + "0.596897942", + "0.5843224808", + "0.5621196611", + "0.7433106668", + "0.7496100024", + "0.729611697", + "0.7421401429", + "0.7406661452", + "0.7090679354", + "0.7188670749", + "0.7677956249", + "0.803219788", + "0.7780326087", + "0.7587208065", + "0.7075747313", + "0.719373332", + "0.7190667818", + "0.7498826772", + "0.750240373", + "0.6829578519", + "0.8207304583", + "0.8253140995", + "0.8350576755", + "0.8148192196", + "0.7765145394", + "0.8459080362", + "0.8268717127", + "0.8317334009", + "0.7685215545", + "0.8002336679", + "0.8088697266", + "0.8205274808", + "0.8029629413", + "0.7895986257", + "0.7539656441", + "0.7530512717", + "0.7595179615", + "0.8353562442", + "0.8154727565", + "0.8908556549", + "0.8448661018", + "0.7992085251", + "0.805413562", + "0.8103538514", + "0.8050451927", + "0.7992435917", + "0.8266838607", + "0.8088273969", + "0.8007779033", + "0.7917649363", + "0.8137024133", + "0.8082005685", + "0.8098344605", + "0.7737843694", + "0.7759408408", + "0.7490666279", + "0.8323303184", + "0.8080685421", + "0.7934267285", + "0.7736953826", + "0.9094190733", + "0.9126788816", + "0.9405858629", + "0.8952216839", + "0.8993249999", + "0.9133734794", + "0.9270899452", + "0.9507291664", + "0.8919244747", + "0.8699383068", + "0.8985445393", + "0.8667951947", + "0.87010902", + "0.8830762668", + "0.8634309019", + "0.8706932461", + "0.8563283932", + "0.8522399643", + "0.933983597", + "0.9261750626", + "0.8804942531", + "0.9012612158", + "0.8979419451", + "0.9511513046", + "0.8785496589", + "0.862760882", + "0.8803934089", + "0.8812165246", + "0.8826463868", + "0.9080673568", + "0.9199920062", + "0.9784560264", + "0.9818424206", + "0.9648880981", + "0.9501202358", + "0.9308941029", + "0.9000282236", + "1.2613102854", + "1.2857507619", + "1.2495954834", + "1.2602460881", + "1.2374905536", + "1.2237389327", + "1.3140873182", + "1.3429315033", + "1.3440494255", + "1.2683185609", + "1.2658506856", + "1.2659174012", + "1.259707507", + "1.2777947156", + "1.2538118598", + "1.2296640293", + "1.1924609194", + "1.200603917", + "1.1787853384", + "1.1995169879", + "1.1578014176", + "1.1722889505", + "1.1739413767", + "1.1795572177", + "1.1720644023", + "1.1715990032", + "1.1688598553", + "1.1591622282", + "1.1768694505", + "1.1570158149", + "1.1594629658", + "1.1552031314", + "1.1698615784", + "1.1889616805", + "1.1322595618", + "1.154660336", + "1.1626979668", + "1.1618400572", + "1.1450967118", + "1.1343188723", + "1.13445003", + "1.1391426776", + "1.1424594514", + "1.1751800634", + "1.2063821519", + "1.201310174", + "1.1252519035", + "1.1261431885", + "1.1213948768", + "1.1274441269", + "1.0484758089", + "0.9454324918", + "0.9590650048", + "1.1982921065", + "1.4061427323", + "1.1597832954", + "1.2202985809", + "1.2216905299", + "1.1975539225", + "1.2052324257", + "1.2279528167", + "1.2177543488", + "1.2351634448", + "1.2363175062", + "1.2328801762", + "1.2325412178", + "1.2593256901", + "1.2292831724", + "1.2329224509", + "1.2367470324", + "1.2369665662", + "1.2003192018", + "1.205195517", + "1.2262415571", + "1.2066937441", + "1.2140344912", + "1.1659459058", + "1.1583940001", + "1.1891065811", + "1.1852823341", + "1.1976314263", + "1.2024890621", + "1.1971337078", + "1.1966971376", + "1.1877482664", + "1.1997646866", + "1.1774139453", + "1.1933624639", + "1.202075203", + "1.1977899211", + "1.2059874875", + "1.221243709", + "1.2167130565", + "1.1578073525", + "1.1955578627", + "1.1860592593", + "1.1481533306", + "1.4183286581", + "1.4509653159", + "1.4164418766", + "1.4251207301", + "1.3990111863", + "1.2128013464", + "1.0660715745", + "1.0581041492", + "1.1114392603", + "1.0747113456", + "1.0797518367", + "1.0775212386", + "1.0651748179", + "1.070117419", + "1.0233671345", + "1.0786626106", + "1.0730248593", + "1.1185102822", + "1.0966054604", + "1.0889602242", + "1.0762903502", + "0.9891792149", + "0.993096831", + "1.1012515562", + "1.0838075599", + "1.0877548724", + "1.0825672214", + "1.0551510886", + "1.1442264536", + "1.0917960197", + "1.0918423946", + "1.1888912645", + "1.2194382273", + "1.174850041", + "1.1818424124", + "1.1546060676", + "1.1599938658", + "1.1591609879", + "1.1513276723", + "1.0939482904", + "1.2425620427", + "1.2967270102", + "1.2637499335", + "1.2529483326", + "1.2602542472", + "1.2008494086", + "1.2134502395", + "1.2205078525", + "1.2157458202", + "1.2651088617", + "1.2710957339", + "1.280494583", + "1.2925859632", + "1.2277620032", + "1.2695507243", + "1.267682308", + "1.1940967458", + "1.1922244748", + "1.2204202485", + "1.2135236176", + "1.2653423689", + "1.1690182577", + "1.1143475993", + "1.1321613302", + "1.0949059344", + "1.1273056619", + "1.2105364227", + "1.2237787789", + "1.2386950063", + "1.2539314135", + "1.167700009", + "1.1000890581", + "1.160471776", + "1.2331760703", + "1.0790105651", + "1.1078691672", + "1.1139914158", + "1.1707807877", + "1.1241109058", + "1.1306245516", + "1.1354068976", + "1.1166555369", + "1.1429020838", + "1.2101797858", + "1.21673395", + "1.244519465", + "1.2575224552", + "1.2541427552", + "1.1327796748", + "1.1598239819", + "1.1231130264", + "1.1285302449", + "1.1805148568", + "1.2128280781", + "1.2047634565", + "1.2131789199", + "1.2002735772", + "1.1873804912", + "1.1919269792", + "1.2455522711", + "1.3009380925", + "1.3976954137", + "1.3108198316", + "1.3101895267", + "1.3380152784", + "1.2754029187", + "1.342249038", + "1.3372951115", + "1.3022700108", + "1.3115334765", + "1.2068195954", + "1.4983766607", + "1.424531352", + "1.4337203724", + "1.3612300001", + "1.3735208417", + "1.3631357422", + "1.4653393513", + "1.3925709891", + "1.430758604", + "1.4248414782", + "1.4027259602", + "1.3319531737", + "1.3346980172", + "1.3793565673", + "1.3731173257", + "1.3777061263", + "1.3431045385", + "1.334685514", + "1.3266486726", + "1.3862977941", + "1.3451264382", + "1.3527951406", + "1.3233159694", + "1.2760628891", + "1.3796255414", + "1.3177096525", + "1.3108430078", + "1.3310712397", + "1.4072154973", + "1.4194870559", + "1.4280759191", + "1.4231881505", + "1.4169834241", + "1.4068236293", + "1.4058417405", + "1.3991886586", + "1.5173835361", + "1.4982668112", + "1.3722019311", + "1.4214872741", + "1.4214145922", + "1.4150553638", + "1.4175681343", + "1.4836506344", + "1.478200612", + "1.4330790726", + "1.419043729", + "1.4163908269", + "1.4048947429", + "1.4236281366", + "1.3921045124", + "1.3830603621", + "1.3788988022", + "1.3944594961", + "1.389929807", + "1.3808278593", + "1.3873977737", + "1.4020730875", + "1.41682366", + "1.4257580268", + "1.4522227145", + "1.403753322", + "1.4277650897", + "1.4386901133", + "1.3823784679", + "1.436698207", + "1.4116303547", + "1.3875677656", + "1.3870689948", + "1.3947623119", + "1.3887272022", + "1.3618592791", + "1.3698043372", + "1.3729465466", + "1.3442268311" + ] + }, + "essential_compounds": [ + "26dap_M", + "2obut", + "3mop", + "4abut", + "4abz", + "4hbz", + "C02528", + "ac", + "acald", + "acgam", + "actn_R", + "ade", + "adn", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "amp", + "arab_L", + "arbt", + "arg_L", + "arsenb", + "asn_L", + "asp_L", + "btn", + "ca2", + "cd2", + "cellb", + "cgly", + "cholate", + "cl", + "co2", + "cobalt2", + "csn", + "ctbt", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dgchol", + "dgsn", + "din", + "drib", + "duri", + "etoh", + "fe2", + "fe3", + "fecrm", + "fol", + "for", + "fru", + "gal", + "galt", + "gam", + "gbbtn", + "gcald", + "gchola", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gua", + "h2o", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "ins", + "k", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mqn8", + "n2o", + "na1", + "nac", + "nh4", + "no2", + "no", + "o2", + "ocdca", + "ocdcea", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "pnto_R", + "ppa", + "pro_L", + "ptrc", + "rib_D", + "ribflv", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "sheme", + "so4", + "spmd", + "succ", + "sucr", + "taur", + "tchola", + "tdchola", + "thm", + "thr_L", + "thymd", + "tre", + "trp_L", + "tyr_L", + "ura", + "uri", + "val_L", + "xan", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_429.json b/agents/agora/agent_429.json new file mode 100644 index 0000000000000000000000000000000000000000..1f36ef6236e516b4a9342c9b597043b05e4ae090 --- /dev/null +++ b/agents/agora/agent_429.json @@ -0,0 +1,981 @@ +{ + "id": 429, + "name": "Gemella_morbillorum_M424", + "N_R": 850, + "taxonomy": { + "k": 429, + "tax_distance": [ + "2.5447933629", + "2.1269154956", + "2.1202162665", + "2.3467989736", + "2.0281988997", + "2.0733275866", + "2.0546222888", + "2.0516796945", + "2.1156612928", + "2.0340172009", + "2.0510819043", + "2.1592042181", + "2.1322219964", + "2.3602359543", + "2.4085927714", + "2.438925282", + "2.3192748841", + "2.3281990009", + "2.3636734765", + "1.8966577925", + "1.8319868158", + "1.5814655571", + "1.5148151247", + "1.393335448", + "1.2191561692", + "1.2133449611", + "1.2099903897", + "1.2123514441", + "1.1965851541", + "1.1878993912", + "1.1903502973", + "1.2919362334", + "1.3014740362", + "1.2978401262", + "1.3135361948", + "1.2820346148", + "1.3047805589", + "1.3230864704", + "1.3040545074", + "1.5969951664", + "1.3418367877", + "1.2604757317", + "1.2672410379", + "1.269848618", + "1.266616876", + "1.2695902577", + "1.2646916528", + "1.2650766881", + "1.2592617773", + "1.2513005877", + "1.1928784097", + "1.1983908097", + "1.1926499764", + "1.1648037058", + "1.1713254499", + "1.2004274471", + "1.1743505603", + "1.1723345327", + "1.1930889383", + "1.1907490436", + "1.1740072161", + "1.1993579877", + "1.2014327775", + "1.2001018843", + "1.2144931018", + "1.2162152637", + "1.2162152637", + "1.2228608464", + "1.2228608464", + "1.2228608464", + "1.2228608464", + "1.2228608464", + "1.2228608464", + "1.2228608464", + "1.2228608464", + "1.2187814837", + "1.2191272209", + "1.2126955133", + "1.2231879879", + "1.222282746", + "1.2183845764", + "1.2166419028", + "1.2179604726", + "1.2144585921", + "1.2093808438", + "1.2127259694", + "1.2181717362", + "1.2136335445", + "1.1986335884", + "1.2070047033", + "1.2017293181", + "1.2178772591", + "1.2131799699", + "1.2173135392", + "1.1952738286", + "1.1898736448", + "1.2039399999", + "1.2146004089", + "1.2313974519", + "1.2138071617", + "1.2038120432", + "1.2024942256", + "1.1832438457", + "1.1961223347", + "1.2549947797", + "1.249842868", + "1.3167391253", + "1.2828998693", + "1.2200912285", + "1.2238174853", + "1.2265509524", + "1.2194468709", + "1.2194468709", + "1.2008229687", + "1.203727115", + "1.1956265983", + "1.231152297", + "1.1679297475", + "1.1458388341", + "1.1637031904", + "1.1504321951", + "1.1508577875", + "1.2691095011", + "1.2762999519", + "1.2977409648", + "1.1023372491", + "1.2720862024", + "1.2787614365", + "1.2633983442", + "1.2830323494", + "1.2722194354", + "1.2772859217", + "1.2687896441", + "1.261839539", + "1.2527098419", + "1.2533679623", + "1.2722818855", + "1.2454004416", + "1.2274362311", + "1.321324172", + "1.3226980457", + "1.2920096334", + "1.349589324", + "1.2871679115", + "1.2926618543", + "1.2897008292", + "1.3144078143", + "1.3035853655", + "1.2117422935", + "1.182832204", + "1.144021144", + "1.1219198508", + "1.1132780445", + "1.1081578534", + "1.1450294791", + "1.147524605", + "1.1193365361", + "1.1076985822", + "1.1112850912", + "1.180238202", + "1.1869465841", + "1.1565756375", + "1.2804937107", + "1.2749788153", + "1.2773198665", + "1.2350429403", + "1.2311889608", + "1.2690955345", + "1.2609187202", + "1.2296766977", + "1.2312360564", + "1.2492560501", + "1.2059512554", + "1.1951151264", + "1.1962756789", + "1.2297620203", + "1.2179384676", + "1.1993116104", + "1.2183002327", + "1.199632234", + "1.2134471762", + "1.2076646052", + "1.2065962232", + "1.2271546749", + "1.2229421275", + "1.2058230821", + "1.2400514561", + "1.2248172144", + "1.2299295234", + "1.2293228379", + "1.1937212075", + "1.1897009993", + "1.1742336477", + "1.1925801529", + "1.1895137781", + "1.1638221843", + "1.1468094364", + "1.1415017855", + "1.1462435701", + "1.1453849594", + "1.1781509193", + "1.1771702575", + "1.2012100551", + "1.1791010281", + "1.1395930361", + "1.1427574469", + "1.1678193389", + "1.1641104548", + "1.1398598381", + "1.1324024882", + "1.1347557475", + "1.1439332824", + "1.0696991855", + "1.1123022863", + "1.0965985156", + "1.0904367524", + "1.0841565076", + "1.07205389", + "1.0752242294", + "1.1173963188", + "1.55178815", + "1.6365663491", + "1.549101774", + "1.5342840619", + "1.5126114291", + "1.066289088", + "1.085093494", + "1.1350263591", + "1.0966656071", + "1.1119028101", + "1.2254399477", + "1.1792105548", + "1.200862229", + "1.1595288829", + "1.0728671944", + "1.0852495373", + "1.0917406085", + "1.1521671453", + "1.1433676127", + "1.1414488817", + "1.1674511628", + "1.1647587272", + "1.1559906716", + "1.1875112952", + "1.1955947597", + "1.1797834865", + "1.1531652367", + "1.1478196636", + "1.1532303395", + "1.1419371983", + "1.0869063035", + "1.0919911254", + "1.0912359019", + "1.1380474864", + "1.093477207", + "1.0759290086", + "1.1533538148", + "1.106621175", + "1.0817037125", + "1.0947392037", + "1.0653546901", + "1.0305683319", + "1.1146563677", + "1.1170101541", + "1.1217873638", + "1.1271329618", + "1.092831936", + "1.1534876853", + "1.1603238007", + "1.1568347982", + "1.1694998636", + "1.1555838208", + "1.1353679146", + "1.1267671459", + "1.1734190141", + "1.1926972868", + "1.2433763067", + "1.0862986905", + "1.0554713964", + "1.1484771103", + "1.1474604104", + "1.1346813347", + "1.0916060476", + "1.1564293618", + "1.1473726096", + "1.1500248719", + "1.1811641772", + "1.122823044", + "1.1080893412", + "1.0897142129", + "1.1180298516", + "1.0895369263", + "1.1446828436", + "1.1756762436", + "1.1983090914", + "1.1549929144", + "1.1263391259", + "1.1465860226", + "1.1263396342", + "1.1127256593", + "1.0774705884", + "1.1124201479", + "1.043509672", + "1.060775043", + "1.143583754", + "1.1319490932", + "1.1290506669", + "1.1392049741", + "1.1475678596", + "1.1368904984", + "1.148831066", + "1.1372976085", + "1.1348361019", + "1.1032469703", + "1.1092418761", + "1.1154998733", + "1.1026543279", + "1.1361929648", + "1.0684221765", + "1.1269201168", + "1.1240648842", + "1.1143054167", + "1.1135305403", + "1.1396726651", + "1.1162814283", + "1.0859752903", + "1.0006471909", + "1.0124517357", + "1.0134690116", + "0.9574922344", + "0.9696191549", + "0.9663307529", + "0.9476565538", + "0.9563385055", + "0.9522977186", + "0.9423345688", + "0.9681355954", + "0.9648242587", + "0.9281949804", + "0.9467334131", + "0.9044921541", + "0.9071710929", + "0.9211615082", + "0.9226626179", + "0.9093327728", + "0.8988113787", + "0.925565811", + "0.9114888639", + "0.8714825668", + "0.8788461024", + "1.0484136659", + "0.8687471571", + "0.8732915114", + "0.8768952853", + "0.8728426771", + "0.8399606504", + "0.8697693252", + "0.8898285674", + "0.8918212911", + "0.8899036917", + "0.8732206027", + "0.8720606731", + "0.8378242633", + "0.8401000648", + "0.9659834583", + "0.9771778144", + "0.8634645901", + "0.8691220019", + "0.8591933103", + "0.8233251297", + "0.8489335266", + "0.8396684121", + "0.8318036643", + "0.8309497339", + "0.8384742898", + "0.832466816", + "0.8515357349", + "0.8454594181", + "0.8571817689", + "0.8519489931", + "0.8387327439", + "0.8267990422", + "0.8364597681", + "0.8323062838", + "0.8382085864", + "0.8302602416", + "0.8056997059", + "0.8151126724", + "0.808944257", + "0.8369754446", + "0.834670497", + "0.3608516061", + "0.3746827289", + "0.3873748396", + "0.4182938123", + "0.4219177112", + "0.410704568", + "0.4267549659", + "0.4073048781", + "0.403728177", + "0.4206452359", + "0.4104462277", + "0.4150049995", + "0.4230580212", + "0.4088431847", + "0.4006679781", + "0.4607589576", + "0.4372211843", + "0.4375382103", + "0.4381816242", + "0.4326890295", + "0.4227944054", + "0.4829714818", + "0.4538803489", + "0.3761231149", + "0.3949381343", + "0.4147038925", + "0.3908135828", + "0.3725169575", + "0.3539870716", + "0.3702922631", + "0.3776486633", + "0.3600468403", + "0.3497614403", + "0.3559326974", + "0.3596503549", + "0.3090935995", + "0.2631052175", + "0.0", + "0.3773043654", + "0.3601859273", + "0.6795117758", + "0.6905004644", + "0.6245717549", + "0.6258486313", + "0.5840317834", + "0.6004509544", + "0.5988346203", + "0.6225737497", + "0.6099982885", + "0.5877954688", + "0.7689864745", + "0.7752858101", + "0.7552875047", + "0.7678159506", + "0.7663419529", + "0.7347437431", + "0.7445428826", + "0.7934714326", + "0.8288955957", + "0.8037084164", + "0.7843966142", + "0.733250539", + "0.7450491397", + "0.7447425895", + "0.7755584849", + "0.7759161807", + "0.7086336596", + "0.846406266", + "0.8509899072", + "0.8607334832", + "0.8404950273", + "0.8021903471", + "0.8715838439", + "0.8525475204", + "0.8574092086", + "0.7941973622", + "0.8259094756", + "0.8345455343", + "0.8462032885", + "0.828638749", + "0.8152744334", + "0.7796414518", + "0.7787270794", + "0.7851937692", + "0.8610320519", + "0.8411485642", + "0.9165314626", + "0.8705419095", + "0.8248843328", + "0.8310893697", + "0.8360296591", + "0.8307210004", + "0.8249193994", + "0.8523596684", + "0.8345032046", + "0.826453711", + "0.817440744", + "0.839378221", + "0.8338763762", + "0.8355102682", + "0.7994601771", + "0.8016166485", + "0.7747424356", + "0.8580061261", + "0.8337443498", + "0.8191025362", + "0.7993711903", + "0.935094881", + "0.9383546893", + "0.9662616706", + "0.9208974916", + "0.9250008076", + "0.9390492871", + "0.9527657529", + "0.9764049741", + "0.9176002824", + "0.8956141145", + "0.924220347", + "0.8924710024", + "0.8957848277", + "0.9087520745", + "0.8891067096", + "0.8963690538", + "0.8820042009", + "0.877915772", + "0.9596594047", + "0.9518508703", + "0.9061700608", + "0.9269370235", + "0.9236177528", + "0.9768271123", + "0.9042254666", + "0.8884366897", + "0.9060692166", + "0.9068923323", + "0.9083221945", + "0.9337431645", + "0.9456678139", + "1.0041318341", + "1.0075182283", + "0.9905639058", + "0.9757960435", + "0.9565699106", + "0.9257040313", + "1.2869860931", + "1.3114265696", + "1.2752712911", + "1.2859218958", + "1.2631663613", + "1.2494147404", + "1.3397631259", + "1.368607311", + "1.3697252332", + "1.2939943686", + "1.2915264933", + "1.2915932089", + "1.2853833147", + "1.3034705233", + "1.2794876675", + "1.255339837", + "1.2181367271", + "1.2262797247", + "1.2044611461", + "1.2251927956", + "1.1834772253", + "1.1979647582", + "1.1996171844", + "1.2052330254", + "1.19774021", + "1.1972748109", + "1.194535663", + "1.1848380359", + "1.2025452582", + "1.1826916226", + "1.1851387735", + "1.1808789391", + "1.1955373861", + "1.2146374882", + "1.1579353695", + "1.1803361437", + "1.1883737745", + "1.1875158649", + "1.1707725195", + "1.15999468", + "1.1601258377", + "1.1648184853", + "1.1681352591", + "1.2008558711", + "1.2320579596", + "1.2269859817", + "1.1509277112", + "1.1518189962", + "1.1470706845", + "1.1531199346", + "1.0741516166", + "0.9711082995", + "0.9847408125", + "1.2239679142", + "1.43181854", + "1.1854591031", + "1.2459743886", + "1.2473663376", + "1.2232297302", + "1.2309082334", + "1.2536286244", + "1.2434301565", + "1.2608392525", + "1.2619933139", + "1.2585559839", + "1.2582170255", + "1.2850014978", + "1.2549589801", + "1.2585982586", + "1.2624228401", + "1.2626423739", + "1.2259950095", + "1.2308713247", + "1.2519173648", + "1.2323695518", + "1.2397102989", + "1.1916217135", + "1.1840698078", + "1.2147823888", + "1.2109581418", + "1.223307234", + "1.2281648698", + "1.2228095155", + "1.2223729453", + "1.2134240741", + "1.2254404943", + "1.203089753", + "1.2190382716", + "1.2277510107", + "1.2234657288", + "1.2316632952", + "1.2469195167", + "1.2423888642", + "1.1834831602", + "1.2212336704", + "1.211735067", + "1.1738291383", + "1.4440044658", + "1.4766411236", + "1.4421176843", + "1.4507965378", + "1.424686994", + "1.2384771541", + "1.0917473822", + "1.0837799569", + "1.137115068", + "1.1003871533", + "1.1054276444", + "1.1031970463", + "1.0908506256", + "1.0957932267", + "1.0490429422", + "1.1043384183", + "1.098700667", + "1.1441860899", + "1.1222812681", + "1.1146360319", + "1.1019661579", + "1.0148550226", + "1.0187726387", + "1.1269273639", + "1.1094833676", + "1.1134306801", + "1.1082430291", + "1.0808268963", + "1.1699022613", + "1.1174718274", + "1.1175182023", + "1.2145670722", + "1.245114035", + "1.2005258487", + "1.2075182201", + "1.1802818753", + "1.1856696735", + "1.1848367956", + "1.17700348", + "1.1196240981", + "1.2682378504", + "1.3224028179", + "1.2894257412", + "1.2786241403", + "1.2859300549", + "1.2265252163", + "1.2391260472", + "1.2461836602", + "1.2414216279", + "1.2907846694", + "1.2967715416", + "1.3061703907", + "1.3182617709", + "1.2534378109", + "1.295226532", + "1.2933581157", + "1.2197725535", + "1.2179002825", + "1.2460960562", + "1.2391994253", + "1.2910181766", + "1.1946940654", + "1.140023407", + "1.1578371379", + "1.1205817421", + "1.1529814696", + "1.2362122304", + "1.2494545866", + "1.264370814", + "1.2796072212", + "1.1933758167", + "1.1257648658", + "1.1861475837", + "1.258851878", + "1.1046863728", + "1.1335449749", + "1.1396672235", + "1.1964565954", + "1.1497867135", + "1.1563003593", + "1.1610827053", + "1.1423313446", + "1.1685778915", + "1.2358555935", + "1.2424097577", + "1.2701952727", + "1.2831982629", + "1.2798185629", + "1.1584554825", + "1.1854997896", + "1.1487888341", + "1.1542060526", + "1.2061906645", + "1.2385038858", + "1.2304392642", + "1.2388547276", + "1.2259493849", + "1.2130562989", + "1.2176027869", + "1.2712280788", + "1.3266139002", + "1.4233712214", + "1.3364956393", + "1.3358653344", + "1.3636910861", + "1.3010787264", + "1.3679248457", + "1.3629709192", + "1.3279458185", + "1.3372092842", + "1.2324954031", + "1.5240524684", + "1.4502071597", + "1.4593961801", + "1.3869058078", + "1.3991966494", + "1.3888115499", + "1.491015159", + "1.4182467968", + "1.4564344117", + "1.4505172859", + "1.4284017679", + "1.3576289814", + "1.3603738249", + "1.405032375", + "1.3987931334", + "1.403381934", + "1.3687803462", + "1.3603613217", + "1.3523244803", + "1.4119736018", + "1.3708022459", + "1.3784709483", + "1.3489917771", + "1.3017386968", + "1.4053013491", + "1.3433854602", + "1.3365188155", + "1.3567470474", + "1.432891305", + "1.4451628636", + "1.4537517268", + "1.4488639582", + "1.4426592318", + "1.432499437", + "1.4315175482", + "1.4248644663", + "1.5430593438", + "1.5239426189", + "1.3978777388", + "1.4471630818", + "1.4470903999", + "1.4407311715", + "1.443243942", + "1.5093264421", + "1.5038764197", + "1.4587548803", + "1.4447195367", + "1.4420666346", + "1.4305705506", + "1.4493039443", + "1.4177803201", + "1.4087361698", + "1.4045746099", + "1.4201353038", + "1.4156056147", + "1.406503667", + "1.4130735814", + "1.4277488952", + "1.4424994677", + "1.4514338345", + "1.4778985222", + "1.4294291297", + "1.4534408974", + "1.464365921", + "1.4080542756", + "1.4623740147", + "1.4373061624", + "1.4132435733", + "1.4127448025", + "1.4204381196", + "1.4144030099", + "1.3875350868", + "1.3954801449", + "1.3986223543", + "1.3699026388" + ] + }, + "essential_compounds": [ + "12dgr180", + "12ppd_S", + "26dap_M", + "2dmmq8", + "3mop", + "4hbz", + "ac", + "acald", + "acgam", + "adocbl", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arabttr", + "arbt", + "arg_L", + "arsenb", + "asn_L", + "asp_L", + "bhb", + "btn", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "chols", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "dcyt", + "dextrin", + "etoh", + "fe2", + "fe3", + "fecrm", + "fol", + "for", + "fru", + "gal", + "galctn_D", + "galt", + "gam", + "gbbtn", + "gcald", + "glc_D", + "glcn", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gua", + "h2o", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "inost", + "k", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man", + "mantr", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mqn8", + "n2o", + "na1", + "nac", + "nh4", + "no2", + "no", + "o2", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "pnto_R", + "ppa", + "ppi", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "q8", + "rib_D", + "ribflv", + "rmn", + "salcn", + "sbt_D", + "ser_L", + "sheme", + "so4", + "spmd", + "stys", + "succ", + "sucr", + "thm", + "thr_L", + "tma", + "tre", + "trp_L", + "tyr_L", + "ura", + "urea", + "val_L", + "xan", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_430.json b/agents/agora/agent_430.json new file mode 100644 index 0000000000000000000000000000000000000000..40d1b347f93c01bd1b8173d98c6d1d7de9dce627 --- /dev/null +++ b/agents/agora/agent_430.json @@ -0,0 +1,964 @@ +{ + "id": 430, + "name": "Gemella_sanguinis_ATCC700632", + "N_R": 1127, + "taxonomy": { + "k": 430, + "tax_distance": [ + "2.4297570999", + "2.0118792326", + "2.0051800035", + "2.2317627106", + "1.9131626367", + "1.9582913236", + "1.9395860258", + "1.9366434315", + "2.0006250298", + "1.9189809379", + "1.9360456413", + "2.0441679551", + "2.0171857334", + "2.2451996913", + "2.2935565084", + "2.323889019", + "2.2042386211", + "2.2131627379", + "2.2486372135", + "1.7816215295", + "1.7169505528", + "1.4664292941", + "1.3997788617", + "1.278299185", + "1.1041199062", + "1.0983086981", + "1.0949541267", + "1.0973151811", + "1.0815488911", + "1.0728631282", + "1.0753140343", + "1.1768999704", + "1.1864377732", + "1.1828038632", + "1.1984999318", + "1.1669983518", + "1.1897442959", + "1.2080502074", + "1.1890182444", + "1.4819589034", + "1.2268005247", + "1.1454394687", + "1.1522047749", + "1.154812355", + "1.151580613", + "1.1545539947", + "1.1496553898", + "1.1500404251", + "1.1442255143", + "1.1362643247", + "1.0778421467", + "1.0833545467", + "1.0776137134", + "1.0497674428", + "1.0562891869", + "1.0853911841", + "1.0593142973", + "1.0572982697", + "1.0780526753", + "1.0757127806", + "1.0589709531", + "1.0843217247", + "1.0863965145", + "1.0850656213", + "1.0994568388", + "1.1011790007", + "1.1011790007", + "1.1078245834", + "1.1078245834", + "1.1078245834", + "1.1078245834", + "1.1078245834", + "1.1078245834", + "1.1078245834", + "1.1078245834", + "1.1037452207", + "1.1040909579", + "1.0976592503", + "1.1081517249", + "1.107246483", + "1.1033483134", + "1.1016056398", + "1.1029242096", + "1.0994223291", + "1.0943445808", + "1.0976897064", + "1.1031354732", + "1.0985972815", + "1.0835973254", + "1.0919684403", + "1.0866930551", + "1.1028409961", + "1.0981437069", + "1.1022772762", + "1.0802375656", + "1.0748373818", + "1.0889037369", + "1.0995641459", + "1.1163611889", + "1.0987708987", + "1.0887757802", + "1.0874579626", + "1.0682075827", + "1.0810860717", + "1.1399585167", + "1.134806605", + "1.2017028623", + "1.1678636063", + "1.1050549655", + "1.1087812223", + "1.1115146894", + "1.1044106079", + "1.1044106079", + "1.0857867057", + "1.088690852", + "1.0805903353", + "1.116116034", + "1.0528934845", + "1.0308025711", + "1.0486669274", + "1.0353959321", + "1.0358215245", + "1.1540732381", + "1.1612636889", + "1.1827047018", + "0.9873009861", + "1.1570499394", + "1.1637251735", + "1.1483620812", + "1.1679960864", + "1.1571831724", + "1.1622496587", + "1.1537533811", + "1.146803276", + "1.1376735789", + "1.1383316993", + "1.1572456225", + "1.1303641786", + "1.1123999681", + "1.206287909", + "1.2076617827", + "1.1769733704", + "1.234553061", + "1.1721316485", + "1.1776255913", + "1.1746645662", + "1.1993715513", + "1.1885491025", + "1.0967060305", + "1.067795941", + "1.028984881", + "1.0068835878", + "0.9982417815", + "0.9931215904", + "1.0299932161", + "1.032488342", + "1.0043002731", + "0.9926623192", + "0.9962488282", + "1.065201939", + "1.0719103211", + "1.0415393745", + "1.1654574477", + "1.1599425523", + "1.1622836035", + "1.1200066773", + "1.1161526978", + "1.1540592715", + "1.1458824572", + "1.1146404347", + "1.1161997934", + "1.1342197871", + "1.0909149924", + "1.0800788634", + "1.0812394159", + "1.1147257573", + "1.1029022046", + "1.0842753474", + "1.1032639697", + "1.084595971", + "1.0984109132", + "1.0926283422", + "1.0915599602", + "1.1121184119", + "1.1079058645", + "1.0907868191", + "1.1250151931", + "1.1097809514", + "1.1148932604", + "1.1142865749", + "1.0786849445", + "1.0746647363", + "1.0591973847", + "1.0775438899", + "1.0744775151", + "1.0487859213", + "1.0317731734", + "1.0264655225", + "1.0312073071", + "1.0303486964", + "1.0631146563", + "1.0621339945", + "1.0861737921", + "1.0640647651", + "1.0245567731", + "1.0277211839", + "1.0527830759", + "1.0490741918", + "1.0248235751", + "1.0173662252", + "1.0197194845", + "1.0288970194", + "0.9546629225", + "0.9972660233", + "0.9815622526", + "0.9754004894", + "0.9691202446", + "0.957017627", + "0.9601879664", + "1.0023600558", + "1.436751887", + "1.5215300861", + "1.434065511", + "1.4192477989", + "1.3975751661", + "0.951252825", + "0.970057231", + "1.0199900961", + "0.9816293441", + "0.9968665471", + "1.1104036847", + "1.0641742918", + "1.085825966", + "1.0444926199", + "0.9578309314", + "0.9702132743", + "0.9767043455", + "1.0371308823", + "1.0283313497", + "1.0264126187", + "1.0524148998", + "1.0497224642", + "1.0409544086", + "1.0724750322", + "1.0805584967", + "1.0647472235", + "1.0381289737", + "1.0327834006", + "1.0381940765", + "1.0269009353", + "0.9718700405", + "0.9769548624", + "0.9761996389", + "1.0230112234", + "0.978440944", + "0.9608927456", + "1.0383175518", + "0.991584912", + "0.9666674495", + "0.9797029407", + "0.9503184271", + "0.9155320689", + "0.9996201047", + "1.0019738911", + "1.0067511008", + "1.0120966988", + "0.977795673", + "1.0384514223", + "1.0452875377", + "1.0417985352", + "1.0544636006", + "1.0405475578", + "1.0203316516", + "1.0117308829", + "1.0583827511", + "1.0776610238", + "1.1283400437", + "0.9712624275", + "0.9404351334", + "1.0334408473", + "1.0324241474", + "1.0196450717", + "0.9765697846", + "1.0413930988", + "1.0323363466", + "1.0349886089", + "1.0661279142", + "1.007786781", + "0.9930530782", + "0.9746779499", + "1.0029935886", + "0.9745006633", + "1.0296465806", + "1.0606399806", + "1.0832728284", + "1.0399566514", + "1.0113028629", + "1.0315497596", + "1.0113033712", + "0.9976893963", + "0.9624343254", + "0.9973838849", + "0.928473409", + "0.94573878", + "1.028547491", + "1.0169128302", + "1.0140144039", + "1.0241687111", + "1.0325315966", + "1.0218542354", + "1.033794803", + "1.0222613455", + "1.0197998389", + "0.9882107073", + "0.9942056131", + "1.0004636103", + "0.9876180649", + "1.0211567018", + "0.9533859135", + "1.0118838538", + "1.0090286212", + "0.9992691537", + "0.9984942773", + "1.0246364021", + "1.0012451653", + "0.9709390273", + "0.8856109279", + "0.8974154727", + "0.8984327486", + "0.8424559714", + "0.8545828919", + "0.8512944899", + "0.8326202908", + "0.8413022425", + "0.8372614556", + "0.8272983058", + "0.8530993324", + "0.8497879957", + "0.8131587174", + "0.8316971501", + "0.7894558911", + "0.7921348299", + "0.8061252452", + "0.8076263549", + "0.7942965098", + "0.7837751157", + "0.810529548", + "0.7964526009", + "0.7564463038", + "0.7638098394", + "0.9333774029", + "0.7537108941", + "0.7582552484", + "0.7618590223", + "0.7578064141", + "0.7249243874", + "0.7547330622", + "0.7747923044", + "0.7767850281", + "0.7748674287", + "0.7581843397", + "0.7570244101", + "0.7227880003", + "0.7250638018", + "0.8509471953", + "0.8621415514", + "0.7484283271", + "0.7540857389", + "0.7441570473", + "0.7082888667", + "0.7338972636", + "0.7246321491", + "0.7167674013", + "0.7159134709", + "0.7234380268", + "0.717430553", + "0.7364994719", + "0.7304231551", + "0.7421455059", + "0.7369127301", + "0.7236964809", + "0.7117627792", + "0.7214235051", + "0.7172700208", + "0.7231723234", + "0.7152239786", + "0.6906634429", + "0.7000764094", + "0.693907994", + "0.7219391816", + "0.719634234", + "0.2977626335", + "0.3115937563", + "0.324285867", + "0.3552048397", + "0.3588287386", + "0.3476155954", + "0.3636659933", + "0.3442159055", + "0.3406392044", + "0.3575562633", + "0.3473572551", + "0.3519160269", + "0.3599690486", + "0.3457542121", + "0.3375790055", + "0.397669985", + "0.3741322117", + "0.3744492377", + "0.3750926516", + "0.3696000569", + "0.3597054328", + "0.4198825092", + "0.3907913763", + "0.3130341423", + "0.3318491617", + "0.3516149199", + "0.3277246102", + "0.3094279849", + "0.290898099", + "0.3072032905", + "0.3145596907", + "0.2969578677", + "0.3524659335", + "0.3586371906", + "0.3623548481", + "0.3976169397", + "0.3516285577", + "0.3773043654", + "0.0", + "0.0456705521", + "0.5644755128", + "0.5754642014", + "0.5095354919", + "0.5108123683", + "0.4689955204", + "0.4854146914", + "0.4837983573", + "0.5075374867", + "0.4949620255", + "0.4727592058", + "0.6539502115", + "0.6602495471", + "0.6402512417", + "0.6527796876", + "0.6513056899", + "0.6197074801", + "0.6295066196", + "0.6784351696", + "0.7138593327", + "0.6886721534", + "0.6693603512", + "0.618214276", + "0.6300128767", + "0.6297063265", + "0.6605222219", + "0.6608799177", + "0.5935973966", + "0.731370003", + "0.7359536442", + "0.7456972202", + "0.7254587643", + "0.6871540841", + "0.7565475809", + "0.7375112574", + "0.7423729456", + "0.6791610992", + "0.7108732126", + "0.7195092713", + "0.7311670255", + "0.713602486", + "0.7002381704", + "0.6646051888", + "0.6636908164", + "0.6701575062", + "0.7459957889", + "0.7261123012", + "0.8014951996", + "0.7555056465", + "0.7098480698", + "0.7160531067", + "0.7209933961", + "0.7156847374", + "0.7098831364", + "0.7373234054", + "0.7194669416", + "0.711417448", + "0.702404481", + "0.724341958", + "0.7188401132", + "0.7204740052", + "0.6844239141", + "0.6865803855", + "0.6597061726", + "0.7429698631", + "0.7187080868", + "0.7040662732", + "0.6843349273", + "0.820058618", + "0.8233184263", + "0.8512254076", + "0.8058612286", + "0.8099645446", + "0.8240130241", + "0.8377294899", + "0.8613687111", + "0.8025640194", + "0.7805778515", + "0.809184084", + "0.7774347394", + "0.7807485647", + "0.7937158115", + "0.7740704466", + "0.7813327908", + "0.7669679379", + "0.762879509", + "0.8446231417", + "0.8368146073", + "0.7911337978", + "0.8119007605", + "0.8085814898", + "0.8617908493", + "0.7891892036", + "0.7734004267", + "0.7910329536", + "0.7918560693", + "0.7932859315", + "0.8187069015", + "0.8306315509", + "0.8890955711", + "0.8924819653", + "0.8755276428", + "0.8607597805", + "0.8415336476", + "0.8106677683", + "1.1719498301", + "1.1963903066", + "1.1602350281", + "1.1708856328", + "1.1481300983", + "1.1343784774", + "1.2247268629", + "1.253571048", + "1.2546889702", + "1.1789581056", + "1.1764902303", + "1.1765569459", + "1.1703470517", + "1.1884342603", + "1.1644514045", + "1.140303574", + "1.1031004641", + "1.1112434617", + "1.0894248831", + "1.1101565326", + "1.0684409623", + "1.0829284952", + "1.0845809214", + "1.0901967624", + "1.082703947", + "1.0822385479", + "1.0794994", + "1.0698017729", + "1.0875089952", + "1.0676553596", + "1.0701025105", + "1.0658426761", + "1.0805011231", + "1.0996012252", + "1.0428991065", + "1.0652998807", + "1.0733375115", + "1.0724796019", + "1.0557362565", + "1.044958417", + "1.0450895747", + "1.0497822223", + "1.0530989961", + "1.0858196081", + "1.1170216966", + "1.1119497187", + "1.0358914482", + "1.0367827332", + "1.0320344215", + "1.0380836716", + "0.9591153536", + "0.8560720365", + "0.8697045495", + "1.1089316512", + "1.316782277", + "1.0704228401", + "1.1309381256", + "1.1323300746", + "1.1081934672", + "1.1158719704", + "1.1385923614", + "1.1283938935", + "1.1458029895", + "1.1469570509", + "1.1435197209", + "1.1431807625", + "1.1699652348", + "1.1399227171", + "1.1435619956", + "1.1473865771", + "1.1476061109", + "1.1109587465", + "1.1158350617", + "1.1368811018", + "1.1173332888", + "1.1246740359", + "1.0765854505", + "1.0690335448", + "1.0997461258", + "1.0959218788", + "1.108270971", + "1.1131286068", + "1.1077732525", + "1.1073366823", + "1.0983878111", + "1.1104042313", + "1.08805349", + "1.1040020086", + "1.1127147477", + "1.1084294658", + "1.1166270322", + "1.1318832537", + "1.1273526012", + "1.0684468972", + "1.1061974074", + "1.096698804", + "1.0587928753", + "1.3289682028", + "1.3616048606", + "1.3270814213", + "1.3357602748", + "1.309650731", + "1.1234408911", + "0.9767111192", + "0.9687436939", + "1.022078805", + "0.9853508903", + "0.9903913814", + "0.9881607833", + "0.9758143626", + "0.9807569637", + "0.9340066792", + "0.9893021553", + "0.983664404", + "1.0291498269", + "1.0072450051", + "0.9995997689", + "0.9869298949", + "0.8998187596", + "0.9037363757", + "1.0118911009", + "0.9944471046", + "0.9983944171", + "0.9932067661", + "0.9657906333", + "1.0548659983", + "1.0024355644", + "1.0024819393", + "1.0995308092", + "1.130077772", + "1.0854895857", + "1.0924819571", + "1.0652456123", + "1.0706334105", + "1.0698005326", + "1.061967217", + "1.0045878351", + "1.1532015874", + "1.2073665549", + "1.1743894782", + "1.1635878773", + "1.1708937919", + "1.1114889533", + "1.1240897842", + "1.1311473972", + "1.1263853649", + "1.1757484064", + "1.1817352786", + "1.1911341277", + "1.2032255079", + "1.1384015479", + "1.180190269", + "1.1783218527", + "1.1047362905", + "1.1028640195", + "1.1310597932", + "1.1241631623", + "1.1759819136", + "1.0796578024", + "1.024987144", + "1.0428008749", + "1.0055454791", + "1.0379452066", + "1.1211759674", + "1.1344183236", + "1.149334551", + "1.1645709582", + "1.0783395537", + "1.0107286028", + "1.0711113207", + "1.143815615", + "0.9896501098", + "1.0185087119", + "1.0246309605", + "1.0814203324", + "1.0347504505", + "1.0412640963", + "1.0460464423", + "1.0272950816", + "1.0535416285", + "1.1208193305", + "1.1273734947", + "1.1551590097", + "1.1681619999", + "1.1647822999", + "1.0434192195", + "1.0704635266", + "1.0337525711", + "1.0391697896", + "1.0911544015", + "1.1234676228", + "1.1154030012", + "1.1238184646", + "1.1109131219", + "1.0980200359", + "1.1025665239", + "1.1561918158", + "1.2115776372", + "1.3083349584", + "1.2214593763", + "1.2208290714", + "1.2486548231", + "1.1860424634", + "1.2528885827", + "1.2479346562", + "1.2129095555", + "1.2221730212", + "1.1174591401", + "1.4090162054", + "1.3351708967", + "1.3443599171", + "1.2718695448", + "1.2841603864", + "1.2737752869", + "1.375978896", + "1.3032105338", + "1.3413981487", + "1.3354810229", + "1.3133655049", + "1.2425927184", + "1.2453375619", + "1.289996112", + "1.2837568704", + "1.288345671", + "1.2537440832", + "1.2453250587", + "1.2372882173", + "1.2969373388", + "1.2557659829", + "1.2634346853", + "1.2339555141", + "1.1867024338", + "1.2902650861", + "1.2283491972", + "1.2214825525", + "1.2417107844", + "1.317855042", + "1.3301266006", + "1.3387154638", + "1.3338276952", + "1.3276229688", + "1.317463174", + "1.3164812852", + "1.3098282033", + "1.4280230808", + "1.4089063559", + "1.2828414758", + "1.3321268188", + "1.3320541369", + "1.3256949085", + "1.328207679", + "1.3942901791", + "1.3888401567", + "1.3437186173", + "1.3296832737", + "1.3270303716", + "1.3155342876", + "1.3342676813", + "1.3027440571", + "1.2936999068", + "1.2895383469", + "1.3050990408", + "1.3005693517", + "1.291467404", + "1.2980373184", + "1.3127126322", + "1.3274632047", + "1.3363975715", + "1.3628622592", + "1.3143928667", + "1.3384046344", + "1.349329658", + "1.2930180126", + "1.3473377517", + "1.3222698994", + "1.2982073103", + "1.2977085395", + "1.3054018566", + "1.2993667469", + "1.2724988238", + "1.2804438819", + "1.2835860913", + "1.2548663758" + ] + }, + "essential_compounds": [ + "4hbz", + "ac", + "acald", + "acgam", + "actn_R", + "ade", + "adocbl", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arg_L", + "arsenb", + "asn_L", + "asp_L", + "btn", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "chols", + "chtbs", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "ddca", + "drib", + "etha", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "gal", + "galt", + "gbbtn", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "h2", + "h2o", + "h", + "hdca", + "hg2", + "his_L", + "hxan", + "ile_L", + "k", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "o2", + "ocdca", + "orn", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppi", + "pro_L", + "ptrc", + "pydx", + "rib_D", + "ribflv", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "so4", + "spmd", + "succ", + "sucr", + "thm", + "thr_L", + "tre", + "trp_L", + "ttdca", + "tyr_L", + "ura", + "urea", + "val_L", + "xan", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_431.json b/agents/agora/agent_431.json new file mode 100644 index 0000000000000000000000000000000000000000..5755b4d06ce481c0cb5616759f9c97a995534923 --- /dev/null +++ b/agents/agora/agent_431.json @@ -0,0 +1,931 @@ +{ + "id": 431, + "name": "Gemella_sanguinis_M325", + "N_R": 953, + "taxonomy": { + "k": 431, + "tax_distance": [ + "2.4126386618", + "1.9947607945", + "1.9880615654", + "2.2146442725", + "1.8960441986", + "1.9411728855", + "1.9224675877", + "1.9195249934", + "1.9835065917", + "1.9018624998", + "1.9189272032", + "2.027049517", + "2.0000672953", + "2.2280812532", + "2.2764380703", + "2.3067705809", + "2.187120183", + "2.1960442998", + "2.2315187754", + "1.7645030914", + "1.6998321147", + "1.449310856", + "1.3826604236", + "1.2611807469", + "1.0870014681", + "1.08119026", + "1.0778356886", + "1.080196743", + "1.064430453", + "1.0557446901", + "1.0581955962", + "1.1597815323", + "1.1693193351", + "1.1656854251", + "1.1813814937", + "1.1498799137", + "1.1726258578", + "1.1909317693", + "1.1718998063", + "1.4648404653", + "1.2096820866", + "1.1283210306", + "1.1350863368", + "1.1376939169", + "1.1344621749", + "1.1374355566", + "1.1325369517", + "1.132921987", + "1.1271070762", + "1.1191458866", + "1.0607237086", + "1.0662361086", + "1.0604952753", + "1.0326490047", + "1.0391707488", + "1.068272746", + "1.0421958592", + "1.0401798316", + "1.0609342372", + "1.0585943425", + "1.041852515", + "1.0672032866", + "1.0692780764", + "1.0679471832", + "1.0823384007", + "1.0840605626", + "1.0840605626", + "1.0907061453", + "1.0907061453", + "1.0907061453", + "1.0907061453", + "1.0907061453", + "1.0907061453", + "1.0907061453", + "1.0907061453", + "1.0866267826", + "1.0869725198", + "1.0805408122", + "1.0910332868", + "1.0901280449", + "1.0862298753", + "1.0844872017", + "1.0858057715", + "1.082303891", + "1.0772261427", + "1.0805712683", + "1.0860170351", + "1.0814788434", + "1.0664788873", + "1.0748500022", + "1.069574617", + "1.085722558", + "1.0810252688", + "1.0851588381", + "1.0631191275", + "1.0577189437", + "1.0717852988", + "1.0824457078", + "1.0992427508", + "1.0816524606", + "1.0716573421", + "1.0703395245", + "1.0510891446", + "1.0639676336", + "1.1228400786", + "1.1176881669", + "1.1845844242", + "1.1507451682", + "1.0879365274", + "1.0916627842", + "1.0943962513", + "1.0872921698", + "1.0872921698", + "1.0686682676", + "1.0715724139", + "1.0634718972", + "1.0989975959", + "1.0357750464", + "1.013684133", + "1.0315484893", + "1.018277494", + "1.0187030864", + "1.1369548", + "1.1441452508", + "1.1655862637", + "0.970182548", + "1.1399315013", + "1.1466067354", + "1.1312436431", + "1.1508776483", + "1.1400647343", + "1.1451312206", + "1.136634943", + "1.1296848379", + "1.1205551408", + "1.1212132612", + "1.1401271844", + "1.1132457405", + "1.09528153", + "1.1891694709", + "1.1905433446", + "1.1598549323", + "1.2174346229", + "1.1550132104", + "1.1605071532", + "1.1575461281", + "1.1822531132", + "1.1714306644", + "1.0795875924", + "1.0506775029", + "1.0118664429", + "0.9897651497", + "0.9811233434", + "0.9760031523", + "1.012874778", + "1.0153699039", + "0.987181835", + "0.9755438811", + "0.9791303901", + "1.0480835009", + "1.054791883", + "1.0244209364", + "1.1483390096", + "1.1428241142", + "1.1451651654", + "1.1028882392", + "1.0990342597", + "1.1369408334", + "1.1287640191", + "1.0975219966", + "1.0990813553", + "1.117101349", + "1.0737965543", + "1.0629604253", + "1.0641209778", + "1.0976073192", + "1.0857837665", + "1.0671569093", + "1.0861455316", + "1.0674775329", + "1.0812924751", + "1.0755099041", + "1.0744415221", + "1.0949999738", + "1.0907874264", + "1.073668381", + "1.107896755", + "1.0926625133", + "1.0977748223", + "1.0971681368", + "1.0615665064", + "1.0575462982", + "1.0420789466", + "1.0604254518", + "1.057359077", + "1.0316674832", + "1.0146547353", + "1.0093470844", + "1.014088869", + "1.0132302583", + "1.0459962182", + "1.0450155564", + "1.069055354", + "1.046946327", + "1.007438335", + "1.0106027458", + "1.0356646378", + "1.0319557537", + "1.007705137", + "1.0002477871", + "1.0026010464", + "1.0117785813", + "0.9375444844", + "0.9801475852", + "0.9644438145", + "0.9582820513", + "0.9520018065", + "0.9398991889", + "0.9430695283", + "0.9852416177", + "1.4196334489", + "1.504411648", + "1.4169470729", + "1.4021293608", + "1.380456728", + "0.9341343869", + "0.9529387929", + "1.002871658", + "0.964510906", + "0.979748109", + "1.0932852466", + "1.0470558537", + "1.0687075279", + "1.0273741818", + "0.9407124933", + "0.9530948362", + "0.9595859074", + "1.0200124442", + "1.0112129116", + "1.0092941806", + "1.0352964617", + "1.0326040261", + "1.0238359705", + "1.0553565941", + "1.0634400586", + "1.0476287854", + "1.0210105356", + "1.0156649625", + "1.0210756384", + "1.0097824972", + "0.9547516024", + "0.9598364243", + "0.9590812008", + "1.0058927853", + "0.9613225059", + "0.9437743075", + "1.0211991137", + "0.9744664739", + "0.9495490114", + "0.9625845026", + "0.933199989", + "0.8984136308", + "0.9825016666", + "0.984855453", + "0.9896326627", + "0.9949782607", + "0.9606772349", + "1.0213329842", + "1.0281690996", + "1.0246800971", + "1.0373451625", + "1.0234291197", + "1.0032132135", + "0.9946124448", + "1.041264313", + "1.0605425857", + "1.1112216056", + "0.9541439894", + "0.9233166953", + "1.0163224092", + "1.0153057093", + "1.0025266336", + "0.9594513465", + "1.0242746607", + "1.0152179085", + "1.0178701708", + "1.0490094761", + "0.9906683429", + "0.9759346401", + "0.9575595118", + "0.9858751505", + "0.9573822252", + "1.0125281425", + "1.0435215425", + "1.0661543903", + "1.0228382133", + "0.9941844248", + "1.0144313215", + "0.9941849331", + "0.9805709582", + "0.9453158873", + "0.9802654468", + "0.9113549709", + "0.9286203419", + "1.0114290529", + "0.9997943921", + "0.9968959658", + "1.007050273", + "1.0154131585", + "1.0047357973", + "1.0166763649", + "1.0051429074", + "1.0026814008", + "0.9710922692", + "0.977087175", + "0.9833451722", + "0.9704996268", + "1.0040382637", + "0.9362674754", + "0.9947654157", + "0.9919101831", + "0.9821507156", + "0.9813758392", + "1.007517964", + "0.9841267272", + "0.9538205892", + "0.8684924898", + "0.8802970346", + "0.8813143105", + "0.8253375333", + "0.8374644538", + "0.8341760518", + "0.8155018527", + "0.8241838044", + "0.8201430175", + "0.8101798677", + "0.8359808943", + "0.8326695576", + "0.7960402793", + "0.814578712", + "0.772337453", + "0.7750163918", + "0.7890068071", + "0.7905079168", + "0.7771780717", + "0.7666566776", + "0.7934111099", + "0.7793341628", + "0.7393278657", + "0.7466914013", + "0.9162589648", + "0.736592456", + "0.7411368103", + "0.7447405842", + "0.740687976", + "0.7078059493", + "0.7376146241", + "0.7576738663", + "0.75966659", + "0.7577489906", + "0.7410659016", + "0.739905972", + "0.7056695622", + "0.7079453637", + "0.8338287572", + "0.8450231133", + "0.731309889", + "0.7369673008", + "0.7270386092", + "0.6911704286", + "0.7167788255", + "0.707513711", + "0.6996489632", + "0.6987950328", + "0.7063195887", + "0.7003121149", + "0.7193810338", + "0.713304717", + "0.7250270678", + "0.719794292", + "0.7065780428", + "0.6946443411", + "0.704305067", + "0.7001515827", + "0.7060538853", + "0.6981055405", + "0.6735450048", + "0.6829579713", + "0.6767895559", + "0.7048207435", + "0.7025157959", + "0.2806441954", + "0.2944753182", + "0.3071674289", + "0.3380864016", + "0.3417103005", + "0.3304971573", + "0.3465475552", + "0.3270974674", + "0.3235207663", + "0.3404378252", + "0.330238817", + "0.3347975888", + "0.3428506105", + "0.328635774", + "0.3204605674", + "0.3805515469", + "0.3570137736", + "0.3573307996", + "0.3579742135", + "0.3524816188", + "0.3425869947", + "0.4027640711", + "0.3736729382", + "0.2959157042", + "0.3147307236", + "0.3344964818", + "0.3106061721", + "0.2923095468", + "0.2737796609", + "0.2900848524", + "0.2974412526", + "0.2798394296", + "0.3353474954", + "0.3415187525", + "0.34523641", + "0.3804985016", + "0.3345101196", + "0.3601859273", + "0.0456705521", + "0.0", + "0.5473570747", + "0.5583457633", + "0.4924170538", + "0.4936939302", + "0.4518770823", + "0.4682962533", + "0.4666799192", + "0.4904190486", + "0.4778435874", + "0.4556407677", + "0.6368317734", + "0.643131109", + "0.6231328036", + "0.6356612495", + "0.6341872518", + "0.602589042", + "0.6123881815", + "0.6613167315", + "0.6967408946", + "0.6715537153", + "0.6522419131", + "0.6010958379", + "0.6128944386", + "0.6125878884", + "0.6434037838", + "0.6437614796", + "0.5764789585", + "0.7142515649", + "0.7188352061", + "0.7285787821", + "0.7083403262", + "0.670035646", + "0.7394291428", + "0.7203928193", + "0.7252545075", + "0.6620426611", + "0.6937547745", + "0.7023908332", + "0.7140485874", + "0.6964840479", + "0.6831197323", + "0.6474867507", + "0.6465723783", + "0.6530390681", + "0.7288773508", + "0.7089938631", + "0.7843767615", + "0.7383872084", + "0.6927296317", + "0.6989346686", + "0.703874958", + "0.6985662993", + "0.6927646983", + "0.7202049673", + "0.7023485035", + "0.6942990099", + "0.6852860429", + "0.7072235199", + "0.7017216751", + "0.7033555671", + "0.667305476", + "0.6694619474", + "0.6425877345", + "0.725851425", + "0.7015896487", + "0.6869478351", + "0.6672164892", + "0.8029401799", + "0.8061999882", + "0.8341069695", + "0.7887427905", + "0.7928461065", + "0.806894586", + "0.8206110518", + "0.844250273", + "0.7854455813", + "0.7634594134", + "0.7920656459", + "0.7603163013", + "0.7636301266", + "0.7765973734", + "0.7569520085", + "0.7642143527", + "0.7498494998", + "0.7457610709", + "0.8275047036", + "0.8196961692", + "0.7740153597", + "0.7947823224", + "0.7914630517", + "0.8446724112", + "0.7720707655", + "0.7562819886", + "0.7739145155", + "0.7747376312", + "0.7761674934", + "0.8015884634", + "0.8135131128", + "0.871977133", + "0.8753635272", + "0.8584092047", + "0.8436413424", + "0.8244152095", + "0.7935493302", + "1.154831392", + "1.1792718685", + "1.14311659", + "1.1537671947", + "1.1310116602", + "1.1172600393", + "1.2076084248", + "1.2364526099", + "1.2375705321", + "1.1618396675", + "1.1593717922", + "1.1594385078", + "1.1532286136", + "1.1713158222", + "1.1473329664", + "1.1231851359", + "1.085982026", + "1.0941250236", + "1.072306445", + "1.0930380945", + "1.0513225242", + "1.0658100571", + "1.0674624833", + "1.0730783243", + "1.0655855089", + "1.0651201098", + "1.0623809619", + "1.0526833348", + "1.0703905571", + "1.0505369215", + "1.0529840724", + "1.048724238", + "1.063382685", + "1.0824827871", + "1.0257806684", + "1.0481814426", + "1.0562190734", + "1.0553611638", + "1.0386178184", + "1.0278399789", + "1.0279711366", + "1.0326637842", + "1.035980558", + "1.06870117", + "1.0999032585", + "1.0948312806", + "1.0187730101", + "1.0196642951", + "1.0149159834", + "1.0209652335", + "0.9419969155", + "0.8389535984", + "0.8525861114", + "1.0918132131", + "1.2996638389", + "1.053304402", + "1.1138196875", + "1.1152116365", + "1.0910750291", + "1.0987535323", + "1.1214739233", + "1.1112754554", + "1.1286845514", + "1.1298386128", + "1.1264012828", + "1.1260623244", + "1.1528467967", + "1.122804279", + "1.1264435575", + "1.130268139", + "1.1304876728", + "1.0938403084", + "1.0987166236", + "1.1197626637", + "1.1002148507", + "1.1075555978", + "1.0594670124", + "1.0519151067", + "1.0826276877", + "1.0788034407", + "1.0911525329", + "1.0960101687", + "1.0906548144", + "1.0902182442", + "1.081269373", + "1.0932857932", + "1.0709350519", + "1.0868835705", + "1.0955963096", + "1.0913110277", + "1.0995085941", + "1.1147648156", + "1.1102341631", + "1.0513284591", + "1.0890789693", + "1.0795803659", + "1.0416744372", + "1.3118497647", + "1.3444864225", + "1.3099629832", + "1.3186418367", + "1.2925322929", + "1.106322453", + "0.9595926811", + "0.9516252558", + "1.0049603669", + "0.9682324522", + "0.9732729433", + "0.9710423452", + "0.9586959245", + "0.9636385256", + "0.9168882411", + "0.9721837172", + "0.9665459659", + "1.0120313888", + "0.990126567", + "0.9824813308", + "0.9698114568", + "0.8827003215", + "0.8866179376", + "0.9947726628", + "0.9773286665", + "0.981275979", + "0.976088328", + "0.9486721952", + "1.0377475602", + "0.9853171263", + "0.9853635012", + "1.0824123711", + "1.1129593339", + "1.0683711476", + "1.075363519", + "1.0481271742", + "1.0535149724", + "1.0526820945", + "1.0448487789", + "0.987469397", + "1.1360831493", + "1.1902481168", + "1.1572710401", + "1.1464694392", + "1.1537753538", + "1.0943705152", + "1.1069713461", + "1.1140289591", + "1.1092669268", + "1.1586299683", + "1.1646168405", + "1.1740156896", + "1.1861070698", + "1.1212831098", + "1.1630718309", + "1.1612034146", + "1.0876178524", + "1.0857455814", + "1.1139413551", + "1.1070447242", + "1.1588634755", + "1.0625393643", + "1.0078687059", + "1.0256824368", + "0.988427041", + "1.0208267685", + "1.1040575293", + "1.1172998855", + "1.1322161129", + "1.1474525201", + "1.0612211156", + "0.9936101647", + "1.0539928826", + "1.1266971769", + "0.9725316717", + "1.0013902738", + "1.0075125224", + "1.0643018943", + "1.0176320124", + "1.0241456582", + "1.0289280042", + "1.0101766435", + "1.0364231904", + "1.1037008924", + "1.1102550566", + "1.1380405716", + "1.1510435618", + "1.1476638618", + "1.0263007814", + "1.0533450885", + "1.016634133", + "1.0220513515", + "1.0740359634", + "1.1063491847", + "1.0982845631", + "1.1067000265", + "1.0937946838", + "1.0809015978", + "1.0854480858", + "1.1390733777", + "1.1944591991", + "1.2912165203", + "1.2043409382", + "1.2037106333", + "1.231536385", + "1.1689240253", + "1.2357701446", + "1.2308162181", + "1.1957911174", + "1.2050545831", + "1.100340702", + "1.3918977673", + "1.3180524586", + "1.327241479", + "1.2547511067", + "1.2670419483", + "1.2566568488", + "1.3588604579", + "1.2860920957", + "1.3242797106", + "1.3183625848", + "1.2962470668", + "1.2254742803", + "1.2282191238", + "1.2728776739", + "1.2666384323", + "1.2712272329", + "1.2366256451", + "1.2282066206", + "1.2201697792", + "1.2798189007", + "1.2386475448", + "1.2463162472", + "1.216837076", + "1.1695839957", + "1.273146648", + "1.2112307591", + "1.2043641144", + "1.2245923463", + "1.3007366039", + "1.3130081625", + "1.3215970257", + "1.3167092571", + "1.3105045307", + "1.3003447359", + "1.2993628471", + "1.2927097652", + "1.4109046427", + "1.3917879178", + "1.2657230377", + "1.3150083807", + "1.3149356988", + "1.3085764704", + "1.3110892409", + "1.377171741", + "1.3717217186", + "1.3266001792", + "1.3125648356", + "1.3099119335", + "1.2984158495", + "1.3171492432", + "1.285625619", + "1.2765814687", + "1.2724199088", + "1.2879806027", + "1.2834509136", + "1.2743489659", + "1.2809188803", + "1.2955941941", + "1.3103447666", + "1.3192791334", + "1.3457438211", + "1.2972744286", + "1.3212861963", + "1.3322112199", + "1.2758995745", + "1.3302193136", + "1.3051514613", + "1.2810888722", + "1.2805901014", + "1.2882834185", + "1.2822483088", + "1.2553803857", + "1.2633254438", + "1.2664676532", + "1.2377479377" + ] + }, + "essential_compounds": [ + "26dap_M", + "C02528", + "ac", + "acgam", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_L", + "arbt", + "asn_L", + "asp_L", + "btn", + "but", + "ca2", + "cd2", + "cellb", + "cgly", + "cholate", + "cl", + "co2", + "cobalt2", + "cro4", + "csn", + "cu2", + "cys_L", + "dgchol", + "fe2", + "fe3", + "for", + "fru", + "galt", + "gchola", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "h2o", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "k", + "lac_D", + "leu_L", + "lys_L", + "malt", + "man", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "na1", + "nac", + "nh4", + "nmn", + "no3", + "o2", + "pb", + "phe_L", + "pi", + "pnto_R", + "pro_L", + "ptrc", + "pydx", + "ribflv", + "salcn", + "ser_L", + "so4", + "spmd", + "taur", + "tchola", + "tdchola", + "thm", + "thr_L", + "thymd", + "trp_L", + "tyr_L", + "urea", + "val_L", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_432.json b/agents/agora/agent_432.json new file mode 100644 index 0000000000000000000000000000000000000000..1dcca8d064d2d50199774d020257c539c31871cd --- /dev/null +++ b/agents/agora/agent_432.json @@ -0,0 +1,942 @@ +{ + "id": 432, + "name": "Geobacillus_stearothermophilus_ATCC_7953", + "N_R": 1145, + "taxonomy": { + "k": 432, + "tax_distance": [ + "2.5156664279", + "2.0977885606", + "2.0910893315", + "2.3176720386", + "1.9990719647", + "2.0442006516", + "2.0254953538", + "2.0225527595", + "2.0865343578", + "2.0048902659", + "2.0219549693", + "2.1300772831", + "2.1030950614", + "2.3311090193", + "2.3794658364", + "2.409798347", + "2.2901479491", + "2.2990720659", + "2.3345465415", + "1.8675308575", + "1.8028598808", + "1.5523386221", + "1.4856881897", + "1.364208513", + "1.1900292342", + "1.1842180261", + "1.1808634547", + "1.1832245091", + "1.1674582191", + "1.1587724562", + "1.1612233623", + "1.2628092984", + "1.2723471012", + "1.2687131912", + "1.2844092598", + "1.2529076798", + "1.2756536239", + "1.2939595354", + "1.2749275724", + "1.5678682314", + "1.3127098527", + "1.2313487967", + "1.2381141029", + "1.240721683", + "1.237489941", + "1.2404633227", + "1.2355647178", + "1.2359497531", + "1.2301348423", + "1.2221736527", + "1.1637514747", + "1.1692638747", + "1.1635230414", + "1.1356767708", + "1.1421985149", + "1.1713005121", + "1.1452236253", + "1.1432075977", + "1.1639620033", + "1.1616221086", + "1.1448802811", + "1.1702310527", + "1.1723058425", + "1.1709749493", + "1.1853661668", + "1.1870883287", + "1.1870883287", + "1.1937339114", + "1.1937339114", + "1.1937339114", + "1.1937339114", + "1.1937339114", + "1.1937339114", + "1.1937339114", + "1.1937339114", + "1.1896545487", + "1.1900002859", + "1.1835685783", + "1.1940610529", + "1.193155811", + "1.1892576414", + "1.1875149678", + "1.1888335376", + "1.1853316571", + "1.1802539088", + "1.1835990344", + "1.1890448012", + "1.1845066095", + "1.1695066534", + "1.1778777683", + "1.1726023831", + "1.1887503241", + "1.1840530349", + "1.1881866042", + "1.1661468936", + "1.1607467098", + "1.1748130649", + "1.1854734739", + "1.2022705169", + "1.1846802267", + "1.1746851082", + "1.1733672906", + "1.1541169107", + "1.1669953997", + "1.2258678447", + "1.220715933", + "1.2876121903", + "1.2537729343", + "1.1909642935", + "1.1946905503", + "1.1974240174", + "1.1903199359", + "1.1903199359", + "1.1716960337", + "1.17460018", + "1.1664996633", + "1.202025362", + "1.1388028125", + "1.1167118991", + "1.1345762554", + "1.1213052601", + "1.1217308525", + "1.2399825661", + "1.2471730169", + "1.2686140298", + "1.0732103141", + "1.2429592674", + "1.2496345015", + "1.2342714092", + "1.2539054144", + "1.2430925004", + "1.2481589867", + "1.2396627091", + "1.232712604", + "1.2235829069", + "1.2242410273", + "1.2431549505", + "1.2162735066", + "1.1983092961", + "1.292197237", + "1.2935711107", + "1.2628826984", + "1.320462389", + "1.2580409765", + "1.2635349193", + "1.2605738942", + "1.2852808793", + "1.2744584305", + "1.1826153585", + "1.153705269", + "1.114894209", + "1.0927929158", + "1.0841511095", + "1.0790309184", + "1.1159025441", + "1.11839767", + "1.0902096011", + "1.0785716472", + "1.0821581562", + "1.151111267", + "1.1578196491", + "1.1274487025", + "1.2513667757", + "1.2458518803", + "1.2481929315", + "1.2059160053", + "1.2020620258", + "1.2399685995", + "1.2317917852", + "1.2005497627", + "1.2021091214", + "1.2201291151", + "1.1768243204", + "1.1659881914", + "1.1671487439", + "1.2006350853", + "1.1888115326", + "1.1701846754", + "1.1891732977", + "1.170505299", + "1.1843202412", + "1.1785376702", + "1.1774692882", + "1.1980277399", + "1.1938151925", + "1.1766961471", + "1.2109245211", + "1.1956902794", + "1.2008025884", + "1.2001959029", + "1.1645942725", + "1.1605740643", + "1.1451067127", + "1.1634532179", + "1.1603868431", + "1.1346952493", + "1.1176825014", + "1.1123748505", + "1.1171166351", + "1.1162580244", + "1.1490239843", + "1.1480433225", + "1.1720831201", + "1.1499740931", + "1.1104661011", + "1.1136305119", + "1.1386924039", + "1.1349835198", + "1.1107329031", + "1.1032755532", + "1.1056288125", + "1.1148063474", + "1.0405722505", + "1.0831753513", + "1.0674715806", + "1.0613098174", + "1.0550295726", + "1.042926955", + "1.0460972944", + "1.0882693838", + "1.522661215", + "1.6074394141", + "1.519974839", + "1.5051571269", + "1.4834844941", + "1.037162153", + "1.055966559", + "1.1058994241", + "1.0675386721", + "1.0827758751", + "1.1963130127", + "1.1500836198", + "1.171735294", + "1.1304019479", + "1.0437402594", + "1.0561226023", + "1.0626136735", + "1.1230402103", + "1.1142406777", + "1.1123219467", + "1.1383242278", + "1.1356317922", + "1.1268637366", + "1.1583843602", + "1.1664678247", + "1.1506565515", + "1.1240383017", + "1.1186927286", + "1.1241034045", + "1.1128102633", + "1.0577793685", + "1.0628641904", + "1.0621089669", + "1.1089205514", + "1.064350272", + "1.0468020736", + "1.1242268798", + "1.07749424", + "1.0525767775", + "1.0656122687", + "1.0362277551", + "1.0014413969", + "1.0855294327", + "1.0878832191", + "1.0926604288", + "1.0980060268", + "1.063705001", + "1.1243607503", + "1.1311968657", + "1.1277078632", + "1.1403729286", + "1.1264568858", + "1.1062409796", + "1.0976402109", + "1.1442920791", + "1.1635703518", + "1.2142493717", + "1.0571717555", + "1.0263444614", + "1.1193501753", + "1.1183334754", + "1.1055543997", + "1.0624791126", + "1.1273024268", + "1.1182456746", + "1.1208979369", + "1.1520372422", + "1.093696109", + "1.0789624062", + "1.0605872779", + "1.0889029166", + "1.0604099913", + "1.1155559086", + "1.1465493086", + "1.1691821564", + "1.1258659794", + "1.0972121909", + "1.1174590876", + "1.0972126992", + "1.0835987243", + "1.0483436534", + "1.0832932129", + "1.014382737", + "1.031648108", + "1.114456819", + "1.1028221582", + "1.0999237319", + "1.1100780391", + "1.1184409246", + "1.1077635634", + "1.119704131", + "1.1081706735", + "1.1057091669", + "1.0741200353", + "1.0801149411", + "1.0863729383", + "1.0735273929", + "1.1070660298", + "1.0392952415", + "1.0977931818", + "1.0949379492", + "1.0851784817", + "1.0844036053", + "1.1105457301", + "1.0871544933", + "1.0568483553", + "0.9715202559", + "0.9833248007", + "0.9843420766", + "0.9283652994", + "0.9404922199", + "0.9372038179", + "0.9185296188", + "0.9272115705", + "0.9231707836", + "0.9132076338", + "0.9390086604", + "0.9356973237", + "0.8990680454", + "0.9176064781", + "0.8753652191", + "0.8780441579", + "0.8920345732", + "0.8935356829", + "0.8802058378", + "0.8696844437", + "0.896438876", + "0.8823619289", + "0.8423556318", + "0.8497191674", + "1.0192867309", + "0.8396202221", + "0.8441645764", + "0.8477683503", + "0.8437157421", + "0.8108337154", + "0.8406423902", + "0.8607016324", + "0.8626943561", + "0.8607767567", + "0.8440936677", + "0.8429337381", + "0.8086973283", + "0.8109731298", + "0.9368565233", + "0.9480508794", + "0.8343376551", + "0.8399950669", + "0.8300663753", + "0.7941981947", + "0.8198065916", + "0.8105414771", + "0.8026767293", + "0.8018227989", + "0.8093473548", + "0.803339881", + "0.8224087999", + "0.8163324831", + "0.8280548339", + "0.8228220581", + "0.8096058089", + "0.7976721072", + "0.8073328331", + "0.8031793488", + "0.8090816514", + "0.8011333066", + "0.7765727709", + "0.7859857374", + "0.779817322", + "0.8078485096", + "0.805543562", + "0.5999700439", + "0.6138011667", + "0.6264932774", + "0.6574122501", + "0.661036149", + "0.6498230058", + "0.6658734037", + "0.6464233159", + "0.6428466148", + "0.6597636737", + "0.6495646655", + "0.6541234373", + "0.662176459", + "0.6479616225", + "0.6397864159", + "0.6998773954", + "0.6763396221", + "0.6766566481", + "0.677300062", + "0.6718074673", + "0.6619128432", + "0.7220899196", + "0.6929987867", + "0.6152415527", + "0.6340565721", + "0.6538223303", + "0.6299320206", + "0.6116353953", + "0.5931055094", + "0.6094107009", + "0.6167671011", + "0.5991652781", + "0.6546733439", + "0.660844601", + "0.6645622585", + "0.6998243501", + "0.6538359681", + "0.6795117758", + "0.5644755128", + "0.5473570747", + "0.0", + "0.0513753346", + "0.1689857815", + "0.2375997861", + "0.3782913204", + "0.5054662364", + "0.5697076853", + "0.5934468147", + "0.5808713535", + "0.5586685338", + "0.7398595395", + "0.7461588751", + "0.7261605697", + "0.7386890156", + "0.7372150179", + "0.7056168081", + "0.7154159476", + "0.7643444976", + "0.7997686607", + "0.7745814814", + "0.7552696792", + "0.704123604", + "0.7159222047", + "0.7156156545", + "0.7464315499", + "0.7467892457", + "0.6795067246", + "0.817279331", + "0.8218629722", + "0.8316065482", + "0.8113680923", + "0.7730634121", + "0.8424569089", + "0.8234205854", + "0.8282822736", + "0.7650704272", + "0.7967825406", + "0.8054185993", + "0.8170763535", + "0.799511814", + "0.7861474984", + "0.7505145168", + "0.7496001444", + "0.7560668342", + "0.8319051169", + "0.8120216292", + "0.8874045276", + "0.8414149745", + "0.7957573978", + "0.8019624347", + "0.8069027241", + "0.8015940654", + "0.7957924644", + "0.8232327334", + "0.8053762696", + "0.797326776", + "0.788313809", + "0.810251286", + "0.8047494412", + "0.8063833332", + "0.7703332421", + "0.7724897135", + "0.7456155006", + "0.8288791911", + "0.8046174148", + "0.7899756012", + "0.7702442553", + "0.905967946", + "0.9092277543", + "0.9371347356", + "0.8917705566", + "0.8958738726", + "0.9099223521", + "0.9236388179", + "0.9472780391", + "0.8884733474", + "0.8664871795", + "0.895093412", + "0.8633440674", + "0.8666578927", + "0.8796251395", + "0.8599797746", + "0.8672421188", + "0.8528772659", + "0.848788837", + "0.9305324697", + "0.9227239353", + "0.8770431258", + "0.8978100885", + "0.8944908178", + "0.9477001773", + "0.8750985316", + "0.8593097547", + "0.8769422816", + "0.8777653973", + "0.8791952595", + "0.9046162295", + "0.9165408789", + "0.9750048991", + "0.9783912933", + "0.9614369708", + "0.9466691085", + "0.9274429756", + "0.8965770963", + "1.2578591581", + "1.2822996346", + "1.2461443561", + "1.2567949608", + "1.2340394263", + "1.2202878054", + "1.3106361909", + "1.339480376", + "1.3405982982", + "1.2648674336", + "1.2623995583", + "1.2624662739", + "1.2562563797", + "1.2743435883", + "1.2503607325", + "1.226212902", + "1.1890097921", + "1.1971527897", + "1.1753342111", + "1.1960658606", + "1.1543502903", + "1.1688378232", + "1.1704902494", + "1.1761060904", + "1.168613275", + "1.1681478759", + "1.165408728", + "1.1557111009", + "1.1734183232", + "1.1535646876", + "1.1560118385", + "1.1517520041", + "1.1664104511", + "1.1855105532", + "1.1288084345", + "1.1512092087", + "1.1592468395", + "1.1583889299", + "1.1416455845", + "1.130867745", + "1.1309989027", + "1.1356915503", + "1.1390083241", + "1.1717289361", + "1.2029310246", + "1.1978590467", + "1.1218007762", + "1.1226920612", + "1.1179437495", + "1.1239929996", + "1.0450246816", + "0.9419813645", + "0.9556138775", + "1.1948409792", + "1.402691605", + "1.1563321681", + "1.2168474536", + "1.2182394026", + "1.1941027952", + "1.2017812984", + "1.2245016894", + "1.2143032215", + "1.2317123175", + "1.2328663789", + "1.2294290489", + "1.2290900905", + "1.2558745628", + "1.2258320451", + "1.2294713236", + "1.2332959051", + "1.2335154389", + "1.1968680745", + "1.2017443897", + "1.2227904298", + "1.2032426168", + "1.2105833639", + "1.1624947785", + "1.1549428728", + "1.1856554538", + "1.1818312068", + "1.194180299", + "1.1990379348", + "1.1936825805", + "1.1932460103", + "1.1842971391", + "1.1963135593", + "1.173962818", + "1.1899113366", + "1.1986240757", + "1.1943387938", + "1.2025363602", + "1.2177925817", + "1.2132619292", + "1.1543562252", + "1.1921067354", + "1.182608132", + "1.1447022033", + "1.4148775308", + "1.4475141886", + "1.4129907493", + "1.4216696028", + "1.395560059", + "1.2093502191", + "1.0626204472", + "1.0546530219", + "1.107988133", + "1.0712602183", + "1.0763007094", + "1.0740701113", + "1.0617236906", + "1.0666662917", + "1.0199160072", + "1.0752114833", + "1.069573732", + "1.1150591549", + "1.0931543331", + "1.0855090969", + "1.0728392229", + "0.9857280876", + "0.9896457037", + "1.0978004289", + "1.0803564326", + "1.0843037451", + "1.0791160941", + "1.0516999613", + "1.1407753263", + "1.0883448924", + "1.0883912673", + "1.1854401372", + "1.2159871", + "1.1713989137", + "1.1783912851", + "1.1511549403", + "1.1565427385", + "1.1557098606", + "1.147876545", + "1.0904971631", + "1.2391109154", + "1.2932758829", + "1.2602988062", + "1.2494972053", + "1.2568031199", + "1.1973982813", + "1.2099991122", + "1.2170567252", + "1.2122946929", + "1.2616577344", + "1.2676446066", + "1.2770434557", + "1.2891348359", + "1.2243108759", + "1.266099597", + "1.2642311807", + "1.1906456185", + "1.1887733475", + "1.2169691212", + "1.2100724903", + "1.2618912416", + "1.1655671304", + "1.110896472", + "1.1287102029", + "1.0914548071", + "1.1238545346", + "1.2070852954", + "1.2203276516", + "1.235243879", + "1.2504802862", + "1.1642488817", + "1.0966379308", + "1.1570206487", + "1.229724943", + "1.0755594378", + "1.1044180399", + "1.1105402885", + "1.1673296604", + "1.1206597785", + "1.1271734243", + "1.1319557703", + "1.1132044096", + "1.1394509565", + "1.2067286585", + "1.2132828227", + "1.2410683377", + "1.2540713279", + "1.2506916279", + "1.1293285475", + "1.1563728546", + "1.1196618991", + "1.1250791176", + "1.1770637295", + "1.2093769508", + "1.2013123292", + "1.2097277926", + "1.1968224499", + "1.1839293639", + "1.1884758519", + "1.2421011438", + "1.2974869652", + "1.3942442864", + "1.3073687043", + "1.3067383994", + "1.3345641511", + "1.2719517914", + "1.3387979107", + "1.3338439842", + "1.2988188835", + "1.3080823492", + "1.2033684681", + "1.4949255334", + "1.4210802247", + "1.4302692451", + "1.3577788728", + "1.3700697144", + "1.3596846149", + "1.461888224", + "1.3891198618", + "1.4273074767", + "1.4213903509", + "1.3992748329", + "1.3285020464", + "1.3312468899", + "1.37590544", + "1.3696661984", + "1.374254999", + "1.3396534112", + "1.3312343867", + "1.3231975453", + "1.3828466668", + "1.3416753109", + "1.3493440133", + "1.3198648421", + "1.2726117618", + "1.3761744141", + "1.3142585252", + "1.3073918805", + "1.3276201124", + "1.40376437", + "1.4160359286", + "1.4246247918", + "1.4197370232", + "1.4135322968", + "1.403372502", + "1.4023906132", + "1.3957375313", + "1.5139324088", + "1.4948156839", + "1.3687508038", + "1.4180361468", + "1.4179634649", + "1.4116042365", + "1.414117007", + "1.4801995071", + "1.4747494847", + "1.4296279453", + "1.4155926017", + "1.4129396996", + "1.4014436156", + "1.4201770093", + "1.3886533851", + "1.3796092348", + "1.3754476749", + "1.3910083688", + "1.3864786797", + "1.377376732", + "1.3839466464", + "1.3986219602", + "1.4133725327", + "1.4223068995", + "1.4487715872", + "1.4003021947", + "1.4243139624", + "1.435238986", + "1.3789273406", + "1.4332470797", + "1.4081792274", + "1.3841166383", + "1.3836178675", + "1.3913111846", + "1.3852760749", + "1.3584081518", + "1.3663532099", + "1.3694954193", + "1.3407757038" + ] + }, + "essential_compounds": [ + "3dhcdchol", + "3dhchol", + "C02528", + "ac", + "acald", + "adocbl", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_L", + "arbt", + "arg_L", + "asn_L", + "asp_L", + "btn", + "but", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "cholate", + "cl", + "co2", + "cobalt2", + "cro4", + "cu2", + "cys_L", + "dgchol", + "drib", + "etoh", + "fe2", + "fe3", + "for", + "fru", + "galt", + "gchola", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "h2o", + "h2s", + "h", + "hg2", + "his_L", + "hxan", + "icdchol", + "ile_L", + "isochol", + "k", + "lac_D", + "leu_L", + "lys_L", + "malt", + "man", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "na1", + "nac", + "nh4", + "no3", + "o2", + "pb", + "phe_L", + "pi", + "pnto_R", + "pppn", + "pro_L", + "ptrc", + "pydx", + "rib_D", + "ribflv", + "salcn", + "sbt_D", + "ser_L", + "so4", + "spmd", + "taur", + "tchola", + "tdchola", + "thr_L", + "tre", + "tyr_L", + "ura", + "urea", + "val_L", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_433.json b/agents/agora/agent_433.json new file mode 100644 index 0000000000000000000000000000000000000000..7c7a4f3dc33c9587e57fea5fe6b03b82d516479e --- /dev/null +++ b/agents/agora/agent_433.json @@ -0,0 +1,1007 @@ +{ + "id": 433, + "name": "Geobacillus_vulcani_PSS1", + "N_R": 1431, + "taxonomy": { + "k": 433, + "tax_distance": [ + "2.5266551165", + "2.1087772492", + "2.1020780201", + "2.3286607272", + "2.0100606533", + "2.0551893402", + "2.0364840424", + "2.0335414481", + "2.0975230464", + "2.0158789545", + "2.0329436579", + "2.1410659717", + "2.11408375", + "2.3420977079", + "2.390454525", + "2.4207870356", + "2.3011366377", + "2.3100607545", + "2.3455352301", + "1.8785195461", + "1.8138485694", + "1.5633273107", + "1.4966768783", + "1.3751972016", + "1.2010179228", + "1.1952067147", + "1.1918521433", + "1.1942131977", + "1.1784469077", + "1.1697611448", + "1.1722120509", + "1.273797987", + "1.2833357898", + "1.2797018798", + "1.2953979484", + "1.2638963684", + "1.2866423125", + "1.304948224", + "1.285916261", + "1.57885692", + "1.3236985413", + "1.2423374853", + "1.2491027915", + "1.2517103716", + "1.2484786296", + "1.2514520113", + "1.2465534064", + "1.2469384417", + "1.2411235309", + "1.2331623413", + "1.1747401633", + "1.1802525633", + "1.17451173", + "1.1466654594", + "1.1531872035", + "1.1822892007", + "1.1562123139", + "1.1541962863", + "1.1749506919", + "1.1726107972", + "1.1558689697", + "1.1812197413", + "1.1832945311", + "1.1819636379", + "1.1963548554", + "1.1980770173", + "1.1980770173", + "1.2047226", + "1.2047226", + "1.2047226", + "1.2047226", + "1.2047226", + "1.2047226", + "1.2047226", + "1.2047226", + "1.2006432373", + "1.2009889745", + "1.1945572669", + "1.2050497415", + "1.2041444996", + "1.20024633", + "1.1985036564", + "1.1998222262", + "1.1963203457", + "1.1912425974", + "1.194587723", + "1.2000334898", + "1.1954952981", + "1.180495342", + "1.1888664569", + "1.1835910717", + "1.1997390127", + "1.1950417235", + "1.1991752928", + "1.1771355822", + "1.1717353984", + "1.1858017535", + "1.1964621625", + "1.2132592055", + "1.1956689153", + "1.1856737968", + "1.1843559792", + "1.1651055993", + "1.1779840883", + "1.2368565333", + "1.2317046216", + "1.2986008789", + "1.2647616229", + "1.2019529821", + "1.2056792389", + "1.208412706", + "1.2013086245", + "1.2013086245", + "1.1826847223", + "1.1855888686", + "1.1774883519", + "1.2130140506", + "1.1497915011", + "1.1277005877", + "1.145564944", + "1.1322939487", + "1.1327195411", + "1.2509712547", + "1.2581617055", + "1.2796027184", + "1.0841990027", + "1.253947956", + "1.2606231901", + "1.2452600978", + "1.264894103", + "1.254081189", + "1.2591476753", + "1.2506513977", + "1.2437012926", + "1.2345715955", + "1.2352297159", + "1.2541436391", + "1.2272621952", + "1.2092979847", + "1.3031859256", + "1.3045597993", + "1.273871387", + "1.3314510776", + "1.2690296651", + "1.2745236079", + "1.2715625828", + "1.2962695679", + "1.2854471191", + "1.1936040471", + "1.1646939576", + "1.1258828976", + "1.1037816044", + "1.0951397981", + "1.090019607", + "1.1268912327", + "1.1293863586", + "1.1011982897", + "1.0895603358", + "1.0931468448", + "1.1620999556", + "1.1688083377", + "1.1384373911", + "1.2623554643", + "1.2568405689", + "1.2591816201", + "1.2169046939", + "1.2130507144", + "1.2509572881", + "1.2427804738", + "1.2115384513", + "1.21309781", + "1.2311178037", + "1.187813009", + "1.17697688", + "1.1781374325", + "1.2116237739", + "1.1998002212", + "1.181173364", + "1.2001619863", + "1.1814939876", + "1.1953089298", + "1.1895263588", + "1.1884579768", + "1.2090164285", + "1.2048038811", + "1.1876848357", + "1.2219132097", + "1.206678968", + "1.211791277", + "1.2111845915", + "1.1755829611", + "1.1715627529", + "1.1560954013", + "1.1744419065", + "1.1713755317", + "1.1456839379", + "1.12867119", + "1.1233635391", + "1.1281053237", + "1.127246713", + "1.1600126729", + "1.1590320111", + "1.1830718087", + "1.1609627817", + "1.1214547897", + "1.1246192005", + "1.1496810925", + "1.1459722084", + "1.1217215917", + "1.1142642418", + "1.1166175011", + "1.125795036", + "1.0515609391", + "1.0941640399", + "1.0784602692", + "1.072298506", + "1.0660182612", + "1.0539156436", + "1.057085983", + "1.0992580724", + "1.5336499036", + "1.6184281027", + "1.5309635276", + "1.5161458155", + "1.4944731827", + "1.0481508416", + "1.0669552476", + "1.1168881127", + "1.0785273607", + "1.0937645637", + "1.2073017013", + "1.1610723084", + "1.1827239826", + "1.1413906365", + "1.054728948", + "1.0671112909", + "1.0736023621", + "1.1340288989", + "1.1252293663", + "1.1233106353", + "1.1493129164", + "1.1466204808", + "1.1378524252", + "1.1693730488", + "1.1774565133", + "1.1616452401", + "1.1350269903", + "1.1296814172", + "1.1350920931", + "1.1237989519", + "1.0687680571", + "1.073852879", + "1.0730976555", + "1.11990924", + "1.0753389606", + "1.0577907622", + "1.1352155684", + "1.0884829286", + "1.0635654661", + "1.0766009573", + "1.0472164437", + "1.0124300855", + "1.0965181213", + "1.0988719077", + "1.1036491174", + "1.1089947154", + "1.0746936896", + "1.1353494389", + "1.1421855543", + "1.1386965518", + "1.1513616172", + "1.1374455744", + "1.1172296682", + "1.1086288995", + "1.1552807677", + "1.1745590404", + "1.2252380603", + "1.0681604441", + "1.03733315", + "1.1303388639", + "1.129322164", + "1.1165430883", + "1.0734678012", + "1.1382911154", + "1.1292343632", + "1.1318866255", + "1.1630259308", + "1.1046847976", + "1.0899510948", + "1.0715759665", + "1.0998916052", + "1.0713986799", + "1.1265445972", + "1.1575379972", + "1.180170845", + "1.136854668", + "1.1082008795", + "1.1284477762", + "1.1082013878", + "1.0945874129", + "1.059332342", + "1.0942819015", + "1.0253714256", + "1.0426367966", + "1.1254455076", + "1.1138108468", + "1.1109124205", + "1.1210667277", + "1.1294296132", + "1.118752252", + "1.1306928196", + "1.1191593621", + "1.1166978555", + "1.0851087239", + "1.0911036297", + "1.0973616269", + "1.0845160815", + "1.1180547184", + "1.0502839301", + "1.1087818704", + "1.1059266378", + "1.0961671703", + "1.0953922939", + "1.1215344187", + "1.0981431819", + "1.0678370439", + "0.9825089445", + "0.9943134893", + "0.9953307652", + "0.939353988", + "0.9514809085", + "0.9481925065", + "0.9295183074", + "0.9382002591", + "0.9341594722", + "0.9241963224", + "0.949997349", + "0.9466860123", + "0.910056734", + "0.9285951667", + "0.8863539077", + "0.8890328465", + "0.9030232618", + "0.9045243715", + "0.8911945264", + "0.8806731323", + "0.9074275646", + "0.8933506175", + "0.8533443204", + "0.860707856", + "1.0302754195", + "0.8506089107", + "0.855153265", + "0.8587570389", + "0.8547044307", + "0.821822404", + "0.8516310788", + "0.871690321", + "0.8736830447", + "0.8717654453", + "0.8550823563", + "0.8539224267", + "0.8196860169", + "0.8219618184", + "0.9478452119", + "0.959039568", + "0.8453263437", + "0.8509837555", + "0.8410550639", + "0.8051868833", + "0.8307952802", + "0.8215301657", + "0.8136654179", + "0.8128114875", + "0.8203360434", + "0.8143285696", + "0.8333974885", + "0.8273211717", + "0.8390435225", + "0.8338107467", + "0.8205944975", + "0.8086607958", + "0.8183215217", + "0.8141680374", + "0.82007034", + "0.8121219952", + "0.7875614595", + "0.796974426", + "0.7908060106", + "0.8188371982", + "0.8165322506", + "0.6109587325", + "0.6247898553", + "0.637481966", + "0.6684009387", + "0.6720248376", + "0.6608116944", + "0.6768620923", + "0.6574120045", + "0.6538353034", + "0.6707523623", + "0.6605533541", + "0.6651121259", + "0.6731651476", + "0.6589503111", + "0.6507751045", + "0.710866084", + "0.6873283107", + "0.6876453367", + "0.6882887506", + "0.6827961559", + "0.6729015318", + "0.7330786082", + "0.7039874753", + "0.6262302413", + "0.6450452607", + "0.6648110189", + "0.6409207092", + "0.6226240839", + "0.604094198", + "0.6203993895", + "0.6277557897", + "0.6101539667", + "0.6656620325", + "0.6718332896", + "0.6755509471", + "0.7108130387", + "0.6648246567", + "0.6905004644", + "0.5754642014", + "0.5583457633", + "0.0513753346", + "0.0", + "0.1799744701", + "0.2485884747", + "0.389280009", + "0.516454925", + "0.5806963739", + "0.6044355033", + "0.5918600421", + "0.5696572224", + "0.7508482281", + "0.7571475637", + "0.7371492583", + "0.7496777042", + "0.7482037065", + "0.7166054967", + "0.7264046362", + "0.7753331862", + "0.8107573493", + "0.78557017", + "0.7662583678", + "0.7151122926", + "0.7269108933", + "0.7266043431", + "0.7574202385", + "0.7577779343", + "0.6904954132", + "0.8282680196", + "0.8328516608", + "0.8425952368", + "0.8223567809", + "0.7840521007", + "0.8534455975", + "0.834409274", + "0.8392709622", + "0.7760591158", + "0.8077712292", + "0.8164072879", + "0.8280650421", + "0.8105005026", + "0.797136187", + "0.7615032054", + "0.760588833", + "0.7670555228", + "0.8428938055", + "0.8230103178", + "0.8983932162", + "0.8524036631", + "0.8067460864", + "0.8129511233", + "0.8178914127", + "0.812582754", + "0.806781153", + "0.834221422", + "0.8163649582", + "0.8083154646", + "0.7993024976", + "0.8212399746", + "0.8157381298", + "0.8173720218", + "0.7813219307", + "0.7834784021", + "0.7566041892", + "0.8398678797", + "0.8156061034", + "0.8009642898", + "0.7812329439", + "0.9169566346", + "0.9202164429", + "0.9481234242", + "0.9027592452", + "0.9068625612", + "0.9209110407", + "0.9346275065", + "0.9582667277", + "0.899462036", + "0.8774758681", + "0.9060821006", + "0.874332756", + "0.8776465813", + "0.8906138281", + "0.8709684632", + "0.8782308074", + "0.8638659545", + "0.8597775256", + "0.9415211583", + "0.9337126239", + "0.8880318144", + "0.9087987771", + "0.9054795064", + "0.9586888659", + "0.8860872202", + "0.8702984433", + "0.8879309702", + "0.8887540859", + "0.8901839481", + "0.9156049181", + "0.9275295675", + "0.9859935877", + "0.9893799819", + "0.9724256594", + "0.9576577971", + "0.9384316642", + "0.9075657849", + "1.2688478467", + "1.2932883232", + "1.2571330447", + "1.2677836494", + "1.2450281149", + "1.231276494", + "1.3216248795", + "1.3504690646", + "1.3515869868", + "1.2758561222", + "1.2733882469", + "1.2734549625", + "1.2672450683", + "1.2853322769", + "1.2613494211", + "1.2372015906", + "1.1999984807", + "1.2081414783", + "1.1863228997", + "1.2070545492", + "1.1653389789", + "1.1798265118", + "1.181478938", + "1.187094779", + "1.1796019636", + "1.1791365645", + "1.1763974166", + "1.1666997895", + "1.1844070118", + "1.1645533762", + "1.1670005271", + "1.1627406927", + "1.1773991397", + "1.1964992418", + "1.1397971231", + "1.1621978973", + "1.1702355281", + "1.1693776185", + "1.1526342731", + "1.1418564336", + "1.1419875913", + "1.1466802389", + "1.1499970127", + "1.1827176247", + "1.2139197132", + "1.2088477353", + "1.1327894648", + "1.1336807498", + "1.1289324381", + "1.1349816882", + "1.0560133702", + "0.9529700531", + "0.9666025661", + "1.2058296678", + "1.4136802936", + "1.1673208567", + "1.2278361422", + "1.2292280912", + "1.2050914838", + "1.212769987", + "1.235490378", + "1.2252919101", + "1.2427010061", + "1.2438550675", + "1.2404177375", + "1.2400787791", + "1.2668632514", + "1.2368207337", + "1.2404600122", + "1.2442845937", + "1.2445041275", + "1.2078567631", + "1.2127330783", + "1.2337791184", + "1.2142313054", + "1.2215720525", + "1.1734834671", + "1.1659315614", + "1.1966441424", + "1.1928198954", + "1.2051689876", + "1.2100266234", + "1.2046712691", + "1.2042346989", + "1.1952858277", + "1.2073022479", + "1.1849515066", + "1.2009000252", + "1.2096127643", + "1.2053274824", + "1.2135250488", + "1.2287812703", + "1.2242506178", + "1.1653449138", + "1.203095424", + "1.1935968206", + "1.1556908919", + "1.4258662194", + "1.4585028772", + "1.4239794379", + "1.4326582914", + "1.4065487476", + "1.2203389077", + "1.0736091358", + "1.0656417105", + "1.1189768216", + "1.0822489069", + "1.087289398", + "1.0850587999", + "1.0727123792", + "1.0776549803", + "1.0309046958", + "1.0862001719", + "1.0805624206", + "1.1260478435", + "1.1041430217", + "1.0964977855", + "1.0838279115", + "0.9967167762", + "1.0006343923", + "1.1087891175", + "1.0913451212", + "1.0952924337", + "1.0901047827", + "1.0626886499", + "1.1517640149", + "1.099333581", + "1.0993799559", + "1.1964288258", + "1.2269757886", + "1.1823876023", + "1.1893799737", + "1.1621436289", + "1.1675314271", + "1.1666985492", + "1.1588652336", + "1.1014858517", + "1.250099604", + "1.3042645715", + "1.2712874948", + "1.2604858939", + "1.2677918085", + "1.2083869699", + "1.2209878008", + "1.2280454138", + "1.2232833815", + "1.272646423", + "1.2786332952", + "1.2880321443", + "1.3001235245", + "1.2352995645", + "1.2770882856", + "1.2752198693", + "1.2016343071", + "1.1997620361", + "1.2279578098", + "1.2210611789", + "1.2728799302", + "1.176555819", + "1.1218851606", + "1.1396988915", + "1.1024434957", + "1.1348432232", + "1.218073984", + "1.2313163402", + "1.2462325676", + "1.2614689748", + "1.1752375703", + "1.1076266194", + "1.1680093373", + "1.2407136316", + "1.0865481264", + "1.1154067285", + "1.1215289771", + "1.178318349", + "1.1316484671", + "1.1381621129", + "1.1429444589", + "1.1241930982", + "1.1504396451", + "1.2177173471", + "1.2242715113", + "1.2520570263", + "1.2650600165", + "1.2616803165", + "1.1403172361", + "1.1673615432", + "1.1306505877", + "1.1360678062", + "1.1880524181", + "1.2203656394", + "1.2123010178", + "1.2207164812", + "1.2078111385", + "1.1949180525", + "1.1994645405", + "1.2530898324", + "1.3084756538", + "1.405232975", + "1.3183573929", + "1.317727088", + "1.3455528397", + "1.28294048", + "1.3497865993", + "1.3448326728", + "1.3098075721", + "1.3190710378", + "1.2143571567", + "1.505914222", + "1.4320689133", + "1.4412579337", + "1.3687675614", + "1.381058403", + "1.3706733035", + "1.4728769126", + "1.4001085504", + "1.4382961653", + "1.4323790395", + "1.4102635215", + "1.339490735", + "1.3422355785", + "1.3868941286", + "1.380654887", + "1.3852436876", + "1.3506420998", + "1.3422230753", + "1.3341862339", + "1.3938353554", + "1.3526639995", + "1.3603327019", + "1.3308535307", + "1.2836004504", + "1.3871631027", + "1.3252472138", + "1.3183805691", + "1.338608801", + "1.4147530586", + "1.4270246172", + "1.4356134804", + "1.4307257118", + "1.4245209854", + "1.4143611906", + "1.4133793018", + "1.4067262199", + "1.5249210974", + "1.5058043725", + "1.3797394924", + "1.4290248354", + "1.4289521535", + "1.4225929251", + "1.4251056956", + "1.4911881957", + "1.4857381733", + "1.4406166339", + "1.4265812903", + "1.4239283882", + "1.4124323042", + "1.4311656979", + "1.3996420737", + "1.3905979234", + "1.3864363635", + "1.4019970574", + "1.3974673683", + "1.3883654206", + "1.394935335", + "1.4096106488", + "1.4243612213", + "1.4332955881", + "1.4597602758", + "1.4112908833", + "1.435302651", + "1.4462276746", + "1.3899160292", + "1.4442357683", + "1.419167916", + "1.3951053269", + "1.3946065561", + "1.4022998732", + "1.3962647635", + "1.3693968404", + "1.3773418985", + "1.3804841079", + "1.3517643924" + ] + }, + "essential_compounds": [ + "15dap", + "2hyoxplac", + "34dhphe", + "3mop", + "4abut", + "4abz", + "4hbz", + "5htrp", + "ac", + "acac", + "acald", + "acgam", + "adn", + "adocbl", + "akg", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_D", + "arab_L", + "arbt", + "arg_L", + "asn_L", + "asp_L", + "bhb", + "but", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "ctbt", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dgsn", + "din", + "dopa", + "drib", + "duri", + "etha", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "fuc1p_L", + "fum", + "g6p", + "gal", + "galct_D", + "galctn_D", + "galt", + "galur", + "gam", + "gbbtn", + "gcald", + "glc_D", + "glcn", + "glcr", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glyclt", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gsn", + "gthrd", + "gua", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hg2", + "his_L", + "hista", + "hxan", + "ile_L", + "indole", + "ins", + "k", + "lac_D", + "lac_L", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man6p", + "man", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppa", + "ppi", + "pppn", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "rib_D", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "so4", + "spmd", + "srtn", + "succ", + "sucr", + "taur", + "thm", + "thr_L", + "thymd", + "tre", + "trp_L", + "trypta", + "tsul", + "ttdca", + "tym", + "tyr_L", + "ura", + "uri", + "val_L", + "xan", + "xtsn", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_434.json b/agents/agora/agent_434.json new file mode 100644 index 0000000000000000000000000000000000000000..4341c1bd4fe34cbad550134daa63213bd83b0fdc --- /dev/null +++ b/agents/agora/agent_434.json @@ -0,0 +1,1017 @@ +{ + "id": 434, + "name": "Gordonia_rubripertincta_NBRC_101908", + "N_R": 996, + "taxonomy": { + "k": 434, + "tax_distance": [ + "2.460726407", + "2.0428485397", + "2.0361493106", + "2.2627320177", + "1.9441319438", + "1.9892606307", + "1.9705553329", + "1.9676127386", + "2.0315943369", + "1.949950245", + "1.9670149484", + "2.0751372622", + "2.0481550405", + "2.2761689984", + "2.3245258155", + "2.3548583261", + "2.2352079282", + "2.244132045", + "2.2796065206", + "1.8125908366", + "1.7479198599", + "1.4973986012", + "1.4307481688", + "1.3092684921", + "1.1350892133", + "1.1292780052", + "1.1259234338", + "1.1282844882", + "1.1125181982", + "1.1038324353", + "1.1062833414", + "1.2078692775", + "1.2174070803", + "1.2137731703", + "1.2294692389", + "1.1979676589", + "1.220713603", + "1.2390195145", + "1.2199875515", + "1.5129282105", + "1.2577698318", + "1.1764087758", + "1.183174082", + "1.1857816621", + "1.1825499201", + "1.1855233018", + "1.1806246969", + "1.1810097322", + "1.1751948214", + "1.1672336318", + "1.1088114538", + "1.1143238538", + "1.1085830205", + "1.0807367499", + "1.087258494", + "1.1163604912", + "1.0902836044", + "1.0882675768", + "1.1090219824", + "1.1066820877", + "1.0899402602", + "1.1152910318", + "1.1173658216", + "1.1160349284", + "1.1304261459", + "1.1321483078", + "1.1321483078", + "1.1387938905", + "1.1387938905", + "1.1387938905", + "1.1387938905", + "1.1387938905", + "1.1387938905", + "1.1387938905", + "1.1387938905", + "1.1347145278", + "1.135060265", + "1.1286285574", + "1.139121032", + "1.1382157901", + "1.1343176205", + "1.1325749469", + "1.1338935167", + "1.1303916362", + "1.1253138879", + "1.1286590135", + "1.1341047803", + "1.1295665886", + "1.1145666325", + "1.1229377474", + "1.1176623622", + "1.1338103032", + "1.129113014", + "1.1332465833", + "1.1112068727", + "1.1058066889", + "1.119873044", + "1.130533453", + "1.147330496", + "1.1297402058", + "1.1197450873", + "1.1184272697", + "1.0991768898", + "1.1120553788", + "1.1709278238", + "1.1657759121", + "1.2326721694", + "1.1988329134", + "1.1360242726", + "1.1397505294", + "1.1424839965", + "1.135379915", + "1.135379915", + "1.1167560128", + "1.1196601591", + "1.1115596424", + "1.1470853411", + "1.0838627916", + "1.0617718782", + "1.0796362345", + "1.0663652392", + "1.0667908316", + "1.1850425452", + "1.192232996", + "1.2136740089", + "1.0182702932", + "1.1880192465", + "1.1946944806", + "1.1793313883", + "1.1989653935", + "1.1881524795", + "1.1932189658", + "1.1847226882", + "1.1777725831", + "1.168642886", + "1.1693010064", + "1.1882149296", + "1.1613334857", + "1.1433692752", + "1.2372572161", + "1.2386310898", + "1.2079426775", + "1.2655223681", + "1.2031009556", + "1.2085948984", + "1.2056338733", + "1.2303408584", + "1.2195184096", + "1.1276753376", + "1.0987652481", + "1.0599541881", + "1.0378528949", + "1.0292110886", + "1.0240908975", + "1.0609625232", + "1.0634576491", + "1.0352695802", + "1.0236316263", + "1.0272181353", + "1.0961712461", + "1.1028796282", + "1.0725086816", + "1.1964267548", + "1.1909118594", + "1.1932529106", + "1.1509759844", + "1.1471220049", + "1.1850285786", + "1.1768517643", + "1.1456097418", + "1.1471691005", + "1.1651890942", + "1.1218842995", + "1.1110481705", + "1.112208723", + "1.1456950644", + "1.1338715117", + "1.1152446545", + "1.1342332768", + "1.1155652781", + "1.1293802203", + "1.1235976493", + "1.1225292673", + "1.143087719", + "1.1388751716", + "1.1217561262", + "1.1559845002", + "1.1407502585", + "1.1458625675", + "1.145255882", + "1.1096542516", + "1.1056340434", + "1.0901666918", + "1.108513197", + "1.1054468222", + "1.0797552284", + "1.0627424805", + "1.0574348296", + "1.0621766142", + "1.0613180035", + "1.0940839634", + "1.0931033016", + "1.1171430992", + "1.0950340722", + "1.0555260802", + "1.058690491", + "1.083752383", + "1.0800434989", + "1.0557928822", + "1.0483355323", + "1.0506887916", + "1.0598663265", + "0.9856322296", + "1.0282353304", + "1.0125315597", + "1.0063697965", + "1.0000895517", + "0.9879869341", + "0.9911572735", + "1.0333293629", + "1.4677211941", + "1.5524993932", + "1.4650348181", + "1.450217106", + "1.4285444732", + "0.9822221321", + "1.0010265381", + "1.0509594032", + "1.0125986512", + "1.0278358542", + "1.1413729918", + "1.0951435989", + "1.1167952731", + "1.075461927", + "0.9888002385", + "1.0011825814", + "1.0076736526", + "1.0681001894", + "1.0593006568", + "1.0573819258", + "1.0833842069", + "1.0806917713", + "1.0719237157", + "1.1034443393", + "1.1115278038", + "1.0957165306", + "1.0690982808", + "1.0637527077", + "1.0691633836", + "1.0578702424", + "1.0028393476", + "1.0079241695", + "1.007168946", + "1.0539805305", + "1.0094102511", + "0.9918620527", + "1.0692868589", + "1.0225542191", + "0.9976367566", + "1.0106722478", + "0.9812877342", + "0.946501376", + "1.0305894118", + "1.0329431982", + "1.0377204079", + "1.0430660059", + "1.0087649801", + "1.0694207294", + "1.0762568448", + "1.0727678423", + "1.0854329077", + "1.0715168649", + "1.0513009587", + "1.04270019", + "1.0893520582", + "1.1086303309", + "1.1593093508", + "1.0022317346", + "0.9714044405", + "1.0644101544", + "1.0633934545", + "1.0506143788", + "1.0075390917", + "1.0723624059", + "1.0633056537", + "1.065957916", + "1.0970972213", + "1.0387560881", + "1.0240223853", + "1.005647257", + "1.0339628957", + "1.0054699704", + "1.0606158877", + "1.0916092877", + "1.1142421355", + "1.0709259585", + "1.04227217", + "1.0625190667", + "1.0422726783", + "1.0286587034", + "0.9934036325", + "1.028353192", + "0.9594427161", + "0.9767080871", + "1.0595167981", + "1.0478821373", + "1.044983711", + "1.0551380182", + "1.0635009037", + "1.0528235425", + "1.0647641101", + "1.0532306526", + "1.050769146", + "1.0191800144", + "1.0251749202", + "1.0314329174", + "1.018587372", + "1.0521260089", + "0.9843552206", + "1.0428531609", + "1.0399979283", + "1.0302384608", + "1.0294635844", + "1.0556057092", + "1.0322144724", + "1.0019083344", + "0.916580235", + "0.9283847798", + "0.9294020557", + "0.8734252785", + "0.885552199", + "0.882263797", + "0.8635895979", + "0.8722715496", + "0.8682307627", + "0.8582676129", + "0.8840686395", + "0.8807573028", + "0.8441280245", + "0.8626664572", + "0.8204251982", + "0.823104137", + "0.8370945523", + "0.838595662", + "0.8252658169", + "0.8147444228", + "0.8414988551", + "0.827421908", + "0.7874156109", + "0.7947791465", + "0.96434671", + "0.7846802012", + "0.7892245555", + "0.7928283294", + "0.7887757212", + "0.7558936945", + "0.7857023693", + "0.8057616115", + "0.8077543352", + "0.8058367358", + "0.7891536468", + "0.7879937172", + "0.7537573074", + "0.7560331089", + "0.8819165024", + "0.8931108585", + "0.7793976342", + "0.785055046", + "0.7751263544", + "0.7392581738", + "0.7648665707", + "0.7556014562", + "0.7477367084", + "0.746882778", + "0.7544073339", + "0.7483998601", + "0.767468779", + "0.7613924622", + "0.773114813", + "0.7678820372", + "0.754665788", + "0.7427320863", + "0.7523928122", + "0.7482393279", + "0.7541416305", + "0.7461932857", + "0.72163275", + "0.7310457165", + "0.7248773011", + "0.7529084887", + "0.7506035411", + "0.545030023", + "0.5588611458", + "0.5715532565", + "0.6024722292", + "0.6060961281", + "0.5948829849", + "0.6109333828", + "0.591483295", + "0.5879065939", + "0.6048236528", + "0.5946246446", + "0.5991834164", + "0.6072364381", + "0.5930216016", + "0.584846395", + "0.6449373745", + "0.6213996012", + "0.6217166272", + "0.6223600411", + "0.6168674464", + "0.6069728223", + "0.6671498987", + "0.6380587658", + "0.5603015318", + "0.5791165512", + "0.5988823094", + "0.5749919997", + "0.5566953744", + "0.5381654885", + "0.55447068", + "0.5618270802", + "0.5442252572", + "0.599733323", + "0.6059045801", + "0.6096222376", + "0.6448843292", + "0.5988959472", + "0.6245717549", + "0.5095354919", + "0.4924170538", + "0.1689857815", + "0.1799744701", + "0.0", + "0.1826597652", + "0.3233512995", + "0.4505262155", + "0.5147676644", + "0.5385067938", + "0.5259313326", + "0.5037285129", + "0.6849195186", + "0.6912188542", + "0.6712205488", + "0.6837489947", + "0.682274997", + "0.6506767872", + "0.6604759267", + "0.7094044767", + "0.7448286398", + "0.7196414605", + "0.7003296583", + "0.6491835831", + "0.6609821838", + "0.6606756336", + "0.691491529", + "0.6918492248", + "0.6245667037", + "0.7623393101", + "0.7669229513", + "0.7766665273", + "0.7564280714", + "0.7181233912", + "0.787516888", + "0.7684805645", + "0.7733422527", + "0.7101304063", + "0.7418425197", + "0.7504785784", + "0.7621363326", + "0.7445717931", + "0.7312074775", + "0.6955744959", + "0.6946601235", + "0.7011268133", + "0.776965096", + "0.7570816083", + "0.8324645067", + "0.7864749536", + "0.7408173769", + "0.7470224138", + "0.7519627032", + "0.7466540445", + "0.7408524435", + "0.7682927125", + "0.7504362487", + "0.7423867551", + "0.7333737881", + "0.7553112651", + "0.7498094203", + "0.7514433123", + "0.7153932212", + "0.7175496926", + "0.6906754797", + "0.7739391702", + "0.7496773939", + "0.7350355803", + "0.7153042344", + "0.8510279251", + "0.8542877334", + "0.8821947147", + "0.8368305357", + "0.8409338517", + "0.8549823312", + "0.868698797", + "0.8923380182", + "0.8335333265", + "0.8115471586", + "0.8401533911", + "0.8084040465", + "0.8117178718", + "0.8246851186", + "0.8050397537", + "0.8123020979", + "0.797937245", + "0.7938488161", + "0.8755924488", + "0.8677839144", + "0.8221031049", + "0.8428700676", + "0.8395507969", + "0.8927601564", + "0.8201585107", + "0.8043697338", + "0.8220022607", + "0.8228253764", + "0.8242552386", + "0.8496762086", + "0.861600858", + "0.9200648782", + "0.9234512724", + "0.9064969499", + "0.8917290876", + "0.8725029547", + "0.8416370754", + "1.2029191372", + "1.2273596137", + "1.1912043352", + "1.2018549399", + "1.1790994054", + "1.1653477845", + "1.25569617", + "1.2845403551", + "1.2856582773", + "1.2099274127", + "1.2074595374", + "1.207526253", + "1.2013163588", + "1.2194035674", + "1.1954207116", + "1.1712728811", + "1.1340697712", + "1.1422127688", + "1.1203941902", + "1.1411258397", + "1.0994102694", + "1.1138978023", + "1.1155502285", + "1.1211660695", + "1.1136732541", + "1.113207855", + "1.1104687071", + "1.10077108", + "1.1184783023", + "1.0986246667", + "1.1010718176", + "1.0968119832", + "1.1114704302", + "1.1305705323", + "1.0738684136", + "1.0962691878", + "1.1043068186", + "1.103448909", + "1.0867055636", + "1.0759277241", + "1.0760588818", + "1.0807515294", + "1.0840683032", + "1.1167889152", + "1.1479910037", + "1.1429190258", + "1.0668607553", + "1.0677520403", + "1.0630037286", + "1.0690529787", + "0.9900846607", + "0.8870413436", + "0.9006738566", + "1.1399009583", + "1.3477515841", + "1.1013921472", + "1.1619074327", + "1.1632993817", + "1.1391627743", + "1.1468412775", + "1.1695616685", + "1.1593632006", + "1.1767722966", + "1.177926358", + "1.174489028", + "1.1741500696", + "1.2009345419", + "1.1708920242", + "1.1745313027", + "1.1783558842", + "1.178575418", + "1.1419280536", + "1.1468043688", + "1.1678504089", + "1.1483025959", + "1.155643343", + "1.1075547576", + "1.1000028519", + "1.1307154329", + "1.1268911859", + "1.1392402781", + "1.1440979139", + "1.1387425596", + "1.1383059894", + "1.1293571182", + "1.1413735384", + "1.1190227971", + "1.1349713157", + "1.1436840548", + "1.1393987729", + "1.1475963393", + "1.1628525608", + "1.1583219083", + "1.0994162043", + "1.1371667145", + "1.1276681111", + "1.0897621824", + "1.3599375099", + "1.3925741677", + "1.3580507284", + "1.3667295819", + "1.3406200381", + "1.1544101982", + "1.0076804263", + "0.999713001", + "1.0530481121", + "1.0163201974", + "1.0213606885", + "1.0191300904", + "1.0067836697", + "1.0117262708", + "0.9649759863", + "1.0202714624", + "1.0146337111", + "1.060119134", + "1.0382143122", + "1.030569076", + "1.017899202", + "0.9307880667", + "0.9347056828", + "1.042860408", + "1.0254164117", + "1.0293637242", + "1.0241760732", + "0.9967599404", + "1.0858353054", + "1.0334048715", + "1.0334512464", + "1.1305001163", + "1.1610470791", + "1.1164588928", + "1.1234512642", + "1.0962149194", + "1.1016027176", + "1.1007698397", + "1.0929365241", + "1.0355571422", + "1.1841708945", + "1.238335862", + "1.2053587853", + "1.1945571844", + "1.201863099", + "1.1424582604", + "1.1550590913", + "1.1621167043", + "1.157354672", + "1.2067177135", + "1.2127045857", + "1.2221034348", + "1.234194815", + "1.169370855", + "1.2111595761", + "1.2092911598", + "1.1357055976", + "1.1338333266", + "1.1620291003", + "1.1551324694", + "1.2069512207", + "1.1106271095", + "1.0559564511", + "1.073770182", + "1.0365147862", + "1.0689145137", + "1.1521452745", + "1.1653876307", + "1.1803038581", + "1.1955402653", + "1.1093088608", + "1.0416979099", + "1.1020806278", + "1.1747849221", + "1.0206194169", + "1.049478019", + "1.0556002676", + "1.1123896395", + "1.0657197576", + "1.0722334034", + "1.0770157494", + "1.0582643887", + "1.0845109356", + "1.1517886376", + "1.1583428018", + "1.1861283168", + "1.199131307", + "1.195751607", + "1.0743885266", + "1.1014328337", + "1.0647218782", + "1.0701390967", + "1.1221237086", + "1.1544369299", + "1.1463723083", + "1.1547877717", + "1.141882429", + "1.128989343", + "1.133535831", + "1.1871611229", + "1.2425469443", + "1.3393042655", + "1.2524286834", + "1.2517983785", + "1.2796241302", + "1.2170117705", + "1.2838578898", + "1.2789039633", + "1.2438788626", + "1.2531423283", + "1.1484284472", + "1.4399855125", + "1.3661402038", + "1.3753292242", + "1.3028388519", + "1.3151296935", + "1.304744594", + "1.4069482031", + "1.3341798409", + "1.3723674558", + "1.36645033", + "1.344334812", + "1.2735620255", + "1.276306869", + "1.3209654191", + "1.3147261775", + "1.3193149781", + "1.2847133903", + "1.2762943658", + "1.2682575244", + "1.3279066459", + "1.28673529", + "1.2944039924", + "1.2649248212", + "1.2176717409", + "1.3212343932", + "1.2593185043", + "1.2524518596", + "1.2726800915", + "1.3488243491", + "1.3610959077", + "1.3696847709", + "1.3647970023", + "1.3585922759", + "1.3484324811", + "1.3474505923", + "1.3407975104", + "1.4589923879", + "1.439875663", + "1.3138107829", + "1.3630961259", + "1.363023444", + "1.3566642156", + "1.3591769861", + "1.4252594862", + "1.4198094638", + "1.3746879244", + "1.3606525808", + "1.3579996787", + "1.3465035947", + "1.3652369884", + "1.3337133642", + "1.3246692139", + "1.320507654", + "1.3360683479", + "1.3315386588", + "1.3224367111", + "1.3290066255", + "1.3436819393", + "1.3584325118", + "1.3673668786", + "1.3938315663", + "1.3453621738", + "1.3693739415", + "1.3802989651", + "1.3239873197", + "1.3783070588", + "1.3532392065", + "1.3291766174", + "1.3286778466", + "1.3363711637", + "1.330336054", + "1.3034681309", + "1.311413189", + "1.3145553984", + "1.2858356829" + ] + }, + "essential_compounds": [ + "15dap", + "26dap_M", + "2hyoxplac", + "34dhphe", + "3mop", + "4abut", + "4abz", + "4hbz", + "5htrp", + "7dhcdchol", + "7ocholate", + "C02528", + "ac", + "acac", + "acald", + "acgam", + "adn", + "adocbl", + "akg", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_D", + "arab_L", + "arbt", + "arg_L", + "asn_L", + "asp_L", + "bhb", + "but", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cholate", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "ctbt", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dgsn", + "din", + "dms", + "dmso", + "dopa", + "drib", + "duri", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "fuc1p_L", + "fum", + "g6p", + "gal", + "galct_D", + "galctn_D", + "galt", + "galur", + "gam", + "gbbtn", + "gcald", + "glc_D", + "glcn", + "glcr", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glyclt", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gsn", + "gthrd", + "gua", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hg2", + "his_L", + "hista", + "hxan", + "ile_L", + "indole", + "ins", + "k", + "lac_D", + "lac_L", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man6p", + "man", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppa", + "ppi", + "pppn", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "rib_D", + "salcn", + "sbt_D", + "sel", + "selni", + "ser_D", + "ser_L", + "so4", + "spmd", + "srtn", + "succ", + "sucr", + "taur", + "thm", + "thr_L", + "thymd", + "tma", + "tmao", + "tre", + "trp_L", + "trypta", + "tsul", + "ttdca", + "tym", + "tyr_L", + "ura", + "uri", + "val_L", + "xan", + "xtsn", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_435.json b/agents/agora/agent_435.json new file mode 100644 index 0000000000000000000000000000000000000000..ff99448c25a33643ebbf24e3767333ad26513278 --- /dev/null +++ b/agents/agora/agent_435.json @@ -0,0 +1,1025 @@ +{ + "id": 435, + "name": "Gordonia_terrae_C_6", + "N_R": 892, + "taxonomy": { + "k": 435, + "tax_distance": [ + "2.4620032834", + "2.0441254161", + "2.037426187", + "2.2640088941", + "1.9454088202", + "1.9905375071", + "1.9718322093", + "1.968889615", + "2.0328712133", + "1.9512271214", + "1.9682918248", + "2.0764141386", + "2.0494319169", + "2.2774458748", + "2.3258026919", + "2.3561352025", + "2.2364848046", + "2.2454089214", + "2.280883397", + "1.813867713", + "1.7491967363", + "1.4986754776", + "1.4320250452", + "1.3105453685", + "1.1363660897", + "1.1305548816", + "1.1272003102", + "1.1295613646", + "1.1137950746", + "1.1051093117", + "1.1075602178", + "1.2091461539", + "1.2186839567", + "1.2150500467", + "1.2307461153", + "1.1992445353", + "1.2219904794", + "1.2402963909", + "1.2212644279", + "1.5142050869", + "1.2590467082", + "1.1776856522", + "1.1844509584", + "1.1870585385", + "1.1838267965", + "1.1868001782", + "1.1819015733", + "1.1822866086", + "1.1764716978", + "1.1685105082", + "1.1100883302", + "1.1156007302", + "1.1098598969", + "1.0820136263", + "1.0885353704", + "1.1176373676", + "1.0915604808", + "1.0895444532", + "1.1102988588", + "1.1079589641", + "1.0912171366", + "1.1165679082", + "1.118642698", + "1.1173118048", + "1.1317030223", + "1.1334251842", + "1.1334251842", + "1.1400707669", + "1.1400707669", + "1.1400707669", + "1.1400707669", + "1.1400707669", + "1.1400707669", + "1.1400707669", + "1.1400707669", + "1.1359914042", + "1.1363371414", + "1.1299054338", + "1.1403979084", + "1.1394926665", + "1.1355944969", + "1.1338518233", + "1.1351703931", + "1.1316685126", + "1.1265907643", + "1.1299358899", + "1.1353816567", + "1.130843465", + "1.1158435089", + "1.1242146238", + "1.1189392386", + "1.1350871796", + "1.1303898904", + "1.1345234597", + "1.1124837491", + "1.1070835653", + "1.1211499204", + "1.1318103294", + "1.1486073724", + "1.1310170822", + "1.1210219637", + "1.1197041461", + "1.1004537662", + "1.1133322552", + "1.1722047002", + "1.1670527885", + "1.2339490458", + "1.2001097898", + "1.137301149", + "1.1410274058", + "1.1437608729", + "1.1366567914", + "1.1366567914", + "1.1180328892", + "1.1209370355", + "1.1128365188", + "1.1483622175", + "1.085139668", + "1.0630487546", + "1.0809131109", + "1.0676421156", + "1.068067708", + "1.1863194216", + "1.1935098724", + "1.2149508853", + "1.0195471696", + "1.1892961229", + "1.195971357", + "1.1806082647", + "1.2002422699", + "1.1894293559", + "1.1944958422", + "1.1859995646", + "1.1790494595", + "1.1699197624", + "1.1705778828", + "1.189491806", + "1.1626103621", + "1.1446461516", + "1.2385340925", + "1.2399079662", + "1.2092195539", + "1.2667992445", + "1.204377832", + "1.2098717748", + "1.2069107497", + "1.2316177348", + "1.220795286", + "1.128952214", + "1.1000421245", + "1.0612310645", + "1.0391297713", + "1.030487965", + "1.0253677739", + "1.0622393996", + "1.0647345255", + "1.0365464566", + "1.0249085027", + "1.0284950117", + "1.0974481225", + "1.1041565046", + "1.073785558", + "1.1977036312", + "1.1921887358", + "1.194529787", + "1.1522528608", + "1.1483988813", + "1.186305455", + "1.1781286407", + "1.1468866182", + "1.1484459769", + "1.1664659706", + "1.1231611759", + "1.1123250469", + "1.1134855994", + "1.1469719408", + "1.1351483881", + "1.1165215309", + "1.1355101532", + "1.1168421545", + "1.1306570967", + "1.1248745257", + "1.1238061437", + "1.1443645954", + "1.140152048", + "1.1230330026", + "1.1572613766", + "1.1420271349", + "1.1471394439", + "1.1465327584", + "1.110931128", + "1.1069109198", + "1.0914435682", + "1.1097900734", + "1.1067236986", + "1.0810321048", + "1.0640193569", + "1.058711706", + "1.0634534906", + "1.0625948799", + "1.0953608398", + "1.094380178", + "1.1184199756", + "1.0963109486", + "1.0568029566", + "1.0599673674", + "1.0850292594", + "1.0813203753", + "1.0570697586", + "1.0496124087", + "1.051965668", + "1.0611432029", + "0.986909106", + "1.0295122068", + "1.0138084361", + "1.0076466729", + "1.0013664281", + "0.9892638105", + "0.9924341499", + "1.0346062393", + "1.4689980705", + "1.5537762696", + "1.4663116945", + "1.4514939824", + "1.4298213496", + "0.9834990085", + "1.0023034145", + "1.0522362796", + "1.0138755276", + "1.0291127306", + "1.1426498682", + "1.0964204753", + "1.1180721495", + "1.0767388034", + "0.9900771149", + "1.0024594578", + "1.008950529", + "1.0693770658", + "1.0605775332", + "1.0586588022", + "1.0846610833", + "1.0819686477", + "1.0732005921", + "1.1047212157", + "1.1128046802", + "1.096993407", + "1.0703751572", + "1.0650295841", + "1.07044026", + "1.0591471188", + "1.004116224", + "1.0092010459", + "1.0084458224", + "1.0552574069", + "1.0106871275", + "0.9931389291", + "1.0705637353", + "1.0238310955", + "0.998913633", + "1.0119491242", + "0.9825646106", + "0.9477782524", + "1.0318662882", + "1.0342200746", + "1.0389972843", + "1.0443428823", + "1.0100418565", + "1.0706976058", + "1.0775337212", + "1.0740447187", + "1.0867097841", + "1.0727937413", + "1.0525778351", + "1.0439770664", + "1.0906289346", + "1.1099072073", + "1.1605862272", + "1.003508611", + "0.9726813169", + "1.0656870308", + "1.0646703309", + "1.0518912552", + "1.0088159681", + "1.0736392823", + "1.0645825301", + "1.0672347924", + "1.0983740977", + "1.0400329645", + "1.0252992617", + "1.0069241334", + "1.0352397721", + "1.0067468468", + "1.0618927641", + "1.0928861641", + "1.1155190119", + "1.0722028349", + "1.0435490464", + "1.0637959431", + "1.0435495547", + "1.0299355798", + "0.9946805089", + "1.0296300684", + "0.9607195925", + "0.9779849635", + "1.0607936745", + "1.0491590137", + "1.0462605874", + "1.0564148946", + "1.0647777801", + "1.0541004189", + "1.0660409865", + "1.054507529", + "1.0520460224", + "1.0204568908", + "1.0264517966", + "1.0327097938", + "1.0198642484", + "1.0534028853", + "0.985632097", + "1.0441300373", + "1.0412748047", + "1.0315153372", + "1.0307404608", + "1.0568825856", + "1.0334913488", + "1.0031852108", + "0.9178571114", + "0.9296616562", + "0.9306789321", + "0.8747021549", + "0.8868290754", + "0.8835406734", + "0.8648664743", + "0.873548426", + "0.8695076391", + "0.8595444893", + "0.8853455159", + "0.8820341792", + "0.8454049009", + "0.8639433336", + "0.8217020746", + "0.8243810134", + "0.8383714287", + "0.8398725384", + "0.8265426933", + "0.8160212992", + "0.8427757315", + "0.8286987844", + "0.7886924873", + "0.7960560229", + "0.9656235864", + "0.7859570776", + "0.7905014319", + "0.7941052058", + "0.7900525976", + "0.7571705709", + "0.7869792457", + "0.8070384879", + "0.8090312116", + "0.8071136122", + "0.7904305232", + "0.7892705936", + "0.7550341838", + "0.7573099853", + "0.8831933788", + "0.8943877349", + "0.7806745106", + "0.7863319224", + "0.7764032308", + "0.7405350502", + "0.7661434471", + "0.7568783326", + "0.7490135848", + "0.7481596544", + "0.7556842103", + "0.7496767365", + "0.7687456554", + "0.7626693386", + "0.7743916894", + "0.7691589136", + "0.7559426644", + "0.7440089627", + "0.7536696886", + "0.7495162043", + "0.7554185069", + "0.7474701621", + "0.7229096264", + "0.7323225929", + "0.7261541775", + "0.7541853651", + "0.7518804175", + "0.5463068994", + "0.5601380222", + "0.5728301329", + "0.6037491056", + "0.6073730045", + "0.5961598613", + "0.6122102592", + "0.5927601714", + "0.5891834703", + "0.6061005292", + "0.595901521", + "0.6004602928", + "0.6085133145", + "0.594298478", + "0.5861232714", + "0.6462142509", + "0.6226764776", + "0.6229935036", + "0.6236369175", + "0.6181443228", + "0.6082496987", + "0.6684267751", + "0.6393356422", + "0.5615784082", + "0.5803934276", + "0.6001591858", + "0.5762688761", + "0.5579722508", + "0.5394423649", + "0.5557475564", + "0.5631039566", + "0.5455021336", + "0.6010101994", + "0.6071814565", + "0.610899114", + "0.6461612056", + "0.6001728236", + "0.6258486313", + "0.5108123683", + "0.4936939302", + "0.2375997861", + "0.2485884747", + "0.1826597652", + "0.0", + "0.3246281759", + "0.4518030919", + "0.5160445408", + "0.5397836702", + "0.527208209", + "0.5050053893", + "0.686196395", + "0.6924957306", + "0.6724974252", + "0.6850258711", + "0.6835518734", + "0.6519536636", + "0.6617528031", + "0.7106813531", + "0.7461055162", + "0.7209183369", + "0.7016065347", + "0.6504604595", + "0.6622590602", + "0.66195251", + "0.6927684054", + "0.6931261012", + "0.6258435801", + "0.7636161865", + "0.7681998277", + "0.7779434037", + "0.7577049478", + "0.7194002676", + "0.7887937644", + "0.7697574409", + "0.7746191291", + "0.7114072827", + "0.7431193961", + "0.7517554548", + "0.763413209", + "0.7458486695", + "0.7324843539", + "0.6968513723", + "0.6959369999", + "0.7024036897", + "0.7782419724", + "0.7583584847", + "0.8337413831", + "0.78775183", + "0.7420942533", + "0.7482992902", + "0.7532395796", + "0.7479309209", + "0.7421293199", + "0.7695695889", + "0.7517131251", + "0.7436636315", + "0.7346506645", + "0.7565881415", + "0.7510862967", + "0.7527201887", + "0.7166700976", + "0.718826569", + "0.6919523561", + "0.7752160466", + "0.7509542703", + "0.7363124567", + "0.7165811108", + "0.8523048015", + "0.8555646098", + "0.8834715911", + "0.8381074121", + "0.8422107281", + "0.8562592076", + "0.8699756734", + "0.8936148946", + "0.8348102029", + "0.812824035", + "0.8414302675", + "0.8096809229", + "0.8129947482", + "0.825961995", + "0.8063166301", + "0.8135789743", + "0.7992141214", + "0.7951256925", + "0.8768693252", + "0.8690607908", + "0.8233799813", + "0.844146944", + "0.8408276733", + "0.8940370328", + "0.8214353871", + "0.8056466102", + "0.8232791371", + "0.8241022528", + "0.825532115", + "0.850953085", + "0.8628777344", + "0.9213417546", + "0.9247281488", + "0.9077738263", + "0.893005964", + "0.8737798311", + "0.8429139518", + "1.2041960136", + "1.2286364901", + "1.1924812116", + "1.2031318163", + "1.1803762818", + "1.1666246609", + "1.2569730464", + "1.2858172315", + "1.2869351537", + "1.2112042891", + "1.2087364138", + "1.2088031294", + "1.2025932352", + "1.2206804438", + "1.196697588", + "1.1725497575", + "1.1353466476", + "1.1434896452", + "1.1216710666", + "1.1424027161", + "1.1006871458", + "1.1151746787", + "1.1168271049", + "1.1224429459", + "1.1149501305", + "1.1144847314", + "1.1117455835", + "1.1020479564", + "1.1197551787", + "1.0999015431", + "1.102348694", + "1.0980888596", + "1.1127473066", + "1.1318474087", + "1.07514529", + "1.0975460642", + "1.105583695", + "1.1047257854", + "1.08798244", + "1.0772046005", + "1.0773357582", + "1.0820284058", + "1.0853451796", + "1.1180657916", + "1.1492678801", + "1.1441959022", + "1.0681376317", + "1.0690289167", + "1.064280605", + "1.0703298551", + "0.9913615371", + "0.88831822", + "0.901950733", + "1.1411778347", + "1.3490284605", + "1.1026690236", + "1.1631843091", + "1.1645762581", + "1.1404396507", + "1.1481181539", + "1.1708385449", + "1.160640077", + "1.178049173", + "1.1792032344", + "1.1757659044", + "1.175426946", + "1.2022114183", + "1.1721689006", + "1.1758081791", + "1.1796327606", + "1.1798522944", + "1.14320493", + "1.1480812452", + "1.1691272853", + "1.1495794723", + "1.1569202194", + "1.108831634", + "1.1012797283", + "1.1319923093", + "1.1281680623", + "1.1405171545", + "1.1453747903", + "1.140019436", + "1.1395828658", + "1.1306339946", + "1.1426504148", + "1.1202996735", + "1.1362481921", + "1.1449609312", + "1.1406756493", + "1.1488732157", + "1.1641294372", + "1.1595987847", + "1.1006930807", + "1.1384435909", + "1.1289449875", + "1.0910390588", + "1.3612143863", + "1.3938510441", + "1.3593276048", + "1.3680064583", + "1.3418969145", + "1.1556870746", + "1.0089573027", + "1.0009898774", + "1.0543249885", + "1.0175970738", + "1.0226375649", + "1.0204069668", + "1.0080605461", + "1.0130031472", + "0.9662528627", + "1.0215483388", + "1.0159105875", + "1.0613960104", + "1.0394911886", + "1.0318459524", + "1.0191760784", + "0.9320649431", + "0.9359825592", + "1.0441372844", + "1.0266932881", + "1.0306406006", + "1.0254529496", + "0.9980368168", + "1.0871121818", + "1.0346817479", + "1.0347281228", + "1.1317769927", + "1.1623239555", + "1.1177357692", + "1.1247281406", + "1.0974917958", + "1.102879594", + "1.1020467161", + "1.0942134005", + "1.0368340186", + "1.1854477709", + "1.2396127384", + "1.2066356617", + "1.1958340608", + "1.2031399754", + "1.1437351368", + "1.1563359677", + "1.1633935807", + "1.1586315484", + "1.2079945899", + "1.2139814621", + "1.2233803112", + "1.2354716914", + "1.1706477314", + "1.2124364525", + "1.2105680362", + "1.136982474", + "1.135110203", + "1.1633059767", + "1.1564093458", + "1.2082280971", + "1.1119039859", + "1.0572333275", + "1.0750470584", + "1.0377916626", + "1.0701913901", + "1.1534221509", + "1.1666645071", + "1.1815807345", + "1.1968171417", + "1.1105857372", + "1.0429747863", + "1.1033575042", + "1.1760617985", + "1.0218962933", + "1.0507548954", + "1.056877144", + "1.1136665159", + "1.066996634", + "1.0735102798", + "1.0782926258", + "1.0595412651", + "1.085787812", + "1.153065514", + "1.1596196782", + "1.1874051932", + "1.2004081834", + "1.1970284834", + "1.075665403", + "1.1027097101", + "1.0659987546", + "1.0714159731", + "1.123400585", + "1.1557138063", + "1.1476491847", + "1.1560646481", + "1.1431593054", + "1.1302662194", + "1.1348127074", + "1.1884379993", + "1.2438238207", + "1.3405811419", + "1.2537055598", + "1.2530752549", + "1.2809010066", + "1.2182886469", + "1.2851347662", + "1.2801808397", + "1.245155739", + "1.2544192047", + "1.1497053236", + "1.4412623889", + "1.3674170802", + "1.3766061006", + "1.3041157283", + "1.3164065699", + "1.3060214704", + "1.4082250795", + "1.3354567173", + "1.3736443322", + "1.3677272064", + "1.3456116884", + "1.2748389019", + "1.2775837454", + "1.3222422955", + "1.3160030539", + "1.3205918545", + "1.2859902667", + "1.2775712422", + "1.2695344008", + "1.3291835223", + "1.2880121664", + "1.2956808688", + "1.2662016976", + "1.2189486173", + "1.3225112696", + "1.2605953807", + "1.253728736", + "1.2739569679", + "1.3501012255", + "1.3623727841", + "1.3709616473", + "1.3660738787", + "1.3598691523", + "1.3497093575", + "1.3487274687", + "1.3420743868", + "1.4602692643", + "1.4411525394", + "1.3150876593", + "1.3643730023", + "1.3643003204", + "1.357941092", + "1.3604538625", + "1.4265363626", + "1.4210863402", + "1.3759648008", + "1.3619294572", + "1.3592765551", + "1.3477804711", + "1.3665138648", + "1.3349902406", + "1.3259460903", + "1.3217845304", + "1.3373452243", + "1.3328155352", + "1.3237135875", + "1.3302835019", + "1.3449588157", + "1.3597093882", + "1.368643755", + "1.3951084427", + "1.3466390502", + "1.3706508179", + "1.3815758415", + "1.3252641961", + "1.3795839352", + "1.3545160829", + "1.3304534938", + "1.329954723", + "1.3376480401", + "1.3316129304", + "1.3047450073", + "1.3126900654", + "1.3158322748", + "1.2871125593" + ] + }, + "essential_compounds": [ + "15dap", + "2ddglcn", + "3hpppn", + "4abut", + "4hbz", + "5mta", + "7dhcdchol", + "7ocholate", + "C02528", + "Lcyst", + "ac", + "acald", + "acgam", + "acnam", + "adn", + "adocbl", + "akg", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arg_L", + "asn_L", + "aso3", + "aso4", + "asp_L", + "btn", + "but", + "butso3", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cgly", + "chol", + "cholate", + "cinnm", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cynt", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "ddca", + "dgsn", + "dhcinnm", + "dhpppn", + "din", + "dms", + "dmso", + "drib", + "duri", + "etha", + "ethso3", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "fuc1p_L", + "fum", + "g6p", + "gal", + "galct_D", + "galctn_D", + "galt", + "galur", + "gbbtn", + "gcald", + "glc_D", + "glcn", + "glcr", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gsn", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hexs", + "hg2", + "his_L", + "hxan", + "ile_L", + "indole", + "ins", + "isetac", + "k", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man6p", + "man", + "mantr", + "melib", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mops", + "mso3", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "pac", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppa", + "ppi", + "pppn", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "rib_D", + "rmn", + "sbt_D", + "sel", + "selni", + "ser_D", + "ser_L", + "so4", + "spmd", + "stys", + "succ", + "sucr", + "sulfac", + "taur", + "thm", + "thr_L", + "thymd", + "tma", + "tmao", + "tre", + "trp_L", + "tsul", + "ttdca", + "tyr_L", + "ura", + "urea", + "uri", + "val_L", + "xan", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_436.json b/agents/agora/agent_436.json new file mode 100644 index 0000000000000000000000000000000000000000..3b240ae8961729f819a216353026092c68fb227c --- /dev/null +++ b/agents/agora/agent_436.json @@ -0,0 +1,1039 @@ +{ + "id": 436, + "name": "Gordonia_terrae_NBRC_100016", + "N_R": 1011, + "taxonomy": { + "k": 436, + "tax_distance": [ + "2.4201864355", + "2.0023085682", + "1.9956093391", + "2.2221920462", + "1.9035919723", + "1.9487206592", + "1.9300153614", + "1.9270727671", + "1.9910543654", + "1.9094102735", + "1.9264749769", + "2.0345972907", + "2.007615069", + "2.2356290269", + "2.283985844", + "2.3143183546", + "2.1946679567", + "2.2035920735", + "2.2390665491", + "1.7720508651", + "1.7073798884", + "1.4568586297", + "1.3902081973", + "1.2687285206", + "1.0945492418", + "1.0887380337", + "1.0853834623", + "1.0877445167", + "1.0719782267", + "1.0632924638", + "1.0657433699", + "1.167329306", + "1.1768671088", + "1.1732331988", + "1.1889292674", + "1.1574276874", + "1.1801736315", + "1.198479543", + "1.17944758", + "1.472388239", + "1.2172298603", + "1.1358688043", + "1.1426341105", + "1.1452416906", + "1.1420099486", + "1.1449833303", + "1.1400847254", + "1.1404697607", + "1.1346548499", + "1.1266936603", + "1.0682714823", + "1.0737838823", + "1.068043049", + "1.0401967784", + "1.0467185225", + "1.0758205197", + "1.0497436329", + "1.0477276053", + "1.0684820109", + "1.0661421162", + "1.0494002887", + "1.0747510603", + "1.0768258501", + "1.0754949569", + "1.0898861744", + "1.0916083363", + "1.0916083363", + "1.098253919", + "1.098253919", + "1.098253919", + "1.098253919", + "1.098253919", + "1.098253919", + "1.098253919", + "1.098253919", + "1.0941745563", + "1.0945202935", + "1.0880885859", + "1.0985810605", + "1.0976758186", + "1.093777649", + "1.0920349754", + "1.0933535452", + "1.0898516647", + "1.0847739164", + "1.088119042", + "1.0935648088", + "1.0890266171", + "1.074026661", + "1.0823977759", + "1.0771223907", + "1.0932703317", + "1.0885730425", + "1.0927066118", + "1.0706669012", + "1.0652667174", + "1.0793330725", + "1.0899934815", + "1.1067905245", + "1.0892002343", + "1.0792051158", + "1.0778872982", + "1.0586369183", + "1.0715154073", + "1.1303878523", + "1.1252359406", + "1.1921321979", + "1.1582929419", + "1.0954843011", + "1.0992105579", + "1.101944025", + "1.0948399435", + "1.0948399435", + "1.0762160413", + "1.0791201876", + "1.0710196709", + "1.1065453696", + "1.0433228201", + "1.0212319067", + "1.039096263", + "1.0258252677", + "1.0262508601", + "1.1445025737", + "1.1516930245", + "1.1731340374", + "0.9777303217", + "1.147479275", + "1.1541545091", + "1.1387914168", + "1.158425422", + "1.147612508", + "1.1526789943", + "1.1441827167", + "1.1372326116", + "1.1281029145", + "1.1287610349", + "1.1476749581", + "1.1207935142", + "1.1028293037", + "1.1967172446", + "1.1980911183", + "1.167402706", + "1.2249823966", + "1.1625609841", + "1.1680549269", + "1.1650939018", + "1.1898008869", + "1.1789784381", + "1.0871353661", + "1.0582252766", + "1.0194142166", + "0.9973129234", + "0.9886711171", + "0.983550926", + "1.0204225517", + "1.0229176776", + "0.9947296087", + "0.9830916548", + "0.9866781638", + "1.0556312746", + "1.0623396567", + "1.0319687101", + "1.1558867833", + "1.1503718879", + "1.1527129391", + "1.1104360129", + "1.1065820334", + "1.1444886071", + "1.1363117928", + "1.1050697703", + "1.106629129", + "1.1246491227", + "1.081344328", + "1.070508199", + "1.0716687515", + "1.1051550929", + "1.0933315402", + "1.074704683", + "1.0936933053", + "1.0750253066", + "1.0888402488", + "1.0830576778", + "1.0819892958", + "1.1025477475", + "1.0983352001", + "1.0812161547", + "1.1154445287", + "1.100210287", + "1.105322596", + "1.1047159105", + "1.0691142801", + "1.0650940719", + "1.0496267203", + "1.0679732255", + "1.0649068507", + "1.0392152569", + "1.022202509", + "1.0168948581", + "1.0216366427", + "1.020778032", + "1.0535439919", + "1.0525633301", + "1.0766031277", + "1.0544941007", + "1.0149861087", + "1.0181505195", + "1.0432124115", + "1.0395035274", + "1.0152529107", + "1.0077955608", + "1.0101488201", + "1.019326355", + "0.9450922581", + "0.9876953589", + "0.9719915882", + "0.965829825", + "0.9595495802", + "0.9474469626", + "0.950617302", + "0.9927893914", + "1.4271812226", + "1.5119594217", + "1.4244948466", + "1.4096771345", + "1.3880045017", + "0.9416821606", + "0.9604865666", + "1.0104194317", + "0.9720586797", + "0.9872958827", + "1.1008330203", + "1.0546036274", + "1.0762553016", + "1.0349219555", + "0.948260267", + "0.9606426099", + "0.9671336811", + "1.0275602179", + "1.0187606853", + "1.0168419543", + "1.0428442354", + "1.0401517998", + "1.0313837442", + "1.0629043678", + "1.0709878323", + "1.0551765591", + "1.0285583093", + "1.0232127362", + "1.0286234121", + "1.0173302709", + "0.9622993761", + "0.967384198", + "0.9666289745", + "1.013440559", + "0.9688702796", + "0.9513220812", + "1.0287468874", + "0.9820142476", + "0.9570967851", + "0.9701322763", + "0.9407477627", + "0.9059614045", + "0.9900494403", + "0.9924032267", + "0.9971804364", + "1.0025260344", + "0.9682250086", + "1.0288807579", + "1.0357168733", + "1.0322278708", + "1.0448929362", + "1.0309768934", + "1.0107609872", + "1.0021602185", + "1.0488120867", + "1.0680903594", + "1.1187693793", + "0.9616917631", + "0.930864469", + "1.0238701829", + "1.022853483", + "1.0100744073", + "0.9669991202", + "1.0318224344", + "1.0227656822", + "1.0254179445", + "1.0565572498", + "0.9982161166", + "0.9834824138", + "0.9651072855", + "0.9934229242", + "0.9649299989", + "1.0200759162", + "1.0510693162", + "1.073702164", + "1.030385987", + "1.0017321985", + "1.0219790952", + "1.0017327068", + "0.9881187319", + "0.952863661", + "0.9878132205", + "0.9189027446", + "0.9361681156", + "1.0189768266", + "1.0073421658", + "1.0044437395", + "1.0145980467", + "1.0229609322", + "1.012283571", + "1.0242241386", + "1.0126906811", + "1.0102291745", + "0.9786400429", + "0.9846349487", + "0.9908929459", + "0.9780474005", + "1.0115860374", + "0.9438152491", + "1.0023131894", + "0.9994579568", + "0.9896984893", + "0.9889236129", + "1.0150657377", + "0.9916745009", + "0.9613683629", + "0.8760402635", + "0.8878448083", + "0.8888620842", + "0.832885307", + "0.8450122275", + "0.8417238255", + "0.8230496264", + "0.8317315781", + "0.8276907912", + "0.8177276414", + "0.843528668", + "0.8402173313", + "0.803588053", + "0.8221264857", + "0.7798852267", + "0.7825641655", + "0.7965545808", + "0.7980556905", + "0.7847258454", + "0.7742044513", + "0.8009588836", + "0.7868819365", + "0.7468756394", + "0.754239175", + "0.9238067385", + "0.7441402297", + "0.748684584", + "0.7522883579", + "0.7482357497", + "0.715353723", + "0.7451623978", + "0.76522164", + "0.7672143637", + "0.7652967643", + "0.7486136753", + "0.7474537457", + "0.7132173359", + "0.7154931374", + "0.8413765309", + "0.852570887", + "0.7388576627", + "0.7445150745", + "0.7345863829", + "0.6987182023", + "0.7243265992", + "0.7150614847", + "0.7071967369", + "0.7063428065", + "0.7138673624", + "0.7078598886", + "0.7269288075", + "0.7208524907", + "0.7325748415", + "0.7273420657", + "0.7141258165", + "0.7021921148", + "0.7118528407", + "0.7076993564", + "0.713601659", + "0.7056533142", + "0.6810927785", + "0.690505745", + "0.6843373296", + "0.7123685172", + "0.7100635696", + "0.5044900515", + "0.5183211743", + "0.531013285", + "0.5619322577", + "0.5655561566", + "0.5543430134", + "0.5703934113", + "0.5509433235", + "0.5473666224", + "0.5642836813", + "0.5540846731", + "0.5586434449", + "0.5666964666", + "0.5524816301", + "0.5443064235", + "0.604397403", + "0.5808596297", + "0.5811766557", + "0.5818200696", + "0.5763274749", + "0.5664328508", + "0.6266099272", + "0.5975187943", + "0.5197615603", + "0.5385765797", + "0.5583423379", + "0.5344520282", + "0.5161554029", + "0.497625517", + "0.5139307085", + "0.5212871087", + "0.5036852857", + "0.5591933515", + "0.5653646086", + "0.5690822661", + "0.6043443577", + "0.5583559757", + "0.5840317834", + "0.4689955204", + "0.4518770823", + "0.3782913204", + "0.389280009", + "0.3233512995", + "0.3246281759", + "0.0", + "0.409986244", + "0.4742276929", + "0.4979668223", + "0.4853913611", + "0.4631885414", + "0.6443795471", + "0.6506788827", + "0.6306805773", + "0.6432090232", + "0.6417350255", + "0.6101368157", + "0.6199359552", + "0.6688645052", + "0.7042886683", + "0.679101489", + "0.6597896868", + "0.6086436116", + "0.6204422123", + "0.6201356621", + "0.6509515575", + "0.6513092533", + "0.5840267322", + "0.7217993386", + "0.7263829798", + "0.7361265558", + "0.7158880999", + "0.6775834197", + "0.7469769165", + "0.727940593", + "0.7328022812", + "0.6695904348", + "0.7013025482", + "0.7099386069", + "0.7215963611", + "0.7040318216", + "0.690667506", + "0.6550345244", + "0.654120152", + "0.6605868418", + "0.7364251245", + "0.7165416368", + "0.7919245352", + "0.7459349821", + "0.7002774054", + "0.7064824423", + "0.7114227317", + "0.706114073", + "0.700312472", + "0.727752741", + "0.7098962772", + "0.7018467836", + "0.6928338166", + "0.7147712936", + "0.7092694488", + "0.7109033408", + "0.6748532497", + "0.6770097211", + "0.6501355082", + "0.7333991987", + "0.7091374224", + "0.6944956088", + "0.6747642629", + "0.8104879536", + "0.8137477619", + "0.8416547432", + "0.7962905642", + "0.8003938802", + "0.8144423597", + "0.8281588255", + "0.8517980467", + "0.792993355", + "0.7710071871", + "0.7996134196", + "0.767864075", + "0.7711779003", + "0.7841451471", + "0.7644997822", + "0.7717621264", + "0.7573972735", + "0.7533088446", + "0.8350524773", + "0.8272439429", + "0.7815631334", + "0.8023300961", + "0.7990108254", + "0.8522201849", + "0.7796185392", + "0.7638297623", + "0.7814622892", + "0.7822854049", + "0.7837152671", + "0.8091362371", + "0.8210608865", + "0.8795249067", + "0.8829113009", + "0.8659569784", + "0.8511891161", + "0.8319629832", + "0.8010971039", + "1.1623791657", + "1.1868196422", + "1.1506643637", + "1.1613149684", + "1.1385594339", + "1.124807813", + "1.2151561985", + "1.2440003836", + "1.2451183058", + "1.1693874412", + "1.1669195659", + "1.1669862815", + "1.1607763873", + "1.1788635959", + "1.1548807401", + "1.1307329096", + "1.0935297997", + "1.1016727973", + "1.0798542187", + "1.1005858682", + "1.0588702979", + "1.0733578308", + "1.075010257", + "1.080626098", + "1.0731332826", + "1.0726678835", + "1.0699287356", + "1.0602311085", + "1.0779383308", + "1.0580846952", + "1.0605318461", + "1.0562720117", + "1.0709304587", + "1.0900305608", + "1.0333284421", + "1.0557292163", + "1.0637668471", + "1.0629089375", + "1.0461655921", + "1.0353877526", + "1.0355189103", + "1.0402115579", + "1.0435283317", + "1.0762489437", + "1.1074510322", + "1.1023790543", + "1.0263207838", + "1.0272120688", + "1.0224637571", + "1.0285130072", + "0.9495446892", + "0.8465013721", + "0.8601338851", + "1.0993609868", + "1.3072116126", + "1.0608521757", + "1.1213674612", + "1.1227594102", + "1.0986228028", + "1.106301306", + "1.129021697", + "1.1188232291", + "1.1362323251", + "1.1373863865", + "1.1339490565", + "1.1336100981", + "1.1603945704", + "1.1303520527", + "1.1339913312", + "1.1378159127", + "1.1380354465", + "1.1013880821", + "1.1062643973", + "1.1273104374", + "1.1077626244", + "1.1151033715", + "1.0670147861", + "1.0594628804", + "1.0901754614", + "1.0863512144", + "1.0987003066", + "1.1035579424", + "1.0982025881", + "1.0977660179", + "1.0888171467", + "1.1008335669", + "1.0784828256", + "1.0944313442", + "1.1031440833", + "1.0988588014", + "1.1070563678", + "1.1223125893", + "1.1177819368", + "1.0588762328", + "1.096626743", + "1.0871281396", + "1.0492222109", + "1.3193975384", + "1.3520341962", + "1.3175107569", + "1.3261896104", + "1.3000800666", + "1.1138702267", + "0.9671404548", + "0.9591730295", + "1.0125081406", + "0.9757802259", + "0.980820717", + "0.9785901189", + "0.9662436982", + "0.9711862993", + "0.9244360148", + "0.9797314909", + "0.9740937396", + "1.0195791625", + "0.9976743407", + "0.9900291045", + "0.9773592305", + "0.8902480952", + "0.8941657113", + "1.0023204365", + "0.9848764402", + "0.9888237527", + "0.9836361017", + "0.9562199689", + "1.0452953339", + "0.9928649", + "0.9929112749", + "1.0899601448", + "1.1205071076", + "1.0759189213", + "1.0829112927", + "1.0556749479", + "1.0610627461", + "1.0602298682", + "1.0523965526", + "0.9950171707", + "1.143630923", + "1.1977958905", + "1.1648188138", + "1.1540172129", + "1.1613231275", + "1.1019182889", + "1.1145191198", + "1.1215767328", + "1.1168147005", + "1.166177742", + "1.1721646142", + "1.1815634633", + "1.1936548435", + "1.1288308835", + "1.1706196046", + "1.1687511883", + "1.0951656261", + "1.0932933551", + "1.1214891288", + "1.1145924979", + "1.1664112492", + "1.070087138", + "1.0154164796", + "1.0332302105", + "0.9959748147", + "1.0283745422", + "1.111605303", + "1.1248476592", + "1.1397638866", + "1.1550002938", + "1.0687688893", + "1.0011579384", + "1.0615406563", + "1.1342449506", + "0.9800794454", + "1.0089380475", + "1.0150602961", + "1.071849668", + "1.0251797861", + "1.0316934319", + "1.0364757779", + "1.0177244172", + "1.0439709641", + "1.1112486661", + "1.1178028303", + "1.1455883453", + "1.1585913355", + "1.1552116355", + "1.0338485551", + "1.0608928622", + "1.0241819067", + "1.0295991252", + "1.0815837371", + "1.1138969584", + "1.1058323368", + "1.1142478002", + "1.1013424575", + "1.0884493715", + "1.0929958595", + "1.1466211514", + "1.2020069728", + "1.298764294", + "1.2118887119", + "1.211258407", + "1.2390841587", + "1.176471799", + "1.2433179183", + "1.2383639918", + "1.2033388911", + "1.2126023568", + "1.1078884757", + "1.399445541", + "1.3256002323", + "1.3347892527", + "1.2622988804", + "1.274589722", + "1.2642046225", + "1.3664082316", + "1.2936398694", + "1.3318274843", + "1.3259103585", + "1.3037948405", + "1.233022054", + "1.2357668975", + "1.2804254476", + "1.274186206", + "1.2787750066", + "1.2441734188", + "1.2357543943", + "1.2277175529", + "1.2873666744", + "1.2461953185", + "1.2538640209", + "1.2243848497", + "1.1771317694", + "1.2806944217", + "1.2187785328", + "1.2119118881", + "1.23214012", + "1.3082843776", + "1.3205559362", + "1.3291447994", + "1.3242570308", + "1.3180523044", + "1.3078925096", + "1.3069106208", + "1.3002575389", + "1.4184524164", + "1.3993356915", + "1.2732708114", + "1.3225561544", + "1.3224834725", + "1.3161242441", + "1.3186370146", + "1.3847195147", + "1.3792694923", + "1.3341479529", + "1.3201126093", + "1.3174597072", + "1.3059636232", + "1.3246970169", + "1.2931733927", + "1.2841292424", + "1.2799676825", + "1.2955283764", + "1.2909986873", + "1.2818967396", + "1.288466654", + "1.3031419678", + "1.3178925403", + "1.3268269071", + "1.3532915948", + "1.3048222023", + "1.32883397", + "1.3397589936", + "1.2834473482", + "1.3377670873", + "1.312699235", + "1.2886366459", + "1.2881378751", + "1.2958311922", + "1.2897960825", + "1.2629281594", + "1.2708732175", + "1.2740154269", + "1.2452957114" + ] + }, + "essential_compounds": [ + "15dap", + "2ddglcn", + "2hyoxplac", + "34dhpha", + "3hphac", + "3hpppn", + "4abut", + "4hbz", + "4hoxpacd", + "5mta", + "7dhcdchol", + "7ocholate", + "C02528", + "Lcyst", + "ac", + "acald", + "acgam", + "adn", + "adocbl", + "akg", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arg_L", + "asn_L", + "aso3", + "aso4", + "asp_L", + "btn", + "butso3", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cholate", + "cinnm", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cynt", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "ddca", + "dgchol", + "dgsn", + "dhcinnm", + "dhpppn", + "diact", + "din", + "dms", + "dmso", + "drib", + "duri", + "etha", + "ethso3", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "fuc1p_L", + "fum", + "g6p", + "gal", + "galct_D", + "galctn_D", + "galt", + "galur", + "gam", + "gbbtn", + "gcald", + "gchola", + "glc_D", + "glcn", + "glcr", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gsn", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hexs", + "hg2", + "his_L", + "hxan", + "ile_L", + "indole", + "ins", + "isetac", + "k", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man6p", + "man", + "mantr", + "melib", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mops", + "mso3", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "oxa", + "pac", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppa", + "ppi", + "pppn", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "rib_D", + "rmn", + "salcn", + "sbt_D", + "sel", + "selni", + "ser_D", + "ser_L", + "so3", + "so4", + "spmd", + "succ", + "sucr", + "sulfac", + "taur", + "tchola", + "tdchola", + "thm", + "thr_L", + "thymd", + "tma", + "tmao", + "tre", + "trp_L", + "tsul", + "ttdca", + "tym", + "tyr_L", + "ura", + "urea", + "uri", + "val_L", + "xan", + "xtsn", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_437.json b/agents/agora/agent_437.json new file mode 100644 index 0000000000000000000000000000000000000000..3dc3615ad887b4bf316cad033358de0e4cd76b2d --- /dev/null +++ b/agents/agora/agent_437.json @@ -0,0 +1,1024 @@ +{ + "id": 437, + "name": "Gordonibacter_pamelaeae_7_10_1_bT_DSM_19378", + "N_R": 851, + "taxonomy": { + "k": 437, + "tax_distance": [ + "2.4366056065", + "2.0187277392", + "2.0120285101", + "2.2386112172", + "1.9200111433", + "1.9651398302", + "1.9464345324", + "1.9434919381", + "2.0074735364", + "1.9258294445", + "1.9428941479", + "2.0510164617", + "2.02403424", + "2.2520481979", + "2.300405015", + "2.3307375256", + "2.2110871277", + "2.2200112445", + "2.2554857201", + "1.7884700361", + "1.7237990594", + "1.4732778007", + "1.4066273683", + "1.2851476916", + "1.1109684128", + "1.1051572047", + "1.1018026333", + "1.1041636877", + "1.0883973977", + "1.0797116348", + "1.0821625409", + "1.183748477", + "1.1932862798", + "1.1896523698", + "1.2053484384", + "1.1738468584", + "1.1965928025", + "1.214898714", + "1.195866751", + "1.48880741", + "1.2336490313", + "1.1522879753", + "1.1590532815", + "1.1616608616", + "1.1584291196", + "1.1614025013", + "1.1565038964", + "1.1568889317", + "1.1510740209", + "1.1431128313", + "1.0846906533", + "1.0902030533", + "1.08446222", + "1.0566159494", + "1.0631376935", + "1.0922396907", + "1.0661628039", + "1.0641467763", + "1.0849011819", + "1.0825612872", + "1.0658194597", + "1.0911702313", + "1.0932450211", + "1.0919141279", + "1.1063053454", + "1.1080275073", + "1.1080275073", + "1.11467309", + "1.11467309", + "1.11467309", + "1.11467309", + "1.11467309", + "1.11467309", + "1.11467309", + "1.11467309", + "1.1105937273", + "1.1109394645", + "1.1045077569", + "1.1150002315", + "1.1140949896", + "1.11019682", + "1.1084541464", + "1.1097727162", + "1.1062708357", + "1.1011930874", + "1.104538213", + "1.1099839798", + "1.1054457881", + "1.090445832", + "1.0988169469", + "1.0935415617", + "1.1096895027", + "1.1049922135", + "1.1091257828", + "1.0870860722", + "1.0816858884", + "1.0957522435", + "1.1064126525", + "1.1232096955", + "1.1056194053", + "1.0956242868", + "1.0943064692", + "1.0750560893", + "1.0879345783", + "1.1468070233", + "1.1416551116", + "1.2085513689", + "1.1747121129", + "1.1119034721", + "1.1156297289", + "1.118363196", + "1.1112591145", + "1.1112591145", + "1.0926352123", + "1.0955393586", + "1.0874388419", + "1.1229645406", + "1.0597419911", + "1.0376510777", + "1.055515434", + "1.0422444387", + "1.0426700311", + "1.1609217447", + "1.1681121955", + "1.1895532084", + "0.9941494927", + "1.163898446", + "1.1705736801", + "1.1552105878", + "1.174844593", + "1.164031679", + "1.1690981653", + "1.1606018877", + "1.1536517826", + "1.1445220855", + "1.1451802059", + "1.1640941291", + "1.1372126852", + "1.1192484747", + "1.2131364156", + "1.2145102893", + "1.183821877", + "1.2414015676", + "1.1789801551", + "1.1844740979", + "1.1815130728", + "1.2062200579", + "1.1953976091", + "1.1035545371", + "1.0746444476", + "1.0358333876", + "1.0137320944", + "1.0050902881", + "0.999970097", + "1.0368417227", + "1.0393368486", + "1.0111487797", + "0.9995108258", + "1.0030973348", + "1.0720504456", + "1.0787588277", + "1.0483878811", + "1.1723059543", + "1.1667910589", + "1.1691321101", + "1.1268551839", + "1.1230012044", + "1.1609077781", + "1.1527309638", + "1.1214889413", + "1.1230483", + "1.1410682937", + "1.097763499", + "1.08692737", + "1.0880879225", + "1.1215742639", + "1.1097507112", + "1.091123854", + "1.1101124763", + "1.0914444776", + "1.1052594198", + "1.0994768488", + "1.0984084668", + "1.1189669185", + "1.1147543711", + "1.0976353257", + "1.1318636997", + "1.116629458", + "1.121741767", + "1.1211350815", + "1.0855334511", + "1.0815132429", + "1.0660458913", + "1.0843923965", + "1.0813260217", + "1.0556344279", + "1.03862168", + "1.0333140291", + "1.0380558137", + "1.037197203", + "1.0699631629", + "1.0689825011", + "1.0930222987", + "1.0709132717", + "1.0314052797", + "1.0345696905", + "1.0596315825", + "1.0559226984", + "1.0316720817", + "1.0242147318", + "1.0265679911", + "1.035745526", + "0.9615114291", + "1.0041145299", + "0.9884107592", + "0.982248996", + "0.9759687512", + "0.9638661336", + "0.967036473", + "1.0092085624", + "1.4436003936", + "1.5283785927", + "1.4409140176", + "1.4260963055", + "1.4044236727", + "0.9581013316", + "0.9769057376", + "1.0268386027", + "0.9884778507", + "1.0037150537", + "1.1172521913", + "1.0710227984", + "1.0926744726", + "1.0513411265", + "0.964679438", + "0.9770617809", + "0.9835528521", + "1.0439793889", + "1.0351798563", + "1.0332611253", + "1.0592634064", + "1.0565709708", + "1.0478029152", + "1.0793235388", + "1.0874070033", + "1.0715957301", + "1.0449774803", + "1.0396319072", + "1.0450425831", + "1.0337494419", + "0.9787185471", + "0.983803369", + "0.9830481455", + "1.02985973", + "0.9852894506", + "0.9677412522", + "1.0451660584", + "0.9984334186", + "0.9735159561", + "0.9865514473", + "0.9571669337", + "0.9223805755", + "1.0064686113", + "1.0088223977", + "1.0135996074", + "1.0189452054", + "0.9846441796", + "1.0452999289", + "1.0521360443", + "1.0486470418", + "1.0613121072", + "1.0473960644", + "1.0271801582", + "1.0185793895", + "1.0652312577", + "1.0845095304", + "1.1351885503", + "0.9781109341", + "0.94728364", + "1.0402893539", + "1.039272654", + "1.0264935783", + "0.9834182912", + "1.0482416054", + "1.0391848532", + "1.0418371155", + "1.0729764208", + "1.0146352876", + "0.9999015848", + "0.9815264565", + "1.0098420952", + "0.9813491699", + "1.0364950872", + "1.0674884872", + "1.090121335", + "1.046805158", + "1.0181513695", + "1.0383982662", + "1.0181518778", + "1.0045379029", + "0.969282832", + "1.0042323915", + "0.9353219156", + "0.9525872866", + "1.0353959976", + "1.0237613368", + "1.0208629105", + "1.0310172177", + "1.0393801032", + "1.028702742", + "1.0406433096", + "1.0291098521", + "1.0266483455", + "0.9950592139", + "1.0010541197", + "1.0073121169", + "0.9944665715", + "1.0280052084", + "0.9602344201", + "1.0187323604", + "1.0158771278", + "1.0061176603", + "1.0053427839", + "1.0314849087", + "1.0080936719", + "0.9777875339", + "0.8924594345", + "0.9042639793", + "0.9052812552", + "0.849304478", + "0.8614313985", + "0.8581429965", + "0.8394687974", + "0.8481507491", + "0.8441099622", + "0.8341468124", + "0.859947839", + "0.8566365023", + "0.820007224", + "0.8385456567", + "0.7963043977", + "0.7989833365", + "0.8129737518", + "0.8144748615", + "0.8011450164", + "0.7906236223", + "0.8173780546", + "0.8033011075", + "0.7632948104", + "0.770658346", + "0.9402259095", + "0.7605594007", + "0.765103755", + "0.7687075289", + "0.7646549207", + "0.731772894", + "0.7615815688", + "0.781640811", + "0.7836335347", + "0.7817159353", + "0.7650328463", + "0.7638729167", + "0.7296365069", + "0.7319123084", + "0.8577957019", + "0.868990058", + "0.7552768337", + "0.7609342455", + "0.7510055539", + "0.7151373733", + "0.7407457702", + "0.7314806557", + "0.7236159079", + "0.7227619775", + "0.7302865334", + "0.7242790596", + "0.7433479785", + "0.7372716617", + "0.7489940125", + "0.7437612367", + "0.7305449875", + "0.7186112858", + "0.7282720117", + "0.7241185274", + "0.73002083", + "0.7220724852", + "0.6975119495", + "0.706924916", + "0.7007565006", + "0.7287876882", + "0.7264827406", + "0.5209092225", + "0.5347403453", + "0.547432456", + "0.5783514287", + "0.5819753276", + "0.5707621844", + "0.5868125823", + "0.5673624945", + "0.5637857934", + "0.5807028523", + "0.5705038441", + "0.5750626159", + "0.5831156376", + "0.5689008011", + "0.5607255945", + "0.620816574", + "0.5972788007", + "0.5975958267", + "0.5982392406", + "0.5927466459", + "0.5828520218", + "0.6430290982", + "0.6139379653", + "0.5361807313", + "0.5549957507", + "0.5747615089", + "0.5508711992", + "0.5325745739", + "0.514044688", + "0.5303498795", + "0.5377062797", + "0.5201044567", + "0.5756125225", + "0.5817837796", + "0.5855014371", + "0.6207635287", + "0.5747751467", + "0.6004509544", + "0.4854146914", + "0.4682962533", + "0.5054662364", + "0.516454925", + "0.4505262155", + "0.4518030919", + "0.409986244", + "0.0", + "0.4906468639", + "0.5143859933", + "0.5018105321", + "0.4796077124", + "0.6607987181", + "0.6670980537", + "0.6470997483", + "0.6596281942", + "0.6581541965", + "0.6265559867", + "0.6363551262", + "0.6852836762", + "0.7207078393", + "0.69552066", + "0.6762088578", + "0.6250627826", + "0.6368613833", + "0.6365548331", + "0.6673707285", + "0.6677284243", + "0.6004459032", + "0.7382185096", + "0.7428021508", + "0.7525457268", + "0.7323072709", + "0.6940025907", + "0.7633960875", + "0.744359764", + "0.7492214522", + "0.6860096058", + "0.7177217192", + "0.7263577779", + "0.7380155321", + "0.7204509926", + "0.707086677", + "0.6714536954", + "0.670539323", + "0.6770060128", + "0.7528442955", + "0.7329608078", + "0.8083437062", + "0.7623541531", + "0.7166965764", + "0.7229016133", + "0.7278419027", + "0.722533244", + "0.716731643", + "0.744171912", + "0.7263154482", + "0.7182659546", + "0.7092529876", + "0.7311904646", + "0.7256886198", + "0.7273225118", + "0.6912724207", + "0.6934288921", + "0.6665546792", + "0.7498183697", + "0.7255565934", + "0.7109147798", + "0.6911834339", + "0.8269071246", + "0.8301669329", + "0.8580739142", + "0.8127097352", + "0.8168130512", + "0.8308615307", + "0.8445779965", + "0.8682172177", + "0.809412526", + "0.7874263581", + "0.8160325906", + "0.784283246", + "0.7875970713", + "0.8005643181", + "0.7809189532", + "0.7881812974", + "0.7738164445", + "0.7697280156", + "0.8514716483", + "0.8436631139", + "0.7979823044", + "0.8187492671", + "0.8154299964", + "0.8686393559", + "0.7960377102", + "0.7802489333", + "0.7978814602", + "0.7987045759", + "0.8001344381", + "0.8255554081", + "0.8374800575", + "0.8959440777", + "0.8993304719", + "0.8823761494", + "0.8676082871", + "0.8483821542", + "0.8175162749", + "1.1787983367", + "1.2032388132", + "1.1670835347", + "1.1777341394", + "1.1549786049", + "1.141226984", + "1.2315753695", + "1.2604195546", + "1.2615374768", + "1.1858066122", + "1.1833387369", + "1.1834054525", + "1.1771955583", + "1.1952827669", + "1.1712999111", + "1.1471520806", + "1.1099489707", + "1.1180919683", + "1.0962733897", + "1.1170050392", + "1.0752894689", + "1.0897770018", + "1.091429428", + "1.097045269", + "1.0895524536", + "1.0890870545", + "1.0863479066", + "1.0766502795", + "1.0943575018", + "1.0745038662", + "1.0769510171", + "1.0726911827", + "1.0873496297", + "1.1064497318", + "1.0497476131", + "1.0721483873", + "1.0801860181", + "1.0793281085", + "1.0625847631", + "1.0518069236", + "1.0519380813", + "1.0566307289", + "1.0599475027", + "1.0926681147", + "1.1238702032", + "1.1187982253", + "1.0427399548", + "1.0436312398", + "1.0388829281", + "1.0449321782", + "0.9659638602", + "0.8629205431", + "0.8765530561", + "1.1157801578", + "1.3236307836", + "1.0772713467", + "1.1377866322", + "1.1391785812", + "1.1150419738", + "1.122720477", + "1.145440868", + "1.1352424001", + "1.1526514961", + "1.1538055575", + "1.1503682275", + "1.1500292691", + "1.1768137414", + "1.1467712237", + "1.1504105022", + "1.1542350837", + "1.1544546175", + "1.1178072531", + "1.1226835683", + "1.1437296084", + "1.1241817954", + "1.1315225425", + "1.0834339571", + "1.0758820514", + "1.1065946324", + "1.1027703854", + "1.1151194776", + "1.1199771134", + "1.1146217591", + "1.1141851889", + "1.1052363177", + "1.1172527379", + "1.0949019966", + "1.1108505152", + "1.1195632543", + "1.1152779724", + "1.1234755388", + "1.1387317603", + "1.1342011078", + "1.0752954038", + "1.113045914", + "1.1035473106", + "1.0656413819", + "1.3358167094", + "1.3684533672", + "1.3339299279", + "1.3426087814", + "1.3164992376", + "1.1302893977", + "0.9835596258", + "0.9755922005", + "1.0289273116", + "0.9921993969", + "0.997239888", + "0.9950092899", + "0.9826628692", + "0.9876054703", + "0.9408551858", + "0.9961506619", + "0.9905129106", + "1.0359983335", + "1.0140935117", + "1.0064482755", + "0.9937784015", + "0.9066672662", + "0.9105848823", + "1.0187396075", + "1.0012956112", + "1.0052429237", + "1.0000552727", + "0.9726391399", + "1.0617145049", + "1.009284071", + "1.0093304459", + "1.1063793158", + "1.1369262786", + "1.0923380923", + "1.0993304637", + "1.0720941189", + "1.0774819171", + "1.0766490392", + "1.0688157236", + "1.0114363417", + "1.160050094", + "1.2142150615", + "1.1812379848", + "1.1704363839", + "1.1777422985", + "1.1183374599", + "1.1309382908", + "1.1379959038", + "1.1332338715", + "1.182596913", + "1.1885837852", + "1.1979826343", + "1.2100740145", + "1.1452500545", + "1.1870387756", + "1.1851703593", + "1.1115847971", + "1.1097125261", + "1.1379082998", + "1.1310116689", + "1.1828304202", + "1.086506309", + "1.0318356506", + "1.0496493815", + "1.0123939857", + "1.0447937132", + "1.128024474", + "1.1412668302", + "1.1561830576", + "1.1714194648", + "1.0851880603", + "1.0175771094", + "1.0779598273", + "1.1506641216", + "0.9964986164", + "1.0253572185", + "1.0314794671", + "1.088268839", + "1.0415989571", + "1.0481126029", + "1.0528949489", + "1.0341435882", + "1.0603901351", + "1.1276678371", + "1.1342220013", + "1.1620075163", + "1.1750105065", + "1.1716308065", + "1.0502677261", + "1.0773120332", + "1.0406010777", + "1.0460182962", + "1.0980029081", + "1.1303161294", + "1.1222515078", + "1.1306669712", + "1.1177616285", + "1.1048685425", + "1.1094150305", + "1.1630403224", + "1.2184261438", + "1.315183465", + "1.2283078829", + "1.227677578", + "1.2555033297", + "1.19289097", + "1.2597370893", + "1.2547831628", + "1.2197580621", + "1.2290215278", + "1.1243076467", + "1.415864712", + "1.3420194033", + "1.3512084237", + "1.2787180514", + "1.291008893", + "1.2806237935", + "1.3828274026", + "1.3100590404", + "1.3482466553", + "1.3423295295", + "1.3202140115", + "1.249441225", + "1.2521860685", + "1.2968446186", + "1.290605377", + "1.2951941776", + "1.2605925898", + "1.2521735653", + "1.2441367239", + "1.3037858454", + "1.2626144895", + "1.2702831919", + "1.2408040207", + "1.1935509404", + "1.2971135927", + "1.2351977038", + "1.2283310591", + "1.248559291", + "1.3247035486", + "1.3369751072", + "1.3455639704", + "1.3406762018", + "1.3344714754", + "1.3243116806", + "1.3233297918", + "1.3166767099", + "1.4348715874", + "1.4157548625", + "1.2896899824", + "1.3389753254", + "1.3389026435", + "1.3325434151", + "1.3350561856", + "1.4011386857", + "1.3956886633", + "1.3505671239", + "1.3365317803", + "1.3338788782", + "1.3223827942", + "1.3411161879", + "1.3095925637", + "1.3005484134", + "1.2963868535", + "1.3119475474", + "1.3074178583", + "1.2983159106", + "1.304885825", + "1.3195611388", + "1.3343117113", + "1.3432460781", + "1.3697107658", + "1.3212413733", + "1.345253141", + "1.3561781646", + "1.2998665192", + "1.3541862583", + "1.329118406", + "1.3050558169", + "1.3045570461", + "1.3122503632", + "1.3062152535", + "1.2793473304", + "1.2872923885", + "1.2904345979", + "1.2617148824" + ] + }, + "essential_compounds": [ + "15dap", + "2ddglcn", + "2hyoxplac", + "4abut", + "4hbz", + "5mta", + "7dhcdchol", + "7ocholate", + "C02528", + "Lcyst", + "ac", + "acac", + "acald", + "acgam", + "adn", + "adocbl", + "akg", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arg_L", + "asn_L", + "asp_L", + "btn", + "but", + "butso3", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cholate", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "ddca", + "dgsn", + "din", + "dms", + "dmso", + "drib", + "duri", + "etha", + "ethso3", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "fuc1p_L", + "fum", + "g6p", + "gal", + "galct_D", + "galctn_D", + "galt", + "galur", + "gbbtn", + "gcald", + "glc_D", + "glcn", + "glcr", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glyclt", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gsn", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hexs", + "hg2", + "his_L", + "hxan", + "idon_L", + "ile_L", + "indole", + "ins", + "isetac", + "k", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man6p", + "man", + "mantr", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mops", + "mso3", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "oxa", + "pac", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppa", + "ppi", + "pppn", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "rib_D", + "rmn", + "salcn", + "sbt_D", + "sel", + "selni", + "ser_D", + "ser_L", + "so4", + "spmd", + "succ", + "sucr", + "sulfac", + "taur", + "thm", + "thr_L", + "thymd", + "tma", + "tmao", + "tre", + "trp_L", + "tsul", + "ttdca", + "tyr_L", + "ura", + "urea", + "uri", + "val_L", + "xan", + "xtsn", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_438.json b/agents/agora/agent_438.json new file mode 100644 index 0000000000000000000000000000000000000000..b9e18e17a8f6a0c9d72b860557113ed6689d33e5 --- /dev/null +++ b/agents/agora/agent_438.json @@ -0,0 +1,1034 @@ +{ + "id": 438, + "name": "Granulicatella_adiacens_ATCC_49175", + "N_R": 1261, + "taxonomy": { + "k": 438, + "tax_distance": [ + "2.367360354", + "1.9494824867", + "1.9427832576", + "2.1693659647", + "1.8507658908", + "1.8958945777", + "1.8771892799", + "1.8742466856", + "1.9382282839", + "1.856584192", + "1.8736488954", + "1.9817712092", + "1.9547889875", + "2.1828029454", + "2.2311597625", + "2.2614922731", + "2.1418418752", + "2.150765992", + "2.1862404676", + "1.7192247836", + "1.6545538069", + "1.4040325482", + "1.3373821158", + "1.2159024391", + "1.0417231603", + "1.0359119522", + "1.0325573808", + "1.0349184352", + "1.0191521452", + "1.0104663823", + "1.0129172884", + "1.1145032245", + "1.1240410273", + "1.1204071173", + "1.1361031859", + "1.1046016059", + "1.12734755", + "1.1456534615", + "1.1266214985", + "1.4195621575", + "1.1644037788", + "1.0830427228", + "1.089808029", + "1.0924156091", + "1.0891838671", + "1.0921572488", + "1.0872586439", + "1.0876436792", + "1.0818287684", + "1.0738675788", + "1.0154454008", + "1.0209578008", + "1.0152169675", + "0.9873706969", + "0.993892441", + "1.0229944382", + "0.9969175514", + "0.9949015238", + "1.0156559294", + "1.0133160347", + "0.9965742072", + "1.0219249788", + "1.0239997686", + "1.0226688754", + "1.0370600929", + "1.0387822548", + "1.0387822548", + "1.0454278375", + "1.0454278375", + "1.0454278375", + "1.0454278375", + "1.0454278375", + "1.0454278375", + "1.0454278375", + "1.0454278375", + "1.0413484748", + "1.041694212", + "1.0352625044", + "1.045754979", + "1.0448497371", + "1.0409515675", + "1.0392088939", + "1.0405274637", + "1.0370255832", + "1.0319478349", + "1.0352929605", + "1.0407387273", + "1.0362005356", + "1.0212005795", + "1.0295716944", + "1.0242963092", + "1.0404442502", + "1.035746961", + "1.0398805303", + "1.0178408197", + "1.0124406359", + "1.026506991", + "1.0371674", + "1.053964443", + "1.0363741528", + "1.0263790343", + "1.0250612167", + "1.0058108368", + "1.0186893258", + "1.0775617708", + "1.0724098591", + "1.1393061164", + "1.1054668604", + "1.0426582196", + "1.0463844764", + "1.0491179435", + "1.042013862", + "1.042013862", + "1.0233899598", + "1.0262941061", + "1.0181935894", + "1.0537192881", + "0.9904967386", + "0.9684058252", + "0.9862701815", + "0.9729991862", + "0.9734247786", + "1.0916764922", + "1.098866943", + "1.1203079559", + "0.9249042402", + "1.0946531935", + "1.1013284276", + "1.0859653353", + "1.1055993405", + "1.0947864265", + "1.0998529128", + "1.0913566352", + "1.0844065301", + "1.075276833", + "1.0759349534", + "1.0948488766", + "1.0679674327", + "1.0500032222", + "1.1438911631", + "1.1452650368", + "1.1145766245", + "1.1721563151", + "1.1097349026", + "1.1152288454", + "1.1122678203", + "1.1369748054", + "1.1261523566", + "1.0343092846", + "1.0053991951", + "0.9665881351", + "0.9444868419", + "0.9358450356", + "0.9307248445", + "0.9675964702", + "0.9700915961", + "0.9419035272", + "0.9302655733", + "0.9338520823", + "1.0028051931", + "1.0095135752", + "0.9791426286", + "1.1030607018", + "1.0975458064", + "1.0998868576", + "1.0576099314", + "1.0537559519", + "1.0916625256", + "1.0834857113", + "1.0522436888", + "1.0538030475", + "1.0718230412", + "1.0285182465", + "1.0176821175", + "1.01884267", + "1.0523290114", + "1.0405054587", + "1.0218786015", + "1.0408672238", + "1.0221992251", + "1.0360141673", + "1.0302315963", + "1.0291632143", + "1.049721666", + "1.0455091186", + "1.0283900732", + "1.0626184472", + "1.0473842055", + "1.0524965145", + "1.051889829", + "1.0162881986", + "1.0122679904", + "0.9968006388", + "1.015147144", + "1.0120807692", + "0.9863891754", + "0.9693764275", + "0.9640687766", + "0.9688105612", + "0.9679519505", + "1.0007179104", + "0.9997372486", + "1.0237770462", + "1.0016680192", + "0.9621600272", + "0.965324438", + "0.99038633", + "0.9866774459", + "0.9624268292", + "0.9549694793", + "0.9573227386", + "0.9665002735", + "0.8922661766", + "0.9348692774", + "0.9191655067", + "0.9130037435", + "0.9067234987", + "0.8946208811", + "0.8977912205", + "0.9399633099", + "1.3743551411", + "1.4591333402", + "1.3716687651", + "1.356851053", + "1.3351784202", + "0.8888560791", + "0.9076604851", + "0.9575933502", + "0.9192325982", + "0.9344698012", + "1.0480069388", + "1.0017775459", + "1.0234292201", + "0.982095874", + "0.8954341855", + "0.9078165284", + "0.9143075996", + "0.9747341364", + "0.9659346038", + "0.9640158728", + "0.9900181539", + "0.9873257183", + "0.9785576627", + "1.0100782863", + "1.0181617508", + "1.0023504776", + "0.9757322278", + "0.9703866547", + "0.9757973306", + "0.9645041894", + "0.9094732946", + "0.9145581165", + "0.913802893", + "0.9606144775", + "0.9160441981", + "0.8984959997", + "0.9759208059", + "0.9291881661", + "0.9042707036", + "0.9173061948", + "0.8879216812", + "0.853135323", + "0.9372233588", + "0.9395771452", + "0.9443543549", + "0.9496999529", + "0.9153989271", + "0.9760546764", + "0.9828907918", + "0.9794017893", + "0.9920668547", + "0.9781508119", + "0.9579349057", + "0.949334137", + "0.9959860052", + "1.0152642779", + "1.0659432978", + "0.9088656816", + "0.8780383875", + "0.9710441014", + "0.9700274015", + "0.9572483258", + "0.9141730387", + "0.9789963529", + "0.9699396007", + "0.972591863", + "1.0037311683", + "0.9453900351", + "0.9306563323", + "0.912281204", + "0.9405968427", + "0.9121039174", + "0.9672498347", + "0.9982432347", + "1.0208760825", + "0.9775599055", + "0.948906117", + "0.9691530137", + "0.9489066253", + "0.9352926504", + "0.9000375795", + "0.934987139", + "0.8660766631", + "0.8833420341", + "0.9661507451", + "0.9545160843", + "0.951617658", + "0.9617719652", + "0.9701348507", + "0.9594574895", + "0.9713980571", + "0.9598645996", + "0.957403093", + "0.9258139614", + "0.9318088672", + "0.9380668644", + "0.925221319", + "0.9587599559", + "0.8909891676", + "0.9494871079", + "0.9466318753", + "0.9368724078", + "0.9360975314", + "0.9622396562", + "0.9388484194", + "0.9085422814", + "0.823214182", + "0.8350187268", + "0.8360360027", + "0.7800592255", + "0.792186146", + "0.788897744", + "0.7702235449", + "0.7789054966", + "0.7748647097", + "0.7649015599", + "0.7907025865", + "0.7873912498", + "0.7507619715", + "0.7693004042", + "0.7270591452", + "0.729738084", + "0.7437284993", + "0.745229609", + "0.7318997639", + "0.7213783698", + "0.7481328021", + "0.734055855", + "0.6940495579", + "0.7014130935", + "0.870980657", + "0.6913141482", + "0.6958585025", + "0.6994622764", + "0.6954096682", + "0.6625276415", + "0.6923363163", + "0.7123955585", + "0.7143882822", + "0.7124706828", + "0.6957875938", + "0.6946276642", + "0.6603912544", + "0.6626670559", + "0.7885504494", + "0.7997448055", + "0.6860315812", + "0.691688993", + "0.6817603014", + "0.6458921208", + "0.6715005177", + "0.6622354032", + "0.6543706554", + "0.653516725", + "0.6610412809", + "0.6550338071", + "0.674102726", + "0.6680264092", + "0.67974876", + "0.6745159842", + "0.661299735", + "0.6493660333", + "0.6590267592", + "0.6548732749", + "0.6607755775", + "0.6528272327", + "0.628266697", + "0.6376796635", + "0.6315112481", + "0.6595424357", + "0.6572374881", + "0.5192928884", + "0.5331240112", + "0.5458161219", + "0.5767350946", + "0.5803589935", + "0.5691458503", + "0.5851962482", + "0.5657461604", + "0.5621694593", + "0.5790865182", + "0.56888751", + "0.5734462818", + "0.5814993035", + "0.567284467", + "0.5591092604", + "0.6192002399", + "0.5956624666", + "0.5959794926", + "0.5966229065", + "0.5911303118", + "0.5812356877", + "0.6414127641", + "0.6123216312", + "0.5345643972", + "0.5533794166", + "0.5731451748", + "0.5492548651", + "0.5309582398", + "0.5124283539", + "0.5287335454", + "0.5360899456", + "0.5184881226", + "0.5739961884", + "0.5801674455", + "0.583885103", + "0.6191471946", + "0.5731588126", + "0.5988346203", + "0.4837983573", + "0.4666799192", + "0.5697076853", + "0.5806963739", + "0.5147676644", + "0.5160445408", + "0.4742276929", + "0.4906468639", + "0.0", + "0.1385542566", + "0.1259787954", + "0.1484534551", + "0.5915534656", + "0.5978528012", + "0.5778544958", + "0.5903829417", + "0.588908944", + "0.5573107342", + "0.5671098737", + "0.6160384237", + "0.6514625868", + "0.6262754075", + "0.6069636053", + "0.5558175301", + "0.5676161308", + "0.5673095806", + "0.598125476", + "0.5984831718", + "0.5312006507", + "0.6689732571", + "0.6735568983", + "0.6833004743", + "0.6630620184", + "0.6247573382", + "0.694150835", + "0.6751145115", + "0.6799761997", + "0.6167643533", + "0.6484764667", + "0.6571125254", + "0.6687702796", + "0.6512057401", + "0.6378414245", + "0.6022084429", + "0.6012940705", + "0.6077607603", + "0.683599043", + "0.6637155553", + "0.7390984537", + "0.6931089006", + "0.6474513239", + "0.6536563608", + "0.6585966502", + "0.6532879915", + "0.6474863905", + "0.6749266595", + "0.6570701957", + "0.6490207021", + "0.6400077351", + "0.6619452121", + "0.6564433673", + "0.6580772593", + "0.6220271682", + "0.6241836396", + "0.5973094267", + "0.6805731172", + "0.6563113409", + "0.6416695273", + "0.6219381814", + "0.7576618721", + "0.7609216804", + "0.7888286617", + "0.7434644827", + "0.7475677987", + "0.7616162782", + "0.775332744", + "0.7989719652", + "0.7401672735", + "0.7181811056", + "0.7467873381", + "0.7150379935", + "0.7183518188", + "0.7313190656", + "0.7116737007", + "0.7189360449", + "0.704571192", + "0.7004827631", + "0.7822263958", + "0.7744178614", + "0.7287370519", + "0.7495040146", + "0.7461847439", + "0.7993941034", + "0.7267924577", + "0.7110036808", + "0.7286362077", + "0.7294593234", + "0.7308891856", + "0.7563101556", + "0.768234805", + "0.8266988252", + "0.8300852194", + "0.8131308969", + "0.7983630346", + "0.7791369017", + "0.7482710224", + "1.1095530842", + "1.1339935607", + "1.0978382822", + "1.1084888869", + "1.0857333524", + "1.0719817315", + "1.162330117", + "1.1911743021", + "1.1922922243", + "1.1165613597", + "1.1140934844", + "1.1141602", + "1.1079503058", + "1.1260375144", + "1.1020546586", + "1.0779068281", + "1.0407037182", + "1.0488467158", + "1.0270281372", + "1.0477597867", + "1.0060442164", + "1.0205317493", + "1.0221841755", + "1.0278000165", + "1.0203072011", + "1.019841802", + "1.0171026541", + "1.007405027", + "1.0251122493", + "1.0052586137", + "1.0077057646", + "1.0034459302", + "1.0181043772", + "1.0372044793", + "0.9805023606", + "1.0029031348", + "1.0109407656", + "1.010082856", + "0.9933395106", + "0.9825616711", + "0.9826928288", + "0.9873854764", + "0.9907022502", + "1.0234228622", + "1.0546249507", + "1.0495529728", + "0.9734947023", + "0.9743859873", + "0.9696376756", + "0.9756869257", + "0.8967186077", + "0.7936752906", + "0.8073078036", + "1.0465349053", + "1.2543855311", + "1.0080260942", + "1.0685413797", + "1.0699333287", + "1.0457967213", + "1.0534752245", + "1.0761956155", + "1.0659971476", + "1.0834062436", + "1.084560305", + "1.081122975", + "1.0807840166", + "1.1075684889", + "1.0775259712", + "1.0811652497", + "1.0849898312", + "1.085209365", + "1.0485620006", + "1.0534383158", + "1.0744843559", + "1.0549365429", + "1.06227729", + "1.0141887046", + "1.0066367989", + "1.0373493799", + "1.0335251329", + "1.0458742251", + "1.0507318609", + "1.0453765066", + "1.0449399364", + "1.0359910652", + "1.0480074854", + "1.0256567441", + "1.0416052627", + "1.0503180018", + "1.0460327199", + "1.0542302863", + "1.0694865078", + "1.0649558553", + "1.0060501513", + "1.0438006615", + "1.0343020581", + "0.9963961294", + "1.2665714569", + "1.2992081147", + "1.2646846754", + "1.2733635289", + "1.2472539851", + "1.0610441452", + "0.9143143733", + "0.906346948", + "0.9596820591", + "0.9229541444", + "0.9279946355", + "0.9257640374", + "0.9134176167", + "0.9183602178", + "0.8716099333", + "0.9269054094", + "0.9212676581", + "0.966753081", + "0.9448482592", + "0.937203023", + "0.924533149", + "0.8374220137", + "0.8413396298", + "0.949494355", + "0.9320503587", + "0.9359976712", + "0.9308100202", + "0.9033938874", + "0.9924692524", + "0.9400388185", + "0.9400851934", + "1.0371340633", + "1.0676810261", + "1.0230928398", + "1.0300852112", + "1.0028488664", + "1.0082366646", + "1.0074037867", + "0.9995704711", + "0.9421910892", + "1.0908048415", + "1.144969809", + "1.1119927323", + "1.1011911314", + "1.108497046", + "1.0490922074", + "1.0616930383", + "1.0687506513", + "1.063988619", + "1.1133516605", + "1.1193385327", + "1.1287373818", + "1.140828762", + "1.076004802", + "1.1177935231", + "1.1159251068", + "1.0423395446", + "1.0404672736", + "1.0686630473", + "1.0617664164", + "1.1135851677", + "1.0172610565", + "0.9625903981", + "0.980404129", + "0.9431487332", + "0.9755484607", + "1.0587792215", + "1.0720215777", + "1.0869378051", + "1.1021742123", + "1.0159428078", + "0.9483318569", + "1.0087145748", + "1.0814188691", + "0.9272533639", + "0.956111966", + "0.9622342146", + "1.0190235865", + "0.9723537046", + "0.9788673504", + "0.9836496964", + "0.9648983357", + "0.9911448826", + "1.0584225846", + "1.0649767488", + "1.0927622638", + "1.105765254", + "1.102385554", + "0.9810224736", + "1.0080667807", + "0.9713558252", + "0.9767730437", + "1.0287576556", + "1.0610708769", + "1.0530062553", + "1.0614217187", + "1.048516376", + "1.03562329", + "1.040169778", + "1.0937950699", + "1.1491808913", + "1.2459382125", + "1.1590626304", + "1.1584323255", + "1.1862580772", + "1.1236457175", + "1.1904918368", + "1.1855379103", + "1.1505128096", + "1.1597762753", + "1.0550623942", + "1.3466194595", + "1.2727741508", + "1.2819631712", + "1.2094727989", + "1.2217636405", + "1.211378541", + "1.3135821501", + "1.2408137879", + "1.2790014028", + "1.273084277", + "1.250968759", + "1.1801959725", + "1.182940816", + "1.2275993661", + "1.2213601245", + "1.2259489251", + "1.1913473373", + "1.1829283128", + "1.1748914714", + "1.2345405929", + "1.193369237", + "1.2010379394", + "1.1715587682", + "1.1243056879", + "1.2278683402", + "1.1659524513", + "1.1590858066", + "1.1793140385", + "1.2554582961", + "1.2677298547", + "1.2763187179", + "1.2714309493", + "1.2652262229", + "1.2550664281", + "1.2540845393", + "1.2474314574", + "1.3656263349", + "1.34650961", + "1.2204447299", + "1.2697300729", + "1.269657391", + "1.2632981626", + "1.2658109331", + "1.3318934332", + "1.3264434108", + "1.2813218714", + "1.2672865278", + "1.2646336257", + "1.2531375417", + "1.2718709354", + "1.2403473112", + "1.2313031609", + "1.227141601", + "1.2427022949", + "1.2381726058", + "1.2290706581", + "1.2356405725", + "1.2503158863", + "1.2650664588", + "1.2740008256", + "1.3004655133", + "1.2519961208", + "1.2760078885", + "1.2869329121", + "1.2306212667", + "1.2849410058", + "1.2598731535", + "1.2358105644", + "1.2353117936", + "1.2430051107", + "1.236970001", + "1.2101020779", + "1.218047136", + "1.2211893454", + "1.1924696299" + ] + }, + "essential_compounds": [ + "12ppd_S", + "15dap", + "2ddglcn", + "3hpppn", + "4abut", + "4hbz", + "4hoxpacd", + "7dhcdchol", + "7ocholate", + "C02528", + "Lcyst", + "ac", + "acac", + "acald", + "acgal", + "acgam", + "acnam", + "adn", + "adocbl", + "akg", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arg_L", + "asn_L", + "aso3", + "aso4", + "asp_L", + "btn", + "but", + "butso3", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cgly", + "chol", + "cholate", + "cinnm", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cynt", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "ddca", + "dgsn", + "dhcinnm", + "dhpppn", + "din", + "dms", + "dmso", + "drib", + "duri", + "etha", + "ethso3", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "fuc1p_L", + "fuc_L", + "fum", + "g6p", + "gal", + "galct_D", + "galctn_D", + "galt", + "galur", + "gbbtn", + "gcald", + "glc_D", + "glcn", + "glcr", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glyclt", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gsn", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hexs", + "hg2", + "his_L", + "hxan", + "idon_L", + "ile_L", + "indole", + "ins", + "isetac", + "k", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man6p", + "man", + "mantr", + "melib", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mops", + "mso3", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "pac", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppa", + "ppi", + "pppn", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "rib_D", + "rmn", + "salcn", + "sbt_D", + "sel", + "selni", + "ser_D", + "ser_L", + "so4", + "spmd", + "succ", + "sucr", + "sulfac", + "taur", + "thm", + "thr_L", + "thymd", + "tma", + "tmao", + "tre", + "trp_L", + "tsul", + "ttdca", + "tym", + "tyr_L", + "ura", + "urea", + "uri", + "val_L", + "xan", + "xtsn", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_439.json b/agents/agora/agent_439.json new file mode 100644 index 0000000000000000000000000000000000000000..92b1c5cd107a2539e9b1c4328b8c4e9fe2576b7e --- /dev/null +++ b/agents/agora/agent_439.json @@ -0,0 +1,1024 @@ +{ + "id": 439, + "name": "Granulicatella_elegans_ATCC_700633", + "N_R": 1099, + "taxonomy": { + "k": 439, + "tax_distance": [ + "2.3910994834", + "1.9732216161", + "1.966522387", + "2.1931050941", + "1.8745050202", + "1.9196337071", + "1.9009284093", + "1.897985815", + "1.9619674133", + "1.8803233214", + "1.8973880248", + "2.0055103386", + "1.9785281169", + "2.2065420748", + "2.2548988919", + "2.2852314025", + "2.1655810046", + "2.1745051214", + "2.209979597", + "1.742963913", + "1.6782929363", + "1.4277716776", + "1.3611212452", + "1.2396415685", + "1.0654622897", + "1.0596510816", + "1.0562965102", + "1.0586575646", + "1.0428912746", + "1.0342055117", + "1.0366564178", + "1.1382423539", + "1.1477801567", + "1.1441462467", + "1.1598423153", + "1.1283407353", + "1.1510866794", + "1.1693925909", + "1.1503606279", + "1.4433012869", + "1.1881429082", + "1.1067818522", + "1.1135471584", + "1.1161547385", + "1.1129229965", + "1.1158963782", + "1.1109977733", + "1.1113828086", + "1.1055678978", + "1.0976067082", + "1.0391845302", + "1.0446969302", + "1.0389560969", + "1.0111098263", + "1.0176315704", + "1.0467335676", + "1.0206566808", + "1.0186406532", + "1.0393950588", + "1.0370551641", + "1.0203133366", + "1.0456641082", + "1.047738898", + "1.0464080048", + "1.0607992223", + "1.0625213842", + "1.0625213842", + "1.0691669669", + "1.0691669669", + "1.0691669669", + "1.0691669669", + "1.0691669669", + "1.0691669669", + "1.0691669669", + "1.0691669669", + "1.0650876042", + "1.0654333414", + "1.0590016338", + "1.0694941084", + "1.0685888665", + "1.0646906969", + "1.0629480233", + "1.0642665931", + "1.0607647126", + "1.0556869643", + "1.0590320899", + "1.0644778567", + "1.059939665", + "1.0449397089", + "1.0533108238", + "1.0480354386", + "1.0641833796", + "1.0594860904", + "1.0636196597", + "1.0415799491", + "1.0361797653", + "1.0502461204", + "1.0609065294", + "1.0777035724", + "1.0601132822", + "1.0501181637", + "1.0488003461", + "1.0295499662", + "1.0424284552", + "1.1013009002", + "1.0961489885", + "1.1630452458", + "1.1292059898", + "1.066397349", + "1.0701236058", + "1.0728570729", + "1.0657529914", + "1.0657529914", + "1.0471290892", + "1.0500332355", + "1.0419327188", + "1.0774584175", + "1.014235868", + "0.9921449546", + "1.0100093109", + "0.9967383156", + "0.997163908", + "1.1154156216", + "1.1226060724", + "1.1440470853", + "0.9486433696", + "1.1183923229", + "1.125067557", + "1.1097044647", + "1.1293384699", + "1.1185255559", + "1.1235920422", + "1.1150957646", + "1.1081456595", + "1.0990159624", + "1.0996740828", + "1.118588006", + "1.0917065621", + "1.0737423516", + "1.1676302925", + "1.1690041662", + "1.1383157539", + "1.1958954445", + "1.133474032", + "1.1389679748", + "1.1360069497", + "1.1607139348", + "1.149891486", + "1.058048414", + "1.0291383245", + "0.9903272645", + "0.9682259713", + "0.959584165", + "0.9544639739", + "0.9913355996", + "0.9938307255", + "0.9656426566", + "0.9540047027", + "0.9575912117", + "1.0265443225", + "1.0332527046", + "1.002881758", + "1.1267998312", + "1.1212849358", + "1.123625987", + "1.0813490608", + "1.0774950813", + "1.115401655", + "1.1072248407", + "1.0759828182", + "1.0775421769", + "1.0955621706", + "1.0522573759", + "1.0414212469", + "1.0425817994", + "1.0760681408", + "1.0642445881", + "1.0456177309", + "1.0646063532", + "1.0459383545", + "1.0597532967", + "1.0539707257", + "1.0529023437", + "1.0734607954", + "1.069248248", + "1.0521292026", + "1.0863575766", + "1.0711233349", + "1.0762356439", + "1.0756289584", + "1.040027328", + "1.0360071198", + "1.0205397682", + "1.0388862734", + "1.0358198986", + "1.0101283048", + "0.9931155569", + "0.987807906", + "0.9925496906", + "0.9916910799", + "1.0244570398", + "1.023476378", + "1.0475161756", + "1.0254071486", + "0.9858991566", + "0.9890635674", + "1.0141254594", + "1.0104165753", + "0.9861659586", + "0.9787086087", + "0.981061868", + "0.9902394029", + "0.916005306", + "0.9586084068", + "0.9429046361", + "0.9367428729", + "0.9304626281", + "0.9183600105", + "0.9215303499", + "0.9637024393", + "1.3980942705", + "1.4828724696", + "1.3954078945", + "1.3805901824", + "1.3589175496", + "0.9125952085", + "0.9313996145", + "0.9813324796", + "0.9429717276", + "0.9582089306", + "1.0717460682", + "1.0255166753", + "1.0471683495", + "1.0058350034", + "0.9191733149", + "0.9315556578", + "0.938046729", + "0.9984732658", + "0.9896737332", + "0.9877550022", + "1.0137572833", + "1.0110648477", + "1.0022967921", + "1.0338174157", + "1.0419008802", + "1.026089607", + "0.9994713572", + "0.9941257841", + "0.99953646", + "0.9882433188", + "0.933212424", + "0.9382972459", + "0.9375420224", + "0.9843536069", + "0.9397833275", + "0.9222351291", + "0.9996599353", + "0.9529272955", + "0.928009833", + "0.9410453242", + "0.9116608106", + "0.8768744524", + "0.9609624882", + "0.9633162746", + "0.9680934843", + "0.9734390823", + "0.9391380565", + "0.9997938058", + "1.0066299212", + "1.0031409187", + "1.0158059841", + "1.0018899413", + "0.9816740351", + "0.9730732664", + "1.0197251346", + "1.0390034073", + "1.0896824272", + "0.932604811", + "0.9017775169", + "0.9947832308", + "0.9937665309", + "0.9809874552", + "0.9379121681", + "1.0027354823", + "0.9936787301", + "0.9963309924", + "1.0274702977", + "0.9691291645", + "0.9543954617", + "0.9360203334", + "0.9643359721", + "0.9358430468", + "0.9909889641", + "1.0219823641", + "1.0446152119", + "1.0012990349", + "0.9726452464", + "0.9928921431", + "0.9726457547", + "0.9590317798", + "0.9237767089", + "0.9587262684", + "0.8898157925", + "0.9070811635", + "0.9898898745", + "0.9782552137", + "0.9753567874", + "0.9855110946", + "0.9938739801", + "0.9831966189", + "0.9951371865", + "0.983603729", + "0.9811422224", + "0.9495530908", + "0.9555479966", + "0.9618059938", + "0.9489604484", + "0.9824990853", + "0.914728297", + "0.9732262373", + "0.9703710047", + "0.9606115372", + "0.9598366608", + "0.9859787856", + "0.9625875488", + "0.9322814108", + "0.8469533114", + "0.8587578562", + "0.8597751321", + "0.8037983549", + "0.8159252754", + "0.8126368734", + "0.7939626743", + "0.802644626", + "0.7986038391", + "0.7886406893", + "0.8144417159", + "0.8111303792", + "0.7745011009", + "0.7930395336", + "0.7507982746", + "0.7534772134", + "0.7674676287", + "0.7689687384", + "0.7556388933", + "0.7451174992", + "0.7718719315", + "0.7577949844", + "0.7177886873", + "0.7251522229", + "0.8947197864", + "0.7150532776", + "0.7195976319", + "0.7232014058", + "0.7191487976", + "0.6862667709", + "0.7160754457", + "0.7361346879", + "0.7381274116", + "0.7362098122", + "0.7195267232", + "0.7183667936", + "0.6841303838", + "0.6864061853", + "0.8122895788", + "0.8234839349", + "0.7097707106", + "0.7154281224", + "0.7054994308", + "0.6696312502", + "0.6952396471", + "0.6859745326", + "0.6781097848", + "0.6772558544", + "0.6847804103", + "0.6787729365", + "0.6978418554", + "0.6917655386", + "0.7034878894", + "0.6982551136", + "0.6850388644", + "0.6731051627", + "0.6827658886", + "0.6786124043", + "0.6845147069", + "0.6765663621", + "0.6520058264", + "0.6614187929", + "0.6552503775", + "0.6832815651", + "0.6809766175", + "0.5430320178", + "0.5568631406", + "0.5695552513", + "0.600474224", + "0.6040981229", + "0.5928849797", + "0.6089353776", + "0.5894852898", + "0.5859085887", + "0.6028256476", + "0.5926266394", + "0.5971854112", + "0.6052384329", + "0.5910235964", + "0.5828483898", + "0.6429393693", + "0.619401596", + "0.619718622", + "0.6203620359", + "0.6148694412", + "0.6049748171", + "0.6651518935", + "0.6360607606", + "0.5583035266", + "0.577118546", + "0.5968843042", + "0.5729939945", + "0.5546973692", + "0.5361674833", + "0.5524726748", + "0.559829075", + "0.542227252", + "0.5977353178", + "0.6039065749", + "0.6076242324", + "0.642886324", + "0.596897942", + "0.6225737497", + "0.5075374867", + "0.4904190486", + "0.5934468147", + "0.6044355033", + "0.5385067938", + "0.5397836702", + "0.4979668223", + "0.5143859933", + "0.1385542566", + "0.0", + "0.0753561668", + "0.1721925845", + "0.615292595", + "0.6215919306", + "0.6015936252", + "0.6141220711", + "0.6126480734", + "0.5810498636", + "0.5908490031", + "0.6397775531", + "0.6752017162", + "0.6500145369", + "0.6307027347", + "0.5795566595", + "0.5913552602", + "0.59104871", + "0.6218646054", + "0.6222223012", + "0.5549397801", + "0.6927123865", + "0.6972960277", + "0.7070396037", + "0.6868011478", + "0.6484964676", + "0.7178899644", + "0.6988536409", + "0.7037153291", + "0.6405034827", + "0.6722155961", + "0.6808516548", + "0.692509409", + "0.6749448695", + "0.6615805539", + "0.6259475723", + "0.6250331999", + "0.6314998897", + "0.7073381724", + "0.6874546847", + "0.7628375831", + "0.71684803", + "0.6711904533", + "0.6773954902", + "0.6823357796", + "0.6770271209", + "0.6712255199", + "0.6986657889", + "0.6808093251", + "0.6727598315", + "0.6637468645", + "0.6856843415", + "0.6801824967", + "0.6818163887", + "0.6457662976", + "0.647922769", + "0.6210485561", + "0.7043122466", + "0.6800504703", + "0.6654086567", + "0.6456773108", + "0.7814010015", + "0.7846608098", + "0.8125677911", + "0.7672036121", + "0.7713069281", + "0.7853554076", + "0.7990718734", + "0.8227110946", + "0.7639064029", + "0.741920235", + "0.7705264675", + "0.7387771229", + "0.7420909482", + "0.755058195", + "0.7354128301", + "0.7426751743", + "0.7283103214", + "0.7242218925", + "0.8059655252", + "0.7981569908", + "0.7524761813", + "0.773243144", + "0.7699238733", + "0.8231332328", + "0.7505315871", + "0.7347428102", + "0.7523753371", + "0.7531984528", + "0.754628315", + "0.780049285", + "0.7919739344", + "0.8504379546", + "0.8538243488", + "0.8368700263", + "0.822102164", + "0.8028760311", + "0.7720101518", + "1.1332922136", + "1.1577326901", + "1.1215774116", + "1.1322280163", + "1.1094724818", + "1.0957208609", + "1.1860692464", + "1.2149134315", + "1.2160313537", + "1.1403004891", + "1.1378326138", + "1.1378993294", + "1.1316894352", + "1.1497766438", + "1.125793788", + "1.1016459575", + "1.0644428476", + "1.0725858452", + "1.0507672666", + "1.0714989161", + "1.0297833458", + "1.0442708787", + "1.0459233049", + "1.0515391459", + "1.0440463305", + "1.0435809314", + "1.0408417835", + "1.0311441564", + "1.0488513787", + "1.0289977431", + "1.031444894", + "1.0271850596", + "1.0418435066", + "1.0609436087", + "1.00424149", + "1.0266422642", + "1.034679895", + "1.0338219854", + "1.01707864", + "1.0063008005", + "1.0064319582", + "1.0111246058", + "1.0144413796", + "1.0471619916", + "1.0783640801", + "1.0732921022", + "0.9972338317", + "0.9981251167", + "0.993376805", + "0.9994260551", + "0.9204577371", + "0.81741442", + "0.831046933", + "1.0702740347", + "1.2781246605", + "1.0317652236", + "1.0922805091", + "1.0936724581", + "1.0695358507", + "1.0772143539", + "1.0999347449", + "1.089736277", + "1.107145373", + "1.1082994344", + "1.1048621044", + "1.104523146", + "1.1313076183", + "1.1012651006", + "1.1049043791", + "1.1087289606", + "1.1089484944", + "1.07230113", + "1.0771774452", + "1.0982234853", + "1.0786756723", + "1.0860164194", + "1.037927834", + "1.0303759283", + "1.0610885093", + "1.0572642623", + "1.0696133545", + "1.0744709903", + "1.069115636", + "1.0686790658", + "1.0597301946", + "1.0717466148", + "1.0493958735", + "1.0653443921", + "1.0740571312", + "1.0697718493", + "1.0779694157", + "1.0932256372", + "1.0886949847", + "1.0297892807", + "1.0675397909", + "1.0580411875", + "1.0201352588", + "1.2903105863", + "1.3229472441", + "1.2884238048", + "1.2971026583", + "1.2709931145", + "1.0847832746", + "0.9380535027", + "0.9300860774", + "0.9834211885", + "0.9466932738", + "0.9517337649", + "0.9495031668", + "0.9371567461", + "0.9420993472", + "0.8953490627", + "0.9506445388", + "0.9450067875", + "0.9904922104", + "0.9685873886", + "0.9609421524", + "0.9482722784", + "0.8611611431", + "0.8650787592", + "0.9732334844", + "0.9557894881", + "0.9597368006", + "0.9545491496", + "0.9271330168", + "1.0162083818", + "0.9637779479", + "0.9638243228", + "1.0608731927", + "1.0914201555", + "1.0468319692", + "1.0538243406", + "1.0265879958", + "1.031975794", + "1.0311429161", + "1.0233096005", + "0.9659302186", + "1.1145439709", + "1.1687089384", + "1.1357318617", + "1.1249302608", + "1.1322361754", + "1.0728313368", + "1.0854321677", + "1.0924897807", + "1.0877277484", + "1.1370907899", + "1.1430776621", + "1.1524765112", + "1.1645678914", + "1.0997439314", + "1.1415326525", + "1.1396642362", + "1.066078674", + "1.064206403", + "1.0924021767", + "1.0855055458", + "1.1373242971", + "1.0410001859", + "0.9863295275", + "1.0041432584", + "0.9668878626", + "0.9992875901", + "1.0825183509", + "1.0957607071", + "1.1106769345", + "1.1259133417", + "1.0396819372", + "0.9720709863", + "1.0324537042", + "1.1051579985", + "0.9509924933", + "0.9798510954", + "0.985973344", + "1.0427627159", + "0.996092834", + "1.0026064798", + "1.0073888258", + "0.9886374651", + "1.014884012", + "1.082161714", + "1.0887158782", + "1.1165013932", + "1.1295043834", + "1.1261246834", + "1.004761603", + "1.0318059101", + "0.9950949546", + "1.0005121731", + "1.052496785", + "1.0848100063", + "1.0767453847", + "1.0851608481", + "1.0722555054", + "1.0593624194", + "1.0639089074", + "1.1175341993", + "1.1729200207", + "1.2696773419", + "1.1828017598", + "1.1821714549", + "1.2099972066", + "1.1473848469", + "1.2142309662", + "1.2092770397", + "1.174251939", + "1.1835154047", + "1.0788015236", + "1.3703585889", + "1.2965132802", + "1.3057023006", + "1.2332119283", + "1.2455027699", + "1.2351176704", + "1.3373212795", + "1.2645529173", + "1.3027405322", + "1.2968234064", + "1.2747078884", + "1.2039351019", + "1.2066799454", + "1.2513384955", + "1.2450992539", + "1.2496880545", + "1.2150864667", + "1.2066674422", + "1.1986306008", + "1.2582797223", + "1.2171083664", + "1.2247770688", + "1.1952978976", + "1.1480448173", + "1.2516074696", + "1.1896915807", + "1.182824936", + "1.2030531679", + "1.2791974255", + "1.2914689841", + "1.3000578473", + "1.2951700787", + "1.2889653523", + "1.2788055575", + "1.2778236687", + "1.2711705868", + "1.3893654643", + "1.3702487394", + "1.2441838593", + "1.2934692023", + "1.2933965204", + "1.287037292", + "1.2895500625", + "1.3556325626", + "1.3501825402", + "1.3050610008", + "1.2910256572", + "1.2883727551", + "1.2768766711", + "1.2956100648", + "1.2640864406", + "1.2550422903", + "1.2508807304", + "1.2664414243", + "1.2619117352", + "1.2528097875", + "1.2593797019", + "1.2740550157", + "1.2888055882", + "1.297739955", + "1.3242046427", + "1.2757352502", + "1.2997470179", + "1.3106720415", + "1.2543603961", + "1.3086801352", + "1.2836122829", + "1.2595496938", + "1.259050923", + "1.2667442401", + "1.2607091304", + "1.2338412073", + "1.2417862654", + "1.2449284748", + "1.2162087593" + ] + }, + "essential_compounds": [ + "15dap", + "26dap_M", + "2hyoxplac", + "34dhpha", + "34dhphe", + "3hphac", + "3mop", + "4abut", + "4abz", + "4hbz", + "4hoxpacd", + "5htrp", + "5mta", + "HC00319", + "Lcyst", + "ac", + "acac", + "acald", + "acgam", + "adn", + "adocbl", + "akg", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_L", + "arbt", + "arg_L", + "asn_L", + "aso3", + "aso4", + "asp_L", + "but", + "butso3", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dgsn", + "din", + "dms", + "dmso", + "dopa", + "drib", + "duri", + "etha", + "ethso3", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "fuc1p_L", + "fum", + "g6p", + "gal", + "galctn_D", + "galt", + "galur", + "gam", + "gbbtn", + "gcald", + "glc_D", + "glcn", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gsn", + "gthrd", + "gua", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hexs", + "hg2", + "his_L", + "hista", + "hxan", + "ile_L", + "indole", + "ins", + "isetac", + "k", + "lac_D", + "lac_L", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man6p", + "man", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mops", + "mso3", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppa", + "ppi", + "pppn", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "rib_D", + "rmn", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "so4", + "spmd", + "srtn", + "succ", + "sucr", + "sulfac", + "taur", + "thm", + "thr_L", + "thymd", + "tma", + "tmao", + "tre", + "trp_L", + "trypta", + "tsul", + "ttdca", + "tym", + "tyr_L", + "ura", + "urea", + "uri", + "val_L", + "xtsn", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_440.json b/agents/agora/agent_440.json new file mode 100644 index 0000000000000000000000000000000000000000..d75ce605b343e6eec6a0460a19b41bf090b5bcae --- /dev/null +++ b/agents/agora/agent_440.json @@ -0,0 +1,971 @@ +{ + "id": 440, + "name": "Grimontia_hollisae_CIP_101886", + "N_R": 784, + "taxonomy": { + "k": 440, + "tax_distance": [ + "2.3785240222", + "1.9606461549", + "1.9539469258", + "2.1805296329", + "1.861929559", + "1.9070582459", + "1.8883529481", + "1.8854103538", + "1.9493919521", + "1.8677478602", + "1.8848125636", + "1.9929348774", + "1.9659526557", + "2.1939666136", + "2.2423234307", + "2.2726559413", + "2.1530055434", + "2.1619296602", + "2.1974041358", + "1.7303884518", + "1.6657174751", + "1.4151962164", + "1.348545784", + "1.2270661073", + "1.0528868285", + "1.0470756204", + "1.043721049", + "1.0460821034", + "1.0303158134", + "1.0216300505", + "1.0240809566", + "1.1256668927", + "1.1352046955", + "1.1315707855", + "1.1472668541", + "1.1157652741", + "1.1385112182", + "1.1568171297", + "1.1377851667", + "1.4307258257", + "1.175567447", + "1.094206391", + "1.1009716972", + "1.1035792773", + "1.1003475353", + "1.103320917", + "1.0984223121", + "1.0988073474", + "1.0929924366", + "1.085031247", + "1.026609069", + "1.032121469", + "1.0263806357", + "0.9985343651", + "1.0050561092", + "1.0341581064", + "1.0080812196", + "1.006065192", + "1.0268195976", + "1.0244797029", + "1.0077378754", + "1.033088647", + "1.0351634368", + "1.0338325436", + "1.0482237611", + "1.049945923", + "1.049945923", + "1.0565915057", + "1.0565915057", + "1.0565915057", + "1.0565915057", + "1.0565915057", + "1.0565915057", + "1.0565915057", + "1.0565915057", + "1.052512143", + "1.0528578802", + "1.0464261726", + "1.0569186472", + "1.0560134053", + "1.0521152357", + "1.0503725621", + "1.0516911319", + "1.0481892514", + "1.0431115031", + "1.0464566287", + "1.0519023955", + "1.0473642038", + "1.0323642477", + "1.0407353626", + "1.0354599774", + "1.0516079184", + "1.0469106292", + "1.0510441985", + "1.0290044879", + "1.0236043041", + "1.0376706592", + "1.0483310682", + "1.0651281112", + "1.047537821", + "1.0375427025", + "1.0362248849", + "1.016974505", + "1.029852994", + "1.088725439", + "1.0835735273", + "1.1504697846", + "1.1166305286", + "1.0538218878", + "1.0575481446", + "1.0602816117", + "1.0531775302", + "1.0531775302", + "1.034553628", + "1.0374577743", + "1.0293572576", + "1.0648829563", + "1.0016604068", + "0.9795694934", + "0.9974338497", + "0.9841628544", + "0.9845884468", + "1.1028401604", + "1.1100306112", + "1.1314716241", + "0.9360679084", + "1.1058168617", + "1.1124920958", + "1.0971290035", + "1.1167630087", + "1.1059500947", + "1.111016581", + "1.1025203034", + "1.0955701983", + "1.0864405012", + "1.0870986216", + "1.1060125448", + "1.0791311009", + "1.0611668904", + "1.1550548313", + "1.156428705", + "1.1257402927", + "1.1833199833", + "1.1208985708", + "1.1263925136", + "1.1234314885", + "1.1481384736", + "1.1373160248", + "1.0454729528", + "1.0165628633", + "0.9777518033", + "0.9556505101", + "0.9470087038", + "0.9418885127", + "0.9787601384", + "0.9812552643", + "0.9530671954", + "0.9414292415", + "0.9450157505", + "1.0139688613", + "1.0206772434", + "0.9903062968", + "1.11422437", + "1.1087094746", + "1.1110505258", + "1.0687735996", + "1.0649196201", + "1.1028261938", + "1.0946493795", + "1.063407357", + "1.0649667157", + "1.0829867094", + "1.0396819147", + "1.0288457857", + "1.0300063382", + "1.0634926796", + "1.0516691269", + "1.0330422697", + "1.052030892", + "1.0333628933", + "1.0471778355", + "1.0413952645", + "1.0403268825", + "1.0608853342", + "1.0566727868", + "1.0395537414", + "1.0737821154", + "1.0585478737", + "1.0636601827", + "1.0630534972", + "1.0274518668", + "1.0234316586", + "1.007964307", + "1.0263108122", + "1.0232444374", + "0.9975528436", + "0.9805400957", + "0.9752324448", + "0.9799742294", + "0.9791156187", + "1.0118815786", + "1.0109009168", + "1.0349407144", + "1.0128316874", + "0.9733236954", + "0.9764881062", + "1.0015499982", + "0.9978411141", + "0.9735904974", + "0.9661331475", + "0.9684864068", + "0.9776639417", + "0.9034298448", + "0.9460329456", + "0.9303291749", + "0.9241674117", + "0.9178871669", + "0.9057845493", + "0.9089548887", + "0.9511269781", + "1.3855188093", + "1.4702970084", + "1.3828324333", + "1.3680147212", + "1.3463420884", + "0.9000197473", + "0.9188241533", + "0.9687570184", + "0.9303962664", + "0.9456334694", + "1.059170607", + "1.0129412141", + "1.0345928883", + "0.9932595422", + "0.9065978537", + "0.9189801966", + "0.9254712678", + "0.9858978046", + "0.977098272", + "0.975179541", + "1.0011818221", + "0.9984893865", + "0.9897213309", + "1.0212419545", + "1.029325419", + "1.0135141458", + "0.986895896", + "0.9815503229", + "0.9869609988", + "0.9756678576", + "0.9206369628", + "0.9257217847", + "0.9249665612", + "0.9717781457", + "0.9272078663", + "0.9096596679", + "0.9870844741", + "0.9403518343", + "0.9154343718", + "0.928469863", + "0.8990853494", + "0.8642989912", + "0.948387027", + "0.9507408134", + "0.9555180231", + "0.9608636211", + "0.9265625953", + "0.9872183446", + "0.99405446", + "0.9905654575", + "1.0032305229", + "0.9893144801", + "0.9690985739", + "0.9604978052", + "1.0071496734", + "1.0264279461", + "1.077106966", + "0.9200293498", + "0.8892020557", + "0.9822077696", + "0.9811910697", + "0.968411994", + "0.9253367069", + "0.9901600211", + "0.9811032689", + "0.9837555312", + "1.0148948365", + "0.9565537033", + "0.9418200005", + "0.9234448722", + "0.9517605109", + "0.9232675856", + "0.9784135029", + "1.0094069029", + "1.0320397507", + "0.9887235737", + "0.9600697852", + "0.9803166819", + "0.9600702935", + "0.9464563186", + "0.9112012477", + "0.9461508072", + "0.8772403313", + "0.8945057023", + "0.9773144133", + "0.9656797525", + "0.9627813262", + "0.9729356334", + "0.9812985189", + "0.9706211577", + "0.9825617253", + "0.9710282678", + "0.9685667612", + "0.9369776296", + "0.9429725354", + "0.9492305326", + "0.9363849872", + "0.9699236241", + "0.9021528358", + "0.9606507761", + "0.9577955435", + "0.948036076", + "0.9472611996", + "0.9734033244", + "0.9500120876", + "0.9197059496", + "0.8343778502", + "0.846182395", + "0.8471996709", + "0.7912228937", + "0.8033498142", + "0.8000614122", + "0.7813872131", + "0.7900691648", + "0.7860283779", + "0.7760652281", + "0.8018662547", + "0.798554918", + "0.7619256397", + "0.7804640724", + "0.7382228134", + "0.7409017522", + "0.7548921675", + "0.7563932772", + "0.7430634321", + "0.732542038", + "0.7592964703", + "0.7452195232", + "0.7052132261", + "0.7125767617", + "0.8821443252", + "0.7024778164", + "0.7070221707", + "0.7106259446", + "0.7065733364", + "0.6736913097", + "0.7034999845", + "0.7235592267", + "0.7255519504", + "0.723634351", + "0.706951262", + "0.7057913324", + "0.6715549226", + "0.6738307241", + "0.7997141176", + "0.8109084737", + "0.6971952494", + "0.7028526612", + "0.6929239696", + "0.657055789", + "0.6826641859", + "0.6733990714", + "0.6655343236", + "0.6646803932", + "0.6722049491", + "0.6661974753", + "0.6852663942", + "0.6791900774", + "0.6909124282", + "0.6856796524", + "0.6724634032", + "0.6605297015", + "0.6701904274", + "0.6660369431", + "0.6719392457", + "0.6639909009", + "0.6394303652", + "0.6488433317", + "0.6426749163", + "0.6707061039", + "0.6684011563", + "0.5304565566", + "0.5442876794", + "0.5569797901", + "0.5878987628", + "0.5915226617", + "0.5803095185", + "0.5963599164", + "0.5769098286", + "0.5733331275", + "0.5902501864", + "0.5800511782", + "0.58460995", + "0.5926629717", + "0.5784481352", + "0.5702729286", + "0.6303639081", + "0.6068261348", + "0.6071431608", + "0.6077865747", + "0.60229398", + "0.5923993559", + "0.6525764323", + "0.6234852994", + "0.5457280654", + "0.5645430848", + "0.584308843", + "0.5604185333", + "0.542121908", + "0.5235920221", + "0.5398972136", + "0.5472536138", + "0.5296517908", + "0.5851598566", + "0.5913311137", + "0.5950487712", + "0.6303108628", + "0.5843224808", + "0.6099982885", + "0.4949620255", + "0.4778435874", + "0.5808713535", + "0.5918600421", + "0.5259313326", + "0.527208209", + "0.4853913611", + "0.5018105321", + "0.1259787954", + "0.0753561668", + "0.0", + "0.1596171233", + "0.6027171338", + "0.6090164694", + "0.589018164", + "0.6015466099", + "0.6000726122", + "0.5684744024", + "0.5782735419", + "0.6272020919", + "0.662626255", + "0.6374390757", + "0.6181272735", + "0.5669811983", + "0.578779799", + "0.5784732488", + "0.6092891442", + "0.60964684", + "0.5423643189", + "0.6801369253", + "0.6847205665", + "0.6944641425", + "0.6742256866", + "0.6359210064", + "0.7053145032", + "0.6862781797", + "0.6911398679", + "0.6279280215", + "0.6596401349", + "0.6682761936", + "0.6799339478", + "0.6623694083", + "0.6490050927", + "0.6133721111", + "0.6124577387", + "0.6189244285", + "0.6947627112", + "0.6748792235", + "0.7502621219", + "0.7042725688", + "0.6586149921", + "0.664820029", + "0.6697603184", + "0.6644516597", + "0.6586500587", + "0.6860903277", + "0.6682338639", + "0.6601843703", + "0.6511714033", + "0.6731088803", + "0.6676070355", + "0.6692409275", + "0.6331908364", + "0.6353473078", + "0.6084730949", + "0.6917367854", + "0.6674750091", + "0.6528331955", + "0.6331018496", + "0.7688255403", + "0.7720853486", + "0.7999923299", + "0.7546281509", + "0.7587314669", + "0.7727799464", + "0.7864964122", + "0.8101356334", + "0.7513309417", + "0.7293447738", + "0.7579510063", + "0.7262016617", + "0.729515487", + "0.7424827338", + "0.7228373689", + "0.7300997131", + "0.7157348602", + "0.7116464313", + "0.793390064", + "0.7855815296", + "0.7399007201", + "0.7606676828", + "0.7573484121", + "0.8105577716", + "0.7379561259", + "0.722167349", + "0.7397998759", + "0.7406229916", + "0.7420528538", + "0.7674738238", + "0.7793984732", + "0.8378624934", + "0.8412488876", + "0.8242945651", + "0.8095267028", + "0.7903005699", + "0.7594346906", + "1.1207167524", + "1.1451572289", + "1.1090019504", + "1.1196525551", + "1.0968970206", + "1.0831453997", + "1.1734937852", + "1.2023379703", + "1.2034558925", + "1.1277250279", + "1.1252571526", + "1.1253238682", + "1.119113974", + "1.1372011826", + "1.1132183268", + "1.0890704963", + "1.0518673864", + "1.060010384", + "1.0381918054", + "1.0589234549", + "1.0172078846", + "1.0316954175", + "1.0333478437", + "1.0389636847", + "1.0314708693", + "1.0310054702", + "1.0282663223", + "1.0185686952", + "1.0362759175", + "1.0164222819", + "1.0188694328", + "1.0146095984", + "1.0292680454", + "1.0483681475", + "0.9916660288", + "1.014066803", + "1.0221044338", + "1.0212465242", + "1.0045031788", + "0.9937253393", + "0.993856497", + "0.9985491446", + "1.0018659184", + "1.0345865304", + "1.0657886189", + "1.060716641", + "0.9846583705", + "0.9855496555", + "0.9808013438", + "0.9868505939", + "0.9078822759", + "0.8048389588", + "0.8184714718", + "1.0576985735", + "1.2655491993", + "1.0191897624", + "1.0797050479", + "1.0810969969", + "1.0569603895", + "1.0646388927", + "1.0873592837", + "1.0771608158", + "1.0945699118", + "1.0957239732", + "1.0922866432", + "1.0919476848", + "1.1187321571", + "1.0886896394", + "1.0923289179", + "1.0961534994", + "1.0963730332", + "1.0597256688", + "1.064601984", + "1.0856480241", + "1.0661002111", + "1.0734409582", + "1.0253523728", + "1.0178004671", + "1.0485130481", + "1.0446888011", + "1.0570378933", + "1.0618955291", + "1.0565401748", + "1.0561036046", + "1.0471547334", + "1.0591711536", + "1.0368204123", + "1.0527689309", + "1.06148167", + "1.0571963881", + "1.0653939545", + "1.080650176", + "1.0761195235", + "1.0172138195", + "1.0549643297", + "1.0454657263", + "1.0075597976", + "1.2777351251", + "1.3103717829", + "1.2758483436", + "1.2845271971", + "1.2584176533", + "1.0722078134", + "0.9254780415", + "0.9175106162", + "0.9708457273", + "0.9341178126", + "0.9391583037", + "0.9369277056", + "0.9245812849", + "0.929523886", + "0.8827736015", + "0.9380690776", + "0.9324313263", + "0.9779167492", + "0.9560119274", + "0.9483666912", + "0.9356968172", + "0.8485856819", + "0.852503298", + "0.9606580232", + "0.9432140269", + "0.9471613394", + "0.9419736884", + "0.9145575556", + "1.0036329206", + "0.9512024867", + "0.9512488616", + "1.0482977315", + "1.0788446943", + "1.034256508", + "1.0412488794", + "1.0140125346", + "1.0194003328", + "1.0185674549", + "1.0107341393", + "0.9533547574", + "1.1019685097", + "1.1561334772", + "1.1231564005", + "1.1123547996", + "1.1196607142", + "1.0602558756", + "1.0728567065", + "1.0799143195", + "1.0751522872", + "1.1245153287", + "1.1305022009", + "1.13990105", + "1.1519924302", + "1.0871684702", + "1.1289571913", + "1.127088775", + "1.0535032128", + "1.0516309418", + "1.0798267155", + "1.0729300846", + "1.1247488359", + "1.0284247247", + "0.9737540663", + "0.9915677972", + "0.9543124014", + "0.9867121289", + "1.0699428897", + "1.0831852459", + "1.0981014733", + "1.1133378805", + "1.027106476", + "0.9594955251", + "1.019878243", + "1.0925825373", + "0.9384170321", + "0.9672756342", + "0.9733978828", + "1.0301872547", + "0.9835173728", + "0.9900310186", + "0.9948133646", + "0.9760620039", + "1.0023085508", + "1.0695862528", + "1.076140417", + "1.103925932", + "1.1169289222", + "1.1135492222", + "0.9921861418", + "1.0192304489", + "0.9825194934", + "0.9879367119", + "1.0399213238", + "1.0722345451", + "1.0641699235", + "1.0725853869", + "1.0596800442", + "1.0467869582", + "1.0513334462", + "1.1049587381", + "1.1603445595", + "1.2571018807", + "1.1702262986", + "1.1695959937", + "1.1974217454", + "1.1348093857", + "1.201655505", + "1.1967015785", + "1.1616764778", + "1.1709399435", + "1.0662260624", + "1.3577831277", + "1.283937819", + "1.2931268394", + "1.2206364671", + "1.2329273087", + "1.2225422092", + "1.3247458183", + "1.2519774561", + "1.290165071", + "1.2842479452", + "1.2621324272", + "1.1913596407", + "1.1941044842", + "1.2387630343", + "1.2325237927", + "1.2371125933", + "1.2025110055", + "1.194091981", + "1.1860551396", + "1.2457042611", + "1.2045329052", + "1.2122016076", + "1.1827224364", + "1.1354693561", + "1.2390320084", + "1.1771161195", + "1.1702494748", + "1.1904777067", + "1.2666219643", + "1.2788935229", + "1.2874823861", + "1.2825946175", + "1.2763898911", + "1.2662300963", + "1.2652482075", + "1.2585951256", + "1.3767900031", + "1.3576732782", + "1.2316083981", + "1.2808937411", + "1.2808210592", + "1.2744618308", + "1.2769746013", + "1.3430571014", + "1.337607079", + "1.2924855396", + "1.278450196", + "1.2757972939", + "1.2643012099", + "1.2830346036", + "1.2515109794", + "1.2424668291", + "1.2383052692", + "1.2538659631", + "1.249336274", + "1.2402343263", + "1.2468042407", + "1.2614795545", + "1.276230127", + "1.2851644938", + "1.3116291815", + "1.263159789", + "1.2871715567", + "1.2980965803", + "1.2417849349", + "1.296104674", + "1.2710368217", + "1.2469742326", + "1.2464754618", + "1.2541687789", + "1.2481336692", + "1.2212657461", + "1.2292108042", + "1.2323530136", + "1.2036332981" + ] + }, + "essential_compounds": [ + "15dap", + "2ddglcn", + "4abut", + "ac", + "acald", + "adn", + "adocbl", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_L", + "arbt", + "asn_L", + "aso3", + "aso4", + "asp_L", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cgly", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "ctbt", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dgsn", + "din", + "drib", + "duri", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "fuc1p_L", + "g6p", + "gal", + "galct_D", + "galctn_D", + "galur", + "gbbtn", + "glc_D", + "glcn", + "glcr", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glyclt", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gsn", + "h2", + "h2o", + "h2s", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "indole", + "ins", + "k", + "lac_D", + "lac_L", + "leu_L", + "lys_L", + "malt", + "malthx", + "malttr", + "man6p", + "mantr", + "melib", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "no3", + "o2", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppi", + "pro_L", + "pydx", + "rib_D", + "ribflv", + "rmn", + "salcn", + "sbt_D", + "ser_D", + "ser_L", + "so4", + "succ", + "thm", + "thr_L", + "thymd", + "tre", + "trp_L", + "tyr_L", + "urea", + "uri", + "val_L", + "xan", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_441.json b/agents/agora/agent_441.json new file mode 100644 index 0000000000000000000000000000000000000000..bb1feecca1662cd04608560e74271fcb88d2a662 --- /dev/null +++ b/agents/agora/agent_441.json @@ -0,0 +1,1022 @@ +{ + "id": 441, + "name": "Haemophilus_haemolyticus_M19501", + "N_R": 1410, + "taxonomy": { + "k": 441, + "tax_distance": [ + "2.3563212025", + "1.9384433352", + "1.9317441061", + "2.1583268132", + "1.8397267393", + "1.8848554262", + "1.8661501284", + "1.8632075341", + "1.9271891324", + "1.8455450405", + "1.8626097439", + "1.9707320577", + "1.943749836", + "2.1717637939", + "2.220120611", + "2.2504531216", + "2.1308027237", + "2.1397268405", + "2.1752013161", + "1.7081856321", + "1.6435146554", + "1.3929933967", + "1.3263429643", + "1.2048632876", + "1.0306840088", + "1.0248728007", + "1.0215182293", + "1.0238792837", + "1.0081129937", + "0.9994272308", + "1.0018781369", + "1.103464073", + "1.1130018758", + "1.1093679658", + "1.1250640344", + "1.0935624544", + "1.1163083985", + "1.13461431", + "1.115582347", + "1.408523006", + "1.1533646273", + "1.0720035713", + "1.0787688775", + "1.0813764576", + "1.0781447156", + "1.0811180973", + "1.0762194924", + "1.0766045277", + "1.0707896169", + "1.0628284273", + "1.0044062493", + "1.0099186493", + "1.004177816", + "0.9763315454", + "0.9828532895", + "1.0119552867", + "0.9858783999", + "0.9838623723", + "1.0046167779", + "1.0022768832", + "0.9855350557", + "1.0108858273", + "1.0129606171", + "1.0116297239", + "1.0260209414", + "1.0277431033", + "1.0277431033", + "1.034388686", + "1.034388686", + "1.034388686", + "1.034388686", + "1.034388686", + "1.034388686", + "1.034388686", + "1.034388686", + "1.0303093233", + "1.0306550605", + "1.0242233529", + "1.0347158275", + "1.0338105856", + "1.029912416", + "1.0281697424", + "1.0294883122", + "1.0259864317", + "1.0209086834", + "1.024253809", + "1.0296995758", + "1.0251613841", + "1.010161428", + "1.0185325429", + "1.0132571577", + "1.0294050987", + "1.0247078095", + "1.0288413788", + "1.0068016682", + "1.0014014844", + "1.0154678395", + "1.0261282485", + "1.0429252915", + "1.0253350013", + "1.0153398828", + "1.0140220652", + "0.9947716853", + "1.0076501743", + "1.0665226193", + "1.0613707076", + "1.1282669649", + "1.0944277089", + "1.0316190681", + "1.0353453249", + "1.038078792", + "1.0309747105", + "1.0309747105", + "1.0123508083", + "1.0152549546", + "1.0071544379", + "1.0426801366", + "0.9794575871", + "0.9573666737", + "0.97523103", + "0.9619600347", + "0.9623856271", + "1.0806373407", + "1.0878277915", + "1.1092688044", + "0.9138650887", + "1.083614042", + "1.0902892761", + "1.0749261838", + "1.094560189", + "1.083747275", + "1.0888137613", + "1.0803174837", + "1.0733673786", + "1.0642376815", + "1.0648958019", + "1.0838097251", + "1.0569282812", + "1.0389640707", + "1.1328520116", + "1.1342258853", + "1.103537473", + "1.1611171636", + "1.0986957511", + "1.1041896939", + "1.1012286688", + "1.1259356539", + "1.1151132051", + "1.0232701331", + "0.9943600436", + "0.9555489836", + "0.9334476904", + "0.9248058841", + "0.919685693", + "0.9565573187", + "0.9590524446", + "0.9308643757", + "0.9192264218", + "0.9228129308", + "0.9917660416", + "0.9984744237", + "0.9681034771", + "1.0920215503", + "1.0865066549", + "1.0888477061", + "1.0465707799", + "1.0427168004", + "1.0806233741", + "1.0724465598", + "1.0412045373", + "1.042763896", + "1.0607838897", + "1.017479095", + "1.006642966", + "1.0078035185", + "1.0412898599", + "1.0294663072", + "1.01083945", + "1.0298280723", + "1.0111600736", + "1.0249750158", + "1.0191924448", + "1.0181240628", + "1.0386825145", + "1.0344699671", + "1.0173509217", + "1.0515792957", + "1.036345054", + "1.041457363", + "1.0408506775", + "1.0052490471", + "1.0012288389", + "0.9857614873", + "1.0041079925", + "1.0010416177", + "0.9753500239", + "0.958337276", + "0.9530296251", + "0.9577714097", + "0.956912799", + "0.9896787589", + "0.9886980971", + "1.0127378947", + "0.9906288677", + "0.9511208757", + "0.9542852865", + "0.9793471785", + "0.9756382944", + "0.9513876777", + "0.9439303278", + "0.9462835871", + "0.955461122", + "0.8812270251", + "0.9238301259", + "0.9081263552", + "0.901964592", + "0.8956843472", + "0.8835817296", + "0.886752069", + "0.9289241584", + "1.3633159896", + "1.4480941887", + "1.3606296136", + "1.3458119015", + "1.3241392687", + "0.8778169276", + "0.8966213336", + "0.9465541987", + "0.9081934467", + "0.9234306497", + "1.0369677873", + "0.9907383944", + "1.0123900686", + "0.9710567225", + "0.884395034", + "0.8967773769", + "0.9032684481", + "0.9636949849", + "0.9548954523", + "0.9529767213", + "0.9789790024", + "0.9762865668", + "0.9675185112", + "0.9990391348", + "1.0071225993", + "0.9913113261", + "0.9646930763", + "0.9593475032", + "0.9647581791", + "0.9534650379", + "0.8984341431", + "0.903518965", + "0.9027637415", + "0.949575326", + "0.9050050466", + "0.8874568482", + "0.9648816544", + "0.9181490146", + "0.8932315521", + "0.9062670433", + "0.8768825297", + "0.8420961715", + "0.9261842073", + "0.9285379937", + "0.9333152034", + "0.9386608014", + "0.9043597756", + "0.9650155249", + "0.9718516403", + "0.9683626378", + "0.9810277032", + "0.9671116604", + "0.9468957542", + "0.9382949855", + "0.9849468537", + "1.0042251264", + "1.0549041463", + "0.8978265301", + "0.866999236", + "0.9600049499", + "0.95898825", + "0.9462091743", + "0.9031338872", + "0.9679572014", + "0.9589004492", + "0.9615527115", + "0.9926920168", + "0.9343508836", + "0.9196171808", + "0.9012420525", + "0.9295576912", + "0.9010647659", + "0.9562106832", + "0.9872040832", + "1.009836931", + "0.966520754", + "0.9378669655", + "0.9581138622", + "0.9378674738", + "0.9242534989", + "0.888998428", + "0.9239479875", + "0.8550375116", + "0.8723028826", + "0.9551115936", + "0.9434769328", + "0.9405785065", + "0.9507328137", + "0.9590956992", + "0.948418338", + "0.9603589056", + "0.9488254481", + "0.9463639415", + "0.9147748099", + "0.9207697157", + "0.9270277129", + "0.9141821675", + "0.9477208044", + "0.8799500161", + "0.9384479564", + "0.9355927238", + "0.9258332563", + "0.9250583799", + "0.9512005047", + "0.9278092679", + "0.8975031299", + "0.8121750305", + "0.8239795753", + "0.8249968512", + "0.769020074", + "0.7811469945", + "0.7778585925", + "0.7591843934", + "0.7678663451", + "0.7638255582", + "0.7538624084", + "0.779663435", + "0.7763520983", + "0.73972282", + "0.7582612527", + "0.7160199937", + "0.7186989325", + "0.7326893478", + "0.7341904575", + "0.7208606124", + "0.7103392183", + "0.7370936506", + "0.7230167035", + "0.6830104064", + "0.690373942", + "0.8599415055", + "0.6802749967", + "0.684819351", + "0.6884231249", + "0.6843705167", + "0.65148849", + "0.6812971648", + "0.701356407", + "0.7033491307", + "0.7014315313", + "0.6847484423", + "0.6835885127", + "0.6493521029", + "0.6516279044", + "0.7775112979", + "0.788705654", + "0.6749924297", + "0.6806498415", + "0.6707211499", + "0.6348529693", + "0.6604613662", + "0.6511962517", + "0.6433315039", + "0.6424775735", + "0.6500021294", + "0.6439946556", + "0.6630635745", + "0.6569872577", + "0.6687096085", + "0.6634768327", + "0.6502605835", + "0.6383268818", + "0.6479876077", + "0.6438341234", + "0.649736426", + "0.6417880812", + "0.6172275455", + "0.626640512", + "0.6204720966", + "0.6485032842", + "0.6461983366", + "0.5082537369", + "0.5220848597", + "0.5347769704", + "0.5656959431", + "0.569319842", + "0.5581066988", + "0.5741570967", + "0.5547070089", + "0.5511303078", + "0.5680473667", + "0.5578483585", + "0.5624071303", + "0.570460152", + "0.5562453155", + "0.5480701089", + "0.6081610884", + "0.5846233151", + "0.5849403411", + "0.585583755", + "0.5800911603", + "0.5701965362", + "0.6303736126", + "0.6012824797", + "0.5235252457", + "0.5423402651", + "0.5621060233", + "0.5382157136", + "0.5199190883", + "0.5013892024", + "0.5176943939", + "0.5250507941", + "0.5074489711", + "0.5629570369", + "0.569128294", + "0.5728459515", + "0.6081080431", + "0.5621196611", + "0.5877954688", + "0.4727592058", + "0.4556407677", + "0.5586685338", + "0.5696572224", + "0.5037285129", + "0.5050053893", + "0.4631885414", + "0.4796077124", + "0.1484534551", + "0.1721925845", + "0.1596171233", + "0.0", + "0.5805143141", + "0.5868136497", + "0.5668153443", + "0.5793437902", + "0.5778697925", + "0.5462715827", + "0.5560707222", + "0.6049992722", + "0.6404234353", + "0.615236256", + "0.5959244538", + "0.5447783786", + "0.5565769793", + "0.5562704291", + "0.5870863245", + "0.5874440203", + "0.5201614992", + "0.6579341056", + "0.6625177468", + "0.6722613228", + "0.6520228669", + "0.6137181867", + "0.6831116835", + "0.66407536", + "0.6689370482", + "0.6057252018", + "0.6374373152", + "0.6460733739", + "0.6577311281", + "0.6401665886", + "0.626802273", + "0.5911692914", + "0.590254919", + "0.5967216088", + "0.6725598915", + "0.6526764038", + "0.7280593022", + "0.6820697491", + "0.6364121724", + "0.6426172093", + "0.6475574987", + "0.64224884", + "0.636447239", + "0.663887508", + "0.6460310442", + "0.6379815506", + "0.6289685836", + "0.6509060606", + "0.6454042158", + "0.6470381078", + "0.6109880167", + "0.6131444881", + "0.5862702752", + "0.6695339657", + "0.6452721894", + "0.6306303758", + "0.6108990299", + "0.7466227206", + "0.7498825289", + "0.7777895102", + "0.7324253312", + "0.7365286472", + "0.7505771267", + "0.7642935925", + "0.7879328137", + "0.729128122", + "0.7071419541", + "0.7357481866", + "0.703998842", + "0.7073126673", + "0.7202799141", + "0.7006345492", + "0.7078968934", + "0.6935320405", + "0.6894436116", + "0.7711872443", + "0.7633787099", + "0.7176979004", + "0.7384648631", + "0.7351455924", + "0.7883549519", + "0.7157533062", + "0.6999645293", + "0.7175970562", + "0.7184201719", + "0.7198500341", + "0.7452710041", + "0.7571956535", + "0.8156596737", + "0.8190460679", + "0.8020917454", + "0.7873238831", + "0.7680977502", + "0.7372318709", + "1.0985139327", + "1.1229544092", + "1.0867991307", + "1.0974497354", + "1.0746942009", + "1.06094258", + "1.1512909655", + "1.1801351506", + "1.1812530728", + "1.1055222082", + "1.1030543329", + "1.1031210485", + "1.0969111543", + "1.1149983629", + "1.0910155071", + "1.0668676766", + "1.0296645667", + "1.0378075643", + "1.0159889857", + "1.0367206352", + "0.9950050649", + "1.0094925978", + "1.011145024", + "1.016760865", + "1.0092680496", + "1.0088026505", + "1.0060635026", + "0.9963658755", + "1.0140730978", + "0.9942194622", + "0.9966666131", + "0.9924067787", + "1.0070652257", + "1.0261653278", + "0.9694632091", + "0.9918639833", + "0.9999016141", + "0.9990437045", + "0.9823003591", + "0.9715225196", + "0.9716536773", + "0.9763463249", + "0.9796630987", + "1.0123837107", + "1.0435857992", + "1.0385138213", + "0.9624555508", + "0.9633468358", + "0.9585985241", + "0.9646477742", + "0.8856794562", + "0.7826361391", + "0.7962686521", + "1.0354957538", + "1.2433463796", + "0.9969869427", + "1.0575022282", + "1.0588941772", + "1.0347575698", + "1.042436073", + "1.065156464", + "1.0549579961", + "1.0723670921", + "1.0735211535", + "1.0700838235", + "1.0697448651", + "1.0965293374", + "1.0664868197", + "1.0701260982", + "1.0739506797", + "1.0741702135", + "1.0375228491", + "1.0423991643", + "1.0634452044", + "1.0438973914", + "1.0512381385", + "1.0031495531", + "0.9955976474", + "1.0263102284", + "1.0224859814", + "1.0348350736", + "1.0396927094", + "1.0343373551", + "1.0339007849", + "1.0249519137", + "1.0369683339", + "1.0146175926", + "1.0305661112", + "1.0392788503", + "1.0349935684", + "1.0431911348", + "1.0584473563", + "1.0539167038", + "0.9950109998", + "1.03276151", + "1.0232629066", + "0.9853569779", + "1.2555323054", + "1.2881689632", + "1.2536455239", + "1.2623243774", + "1.2362148336", + "1.0500049937", + "0.9032752218", + "0.8953077965", + "0.9486429076", + "0.9119149929", + "0.916955484", + "0.9147248859", + "0.9023784652", + "0.9073210663", + "0.8605707818", + "0.9158662579", + "0.9102285066", + "0.9557139295", + "0.9338091077", + "0.9261638715", + "0.9134939975", + "0.8263828622", + "0.8303004783", + "0.9384552035", + "0.9210112072", + "0.9249585197", + "0.9197708687", + "0.8923547359", + "0.9814301009", + "0.928999667", + "0.9290460419", + "1.0260949118", + "1.0566418746", + "1.0120536883", + "1.0190460597", + "0.9918097149", + "0.9971975131", + "0.9963646352", + "0.9885313196", + "0.9311519377", + "1.07976569", + "1.1339306575", + "1.1009535808", + "1.0901519799", + "1.0974578945", + "1.0380530559", + "1.0506538868", + "1.0577114998", + "1.0529494675", + "1.102312509", + "1.1082993812", + "1.1176982303", + "1.1297896105", + "1.0649656505", + "1.1067543716", + "1.1048859553", + "1.0313003931", + "1.0294281221", + "1.0576238958", + "1.0507272649", + "1.1025460162", + "1.006221905", + "0.9515512466", + "0.9693649775", + "0.9321095817", + "0.9645093092", + "1.04774007", + "1.0609824262", + "1.0758986536", + "1.0911350608", + "1.0049036563", + "0.9372927054", + "0.9976754233", + "1.0703797176", + "0.9162142124", + "0.9450728145", + "0.9511950631", + "1.007984435", + "0.9613145531", + "0.9678281989", + "0.9726105449", + "0.9538591842", + "0.9801057311", + "1.0473834331", + "1.0539375973", + "1.0817231123", + "1.0947261025", + "1.0913464025", + "0.9699833221", + "0.9970276292", + "0.9603166737", + "0.9657338922", + "1.0177185041", + "1.0500317254", + "1.0419671038", + "1.0503825672", + "1.0374772245", + "1.0245841385", + "1.0291306265", + "1.0827559184", + "1.1381417398", + "1.234899061", + "1.1480234789", + "1.147393174", + "1.1752189257", + "1.112606566", + "1.1794526853", + "1.1744987588", + "1.1394736581", + "1.1487371238", + "1.0440232427", + "1.335580308", + "1.2617349993", + "1.2709240197", + "1.1984336474", + "1.210724489", + "1.2003393895", + "1.3025429986", + "1.2297746364", + "1.2679622513", + "1.2620451255", + "1.2399296075", + "1.169156821", + "1.1719016645", + "1.2165602146", + "1.210320973", + "1.2149097736", + "1.1803081858", + "1.1718891613", + "1.1638523199", + "1.2235014414", + "1.1823300855", + "1.1899987879", + "1.1605196167", + "1.1132665364", + "1.2168291887", + "1.1549132998", + "1.1480466551", + "1.168274887", + "1.2444191446", + "1.2566907032", + "1.2652795664", + "1.2603917978", + "1.2541870714", + "1.2440272766", + "1.2430453878", + "1.2363923059", + "1.3545871834", + "1.3354704585", + "1.2094055784", + "1.2586909214", + "1.2586182395", + "1.2522590111", + "1.2547717816", + "1.3208542817", + "1.3154042593", + "1.2702827199", + "1.2562473763", + "1.2535944742", + "1.2420983902", + "1.2608317839", + "1.2293081597", + "1.2202640094", + "1.2161024495", + "1.2316631434", + "1.2271334543", + "1.2180315066", + "1.224601421", + "1.2392767348", + "1.2540273073", + "1.2629616741", + "1.2894263618", + "1.2409569693", + "1.264968737", + "1.2758937606", + "1.2195821152", + "1.2739018543", + "1.248834002", + "1.2247714129", + "1.2242726421", + "1.2319659592", + "1.2259308495", + "1.1990629264", + "1.2070079845", + "1.2101501939", + "1.1814304784" + ] + }, + "essential_compounds": [ + "15dap", + "2ddglcn", + "2hyoxplac", + "4abut", + "4hbz", + "7dhcdchol", + "7ocholate", + "C02528", + "Lcyst", + "ac", + "acac", + "acald", + "acgam", + "adn", + "adocbl", + "akg", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arg_L", + "asn_L", + "asp_L", + "btn", + "but", + "butso3", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cholate", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "ddca", + "dgsn", + "din", + "dms", + "dmso", + "drib", + "duri", + "etha", + "ethso3", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "fuc1p_L", + "fum", + "g6p", + "gal", + "galct_D", + "galctn_D", + "galt", + "galur", + "gbbtn", + "gcald", + "glc_D", + "glcn", + "glcr", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glyclt", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gsn", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hexs", + "hg2", + "his_L", + "hxan", + "idon_L", + "ile_L", + "indole", + "ins", + "isetac", + "k", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man6p", + "man", + "mantr", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mops", + "mso3", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "oxa", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppa", + "ppi", + "pppn", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "rib_D", + "rmn", + "salcn", + "sbt_D", + "sel", + "selni", + "ser_D", + "ser_L", + "so4", + "spmd", + "succ", + "sucr", + "sulfac", + "taur", + "thm", + "thr_L", + "thymd", + "tma", + "tmao", + "tre", + "trp_L", + "tsul", + "ttdca", + "tyr_L", + "ura", + "urea", + "uri", + "val_L", + "xan", + "xtsn", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_442.json b/agents/agora/agent_442.json new file mode 100644 index 0000000000000000000000000000000000000000..df22c66bdf74912b349cceaf1cf4a448bc1311ec --- /dev/null +++ b/agents/agora/agent_442.json @@ -0,0 +1,1029 @@ +{ + "id": 442, + "name": "Haemophilus_influenzae_R2846", + "N_R": 1103, + "taxonomy": { + "k": 442, + "tax_distance": [ + "2.4072866884", + "1.9894088211", + "1.982709592", + "2.2092922991", + "1.8906922252", + "1.9358209121", + "1.9171156143", + "1.91417302", + "1.9781546183", + "1.8965105264", + "1.9135752298", + "2.0216975436", + "1.9947153219", + "2.2227292798", + "2.2710860969", + "2.3014186075", + "2.1817682096", + "2.1906923264", + "2.226166802", + "1.759151118", + "1.6944801413", + "1.4439588826", + "1.3773084502", + "1.2558287735", + "1.0816494947", + "1.0758382866", + "1.0724837152", + "1.0748447696", + "1.0590784796", + "1.0503927167", + "1.0528436228", + "1.1544295589", + "1.1639673617", + "1.1603334517", + "1.1760295203", + "1.1445279403", + "1.1672738844", + "1.1855797959", + "1.1665478329", + "1.4594884919", + "1.2043301132", + "1.1229690572", + "1.1297343634", + "1.1323419435", + "1.1291102015", + "1.1320835832", + "1.1271849783", + "1.1275700136", + "1.1217551028", + "1.1137939132", + "1.0553717352", + "1.0608841352", + "1.0551433019", + "1.0272970313", + "1.0338187754", + "1.0629207726", + "1.0368438858", + "1.0348278582", + "1.0555822638", + "1.0532423691", + "1.0365005416", + "1.0618513132", + "1.063926103", + "1.0625952098", + "1.0769864273", + "1.0787085892", + "1.0787085892", + "1.0853541719", + "1.0853541719", + "1.0853541719", + "1.0853541719", + "1.0853541719", + "1.0853541719", + "1.0853541719", + "1.0853541719", + "1.0812748092", + "1.0816205464", + "1.0751888388", + "1.0856813134", + "1.0847760715", + "1.0808779019", + "1.0791352283", + "1.0804537981", + "1.0769519176", + "1.0718741693", + "1.0752192949", + "1.0806650617", + "1.07612687", + "1.0611269139", + "1.0694980288", + "1.0642226436", + "1.0803705846", + "1.0756732954", + "1.0798068647", + "1.0577671541", + "1.0523669703", + "1.0664333254", + "1.0770937344", + "1.0938907774", + "1.0763004872", + "1.0663053687", + "1.0649875511", + "1.0457371712", + "1.0586156602", + "1.1174881052", + "1.1123361935", + "1.1792324508", + "1.1453931948", + "1.082584554", + "1.0863108108", + "1.0890442779", + "1.0819401964", + "1.0819401964", + "1.0633162942", + "1.0662204405", + "1.0581199238", + "1.0936456225", + "1.030423073", + "1.0083321596", + "1.0261965159", + "1.0129255206", + "1.013351113", + "1.1316028266", + "1.1387932774", + "1.1602342903", + "0.9648305746", + "1.1345795279", + "1.141254762", + "1.1258916697", + "1.1455256749", + "1.1347127609", + "1.1397792472", + "1.1312829696", + "1.1243328645", + "1.1152031674", + "1.1158612878", + "1.134775211", + "1.1078937671", + "1.0899295566", + "1.1838174975", + "1.1851913712", + "1.1545029589", + "1.2120826495", + "1.149661237", + "1.1551551798", + "1.1521941547", + "1.1769011398", + "1.166078691", + "1.074235619", + "1.0453255295", + "1.0065144695", + "0.9844131763", + "0.97577137", + "0.9706511789", + "1.0075228046", + "1.0100179305", + "0.9818298616", + "0.9701919077", + "0.9737784167", + "1.0427315275", + "1.0494399096", + "1.019068963", + "1.1429870362", + "1.1374721408", + "1.139813192", + "1.0975362658", + "1.0936822863", + "1.13158886", + "1.1234120457", + "1.0921700232", + "1.0937293819", + "1.1117493756", + "1.0684445809", + "1.0576084519", + "1.0587690044", + "1.0922553458", + "1.0804317931", + "1.0618049359", + "1.0807935582", + "1.0621255595", + "1.0759405017", + "1.0701579307", + "1.0690895487", + "1.0896480004", + "1.085435453", + "1.0683164076", + "1.1025447816", + "1.0873105399", + "1.0924228489", + "1.0918161634", + "1.056214533", + "1.0521943248", + "1.0367269732", + "1.0550734784", + "1.0520071036", + "1.0263155098", + "1.0093027619", + "1.003995111", + "1.0087368956", + "1.0078782849", + "1.0406442448", + "1.039663583", + "1.0637033806", + "1.0415943536", + "1.0020863616", + "1.0052507724", + "1.0303126644", + "1.0266037803", + "1.0023531636", + "0.9948958137", + "0.997249073", + "1.0064266079", + "0.932192511", + "0.9747956118", + "0.9590918411", + "0.9529300779", + "0.9466498331", + "0.9345472155", + "0.9377175549", + "0.9798896443", + "1.4142814755", + "1.4990596746", + "1.4115950995", + "1.3967773874", + "1.3751047546", + "0.9287824135", + "0.9475868195", + "0.9975196846", + "0.9591589326", + "0.9743961356", + "1.0879332732", + "1.0417038803", + "1.0633555545", + "1.0220222084", + "0.9353605199", + "0.9477428628", + "0.954233934", + "1.0146604708", + "1.0058609382", + "1.0039422072", + "1.0299444883", + "1.0272520527", + "1.0184839971", + "1.0500046207", + "1.0580880852", + "1.042276812", + "1.0156585622", + "1.0103129891", + "1.015723665", + "1.0044305238", + "0.949399629", + "0.9544844509", + "0.9537292274", + "1.0005408119", + "0.9559705325", + "0.9384223341", + "1.0158471403", + "0.9691145005", + "0.944197038", + "0.9572325292", + "0.9278480156", + "0.8930616574", + "0.9771496932", + "0.9795034796", + "0.9842806893", + "0.9896262873", + "0.9553252615", + "1.0159810108", + "1.0228171262", + "1.0193281237", + "1.0319931891", + "1.0180771463", + "0.9978612401", + "0.9892604714", + "1.0359123396", + "1.0551906123", + "1.1058696322", + "0.948792016", + "0.9179647219", + "1.0109704358", + "1.0099537359", + "0.9971746602", + "0.9540993731", + "1.0189226873", + "1.0098659351", + "1.0125181974", + "1.0436575027", + "0.9853163695", + "0.9705826667", + "0.9522075384", + "0.9805231771", + "0.9520302518", + "1.0071761691", + "1.0381695691", + "1.0608024169", + "1.0174862399", + "0.9888324514", + "1.0090793481", + "0.9888329597", + "0.9752189848", + "0.9399639139", + "0.9749134734", + "0.9060029975", + "0.9232683685", + "1.0060770795", + "0.9944424187", + "0.9915439924", + "1.0016982996", + "1.0100611851", + "0.9993838239", + "1.0113243915", + "0.999790934", + "0.9973294274", + "0.9657402958", + "0.9717352016", + "0.9779931988", + "0.9651476534", + "0.9986862903", + "0.930915502", + "0.9894134423", + "0.9865582097", + "0.9767987422", + "0.9760238658", + "1.0021659906", + "0.9787747538", + "0.9484686158", + "0.8631405164", + "0.8749450612", + "0.8759623371", + "0.8199855599", + "0.8321124804", + "0.8288240784", + "0.8101498793", + "0.818831831", + "0.8147910441", + "0.8048278943", + "0.8306289209", + "0.8273175842", + "0.7906883059", + "0.8092267386", + "0.7669854796", + "0.7696644184", + "0.7836548337", + "0.7851559434", + "0.7718260983", + "0.7613047042", + "0.7880591365", + "0.7739821894", + "0.7339758923", + "0.7413394279", + "0.9109069914", + "0.7312404826", + "0.7357848369", + "0.7393886108", + "0.7353360026", + "0.7024539759", + "0.7322626507", + "0.7523218929", + "0.7543146166", + "0.7523970172", + "0.7357139282", + "0.7345539986", + "0.7003175888", + "0.7025933903", + "0.8284767838", + "0.8396711399", + "0.7259579156", + "0.7316153274", + "0.7216866358", + "0.6858184552", + "0.7114268521", + "0.7021617376", + "0.6942969898", + "0.6934430594", + "0.7009676153", + "0.6949601415", + "0.7140290604", + "0.7079527436", + "0.7196750944", + "0.7144423186", + "0.7012260694", + "0.6892923677", + "0.6989530936", + "0.6947996093", + "0.7007019119", + "0.6927535671", + "0.6681930314", + "0.6776059979", + "0.6714375825", + "0.6994687701", + "0.6971638225", + "0.6894447426", + "0.7032758654", + "0.7159679761", + "0.7468869488", + "0.7505108477", + "0.7392977045", + "0.7553481024", + "0.7358980146", + "0.7323213135", + "0.7492383724", + "0.7390393642", + "0.743598136", + "0.7516511577", + "0.7374363212", + "0.7292611146", + "0.7893520941", + "0.7658143208", + "0.7661313468", + "0.7667747607", + "0.761282166", + "0.7513875419", + "0.8115646183", + "0.7824734854", + "0.7047162514", + "0.7235312708", + "0.743297029", + "0.7194067193", + "0.701110094", + "0.6825802081", + "0.6988853996", + "0.7062417998", + "0.6886399768", + "0.7441480426", + "0.7503192997", + "0.7540369572", + "0.7892990488", + "0.7433106668", + "0.7689864745", + "0.6539502115", + "0.6368317734", + "0.7398595395", + "0.7508482281", + "0.6849195186", + "0.686196395", + "0.6443795471", + "0.6607987181", + "0.5915534656", + "0.615292595", + "0.6027171338", + "0.5805143141", + "0.0", + "0.1098544158", + "0.229485513", + "0.2935683827", + "0.292094385", + "0.3096329844", + "0.3194321239", + "0.3683606739", + "0.403784837", + "0.3785976577", + "0.3592858555", + "0.3430153873", + "0.354813988", + "0.3545074378", + "0.3853233332", + "0.385681029", + "0.4886529123", + "0.7088995915", + "0.7134832327", + "0.7232268087", + "0.7029883528", + "0.6646836726", + "0.7340771694", + "0.7150408459", + "0.7199025341", + "0.6566906877", + "0.6884028011", + "0.6970388598", + "0.708696614", + "0.6911320745", + "0.6777677589", + "0.6421347773", + "0.6412204049", + "0.6476870947", + "0.7235253774", + "0.7036418897", + "0.7790247881", + "0.733035235", + "0.6873776583", + "0.6935826952", + "0.6985229846", + "0.6932143259", + "0.6874127249", + "0.7148529939", + "0.6969965301", + "0.6889470365", + "0.6799340695", + "0.7018715465", + "0.6963697017", + "0.6980035937", + "0.6619535026", + "0.664109974", + "0.6372357611", + "0.7204994516", + "0.6962376753", + "0.6815958617", + "0.6618645158", + "0.7975882065", + "0.8008480148", + "0.8287549961", + "0.7833908171", + "0.7874941331", + "0.8015426126", + "0.8152590784", + "0.8388982996", + "0.7800936079", + "0.75810744", + "0.7867136725", + "0.7549643279", + "0.7582781532", + "0.7712454", + "0.7516000351", + "0.7588623793", + "0.7444975264", + "0.7404090975", + "0.8221527302", + "0.8143441958", + "0.7686633863", + "0.789430349", + "0.7861110783", + "0.8393204378", + "0.7667187921", + "0.7509300152", + "0.7685625421", + "0.7693856578", + "0.77081552", + "0.79623649", + "0.8081611394", + "0.8666251596", + "0.8700115538", + "0.8530572313", + "0.838289369", + "0.8190632361", + "0.7881973568", + "1.1494794186", + "1.1739198951", + "1.1377646166", + "1.1484152213", + "1.1256596868", + "1.1119080659", + "1.2022564514", + "1.2311006365", + "1.2322185587", + "1.1564876941", + "1.1540198188", + "1.1540865344", + "1.1478766402", + "1.1659638488", + "1.141980993", + "1.1178331625", + "1.0806300526", + "1.0887730502", + "1.0669544716", + "1.0876861211", + "1.0459705508", + "1.0604580837", + "1.0621105099", + "1.0677263509", + "1.0602335355", + "1.0597681364", + "1.0570289885", + "1.0473313614", + "1.0650385837", + "1.0451849481", + "1.047632099", + "1.0433722646", + "1.0580307116", + "1.0771308137", + "1.020428695", + "1.0428294692", + "1.0508671", + "1.0500091904", + "1.033265845", + "1.0224880055", + "1.0226191632", + "1.0273118108", + "1.0306285846", + "1.0633491966", + "1.0945512851", + "1.0894793072", + "1.0134210367", + "1.0143123217", + "1.00956401", + "1.0156132601", + "0.9366449421", + "0.833601625", + "0.847234138", + "1.0864612397", + "1.2943118655", + "1.0479524286", + "1.1084677141", + "1.1098596631", + "1.0857230557", + "1.0934015589", + "1.1161219499", + "1.105923482", + "1.123332578", + "1.1244866394", + "1.1210493094", + "1.120710351", + "1.1474948233", + "1.1174523056", + "1.1210915841", + "1.1249161656", + "1.1251356994", + "1.088488335", + "1.0933646502", + "1.1144106903", + "1.0948628773", + "1.1022036244", + "1.054115039", + "1.0465631333", + "1.0772757143", + "1.0734514673", + "1.0858005595", + "1.0906581953", + "1.085302841", + "1.0848662708", + "1.0759173996", + "1.0879338198", + "1.0655830785", + "1.0815315971", + "1.0902443362", + "1.0859590543", + "1.0941566207", + "1.1094128422", + "1.1048821897", + "1.0459764857", + "1.0837269959", + "1.0742283925", + "1.0363224638", + "1.3064977913", + "1.3391344491", + "1.3046110098", + "1.3132898633", + "1.2871803195", + "1.1009704796", + "0.9542407077", + "0.9462732824", + "0.9996083935", + "0.9628804788", + "0.9679209699", + "0.9656903718", + "0.9533439511", + "0.9582865522", + "0.9115362677", + "0.9668317438", + "0.9611939925", + "1.0066794154", + "0.9847745936", + "0.9771293574", + "0.9644594834", + "0.8773483481", + "0.8812659642", + "0.9894206894", + "0.9719766931", + "0.9759240056", + "0.9707363546", + "0.9433202218", + "1.0323955868", + "0.9799651529", + "0.9800115278", + "1.0770603977", + "1.1076073605", + "1.0630191742", + "1.0700115456", + "1.0427752008", + "1.048162999", + "1.0473301211", + "1.0394968055", + "0.9821174236", + "1.1307311759", + "1.1848961434", + "1.1519190667", + "1.1411174658", + "1.1484233804", + "1.0890185418", + "1.1016193727", + "1.1086769857", + "1.1039149534", + "1.1532779949", + "1.1592648671", + "1.1686637162", + "1.1807550964", + "1.1159311364", + "1.1577198575", + "1.1558514412", + "1.082265879", + "1.080393608", + "1.1085893817", + "1.1016927508", + "1.1535115021", + "1.0571873909", + "1.0025167325", + "1.0203304634", + "0.9830750676", + "1.0154747951", + "1.0987055559", + "1.1119479121", + "1.1268641395", + "1.1421005467", + "1.0558691422", + "0.9882581913", + "1.0486409092", + "1.1213452035", + "0.9671796983", + "0.9960383004", + "1.002160549", + "1.0589499209", + "1.012280039", + "1.0187936848", + "1.0235760308", + "1.0048246701", + "1.031071217", + "1.098348919", + "1.1049030832", + "1.1326885982", + "1.1456915884", + "1.1423118884", + "1.020948808", + "1.0479931151", + "1.0112821596", + "1.0166993781", + "1.06868399", + "1.1009972113", + "1.0929325897", + "1.1013480531", + "1.0884427104", + "1.0755496244", + "1.0800961124", + "1.1337214043", + "1.1891072257", + "1.2858645469", + "1.1989889648", + "1.1983586599", + "1.2261844116", + "1.1635720519", + "1.2304181712", + "1.2254642447", + "1.190439144", + "1.1997026097", + "1.0949887286", + "1.3865457939", + "1.3127004852", + "1.3218895056", + "1.2493991333", + "1.2616899749", + "1.2513048754", + "1.3535084845", + "1.2807401223", + "1.3189277372", + "1.3130106114", + "1.2908950934", + "1.2201223069", + "1.2228671504", + "1.2675257005", + "1.2612864589", + "1.2658752595", + "1.2312736717", + "1.2228546472", + "1.2148178058", + "1.2744669273", + "1.2332955714", + "1.2409642738", + "1.2114851026", + "1.1642320223", + "1.2677946746", + "1.2058787857", + "1.199012141", + "1.2192403729", + "1.2953846305", + "1.3076561891", + "1.3162450523", + "1.3113572837", + "1.3051525573", + "1.2949927625", + "1.2940108737", + "1.2873577918", + "1.4055526693", + "1.3864359444", + "1.2603710643", + "1.3096564073", + "1.3095837254", + "1.303224497", + "1.3057372675", + "1.3718197676", + "1.3663697452", + "1.3212482058", + "1.3072128622", + "1.3045599601", + "1.2930638761", + "1.3117972698", + "1.2802736456", + "1.2712294953", + "1.2670679354", + "1.2826286293", + "1.2780989402", + "1.2689969925", + "1.2755669069", + "1.2902422207", + "1.3049927932", + "1.31392716", + "1.3403918477", + "1.2919224552", + "1.3159342229", + "1.3268592465", + "1.2705476011", + "1.3248673402", + "1.2997994879", + "1.2757368988", + "1.275238128", + "1.2829314451", + "1.2768963354", + "1.2500284123", + "1.2579734704", + "1.2611156798", + "1.2323959643" + ] + }, + "essential_compounds": [ + "15dap", + "2ddglcn", + "2hyoxplac", + "3hpppn", + "4abut", + "4hbz", + "4hoxpacd", + "7dhcdchol", + "7ocholate", + "C02528", + "Lcyst", + "ac", + "acac", + "acald", + "acgam", + "adn", + "adocbl", + "akg", + "ala_D", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arg_L", + "asn_L", + "aso3", + "aso4", + "asp_L", + "btn", + "but", + "butso3", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cgly", + "chol", + "cholate", + "cinnm", + "cit", + "cl", + "co2", + "cobalt2", + "crn", + "csn", + "ctbt", + "cu2", + "cynt", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "ddca", + "dgsn", + "dhcinnm", + "dhpppn", + "din", + "dms", + "dmso", + "drib", + "duri", + "etha", + "ethso3", + "etoh", + "fe2", + "fe3", + "fecrm", + "for", + "fru", + "fuc1p_L", + "fum", + "g6p", + "gal", + "galct_D", + "galctn_D", + "galt", + "galur", + "gbbtn", + "gcald", + "glc_D", + "glcn", + "glcr", + "glcur", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glyclt", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gsn", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hexs", + "hg2", + "his_L", + "hxan", + "ile_L", + "indole", + "ins", + "isetac", + "k", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "mal_L", + "malt", + "malthx", + "malttr", + "man6p", + "man", + "mantr", + "melib", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mops", + "mso3", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "no3", + "o2", + "ocdca", + "orn", + "pb", + "phe_L", + "pi", + "pnto_R", + "ppa", + "ppi", + "pppn", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "rib_D", + "rmn", + "salcn", + "sbt_D", + "sel", + "selni", + "ser_D", + "ser_L", + "so4", + "spmd", + "succ", + "sucr", + "sulfac", + "taur", + "thm", + "thr_L", + "thymd", + "tma", + "tmao", + "tre", + "trp_L", + "tsul", + "ttdca", + "tym", + "tyr_L", + "ura", + "urea", + "uri", + "val_L", + "xan", + "xtsn", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_443.json b/agents/agora/agent_443.json new file mode 100644 index 0000000000000000000000000000000000000000..486d259442b4b4b669aa8931381ea086b7476e38 --- /dev/null +++ b/agents/agora/agent_443.json @@ -0,0 +1,935 @@ +{ + "id": 443, + "name": "Haemophilus_parainfluenzae_T3T1", + "N_R": 1027, + "taxonomy": { + "k": 443, + "tax_distance": [ + "2.413586024", + "1.9957081567", + "1.9890089276", + "2.2155916347", + "1.8969915608", + "1.9421202477", + "1.9234149499", + "1.9204723556", + "1.9844539539", + "1.902809862", + "1.9198745654", + "2.0279968792", + "2.0010146575", + "2.2290286154", + "2.2773854325", + "2.3077179431", + "2.1880675452", + "2.196991662", + "2.2324661376", + "1.7654504536", + "1.7007794769", + "1.4502582182", + "1.3836077858", + "1.2621281091", + "1.0879488303", + "1.0821376222", + "1.0787830508", + "1.0811441052", + "1.0653778152", + "1.0566920523", + "1.0591429584", + "1.1607288945", + "1.1702666973", + "1.1666327873", + "1.1823288559", + "1.1508272759", + "1.17357322", + "1.1918791315", + "1.1728471685", + "1.4657878275", + "1.2106294488", + "1.1292683928", + "1.136033699", + "1.1386412791", + "1.1354095371", + "1.1383829188", + "1.1334843139", + "1.1338693492", + "1.1280544384", + "1.1200932488", + "1.0616710708", + "1.0671834708", + "1.0614426375", + "1.0335963669", + "1.040118111", + "1.0692201082", + "1.0431432214", + "1.0411271938", + "1.0618815994", + "1.0595417047", + "1.0427998772", + "1.0681506488", + "1.0702254386", + "1.0688945454", + "1.0832857629", + "1.0850079248", + "1.0850079248", + "1.0916535075", + "1.0916535075", + "1.0916535075", + "1.0916535075", + "1.0916535075", + "1.0916535075", + "1.0916535075", + "1.0916535075", + "1.0875741448", + "1.087919882", + "1.0814881744", + "1.091980649", + "1.0910754071", + "1.0871772375", + "1.0854345639", + "1.0867531337", + "1.0832512532", + "1.0781735049", + "1.0815186305", + "1.0869643973", + "1.0824262056", + "1.0674262495", + "1.0757973644", + "1.0705219792", + "1.0866699202", + "1.081972631", + "1.0861062003", + "1.0640664897", + "1.0586663059", + "1.072732661", + "1.08339307", + "1.100190113", + "1.0825998228", + "1.0726047043", + "1.0712868867", + "1.0520365068", + "1.0649149958", + "1.1237874408", + "1.1186355291", + "1.1855317864", + "1.1516925304", + "1.0888838896", + "1.0926101464", + "1.0953436135", + "1.088239532", + "1.088239532", + "1.0696156298", + "1.0725197761", + "1.0644192594", + "1.0999449581", + "1.0367224086", + "1.0146314952", + "1.0324958515", + "1.0192248562", + "1.0196504486", + "1.1379021622", + "1.145092613", + "1.1665336259", + "0.9711299102", + "1.1408788635", + "1.1475540976", + "1.1321910053", + "1.1518250105", + "1.1410120965", + "1.1460785828", + "1.1375823052", + "1.1306322001", + "1.121502503", + "1.1221606234", + "1.1410745466", + "1.1141931027", + "1.0962288922", + "1.1901168331", + "1.1914907068", + "1.1608022945", + "1.2183819851", + "1.1559605726", + "1.1614545154", + "1.1584934903", + "1.1832004754", + "1.1723780266", + "1.0805349546", + "1.0516248651", + "1.0128138051", + "0.9907125119", + "0.9820707056", + "0.9769505145", + "1.0138221402", + "1.0163172661", + "0.9881291972", + "0.9764912433", + "0.9800777523", + "1.0490308631", + "1.0557392452", + "1.0253682986", + "1.1492863718", + "1.1437714764", + "1.1461125276", + "1.1038356014", + "1.0999816219", + "1.1378881956", + "1.1297113813", + "1.0984693588", + "1.1000287175", + "1.1180487112", + "1.0747439165", + "1.0639077875", + "1.06506834", + "1.0985546814", + "1.0867311287", + "1.0681042715", + "1.0870928938", + "1.0684248951", + "1.0822398373", + "1.0764572663", + "1.0753888843", + "1.095947336", + "1.0917347886", + "1.0746157432", + "1.1088441172", + "1.0936098755", + "1.0987221845", + "1.098115499", + "1.0625138686", + "1.0584936604", + "1.0430263088", + "1.061372814", + "1.0583064392", + "1.0326148454", + "1.0156020975", + "1.0102944466", + "1.0150362312", + "1.0141776205", + "1.0469435804", + "1.0459629186", + "1.0700027162", + "1.0478936892", + "1.0083856972", + "1.011550108", + "1.036612", + "1.0329031159", + "1.0086524992", + "1.0011951493", + "1.0035484086", + "1.0127259435", + "0.9384918466", + "0.9810949474", + "0.9653911767", + "0.9592294135", + "0.9529491687", + "0.9408465511", + "0.9440168905", + "0.9861889799", + "1.4205808111", + "1.5053590102", + "1.4178944351", + "1.403076723", + "1.3814040902", + "0.9350817491", + "0.9538861551", + "1.0038190202", + "0.9654582682", + "0.9806954712", + "1.0942326088", + "1.0480032159", + "1.0696548901", + "1.028321544", + "0.9416598555", + "0.9540421984", + "0.9605332696", + "1.0209598064", + "1.0121602738", + "1.0102415428", + "1.0362438239", + "1.0335513883", + "1.0247833327", + "1.0563039563", + "1.0643874208", + "1.0485761476", + "1.0219578978", + "1.0166123247", + "1.0220230006", + "1.0107298594", + "0.9556989646", + "0.9607837865", + "0.960028563", + "1.0068401475", + "0.9622698681", + "0.9447216697", + "1.0221464759", + "0.9754138361", + "0.9504963736", + "0.9635318648", + "0.9341473512", + "0.899360993", + "0.9834490288", + "0.9858028152", + "0.9905800249", + "0.9959256229", + "0.9616245971", + "1.0222803464", + "1.0291164618", + "1.0256274593", + "1.0382925247", + "1.0243764819", + "1.0041605757", + "0.995559807", + "1.0422116752", + "1.0614899479", + "1.1121689678", + "0.9550913516", + "0.9242640575", + "1.0172697714", + "1.0162530715", + "1.0034739958", + "0.9603987087", + "1.0252220229", + "1.0161652707", + "1.018817533", + "1.0499568383", + "0.9916157051", + "0.9768820023", + "0.958506874", + "0.9868225127", + "0.9583295874", + "1.0134755047", + "1.0444689047", + "1.0671017525", + "1.0237855755", + "0.995131787", + "1.0153786837", + "0.9951322953", + "0.9815183204", + "0.9462632495", + "0.981212809", + "0.9123023331", + "0.9295677041", + "1.0123764151", + "1.0007417543", + "0.997843328", + "1.0079976352", + "1.0163605207", + "1.0056831595", + "1.0176237271", + "1.0060902696", + "1.003628763", + "0.9720396314", + "0.9780345372", + "0.9842925344", + "0.971446989", + "1.0049856259", + "0.9372148376", + "0.9957127779", + "0.9928575453", + "0.9830980778", + "0.9823232014", + "1.0084653262", + "0.9850740894", + "0.9547679514", + "0.869439852", + "0.8812443968", + "0.8822616727", + "0.8262848955", + "0.838411816", + "0.835123414", + "0.8164492149", + "0.8251311666", + "0.8210903797", + "0.8111272299", + "0.8369282565", + "0.8336169198", + "0.7969876415", + "0.8155260742", + "0.7732848152", + "0.775963754", + "0.7899541693", + "0.791455279", + "0.7781254339", + "0.7676040398", + "0.7943584721", + "0.780281525", + "0.7402752279", + "0.7476387635", + "0.917206327", + "0.7375398182", + "0.7420841725", + "0.7456879464", + "0.7416353382", + "0.7087533115", + "0.7385619863", + "0.7586212285", + "0.7606139522", + "0.7586963528", + "0.7420132638", + "0.7408533342", + "0.7066169244", + "0.7088927259", + "0.8347761194", + "0.8459704755", + "0.7322572512", + "0.737914663", + "0.7279859714", + "0.6921177908", + "0.7177261877", + "0.7084610732", + "0.7005963254", + "0.699742395", + "0.7072669509", + "0.7012594771", + "0.720328396", + "0.7142520792", + "0.72597443", + "0.7207416542", + "0.707525405", + "0.6955917033", + "0.7052524292", + "0.7010989449", + "0.7070012475", + "0.6990529027", + "0.674492367", + "0.6839053335", + "0.6777369181", + "0.7057681057", + "0.7034631581", + "0.6957440782", + "0.709575201", + "0.7222673117", + "0.7531862844", + "0.7568101833", + "0.7455970401", + "0.761647438", + "0.7421973502", + "0.7386206491", + "0.755537708", + "0.7453386998", + "0.7498974716", + "0.7579504933", + "0.7437356568", + "0.7355604502", + "0.7956514297", + "0.7721136564", + "0.7724306824", + "0.7730740963", + "0.7675815016", + "0.7576868775", + "0.8178639539", + "0.788772821", + "0.711015587", + "0.7298306064", + "0.7495963646", + "0.7257060549", + "0.7074094296", + "0.6888795437", + "0.7051847352", + "0.7125411354", + "0.6949393124", + "0.7504473782", + "0.7566186353", + "0.7603362928", + "0.7955983844", + "0.7496100024", + "0.7752858101", + "0.6602495471", + "0.643131109", + "0.7461588751", + "0.7571475637", + "0.6912188542", + "0.6924957306", + "0.6506788827", + "0.6670980537", + "0.5978528012", + "0.6215919306", + "0.6090164694", + "0.5868136497", + "0.1098544158", + "0.0", + "0.2357848486", + "0.2998677183", + "0.2983937206", + "0.31593232", + "0.3257314595", + "0.3746600095", + "0.4100841726", + "0.3848969933", + "0.3655851911", + "0.3493147229", + "0.3611133236", + "0.3608067734", + "0.3916226688", + "0.3919803646", + "0.4949522479", + "0.7151989271", + "0.7197825683", + "0.7295261443", + "0.7092876884", + "0.6709830082", + "0.740376505", + "0.7213401815", + "0.7262018697", + "0.6629900233", + "0.6947021367", + "0.7033381954", + "0.7149959496", + "0.6974314101", + "0.6840670945", + "0.6484341129", + "0.6475197405", + "0.6539864303", + "0.729824713", + "0.7099412253", + "0.7853241237", + "0.7393345706", + "0.6936769939", + "0.6998820308", + "0.7048223202", + "0.6995136615", + "0.6937120605", + "0.7211523295", + "0.7032958657", + "0.6952463721", + "0.6862334051", + "0.7081708821", + "0.7026690373", + "0.7043029293", + "0.6682528382", + "0.6704093096", + "0.6435350967", + "0.7267987872", + "0.7025370109", + "0.6878951973", + "0.6681638514", + "0.8038875421", + "0.8071473504", + "0.8350543317", + "0.7896901527", + "0.7937934687", + "0.8078419482", + "0.821558414", + "0.8451976352", + "0.7863929435", + "0.7644067756", + "0.7930130081", + "0.7612636635", + "0.7645774888", + "0.7775447356", + "0.7578993707", + "0.7651617149", + "0.750796862", + "0.7467084331", + "0.8284520658", + "0.8206435314", + "0.7749627219", + "0.7957296846", + "0.7924104139", + "0.8456197734", + "0.7730181277", + "0.7572293508", + "0.7748618777", + "0.7756849934", + "0.7771148556", + "0.8025358256", + "0.814460475", + "0.8729244952", + "0.8763108894", + "0.8593565669", + "0.8445887046", + "0.8253625717", + "0.7944966924", + "1.1557787542", + "1.1802192307", + "1.1440639522", + "1.1547145569", + "1.1319590224", + "1.1182074015", + "1.208555787", + "1.2373999721", + "1.2385178943", + "1.1627870297", + "1.1603191544", + "1.16038587", + "1.1541759758", + "1.1722631844", + "1.1482803286", + "1.1241324981", + "1.0869293882", + "1.0950723858", + "1.0732538072", + "1.0939854567", + "1.0522698864", + "1.0667574193", + "1.0684098455", + "1.0740256865", + "1.0665328711", + "1.066067472", + "1.0633283241", + "1.053630697", + "1.0713379193", + "1.0514842837", + "1.0539314346", + "1.0496716002", + "1.0643300472", + "1.0834301493", + "1.0267280306", + "1.0491288048", + "1.0571664356", + "1.056308526", + "1.0395651806", + "1.0287873411", + "1.0289184988", + "1.0336111464", + "1.0369279202", + "1.0696485322", + "1.1008506207", + "1.0957786428", + "1.0197203723", + "1.0206116573", + "1.0158633456", + "1.0219125957", + "0.9429442777", + "0.8399009606", + "0.8535334736", + "1.0927605753", + "1.3006112011", + "1.0542517642", + "1.1147670497", + "1.1161589987", + "1.0920223913", + "1.0997008945", + "1.1224212855", + "1.1122228176", + "1.1296319136", + "1.130785975", + "1.127348645", + "1.1270096866", + "1.1537941589", + "1.1237516412", + "1.1273909197", + "1.1312155012", + "1.131435035", + "1.0947876706", + "1.0996639858", + "1.1207100259", + "1.1011622129", + "1.10850296", + "1.0604143746", + "1.0528624689", + "1.0835750499", + "1.0797508029", + "1.0920998951", + "1.0969575309", + "1.0916021766", + "1.0911656064", + "1.0822167352", + "1.0942331554", + "1.0718824141", + "1.0878309327", + "1.0965436718", + "1.0922583899", + "1.1004559563", + "1.1157121778", + "1.1111815253", + "1.0522758213", + "1.0900263315", + "1.0805277281", + "1.0426217994", + "1.3127971269", + "1.3454337847", + "1.3109103454", + "1.3195891989", + "1.2934796551", + "1.1072698152", + "0.9605400433", + "0.952572618", + "1.0059077291", + "0.9691798144", + "0.9742203055", + "0.9719897074", + "0.9596432867", + "0.9645858878", + "0.9178356033", + "0.9731310794", + "0.9674933281", + "1.012978751", + "0.9910739292", + "0.983428693", + "0.970758819", + "0.8836476837", + "0.8875652998", + "0.995720025", + "0.9782760287", + "0.9822233412", + "0.9770356902", + "0.9496195574", + "1.0386949224", + "0.9862644885", + "0.9863108634", + "1.0833597333", + "1.1139066961", + "1.0693185098", + "1.0763108812", + "1.0490745364", + "1.0544623346", + "1.0536294567", + "1.0457961411", + "0.9884167592", + "1.1370305115", + "1.191195479", + "1.1582184023", + "1.1474168014", + "1.154722716", + "1.0953178774", + "1.1079187083", + "1.1149763213", + "1.110214289", + "1.1595773305", + "1.1655642027", + "1.1749630518", + "1.187054432", + "1.122230472", + "1.1640191931", + "1.1621507768", + "1.0885652146", + "1.0866929436", + "1.1148887173", + "1.1079920864", + "1.1598108377", + "1.0634867265", + "1.0088160681", + "1.026629799", + "0.9893744032", + "1.0217741307", + "1.1050048915", + "1.1182472477", + "1.1331634751", + "1.1483998823", + "1.0621684778", + "0.9945575269", + "1.0549402448", + "1.1276445391", + "0.9734790339", + "1.002337636", + "1.0084598846", + "1.0652492565", + "1.0185793746", + "1.0250930204", + "1.0298753664", + "1.0111240057", + "1.0373705526", + "1.1046482546", + "1.1112024188", + "1.1389879338", + "1.151990924", + "1.148611224", + "1.0272481436", + "1.0542924507", + "1.0175814952", + "1.0229987137", + "1.0749833256", + "1.1072965469", + "1.0992319253", + "1.1076473887", + "1.094742046", + "1.08184896", + "1.086395448", + "1.1400207399", + "1.1954065613", + "1.2921638825", + "1.2052883004", + "1.2046579955", + "1.2324837472", + "1.1698713875", + "1.2367175068", + "1.2317635803", + "1.1967384796", + "1.2060019453", + "1.1012880642", + "1.3928451295", + "1.3189998208", + "1.3281888412", + "1.2556984689", + "1.2679893105", + "1.257604211", + "1.3598078201", + "1.2870394579", + "1.3252270728", + "1.319309947", + "1.297194429", + "1.2264216425", + "1.229166486", + "1.2738250361", + "1.2675857945", + "1.2721745951", + "1.2375730073", + "1.2291539828", + "1.2211171414", + "1.2807662629", + "1.239594907", + "1.2472636094", + "1.2177844382", + "1.1705313579", + "1.2740940102", + "1.2121781213", + "1.2053114766", + "1.2255397085", + "1.3016839661", + "1.3139555247", + "1.3225443879", + "1.3176566193", + "1.3114518929", + "1.3012920981", + "1.3003102093", + "1.2936571274", + "1.4118520049", + "1.39273528", + "1.2666703999", + "1.3159557429", + "1.315883061", + "1.3095238326", + "1.3120366031", + "1.3781191032", + "1.3726690808", + "1.3275475414", + "1.3135121978", + "1.3108592957", + "1.2993632117", + "1.3180966054", + "1.2865729812", + "1.2775288309", + "1.273367271", + "1.2889279649", + "1.2843982758", + "1.2752963281", + "1.2818662425", + "1.2965415563", + "1.3112921288", + "1.3202264956", + "1.3466911833", + "1.2982217908", + "1.3222335585", + "1.3331585821", + "1.2768469367", + "1.3311666758", + "1.3060988235", + "1.2820362344", + "1.2815374636", + "1.2892307807", + "1.283195671", + "1.2563277479", + "1.264272806", + "1.2674150154", + "1.2386952999" + ] + }, + "essential_compounds": [ + "26dap_M", + "C02528", + "ac", + "acald", + "acgam", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "arab_L", + "arbt", + "arg_L", + "arsenb", + "asn_L", + "asp_L", + "but", + "ca2", + "cd2", + "cellb", + "cgly", + "cholate", + "cl", + "co2", + "cobalt2", + "csn", + "cu2", + "cys_L", + "dgchol", + "etoh", + "fe2", + "fe3", + "for", + "gal", + "gchola", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "h2", + "h2o", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "k", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "malt", + "man", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "na1", + "nac", + "nh4", + "o2", + "pb", + "phe_L", + "pi", + "pnto_R", + "pro_L", + "ptrc", + "pydx", + "pyr", + "ribflv", + "salcn", + "ser_L", + "so4", + "spmd", + "taur", + "tchola", + "tdchola", + "thm", + "thr_L", + "trp_L", + "tyr_L", + "ura", + "urea", + "val_L", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_444.json b/agents/agora/agent_444.json new file mode 100644 index 0000000000000000000000000000000000000000..9e3b07557a8dd174758d794ef037a85cb25d77a2 --- /dev/null +++ b/agents/agora/agent_444.json @@ -0,0 +1,940 @@ +{ + "id": 444, + "name": "Haemophilus_sputorum_CCUG_13788", + "N_R": 1411, + "taxonomy": { + "k": 444, + "tax_distance": [ + "2.3935877186", + "1.9757098513", + "1.9690106222", + "2.1955933293", + "1.8769932554", + "1.9221219423", + "1.9034166445", + "1.9004740502", + "1.9644556485", + "1.8828115566", + "1.89987626", + "2.0079985738", + "1.9810163521", + "2.20903031", + "2.2573871271", + "2.2877196377", + "2.1680692398", + "2.1769933566", + "2.2124678322", + "1.7454521482", + "1.6807811715", + "1.4302599128", + "1.3636094804", + "1.2421298037", + "1.0679505249", + "1.0621393168", + "1.0587847454", + "1.0611457998", + "1.0453795098", + "1.0366937469", + "1.039144653", + "1.1407305891", + "1.1502683919", + "1.1466344819", + "1.1623305505", + "1.1308289705", + "1.1535749146", + "1.1718808261", + "1.1528488631", + "1.4457895221", + "1.1906311434", + "1.1092700874", + "1.1160353936", + "1.1186429737", + "1.1154112317", + "1.1183846134", + "1.1134860085", + "1.1138710438", + "1.108056133", + "1.1000949434", + "1.0416727654", + "1.0471851654", + "1.0414443321", + "1.0135980615", + "1.0201198056", + "1.0492218028", + "1.023144916", + "1.0211288884", + "1.041883294", + "1.0395433993", + "1.0228015718", + "1.0481523434", + "1.0502271332", + "1.04889624", + "1.0632874575", + "1.0650096194", + "1.0650096194", + "1.0716552021", + "1.0716552021", + "1.0716552021", + "1.0716552021", + "1.0716552021", + "1.0716552021", + "1.0716552021", + "1.0716552021", + "1.0675758394", + "1.0679215766", + "1.061489869", + "1.0719823436", + "1.0710771017", + "1.0671789321", + "1.0654362585", + "1.0667548283", + "1.0632529478", + "1.0581751995", + "1.0615203251", + "1.0669660919", + "1.0624279002", + "1.0474279441", + "1.055799059", + "1.0505236738", + "1.0666716148", + "1.0619743256", + "1.0661078949", + "1.0440681843", + "1.0386680005", + "1.0527343556", + "1.0633947646", + "1.0801918076", + "1.0626015174", + "1.0526063989", + "1.0512885813", + "1.0320382014", + "1.0449166904", + "1.1037891354", + "1.0986372237", + "1.165533481", + "1.131694225", + "1.0688855842", + "1.072611841", + "1.0753453081", + "1.0682412266", + "1.0682412266", + "1.0496173244", + "1.0525214707", + "1.044420954", + "1.0799466527", + "1.0167241032", + "0.9946331898", + "1.0124975461", + "0.9992265508", + "0.9996521432", + "1.1179038568", + "1.1250943076", + "1.1465353205", + "0.9511316048", + "1.1208805581", + "1.1275557922", + "1.1121926999", + "1.1318267051", + "1.1210137911", + "1.1260802774", + "1.1175839998", + "1.1106338947", + "1.1015041976", + "1.102162318", + "1.1210762412", + "1.0941947973", + "1.0762305868", + "1.1701185277", + "1.1714924014", + "1.1408039891", + "1.1983836797", + "1.1359622672", + "1.14145621", + "1.1384951849", + "1.16320217", + "1.1523797212", + "1.0605366492", + "1.0316265597", + "0.9928154997", + "0.9707142065", + "0.9620724002", + "0.9569522091", + "0.9938238348", + "0.9963189607", + "0.9681308918", + "0.9564929379", + "0.9600794469", + "1.0290325577", + "1.0357409398", + "1.0053699932", + "1.1292880664", + "1.123773171", + "1.1261142222", + "1.083837296", + "1.0799833165", + "1.1178898902", + "1.1097130759", + "1.0784710534", + "1.0800304121", + "1.0980504058", + "1.0547456111", + "1.0439094821", + "1.0450700346", + "1.078556376", + "1.0667328233", + "1.0481059661", + "1.0670945884", + "1.0484265897", + "1.0622415319", + "1.0564589609", + "1.0553905789", + "1.0759490306", + "1.0717364832", + "1.0546174378", + "1.0888458118", + "1.0736115701", + "1.0787238791", + "1.0781171936", + "1.0425155632", + "1.038495355", + "1.0230280034", + "1.0413745086", + "1.0383081338", + "1.01261654", + "0.9956037921", + "0.9902961412", + "0.9950379258", + "0.9941793151", + "1.026945275", + "1.0259646132", + "1.0500044108", + "1.0278953838", + "0.9883873918", + "0.9915518026", + "1.0166136946", + "1.0129048105", + "0.9886541938", + "0.9811968439", + "0.9835501032", + "0.9927276381", + "0.9184935412", + "0.961096642", + "0.9453928713", + "0.9392311081", + "0.9329508633", + "0.9208482457", + "0.9240185851", + "0.9661906745", + "1.4005825057", + "1.4853607048", + "1.3978961297", + "1.3830784176", + "1.3614057848", + "0.9150834437", + "0.9338878497", + "0.9838207148", + "0.9454599628", + "0.9606971658", + "1.0742343034", + "1.0280049105", + "1.0496565847", + "1.0083232386", + "0.9216615501", + "0.934043893", + "0.9405349642", + "1.000961501", + "0.9921619684", + "0.9902432374", + "1.0162455185", + "1.0135530829", + "1.0047850273", + "1.0363056509", + "1.0443891154", + "1.0285778422", + "1.0019595924", + "0.9966140193", + "1.0020246952", + "0.990731554", + "0.9357006592", + "0.9407854811", + "0.9400302576", + "0.9868418421", + "0.9422715627", + "0.9247233643", + "1.0021481705", + "0.9554155307", + "0.9304980682", + "0.9435335594", + "0.9141490458", + "0.8793626876", + "0.9634507234", + "0.9658045098", + "0.9705817195", + "0.9759273175", + "0.9416262917", + "1.002282041", + "1.0091181564", + "1.0056291539", + "1.0182942193", + "1.0043781765", + "0.9841622703", + "0.9755615016", + "1.0222133698", + "1.0414916425", + "1.0921706624", + "0.9350930462", + "0.9042657521", + "0.997271466", + "0.9962547661", + "0.9834756904", + "0.9404004033", + "1.0052237175", + "0.9961669653", + "0.9988192276", + "1.0299585329", + "0.9716173997", + "0.9568836969", + "0.9385085686", + "0.9668242073", + "0.938331282", + "0.9934771993", + "1.0244705993", + "1.0471034471", + "1.0037872701", + "0.9751334816", + "0.9953803783", + "0.9751339899", + "0.961520015", + "0.9262649441", + "0.9612145036", + "0.8923040277", + "0.9095693987", + "0.9923781097", + "0.9807434489", + "0.9778450226", + "0.9879993298", + "0.9963622153", + "0.9856848541", + "0.9976254217", + "0.9860919642", + "0.9836304576", + "0.952041326", + "0.9580362318", + "0.964294229", + "0.9514486836", + "0.9849873205", + "0.9172165322", + "0.9757144725", + "0.9728592399", + "0.9630997724", + "0.962324896", + "0.9884670208", + "0.965075784", + "0.934769646", + "0.8494415466", + "0.8612460914", + "0.8622633673", + "0.8062865901", + "0.8184135106", + "0.8151251086", + "0.7964509095", + "0.8051328612", + "0.8010920743", + "0.7911289245", + "0.8169299511", + "0.8136186144", + "0.7769893361", + "0.7955277688", + "0.7532865098", + "0.7559654486", + "0.7699558639", + "0.7714569736", + "0.7581271285", + "0.7476057344", + "0.7743601667", + "0.7602832196", + "0.7202769225", + "0.7276404581", + "0.8972080216", + "0.7175415128", + "0.7220858671", + "0.725689641", + "0.7216370328", + "0.6887550061", + "0.7185636809", + "0.7386229231", + "0.7406156468", + "0.7386980474", + "0.7220149584", + "0.7208550288", + "0.686618619", + "0.6888944205", + "0.814777814", + "0.8259721701", + "0.7122589458", + "0.7179163576", + "0.707987666", + "0.6721194854", + "0.6977278823", + "0.6884627678", + "0.68059802", + "0.6797440896", + "0.6872686455", + "0.6812611717", + "0.7003300906", + "0.6942537738", + "0.7059761246", + "0.7007433488", + "0.6875270996", + "0.6755933979", + "0.6852541238", + "0.6811006395", + "0.6870029421", + "0.6790545973", + "0.6544940616", + "0.6639070281", + "0.6577386127", + "0.6857698003", + "0.6834648527", + "0.6757457728", + "0.6895768956", + "0.7022690063", + "0.733187979", + "0.7368118779", + "0.7255987347", + "0.7416491326", + "0.7221990448", + "0.7186223437", + "0.7355394026", + "0.7253403944", + "0.7298991662", + "0.7379521879", + "0.7237373514", + "0.7155621448", + "0.7756531243", + "0.752115351", + "0.752432377", + "0.7530757909", + "0.7475831962", + "0.7376885721", + "0.7978656485", + "0.7687745156", + "0.6910172816", + "0.709832301", + "0.7295980592", + "0.7057077495", + "0.6874111242", + "0.6688812383", + "0.6851864298", + "0.69254283", + "0.674941007", + "0.7304490728", + "0.7366203299", + "0.7403379874", + "0.775600079", + "0.729611697", + "0.7552875047", + "0.6402512417", + "0.6231328036", + "0.7261605697", + "0.7371492583", + "0.6712205488", + "0.6724974252", + "0.6306805773", + "0.6470997483", + "0.5778544958", + "0.6015936252", + "0.589018164", + "0.5668153443", + "0.229485513", + "0.2357848486", + "0.0", + "0.2798694129", + "0.2783954152", + "0.2959340146", + "0.3057331541", + "0.3546617041", + "0.3900858672", + "0.3648986879", + "0.3455868857", + "0.3293164175", + "0.3411150182", + "0.340808468", + "0.3716243634", + "0.3719820592", + "0.4749539425", + "0.6952006217", + "0.6997842629", + "0.7095278389", + "0.689289383", + "0.6509847028", + "0.7203781996", + "0.7013418761", + "0.7062035643", + "0.6429917179", + "0.6747038313", + "0.68333989", + "0.6949976442", + "0.6774331047", + "0.6640687891", + "0.6284358075", + "0.6275214351", + "0.6339881249", + "0.7098264076", + "0.6899429199", + "0.7653258183", + "0.7193362652", + "0.6736786885", + "0.6798837254", + "0.6848240148", + "0.6795153561", + "0.6737137551", + "0.7011540241", + "0.6832975603", + "0.6752480667", + "0.6662350997", + "0.6881725767", + "0.6826707319", + "0.6843046239", + "0.6482545328", + "0.6504110042", + "0.6235367913", + "0.7068004818", + "0.6825387055", + "0.6678968919", + "0.648165546", + "0.7838892367", + "0.787149045", + "0.8150560263", + "0.7696918473", + "0.7737951633", + "0.7878436428", + "0.8015601086", + "0.8251993298", + "0.7663946381", + "0.7444084702", + "0.7730147027", + "0.7412653581", + "0.7445791834", + "0.7575464302", + "0.7379010653", + "0.7451634095", + "0.7307985566", + "0.7267101277", + "0.8084537604", + "0.800645226", + "0.7549644165", + "0.7757313792", + "0.7724121085", + "0.825621468", + "0.7530198223", + "0.7372310454", + "0.7548635723", + "0.755686688", + "0.7571165502", + "0.7825375202", + "0.7944621696", + "0.8529261898", + "0.856312584", + "0.8393582615", + "0.8245903992", + "0.8053642663", + "0.774498387", + "1.1357804488", + "1.1602209253", + "1.1240656468", + "1.1347162515", + "1.111960717", + "1.0982090961", + "1.1885574816", + "1.2174016667", + "1.2185195889", + "1.1427887243", + "1.140320849", + "1.1403875646", + "1.1341776704", + "1.152264879", + "1.1282820232", + "1.1041341927", + "1.0669310828", + "1.0750740804", + "1.0532555018", + "1.0739871513", + "1.032271581", + "1.0467591139", + "1.0484115401", + "1.0540273811", + "1.0465345657", + "1.0460691666", + "1.0433300187", + "1.0336323916", + "1.0513396139", + "1.0314859783", + "1.0339331292", + "1.0296732948", + "1.0443317418", + "1.0634318439", + "1.0067297252", + "1.0291304994", + "1.0371681302", + "1.0363102206", + "1.0195668752", + "1.0087890357", + "1.0089201934", + "1.013612841", + "1.0169296148", + "1.0496502268", + "1.0808523153", + "1.0757803374", + "0.9997220669", + "1.0006133519", + "0.9958650402", + "1.0019142903", + "0.9229459723", + "0.8199026552", + "0.8335351682", + "1.0727622699", + "1.2806128957", + "1.0342534588", + "1.0947687443", + "1.0961606933", + "1.0720240859", + "1.0797025891", + "1.1024229801", + "1.0922245122", + "1.1096336082", + "1.1107876696", + "1.1073503396", + "1.1070113812", + "1.1337958535", + "1.1037533358", + "1.1073926143", + "1.1112171958", + "1.1114367296", + "1.0747893652", + "1.0796656804", + "1.1007117205", + "1.0811639075", + "1.0885046546", + "1.0404160692", + "1.0328641635", + "1.0635767445", + "1.0597524975", + "1.0721015897", + "1.0769592255", + "1.0716038712", + "1.071167301", + "1.0622184298", + "1.07423485", + "1.0518841087", + "1.0678326273", + "1.0765453664", + "1.0722600845", + "1.0804576509", + "1.0957138724", + "1.0911832199", + "1.0322775159", + "1.0700280261", + "1.0605294227", + "1.022623494", + "1.2927988215", + "1.3254354793", + "1.29091204", + "1.2995908935", + "1.2734813497", + "1.0872715098", + "0.9405417379", + "0.9325743126", + "0.9859094237", + "0.949181509", + "0.9542220001", + "0.951991402", + "0.9396449813", + "0.9445875824", + "0.8978372979", + "0.953132774", + "0.9474950227", + "0.9929804456", + "0.9710756238", + "0.9634303876", + "0.9507605136", + "0.8636493783", + "0.8675669944", + "0.9757217196", + "0.9582777233", + "0.9622250358", + "0.9570373848", + "0.929621252", + "1.018696617", + "0.9662661831", + "0.966312558", + "1.0633614279", + "1.0939083907", + "1.0493202044", + "1.0563125758", + "1.029076231", + "1.0344640292", + "1.0336311513", + "1.0257978357", + "0.9684184538", + "1.1170322061", + "1.1711971736", + "1.1382200969", + "1.127418496", + "1.1347244106", + "1.075319572", + "1.0879204029", + "1.0949780159", + "1.0902159836", + "1.1395790251", + "1.1455658973", + "1.1549647464", + "1.1670561266", + "1.1022321666", + "1.1440208877", + "1.1421524714", + "1.0685669092", + "1.0666946382", + "1.0948904119", + "1.087993781", + "1.1398125323", + "1.0434884211", + "0.9888177627", + "1.0066314936", + "0.9693760978", + "1.0017758253", + "1.0850065861", + "1.0982489423", + "1.1131651697", + "1.1284015769", + "1.0421701724", + "0.9745592215", + "1.0349419394", + "1.1076462337", + "0.9534807285", + "0.9823393306", + "0.9884615792", + "1.0452509511", + "0.9985810692", + "1.005094715", + "1.009877061", + "0.9911257003", + "1.0173722472", + "1.0846499492", + "1.0912041134", + "1.1189896284", + "1.1319926186", + "1.1286129186", + "1.0072498382", + "1.0342941453", + "0.9975831898", + "1.0030004083", + "1.0549850202", + "1.0872982415", + "1.0792336199", + "1.0876490833", + "1.0747437406", + "1.0618506546", + "1.0663971426", + "1.1200224345", + "1.1754082559", + "1.2721655771", + "1.185289995", + "1.1846596901", + "1.2124854418", + "1.1498730821", + "1.2167192014", + "1.2117652749", + "1.1767401742", + "1.1860036399", + "1.0812897588", + "1.3728468241", + "1.2990015154", + "1.3081905358", + "1.2357001635", + "1.2479910051", + "1.2376059056", + "1.3398095147", + "1.2670411525", + "1.3052287674", + "1.2993116416", + "1.2771961236", + "1.2064233371", + "1.2091681806", + "1.2538267307", + "1.2475874891", + "1.2521762897", + "1.2175747019", + "1.2091556774", + "1.201118836", + "1.2607679575", + "1.2195966016", + "1.227265304", + "1.1977861328", + "1.1505330525", + "1.2540957048", + "1.1921798159", + "1.1853131712", + "1.2055414031", + "1.2816856607", + "1.2939572193", + "1.3025460825", + "1.2976583139", + "1.2914535875", + "1.2812937927", + "1.2803119039", + "1.273658822", + "1.3918536995", + "1.3727369746", + "1.2466720945", + "1.2959574375", + "1.2958847556", + "1.2895255272", + "1.2920382977", + "1.3581207978", + "1.3526707754", + "1.307549236", + "1.2935138924", + "1.2908609903", + "1.2793649063", + "1.2980983", + "1.2665746758", + "1.2575305255", + "1.2533689656", + "1.2689296595", + "1.2643999704", + "1.2552980227", + "1.2618679371", + "1.2765432509", + "1.2912938234", + "1.3002281902", + "1.3266928779", + "1.2782234854", + "1.3022352531", + "1.3131602767", + "1.2568486313", + "1.3111683704", + "1.2861005181", + "1.262037929", + "1.2615391582", + "1.2692324753", + "1.2631973656", + "1.2363294425", + "1.2442745006", + "1.24741671", + "1.2186969945" + ] + }, + "essential_compounds": [ + "12dgr180", + "26dap_M", + "2dmmq8", + "2obut", + "ac", + "acald", + "ade", + "adocbl", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "amp", + "arg_L", + "asn_L", + "aso3", + "aso4", + "asp_L", + "btn", + "but", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cgly", + "cl", + "co2", + "cobalt2", + "cro4", + "csn", + "cu2", + "cys_L", + "cytd", + "dcyt", + "dgsn", + "etoh", + "fe2", + "fe3", + "fol", + "for", + "gcald", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gua", + "h2", + "h2o", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "ins", + "isobut", + "isocapr", + "isoval", + "k", + "lac_D", + "leu_L", + "met_L", + "metala", + "mg2", + "mn2", + "mqn8", + "na1", + "nac", + "nh4", + "o2", + "ocdca", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "pnto_R", + "pro_L", + "ptrc", + "q8", + "ribflv", + "ser_L", + "sheme", + "so4", + "spmd", + "succ", + "thm", + "thr_L", + "thymd", + "trp_L", + "tyr_L", + "ura", + "uri", + "val_L", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_445.json b/agents/agora/agent_445.json new file mode 100644 index 0000000000000000000000000000000000000000..d6e9331990b18054d5b78987bffe7354f9bbecdd --- /dev/null +++ b/agents/agora/agent_445.json @@ -0,0 +1,954 @@ +{ + "id": 445, + "name": "Hafnia_alvei_ATCC_51873", + "N_R": 1363, + "taxonomy": { + "k": 445, + "tax_distance": [ + "2.4061161645", + "1.9882382972", + "1.9815390681", + "2.2081217752", + "1.8895217013", + "1.9346503882", + "1.9159450904", + "1.9130024961", + "1.9769840944", + "1.8953400025", + "1.9124047059", + "2.0205270197", + "1.993544798", + "2.2215587559", + "2.269915573", + "2.3002480836", + "2.1805976857", + "2.1895218025", + "2.2249962781", + "1.7579805941", + "1.6933096174", + "1.4427883587", + "1.3761379263", + "1.2546582496", + "1.0804789708", + "1.0746677627", + "1.0713131913", + "1.0736742457", + "1.0579079557", + "1.0492221928", + "1.0516730989", + "1.153259035", + "1.1627968378", + "1.1591629278", + "1.1748589964", + "1.1433574164", + "1.1661033605", + "1.184409272", + "1.165377309", + "1.458317968", + "1.2031595893", + "1.1217985333", + "1.1285638395", + "1.1311714196", + "1.1279396776", + "1.1309130593", + "1.1260144544", + "1.1263994897", + "1.1205845789", + "1.1126233893", + "1.0542012113", + "1.0597136113", + "1.053972778", + "1.0261265074", + "1.0326482515", + "1.0617502487", + "1.0356733619", + "1.0336573343", + "1.0544117399", + "1.0520718452", + "1.0353300177", + "1.0606807893", + "1.0627555791", + "1.0614246859", + "1.0758159034", + "1.0775380653", + "1.0775380653", + "1.084183648", + "1.084183648", + "1.084183648", + "1.084183648", + "1.084183648", + "1.084183648", + "1.084183648", + "1.084183648", + "1.0801042853", + "1.0804500225", + "1.0740183149", + "1.0845107895", + "1.0836055476", + "1.079707378", + "1.0779647044", + "1.0792832742", + "1.0757813937", + "1.0707036454", + "1.074048771", + "1.0794945378", + "1.0749563461", + "1.05995639", + "1.0683275049", + "1.0630521197", + "1.0792000607", + "1.0745027715", + "1.0786363408", + "1.0565966302", + "1.0511964464", + "1.0652628015", + "1.0759232105", + "1.0927202535", + "1.0751299633", + "1.0651348448", + "1.0638170272", + "1.0445666473", + "1.0574451363", + "1.1163175813", + "1.1111656696", + "1.1780619269", + "1.1442226709", + "1.0814140301", + "1.0851402869", + "1.087873754", + "1.0807696725", + "1.0807696725", + "1.0621457703", + "1.0650499166", + "1.0569493999", + "1.0924750986", + "1.0292525491", + "1.0071616357", + "1.025025992", + "1.0117549967", + "1.0121805891", + "1.1304323027", + "1.1376227535", + "1.1590637664", + "0.9636600507", + "1.133409004", + "1.1400842381", + "1.1247211458", + "1.144355151", + "1.133542237", + "1.1386087233", + "1.1301124457", + "1.1231623406", + "1.1140326435", + "1.1146907639", + "1.1336046871", + "1.1067232432", + "1.0887590327", + "1.1826469736", + "1.1840208473", + "1.153332435", + "1.2109121256", + "1.1484907131", + "1.1539846559", + "1.1510236308", + "1.1757306159", + "1.1649081671", + "1.0730650951", + "1.0441550056", + "1.0053439456", + "0.9832426524", + "0.9746008461", + "0.969480655", + "1.0063522807", + "1.0088474066", + "0.9806593377", + "0.9690213838", + "0.9726078928", + "1.0415610036", + "1.0482693857", + "1.0178984391", + "1.1418165123", + "1.1363016169", + "1.1386426681", + "1.0963657419", + "1.0925117624", + "1.1304183361", + "1.1222415218", + "1.0909994993", + "1.092558858", + "1.1105788517", + "1.067274057", + "1.056437928", + "1.0575984805", + "1.0910848219", + "1.0792612692", + "1.060634412", + "1.0796230343", + "1.0609550356", + "1.0747699778", + "1.0689874068", + "1.0679190248", + "1.0884774765", + "1.0842649291", + "1.0671458837", + "1.1013742577", + "1.086140016", + "1.091252325", + "1.0906456395", + "1.0550440091", + "1.0510238009", + "1.0355564493", + "1.0539029545", + "1.0508365797", + "1.0251449859", + "1.008132238", + "1.0028245871", + "1.0075663717", + "1.006707761", + "1.0394737209", + "1.0384930591", + "1.0625328567", + "1.0404238297", + "1.0009158377", + "1.0040802485", + "1.0291421405", + "1.0254332564", + "1.0011826397", + "0.9937252898", + "0.9960785491", + "1.005256084", + "0.9310219871", + "0.9736250879", + "0.9579213172", + "0.951759554", + "0.9454793092", + "0.9333766916", + "0.936547031", + "0.9787191204", + "1.4131109516", + "1.4978891507", + "1.4104245756", + "1.3956068635", + "1.3739342307", + "0.9276118896", + "0.9464162956", + "0.9963491607", + "0.9579884087", + "0.9732256117", + "1.0867627493", + "1.0405333564", + "1.0621850306", + "1.0208516845", + "0.934189996", + "0.9465723389", + "0.9530634101", + "1.0134899469", + "1.0046904143", + "1.0027716833", + "1.0287739644", + "1.0260815288", + "1.0173134732", + "1.0488340968", + "1.0569175613", + "1.0411062881", + "1.0144880383", + "1.0091424652", + "1.0145531411", + "1.0032599999", + "0.9482291051", + "0.953313927", + "0.9525587035", + "0.999370288", + "0.9548000086", + "0.9372518102", + "1.0146766164", + "0.9679439766", + "0.9430265141", + "0.9560620053", + "0.9266774917", + "0.8918911335", + "0.9759791693", + "0.9783329557", + "0.9831101654", + "0.9884557634", + "0.9541547376", + "1.0148104869", + "1.0216466023", + "1.0181575998", + "1.0308226652", + "1.0169066224", + "0.9966907162", + "0.9880899475", + "1.0347418157", + "1.0540200884", + "1.1046991083", + "0.9476214921", + "0.916794198", + "1.0097999119", + "1.008783212", + "0.9960041363", + "0.9529288492", + "1.0177521634", + "1.0086954112", + "1.0113476735", + "1.0424869788", + "0.9841458456", + "0.9694121428", + "0.9510370145", + "0.9793526532", + "0.9508597279", + "1.0060056452", + "1.0369990452", + "1.059631893", + "1.016315716", + "0.9876619275", + "1.0079088242", + "0.9876624358", + "0.9740484609", + "0.93879339", + "0.9737429495", + "0.9048324736", + "0.9220978446", + "1.0049065556", + "0.9932718948", + "0.9903734685", + "1.0005277757", + "1.0088906612", + "0.9982133", + "1.0101538676", + "0.9986204101", + "0.9961589035", + "0.9645697719", + "0.9705646777", + "0.9768226749", + "0.9639771295", + "0.9975157664", + "0.9297449781", + "0.9882429184", + "0.9853876858", + "0.9756282183", + "0.9748533419", + "1.0009954667", + "0.9776042299", + "0.9472980919", + "0.8619699925", + "0.8737745373", + "0.8747918132", + "0.818815036", + "0.8309419565", + "0.8276535545", + "0.8089793554", + "0.8176613071", + "0.8136205202", + "0.8036573704", + "0.829458397", + "0.8261470603", + "0.789517782", + "0.8080562147", + "0.7658149557", + "0.7684938945", + "0.7824843098", + "0.7839854195", + "0.7706555744", + "0.7601341803", + "0.7868886126", + "0.7728116655", + "0.7328053684", + "0.740168904", + "0.9097364675", + "0.7300699587", + "0.734614313", + "0.7382180869", + "0.7341654787", + "0.701283452", + "0.7310921268", + "0.751151369", + "0.7531440927", + "0.7512264933", + "0.7345434043", + "0.7333834747", + "0.6991470649", + "0.7014228664", + "0.8273062599", + "0.838500616", + "0.7247873917", + "0.7304448035", + "0.7205161119", + "0.6846479313", + "0.7102563282", + "0.7009912137", + "0.6931264659", + "0.6922725355", + "0.6997970914", + "0.6937896176", + "0.7128585365", + "0.7067822197", + "0.7185045705", + "0.7132717947", + "0.7000555455", + "0.6881218438", + "0.6977825697", + "0.6936290854", + "0.699531388", + "0.6915830432", + "0.6670225075", + "0.676435474", + "0.6702670586", + "0.6982982462", + "0.6959932986", + "0.6882742187", + "0.7021053415", + "0.7147974522", + "0.7457164249", + "0.7493403238", + "0.7381271806", + "0.7541775785", + "0.7347274907", + "0.7311507896", + "0.7480678485", + "0.7378688403", + "0.7424276121", + "0.7504806338", + "0.7362657973", + "0.7280905907", + "0.7881815702", + "0.7646437969", + "0.7649608229", + "0.7656042368", + "0.7601116421", + "0.750217018", + "0.8103940944", + "0.7813029615", + "0.7035457275", + "0.7223607469", + "0.7421265051", + "0.7182361954", + "0.6999395701", + "0.6814096842", + "0.6977148757", + "0.7050712759", + "0.6874694529", + "0.7429775187", + "0.7491487758", + "0.7528664333", + "0.7881285249", + "0.7421401429", + "0.7678159506", + "0.6527796876", + "0.6356612495", + "0.7386890156", + "0.7496777042", + "0.6837489947", + "0.6850258711", + "0.6432090232", + "0.6596281942", + "0.5903829417", + "0.6141220711", + "0.6015466099", + "0.5793437902", + "0.2935683827", + "0.2998677183", + "0.2798694129", + "0.0", + "0.0788399201", + "0.3084624605", + "0.3182616", + "0.36719015", + "0.4026143131", + "0.3774271338", + "0.3581153316", + "0.3418448634", + "0.3536434641", + "0.3533369139", + "0.3841528093", + "0.3845105051", + "0.4874823884", + "0.7077290676", + "0.7123127088", + "0.7220562848", + "0.7018178289", + "0.6635131487", + "0.7329066455", + "0.713870322", + "0.7187320102", + "0.6555201638", + "0.6872322772", + "0.6958683359", + "0.7075260901", + "0.6899615506", + "0.676597235", + "0.6409642534", + "0.640049881", + "0.6465165708", + "0.7223548535", + "0.7024713658", + "0.7778542642", + "0.7318647111", + "0.6862071344", + "0.6924121713", + "0.6973524607", + "0.692043802", + "0.686242201", + "0.71368247", + "0.6958260062", + "0.6877765126", + "0.6787635456", + "0.7007010226", + "0.6951991778", + "0.6968330698", + "0.6607829787", + "0.6629394501", + "0.6360652372", + "0.7193289277", + "0.6950671514", + "0.6804253378", + "0.6606939919", + "0.7964176826", + "0.7996774909", + "0.8275844722", + "0.7822202932", + "0.7863236092", + "0.8003720887", + "0.8140885545", + "0.8377277757", + "0.778923084", + "0.7569369161", + "0.7855431486", + "0.753793804", + "0.7571076293", + "0.7700748761", + "0.7504295112", + "0.7576918554", + "0.7433270025", + "0.7392385736", + "0.8209822063", + "0.8131736719", + "0.7674928624", + "0.7882598251", + "0.7849405544", + "0.8381499139", + "0.7655482682", + "0.7497594913", + "0.7673920182", + "0.7682151339", + "0.7696449961", + "0.7950659661", + "0.8069906155", + "0.8654546357", + "0.8688410299", + "0.8518867074", + "0.8371188451", + "0.8178927122", + "0.7870268329", + "1.1483088947", + "1.1727493712", + "1.1365940927", + "1.1472446974", + "1.1244891629", + "1.110737542", + "1.2010859275", + "1.2299301126", + "1.2310480348", + "1.1553171702", + "1.1528492949", + "1.1529160105", + "1.1467061163", + "1.1647933249", + "1.1408104691", + "1.1166626386", + "1.0794595287", + "1.0876025263", + "1.0657839477", + "1.0865155972", + "1.0448000269", + "1.0592875598", + "1.060939986", + "1.066555827", + "1.0590630116", + "1.0585976125", + "1.0558584646", + "1.0461608375", + "1.0638680598", + "1.0440144242", + "1.0464615751", + "1.0422017407", + "1.0568601877", + "1.0759602898", + "1.0192581711", + "1.0416589453", + "1.0496965761", + "1.0488386665", + "1.0320953211", + "1.0213174816", + "1.0214486393", + "1.0261412869", + "1.0294580607", + "1.0621786727", + "1.0933807612", + "1.0883087833", + "1.0122505128", + "1.0131417978", + "1.0083934861", + "1.0144427362", + "0.9354744182", + "0.8324311011", + "0.8460636141", + "1.0852907158", + "1.2931413416", + "1.0467819047", + "1.1072971902", + "1.1086891392", + "1.0845525318", + "1.092231035", + "1.114951426", + "1.1047529581", + "1.1221620541", + "1.1233161155", + "1.1198787855", + "1.1195398271", + "1.1463242994", + "1.1162817817", + "1.1199210602", + "1.1237456417", + "1.1239651755", + "1.0873178111", + "1.0921941263", + "1.1132401664", + "1.0936923534", + "1.1010331005", + "1.0529445151", + "1.0453926094", + "1.0761051904", + "1.0722809434", + "1.0846300356", + "1.0894876714", + "1.0841323171", + "1.0836957469", + "1.0747468757", + "1.0867632959", + "1.0644125546", + "1.0803610732", + "1.0890738123", + "1.0847885304", + "1.0929860968", + "1.1082423183", + "1.1037116658", + "1.0448059618", + "1.082556472", + "1.0730578686", + "1.0351519399", + "1.3053272674", + "1.3379639252", + "1.3034404859", + "1.3121193394", + "1.2860097956", + "1.0997999557", + "0.9530701838", + "0.9451027585", + "0.9984378696", + "0.9617099549", + "0.966750446", + "0.9645198479", + "0.9521734272", + "0.9571160283", + "0.9103657438", + "0.9656612199", + "0.9600234686", + "1.0055088915", + "0.9836040697", + "0.9759588335", + "0.9632889595", + "0.8761778242", + "0.8800954403", + "0.9882501655", + "0.9708061692", + "0.9747534817", + "0.9695658307", + "0.9421496979", + "1.0312250629", + "0.978794629", + "0.9788410039", + "1.0758898738", + "1.1064368366", + "1.0618486503", + "1.0688410217", + "1.0416046769", + "1.0469924751", + "1.0461595972", + "1.0383262816", + "0.9809468997", + "1.129560652", + "1.1837256195", + "1.1507485428", + "1.1399469419", + "1.1472528565", + "1.0878480179", + "1.1004488488", + "1.1075064618", + "1.1027444295", + "1.152107471", + "1.1580943432", + "1.1674931923", + "1.1795845725", + "1.1147606125", + "1.1565493336", + "1.1546809173", + "1.0810953551", + "1.0792230841", + "1.1074188578", + "1.1005222269", + "1.1523409782", + "1.056016867", + "1.0013462086", + "1.0191599395", + "0.9819045437", + "1.0143042712", + "1.097535032", + "1.1107773882", + "1.1256936156", + "1.1409300228", + "1.0546986183", + "0.9870876674", + "1.0474703853", + "1.1201746796", + "0.9660091744", + "0.9948677765", + "1.0009900251", + "1.057779397", + "1.0111095151", + "1.0176231609", + "1.0224055069", + "1.0036541462", + "1.0299006931", + "1.0971783951", + "1.1037325593", + "1.1315180743", + "1.1445210645", + "1.1411413645", + "1.0197782841", + "1.0468225912", + "1.0101116357", + "1.0155288542", + "1.0675134661", + "1.0998266874", + "1.0917620658", + "1.1001775292", + "1.0872721865", + "1.0743791005", + "1.0789255885", + "1.1325508804", + "1.1879367018", + "1.284694023", + "1.1978184409", + "1.197188136", + "1.2250138877", + "1.162401528", + "1.2292476473", + "1.2242937208", + "1.1892686201", + "1.1985320858", + "1.0938182047", + "1.38537527", + "1.3115299613", + "1.3207189817", + "1.2482286094", + "1.260519451", + "1.2501343515", + "1.3523379606", + "1.2795695984", + "1.3177572133", + "1.3118400875", + "1.2897245695", + "1.218951783", + "1.2216966265", + "1.2663551766", + "1.260115935", + "1.2647047356", + "1.2301031478", + "1.2216841233", + "1.2136472819", + "1.2732964034", + "1.2321250475", + "1.2397937499", + "1.2103145787", + "1.1630614984", + "1.2666241507", + "1.2047082618", + "1.1978416171", + "1.218069849", + "1.2942141066", + "1.3064856652", + "1.3150745284", + "1.3101867598", + "1.3039820334", + "1.2938222386", + "1.2928403498", + "1.2861872679", + "1.4043821454", + "1.3852654205", + "1.2592005404", + "1.3084858834", + "1.3084132015", + "1.3020539731", + "1.3045667436", + "1.3706492437", + "1.3651992213", + "1.3200776819", + "1.3060423383", + "1.3033894362", + "1.2918933522", + "1.3106267459", + "1.2791031217", + "1.2700589714", + "1.2658974115", + "1.2814581054", + "1.2769284163", + "1.2678264686", + "1.274396383", + "1.2890716968", + "1.3038222693", + "1.3127566361", + "1.3392213238", + "1.2907519313", + "1.314763699", + "1.3256887226", + "1.2693770772", + "1.3236968163", + "1.298628964", + "1.2745663749", + "1.2740676041", + "1.2817609212", + "1.2757258115", + "1.2488578884", + "1.2568029465", + "1.2599451559", + "1.2312254404" + ] + }, + "essential_compounds": [ + "12dgr180", + "26dap_M", + "2dmmq8", + "2obut", + "3mop", + "C02528", + "Lcyst", + "ac", + "acald", + "acgam", + "ade", + "adocbl", + "ala_L", + "amp", + "arab_L", + "arbt", + "arg_L", + "aso3", + "aso4", + "asp_L", + "btn", + "but", + "butso3", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellul", + "cgly", + "cholate", + "chor", + "cit", + "cl", + "co2", + "cobalt2", + "cro4", + "csn", + "cu2", + "cytd", + "dad_2", + "dcyt", + "dgchol", + "dgsn", + "ethso3", + "fe2", + "fe3", + "fol", + "for", + "fru", + "gal", + "galt", + "gam", + "gcald", + "gchola", + "glc_D", + "gln_L", + "gly", + "glyc", + "gthrd", + "gua", + "h2o", + "h2s", + "h", + "hexs", + "hg2", + "hxan", + "ile_L", + "ins", + "isetac", + "k", + "lac_D", + "lac_L", + "leu_L", + "lys_L", + "malt", + "man", + "met_D", + "met_L", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mops", + "mqn8", + "mso3", + "na1", + "nac", + "nh4", + "o2", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "ppa", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "q8", + "ribflv", + "salcn", + "sbt_D", + "ser_L", + "sheme", + "so4", + "spmd", + "succ", + "sucr", + "sulfac", + "taur", + "tchola", + "tdchola", + "thm", + "thr_L", + "thymd", + "tre", + "tsul", + "ura", + "uri", + "val_L", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_446.json b/agents/agora/agent_446.json new file mode 100644 index 0000000000000000000000000000000000000000..00e1a797c071c1dc5f758ab6ed3f02f983323e4e --- /dev/null +++ b/agents/agora/agent_446.json @@ -0,0 +1,954 @@ +{ + "id": 446, + "name": "Hafnia_alvei_BIDMC_31", + "N_R": 1239, + "taxonomy": { + "k": 446, + "tax_distance": [ + "2.4046421668", + "1.9867642995", + "1.9800650704", + "2.2066477775", + "1.8880477036", + "1.9331763905", + "1.9144710927", + "1.9115284984", + "1.9755100967", + "1.8938660048", + "1.9109307082", + "2.019053022", + "1.9920708003", + "2.2200847582", + "2.2684415753", + "2.2987740859", + "2.179123688", + "2.1880478048", + "2.2235222804", + "1.7565065964", + "1.6918356197", + "1.441314361", + "1.3746639286", + "1.2531842519", + "1.0790049731", + "1.073193765", + "1.0698391936", + "1.072200248", + "1.056433958", + "1.0477481951", + "1.0501991012", + "1.1517850373", + "1.1613228401", + "1.1576889301", + "1.1733849987", + "1.1418834187", + "1.1646293628", + "1.1829352743", + "1.1639033113", + "1.4568439703", + "1.2016855916", + "1.1203245356", + "1.1270898418", + "1.1296974219", + "1.1264656799", + "1.1294390616", + "1.1245404567", + "1.124925492", + "1.1191105812", + "1.1111493916", + "1.0527272136", + "1.0582396136", + "1.0524987803", + "1.0246525097", + "1.0311742538", + "1.060276251", + "1.0341993642", + "1.0321833366", + "1.0529377422", + "1.0505978475", + "1.03385602", + "1.0592067916", + "1.0612815814", + "1.0599506882", + "1.0743419057", + "1.0760640676", + "1.0760640676", + "1.0827096503", + "1.0827096503", + "1.0827096503", + "1.0827096503", + "1.0827096503", + "1.0827096503", + "1.0827096503", + "1.0827096503", + "1.0786302876", + "1.0789760248", + "1.0725443172", + "1.0830367918", + "1.0821315499", + "1.0782333803", + "1.0764907067", + "1.0778092765", + "1.074307396", + "1.0692296477", + "1.0725747733", + "1.0780205401", + "1.0734823484", + "1.0584823923", + "1.0668535072", + "1.061578122", + "1.077726063", + "1.0730287738", + "1.0771623431", + "1.0551226325", + "1.0497224487", + "1.0637888038", + "1.0744492128", + "1.0912462558", + "1.0736559656", + "1.0636608471", + "1.0623430295", + "1.0430926496", + "1.0559711386", + "1.1148435836", + "1.1096916719", + "1.1765879292", + "1.1427486732", + "1.0799400324", + "1.0836662892", + "1.0863997563", + "1.0792956748", + "1.0792956748", + "1.0606717726", + "1.0635759189", + "1.0554754022", + "1.0910011009", + "1.0277785514", + "1.005687638", + "1.0235519943", + "1.010280999", + "1.0107065914", + "1.128958305", + "1.1361487558", + "1.1575897687", + "0.962186053", + "1.1319350063", + "1.1386102404", + "1.1232471481", + "1.1428811533", + "1.1320682393", + "1.1371347256", + "1.128638448", + "1.1216883429", + "1.1125586458", + "1.1132167662", + "1.1321306894", + "1.1052492455", + "1.087285035", + "1.1811729759", + "1.1825468496", + "1.1518584373", + "1.2094381279", + "1.1470167154", + "1.1525106582", + "1.1495496331", + "1.1742566182", + "1.1634341694", + "1.0715910974", + "1.0426810079", + "1.0038699479", + "0.9817686547", + "0.9731268484", + "0.9680066573", + "1.004878283", + "1.0073734089", + "0.97918534", + "0.9675473861", + "0.9711338951", + "1.0400870059", + "1.046795388", + "1.0164244414", + "1.1403425146", + "1.1348276192", + "1.1371686704", + "1.0948917442", + "1.0910377647", + "1.1289443384", + "1.1207675241", + "1.0895255016", + "1.0910848603", + "1.109104854", + "1.0658000593", + "1.0549639303", + "1.0561244828", + "1.0896108242", + "1.0777872715", + "1.0591604143", + "1.0781490366", + "1.0594810379", + "1.0732959801", + "1.0675134091", + "1.0664450271", + "1.0870034788", + "1.0827909314", + "1.065671886", + "1.09990026", + "1.0846660183", + "1.0897783273", + "1.0891716418", + "1.0535700114", + "1.0495498032", + "1.0340824516", + "1.0524289568", + "1.049362582", + "1.0236709882", + "1.0066582403", + "1.0013505894", + "1.006092374", + "1.0052337633", + "1.0379997232", + "1.0370190614", + "1.061058859", + "1.038949832", + "0.99944184", + "1.0026062508", + "1.0276681428", + "1.0239592587", + "0.999708642", + "0.9922512921", + "0.9946045514", + "1.0037820863", + "0.9295479894", + "0.9721510902", + "0.9564473195", + "0.9502855563", + "0.9440053115", + "0.9319026939", + "0.9350730333", + "0.9772451227", + "1.4116369539", + "1.496415153", + "1.4089505779", + "1.3941328658", + "1.372460233", + "0.9261378919", + "0.9449422979", + "0.994875163", + "0.956514411", + "0.971751614", + "1.0852887516", + "1.0390593587", + "1.0607110329", + "1.0193776868", + "0.9327159983", + "0.9450983412", + "0.9515894124", + "1.0120159492", + "1.0032164166", + "1.0012976856", + "1.0272999667", + "1.0246075311", + "1.0158394755", + "1.0473600991", + "1.0554435636", + "1.0396322904", + "1.0130140406", + "1.0076684675", + "1.0130791434", + "1.0017860022", + "0.9467551074", + "0.9518399293", + "0.9510847058", + "0.9978962903", + "0.9533260109", + "0.9357778125", + "1.0132026187", + "0.9664699789", + "0.9415525164", + "0.9545880076", + "0.925203494", + "0.8904171358", + "0.9745051716", + "0.976858958", + "0.9816361677", + "0.9869817657", + "0.9526807399", + "1.0133364892", + "1.0201726046", + "1.0166836021", + "1.0293486675", + "1.0154326247", + "0.9952167185", + "0.9866159498", + "1.033267818", + "1.0525460907", + "1.1032251106", + "0.9461474944", + "0.9153202003", + "1.0083259142", + "1.0073092143", + "0.9945301386", + "0.9514548515", + "1.0162781657", + "1.0072214135", + "1.0098736758", + "1.0410129811", + "0.9826718479", + "0.9679381451", + "0.9495630168", + "0.9778786555", + "0.9493857302", + "1.0045316475", + "1.0355250475", + "1.0581578953", + "1.0148417183", + "0.9861879298", + "1.0064348265", + "0.9861884381", + "0.9725744632", + "0.9373193923", + "0.9722689518", + "0.9033584759", + "0.9206238469", + "1.0034325579", + "0.9917978971", + "0.9888994708", + "0.999053778", + "1.0074166635", + "0.9967393023", + "1.0086798699", + "0.9971464124", + "0.9946849058", + "0.9630957742", + "0.96909068", + "0.9753486772", + "0.9625031318", + "0.9960417687", + "0.9282709804", + "0.9867689207", + "0.9839136881", + "0.9741542206", + "0.9733793442", + "0.999521469", + "0.9761302322", + "0.9458240942", + "0.8604959948", + "0.8723005396", + "0.8733178155", + "0.8173410383", + "0.8294679588", + "0.8261795568", + "0.8075053577", + "0.8161873094", + "0.8121465225", + "0.8021833727", + "0.8279843993", + "0.8246730626", + "0.7880437843", + "0.806582217", + "0.764340958", + "0.7670198968", + "0.7810103121", + "0.7825114218", + "0.7691815767", + "0.7586601826", + "0.7854146149", + "0.7713376678", + "0.7313313707", + "0.7386949063", + "0.9082624698", + "0.728595961", + "0.7331403153", + "0.7367440892", + "0.732691481", + "0.6998094543", + "0.7296181291", + "0.7496773713", + "0.751670095", + "0.7497524956", + "0.7330694066", + "0.731909477", + "0.6976730672", + "0.6999488687", + "0.8258322622", + "0.8370266183", + "0.723313394", + "0.7289708058", + "0.7190421142", + "0.6831739336", + "0.7087823305", + "0.699517216", + "0.6916524682", + "0.6907985378", + "0.6983230937", + "0.6923156199", + "0.7113845388", + "0.705308222", + "0.7170305728", + "0.711797797", + "0.6985815478", + "0.6866478461", + "0.696308572", + "0.6921550877", + "0.6980573903", + "0.6901090455", + "0.6655485098", + "0.6749614763", + "0.6687930609", + "0.6968242485", + "0.6945193009", + "0.686800221", + "0.7006313438", + "0.7133234545", + "0.7442424272", + "0.7478663261", + "0.7366531829", + "0.7527035808", + "0.733253493", + "0.7296767919", + "0.7465938508", + "0.7363948426", + "0.7409536144", + "0.7490066361", + "0.7347917996", + "0.726616593", + "0.7867075725", + "0.7631697992", + "0.7634868252", + "0.7641302391", + "0.7586376444", + "0.7487430203", + "0.8089200967", + "0.7798289638", + "0.7020717298", + "0.7208867492", + "0.7406525074", + "0.7167621977", + "0.6984655724", + "0.6799356865", + "0.696240878", + "0.7035972782", + "0.6859954552", + "0.741503521", + "0.7476747781", + "0.7513924356", + "0.7866545272", + "0.7406661452", + "0.7663419529", + "0.6513056899", + "0.6341872518", + "0.7372150179", + "0.7482037065", + "0.682274997", + "0.6835518734", + "0.6417350255", + "0.6581541965", + "0.588908944", + "0.6126480734", + "0.6000726122", + "0.5778697925", + "0.292094385", + "0.2983937206", + "0.2783954152", + "0.0788399201", + "0.0", + "0.3069884628", + "0.3167876023", + "0.3657161523", + "0.4011403154", + "0.3759531361", + "0.3566413339", + "0.3403708657", + "0.3521694664", + "0.3518629162", + "0.3826788116", + "0.3830365074", + "0.4860083907", + "0.7062550699", + "0.7108387111", + "0.7205822871", + "0.7003438312", + "0.662039151", + "0.7314326478", + "0.7123963243", + "0.7172580125", + "0.6540461661", + "0.6857582795", + "0.6943943382", + "0.7060520924", + "0.6884875529", + "0.6751232373", + "0.6394902557", + "0.6385758833", + "0.6450425731", + "0.7208808558", + "0.7009973681", + "0.7763802665", + "0.7303907134", + "0.6847331367", + "0.6909381736", + "0.695878463", + "0.6905698043", + "0.6847682033", + "0.7122084723", + "0.6943520085", + "0.6863025149", + "0.6772895479", + "0.6992270249", + "0.6937251801", + "0.6953590721", + "0.659308981", + "0.6614654524", + "0.6345912395", + "0.71785493", + "0.6935931537", + "0.6789513401", + "0.6592199942", + "0.7949436849", + "0.7982034932", + "0.8261104745", + "0.7807462955", + "0.7848496115", + "0.798898091", + "0.8126145568", + "0.836253778", + "0.7774490863", + "0.7554629184", + "0.7840691509", + "0.7523198063", + "0.7556336316", + "0.7686008784", + "0.7489555135", + "0.7562178577", + "0.7418530048", + "0.7377645759", + "0.8195082086", + "0.8116996742", + "0.7660188647", + "0.7867858274", + "0.7834665567", + "0.8366759162", + "0.7640742705", + "0.7482854936", + "0.7659180205", + "0.7667411362", + "0.7681709984", + "0.7935919684", + "0.8055166178", + "0.863980638", + "0.8673670322", + "0.8504127097", + "0.8356448474", + "0.8164187145", + "0.7855528352", + "1.146834897", + "1.1712753735", + "1.135120095", + "1.1457706997", + "1.1230151652", + "1.1092635443", + "1.1996119298", + "1.2284561149", + "1.2295740371", + "1.1538431725", + "1.1513752972", + "1.1514420128", + "1.1452321186", + "1.1633193272", + "1.1393364714", + "1.1151886409", + "1.077985531", + "1.0861285286", + "1.06430995", + "1.0850415995", + "1.0433260292", + "1.0578135621", + "1.0594659883", + "1.0650818293", + "1.0575890139", + "1.0571236148", + "1.0543844669", + "1.0446868398", + "1.0623940621", + "1.0425404265", + "1.0449875774", + "1.040727743", + "1.05538619", + "1.0744862921", + "1.0177841734", + "1.0401849476", + "1.0482225784", + "1.0473646688", + "1.0306213234", + "1.0198434839", + "1.0199746416", + "1.0246672892", + "1.027984063", + "1.060704675", + "1.0919067635", + "1.0868347856", + "1.0107765151", + "1.0116678001", + "1.0069194884", + "1.0129687385", + "0.9340004205", + "0.8309571034", + "0.8445896164", + "1.0838167181", + "1.2916673439", + "1.045307907", + "1.1058231925", + "1.1072151415", + "1.0830785341", + "1.0907570373", + "1.1134774283", + "1.1032789604", + "1.1206880564", + "1.1218421178", + "1.1184047878", + "1.1180658294", + "1.1448503017", + "1.114807784", + "1.1184470625", + "1.122271644", + "1.1224911778", + "1.0858438134", + "1.0907201286", + "1.1117661687", + "1.0922183557", + "1.0995591028", + "1.0514705174", + "1.0439186117", + "1.0746311927", + "1.0708069457", + "1.0831560379", + "1.0880136737", + "1.0826583194", + "1.0822217492", + "1.073272878", + "1.0852892982", + "1.0629385569", + "1.0788870755", + "1.0875998146", + "1.0833145327", + "1.0915120991", + "1.1067683206", + "1.1022376681", + "1.0433319641", + "1.0810824743", + "1.0715838709", + "1.0336779422", + "1.3038532697", + "1.3364899275", + "1.3019664882", + "1.3106453417", + "1.2845357979", + "1.098325958", + "0.9515961861", + "0.9436287608", + "0.9969638719", + "0.9602359572", + "0.9652764483", + "0.9630458502", + "0.9506994295", + "0.9556420306", + "0.9088917461", + "0.9641872222", + "0.9585494709", + "1.0040348938", + "0.982130072", + "0.9744848358", + "0.9618149618", + "0.8747038265", + "0.8786214426", + "0.9867761678", + "0.9693321715", + "0.973279484", + "0.968091833", + "0.9406757002", + "1.0297510652", + "0.9773206313", + "0.9773670062", + "1.0744158761", + "1.1049628389", + "1.0603746526", + "1.067367024", + "1.0401306792", + "1.0455184774", + "1.0446855995", + "1.0368522839", + "0.979472902", + "1.1280866543", + "1.1822516218", + "1.1492745451", + "1.1384729442", + "1.1457788588", + "1.0863740202", + "1.0989748511", + "1.1060324641", + "1.1012704318", + "1.1506334733", + "1.1566203455", + "1.1660191946", + "1.1781105748", + "1.1132866148", + "1.1550753359", + "1.1532069196", + "1.0796213574", + "1.0777490864", + "1.1059448601", + "1.0990482292", + "1.1508669805", + "1.0545428693", + "0.9998722109", + "1.0176859418", + "0.980430546", + "1.0128302735", + "1.0960610343", + "1.1093033905", + "1.1242196179", + "1.1394560251", + "1.0532246206", + "0.9856136697", + "1.0459963876", + "1.1187006819", + "0.9645351767", + "0.9933937788", + "0.9995160274", + "1.0563053993", + "1.0096355174", + "1.0161491632", + "1.0209315092", + "1.0021801485", + "1.0284266954", + "1.0957043974", + "1.1022585616", + "1.1300440766", + "1.1430470668", + "1.1396673668", + "1.0183042864", + "1.0453485935", + "1.008637638", + "1.0140548565", + "1.0660394684", + "1.0983526897", + "1.0902880681", + "1.0987035315", + "1.0857981888", + "1.0729051028", + "1.0774515908", + "1.1310768827", + "1.1864627041", + "1.2832200253", + "1.1963444432", + "1.1957141383", + "1.22353989", + "1.1609275303", + "1.2277736496", + "1.2228197231", + "1.1877946224", + "1.1970580881", + "1.092344207", + "1.3839012723", + "1.3100559636", + "1.319244984", + "1.2467546117", + "1.2590454533", + "1.2486603538", + "1.3508639629", + "1.2780956007", + "1.3162832156", + "1.3103660898", + "1.2882505718", + "1.2174777853", + "1.2202226288", + "1.2648811789", + "1.2586419373", + "1.2632307379", + "1.2286291501", + "1.2202101256", + "1.2121732842", + "1.2718224057", + "1.2306510498", + "1.2383197522", + "1.208840581", + "1.1615875007", + "1.265150153", + "1.2032342641", + "1.1963676194", + "1.2165958513", + "1.2927401089", + "1.3050116675", + "1.3136005307", + "1.3087127621", + "1.3025080357", + "1.2923482409", + "1.2913663521", + "1.2847132702", + "1.4029081477", + "1.3837914228", + "1.2577265427", + "1.3070118857", + "1.3069392038", + "1.3005799754", + "1.3030927459", + "1.369175246", + "1.3637252236", + "1.3186036842", + "1.3045683406", + "1.3019154385", + "1.2904193545", + "1.3091527482", + "1.277629124", + "1.2685849737", + "1.2644234138", + "1.2799841077", + "1.2754544186", + "1.2663524709", + "1.2729223853", + "1.2875976991", + "1.3023482716", + "1.3112826384", + "1.3377473261", + "1.2892779336", + "1.3132897013", + "1.3242147249", + "1.2679030795", + "1.3222228186", + "1.2971549663", + "1.2730923772", + "1.2725936064", + "1.2802869235", + "1.2742518138", + "1.2473838907", + "1.2553289488", + "1.2584711582", + "1.2297514427" + ] + }, + "essential_compounds": [ + "12dgr180", + "26dap_M", + "2obut", + "4hbz", + "ac", + "acgam", + "ade", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_L", + "arbt", + "arg_L", + "asn_L", + "asp_L", + "btn", + "but", + "ca2", + "cd2", + "cellb", + "cgly", + "chor", + "cit", + "cl", + "co2", + "cobalt2", + "cro4", + "csn", + "cu2", + "cys_L", + "cytd", + "dad_2", + "ddca", + "dgsn", + "etha", + "fe2", + "fe3", + "fol", + "for", + "fru", + "galt", + "gam", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gua", + "h2o", + "h2s", + "h", + "hdca", + "hg2", + "his_L", + "ile_L", + "k", + "lac_D", + "lac_L", + "leu_L", + "lys_L", + "malt", + "man", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mqn7", + "mqn8", + "na1", + "nac", + "nh4", + "nmn", + "no3", + "o2", + "ocdca", + "pb", + "phe_L", + "pheme", + "pi", + "pnto_R", + "pro_L", + "ptrc", + "pyr", + "ribflv", + "salcn", + "sbt_D", + "ser_L", + "sheme", + "so4", + "spmd", + "succ", + "sucr", + "taur", + "thm", + "thr_L", + "thymd", + "tre", + "trp_L", + "ttdca", + "tyr_L", + "ura", + "uri", + "val_L", + "xan", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_447.json b/agents/agora/agent_447.json new file mode 100644 index 0000000000000000000000000000000000000000..f406a17d8937c4618c9d56206e7d94b74532c760 --- /dev/null +++ b/agents/agora/agent_447.json @@ -0,0 +1,953 @@ +{ + "id": 447, + "name": "Halococcus_morrhuae_DSM1307", + "N_R": 1064, + "taxonomy": { + "k": 447, + "tax_distance": [ + "2.373043957", + "1.9551660897", + "1.9484668606", + "2.1750495677", + "1.8564494938", + "1.9015781807", + "1.8828728829", + "1.8799302886", + "1.9439118869", + "1.862267795", + "1.8793324984", + "1.9874548122", + "1.9604725905", + "2.1884865484", + "2.2368433655", + "2.2671758761", + "2.1475254782", + "2.156449595", + "2.1919240706", + "1.7249083866", + "1.6602374099", + "1.4097161512", + "1.3430657188", + "1.2215860421", + "1.0474067633", + "1.0415955552", + "1.0382409838", + "1.0406020382", + "1.0248357482", + "1.0161499853", + "1.0186008914", + "1.1201868275", + "1.1297246303", + "1.1260907203", + "1.1417867889", + "1.1102852089", + "1.133031153", + "1.1513370645", + "1.1323051015", + "1.4252457605", + "1.1700873818", + "1.0887263258", + "1.095491632", + "1.0980992121", + "1.0948674701", + "1.0978408518", + "1.0929422469", + "1.0933272822", + "1.0875123714", + "1.0795511818", + "1.0211290038", + "1.0266414038", + "1.0209005705", + "0.9930542999", + "0.999576044", + "1.0286780412", + "1.0026011544", + "1.0005851268", + "1.0213395324", + "1.0189996377", + "1.0022578102", + "1.0276085818", + "1.0296833716", + "1.0283524784", + "1.0427436959", + "1.0444658578", + "1.0444658578", + "1.0511114405", + "1.0511114405", + "1.0511114405", + "1.0511114405", + "1.0511114405", + "1.0511114405", + "1.0511114405", + "1.0511114405", + "1.0470320778", + "1.047377815", + "1.0409461074", + "1.051438582", + "1.0505333401", + "1.0466351705", + "1.0448924969", + "1.0462110667", + "1.0427091862", + "1.0376314379", + "1.0409765635", + "1.0464223303", + "1.0418841386", + "1.0268841825", + "1.0352552974", + "1.0299799122", + "1.0461278532", + "1.041430564", + "1.0455641333", + "1.0235244227", + "1.0181242389", + "1.032190594", + "1.042851003", + "1.059648046", + "1.0420577558", + "1.0320626373", + "1.0307448197", + "1.0114944398", + "1.0243729288", + "1.0832453738", + "1.0780934621", + "1.1449897194", + "1.1111504634", + "1.0483418226", + "1.0520680794", + "1.0548015465", + "1.047697465", + "1.047697465", + "1.0290735628", + "1.0319777091", + "1.0238771924", + "1.0594028911", + "0.9961803416", + "0.9740894282", + "0.9919537845", + "0.9786827892", + "0.9791083816", + "1.0973600952", + "1.104550546", + "1.1259915589", + "0.9305878432", + "1.1003367965", + "1.1070120306", + "1.0916489383", + "1.1112829435", + "1.1004700295", + "1.1055365158", + "1.0970402382", + "1.0900901331", + "1.080960436", + "1.0816185564", + "1.1005324796", + "1.0736510357", + "1.0556868252", + "1.1495747661", + "1.1509486398", + "1.1202602275", + "1.1778399181", + "1.1154185056", + "1.1209124484", + "1.1179514233", + "1.1426584084", + "1.1318359596", + "1.0399928876", + "1.0110827981", + "0.9722717381", + "0.9501704449", + "0.9415286386", + "0.9364084475", + "0.9732800732", + "0.9757751991", + "0.9475871302", + "0.9359491763", + "0.9395356853", + "1.0084887961", + "1.0151971782", + "0.9848262316", + "1.1087443048", + "1.1032294094", + "1.1055704606", + "1.0632935344", + "1.0594395549", + "1.0973461286", + "1.0891693143", + "1.0579272918", + "1.0594866505", + "1.0775066442", + "1.0342018495", + "1.0233657205", + "1.024526273", + "1.0580126144", + "1.0461890617", + "1.0275622045", + "1.0465508268", + "1.0278828281", + "1.0416977703", + "1.0359151993", + "1.0348468173", + "1.055405269", + "1.0511927216", + "1.0340736762", + "1.0683020502", + "1.0530678085", + "1.0581801175", + "1.057573432", + "1.0219718016", + "1.0179515934", + "1.0024842418", + "1.020830747", + "1.0177643722", + "0.9920727784", + "0.9750600305", + "0.9697523796", + "0.9744941642", + "0.9736355535", + "1.0064015134", + "1.0054208516", + "1.0294606492", + "1.0073516222", + "0.9678436302", + "0.971008041", + "0.996069933", + "0.9923610489", + "0.9681104322", + "0.9606530823", + "0.9630063416", + "0.9721838765", + "0.8979497796", + "0.9405528804", + "0.9248491097", + "0.9186873465", + "0.9124071017", + "0.9003044841", + "0.9034748235", + "0.9456469129", + "1.3800387441", + "1.4648169432", + "1.3773523681", + "1.362534656", + "1.3408620232", + "0.8945396821", + "0.9133440881", + "0.9632769532", + "0.9249162012", + "0.9401534042", + "1.0536905418", + "1.0074611489", + "1.0291128231", + "0.987779477", + "0.9011177885", + "0.9135001314", + "0.9199912026", + "0.9804177394", + "0.9716182068", + "0.9696994758", + "0.9957017569", + "0.9930093213", + "0.9842412657", + "1.0157618893", + "1.0238453538", + "1.0080340806", + "0.9814158308", + "0.9760702577", + "0.9814809336", + "0.9701877924", + "0.9151568976", + "0.9202417195", + "0.919486496", + "0.9662980805", + "0.9217278011", + "0.9041796027", + "0.9816044089", + "0.9348717691", + "0.9099543066", + "0.9229897978", + "0.8936052842", + "0.858818926", + "0.9429069618", + "0.9452607482", + "0.9500379579", + "0.9553835559", + "0.9210825301", + "0.9817382794", + "0.9885743948", + "0.9850853923", + "0.9977504577", + "0.9838344149", + "0.9636185087", + "0.95501774", + "1.0016696082", + "1.0209478809", + "1.0716269008", + "0.9145492846", + "0.8837219905", + "0.9767277044", + "0.9757110045", + "0.9629319288", + "0.9198566417", + "0.9846799559", + "0.9756232037", + "0.978275466", + "1.0094147713", + "0.9510736381", + "0.9363399353", + "0.917964807", + "0.9462804457", + "0.9177875204", + "0.9729334377", + "1.0039268377", + "1.0265596855", + "0.9832435085", + "0.95458972", + "0.9748366167", + "0.9545902283", + "0.9409762534", + "0.9057211825", + "0.940670742", + "0.8717602661", + "0.8890256371", + "0.9718343481", + "0.9601996873", + "0.957301261", + "0.9674555682", + "0.9758184537", + "0.9651410925", + "0.9770816601", + "0.9655482026", + "0.963086696", + "0.9314975644", + "0.9374924702", + "0.9437504674", + "0.930904922", + "0.9644435589", + "0.8966727706", + "0.9551707109", + "0.9523154783", + "0.9425560108", + "0.9417811344", + "0.9679232592", + "0.9445320224", + "0.9142258844", + "0.828897785", + "0.8407023298", + "0.8417196057", + "0.7857428285", + "0.797869749", + "0.794581347", + "0.7759071479", + "0.7845890996", + "0.7805483127", + "0.7705851629", + "0.7963861895", + "0.7930748528", + "0.7564455745", + "0.7749840072", + "0.7327427482", + "0.735421687", + "0.7494121023", + "0.750913212", + "0.7375833669", + "0.7270619728", + "0.7538164051", + "0.739739458", + "0.6997331609", + "0.7070966965", + "0.87666426", + "0.6969977512", + "0.7015421055", + "0.7051458794", + "0.7010932712", + "0.6682112445", + "0.6980199193", + "0.7180791615", + "0.7200718852", + "0.7181542858", + "0.7014711968", + "0.7003112672", + "0.6660748574", + "0.6683506589", + "0.7942340524", + "0.8054284085", + "0.6917151842", + "0.697372596", + "0.6874439044", + "0.6515757238", + "0.6771841207", + "0.6679190062", + "0.6600542584", + "0.659200328", + "0.6667248839", + "0.6607174101", + "0.679786329", + "0.6737100122", + "0.685432363", + "0.6801995872", + "0.666983338", + "0.6550496363", + "0.6647103622", + "0.6605568779", + "0.6664591805", + "0.6585108357", + "0.6339503", + "0.6433632665", + "0.6371948511", + "0.6652260387", + "0.6629210911", + "0.6552020112", + "0.669033134", + "0.6817252447", + "0.7126442174", + "0.7162681163", + "0.7050549731", + "0.721105371", + "0.7016552832", + "0.6980785821", + "0.714995641", + "0.7047966328", + "0.7093554046", + "0.7174084263", + "0.7031935898", + "0.6950183832", + "0.7551093627", + "0.7315715894", + "0.7318886154", + "0.7325320293", + "0.7270394346", + "0.7171448105", + "0.7773218869", + "0.748230754", + "0.67047352", + "0.6892885394", + "0.7090542976", + "0.6851639879", + "0.6668673626", + "0.6483374767", + "0.6646426682", + "0.6719990684", + "0.6543972454", + "0.7099053112", + "0.7160765683", + "0.7197942258", + "0.7550563174", + "0.7090679354", + "0.7347437431", + "0.6197074801", + "0.602589042", + "0.7056168081", + "0.7166054967", + "0.6506767872", + "0.6519536636", + "0.6101368157", + "0.6265559867", + "0.5573107342", + "0.5810498636", + "0.5684744024", + "0.5462715827", + "0.3096329844", + "0.31593232", + "0.2959340146", + "0.3084624605", + "0.3069884628", + "0.0", + "0.0401859151", + "0.2975889963", + "0.3330131594", + "0.3078259801", + "0.2885141779", + "0.3087726559", + "0.3205712566", + "0.3202647064", + "0.3510806018", + "0.3514382976", + "0.4544101809", + "0.6746568601", + "0.6792405013", + "0.6889840773", + "0.6687456214", + "0.6304409412", + "0.699834438", + "0.6807981145", + "0.6856598027", + "0.6224479563", + "0.6541600697", + "0.6627961284", + "0.6744538826", + "0.6568893431", + "0.6435250275", + "0.6078920459", + "0.6069776735", + "0.6134443633", + "0.689282646", + "0.6693991583", + "0.7447820567", + "0.6987925036", + "0.6531349269", + "0.6593399638", + "0.6642802532", + "0.6589715945", + "0.6531699935", + "0.6806102625", + "0.6627537987", + "0.6547043051", + "0.6456913381", + "0.6676288151", + "0.6621269703", + "0.6637608623", + "0.6277107712", + "0.6298672426", + "0.6029930297", + "0.6862567202", + "0.6619949439", + "0.6473531303", + "0.6276217844", + "0.7633454751", + "0.7666052834", + "0.7945122647", + "0.7491480857", + "0.7532514017", + "0.7672998812", + "0.781016347", + "0.8046555682", + "0.7458508765", + "0.7238647086", + "0.7524709411", + "0.7207215965", + "0.7240354218", + "0.7370026686", + "0.7173573037", + "0.7246196479", + "0.710254795", + "0.7061663661", + "0.7879099988", + "0.7801014644", + "0.7344206549", + "0.7551876176", + "0.7518683469", + "0.8050777064", + "0.7324760607", + "0.7166872838", + "0.7343198107", + "0.7351429264", + "0.7365727886", + "0.7619937586", + "0.773918408", + "0.8323824282", + "0.8357688224", + "0.8188144999", + "0.8040466376", + "0.7848205047", + "0.7539546254", + "1.1152366872", + "1.1396771637", + "1.1035218852", + "1.1141724899", + "1.0914169554", + "1.0776653345", + "1.16801372", + "1.1968579051", + "1.1979758273", + "1.1222449627", + "1.1197770874", + "1.119843803", + "1.1136339088", + "1.1317211174", + "1.1077382616", + "1.0835904311", + "1.0463873212", + "1.0545303188", + "1.0327117402", + "1.0534433897", + "1.0117278194", + "1.0262153523", + "1.0278677785", + "1.0334836195", + "1.0259908041", + "1.025525405", + "1.0227862571", + "1.01308863", + "1.0307958523", + "1.0109422167", + "1.0133893676", + "1.0091295332", + "1.0237879802", + "1.0428880823", + "0.9861859636", + "1.0085867378", + "1.0166243686", + "1.015766459", + "0.9990231136", + "0.9882452741", + "0.9883764318", + "0.9930690794", + "0.9963858532", + "1.0291064652", + "1.0603085537", + "1.0552365758", + "0.9791783053", + "0.9800695903", + "0.9753212786", + "0.9813705287", + "0.9024022107", + "0.7993588936", + "0.8129914066", + "1.0522185083", + "1.2600691341", + "1.0137096972", + "1.0742249827", + "1.0756169317", + "1.0514803243", + "1.0591588275", + "1.0818792185", + "1.0716807506", + "1.0890898466", + "1.090243908", + "1.086806578", + "1.0864676196", + "1.1132520919", + "1.0832095742", + "1.0868488527", + "1.0906734342", + "1.090892968", + "1.0542456036", + "1.0591219188", + "1.0801679589", + "1.0606201459", + "1.067960893", + "1.0198723076", + "1.0123204019", + "1.0430329829", + "1.0392087359", + "1.0515578281", + "1.0564154639", + "1.0510601096", + "1.0506235394", + "1.0416746682", + "1.0536910884", + "1.0313403471", + "1.0472888657", + "1.0560016048", + "1.0517163229", + "1.0599138893", + "1.0751701108", + "1.0706394583", + "1.0117337543", + "1.0494842645", + "1.0399856611", + "1.0020797324", + "1.2722550599", + "1.3048917177", + "1.2703682784", + "1.2790471319", + "1.2529375881", + "1.0667277482", + "0.9199979763", + "0.912030551", + "0.9653656621", + "0.9286377474", + "0.9336782385", + "0.9314476404", + "0.9191012197", + "0.9240438208", + "0.8772935363", + "0.9325890124", + "0.9269512611", + "0.972436684", + "0.9505318622", + "0.942886626", + "0.930216752", + "0.8431056167", + "0.8470232328", + "0.955177958", + "0.9377339617", + "0.9416812742", + "0.9364936232", + "0.9090774904", + "0.9981528554", + "0.9457224215", + "0.9457687964", + "1.0428176663", + "1.0733646291", + "1.0287764428", + "1.0357688142", + "1.0085324694", + "1.0139202676", + "1.0130873897", + "1.0052540741", + "0.9478746922", + "1.0964884445", + "1.150653412", + "1.1176763353", + "1.1068747344", + "1.114180649", + "1.0547758104", + "1.0673766413", + "1.0744342543", + "1.069672222", + "1.1190352635", + "1.1250221357", + "1.1344209848", + "1.146512365", + "1.081688405", + "1.1234771261", + "1.1216087098", + "1.0480231476", + "1.0461508766", + "1.0743466503", + "1.0674500194", + "1.1192687707", + "1.0229446595", + "0.9682740011", + "0.986087732", + "0.9488323362", + "0.9812320637", + "1.0644628245", + "1.0777051807", + "1.0926214081", + "1.1078578153", + "1.0216264108", + "0.9540154599", + "1.0143981778", + "1.0871024721", + "0.9329369669", + "0.961795569", + "0.9679178176", + "1.0247071895", + "0.9780373076", + "0.9845509534", + "0.9893332994", + "0.9705819387", + "0.9968284856", + "1.0641061876", + "1.0706603518", + "1.0984458668", + "1.111448857", + "1.108069157", + "0.9867060766", + "1.0137503837", + "0.9770394282", + "0.9824566467", + "1.0344412586", + "1.0667544799", + "1.0586898583", + "1.0671053217", + "1.054199979", + "1.041306893", + "1.045853381", + "1.0994786729", + "1.1548644943", + "1.2516218155", + "1.1647462334", + "1.1641159285", + "1.1919416802", + "1.1293293205", + "1.1961754398", + "1.1912215133", + "1.1561964126", + "1.1654598783", + "1.0607459972", + "1.3523030625", + "1.2784577538", + "1.2876467742", + "1.2151564019", + "1.2274472435", + "1.217062144", + "1.3192657531", + "1.2464973909", + "1.2846850058", + "1.27876788", + "1.256652362", + "1.1858795755", + "1.188624419", + "1.2332829691", + "1.2270437275", + "1.2316325281", + "1.1970309403", + "1.1886119158", + "1.1805750744", + "1.2402241959", + "1.19905284", + "1.2067215424", + "1.1772423712", + "1.1299892909", + "1.2335519432", + "1.1716360543", + "1.1647694096", + "1.1849976415", + "1.2611418991", + "1.2734134577", + "1.2820023209", + "1.2771145523", + "1.2709098259", + "1.2607500311", + "1.2597681423", + "1.2531150604", + "1.3713099379", + "1.352193213", + "1.2261283329", + "1.2754136759", + "1.275340994", + "1.2689817656", + "1.2714945361", + "1.3375770362", + "1.3321270138", + "1.2870054744", + "1.2729701308", + "1.2703172287", + "1.2588211447", + "1.2775545384", + "1.2460309142", + "1.2369867639", + "1.232825204", + "1.2483858979", + "1.2438562088", + "1.2347542611", + "1.2413241755", + "1.2559994893", + "1.2707500618", + "1.2796844286", + "1.3061491163", + "1.2576797238", + "1.2816914915", + "1.2926165151", + "1.2363048697", + "1.2906246088", + "1.2655567565", + "1.2414941674", + "1.2409953966", + "1.2486887137", + "1.242653604", + "1.2157856809", + "1.223730739", + "1.2268729484", + "1.1981532329" + ] + }, + "essential_compounds": [ + "12dgr180", + "26dap_M", + "2dmmq8", + "2obut", + "3mop", + "Lcyst", + "ac", + "acald", + "acgam", + "ade", + "adocbl", + "ala_L", + "amp", + "arbt", + "arg_L", + "asn_L", + "aso3", + "aso4", + "btn", + "but", + "butso3", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cl", + "co2", + "cobalt2", + "cro4", + "csn", + "cu2", + "cytd", + "dad_2", + "dcyt", + "dgsn", + "drib", + "etha", + "ethso3", + "fe2", + "fe3", + "fol", + "for", + "fru", + "gal", + "galt", + "gam", + "glc_D", + "gln_L", + "gly", + "glyb", + "glyc", + "gthox", + "gua", + "h2o", + "h2s", + "h", + "hexs", + "hg2", + "hxan", + "ile_L", + "ind3ac", + "indole", + "isetac", + "k", + "lac_L", + "leu_L", + "lys_L", + "malt", + "man", + "met_D", + "met_L", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mops", + "mqn8", + "mso3", + "na1", + "nac", + "nh4", + "no3", + "o2", + "ocdca", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "pnto_R", + "ppa", + "pro_L", + "pydam", + "pydx", + "pydxn", + "q8", + "rib_D", + "ribflv", + "salcn", + "sbt_D", + "ser_L", + "sheme", + "so4", + "spmd", + "succ", + "sucr", + "sulfac", + "taur", + "thm", + "thr_L", + "thymd", + "tre", + "trp_L", + "tsul", + "tyr_L", + "ura", + "val_L", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_448.json b/agents/agora/agent_448.json new file mode 100644 index 0000000000000000000000000000000000000000..e9bd6c81fc327c8262dc578db4e820c195231115 --- /dev/null +++ b/agents/agora/agent_448.json @@ -0,0 +1,926 @@ +{ + "id": 448, + "name": "Helicobacter_bilis_ATCC_43879", + "N_R": 1000, + "taxonomy": { + "k": 448, + "tax_distance": [ + "2.3828430965", + "1.9649652292", + "1.9582660001", + "2.1848487072", + "1.8662486333", + "1.9113773202", + "1.8926720224", + "1.8897294281", + "1.9537110264", + "1.8720669345", + "1.8891316379", + "1.9972539517", + "1.97027173", + "2.1982856879", + "2.246642505", + "2.2769750156", + "2.1573246177", + "2.1662487345", + "2.2017232101", + "1.7347075261", + "1.6700365494", + "1.4195152907", + "1.3528648583", + "1.2313851816", + "1.0572059028", + "1.0513946947", + "1.0480401233", + "1.0504011777", + "1.0346348877", + "1.0259491248", + "1.0284000309", + "1.129985967", + "1.1395237698", + "1.1358898598", + "1.1515859284", + "1.1200843484", + "1.1428302925", + "1.161136204", + "1.142104241", + "1.4350449", + "1.1798865213", + "1.0985254653", + "1.1052907715", + "1.1078983516", + "1.1046666096", + "1.1076399913", + "1.1027413864", + "1.1031264217", + "1.0973115109", + "1.0893503213", + "1.0309281433", + "1.0364405433", + "1.03069971", + "1.0028534394", + "1.0093751835", + "1.0384771807", + "1.0124002939", + "1.0103842663", + "1.0311386719", + "1.0287987772", + "1.0120569497", + "1.0374077213", + "1.0394825111", + "1.0381516179", + "1.0525428354", + "1.0542649973", + "1.0542649973", + "1.06091058", + "1.06091058", + "1.06091058", + "1.06091058", + "1.06091058", + "1.06091058", + "1.06091058", + "1.06091058", + "1.0568312173", + "1.0571769545", + "1.0507452469", + "1.0612377215", + "1.0603324796", + "1.05643431", + "1.0546916364", + "1.0560102062", + "1.0525083257", + "1.0474305774", + "1.050775703", + "1.0562214698", + "1.0516832781", + "1.036683322", + "1.0450544369", + "1.0397790517", + "1.0559269927", + "1.0512297035", + "1.0553632728", + "1.0333235622", + "1.0279233784", + "1.0419897335", + "1.0526501425", + "1.0694471855", + "1.0518568953", + "1.0418617768", + "1.0405439592", + "1.0212935793", + "1.0341720683", + "1.0930445133", + "1.0878926016", + "1.1547888589", + "1.1209496029", + "1.0581409621", + "1.0618672189", + "1.064600686", + "1.0574966045", + "1.0574966045", + "1.0388727023", + "1.0417768486", + "1.0336763319", + "1.0692020306", + "1.0059794811", + "0.9838885677", + "1.001752924", + "0.9884819287", + "0.9889075211", + "1.1071592347", + "1.1143496855", + "1.1357906984", + "0.9403869827", + "1.110135936", + "1.1168111701", + "1.1014480778", + "1.121082083", + "1.110269169", + "1.1153356553", + "1.1068393777", + "1.0998892726", + "1.0907595755", + "1.0914176959", + "1.1103316191", + "1.0834501752", + "1.0654859647", + "1.1593739056", + "1.1607477793", + "1.130059367", + "1.1876390576", + "1.1252176451", + "1.1307115879", + "1.1277505628", + "1.1524575479", + "1.1416350991", + "1.0497920271", + "1.0208819376", + "0.9820708776", + "0.9599695844", + "0.9513277781", + "0.946207587", + "0.9830792127", + "0.9855743386", + "0.9573862697", + "0.9457483158", + "0.9493348248", + "1.0182879356", + "1.0249963177", + "0.9946253711", + "1.1185434443", + "1.1130285489", + "1.1153696001", + "1.0730926739", + "1.0692386944", + "1.1071452681", + "1.0989684538", + "1.0677264313", + "1.06928579", + "1.0873057837", + "1.044000989", + "1.03316486", + "1.0343254125", + "1.0678117539", + "1.0559882012", + "1.037361344", + "1.0563499663", + "1.0376819676", + "1.0514969098", + "1.0457143388", + "1.0446459568", + "1.0652044085", + "1.0609918611", + "1.0438728157", + "1.0781011897", + "1.062866948", + "1.067979257", + "1.0673725715", + "1.0317709411", + "1.0277507329", + "1.0122833813", + "1.0306298865", + "1.0275635117", + "1.0018719179", + "0.98485917", + "0.9795515191", + "0.9842933037", + "0.983434693", + "1.0162006529", + "1.0152199911", + "1.0392597887", + "1.0171507617", + "0.9776427697", + "0.9808071805", + "1.0058690725", + "1.0021601884", + "0.9779095717", + "0.9704522218", + "0.9728054811", + "0.981983016", + "0.9077489191", + "0.9503520199", + "0.9346482492", + "0.928486486", + "0.9222062412", + "0.9101036236", + "0.913273963", + "0.9554460524", + "1.3898378836", + "1.4746160827", + "1.3871515076", + "1.3723337955", + "1.3506611627", + "0.9043388216", + "0.9231432276", + "0.9730760927", + "0.9347153407", + "0.9499525437", + "1.0634896813", + "1.0172602884", + "1.0389119626", + "0.9975786165", + "0.910916928", + "0.9232992709", + "0.9297903421", + "0.9902168789", + "0.9814173463", + "0.9794986153", + "1.0055008964", + "1.0028084608", + "0.9940404052", + "1.0255610288", + "1.0336444933", + "1.0178332201", + "0.9912149703", + "0.9858693972", + "0.9912800731", + "0.9799869319", + "0.9249560371", + "0.930040859", + "0.9292856355", + "0.97609722", + "0.9315269406", + "0.9139787422", + "0.9914035484", + "0.9446709086", + "0.9197534461", + "0.9327889373", + "0.9034044237", + "0.8686180655", + "0.9527061013", + "0.9550598877", + "0.9598370974", + "0.9651826954", + "0.9308816696", + "0.9915374189", + "0.9983735343", + "0.9948845318", + "1.0075495972", + "0.9936335544", + "0.9734176482", + "0.9648168795", + "1.0114687477", + "1.0307470204", + "1.0814260403", + "0.9243484241", + "0.89352113", + "0.9865268439", + "0.985510144", + "0.9727310683", + "0.9296557812", + "0.9944790954", + "0.9854223432", + "0.9880746055", + "1.0192139108", + "0.9608727776", + "0.9461390748", + "0.9277639465", + "0.9560795852", + "0.9275866599", + "0.9827325772", + "1.0137259772", + "1.036358825", + "0.993042648", + "0.9643888595", + "0.9846357562", + "0.9643893678", + "0.9507753929", + "0.915520322", + "0.9504698815", + "0.8815594056", + "0.8988247766", + "0.9816334876", + "0.9699988268", + "0.9671004005", + "0.9772547077", + "0.9856175932", + "0.974940232", + "0.9868807996", + "0.9753473421", + "0.9728858355", + "0.9412967039", + "0.9472916097", + "0.9535496069", + "0.9407040615", + "0.9742426984", + "0.9064719101", + "0.9649698504", + "0.9621146178", + "0.9523551503", + "0.9515802739", + "0.9777223987", + "0.9543311619", + "0.9240250239", + "0.8386969245", + "0.8505014693", + "0.8515187452", + "0.795541968", + "0.8076688885", + "0.8043804865", + "0.7857062874", + "0.7943882391", + "0.7903474522", + "0.7803843024", + "0.806185329", + "0.8028739923", + "0.766244714", + "0.7847831467", + "0.7425418877", + "0.7452208265", + "0.7592112418", + "0.7607123515", + "0.7473825064", + "0.7368611123", + "0.7636155446", + "0.7495385975", + "0.7095323004", + "0.716895836", + "0.8864633995", + "0.7067968907", + "0.711341245", + "0.7149450189", + "0.7108924107", + "0.678010384", + "0.7078190588", + "0.727878301", + "0.7298710247", + "0.7279534253", + "0.7112703363", + "0.7101104067", + "0.6758739969", + "0.6781497984", + "0.8040331919", + "0.815227548", + "0.7015143237", + "0.7071717355", + "0.6972430439", + "0.6613748633", + "0.6869832602", + "0.6777181457", + "0.6698533979", + "0.6689994675", + "0.6765240234", + "0.6705165496", + "0.6895854685", + "0.6835091517", + "0.6952315025", + "0.6899987267", + "0.6767824775", + "0.6648487758", + "0.6745095017", + "0.6703560174", + "0.67625832", + "0.6683099752", + "0.6437494395", + "0.653162406", + "0.6469939906", + "0.6750251782", + "0.6727202306", + "0.6650011507", + "0.6788322735", + "0.6915243842", + "0.7224433569", + "0.7260672558", + "0.7148541126", + "0.7309045105", + "0.7114544227", + "0.7078777216", + "0.7247947805", + "0.7145957723", + "0.7191545441", + "0.7272075658", + "0.7129927293", + "0.7048175227", + "0.7649085022", + "0.7413707289", + "0.7416877549", + "0.7423311688", + "0.7368385741", + "0.72694395", + "0.7871210264", + "0.7580298935", + "0.6802726595", + "0.6990876789", + "0.7188534371", + "0.6949631274", + "0.6766665021", + "0.6581366162", + "0.6744418077", + "0.6817982079", + "0.6641963849", + "0.7197044507", + "0.7258757078", + "0.7295933653", + "0.7648554569", + "0.7188670749", + "0.7445428826", + "0.6295066196", + "0.6123881815", + "0.7154159476", + "0.7264046362", + "0.6604759267", + "0.6617528031", + "0.6199359552", + "0.6363551262", + "0.5671098737", + "0.5908490031", + "0.5782735419", + "0.5560707222", + "0.3194321239", + "0.3257314595", + "0.3057331541", + "0.3182616", + "0.3167876023", + "0.0401859151", + "0.0", + "0.3073881358", + "0.3428122989", + "0.3176251196", + "0.2983133174", + "0.3185717954", + "0.3303703961", + "0.3300638459", + "0.3608797413", + "0.3612374371", + "0.4642093204", + "0.6844559996", + "0.6890396408", + "0.6987832168", + "0.6785447609", + "0.6402400807", + "0.7096335775", + "0.690597254", + "0.6954589422", + "0.6322470958", + "0.6639592092", + "0.6725952679", + "0.6842530221", + "0.6666884826", + "0.653324167", + "0.6176911854", + "0.616776813", + "0.6232435028", + "0.6990817855", + "0.6791982978", + "0.7545811962", + "0.7085916431", + "0.6629340664", + "0.6691391033", + "0.6740793927", + "0.668770734", + "0.662969133", + "0.690409402", + "0.6725529382", + "0.6645034446", + "0.6554904776", + "0.6774279546", + "0.6719261098", + "0.6735600018", + "0.6375099107", + "0.6396663821", + "0.6127921692", + "0.6960558597", + "0.6717940834", + "0.6571522698", + "0.6374209239", + "0.7731446146", + "0.7764044229", + "0.8043114042", + "0.7589472252", + "0.7630505412", + "0.7770990207", + "0.7908154865", + "0.8144547077", + "0.755650016", + "0.7336638481", + "0.7622700806", + "0.730520736", + "0.7338345613", + "0.7468018081", + "0.7271564432", + "0.7344187874", + "0.7200539345", + "0.7159655056", + "0.7977091383", + "0.7899006039", + "0.7442197944", + "0.7649867571", + "0.7616674864", + "0.8148768459", + "0.7422752002", + "0.7264864233", + "0.7441189502", + "0.7449420659", + "0.7463719281", + "0.7717928981", + "0.7837175475", + "0.8421815677", + "0.8455679619", + "0.8286136394", + "0.8138457771", + "0.7946196442", + "0.7637537649", + "1.1250358267", + "1.1494763032", + "1.1133210247", + "1.1239716294", + "1.1012160949", + "1.087464474", + "1.1778128595", + "1.2066570446", + "1.2077749668", + "1.1320441022", + "1.1295762269", + "1.1296429425", + "1.1234330483", + "1.1415202569", + "1.1175374011", + "1.0933895706", + "1.0561864607", + "1.0643294583", + "1.0425108797", + "1.0632425292", + "1.0215269589", + "1.0360144918", + "1.037666918", + "1.043282759", + "1.0357899436", + "1.0353245445", + "1.0325853966", + "1.0228877695", + "1.0405949918", + "1.0207413562", + "1.0231885071", + "1.0189286727", + "1.0335871197", + "1.0526872218", + "0.9959851031", + "1.0183858773", + "1.0264235081", + "1.0255655985", + "1.0088222531", + "0.9980444136", + "0.9981755713", + "1.0028682189", + "1.0061849927", + "1.0389056047", + "1.0701076932", + "1.0650357153", + "0.9889774448", + "0.9898687298", + "0.9851204181", + "0.9911696682", + "0.9122013502", + "0.8091580331", + "0.8227905461", + "1.0620176478", + "1.2698682736", + "1.0235088367", + "1.0840241222", + "1.0854160712", + "1.0612794638", + "1.068957967", + "1.091678358", + "1.0814798901", + "1.0988889861", + "1.1000430475", + "1.0966057175", + "1.0962667591", + "1.1230512314", + "1.0930087137", + "1.0966479922", + "1.1004725737", + "1.1006921075", + "1.0640447431", + "1.0689210583", + "1.0899670984", + "1.0704192854", + "1.0777600325", + "1.0296714471", + "1.0221195414", + "1.0528321224", + "1.0490078754", + "1.0613569676", + "1.0662146034", + "1.0608592491", + "1.0604226789", + "1.0514738077", + "1.0634902279", + "1.0411394866", + "1.0570880052", + "1.0658007443", + "1.0615154624", + "1.0697130288", + "1.0849692503", + "1.0804385978", + "1.0215328938", + "1.059283404", + "1.0497848006", + "1.0118788719", + "1.2820541994", + "1.3146908572", + "1.2801674179", + "1.2888462714", + "1.2627367276", + "1.0765268877", + "0.9297971158", + "0.9218296905", + "0.9751648016", + "0.9384368869", + "0.943477378", + "0.9412467799", + "0.9289003592", + "0.9338429603", + "0.8870926758", + "0.9423881519", + "0.9367504006", + "0.9822358235", + "0.9603310017", + "0.9526857655", + "0.9400158915", + "0.8529047562", + "0.8568223723", + "0.9649770975", + "0.9475331012", + "0.9514804137", + "0.9462927627", + "0.9188766299", + "1.0079519949", + "0.955521561", + "0.9555679359", + "1.0526168058", + "1.0831637686", + "1.0385755823", + "1.0455679537", + "1.0183316089", + "1.0237194071", + "1.0228865292", + "1.0150532136", + "0.9576738317", + "1.106287584", + "1.1604525515", + "1.1274754748", + "1.1166738739", + "1.1239797885", + "1.0645749499", + "1.0771757808", + "1.0842333938", + "1.0794713615", + "1.128834403", + "1.1348212752", + "1.1442201243", + "1.1563115045", + "1.0914875445", + "1.1332762656", + "1.1314078493", + "1.0578222871", + "1.0559500161", + "1.0841457898", + "1.0772491589", + "1.1290679102", + "1.032743799", + "0.9780731406", + "0.9958868715", + "0.9586314757", + "0.9910312032", + "1.074261964", + "1.0875043202", + "1.1024205476", + "1.1176569548", + "1.0314255503", + "0.9638145994", + "1.0241973173", + "1.0969016116", + "0.9427361064", + "0.9715947085", + "0.9777169571", + "1.034506329", + "0.9878364471", + "0.9943500929", + "0.9991324389", + "0.9803810782", + "1.0066276251", + "1.0739053271", + "1.0804594913", + "1.1082450063", + "1.1212479965", + "1.1178682965", + "0.9965052161", + "1.0235495232", + "0.9868385677", + "0.9922557862", + "1.0442403981", + "1.0765536194", + "1.0684889978", + "1.0769044612", + "1.0639991185", + "1.0511060325", + "1.0556525205", + "1.1092778124", + "1.1646636338", + "1.261420955", + "1.1745453729", + "1.173915068", + "1.2017408197", + "1.13912846", + "1.2059745793", + "1.2010206528", + "1.1659955521", + "1.1752590178", + "1.0705451367", + "1.362102202", + "1.2882568933", + "1.2974459137", + "1.2249555414", + "1.237246383", + "1.2268612835", + "1.3290648926", + "1.2562965304", + "1.2944841453", + "1.2885670195", + "1.2664515015", + "1.195678715", + "1.1984235585", + "1.2430821086", + "1.236842867", + "1.2414316676", + "1.2068300798", + "1.1984110553", + "1.1903742139", + "1.2500233354", + "1.2088519795", + "1.2165206819", + "1.1870415107", + "1.1397884304", + "1.2433510827", + "1.1814351938", + "1.1745685491", + "1.194796781", + "1.2709410386", + "1.2832125972", + "1.2918014604", + "1.2869136918", + "1.2807089654", + "1.2705491706", + "1.2695672818", + "1.2629141999", + "1.3811090774", + "1.3619923525", + "1.2359274724", + "1.2852128154", + "1.2851401335", + "1.2787809051", + "1.2812936756", + "1.3473761757", + "1.3419261533", + "1.2968046139", + "1.2827692703", + "1.2801163682", + "1.2686202842", + "1.2873536779", + "1.2558300537", + "1.2467859034", + "1.2426243435", + "1.2581850374", + "1.2536553483", + "1.2445534006", + "1.251123315", + "1.2657986288", + "1.2805492013", + "1.2894835681", + "1.3159482558", + "1.2674788633", + "1.291490631", + "1.3024156546", + "1.2461040092", + "1.3004237483", + "1.275355896", + "1.2512933069", + "1.2507945361", + "1.2584878532", + "1.2524527435", + "1.2255848204", + "1.2335298785", + "1.2366720879", + "1.2079523724" + ] + }, + "essential_compounds": [ + "26dap_M", + "ac", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arbt", + "arg_L", + "asn_L", + "asp_L", + "but", + "ca2", + "cd2", + "cellb", + "cgly", + "cl", + "co2", + "cobalt2", + "cro4", + "csn", + "cu2", + "cys_L", + "dad_2", + "dpcoa", + "fe2", + "fe3", + "for", + "fru", + "galt", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "h2o", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "k", + "lac_L", + "leu_L", + "lys_L", + "malt", + "man", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "na1", + "nac", + "nh4", + "nmn", + "no3", + "o2", + "pb", + "phe_L", + "pi", + "pnto_R", + "pro_L", + "ptrc", + "pydx", + "ribflv", + "salcn", + "ser_L", + "so4", + "spmd", + "strch1", + "strch2", + "sucr", + "taur", + "thr_L", + "thymd", + "trp_L", + "tyr_L", + "ura", + "urea", + "val_L", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_449.json b/agents/agora/agent_449.json new file mode 100644 index 0000000000000000000000000000000000000000..06519b1975c68519ae37620ff3630bfeeb5d10cc --- /dev/null +++ b/agents/agora/agent_449.json @@ -0,0 +1,949 @@ +{ + "id": 449, + "name": "Helicobacter_canadensis_MIT_98_5491", + "N_R": 1183, + "taxonomy": { + "k": 449, + "tax_distance": [ + "2.4317716465", + "2.0138937792", + "2.0071945501", + "2.2337772572", + "1.9151771833", + "1.9603058702", + "1.9416005724", + "1.9386579781", + "2.0026395764", + "1.9209954845", + "1.9380601879", + "2.0461825017", + "2.01920028", + "2.2472142379", + "2.295571055", + "2.3259035656", + "2.2062531677", + "2.2151772845", + "2.2506517601", + "1.7836360761", + "1.7189650994", + "1.4684438407", + "1.4017934083", + "1.2803137316", + "1.1061344528", + "1.1003232447", + "1.0969686733", + "1.0993297277", + "1.0835634377", + "1.0748776748", + "1.0773285809", + "1.178914517", + "1.1884523198", + "1.1848184098", + "1.2005144784", + "1.1690128984", + "1.1917588425", + "1.210064754", + "1.191032791", + "1.48397345", + "1.2288150713", + "1.1474540153", + "1.1542193215", + "1.1568269016", + "1.1535951596", + "1.1565685413", + "1.1516699364", + "1.1520549717", + "1.1462400609", + "1.1382788713", + "1.0798566933", + "1.0853690933", + "1.07962826", + "1.0517819894", + "1.0583037335", + "1.0874057307", + "1.0613288439", + "1.0593128163", + "1.0800672219", + "1.0777273272", + "1.0609854997", + "1.0863362713", + "1.0884110611", + "1.0870801679", + "1.1014713854", + "1.1031935473", + "1.1031935473", + "1.10983913", + "1.10983913", + "1.10983913", + "1.10983913", + "1.10983913", + "1.10983913", + "1.10983913", + "1.10983913", + "1.1057597673", + "1.1061055045", + "1.0996737969", + "1.1101662715", + "1.1092610296", + "1.10536286", + "1.1036201864", + "1.1049387562", + "1.1014368757", + "1.0963591274", + "1.099704253", + "1.1051500198", + "1.1006118281", + "1.085611872", + "1.0939829869", + "1.0887076017", + "1.1048555427", + "1.1001582535", + "1.1042918228", + "1.0822521122", + "1.0768519284", + "1.0909182835", + "1.1015786925", + "1.1183757355", + "1.1007854453", + "1.0907903268", + "1.0894725092", + "1.0702221293", + "1.0831006183", + "1.1419730633", + "1.1368211516", + "1.2037174089", + "1.1698781529", + "1.1070695121", + "1.1107957689", + "1.113529236", + "1.1064251545", + "1.1064251545", + "1.0878012523", + "1.0907053986", + "1.0826048819", + "1.1181305806", + "1.0549080311", + "1.0328171177", + "1.050681474", + "1.0374104787", + "1.0378360711", + "1.1560877847", + "1.1632782355", + "1.1847192484", + "0.9893155327", + "1.159064486", + "1.1657397201", + "1.1503766278", + "1.170010633", + "1.159197719", + "1.1642642053", + "1.1557679277", + "1.1488178226", + "1.1396881255", + "1.1403462459", + "1.1592601691", + "1.1323787252", + "1.1144145147", + "1.2083024556", + "1.2096763293", + "1.178987917", + "1.2365676076", + "1.1741461951", + "1.1796401379", + "1.1766791128", + "1.2013860979", + "1.1905636491", + "1.0987205771", + "1.0698104876", + "1.0309994276", + "1.0088981344", + "1.0002563281", + "0.995136137", + "1.0320077627", + "1.0345028886", + "1.0063148197", + "0.9946768658", + "0.9982633748", + "1.0672164856", + "1.0739248677", + "1.0435539211", + "1.1674719943", + "1.1619570989", + "1.1642981501", + "1.1220212239", + "1.1181672444", + "1.1560738181", + "1.1478970038", + "1.1166549813", + "1.11821434", + "1.1362343337", + "1.092929539", + "1.08209341", + "1.0832539625", + "1.1167403039", + "1.1049167512", + "1.086289894", + "1.1052785163", + "1.0866105176", + "1.1004254598", + "1.0946428888", + "1.0935745068", + "1.1141329585", + "1.1099204111", + "1.0928013657", + "1.1270297397", + "1.111795498", + "1.116907807", + "1.1163011215", + "1.0806994911", + "1.0766792829", + "1.0612119313", + "1.0795584365", + "1.0764920617", + "1.0508004679", + "1.03378772", + "1.0284800691", + "1.0332218537", + "1.032363243", + "1.0651292029", + "1.0641485411", + "1.0881883387", + "1.0660793117", + "1.0265713197", + "1.0297357305", + "1.0547976225", + "1.0510887384", + "1.0268381217", + "1.0193807718", + "1.0217340311", + "1.030911566", + "0.9566774691", + "0.9992805699", + "0.9835767992", + "0.977415036", + "0.9711347912", + "0.9590321736", + "0.962202513", + "1.0043746024", + "1.4387664336", + "1.5235446327", + "1.4360800576", + "1.4212623455", + "1.3995897127", + "0.9532673716", + "0.9720717776", + "1.0220046427", + "0.9836438907", + "0.9988810937", + "1.1124182313", + "1.0661888384", + "1.0878405126", + "1.0465071665", + "0.959845478", + "0.9722278209", + "0.9787188921", + "1.0391454289", + "1.0303458963", + "1.0284271653", + "1.0544294464", + "1.0517370108", + "1.0429689552", + "1.0744895788", + "1.0825730433", + "1.0667617701", + "1.0401435203", + "1.0347979472", + "1.0402086231", + "1.0289154819", + "0.9738845871", + "0.978969409", + "0.9782141855", + "1.02502577", + "0.9804554906", + "0.9629072922", + "1.0403320984", + "0.9935994586", + "0.9686819961", + "0.9817174873", + "0.9523329737", + "0.9175466155", + "1.0016346513", + "1.0039884377", + "1.0087656474", + "1.0141112454", + "0.9798102196", + "1.0404659689", + "1.0473020843", + "1.0438130818", + "1.0564781472", + "1.0425621044", + "1.0223461982", + "1.0137454295", + "1.0603972977", + "1.0796755704", + "1.1303545903", + "0.9732769741", + "0.94244968", + "1.0354553939", + "1.034438694", + "1.0216596183", + "0.9785843312", + "1.0434076454", + "1.0343508932", + "1.0370031555", + "1.0681424608", + "1.0098013276", + "0.9950676248", + "0.9766924965", + "1.0050081352", + "0.9765152099", + "1.0316611272", + "1.0626545272", + "1.085287375", + "1.041971198", + "1.0133174095", + "1.0335643062", + "1.0133179178", + "0.9997039429", + "0.964448872", + "0.9993984315", + "0.9304879556", + "0.9477533266", + "1.0305620376", + "1.0189273768", + "1.0160289505", + "1.0261832577", + "1.0345461432", + "1.023868782", + "1.0358093496", + "1.0242758921", + "1.0218143855", + "0.9902252539", + "0.9962201597", + "1.0024781569", + "0.9896326115", + "1.0231712484", + "0.9554004601", + "1.0138984004", + "1.0110431678", + "1.0012837003", + "1.0005088239", + "1.0266509487", + "1.0032597119", + "0.9729535739", + "0.8876254745", + "0.8994300193", + "0.9004472952", + "0.844470518", + "0.8565974385", + "0.8533090365", + "0.8346348374", + "0.8433167891", + "0.8392760022", + "0.8293128524", + "0.855113879", + "0.8518025423", + "0.815173264", + "0.8337116967", + "0.7914704377", + "0.7941493765", + "0.8081397918", + "0.8096409015", + "0.7963110564", + "0.7857896623", + "0.8125440946", + "0.7984671475", + "0.7584608504", + "0.765824386", + "0.9353919495", + "0.7557254407", + "0.760269795", + "0.7638735689", + "0.7598209607", + "0.726938934", + "0.7567476088", + "0.776806851", + "0.7787995747", + "0.7768819753", + "0.7601988863", + "0.7590389567", + "0.7248025469", + "0.7270783484", + "0.8529617419", + "0.864156098", + "0.7504428737", + "0.7561002855", + "0.7461715939", + "0.7103034133", + "0.7359118102", + "0.7266466957", + "0.7187819479", + "0.7179280175", + "0.7254525734", + "0.7194450996", + "0.7385140185", + "0.7324377017", + "0.7441600525", + "0.7389272767", + "0.7257110275", + "0.7137773258", + "0.7234380517", + "0.7192845674", + "0.72518687", + "0.7172385252", + "0.6926779895", + "0.702090956", + "0.6959225406", + "0.7239537282", + "0.7216487806", + "0.7139297007", + "0.7277608235", + "0.7404529342", + "0.7713719069", + "0.7749958058", + "0.7637826626", + "0.7798330605", + "0.7603829727", + "0.7568062716", + "0.7737233305", + "0.7635243223", + "0.7680830941", + "0.7761361158", + "0.7619212793", + "0.7537460727", + "0.8138370522", + "0.7902992789", + "0.7906163049", + "0.7912597188", + "0.7857671241", + "0.7758725", + "0.8360495764", + "0.8069584435", + "0.7292012095", + "0.7480162289", + "0.7677819871", + "0.7438916774", + "0.7255950521", + "0.7070651662", + "0.7233703577", + "0.7307267579", + "0.7131249349", + "0.7686330007", + "0.7748042578", + "0.7785219153", + "0.8137840069", + "0.7677956249", + "0.7934714326", + "0.6784351696", + "0.6613167315", + "0.7643444976", + "0.7753331862", + "0.7094044767", + "0.7106813531", + "0.6688645052", + "0.6852836762", + "0.6160384237", + "0.6397775531", + "0.6272020919", + "0.6049992722", + "0.3683606739", + "0.3746600095", + "0.3546617041", + "0.36719015", + "0.3657161523", + "0.2975889963", + "0.3073881358", + "0.0", + "0.0993588759", + "0.0741716966", + "0.1854659496", + "0.3675003454", + "0.3792989461", + "0.3789923959", + "0.4098082913", + "0.4101659871", + "0.5131378704", + "0.7333845496", + "0.7379681908", + "0.7477117668", + "0.7274733109", + "0.6891686307", + "0.7585621275", + "0.739525804", + "0.7443874922", + "0.6811756458", + "0.7128877592", + "0.7215238179", + "0.7331815721", + "0.7156170326", + "0.702252717", + "0.6666197354", + "0.665705363", + "0.6721720528", + "0.7480103355", + "0.7281268478", + "0.8035097462", + "0.7575201931", + "0.7118626164", + "0.7180676533", + "0.7230079427", + "0.717699284", + "0.711897683", + "0.739337952", + "0.7214814882", + "0.7134319946", + "0.7044190276", + "0.7263565046", + "0.7208546598", + "0.7224885518", + "0.6864384607", + "0.6885949321", + "0.6617207192", + "0.7449844097", + "0.7207226334", + "0.7060808198", + "0.6863494739", + "0.8220731646", + "0.8253329729", + "0.8532399542", + "0.8078757752", + "0.8119790912", + "0.8260275707", + "0.8397440365", + "0.8633832577", + "0.804578566", + "0.7825923981", + "0.8111986306", + "0.779449286", + "0.7827631113", + "0.7957303581", + "0.7760849932", + "0.7833473374", + "0.7689824845", + "0.7648940556", + "0.8466376883", + "0.8388291539", + "0.7931483444", + "0.8139153071", + "0.8105960364", + "0.8638053959", + "0.7912037502", + "0.7754149733", + "0.7930475002", + "0.7938706159", + "0.7953004781", + "0.8207214481", + "0.8326460975", + "0.8911101177", + "0.8944965119", + "0.8775421894", + "0.8627743271", + "0.8435481942", + "0.8126823149", + "1.1739643767", + "1.1984048532", + "1.1622495747", + "1.1729001794", + "1.1501446449", + "1.136393024", + "1.2267414095", + "1.2555855946", + "1.2567035168", + "1.1809726522", + "1.1785047769", + "1.1785714925", + "1.1723615983", + "1.1904488069", + "1.1664659511", + "1.1423181206", + "1.1051150107", + "1.1132580083", + "1.0914394297", + "1.1121710792", + "1.0704555089", + "1.0849430418", + "1.086595468", + "1.092211309", + "1.0847184936", + "1.0842530945", + "1.0815139466", + "1.0718163195", + "1.0895235418", + "1.0696699062", + "1.0721170571", + "1.0678572227", + "1.0825156697", + "1.1016157718", + "1.0449136531", + "1.0673144273", + "1.0753520581", + "1.0744941485", + "1.0577508031", + "1.0469729636", + "1.0471041213", + "1.0517967689", + "1.0551135427", + "1.0878341547", + "1.1190362432", + "1.1139642653", + "1.0379059948", + "1.0387972798", + "1.0340489681", + "1.0400982182", + "0.9611299002", + "0.8580865831", + "0.8717190961", + "1.1109461978", + "1.3187968236", + "1.0724373867", + "1.1329526722", + "1.1343446212", + "1.1102080138", + "1.117886517", + "1.140606908", + "1.1304084401", + "1.1478175361", + "1.1489715975", + "1.1455342675", + "1.1451953091", + "1.1719797814", + "1.1419372637", + "1.1455765422", + "1.1494011237", + "1.1496206575", + "1.1129732931", + "1.1178496083", + "1.1388956484", + "1.1193478354", + "1.1266885825", + "1.0785999971", + "1.0710480914", + "1.1017606724", + "1.0979364254", + "1.1102855176", + "1.1151431534", + "1.1097877991", + "1.1093512289", + "1.1004023577", + "1.1124187779", + "1.0900680366", + "1.1060165552", + "1.1147292943", + "1.1104440124", + "1.1186415788", + "1.1338978003", + "1.1293671478", + "1.0704614438", + "1.108211954", + "1.0987133506", + "1.0608074219", + "1.3309827494", + "1.3636194072", + "1.3290959679", + "1.3377748214", + "1.3116652776", + "1.1254554377", + "0.9787256658", + "0.9707582405", + "1.0240933516", + "0.9873654369", + "0.992405928", + "0.9901753299", + "0.9778289092", + "0.9827715103", + "0.9360212258", + "0.9913167019", + "0.9856789506", + "1.0311643735", + "1.0092595517", + "1.0016143155", + "0.9889444415", + "0.9018333062", + "0.9057509223", + "1.0139056475", + "0.9964616512", + "1.0004089637", + "0.9952213127", + "0.9678051799", + "1.0568805449", + "1.004450111", + "1.0044964859", + "1.1015453558", + "1.1320923186", + "1.0875041323", + "1.0944965037", + "1.0672601589", + "1.0726479571", + "1.0718150792", + "1.0639817636", + "1.0066023817", + "1.155216134", + "1.2093811015", + "1.1764040248", + "1.1656024239", + "1.1729083385", + "1.1135034999", + "1.1261043308", + "1.1331619438", + "1.1283999115", + "1.177762953", + "1.1837498252", + "1.1931486743", + "1.2052400545", + "1.1404160945", + "1.1822048156", + "1.1803363993", + "1.1067508371", + "1.1048785661", + "1.1330743398", + "1.1261777089", + "1.1779964602", + "1.081672349", + "1.0270016906", + "1.0448154215", + "1.0075600257", + "1.0399597532", + "1.123190514", + "1.1364328702", + "1.1513490976", + "1.1665855048", + "1.0803541003", + "1.0127431494", + "1.0731258673", + "1.1458301616", + "0.9916646564", + "1.0205232585", + "1.0266455071", + "1.083434879", + "1.0367649971", + "1.0432786429", + "1.0480609889", + "1.0293096282", + "1.0555561751", + "1.1228338771", + "1.1293880413", + "1.1571735563", + "1.1701765465", + "1.1667968465", + "1.0454337661", + "1.0724780732", + "1.0357671177", + "1.0411843362", + "1.0931689481", + "1.1254821694", + "1.1174175478", + "1.1258330112", + "1.1129276685", + "1.1000345825", + "1.1045810705", + "1.1582063624", + "1.2135921838", + "1.310349505", + "1.2234739229", + "1.222843618", + "1.2506693697", + "1.18805701", + "1.2549031293", + "1.2499492028", + "1.2149241021", + "1.2241875678", + "1.1194736867", + "1.411030752", + "1.3371854433", + "1.3463744637", + "1.2738840914", + "1.286174933", + "1.2757898335", + "1.3779934426", + "1.3052250804", + "1.3434126953", + "1.3374955695", + "1.3153800515", + "1.244607265", + "1.2473521085", + "1.2920106586", + "1.285771417", + "1.2903602176", + "1.2557586298", + "1.2473396053", + "1.2393027639", + "1.2989518854", + "1.2577805295", + "1.2654492319", + "1.2359700607", + "1.1887169804", + "1.2922796327", + "1.2303637438", + "1.2234970991", + "1.243725331", + "1.3198695886", + "1.3321411472", + "1.3407300104", + "1.3358422418", + "1.3296375154", + "1.3194777206", + "1.3184958318", + "1.3118427499", + "1.4300376274", + "1.4109209025", + "1.2848560224", + "1.3341413654", + "1.3340686835", + "1.3277094551", + "1.3302222256", + "1.3963047257", + "1.3908547033", + "1.3457331639", + "1.3316978203", + "1.3290449182", + "1.3175488342", + "1.3362822279", + "1.3047586037", + "1.2957144534", + "1.2915528935", + "1.3071135874", + "1.3025838983", + "1.2934819506", + "1.300051865", + "1.3147271788", + "1.3294777513", + "1.3384121181", + "1.3648768058", + "1.3164074133", + "1.340419181", + "1.3513442046", + "1.2950325592", + "1.3493522983", + "1.324284446", + "1.3002218569", + "1.2997230861", + "1.3074164032", + "1.3013812935", + "1.2745133704", + "1.2824584285", + "1.2856006379", + "1.2568809224" + ] + }, + "essential_compounds": [ + "12dgr180", + "26dap_M", + "2dmmq8", + "2obut", + "C02528", + "ac", + "acald", + "acgam", + "ade", + "adn", + "adocbl", + "ala_L", + "amp", + "arab_L", + "arbt", + "arg_L", + "arsenb", + "asp_L", + "btn", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cgly", + "cholate", + "cl", + "co2", + "cobalt2", + "cro4", + "csn", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dgchol", + "dgsn", + "etoh", + "fe2", + "fe3", + "fol", + "for", + "fru", + "fum", + "gal", + "galt", + "gam", + "gcald", + "gchola", + "glc_D", + "glcn", + "gln_L", + "glu_L", + "gly", + "glyb", + "glyc", + "gthrd", + "gua", + "h2", + "h2o", + "h2s", + "h", + "hg2", + "hxan", + "k", + "lac_D", + "lac_L", + "lys_L", + "malt", + "malthx", + "malttr", + "man", + "melib", + "met_L", + "mg2", + "mn2", + "mnl", + "mqn8", + "na1", + "nac", + "nh4", + "no3", + "o2", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "ppa", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "pyr", + "q8", + "ribflv", + "salcn", + "sbt_D", + "ser_L", + "sheme", + "so4", + "spmd", + "succ", + "sucr", + "taur", + "tchola", + "tdchola", + "thm", + "thr_L", + "thymd", + "tre", + "tsul", + "tym", + "tyr_L", + "ura", + "val_L", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_450.json b/agents/agora/agent_450.json new file mode 100644 index 0000000000000000000000000000000000000000..9fe92bab39143284a17519037f9eaf6a74e173a3 --- /dev/null +++ b/agents/agora/agent_450.json @@ -0,0 +1,962 @@ +{ + "id": 450, + "name": "Helicobacter_cinaedi_CCUG_18818", + "N_R": 1395, + "taxonomy": { + "k": 450, + "tax_distance": [ + "2.4671958096", + "2.0493179423", + "2.0426187132", + "2.2692014203", + "1.9506013464", + "1.9957300333", + "1.9770247355", + "1.9740821412", + "2.0380637395", + "1.9564196476", + "1.973484351", + "2.0816066648", + "2.0546244431", + "2.282638401", + "2.3309952181", + "2.3613277287", + "2.2416773308", + "2.2506014476", + "2.2860759232", + "1.8190602392", + "1.7543892625", + "1.5038680038", + "1.4372175714", + "1.3157378947", + "1.1415586159", + "1.1357474078", + "1.1323928364", + "1.1347538908", + "1.1189876008", + "1.1103018379", + "1.112752744", + "1.2143386801", + "1.2238764829", + "1.2202425729", + "1.2359386415", + "1.2044370615", + "1.2271830056", + "1.2454889171", + "1.2264569541", + "1.5193976131", + "1.2642392344", + "1.1828781784", + "1.1896434846", + "1.1922510647", + "1.1890193227", + "1.1919927044", + "1.1870940995", + "1.1874791348", + "1.181664224", + "1.1737030344", + "1.1152808564", + "1.1207932564", + "1.1150524231", + "1.0872061525", + "1.0937278966", + "1.1228298938", + "1.096753007", + "1.0947369794", + "1.115491385", + "1.1131514903", + "1.0964096628", + "1.1217604344", + "1.1238352242", + "1.122504331", + "1.1368955485", + "1.1386177104", + "1.1386177104", + "1.1452632931", + "1.1452632931", + "1.1452632931", + "1.1452632931", + "1.1452632931", + "1.1452632931", + "1.1452632931", + "1.1452632931", + "1.1411839304", + "1.1415296676", + "1.13509796", + "1.1455904346", + "1.1446851927", + "1.1407870231", + "1.1390443495", + "1.1403629193", + "1.1368610388", + "1.1317832905", + "1.1351284161", + "1.1405741829", + "1.1360359912", + "1.1210360351", + "1.12940715", + "1.1241317648", + "1.1402797058", + "1.1355824166", + "1.1397159859", + "1.1176762753", + "1.1122760915", + "1.1263424466", + "1.1370028556", + "1.1537998986", + "1.1362096084", + "1.1262144899", + "1.1248966723", + "1.1056462924", + "1.1185247814", + "1.1773972264", + "1.1722453147", + "1.239141572", + "1.205302316", + "1.1424936752", + "1.146219932", + "1.1489533991", + "1.1418493176", + "1.1418493176", + "1.1232254154", + "1.1261295617", + "1.118029045", + "1.1535547437", + "1.0903321942", + "1.0682412808", + "1.0861056371", + "1.0728346418", + "1.0732602342", + "1.1915119478", + "1.1987023986", + "1.2201434115", + "1.0247396958", + "1.1944886491", + "1.2011638832", + "1.1858007909", + "1.2054347961", + "1.1946218821", + "1.1996883684", + "1.1911920908", + "1.1842419857", + "1.1751122886", + "1.175770409", + "1.1946843322", + "1.1678028883", + "1.1498386778", + "1.2437266187", + "1.2451004924", + "1.2144120801", + "1.2719917707", + "1.2095703582", + "1.215064301", + "1.2121032759", + "1.236810261", + "1.2259878122", + "1.1341447402", + "1.1052346507", + "1.0664235907", + "1.0443222975", + "1.0356804912", + "1.0305603001", + "1.0674319258", + "1.0699270517", + "1.0417389828", + "1.0301010289", + "1.0336875379", + "1.1026406487", + "1.1093490308", + "1.0789780842", + "1.2028961574", + "1.197381262", + "1.1997223132", + "1.157445387", + "1.1535914075", + "1.1914979812", + "1.1833211669", + "1.1520791444", + "1.1536385031", + "1.1716584968", + "1.1283537021", + "1.1175175731", + "1.1186781256", + "1.152164467", + "1.1403409143", + "1.1217140571", + "1.1407026794", + "1.1220346807", + "1.1358496229", + "1.1300670519", + "1.1289986699", + "1.1495571216", + "1.1453445742", + "1.1282255288", + "1.1624539028", + "1.1472196611", + "1.1523319701", + "1.1517252846", + "1.1161236542", + "1.112103446", + "1.0966360944", + "1.1149825996", + "1.1119162248", + "1.086224631", + "1.0692118831", + "1.0639042322", + "1.0686460168", + "1.0677874061", + "1.100553366", + "1.0995727042", + "1.1236125018", + "1.1015034748", + "1.0619954828", + "1.0651598936", + "1.0902217856", + "1.0865129015", + "1.0622622848", + "1.0548049349", + "1.0571581942", + "1.0663357291", + "0.9921016322", + "1.034704733", + "1.0190009623", + "1.0128391991", + "1.0065589543", + "0.9944563367", + "0.9976266761", + "1.0397987655", + "1.4741905967", + "1.5589687958", + "1.4715042207", + "1.4566865086", + "1.4350138758", + "0.9886915347", + "1.0074959407", + "1.0574288058", + "1.0190680538", + "1.0343052568", + "1.1478423944", + "1.1016130015", + "1.1232646757", + "1.0819313296", + "0.9952696411", + "1.007651984", + "1.0141430552", + "1.074569592", + "1.0657700594", + "1.0638513284", + "1.0898536095", + "1.0871611739", + "1.0783931183", + "1.1099137419", + "1.1179972064", + "1.1021859332", + "1.0755676834", + "1.0702221103", + "1.0756327862", + "1.064339645", + "1.0093087502", + "1.0143935721", + "1.0136383486", + "1.0604499331", + "1.0158796537", + "0.9983314553", + "1.0757562615", + "1.0290236217", + "1.0041061592", + "1.0171416504", + "0.9877571368", + "0.9529707786", + "1.0370588144", + "1.0394126008", + "1.0441898105", + "1.0495354085", + "1.0152343827", + "1.075890132", + "1.0827262474", + "1.0792372449", + "1.0919023103", + "1.0779862675", + "1.0577703613", + "1.0491695926", + "1.0958214608", + "1.1150997335", + "1.1657787534", + "1.0087011372", + "0.9778738431", + "1.070879557", + "1.0698628571", + "1.0570837814", + "1.0140084943", + "1.0788318085", + "1.0697750563", + "1.0724273186", + "1.1035666239", + "1.0452254907", + "1.0304917879", + "1.0121166596", + "1.0404322983", + "1.011939373", + "1.0670852903", + "1.0980786903", + "1.1207115381", + "1.0773953611", + "1.0487415726", + "1.0689884693", + "1.0487420809", + "1.035128106", + "0.9998730351", + "1.0348225946", + "0.9659121187", + "0.9831774897", + "1.0659862007", + "1.0543515399", + "1.0514531136", + "1.0616074208", + "1.0699703063", + "1.0592929451", + "1.0712335127", + "1.0597000552", + "1.0572385486", + "1.025649417", + "1.0316443228", + "1.03790232", + "1.0250567746", + "1.0585954115", + "0.9908246232", + "1.0493225635", + "1.0464673309", + "1.0367078634", + "1.035932987", + "1.0620751118", + "1.038683875", + "1.008377737", + "0.9230496376", + "0.9348541824", + "0.9358714583", + "0.8798946811", + "0.8920216016", + "0.8887331996", + "0.8700590005", + "0.8787409522", + "0.8747001653", + "0.8647370155", + "0.8905380421", + "0.8872267054", + "0.8505974271", + "0.8691358598", + "0.8268946008", + "0.8295735396", + "0.8435639549", + "0.8450650646", + "0.8317352195", + "0.8212138254", + "0.8479682577", + "0.8338913106", + "0.7938850135", + "0.8012485491", + "0.9708161126", + "0.7911496038", + "0.7956939581", + "0.799297732", + "0.7952451238", + "0.7623630971", + "0.7921717719", + "0.8122310141", + "0.8142237378", + "0.8123061384", + "0.7956230494", + "0.7944631198", + "0.76022671", + "0.7625025115", + "0.888385905", + "0.8995802611", + "0.7858670368", + "0.7915244486", + "0.781595757", + "0.7457275764", + "0.7713359733", + "0.7620708588", + "0.754206111", + "0.7533521806", + "0.7608767365", + "0.7548692627", + "0.7739381816", + "0.7678618648", + "0.7795842156", + "0.7743514398", + "0.7611351906", + "0.7492014889", + "0.7588622148", + "0.7547087305", + "0.7606110331", + "0.7526626883", + "0.7281021526", + "0.7375151191", + "0.7313467037", + "0.7593778913", + "0.7570729437", + "0.7493538638", + "0.7631849866", + "0.7758770973", + "0.80679607", + "0.8104199689", + "0.7992068257", + "0.8152572236", + "0.7958071358", + "0.7922304347", + "0.8091474936", + "0.7989484854", + "0.8035072572", + "0.8115602789", + "0.7973454424", + "0.7891702358", + "0.8492612153", + "0.825723442", + "0.826040468", + "0.8266838819", + "0.8211912872", + "0.8112966631", + "0.8714737395", + "0.8423826066", + "0.7646253726", + "0.783440392", + "0.8032061502", + "0.7793158405", + "0.7610192152", + "0.7424893293", + "0.7587945208", + "0.766150921", + "0.748549098", + "0.8040571638", + "0.8102284209", + "0.8139460784", + "0.84920817", + "0.803219788", + "0.8288955957", + "0.7138593327", + "0.6967408946", + "0.7997686607", + "0.8107573493", + "0.7448286398", + "0.7461055162", + "0.7042886683", + "0.7207078393", + "0.6514625868", + "0.6752017162", + "0.662626255", + "0.6404234353", + "0.403784837", + "0.4100841726", + "0.3900858672", + "0.4026143131", + "0.4011403154", + "0.3330131594", + "0.3428122989", + "0.0993588759", + "0.0", + "0.0853366649", + "0.2208901127", + "0.4029245085", + "0.4147231092", + "0.414416559", + "0.4452324544", + "0.4455901502", + "0.5485620335", + "0.7688087127", + "0.7733923539", + "0.7831359299", + "0.762897474", + "0.7245927938", + "0.7939862906", + "0.7749499671", + "0.7798116553", + "0.7165998089", + "0.7483119223", + "0.756947981", + "0.7686057352", + "0.7510411957", + "0.7376768801", + "0.7020438985", + "0.7011295261", + "0.7075962159", + "0.7834344986", + "0.7635510109", + "0.8389339093", + "0.7929443562", + "0.7472867795", + "0.7534918164", + "0.7584321058", + "0.7531234471", + "0.7473218461", + "0.7747621151", + "0.7569056513", + "0.7488561577", + "0.7398431907", + "0.7617806677", + "0.7562788229", + "0.7579127149", + "0.7218626238", + "0.7240190952", + "0.6971448823", + "0.7804085728", + "0.7561467965", + "0.7415049829", + "0.721773637", + "0.8574973277", + "0.860757136", + "0.8886641173", + "0.8432999383", + "0.8474032543", + "0.8614517338", + "0.8751681996", + "0.8988074208", + "0.8400027291", + "0.8180165612", + "0.8466227937", + "0.8148734491", + "0.8181872744", + "0.8311545212", + "0.8115091563", + "0.8187715005", + "0.8044066476", + "0.8003182187", + "0.8820618514", + "0.874253317", + "0.8285725075", + "0.8493394702", + "0.8460201995", + "0.899229559", + "0.8266279133", + "0.8108391364", + "0.8284716633", + "0.829294779", + "0.8307246412", + "0.8561456112", + "0.8680702606", + "0.9265342808", + "0.929920675", + "0.9129663525", + "0.8981984902", + "0.8789723573", + "0.848106478", + "1.2093885398", + "1.2338290163", + "1.1976737378", + "1.2083243425", + "1.185568808", + "1.1718171871", + "1.2621655726", + "1.2910097577", + "1.2921276799", + "1.2163968153", + "1.21392894", + "1.2139956556", + "1.2077857614", + "1.22587297", + "1.2018901142", + "1.1777422837", + "1.1405391738", + "1.1486821714", + "1.1268635928", + "1.1475952423", + "1.105879672", + "1.1203672049", + "1.1220196311", + "1.1276354721", + "1.1201426567", + "1.1196772576", + "1.1169381097", + "1.1072404826", + "1.1249477049", + "1.1050940693", + "1.1075412202", + "1.1032813858", + "1.1179398328", + "1.1370399349", + "1.0803378162", + "1.1027385904", + "1.1107762212", + "1.1099183116", + "1.0931749662", + "1.0823971267", + "1.0825282844", + "1.087220932", + "1.0905377058", + "1.1232583178", + "1.1544604063", + "1.1493884284", + "1.0733301579", + "1.0742214429", + "1.0694731312", + "1.0755223813", + "0.9965540633", + "0.8935107462", + "0.9071432592", + "1.1463703609", + "1.3542209867", + "1.1078615498", + "1.1683768353", + "1.1697687843", + "1.1456321769", + "1.1533106801", + "1.1760310711", + "1.1658326032", + "1.1832416992", + "1.1843957606", + "1.1809584306", + "1.1806194722", + "1.2074039445", + "1.1773614268", + "1.1810007053", + "1.1848252868", + "1.1850448206", + "1.1483974562", + "1.1532737714", + "1.1743198115", + "1.1547719985", + "1.1621127456", + "1.1140241602", + "1.1064722545", + "1.1371848355", + "1.1333605885", + "1.1457096807", + "1.1505673165", + "1.1452119622", + "1.144775392", + "1.1358265208", + "1.147842941", + "1.1254921997", + "1.1414407183", + "1.1501534574", + "1.1458681755", + "1.1540657419", + "1.1693219634", + "1.1647913109", + "1.1058856069", + "1.1436361171", + "1.1341375137", + "1.096231585", + "1.3664069125", + "1.3990435703", + "1.364520131", + "1.3731989845", + "1.3470894407", + "1.1608796008", + "1.0141498289", + "1.0061824036", + "1.0595175147", + "1.0227896", + "1.0278300911", + "1.025599493", + "1.0132530723", + "1.0181956734", + "0.9714453889", + "1.026740865", + "1.0211031137", + "1.0665885366", + "1.0446837148", + "1.0370384786", + "1.0243686046", + "0.9372574693", + "0.9411750854", + "1.0493298106", + "1.0318858143", + "1.0358331268", + "1.0306454758", + "1.003229343", + "1.092304708", + "1.0398742741", + "1.039920649", + "1.1369695189", + "1.1675164817", + "1.1229282954", + "1.1299206668", + "1.102684322", + "1.1080721202", + "1.1072392423", + "1.0994059267", + "1.0420265448", + "1.1906402971", + "1.2448052646", + "1.2118281879", + "1.201026587", + "1.2083325016", + "1.148927663", + "1.1615284939", + "1.1685861069", + "1.1638240746", + "1.2131871161", + "1.2191739883", + "1.2285728374", + "1.2406642176", + "1.1758402576", + "1.2176289787", + "1.2157605624", + "1.1421750002", + "1.1403027292", + "1.1684985029", + "1.161601872", + "1.2134206233", + "1.1170965121", + "1.0624258537", + "1.0802395846", + "1.0429841888", + "1.0753839163", + "1.1586146771", + "1.1718570333", + "1.1867732607", + "1.2020096679", + "1.1157782634", + "1.0481673125", + "1.1085500304", + "1.1812543247", + "1.0270888195", + "1.0559474216", + "1.0620696702", + "1.1188590421", + "1.0721891602", + "1.078702806", + "1.083485152", + "1.0647337913", + "1.0909803382", + "1.1582580402", + "1.1648122044", + "1.1925977194", + "1.2056007096", + "1.2022210096", + "1.0808579292", + "1.1079022363", + "1.0711912808", + "1.0766084993", + "1.1285931112", + "1.1609063325", + "1.1528417109", + "1.1612571743", + "1.1483518316", + "1.1354587456", + "1.1400052336", + "1.1936305255", + "1.2490163469", + "1.3457736681", + "1.258898086", + "1.2582677811", + "1.2860935328", + "1.2234811731", + "1.2903272924", + "1.2853733659", + "1.2503482652", + "1.2596117309", + "1.1548978498", + "1.4464549151", + "1.3726096064", + "1.3817986268", + "1.3093082545", + "1.3215990961", + "1.3112139966", + "1.4134176057", + "1.3406492435", + "1.3788368584", + "1.3729197326", + "1.3508042146", + "1.2800314281", + "1.2827762716", + "1.3274348217", + "1.3211955801", + "1.3257843807", + "1.2911827929", + "1.2827637684", + "1.274726927", + "1.3343760485", + "1.2932046926", + "1.300873395", + "1.2713942238", + "1.2241411435", + "1.3277037958", + "1.2657879069", + "1.2589212622", + "1.2791494941", + "1.3552937517", + "1.3675653103", + "1.3761541735", + "1.3712664049", + "1.3650616785", + "1.3549018837", + "1.3539199949", + "1.347266913", + "1.4654617905", + "1.4463450656", + "1.3202801855", + "1.3695655285", + "1.3694928466", + "1.3631336182", + "1.3656463887", + "1.4317288888", + "1.4262788664", + "1.381157327", + "1.3671219834", + "1.3644690813", + "1.3529729973", + "1.371706391", + "1.3401827668", + "1.3311386165", + "1.3269770566", + "1.3425377505", + "1.3380080614", + "1.3289061137", + "1.3354760281", + "1.3501513419", + "1.3649019144", + "1.3738362812", + "1.4003009689", + "1.3518315764", + "1.3758433441", + "1.3867683677", + "1.3304567223", + "1.3847764614", + "1.3597086091", + "1.33564602", + "1.3351472492", + "1.3428405663", + "1.3368054566", + "1.3099375335", + "1.3178825916", + "1.321024801", + "1.2923050855" + ] + }, + "essential_compounds": [ + "12dgr180", + "13ppd", + "26dap_M", + "2dmmq8", + "2obut", + "3mop", + "ac", + "acgam", + "ade", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "amp", + "arab_L", + "arbt", + "asn_L", + "asp_L", + "btn", + "btoh", + "but", + "ca2", + "cd2", + "cgly", + "cl", + "co2", + "cobalt2", + "cro4", + "csn", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dgsn", + "drib", + "fe2", + "fe3", + "fol", + "for", + "fru", + "gal", + "galt", + "gam", + "gcald", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gthrd", + "gua", + "h2", + "h2o", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "inulin", + "k", + "kesto", + "kestopt", + "kestottr", + "lac_D", + "lac_L", + "leu_L", + "lys_L", + "malt", + "man", + "melib", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mobd", + "mqn8", + "n2", + "na1", + "nac", + "nh4", + "nmn", + "o2", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "pnto_R", + "ppa", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "q8", + "rib_D", + "salcn", + "sbt_D", + "ser_L", + "sheme", + "so4", + "spmd", + "succ", + "sucr", + "thm", + "thr_L", + "thymd", + "tre", + "tyr_L", + "ura", + "val_L", + "xan", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_451.json b/agents/agora/agent_451.json new file mode 100644 index 0000000000000000000000000000000000000000..f19c11134a6c2a913ac907694ce33d4a0b1227eb --- /dev/null +++ b/agents/agora/agent_451.json @@ -0,0 +1,982 @@ +{ + "id": 451, + "name": "Helicobacter_pullorum_MIT_98_5489", + "N_R": 951, + "taxonomy": { + "k": 451, + "tax_distance": [ + "2.4420086303", + "2.024130763", + "2.0174315339", + "2.244014241", + "1.9254141671", + "1.970542854", + "1.9518375562", + "1.9488949619", + "2.0128765602", + "1.9312324683", + "1.9482971717", + "2.0564194855", + "2.0294372638", + "2.2574512217", + "2.3058080388", + "2.3361405494", + "2.2164901515", + "2.2254142683", + "2.2608887439", + "1.7938730599", + "1.7292020832", + "1.4786808245", + "1.4120303921", + "1.2905507154", + "1.1163714366", + "1.1105602285", + "1.1072056571", + "1.1095667115", + "1.0938004215", + "1.0851146586", + "1.0875655647", + "1.1891515008", + "1.1986893036", + "1.1950553936", + "1.2107514622", + "1.1792498822", + "1.2019958263", + "1.2203017378", + "1.2012697748", + "1.4942104338", + "1.2390520551", + "1.1576909991", + "1.1644563053", + "1.1670638854", + "1.1638321434", + "1.1668055251", + "1.1619069202", + "1.1622919555", + "1.1564770447", + "1.1485158551", + "1.0900936771", + "1.0956060771", + "1.0898652438", + "1.0620189732", + "1.0685407173", + "1.0976427145", + "1.0715658277", + "1.0695498001", + "1.0903042057", + "1.087964311", + "1.0712224835", + "1.0965732551", + "1.0986480449", + "1.0973171517", + "1.1117083692", + "1.1134305311", + "1.1134305311", + "1.1200761138", + "1.1200761138", + "1.1200761138", + "1.1200761138", + "1.1200761138", + "1.1200761138", + "1.1200761138", + "1.1200761138", + "1.1159967511", + "1.1163424883", + "1.1099107807", + "1.1204032553", + "1.1194980134", + "1.1155998438", + "1.1138571702", + "1.11517574", + "1.1116738595", + "1.1065961112", + "1.1099412368", + "1.1153870036", + "1.1108488119", + "1.0958488558", + "1.1042199707", + "1.0989445855", + "1.1150925265", + "1.1103952373", + "1.1145288066", + "1.092489096", + "1.0870889122", + "1.1011552673", + "1.1118156763", + "1.1286127193", + "1.1110224291", + "1.1010273106", + "1.099709493", + "1.0804591131", + "1.0933376021", + "1.1522100471", + "1.1470581354", + "1.2139543927", + "1.1801151367", + "1.1173064959", + "1.1210327527", + "1.1237662198", + "1.1166621383", + "1.1166621383", + "1.0980382361", + "1.1009423824", + "1.0928418657", + "1.1283675644", + "1.0651450149", + "1.0430541015", + "1.0609184578", + "1.0476474625", + "1.0480730549", + "1.1663247685", + "1.1735152193", + "1.1949562322", + "0.9995525165", + "1.1693014698", + "1.1759767039", + "1.1606136116", + "1.1802476168", + "1.1694347028", + "1.1745011891", + "1.1660049115", + "1.1590548064", + "1.1499251093", + "1.1505832297", + "1.1694971529", + "1.142615709", + "1.1246514985", + "1.2185394394", + "1.2199133131", + "1.1892249008", + "1.2468045914", + "1.1843831789", + "1.1898771217", + "1.1869160966", + "1.2116230817", + "1.2008006329", + "1.1089575609", + "1.0800474714", + "1.0412364114", + "1.0191351182", + "1.0104933119", + "1.0053731208", + "1.0422447465", + "1.0447398724", + "1.0165518035", + "1.0049138496", + "1.0085003586", + "1.0774534694", + "1.0841618515", + "1.0537909049", + "1.1777089781", + "1.1721940827", + "1.1745351339", + "1.1322582077", + "1.1284042282", + "1.1663108019", + "1.1581339876", + "1.1268919651", + "1.1284513238", + "1.1464713175", + "1.1031665228", + "1.0923303938", + "1.0934909463", + "1.1269772877", + "1.115153735", + "1.0965268778", + "1.1155155001", + "1.0968475014", + "1.1106624436", + "1.1048798726", + "1.1038114906", + "1.1243699423", + "1.1201573949", + "1.1030383495", + "1.1372667235", + "1.1220324818", + "1.1271447908", + "1.1265381053", + "1.0909364749", + "1.0869162667", + "1.0714489151", + "1.0897954203", + "1.0867290455", + "1.0610374517", + "1.0440247038", + "1.0387170529", + "1.0434588375", + "1.0426002268", + "1.0753661867", + "1.0743855249", + "1.0984253225", + "1.0763162955", + "1.0368083035", + "1.0399727143", + "1.0650346063", + "1.0613257222", + "1.0370751055", + "1.0296177556", + "1.0319710149", + "1.0411485498", + "0.9669144529", + "1.0095175537", + "0.993813783", + "0.9876520198", + "0.981371775", + "0.9692691574", + "0.9724394968", + "1.0146115862", + "1.4490034174", + "1.5337816165", + "1.4463170414", + "1.4314993293", + "1.4098266965", + "0.9635043554", + "0.9823087614", + "1.0322416265", + "0.9938808745", + "1.0091180775", + "1.1226552151", + "1.0764258222", + "1.0980774964", + "1.0567441503", + "0.9700824618", + "0.9824648047", + "0.9889558759", + "1.0493824127", + "1.0405828801", + "1.0386641491", + "1.0646664302", + "1.0619739946", + "1.053205939", + "1.0847265626", + "1.0928100271", + "1.0769987539", + "1.0503805041", + "1.045034931", + "1.0504456069", + "1.0391524657", + "0.9841215709", + "0.9892063928", + "0.9884511693", + "1.0352627538", + "0.9906924744", + "0.973144276", + "1.0505690822", + "1.0038364424", + "0.9789189799", + "0.9919544711", + "0.9625699575", + "0.9277835993", + "1.0118716351", + "1.0142254215", + "1.0190026312", + "1.0243482292", + "0.9900472034", + "1.0507029527", + "1.0575390681", + "1.0540500656", + "1.066715131", + "1.0527990882", + "1.032583182", + "1.0239824133", + "1.0706342815", + "1.0899125542", + "1.1405915741", + "0.9835139579", + "0.9526866638", + "1.0456923777", + "1.0446756778", + "1.0318966021", + "0.988821315", + "1.0536446292", + "1.044587877", + "1.0472401393", + "1.0783794446", + "1.0200383114", + "1.0053046086", + "0.9869294803", + "1.015245119", + "0.9867521937", + "1.041898111", + "1.072891511", + "1.0955243588", + "1.0522081818", + "1.0235543933", + "1.04380129", + "1.0235549016", + "1.0099409267", + "0.9746858558", + "1.0096354153", + "0.9407249394", + "0.9579903104", + "1.0407990214", + "1.0291643606", + "1.0262659343", + "1.0364202415", + "1.044783127", + "1.0341057658", + "1.0460463334", + "1.0345128759", + "1.0320513693", + "1.0004622377", + "1.0064571435", + "1.0127151407", + "0.9998695953", + "1.0334082322", + "0.9656374439", + "1.0241353842", + "1.0212801516", + "1.0115206841", + "1.0107458077", + "1.0368879325", + "1.0134966957", + "0.9831905577", + "0.8978624583", + "0.9096670031", + "0.910684279", + "0.8547075018", + "0.8668344223", + "0.8635460203", + "0.8448718212", + "0.8535537729", + "0.849512986", + "0.8395498362", + "0.8653508628", + "0.8620395261", + "0.8254102478", + "0.8439486805", + "0.8017074215", + "0.8043863603", + "0.8183767756", + "0.8198778853", + "0.8065480402", + "0.7960266461", + "0.8227810784", + "0.8087041313", + "0.7686978342", + "0.7760613698", + "0.9456289333", + "0.7659624245", + "0.7705067788", + "0.7741105527", + "0.7700579445", + "0.7371759178", + "0.7669845926", + "0.7870438348", + "0.7890365585", + "0.7871189591", + "0.7704358701", + "0.7692759405", + "0.7350395307", + "0.7373153322", + "0.8631987257", + "0.8743930818", + "0.7606798575", + "0.7663372693", + "0.7564085777", + "0.7205403971", + "0.746148794", + "0.7368836795", + "0.7290189317", + "0.7281650013", + "0.7356895572", + "0.7296820834", + "0.7487510023", + "0.7426746855", + "0.7543970363", + "0.7491642605", + "0.7359480113", + "0.7240143096", + "0.7336750355", + "0.7295215512", + "0.7354238538", + "0.727475509", + "0.7029149733", + "0.7123279398", + "0.7061595244", + "0.734190712", + "0.7318857644", + "0.7241666845", + "0.7379978073", + "0.750689918", + "0.7816088907", + "0.7852327896", + "0.7740196464", + "0.7900700443", + "0.7706199565", + "0.7670432554", + "0.7839603143", + "0.7737613061", + "0.7783200779", + "0.7863730996", + "0.7721582631", + "0.7639830565", + "0.824074036", + "0.8005362627", + "0.8008532887", + "0.8014967026", + "0.7960041079", + "0.7861094838", + "0.8462865602", + "0.8171954273", + "0.7394381933", + "0.7582532127", + "0.7780189709", + "0.7541286612", + "0.7358320359", + "0.71730215", + "0.7336073415", + "0.7409637417", + "0.7233619187", + "0.7788699845", + "0.7850412416", + "0.7887588991", + "0.8240209907", + "0.7780326087", + "0.8037084164", + "0.6886721534", + "0.6715537153", + "0.7745814814", + "0.78557017", + "0.7196414605", + "0.7209183369", + "0.679101489", + "0.69552066", + "0.6262754075", + "0.6500145369", + "0.6374390757", + "0.615236256", + "0.3785976577", + "0.3848969933", + "0.3648986879", + "0.3774271338", + "0.3759531361", + "0.3078259801", + "0.3176251196", + "0.0741716966", + "0.0853366649", + "0.0", + "0.1957029334", + "0.3777373292", + "0.3895359299", + "0.3892293797", + "0.4200452751", + "0.4204029709", + "0.5233748542", + "0.7436215334", + "0.7482051746", + "0.7579487506", + "0.7377102947", + "0.6994056145", + "0.7687991113", + "0.7497627878", + "0.754624476", + "0.6914126296", + "0.723124743", + "0.7317608017", + "0.7434185559", + "0.7258540164", + "0.7124897008", + "0.6768567192", + "0.6759423468", + "0.6824090366", + "0.7582473193", + "0.7383638316", + "0.81374673", + "0.7677571769", + "0.7220996002", + "0.7283046371", + "0.7332449265", + "0.7279362678", + "0.7221346668", + "0.7495749358", + "0.731718472", + "0.7236689784", + "0.7146560114", + "0.7365934884", + "0.7310916436", + "0.7327255356", + "0.6966754445", + "0.6988319159", + "0.671957703", + "0.7552213935", + "0.7309596172", + "0.7163178036", + "0.6965864577", + "0.8323101484", + "0.8355699567", + "0.863476938", + "0.818112759", + "0.822216075", + "0.8362645545", + "0.8499810203", + "0.8736202415", + "0.8148155498", + "0.7928293819", + "0.8214356144", + "0.7896862698", + "0.7930000951", + "0.8059673419", + "0.786321977", + "0.7935843212", + "0.7792194683", + "0.7751310394", + "0.8568746721", + "0.8490661377", + "0.8033853282", + "0.8241522909", + "0.8208330202", + "0.8740423797", + "0.801440734", + "0.7856519571", + "0.803284484", + "0.8041075997", + "0.8055374619", + "0.8309584319", + "0.8428830813", + "0.9013471015", + "0.9047334957", + "0.8877791732", + "0.8730113109", + "0.853785178", + "0.8229192987", + "1.1842013605", + "1.208641837", + "1.1724865585", + "1.1831371632", + "1.1603816287", + "1.1466300078", + "1.2369783933", + "1.2658225784", + "1.2669405006", + "1.191209636", + "1.1887417607", + "1.1888084763", + "1.1825985821", + "1.2006857907", + "1.1767029349", + "1.1525551044", + "1.1153519945", + "1.1234949921", + "1.1016764135", + "1.122408063", + "1.0806924927", + "1.0951800256", + "1.0968324518", + "1.1024482928", + "1.0949554774", + "1.0944900783", + "1.0917509304", + "1.0820533033", + "1.0997605256", + "1.07990689", + "1.0823540409", + "1.0780942065", + "1.0927526535", + "1.1118527556", + "1.0551506369", + "1.0775514111", + "1.0855890419", + "1.0847311323", + "1.0679877869", + "1.0572099474", + "1.0573411051", + "1.0620337527", + "1.0653505265", + "1.0980711385", + "1.129273227", + "1.1242012491", + "1.0481429786", + "1.0490342636", + "1.0442859519", + "1.050335202", + "0.971366884", + "0.8683235669", + "0.8819560799", + "1.1211831816", + "1.3290338074", + "1.0826743705", + "1.143189656", + "1.144581605", + "1.1204449976", + "1.1281235008", + "1.1508438918", + "1.1406454239", + "1.1580545199", + "1.1592085813", + "1.1557712513", + "1.1554322929", + "1.1822167652", + "1.1521742475", + "1.155813526", + "1.1596381075", + "1.1598576413", + "1.1232102769", + "1.1280865921", + "1.1491326322", + "1.1295848192", + "1.1369255663", + "1.0888369809", + "1.0812850752", + "1.1119976562", + "1.1081734092", + "1.1205225014", + "1.1253801372", + "1.1200247829", + "1.1195882127", + "1.1106393415", + "1.1226557617", + "1.1003050204", + "1.116253539", + "1.1249662781", + "1.1206809962", + "1.1288785626", + "1.1441347841", + "1.1396041316", + "1.0806984276", + "1.1184489378", + "1.1089503344", + "1.0710444057", + "1.3412197332", + "1.373856391", + "1.3393329517", + "1.3480118052", + "1.3219022614", + "1.1356924215", + "0.9889626496", + "0.9809952243", + "1.0343303354", + "0.9976024207", + "1.0026429118", + "1.0004123137", + "0.988065893", + "0.9930084941", + "0.9462582096", + "1.0015536857", + "0.9959159344", + "1.0414013573", + "1.0194965355", + "1.0118512993", + "0.9991814253", + "0.91207029", + "0.9159879061", + "1.0241426313", + "1.006698635", + "1.0106459475", + "1.0054582965", + "0.9780421637", + "1.0671175287", + "1.0146870948", + "1.0147334697", + "1.1117823396", + "1.1423293024", + "1.0977411161", + "1.1047334875", + "1.0774971427", + "1.0828849409", + "1.082052063", + "1.0742187474", + "1.0168393655", + "1.1654531178", + "1.2196180853", + "1.1866410086", + "1.1758394077", + "1.1831453223", + "1.1237404837", + "1.1363413146", + "1.1433989276", + "1.1386368953", + "1.1879999368", + "1.193986809", + "1.2033856581", + "1.2154770383", + "1.1506530783", + "1.1924417994", + "1.1905733831", + "1.1169878209", + "1.1151155499", + "1.1433113236", + "1.1364146927", + "1.188233444", + "1.0919093328", + "1.0372386744", + "1.0550524053", + "1.0177970095", + "1.050196737", + "1.1334274978", + "1.146669854", + "1.1615860814", + "1.1768224886", + "1.0905910841", + "1.0229801332", + "1.0833628511", + "1.1560671454", + "1.0019016402", + "1.0307602423", + "1.0368824909", + "1.0936718628", + "1.0470019809", + "1.0535156267", + "1.0582979727", + "1.039546612", + "1.0657931589", + "1.1330708609", + "1.1396250251", + "1.1674105401", + "1.1804135303", + "1.1770338303", + "1.0556707499", + "1.082715057", + "1.0460041015", + "1.05142132", + "1.1034059319", + "1.1357191532", + "1.1276545316", + "1.136069995", + "1.1231646523", + "1.1102715663", + "1.1148180543", + "1.1684433462", + "1.2238291676", + "1.3205864888", + "1.2337109067", + "1.2330806018", + "1.2609063535", + "1.1982939938", + "1.2651401131", + "1.2601861866", + "1.2251610859", + "1.2344245516", + "1.1297106705", + "1.4212677358", + "1.3474224271", + "1.3566114475", + "1.2841210752", + "1.2964119168", + "1.2860268173", + "1.3882304264", + "1.3154620642", + "1.3536496791", + "1.3477325533", + "1.3256170353", + "1.2548442488", + "1.2575890923", + "1.3022476424", + "1.2960084008", + "1.3005972014", + "1.2659956136", + "1.2575765891", + "1.2495397477", + "1.3091888692", + "1.2680175133", + "1.2756862157", + "1.2462070445", + "1.1989539642", + "1.3025166165", + "1.2406007276", + "1.2337340829", + "1.2539623148", + "1.3301065724", + "1.342378131", + "1.3509669942", + "1.3460792256", + "1.3398744992", + "1.3297147044", + "1.3287328156", + "1.3220797337", + "1.4402746112", + "1.4211578863", + "1.2950930062", + "1.3443783492", + "1.3443056673", + "1.3379464389", + "1.3404592094", + "1.4065417095", + "1.4010916871", + "1.3559701477", + "1.3419348041", + "1.339281902", + "1.327785818", + "1.3465192117", + "1.3149955875", + "1.3059514372", + "1.3017898773", + "1.3173505712", + "1.3128208821", + "1.3037189344", + "1.3102888488", + "1.3249641626", + "1.3397147351", + "1.3486491019", + "1.3751137896", + "1.3266443971", + "1.3506561648", + "1.3615811884", + "1.305269543", + "1.3595892821", + "1.3345214298", + "1.3104588407", + "1.3099600699", + "1.317653387", + "1.3116182773", + "1.2847503542", + "1.2926954123", + "1.2958376217", + "1.2671179062" + ] + }, + "essential_compounds": [ + "12dgr180", + "26dap_M", + "2dmmq8", + "3mop", + "4abut", + "4abz", + "C02528", + "Lcyst", + "ac", + "acgam", + "ade", + "adocbl", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "amp", + "arab_L", + "arbt", + "arg_L", + "arsenb", + "asn_L", + "asp_L", + "btn", + "but", + "butso3", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "chol", + "cholate", + "cl", + "co2", + "cobalt2", + "cro4", + "csn", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dgchol", + "dgsn", + "ethso3", + "fe2", + "fe3", + "fol", + "for", + "fru", + "galt", + "galur", + "gam", + "gcald", + "gchola", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glyc", + "glyclt", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gua", + "h2", + "h2o", + "h", + "hexs", + "hg2", + "his_L", + "hxan", + "ile_L", + "ins", + "isetac", + "isobut", + "isocapr", + "isoval", + "k", + "lac_D", + "lac_L", + "leu_L", + "lys_L", + "malt", + "malthx", + "malttr", + "man", + "meoh", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mnl", + "mops", + "mso3", + "na1", + "nac", + "nh4", + "o2", + "orn", + "pb", + "pect", + "phe_L", + "pheme", + "pi", + "ppa", + "pro_L", + "pydam", + "pydx", + "pydxn", + "q8", + "rib_D", + "ribflv", + "salcn", + "sbt_D", + "ser_L", + "sheme", + "so4", + "spmd", + "succ", + "sucr", + "sulfac", + "taur", + "tchola", + "tdchola", + "thm", + "thr_L", + "thymd", + "tre", + "tym", + "tyr_L", + "ura", + "uri", + "val_L", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_452.json b/agents/agora/agent_452.json new file mode 100644 index 0000000000000000000000000000000000000000..a9853cab6b143274dd292c8b48833791d03780a5 --- /dev/null +++ b/agents/agora/agent_452.json @@ -0,0 +1,959 @@ +{ + "id": 452, + "name": "Helicobacter_pylori_26695", + "N_R": 1026, + "taxonomy": { + "k": 452, + "tax_distance": [ + "2.4226968281", + "2.0048189608", + "1.9981197317", + "2.2247024388", + "1.9061023649", + "1.9512310518", + "1.932525754", + "1.9295831597", + "1.993564758", + "1.9119206661", + "1.9289853695", + "2.0371076833", + "2.0101254616", + "2.2381394195", + "2.2864962366", + "2.3168287472", + "2.1971783493", + "2.2061024661", + "2.2415769417", + "1.7745612577", + "1.709890281", + "1.4593690223", + "1.3927185899", + "1.2712389132", + "1.0970596344", + "1.0912484263", + "1.0878938549", + "1.0902549093", + "1.0744886193", + "1.0658028564", + "1.0682537625", + "1.1698396986", + "1.1793775014", + "1.1757435914", + "1.19143966", + "1.15993808", + "1.1826840241", + "1.2009899356", + "1.1819579726", + "1.4748986316", + "1.2197402529", + "1.1383791969", + "1.1451445031", + "1.1477520832", + "1.1445203412", + "1.1474937229", + "1.142595118", + "1.1429801533", + "1.1371652425", + "1.1292040529", + "1.0707818749", + "1.0762942749", + "1.0705534416", + "1.042707171", + "1.0492289151", + "1.0783309123", + "1.0522540255", + "1.0502379979", + "1.0709924035", + "1.0686525088", + "1.0519106813", + "1.0772614529", + "1.0793362427", + "1.0780053495", + "1.092396567", + "1.0941187289", + "1.0941187289", + "1.1007643116", + "1.1007643116", + "1.1007643116", + "1.1007643116", + "1.1007643116", + "1.1007643116", + "1.1007643116", + "1.1007643116", + "1.0966849489", + "1.0970306861", + "1.0905989785", + "1.1010914531", + "1.1001862112", + "1.0962880416", + "1.094545368", + "1.0958639378", + "1.0923620573", + "1.087284309", + "1.0906294346", + "1.0960752014", + "1.0915370097", + "1.0765370536", + "1.0849081685", + "1.0796327833", + "1.0957807243", + "1.0910834351", + "1.0952170044", + "1.0731772938", + "1.06777711", + "1.0818434651", + "1.0925038741", + "1.1093009171", + "1.0917106269", + "1.0817155084", + "1.0803976908", + "1.0611473109", + "1.0740257999", + "1.1328982449", + "1.1277463332", + "1.1946425905", + "1.1608033345", + "1.0979946937", + "1.1017209505", + "1.1044544176", + "1.0973503361", + "1.0973503361", + "1.0787264339", + "1.0816305802", + "1.0735300635", + "1.1090557622", + "1.0458332127", + "1.0237422993", + "1.0416066556", + "1.0283356603", + "1.0287612527", + "1.1470129663", + "1.1542034171", + "1.17564443", + "0.9802407143", + "1.1499896676", + "1.1566649017", + "1.1413018094", + "1.1609358146", + "1.1501229006", + "1.1551893869", + "1.1466931093", + "1.1397430042", + "1.1306133071", + "1.1312714275", + "1.1501853507", + "1.1233039068", + "1.1053396963", + "1.1992276372", + "1.2006015109", + "1.1699130986", + "1.2274927892", + "1.1650713767", + "1.1705653195", + "1.1676042944", + "1.1923112795", + "1.1814888307", + "1.0896457587", + "1.0607356692", + "1.0219246092", + "0.999823316", + "0.9911815097", + "0.9860613186", + "1.0229329443", + "1.0254280702", + "0.9972400013", + "0.9856020474", + "0.9891885564", + "1.0581416672", + "1.0648500493", + "1.0344791027", + "1.1583971759", + "1.1528822805", + "1.1552233317", + "1.1129464055", + "1.109092426", + "1.1469989997", + "1.1388221854", + "1.1075801629", + "1.1091395216", + "1.1271595153", + "1.0838547206", + "1.0730185916", + "1.0741791441", + "1.1076654855", + "1.0958419328", + "1.0772150756", + "1.0962036979", + "1.0775356992", + "1.0913506414", + "1.0855680704", + "1.0844996884", + "1.1050581401", + "1.1008455927", + "1.0837265473", + "1.1179549213", + "1.1027206796", + "1.1078329886", + "1.1072263031", + "1.0716246727", + "1.0676044645", + "1.0521371129", + "1.0704836181", + "1.0674172433", + "1.0417256495", + "1.0247129016", + "1.0194052507", + "1.0241470353", + "1.0232884246", + "1.0560543845", + "1.0550737227", + "1.0791135203", + "1.0570044933", + "1.0174965013", + "1.0206609121", + "1.0457228041", + "1.04201392", + "1.0177633033", + "1.0103059534", + "1.0126592127", + "1.0218367476", + "0.9476026507", + "0.9902057515", + "0.9745019808", + "0.9683402176", + "0.9620599728", + "0.9499573552", + "0.9531276946", + "0.995299784", + "1.4296916152", + "1.5144698143", + "1.4270052392", + "1.4121875271", + "1.3905148943", + "0.9441925532", + "0.9629969592", + "1.0129298243", + "0.9745690723", + "0.9898062753", + "1.1033434129", + "1.05711402", + "1.0787656942", + "1.0374323481", + "0.9507706596", + "0.9631530025", + "0.9696440737", + "1.0300706105", + "1.0212710779", + "1.0193523469", + "1.045354628", + "1.0426621924", + "1.0338941368", + "1.0654147604", + "1.0734982249", + "1.0576869517", + "1.0310687019", + "1.0257231288", + "1.0311338047", + "1.0198406635", + "0.9648097687", + "0.9698945906", + "0.9691393671", + "1.0159509516", + "0.9713806722", + "0.9538324738", + "1.03125728", + "0.9845246402", + "0.9596071777", + "0.9726426689", + "0.9432581553", + "0.9084717971", + "0.9925598329", + "0.9949136193", + "0.999690829", + "1.005036427", + "0.9707354012", + "1.0313911505", + "1.0382272659", + "1.0347382634", + "1.0474033288", + "1.033487286", + "1.0132713798", + "1.0046706111", + "1.0513224793", + "1.070600752", + "1.1212797719", + "0.9642021557", + "0.9333748616", + "1.0263805755", + "1.0253638756", + "1.0125847999", + "0.9695095128", + "1.034332827", + "1.0252760748", + "1.0279283371", + "1.0590676424", + "1.0007265092", + "0.9859928064", + "0.9676176781", + "0.9959333168", + "0.9674403915", + "1.0225863088", + "1.0535797088", + "1.0762125566", + "1.0328963796", + "1.0042425911", + "1.0244894878", + "1.0042430994", + "0.9906291245", + "0.9553740536", + "0.9903236131", + "0.9214131372", + "0.9386785082", + "1.0214872192", + "1.0098525584", + "1.0069541321", + "1.0171084393", + "1.0254713248", + "1.0147939636", + "1.0267345312", + "1.0152010737", + "1.0127395671", + "0.9811504355", + "0.9871453413", + "0.9934033385", + "0.9805577931", + "1.01409643", + "0.9463256417", + "1.004823582", + "1.0019683494", + "0.9922088819", + "0.9914340055", + "1.0175761303", + "0.9941848935", + "0.9638787555", + "0.8785506561", + "0.8903552009", + "0.8913724768", + "0.8353956996", + "0.8475226201", + "0.8442342181", + "0.825560019", + "0.8342419707", + "0.8302011838", + "0.820238034", + "0.8460390606", + "0.8427277239", + "0.8060984456", + "0.8246368783", + "0.7823956193", + "0.7850745581", + "0.7990649734", + "0.8005660831", + "0.787236238", + "0.7767148439", + "0.8034692762", + "0.7893923291", + "0.749386032", + "0.7567495676", + "0.9263171311", + "0.7466506223", + "0.7511949766", + "0.7547987505", + "0.7507461423", + "0.7178641156", + "0.7476727904", + "0.7677320326", + "0.7697247563", + "0.7678071569", + "0.7511240679", + "0.7499641383", + "0.7157277285", + "0.71800353", + "0.8438869235", + "0.8550812796", + "0.7413680553", + "0.7470254671", + "0.7370967755", + "0.7012285949", + "0.7268369918", + "0.7175718773", + "0.7097071295", + "0.7088531991", + "0.716377755", + "0.7103702812", + "0.7294392001", + "0.7233628833", + "0.7350852341", + "0.7298524583", + "0.7166362091", + "0.7047025074", + "0.7143632333", + "0.710209749", + "0.7161120516", + "0.7081637068", + "0.6836031711", + "0.6930161376", + "0.6868477222", + "0.7148789098", + "0.7125739622", + "0.7048548823", + "0.7186860051", + "0.7313781158", + "0.7622970885", + "0.7659209874", + "0.7547078442", + "0.7707582421", + "0.7513081543", + "0.7477314532", + "0.7646485121", + "0.7544495039", + "0.7590082757", + "0.7670612974", + "0.7528464609", + "0.7446712543", + "0.8047622338", + "0.7812244605", + "0.7815414865", + "0.7821849004", + "0.7766923057", + "0.7667976816", + "0.826974758", + "0.7978836251", + "0.7201263911", + "0.7389414105", + "0.7587071687", + "0.734816859", + "0.7165202337", + "0.6979903478", + "0.7142955393", + "0.7216519395", + "0.7040501165", + "0.7595581823", + "0.7657294394", + "0.7694470969", + "0.8047091885", + "0.7587208065", + "0.7843966142", + "0.6693603512", + "0.6522419131", + "0.7552696792", + "0.7662583678", + "0.7003296583", + "0.7016065347", + "0.6597896868", + "0.6762088578", + "0.6069636053", + "0.6307027347", + "0.6181272735", + "0.5959244538", + "0.3592858555", + "0.3655851911", + "0.3455868857", + "0.3581153316", + "0.3566413339", + "0.2885141779", + "0.2983133174", + "0.1854659496", + "0.2208901127", + "0.1957029334", + "0.0", + "0.358425527", + "0.3702241277", + "0.3699175775", + "0.4007334729", + "0.4010911687", + "0.504063052", + "0.7243097312", + "0.7288933724", + "0.7386369484", + "0.7183984925", + "0.6800938123", + "0.7494873091", + "0.7304509856", + "0.7353126738", + "0.6721008274", + "0.7038129408", + "0.7124489995", + "0.7241067537", + "0.7065422142", + "0.6931778986", + "0.657544917", + "0.6566305446", + "0.6630972344", + "0.7389355171", + "0.7190520294", + "0.7944349278", + "0.7484453747", + "0.702787798", + "0.7089928349", + "0.7139331243", + "0.7086244656", + "0.7028228646", + "0.7302631336", + "0.7124066698", + "0.7043571762", + "0.6953442092", + "0.7172816862", + "0.7117798414", + "0.7134137334", + "0.6773636423", + "0.6795201137", + "0.6526459008", + "0.7359095913", + "0.711647815", + "0.6970060014", + "0.6772746555", + "0.8129983462", + "0.8162581545", + "0.8441651358", + "0.7988009568", + "0.8029042728", + "0.8169527523", + "0.8306692181", + "0.8543084393", + "0.7955037476", + "0.7735175797", + "0.8021238122", + "0.7703744676", + "0.7736882929", + "0.7866555397", + "0.7670101748", + "0.774272519", + "0.7599076661", + "0.7558192372", + "0.8375628699", + "0.8297543355", + "0.784073526", + "0.8048404887", + "0.801521218", + "0.8547305775", + "0.7821289318", + "0.7663401549", + "0.7839726818", + "0.7847957975", + "0.7862256597", + "0.8116466297", + "0.8235712791", + "0.8820352993", + "0.8854216935", + "0.868467371", + "0.8536995087", + "0.8344733758", + "0.8036074965", + "1.1648895583", + "1.1893300348", + "1.1531747563", + "1.163825361", + "1.1410698265", + "1.1273182056", + "1.2176665911", + "1.2465107762", + "1.2476286984", + "1.1718978338", + "1.1694299585", + "1.1694966741", + "1.1632867799", + "1.1813739885", + "1.1573911327", + "1.1332433022", + "1.0960401923", + "1.1041831899", + "1.0823646113", + "1.1030962608", + "1.0613806905", + "1.0758682234", + "1.0775206496", + "1.0831364906", + "1.0756436752", + "1.0751782761", + "1.0724391282", + "1.0627415011", + "1.0804487234", + "1.0605950878", + "1.0630422387", + "1.0587824043", + "1.0734408513", + "1.0925409534", + "1.0358388347", + "1.0582396089", + "1.0662772397", + "1.0654193301", + "1.0486759847", + "1.0378981452", + "1.0380293029", + "1.0427219505", + "1.0460387243", + "1.0787593363", + "1.1099614248", + "1.1048894469", + "1.0288311764", + "1.0297224614", + "1.0249741497", + "1.0310233998", + "0.9520550818", + "0.8490117647", + "0.8626442777", + "1.1018713794", + "1.3097220052", + "1.0633625683", + "1.1238778538", + "1.1252698028", + "1.1011331954", + "1.1088116986", + "1.1315320896", + "1.1213336217", + "1.1387427177", + "1.1398967791", + "1.1364594491", + "1.1361204907", + "1.162904963", + "1.1328624453", + "1.1365017238", + "1.1403263053", + "1.1405458391", + "1.1038984747", + "1.1087747899", + "1.12982083", + "1.110273017", + "1.1176137641", + "1.0695251787", + "1.061973273", + "1.092685854", + "1.088861607", + "1.1012106992", + "1.106068335", + "1.1007129807", + "1.1002764105", + "1.0913275393", + "1.1033439595", + "1.0809932182", + "1.0969417368", + "1.1056544759", + "1.101369194", + "1.1095667604", + "1.1248229819", + "1.1202923294", + "1.0613866254", + "1.0991371356", + "1.0896385322", + "1.0517326035", + "1.321907931", + "1.3545445888", + "1.3200211495", + "1.328700003", + "1.3025904592", + "1.1163806193", + "0.9696508474", + "0.9616834221", + "1.0150185332", + "0.9782906185", + "0.9833311096", + "0.9811005115", + "0.9687540908", + "0.9736966919", + "0.9269464074", + "0.9822418835", + "0.9766041322", + "1.0220895551", + "1.0001847333", + "0.9925394971", + "0.9798696231", + "0.8927584878", + "0.8966761039", + "1.0048308291", + "0.9873868328", + "0.9913341453", + "0.9861464943", + "0.9587303615", + "1.0478057265", + "0.9953752926", + "0.9954216675", + "1.0924705374", + "1.1230175002", + "1.0784293139", + "1.0854216853", + "1.0581853405", + "1.0635731387", + "1.0627402608", + "1.0549069452", + "0.9975275633", + "1.1461413156", + "1.2003062831", + "1.1673292064", + "1.1565276055", + "1.1638335201", + "1.1044286815", + "1.1170295124", + "1.1240871254", + "1.1193250931", + "1.1686881346", + "1.1746750068", + "1.1840738559", + "1.1961652361", + "1.1313412761", + "1.1731299972", + "1.1712615809", + "1.0976760187", + "1.0958037477", + "1.1239995214", + "1.1171028905", + "1.1689216418", + "1.0725975306", + "1.0179268722", + "1.0357406031", + "0.9984852073", + "1.0308849348", + "1.1141156956", + "1.1273580518", + "1.1422742792", + "1.1575106864", + "1.0712792819", + "1.003668331", + "1.0640510489", + "1.1367553432", + "0.982589838", + "1.0114484401", + "1.0175706887", + "1.0743600606", + "1.0276901787", + "1.0342038245", + "1.0389861705", + "1.0202348098", + "1.0464813567", + "1.1137590587", + "1.1203132229", + "1.1480987379", + "1.1611017281", + "1.1577220281", + "1.0363589477", + "1.0634032548", + "1.0266922993", + "1.0321095178", + "1.0840941297", + "1.116407351", + "1.1083427294", + "1.1167581928", + "1.1038528501", + "1.0909597641", + "1.0955062521", + "1.149131544", + "1.2045173654", + "1.3012746866", + "1.2143991045", + "1.2137687996", + "1.2415945513", + "1.1789821916", + "1.2458283109", + "1.2408743844", + "1.2058492837", + "1.2151127494", + "1.1103988683", + "1.4019559336", + "1.3281106249", + "1.3372996453", + "1.264809273", + "1.2771001146", + "1.2667150151", + "1.3689186242", + "1.296150262", + "1.3343378769", + "1.3284207511", + "1.3063052331", + "1.2355324466", + "1.2382772901", + "1.2829358402", + "1.2766965986", + "1.2812853992", + "1.2466838114", + "1.2382647869", + "1.2302279455", + "1.289877067", + "1.2487057111", + "1.2563744135", + "1.2268952423", + "1.179642162", + "1.2832048143", + "1.2212889254", + "1.2144222807", + "1.2346505126", + "1.3107947702", + "1.3230663288", + "1.331655192", + "1.3267674234", + "1.320562697", + "1.3104029022", + "1.3094210134", + "1.3027679315", + "1.420962809", + "1.4018460841", + "1.275781204", + "1.325066547", + "1.3249938651", + "1.3186346367", + "1.3211474072", + "1.3872299073", + "1.3817798849", + "1.3366583455", + "1.3226230019", + "1.3199700998", + "1.3084740158", + "1.3272074095", + "1.2956837853", + "1.286639635", + "1.2824780751", + "1.298038769", + "1.2935090799", + "1.2844071322", + "1.2909770466", + "1.3056523604", + "1.3204029329", + "1.3293372997", + "1.3558019874", + "1.3073325949", + "1.3313443626", + "1.3422693862", + "1.2859577408", + "1.3402774799", + "1.3152096276", + "1.2911470385", + "1.2906482677", + "1.2983415848", + "1.2923064751", + "1.265438552", + "1.2733836101", + "1.2765258195", + "1.247806104" + ] + }, + "essential_compounds": [ + "12dgr180", + "4hbz", + "Lcyst", + "ac", + "acac", + "acgam", + "adocbl", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_L", + "arabttr", + "arbt", + "arg_L", + "arsenb", + "asn_L", + "asp_L", + "bhb", + "btn", + "but", + "butso3", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cgly", + "cl", + "co2", + "cobalt2", + "csn", + "ctbt", + "cu2", + "cys_L", + "dextrin", + "ethso3", + "fe2", + "fe3", + "fol", + "for", + "fru", + "fum", + "gal", + "galt", + "gam", + "gbbtn", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "h2", + "h2o", + "h2s", + "h", + "hdca", + "hexs", + "hg2", + "his_L", + "hxan", + "ile_L", + "ind3ac", + "isetac", + "k", + "lac_L", + "leu_L", + "lys_L", + "malt", + "malthx", + "malttr", + "man", + "mantr", + "met_L", + "metala", + "mg2", + "mn2", + "mnl", + "mobd", + "mops", + "mqn7", + "mso3", + "n2", + "na1", + "nac", + "nh4", + "o2", + "ocdca", + "pb", + "phe_L", + "pheme", + "pi", + "pnto_R", + "pro_L", + "ptrc", + "ribflv", + "salcn", + "sbt_D", + "ser_L", + "so4", + "spmd", + "stys", + "succ", + "sucr", + "sulfac", + "taur", + "thm", + "thr_L", + "tre", + "ttdca", + "tyr_L", + "ura", + "val_L", + "xan", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_453.json b/agents/agora/agent_453.json new file mode 100644 index 0000000000000000000000000000000000000000..c2de6141be308f9d584cd13424e51706afe880d7 --- /dev/null +++ b/agents/agora/agent_453.json @@ -0,0 +1,972 @@ +{ + "id": 453, + "name": "Helicobacter_winghamensis_ATCC_BAA_430", + "N_R": 1547, + "taxonomy": { + "k": 453, + "tax_distance": [ + "2.3715507529", + "1.9536728856", + "1.9469736565", + "2.1735563636", + "1.8549562897", + "1.9000849766", + "1.8813796788", + "1.8784370845", + "1.9424186828", + "1.8607745909", + "1.8778392943", + "1.9859616081", + "1.9589793864", + "2.1869933443", + "2.2353501614", + "2.265682672", + "2.1460322741", + "2.1549563909", + "2.1904308665", + "1.7234151825", + "1.6587442058", + "1.4082229471", + "1.3415725147", + "1.220092838", + "1.0459135592", + "1.0401023511", + "1.0367477797", + "1.0391088341", + "1.0233425441", + "1.0146567812", + "1.0171076873", + "1.1186936234", + "1.1282314262", + "1.1245975162", + "1.1402935848", + "1.1087920048", + "1.1315379489", + "1.1498438604", + "1.1308118974", + "1.4237525564", + "1.1685941777", + "1.0872331217", + "1.0939984279", + "1.096606008", + "1.093374266", + "1.0963476477", + "1.0914490428", + "1.0918340781", + "1.0860191673", + "1.0780579777", + "1.0196357997", + "1.0251481997", + "1.0194073664", + "0.9915610958", + "0.9980828399", + "1.0271848371", + "1.0011079503", + "0.9990919227", + "1.0198463283", + "1.0175064336", + "1.0007646061", + "1.0261153777", + "1.0281901675", + "1.0268592743", + "1.0412504918", + "1.0429726537", + "1.0429726537", + "1.0496182364", + "1.0496182364", + "1.0496182364", + "1.0496182364", + "1.0496182364", + "1.0496182364", + "1.0496182364", + "1.0496182364", + "1.0455388737", + "1.0458846109", + "1.0394529033", + "1.0499453779", + "1.049040136", + "1.0451419664", + "1.0433992928", + "1.0447178626", + "1.0412159821", + "1.0361382338", + "1.0394833594", + "1.0449291262", + "1.0403909345", + "1.0253909784", + "1.0337620933", + "1.0284867081", + "1.0446346491", + "1.0399373599", + "1.0440709292", + "1.0220312186", + "1.0166310348", + "1.0306973899", + "1.0413577989", + "1.0581548419", + "1.0405645517", + "1.0305694332", + "1.0292516156", + "1.0100012357", + "1.0228797247", + "1.0817521697", + "1.076600258", + "1.1434965153", + "1.1096572593", + "1.0468486185", + "1.0505748753", + "1.0533083424", + "1.0462042609", + "1.0462042609", + "1.0275803587", + "1.030484505", + "1.0223839883", + "1.057909687", + "0.9946871375", + "0.9725962241", + "0.9904605804", + "0.9771895851", + "0.9776151775", + "1.0958668911", + "1.1030573419", + "1.1244983548", + "0.9290946391", + "1.0988435924", + "1.1055188265", + "1.0901557342", + "1.1097897394", + "1.0989768254", + "1.1040433117", + "1.0955470341", + "1.088596929", + "1.0794672319", + "1.0801253523", + "1.0990392755", + "1.0721578316", + "1.0541936211", + "1.148081562", + "1.1494554357", + "1.1187670234", + "1.176346714", + "1.1139253015", + "1.1194192443", + "1.1164582192", + "1.1411652043", + "1.1303427555", + "1.0384996835", + "1.009589594", + "0.970778534", + "0.9486772408", + "0.9400354345", + "0.9349152434", + "0.9717868691", + "0.974281995", + "0.9460939261", + "0.9344559722", + "0.9380424812", + "1.006995592", + "1.0137039741", + "0.9833330275", + "1.1072511007", + "1.1017362053", + "1.1040772565", + "1.0618003303", + "1.0579463508", + "1.0958529245", + "1.0876761102", + "1.0564340877", + "1.0579934464", + "1.0760134401", + "1.0327086454", + "1.0218725164", + "1.0230330689", + "1.0565194103", + "1.0446958576", + "1.0260690004", + "1.0450576227", + "1.026389624", + "1.0402045662", + "1.0344219952", + "1.0333536132", + "1.0539120649", + "1.0496995175", + "1.0325804721", + "1.0668088461", + "1.0515746044", + "1.0566869134", + "1.0560802279", + "1.0204785975", + "1.0164583893", + "1.0009910377", + "1.0193375429", + "1.0162711681", + "0.9905795743", + "0.9735668264", + "0.9682591755", + "0.9730009601", + "0.9721423494", + "1.0049083093", + "1.0039276475", + "1.0279674451", + "1.0058584181", + "0.9663504261", + "0.9695148369", + "0.9945767289", + "0.9908678448", + "0.9666172281", + "0.9591598782", + "0.9615131375", + "0.9706906724", + "0.8964565755", + "0.9390596763", + "0.9233559056", + "0.9171941424", + "0.9109138976", + "0.89881128", + "0.9019816194", + "0.9441537088", + "1.37854554", + "1.4633237391", + "1.375859164", + "1.3610414519", + "1.3393688191", + "0.893046478", + "0.911850884", + "0.9617837491", + "0.9234229971", + "0.9386602001", + "1.0521973377", + "1.0059679448", + "1.027619619", + "0.9862862729", + "0.8996245844", + "0.9120069273", + "0.9184979985", + "0.9789245353", + "0.9701250027", + "0.9682062717", + "0.9942085528", + "0.9915161172", + "0.9827480616", + "1.0142686852", + "1.0223521497", + "1.0065408765", + "0.9799226267", + "0.9745770536", + "0.9799877295", + "0.9686945883", + "0.9136636935", + "0.9187485154", + "0.9179932919", + "0.9648048764", + "0.920234597", + "0.9026863986", + "0.9801112048", + "0.933378565", + "0.9084611025", + "0.9214965937", + "0.8921120801", + "0.8573257219", + "0.9414137577", + "0.9437675441", + "0.9485447538", + "0.9538903518", + "0.919589326", + "0.9802450753", + "0.9870811907", + "0.9835921882", + "0.9962572536", + "0.9823412108", + "0.9621253046", + "0.9535245359", + "1.0001764041", + "1.0194546768", + "1.0701336967", + "0.9130560805", + "0.8822287864", + "0.9752345003", + "0.9742178004", + "0.9614387247", + "0.9183634376", + "0.9831867518", + "0.9741299996", + "0.9767822619", + "1.0079215672", + "0.949580434", + "0.9348467312", + "0.9164716029", + "0.9447872416", + "0.9162943163", + "0.9714402336", + "1.0024336336", + "1.0250664814", + "0.9817503044", + "0.9530965159", + "0.9733434126", + "0.9530970242", + "0.9394830493", + "0.9042279784", + "0.9391775379", + "0.870267062", + "0.887532433", + "0.970341144", + "0.9587064832", + "0.9558080569", + "0.9659623641", + "0.9743252496", + "0.9636478884", + "0.975588456", + "0.9640549985", + "0.9615934919", + "0.9300043603", + "0.9359992661", + "0.9422572633", + "0.9294117179", + "0.9629503548", + "0.8951795665", + "0.9536775068", + "0.9508222742", + "0.9410628067", + "0.9402879303", + "0.9664300551", + "0.9430388183", + "0.9127326803", + "0.8274045809", + "0.8392091257", + "0.8402264016", + "0.7842496244", + "0.7963765449", + "0.7930881429", + "0.7744139438", + "0.7830958955", + "0.7790551086", + "0.7690919588", + "0.7948929854", + "0.7915816487", + "0.7549523704", + "0.7734908031", + "0.7312495441", + "0.7339284829", + "0.7479188982", + "0.7494200079", + "0.7360901628", + "0.7255687687", + "0.752323201", + "0.7382462539", + "0.6982399568", + "0.7056034924", + "0.8751710559", + "0.6955045471", + "0.7000489014", + "0.7036526753", + "0.6996000671", + "0.6667180404", + "0.6965267152", + "0.7165859574", + "0.7185786811", + "0.7166610817", + "0.6999779927", + "0.6988180631", + "0.6645816533", + "0.6668574548", + "0.7927408483", + "0.8039352044", + "0.6902219801", + "0.6958793919", + "0.6859507003", + "0.6500825197", + "0.6756909166", + "0.6664258021", + "0.6585610543", + "0.6577071239", + "0.6652316798", + "0.659224206", + "0.6782931249", + "0.6722168081", + "0.6839391589", + "0.6787063831", + "0.6654901339", + "0.6535564322", + "0.6632171581", + "0.6590636738", + "0.6649659764", + "0.6570176316", + "0.6324570959", + "0.6418700624", + "0.635701647", + "0.6637328346", + "0.661427887", + "0.6537088071", + "0.6675399299", + "0.6802320406", + "0.7111510133", + "0.7147749122", + "0.703561769", + "0.7196121669", + "0.7001620791", + "0.696585378", + "0.7135024369", + "0.7033034287", + "0.7078622005", + "0.7159152222", + "0.7017003857", + "0.6935251791", + "0.7536161586", + "0.7300783853", + "0.7303954113", + "0.7310388252", + "0.7255462305", + "0.7156516064", + "0.7758286828", + "0.7467375499", + "0.6689803159", + "0.6877953353", + "0.7075610935", + "0.6836707838", + "0.6653741585", + "0.6468442726", + "0.6631494641", + "0.6705058643", + "0.6529040413", + "0.7084121071", + "0.7145833642", + "0.7183010217", + "0.7535631133", + "0.7075747313", + "0.733250539", + "0.618214276", + "0.6010958379", + "0.704123604", + "0.7151122926", + "0.6491835831", + "0.6504604595", + "0.6086436116", + "0.6250627826", + "0.5558175301", + "0.5795566595", + "0.5669811983", + "0.5447783786", + "0.3430153873", + "0.3493147229", + "0.3293164175", + "0.3418448634", + "0.3403708657", + "0.3087726559", + "0.3185717954", + "0.3675003454", + "0.4029245085", + "0.3777373292", + "0.358425527", + "0.0", + "0.1949991313", + "0.1946925811", + "0.2678521831", + "0.2682098789", + "0.4529169768", + "0.673163656", + "0.6777472972", + "0.6874908732", + "0.6672524173", + "0.6289477371", + "0.6983412339", + "0.6793049104", + "0.6841665986", + "0.6209547522", + "0.6526668656", + "0.6613029243", + "0.6729606785", + "0.655396139", + "0.6420318234", + "0.6063988418", + "0.6054844694", + "0.6119511592", + "0.6877894419", + "0.6679059542", + "0.7432888526", + "0.6972992995", + "0.6516417228", + "0.6578467597", + "0.6627870491", + "0.6574783904", + "0.6516767894", + "0.6791170584", + "0.6612605946", + "0.653211101", + "0.644198134", + "0.666135611", + "0.6606337662", + "0.6622676582", + "0.6262175671", + "0.6283740385", + "0.6014998256", + "0.6847635161", + "0.6605017398", + "0.6458599262", + "0.6261285803", + "0.761852271", + "0.7651120793", + "0.7930190606", + "0.7476548816", + "0.7517581976", + "0.7658066771", + "0.7795231429", + "0.8031623641", + "0.7443576724", + "0.7223715045", + "0.750977737", + "0.7192283924", + "0.7225422177", + "0.7355094645", + "0.7158640996", + "0.7231264438", + "0.7087615909", + "0.704673162", + "0.7864167947", + "0.7786082603", + "0.7329274508", + "0.7536944135", + "0.7503751428", + "0.8035845023", + "0.7309828566", + "0.7151940797", + "0.7328266066", + "0.7336497223", + "0.7350795845", + "0.7605005545", + "0.7724252039", + "0.8308892241", + "0.8342756183", + "0.8173212958", + "0.8025534335", + "0.7833273006", + "0.7524614213", + "1.1137434831", + "1.1381839596", + "1.1020286811", + "1.1126792858", + "1.0899237513", + "1.0761721304", + "1.1665205159", + "1.195364701", + "1.1964826232", + "1.1207517586", + "1.1182838833", + "1.1183505989", + "1.1121407047", + "1.1302279133", + "1.1062450575", + "1.082097227", + "1.0448941171", + "1.0530371147", + "1.0312185361", + "1.0519501856", + "1.0102346153", + "1.0247221482", + "1.0263745744", + "1.0319904154", + "1.0244976", + "1.0240322009", + "1.021293053", + "1.0115954259", + "1.0293026482", + "1.0094490126", + "1.0118961635", + "1.0076363291", + "1.0222947761", + "1.0413948782", + "0.9846927595", + "1.0070935337", + "1.0151311645", + "1.0142732549", + "0.9975299095", + "0.98675207", + "0.9868832277", + "0.9915758753", + "0.9948926491", + "1.0276132611", + "1.0588153496", + "1.0537433717", + "0.9776851012", + "0.9785763862", + "0.9738280745", + "0.9798773246", + "0.9009090066", + "0.7978656895", + "0.8114982025", + "1.0507253042", + "1.25857593", + "1.0122164931", + "1.0727317786", + "1.0741237276", + "1.0499871202", + "1.0576656234", + "1.0803860144", + "1.0701875465", + "1.0875966425", + "1.0887507039", + "1.0853133739", + "1.0849744155", + "1.1117588878", + "1.0817163701", + "1.0853556486", + "1.0891802301", + "1.0893997639", + "1.0527523995", + "1.0576287147", + "1.0786747548", + "1.0591269418", + "1.0664676889", + "1.0183791035", + "1.0108271978", + "1.0415397788", + "1.0377155318", + "1.050064624", + "1.0549222598", + "1.0495669055", + "1.0491303353", + "1.0401814641", + "1.0521978843", + "1.029847143", + "1.0457956616", + "1.0545084007", + "1.0502231188", + "1.0584206852", + "1.0736769067", + "1.0691462542", + "1.0102405502", + "1.0479910604", + "1.038492457", + "1.0005865283", + "1.2707618558", + "1.3033985136", + "1.2688750743", + "1.2775539278", + "1.251444384", + "1.0652345441", + "0.9185047722", + "0.9105373469", + "0.963872458", + "0.9271445433", + "0.9321850344", + "0.9299544363", + "0.9176080156", + "0.9225506167", + "0.8758003322", + "0.9310958083", + "0.925458057", + "0.9709434799", + "0.9490386581", + "0.9413934219", + "0.9287235479", + "0.8416124126", + "0.8455300287", + "0.9536847539", + "0.9362407576", + "0.9401880701", + "0.9350004191", + "0.9075842863", + "0.9966596513", + "0.9442292174", + "0.9442755923", + "1.0413244622", + "1.071871425", + "1.0272832387", + "1.0342756101", + "1.0070392653", + "1.0124270635", + "1.0115941856", + "1.00376087", + "0.9463814881", + "1.0949952404", + "1.1491602079", + "1.1161831312", + "1.1053815303", + "1.1126874449", + "1.0532826063", + "1.0658834372", + "1.0729410502", + "1.0681790179", + "1.1175420594", + "1.1235289316", + "1.1329277807", + "1.1450191609", + "1.0801952009", + "1.121983922", + "1.1201155057", + "1.0465299435", + "1.0446576725", + "1.0728534462", + "1.0659568153", + "1.1177755666", + "1.0214514554", + "0.966780797", + "0.9845945279", + "0.9473391321", + "0.9797388596", + "1.0629696204", + "1.0762119766", + "1.091128204", + "1.1063646112", + "1.0201332067", + "0.9525222558", + "1.0129049737", + "1.085609268", + "0.9314437628", + "0.9603023649", + "0.9664246135", + "1.0232139854", + "0.9765441035", + "0.9830577493", + "0.9878400953", + "0.9690887346", + "0.9953352815", + "1.0626129835", + "1.0691671477", + "1.0969526627", + "1.1099556529", + "1.1065759529", + "0.9852128725", + "1.0122571796", + "0.9755462241", + "0.9809634426", + "1.0329480545", + "1.0652612758", + "1.0571966542", + "1.0656121176", + "1.0527067749", + "1.0398136889", + "1.0443601769", + "1.0979854688", + "1.1533712902", + "1.2501286114", + "1.1632530293", + "1.1626227244", + "1.1904484761", + "1.1278361164", + "1.1946822357", + "1.1897283092", + "1.1547032085", + "1.1639666742", + "1.0592527931", + "1.3508098584", + "1.2769645497", + "1.2861535701", + "1.2136631978", + "1.2259540394", + "1.2155689399", + "1.317772549", + "1.2450041868", + "1.2831918017", + "1.2772746759", + "1.2551591579", + "1.1843863714", + "1.1871312149", + "1.231789765", + "1.2255505234", + "1.230139324", + "1.1955377362", + "1.1871187117", + "1.1790818703", + "1.2387309918", + "1.1975596359", + "1.2052283383", + "1.1757491671", + "1.1284960868", + "1.2320587391", + "1.1701428502", + "1.1632762055", + "1.1835044374", + "1.259648695", + "1.2719202536", + "1.2805091168", + "1.2756213482", + "1.2694166218", + "1.259256827", + "1.2582749382", + "1.2516218563", + "1.3698167338", + "1.3507000089", + "1.2246351288", + "1.2739204718", + "1.2738477899", + "1.2674885615", + "1.270001332", + "1.3360838321", + "1.3306338097", + "1.2855122703", + "1.2714769267", + "1.2688240246", + "1.2573279406", + "1.2760613343", + "1.2445377101", + "1.2354935598", + "1.2313319999", + "1.2468926938", + "1.2423630047", + "1.233261057", + "1.2398309714", + "1.2545062852", + "1.2692568577", + "1.2781912245", + "1.3046559122", + "1.2561865197", + "1.2801982874", + "1.291123311", + "1.2348116656", + "1.2891314047", + "1.2640635524", + "1.2400009633", + "1.2395021925", + "1.2471955096", + "1.2411603999", + "1.2142924768", + "1.2222375349", + "1.2253797443", + "1.1966600288" + ] + }, + "essential_compounds": [ + "12dgr180", + "4abut", + "C02528", + "Lcystin", + "Tyr_ggn", + "ac", + "acald", + "acgam", + "adocbl", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "amylopect900", + "amylose300", + "arab_L", + "arabinoxyl", + "arabttr", + "arbt", + "arsenb", + "asn_L", + "asp_L", + "btn", + "but", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "cholate", + "cl", + "co2", + "cobalt2", + "cro4", + "cu2", + "cys_L", + "dextrin", + "dgchol", + "etoh", + "fe2", + "fe3", + "fol", + "for", + "fru", + "fum", + "gal", + "galt", + "galur", + "gam", + "gchola", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc3p", + "glycys", + "glygln", + "glyglu", + "glygn2", + "glygn4", + "glygn5", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gthox", + "gthrd", + "h2", + "h2o", + "h", + "hdca", + "hg2", + "his_L", + "hxan", + "ind3ac", + "inulin", + "k", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "malt", + "malthx", + "malttr", + "man", + "mantr", + "melib", + "meoh", + "met_L", + "metala", + "mg2", + "mn2", + "mnl", + "mqn7", + "na1", + "nac", + "nh4", + "o2", + "ocdca", + "pb", + "pect", + "phe_L", + "pi", + "pro_L", + "ptrc", + "pullulan1200", + "pydam", + "pydx", + "pydxn", + "raffin", + "rbflvrd", + "ribflv", + "salcn", + "sbt_D", + "so4", + "spmd", + "strch1", + "strch2", + "stys", + "succ", + "sucr", + "taur", + "tchola", + "tdchola", + "thr_L", + "tre", + "tsul", + "ttdca", + "tyr_L", + "ura", + "xyl_D", + "xylan", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_454.json b/agents/agora/agent_454.json new file mode 100644 index 0000000000000000000000000000000000000000..0072835c5d51a3d8fd75c0dbe5afb7f6cc19af1e --- /dev/null +++ b/agents/agora/agent_454.json @@ -0,0 +1,952 @@ +{ + "id": 454, + "name": "Holdemania_filiformis_VPI_J1_31B_1_DSM_12042", + "N_R": 1081, + "taxonomy": { + "k": 454, + "tax_distance": [ + "2.3833493536", + "1.9654714863", + "1.9587722572", + "2.1853549643", + "1.8667548904", + "1.9118835773", + "1.8931782795", + "1.8902356852", + "1.9542172835", + "1.8725731916", + "1.889637895", + "1.9977602088", + "1.9707779871", + "2.198791945", + "2.2471487621", + "2.2774812727", + "2.1578308748", + "2.1667549916", + "2.2022294672", + "1.7352137832", + "1.6705428065", + "1.4200215478", + "1.3533711154", + "1.2318914387", + "1.0577121599", + "1.0519009518", + "1.0485463804", + "1.0509074348", + "1.0351411448", + "1.0264553819", + "1.028906288", + "1.1304922241", + "1.1400300269", + "1.1363961169", + "1.1520921855", + "1.1205906055", + "1.1433365496", + "1.1616424611", + "1.1426104981", + "1.4355511571", + "1.1803927784", + "1.0990317224", + "1.1057970286", + "1.1084046087", + "1.1051728667", + "1.1081462484", + "1.1032476435", + "1.1036326788", + "1.097817768", + "1.0898565784", + "1.0314344004", + "1.0369468004", + "1.0312059671", + "1.0033596965", + "1.0098814406", + "1.0389834378", + "1.012906551", + "1.0108905234", + "1.031644929", + "1.0293050343", + "1.0125632068", + "1.0379139784", + "1.0399887682", + "1.038657875", + "1.0530490925", + "1.0547712544", + "1.0547712544", + "1.0614168371", + "1.0614168371", + "1.0614168371", + "1.0614168371", + "1.0614168371", + "1.0614168371", + "1.0614168371", + "1.0614168371", + "1.0573374744", + "1.0576832116", + "1.051251504", + "1.0617439786", + "1.0608387367", + "1.0569405671", + "1.0551978935", + "1.0565164633", + "1.0530145828", + "1.0479368345", + "1.0512819601", + "1.0567277269", + "1.0521895352", + "1.0371895791", + "1.045560694", + "1.0402853088", + "1.0564332498", + "1.0517359606", + "1.0558695299", + "1.0338298193", + "1.0284296355", + "1.0424959906", + "1.0531563996", + "1.0699534426", + "1.0523631524", + "1.0423680339", + "1.0410502163", + "1.0217998364", + "1.0346783254", + "1.0935507704", + "1.0883988587", + "1.155295116", + "1.12145586", + "1.0586472192", + "1.062373476", + "1.0651069431", + "1.0580028616", + "1.0580028616", + "1.0393789594", + "1.0422831057", + "1.034182589", + "1.0697082877", + "1.0064857382", + "0.9843948248", + "1.0022591811", + "0.9889881858", + "0.9894137782", + "1.1076654918", + "1.1148559426", + "1.1362969555", + "0.9408932398", + "1.1106421931", + "1.1173174272", + "1.1019543349", + "1.1215883401", + "1.1107754261", + "1.1158419124", + "1.1073456348", + "1.1003955297", + "1.0912658326", + "1.091923953", + "1.1108378762", + "1.0839564323", + "1.0659922218", + "1.1598801627", + "1.1612540364", + "1.1305656241", + "1.1881453147", + "1.1257239022", + "1.131217845", + "1.1282568199", + "1.152963805", + "1.1421413562", + "1.0502982842", + "1.0213881947", + "0.9825771347", + "0.9604758415", + "0.9518340352", + "0.9467138441", + "0.9835854698", + "0.9860805957", + "0.9578925268", + "0.9462545729", + "0.9498410819", + "1.0187941927", + "1.0255025748", + "0.9951316282", + "1.1190497014", + "1.113534806", + "1.1158758572", + "1.073598931", + "1.0697449515", + "1.1076515252", + "1.0994747109", + "1.0682326884", + "1.0697920471", + "1.0878120408", + "1.0445072461", + "1.0336711171", + "1.0348316696", + "1.068318011", + "1.0564944583", + "1.0378676011", + "1.0568562234", + "1.0381882247", + "1.0520031669", + "1.0462205959", + "1.0451522139", + "1.0657106656", + "1.0614981182", + "1.0443790728", + "1.0786074468", + "1.0633732051", + "1.0684855141", + "1.0678788286", + "1.0322771982", + "1.02825699", + "1.0127896384", + "1.0311361436", + "1.0280697688", + "1.002378175", + "0.9853654271", + "0.9800577762", + "0.9847995608", + "0.9839409501", + "1.01670691", + "1.0157262482", + "1.0397660458", + "1.0176570188", + "0.9781490268", + "0.9813134376", + "1.0063753296", + "1.0026664455", + "0.9784158288", + "0.9709584789", + "0.9733117382", + "0.9824892731", + "0.9082551762", + "0.950858277", + "0.9351545063", + "0.9289927431", + "0.9227124983", + "0.9106098807", + "0.9137802201", + "0.9559523095", + "1.3903441407", + "1.4751223398", + "1.3876577647", + "1.3728400526", + "1.3511674198", + "0.9048450787", + "0.9236494847", + "0.9735823498", + "0.9352215978", + "0.9504588008", + "1.0639959384", + "1.0177665455", + "1.0394182197", + "0.9980848736", + "0.9114231851", + "0.923805528", + "0.9302965992", + "0.990723136", + "0.9819236034", + "0.9800048724", + "1.0060071535", + "1.0033147179", + "0.9945466623", + "1.0260672859", + "1.0341507504", + "1.0183394772", + "0.9917212274", + "0.9863756543", + "0.9917863302", + "0.980493189", + "0.9254622942", + "0.9305471161", + "0.9297918926", + "0.9766034771", + "0.9320331977", + "0.9144849993", + "0.9919098055", + "0.9451771657", + "0.9202597032", + "0.9332951944", + "0.9039106808", + "0.8691243226", + "0.9532123584", + "0.9555661448", + "0.9603433545", + "0.9656889525", + "0.9313879267", + "0.992043676", + "0.9988797914", + "0.9953907889", + "1.0080558543", + "0.9941398115", + "0.9739239053", + "0.9653231366", + "1.0119750048", + "1.0312532775", + "1.0819322974", + "0.9248546812", + "0.8940273871", + "0.987033101", + "0.9860164011", + "0.9732373254", + "0.9301620383", + "0.9949853525", + "0.9859286003", + "0.9885808626", + "1.0197201679", + "0.9613790347", + "0.9466453319", + "0.9282702036", + "0.9565858423", + "0.928092917", + "0.9832388343", + "1.0142322343", + "1.0368650821", + "0.9935489051", + "0.9648951166", + "0.9851420133", + "0.9648956249", + "0.95128165", + "0.9160265791", + "0.9509761386", + "0.8820656627", + "0.8993310337", + "0.9821397447", + "0.9705050839", + "0.9676066576", + "0.9777609648", + "0.9861238503", + "0.9754464891", + "0.9873870567", + "0.9758535992", + "0.9733920926", + "0.941802961", + "0.9477978668", + "0.954055864", + "0.9412103186", + "0.9747489555", + "0.9069781672", + "0.9654761075", + "0.9626208749", + "0.9528614074", + "0.952086531", + "0.9782286558", + "0.954837419", + "0.924531281", + "0.8392031816", + "0.8510077264", + "0.8520250023", + "0.7960482251", + "0.8081751456", + "0.8048867436", + "0.7862125445", + "0.7948944962", + "0.7908537093", + "0.7808905595", + "0.8066915861", + "0.8033802494", + "0.7667509711", + "0.7852894038", + "0.7430481448", + "0.7457270836", + "0.7597174989", + "0.7612186086", + "0.7478887635", + "0.7373673694", + "0.7641218017", + "0.7500448546", + "0.7100385575", + "0.7174020931", + "0.8869696566", + "0.7073031478", + "0.7118475021", + "0.715451276", + "0.7113986678", + "0.6785166411", + "0.7083253159", + "0.7283845581", + "0.7303772818", + "0.7284596824", + "0.7117765934", + "0.7106166638", + "0.676380254", + "0.6786560555", + "0.804539449", + "0.8157338051", + "0.7020205808", + "0.7076779926", + "0.697749301", + "0.6618811204", + "0.6874895173", + "0.6782244028", + "0.670359655", + "0.6695057246", + "0.6770302805", + "0.6710228067", + "0.6900917256", + "0.6840154088", + "0.6957377596", + "0.6905049838", + "0.6772887346", + "0.6653550329", + "0.6750157588", + "0.6708622745", + "0.6767645771", + "0.6688162323", + "0.6442556966", + "0.6536686631", + "0.6475002477", + "0.6755314353", + "0.6732264877", + "0.6655074078", + "0.6793385306", + "0.6920306413", + "0.722949614", + "0.7265735129", + "0.7153603697", + "0.7314107676", + "0.7119606798", + "0.7083839787", + "0.7253010376", + "0.7151020294", + "0.7196608012", + "0.7277138229", + "0.7134989864", + "0.7053237798", + "0.7654147593", + "0.741876986", + "0.742194012", + "0.7428374259", + "0.7373448312", + "0.7274502071", + "0.7876272835", + "0.7585361506", + "0.6807789166", + "0.699593936", + "0.7193596942", + "0.6954693845", + "0.6771727592", + "0.6586428733", + "0.6749480648", + "0.682304465", + "0.664702642", + "0.7202107078", + "0.7263819649", + "0.7300996224", + "0.765361714", + "0.719373332", + "0.7450491397", + "0.6300128767", + "0.6128944386", + "0.7159222047", + "0.7269108933", + "0.6609821838", + "0.6622590602", + "0.6204422123", + "0.6368613833", + "0.5676161308", + "0.5913552602", + "0.578779799", + "0.5565769793", + "0.354813988", + "0.3611133236", + "0.3411150182", + "0.3536434641", + "0.3521694664", + "0.3205712566", + "0.3303703961", + "0.3792989461", + "0.4147231092", + "0.3895359299", + "0.3702241277", + "0.1949991313", + "0.0", + "0.100425624", + "0.2796507838", + "0.2800084796", + "0.4647155775", + "0.6849622567", + "0.6895458979", + "0.6992894739", + "0.679051018", + "0.6407463378", + "0.7101398346", + "0.6911035111", + "0.6959651993", + "0.6327533529", + "0.6644654663", + "0.673101525", + "0.6847592792", + "0.6671947397", + "0.6538304241", + "0.6181974425", + "0.6172830701", + "0.6237497599", + "0.6995880426", + "0.6797045549", + "0.7550874533", + "0.7090979002", + "0.6634403235", + "0.6696453604", + "0.6745856498", + "0.6692769911", + "0.6634753901", + "0.6909156591", + "0.6730591953", + "0.6650097017", + "0.6559967347", + "0.6779342117", + "0.6724323669", + "0.6740662589", + "0.6380161678", + "0.6401726392", + "0.6132984263", + "0.6965621168", + "0.6723003405", + "0.6576585269", + "0.637927181", + "0.7736508717", + "0.77691068", + "0.8048176613", + "0.7594534823", + "0.7635567983", + "0.7776052778", + "0.7913217436", + "0.8149609648", + "0.7561562731", + "0.7341701052", + "0.7627763377", + "0.7310269931", + "0.7343408184", + "0.7473080652", + "0.7276627003", + "0.7349250445", + "0.7205601916", + "0.7164717627", + "0.7982153954", + "0.790406861", + "0.7447260515", + "0.7654930142", + "0.7621737435", + "0.815383103", + "0.7427814573", + "0.7269926804", + "0.7446252073", + "0.745448323", + "0.7468781852", + "0.7722991552", + "0.7842238046", + "0.8426878248", + "0.846074219", + "0.8291198965", + "0.8143520342", + "0.7951259013", + "0.764260022", + "1.1255420838", + "1.1499825603", + "1.1138272818", + "1.1244778865", + "1.101722352", + "1.0879707311", + "1.1783191166", + "1.2071633017", + "1.2082812239", + "1.1325503593", + "1.130082484", + "1.1301491996", + "1.1239393054", + "1.142026514", + "1.1180436582", + "1.0938958277", + "1.0566927178", + "1.0648357154", + "1.0430171368", + "1.0637487863", + "1.022033216", + "1.0365207489", + "1.0381731751", + "1.0437890161", + "1.0362962007", + "1.0358308016", + "1.0330916537", + "1.0233940266", + "1.0411012489", + "1.0212476133", + "1.0236947642", + "1.0194349298", + "1.0340933768", + "1.0531934789", + "0.9964913602", + "1.0188921344", + "1.0269297652", + "1.0260718556", + "1.0093285102", + "0.9985506707", + "0.9986818284", + "1.003374476", + "1.0066912498", + "1.0394118618", + "1.0706139503", + "1.0655419724", + "0.9894837019", + "0.9903749869", + "0.9856266752", + "0.9916759253", + "0.9127076073", + "0.8096642902", + "0.8232968032", + "1.0625239049", + "1.2703745307", + "1.0240150938", + "1.0845303793", + "1.0859223283", + "1.0617857209", + "1.0694642241", + "1.0921846151", + "1.0819861472", + "1.0993952432", + "1.1005493046", + "1.0971119746", + "1.0967730162", + "1.1235574885", + "1.0935149708", + "1.0971542493", + "1.1009788308", + "1.1011983646", + "1.0645510002", + "1.0694273154", + "1.0904733555", + "1.0709255425", + "1.0782662896", + "1.0301777042", + "1.0226257985", + "1.0533383795", + "1.0495141325", + "1.0618632247", + "1.0667208605", + "1.0613655062", + "1.060928936", + "1.0519800648", + "1.063996485", + "1.0416457437", + "1.0575942623", + "1.0663070014", + "1.0620217195", + "1.0702192859", + "1.0854755074", + "1.0809448549", + "1.0220391509", + "1.0597896611", + "1.0502910577", + "1.012385129", + "1.2825604565", + "1.3151971143", + "1.280673675", + "1.2893525285", + "1.2632429847", + "1.0770331448", + "0.9303033729", + "0.9223359476", + "0.9756710587", + "0.938943144", + "0.9439836351", + "0.941753037", + "0.9294066163", + "0.9343492174", + "0.8875989329", + "0.942894409", + "0.9372566577", + "0.9827420806", + "0.9608372588", + "0.9531920226", + "0.9405221486", + "0.8534110133", + "0.8573286294", + "0.9654833546", + "0.9480393583", + "0.9519866708", + "0.9467990198", + "0.919382887", + "1.008458252", + "0.9560278181", + "0.956074193", + "1.0531230629", + "1.0836700257", + "1.0390818394", + "1.0460742108", + "1.018837866", + "1.0242256642", + "1.0233927863", + "1.0155594707", + "0.9581800888", + "1.1067938411", + "1.1609588086", + "1.1279817319", + "1.117180131", + "1.1244860456", + "1.065081207", + "1.0776820379", + "1.0847396509", + "1.0799776186", + "1.1293406601", + "1.1353275323", + "1.1447263814", + "1.1568177616", + "1.0919938016", + "1.1337825227", + "1.1319141064", + "1.0583285442", + "1.0564562732", + "1.0846520469", + "1.077755416", + "1.1295741673", + "1.0332500561", + "0.9785793977", + "0.9963931286", + "0.9591377328", + "0.9915374603", + "1.0747682211", + "1.0880105773", + "1.1029268047", + "1.1181632119", + "1.0319318074", + "0.9643208565", + "1.0247035744", + "1.0974078687", + "0.9432423635", + "0.9721009656", + "0.9782232142", + "1.0350125861", + "0.9883427042", + "0.99485635", + "0.999638696", + "0.9808873353", + "1.0071338822", + "1.0744115842", + "1.0809657484", + "1.1087512634", + "1.1217542536", + "1.1183745536", + "0.9970114732", + "1.0240557803", + "0.9873448248", + "0.9927620433", + "1.0447466552", + "1.0770598765", + "1.0689952549", + "1.0774107183", + "1.0645053756", + "1.0516122896", + "1.0561587776", + "1.1097840695", + "1.1651698909", + "1.2619272121", + "1.17505163", + "1.1744213251", + "1.2022470768", + "1.1396347171", + "1.2064808364", + "1.2015269099", + "1.1665018092", + "1.1757652749", + "1.0710513938", + "1.3626084591", + "1.2887631504", + "1.2979521708", + "1.2254617985", + "1.2377526401", + "1.2273675406", + "1.3295711497", + "1.2568027875", + "1.2949904024", + "1.2890732766", + "1.2669577586", + "1.1961849721", + "1.1989298156", + "1.2435883657", + "1.2373491241", + "1.2419379247", + "1.2073363369", + "1.1989173124", + "1.190880471", + "1.2505295925", + "1.2093582366", + "1.217026939", + "1.1875477678", + "1.1402946875", + "1.2438573398", + "1.1819414509", + "1.1750748062", + "1.1953030381", + "1.2714472957", + "1.2837188543", + "1.2923077175", + "1.2874199489", + "1.2812152225", + "1.2710554277", + "1.2700735389", + "1.263420457", + "1.3816153345", + "1.3624986096", + "1.2364337295", + "1.2857190725", + "1.2856463906", + "1.2792871622", + "1.2817999327", + "1.3478824328", + "1.3424324104", + "1.297310871", + "1.2832755274", + "1.2806226253", + "1.2691265413", + "1.287859935", + "1.2563363108", + "1.2472921605", + "1.2431306006", + "1.2586912945", + "1.2541616054", + "1.2450596577", + "1.2516295721", + "1.2663048859", + "1.2810554584", + "1.2899898252", + "1.3164545129", + "1.2679851204", + "1.2919968881", + "1.3029219117", + "1.2466102663", + "1.3009300054", + "1.2758621531", + "1.251799564", + "1.2513007932", + "1.2589941103", + "1.2529590006", + "1.2260910775", + "1.2340361356", + "1.237178345", + "1.2084586295" + ] + }, + "essential_compounds": [ + "26dap_M", + "4abut", + "C02528", + "Lcystin", + "ac", + "acald", + "acgam", + "adocbl", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "amylopect900", + "amylose300", + "arab_L", + "arabttr", + "asn_L", + "asp_L", + "btn", + "but", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cgly", + "cholate", + "cl", + "co2", + "cobalt2", + "cro4", + "cu2", + "cys_L", + "dextrin", + "dgchol", + "drib", + "etoh", + "fe2", + "fe3", + "for", + "fru", + "gal", + "gchola", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyc3p", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gthox", + "gthrd", + "h2", + "h2o", + "h", + "hdca", + "hg2", + "his_L", + "hxan", + "inulin", + "k", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "malt", + "malthx", + "malttr", + "man", + "mantr", + "melib", + "met_L", + "metala", + "mg2", + "mn2", + "na1", + "nac", + "nh4", + "o2", + "ocdca", + "pb", + "phe_L", + "pi", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "raffin", + "rbflvrd", + "rib_D", + "ribflv", + "so4", + "spmd", + "strch1", + "strch2", + "stys", + "succ", + "sucr", + "taur", + "tchola", + "tdchola", + "thr_L", + "tsul", + "ttdca", + "tyr_L", + "ura", + "urea", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_455.json b/agents/agora/agent_455.json new file mode 100644 index 0000000000000000000000000000000000000000..7881e71ed37ceea712824b475f92c387d4522b05 --- /dev/null +++ b/agents/agora/agent_455.json @@ -0,0 +1,928 @@ +{ + "id": 455, + "name": "Kallipyga_massiliensis_ph2", + "N_R": 968, + "taxonomy": { + "k": 455, + "tax_distance": [ + "2.3830428034", + "1.9651649361", + "1.958465707", + "2.1850484141", + "1.8664483402", + "1.9115770271", + "1.8928717293", + "1.889929135", + "1.9539107333", + "1.8722666414", + "1.8893313448", + "1.9974536586", + "1.9704714369", + "2.1984853948", + "2.2468422119", + "2.2771747225", + "2.1575243246", + "2.1664484414", + "2.201922917", + "1.734907233", + "1.6702362563", + "1.4197149976", + "1.3530645652", + "1.2315848885", + "1.0574056097", + "1.0515944016", + "1.0482398302", + "1.0506008846", + "1.0348345946", + "1.0261488317", + "1.0285997378", + "1.1301856739", + "1.1397234767", + "1.1360895667", + "1.1517856353", + "1.1202840553", + "1.1430299994", + "1.1613359109", + "1.1423039479", + "1.4352446069", + "1.1800862282", + "1.0987251722", + "1.1054904784", + "1.1080980585", + "1.1048663165", + "1.1078396982", + "1.1029410933", + "1.1033261286", + "1.0975112178", + "1.0895500282", + "1.0311278502", + "1.0366402502", + "1.0308994169", + "1.0030531463", + "1.0095748904", + "1.0386768876", + "1.0126000008", + "1.0105839732", + "1.0313383788", + "1.0289984841", + "1.0122566566", + "1.0376074282", + "1.039682218", + "1.0383513248", + "1.0527425423", + "1.0544647042", + "1.0544647042", + "1.0611102869", + "1.0611102869", + "1.0611102869", + "1.0611102869", + "1.0611102869", + "1.0611102869", + "1.0611102869", + "1.0611102869", + "1.0570309242", + "1.0573766614", + "1.0509449538", + "1.0614374284", + "1.0605321865", + "1.0566340169", + "1.0548913433", + "1.0562099131", + "1.0527080326", + "1.0476302843", + "1.0509754099", + "1.0564211767", + "1.051882985", + "1.0368830289", + "1.0452541438", + "1.0399787586", + "1.0561266996", + "1.0514294104", + "1.0555629797", + "1.0335232691", + "1.0281230853", + "1.0421894404", + "1.0528498494", + "1.0696468924", + "1.0520566022", + "1.0420614837", + "1.0407436661", + "1.0214932862", + "1.0343717752", + "1.0932442202", + "1.0880923085", + "1.1549885658", + "1.1211493098", + "1.058340669", + "1.0620669258", + "1.0648003929", + "1.0576963114", + "1.0576963114", + "1.0390724092", + "1.0419765555", + "1.0338760388", + "1.0694017375", + "1.006179188", + "0.9840882746", + "1.0019526309", + "0.9886816356", + "0.989107228", + "1.1073589416", + "1.1145493924", + "1.1359904053", + "0.9405866896", + "1.1103356429", + "1.117010877", + "1.1016477847", + "1.1212817899", + "1.1104688759", + "1.1155353622", + "1.1070390846", + "1.1000889795", + "1.0909592824", + "1.0916174028", + "1.110531326", + "1.0836498821", + "1.0656856716", + "1.1595736125", + "1.1609474862", + "1.1302590739", + "1.1878387645", + "1.125417352", + "1.1309112948", + "1.1279502697", + "1.1526572548", + "1.141834806", + "1.049991734", + "1.0210816445", + "0.9822705845", + "0.9601692913", + "0.951527485", + "0.9464072939", + "0.9832789196", + "0.9857740455", + "0.9575859766", + "0.9459480227", + "0.9495345317", + "1.0184876425", + "1.0251960246", + "0.994825078", + "1.1187431512", + "1.1132282558", + "1.115569307", + "1.0732923808", + "1.0694384013", + "1.107344975", + "1.0991681607", + "1.0679261382", + "1.0694854969", + "1.0875054906", + "1.0442006959", + "1.0333645669", + "1.0345251194", + "1.0680114608", + "1.0561879081", + "1.0375610509", + "1.0565496732", + "1.0378816745", + "1.0516966167", + "1.0459140457", + "1.0448456637", + "1.0654041154", + "1.061191568", + "1.0440725226", + "1.0783008966", + "1.0630666549", + "1.0681789639", + "1.0675722784", + "1.031970648", + "1.0279504398", + "1.0124830882", + "1.0308295934", + "1.0277632186", + "1.0020716248", + "0.9850588769", + "0.979751226", + "0.9844930106", + "0.9836343999", + "1.0164003598", + "1.015419698", + "1.0394594956", + "1.0173504686", + "0.9778424766", + "0.9810068874", + "1.0060687794", + "1.0023598953", + "0.9781092786", + "0.9706519287", + "0.973005188", + "0.9821827229", + "0.907948626", + "0.9505517268", + "0.9348479561", + "0.9286861929", + "0.9224059481", + "0.9103033305", + "0.9134736699", + "0.9556457593", + "1.3900375905", + "1.4748157896", + "1.3873512145", + "1.3725335024", + "1.3508608696", + "0.9045385285", + "0.9233429345", + "0.9732757996", + "0.9349150476", + "0.9501522506", + "1.0636893882", + "1.0174599953", + "1.0391116695", + "0.9977783234", + "0.9111166349", + "0.9234989778", + "0.929990049", + "0.9904165858", + "0.9816170532", + "0.9796983222", + "1.0057006033", + "1.0030081677", + "0.9942401121", + "1.0257607357", + "1.0338442002", + "1.018032927", + "0.9914146772", + "0.9860691041", + "0.99147978", + "0.9801866388", + "0.925155744", + "0.9302405659", + "0.9294853424", + "0.9762969269", + "0.9317266475", + "0.9141784491", + "0.9916032553", + "0.9448706155", + "0.919953153", + "0.9329886442", + "0.9036041306", + "0.8688177724", + "0.9529058082", + "0.9552595946", + "0.9600368043", + "0.9653824023", + "0.9310813765", + "0.9917371258", + "0.9985732412", + "0.9950842387", + "1.0077493041", + "0.9938332613", + "0.9736173551", + "0.9650165864", + "1.0116684546", + "1.0309467273", + "1.0816257472", + "0.924548131", + "0.8937208369", + "0.9867265508", + "0.9857098509", + "0.9729307752", + "0.9298554881", + "0.9946788023", + "0.9856220501", + "0.9882743124", + "1.0194136177", + "0.9610724845", + "0.9463387817", + "0.9279636534", + "0.9562792921", + "0.9277863668", + "0.9829322841", + "1.0139256841", + "1.0365585319", + "0.9932423549", + "0.9645885664", + "0.9848354631", + "0.9645890747", + "0.9509750998", + "0.9157200289", + "0.9506695884", + "0.8817591125", + "0.8990244835", + "0.9818331945", + "0.9701985337", + "0.9673001074", + "0.9774544146", + "0.9858173001", + "0.9751399389", + "0.9870805065", + "0.975547049", + "0.9730855424", + "0.9414964108", + "0.9474913166", + "0.9537493138", + "0.9409037684", + "0.9744424053", + "0.906671617", + "0.9651695573", + "0.9623143247", + "0.9525548572", + "0.9517799808", + "0.9779221056", + "0.9545308688", + "0.9242247308", + "0.8388966314", + "0.8507011762", + "0.8517184521", + "0.7957416749", + "0.8078685954", + "0.8045801934", + "0.7859059943", + "0.794587946", + "0.7905471591", + "0.7805840093", + "0.8063850359", + "0.8030736992", + "0.7664444209", + "0.7849828536", + "0.7427415946", + "0.7454205334", + "0.7594109487", + "0.7609120584", + "0.7475822133", + "0.7370608192", + "0.7638152515", + "0.7497383044", + "0.7097320073", + "0.7170955429", + "0.8866631064", + "0.7069965976", + "0.7115409519", + "0.7151447258", + "0.7110921176", + "0.6782100909", + "0.7080187657", + "0.7280780079", + "0.7300707316", + "0.7281531322", + "0.7114700432", + "0.7103101136", + "0.6760737038", + "0.6783495053", + "0.8042328988", + "0.8154272549", + "0.7017140306", + "0.7073714424", + "0.6974427508", + "0.6615745702", + "0.6871829671", + "0.6779178526", + "0.6700531048", + "0.6691991744", + "0.6767237303", + "0.6707162565", + "0.6897851754", + "0.6837088586", + "0.6954312094", + "0.6901984336", + "0.6769821844", + "0.6650484827", + "0.6747092086", + "0.6705557243", + "0.6764580269", + "0.6685096821", + "0.6439491464", + "0.6533621129", + "0.6471936975", + "0.6752248851", + "0.6729199375", + "0.6652008576", + "0.6790319804", + "0.6917240911", + "0.7226430638", + "0.7262669627", + "0.7150538195", + "0.7311042174", + "0.7116541296", + "0.7080774285", + "0.7249944874", + "0.7147954792", + "0.719354251", + "0.7274072727", + "0.7131924362", + "0.7050172296", + "0.7651082091", + "0.7415704358", + "0.7418874618", + "0.7425308757", + "0.737038281", + "0.7271436569", + "0.7873207333", + "0.7582296004", + "0.6804723664", + "0.6992873858", + "0.719053144", + "0.6951628343", + "0.676866209", + "0.6583363231", + "0.6746415146", + "0.6819979148", + "0.6643960918", + "0.7199041576", + "0.7260754147", + "0.7297930722", + "0.7650551638", + "0.7190667818", + "0.7447425895", + "0.6297063265", + "0.6125878884", + "0.7156156545", + "0.7266043431", + "0.6606756336", + "0.66195251", + "0.6201356621", + "0.6365548331", + "0.5673095806", + "0.59104871", + "0.5784732488", + "0.5562704291", + "0.3545074378", + "0.3608067734", + "0.340808468", + "0.3533369139", + "0.3518629162", + "0.3202647064", + "0.3300638459", + "0.3789923959", + "0.414416559", + "0.3892293797", + "0.3699175775", + "0.1946925811", + "0.100425624", + "0.0", + "0.2793442336", + "0.2797019294", + "0.4644090273", + "0.6846557065", + "0.6892393477", + "0.6989829237", + "0.6787444678", + "0.6404397876", + "0.7098332844", + "0.6907969609", + "0.6956586491", + "0.6324468027", + "0.6641589161", + "0.6727949748", + "0.684452729", + "0.6668881895", + "0.6535238739", + "0.6178908923", + "0.6169765199", + "0.6234432097", + "0.6992814924", + "0.6793980047", + "0.7547809031", + "0.70879135", + "0.6631337733", + "0.6693388102", + "0.6742790996", + "0.6689704409", + "0.6631688399", + "0.6906091089", + "0.6727526451", + "0.6647031515", + "0.6556901845", + "0.6776276615", + "0.6721258167", + "0.6737597087", + "0.6377096176", + "0.639866089", + "0.6129918761", + "0.6962555666", + "0.6719937903", + "0.6573519767", + "0.6376206308", + "0.7733443215", + "0.7766041298", + "0.8045111111", + "0.7591469321", + "0.7632502481", + "0.7772987276", + "0.7910151934", + "0.8146544146", + "0.7558497229", + "0.733863555", + "0.7624697875", + "0.7307204429", + "0.7340342682", + "0.747001515", + "0.7273561501", + "0.7346184943", + "0.7202536414", + "0.7161652125", + "0.7979088452", + "0.7901003108", + "0.7444195013", + "0.765186464", + "0.7618671933", + "0.8150765528", + "0.7424749071", + "0.7266861302", + "0.7443186571", + "0.7451417728", + "0.746571635", + "0.771992605", + "0.7839172544", + "0.8423812746", + "0.8457676688", + "0.8288133463", + "0.814045484", + "0.7948193511", + "0.7639534718", + "1.1252355336", + "1.1496760101", + "1.1135207316", + "1.1241713363", + "1.1014158018", + "1.0876641809", + "1.1780125664", + "1.2068567515", + "1.2079746737", + "1.1322438091", + "1.1297759338", + "1.1298426494", + "1.1236327552", + "1.1417199638", + "1.117737108", + "1.0935892775", + "1.0563861676", + "1.0645291652", + "1.0427105866", + "1.0634422361", + "1.0217266658", + "1.0362141987", + "1.0378666249", + "1.0434824659", + "1.0359896505", + "1.0355242514", + "1.0327851035", + "1.0230874764", + "1.0407946987", + "1.0209410631", + "1.023388214", + "1.0191283796", + "1.0337868266", + "1.0528869287", + "0.99618481", + "1.0185855842", + "1.026623215", + "1.0257653054", + "1.00902196", + "0.9982441205", + "0.9983752782", + "1.0030679258", + "1.0063846996", + "1.0391053116", + "1.0703074001", + "1.0652354222", + "0.9891771517", + "0.9900684367", + "0.985320125", + "0.9913693751", + "0.9124010571", + "0.80935774", + "0.822990253", + "1.0622173547", + "1.2700679805", + "1.0237085436", + "1.0842238291", + "1.0856157781", + "1.0614791707", + "1.0691576739", + "1.0918780649", + "1.081679597", + "1.099088693", + "1.1002427544", + "1.0968054244", + "1.096466466", + "1.1232509383", + "1.0932084206", + "1.0968476991", + "1.1006722806", + "1.1008918144", + "1.06424445", + "1.0691207652", + "1.0901668053", + "1.0706189923", + "1.0779597394", + "1.029871154", + "1.0223192483", + "1.0530318293", + "1.0492075823", + "1.0615566745", + "1.0664143103", + "1.061058956", + "1.0606223858", + "1.0516735146", + "1.0636899348", + "1.0413391935", + "1.0572877121", + "1.0660004512", + "1.0617151693", + "1.0699127357", + "1.0851689572", + "1.0806383047", + "1.0217326007", + "1.0594831109", + "1.0499845075", + "1.0120785788", + "1.2822539063", + "1.3148905641", + "1.2803671248", + "1.2890459783", + "1.2629364345", + "1.0767265946", + "0.9299968227", + "0.9220293974", + "0.9753645085", + "0.9386365938", + "0.9436770849", + "0.9414464868", + "0.9291000661", + "0.9340426672", + "0.8872923827", + "0.9425878588", + "0.9369501075", + "0.9824355304", + "0.9605307086", + "0.9528854724", + "0.9402155984", + "0.8531044631", + "0.8570220792", + "0.9651768044", + "0.9477328081", + "0.9516801206", + "0.9464924696", + "0.9190763368", + "1.0081517018", + "0.9557212679", + "0.9557676428", + "1.0528165127", + "1.0833634755", + "1.0387752892", + "1.0457676606", + "1.0185313158", + "1.023919114", + "1.0230862361", + "1.0152529205", + "0.9578735386", + "1.1064872909", + "1.1606522584", + "1.1276751817", + "1.1168735808", + "1.1241794954", + "1.0647746568", + "1.0773754877", + "1.0844331007", + "1.0796710684", + "1.1290341099", + "1.1350209821", + "1.1444198312", + "1.1565112114", + "1.0916872514", + "1.1334759725", + "1.1316075562", + "1.058021994", + "1.056149723", + "1.0843454967", + "1.0774488658", + "1.1292676171", + "1.0329435059", + "0.9782728475", + "0.9960865784", + "0.9588311826", + "0.9912309101", + "1.0744616709", + "1.0877040271", + "1.1026202545", + "1.1178566617", + "1.0316252572", + "0.9640143063", + "1.0243970242", + "1.0971013185", + "0.9429358133", + "0.9717944154", + "0.977916664", + "1.0347060359", + "0.988036154", + "0.9945497998", + "0.9993321458", + "0.9805807851", + "1.006827332", + "1.074105034", + "1.0806591982", + "1.1084447132", + "1.1214477034", + "1.1180680034", + "0.996704923", + "1.0237492301", + "0.9870382746", + "0.9924554931", + "1.044440105", + "1.0767533263", + "1.0686887047", + "1.0771041681", + "1.0641988254", + "1.0513057394", + "1.0558522274", + "1.1094775193", + "1.1648633407", + "1.2616206619", + "1.1747450798", + "1.1741147749", + "1.2019405266", + "1.1393281669", + "1.2061742862", + "1.2012203597", + "1.166195259", + "1.1754587247", + "1.0707448436", + "1.3623019089", + "1.2884566002", + "1.2976456206", + "1.2251552483", + "1.2374460899", + "1.2270609904", + "1.3292645995", + "1.2564962373", + "1.2946838522", + "1.2887667264", + "1.2666512084", + "1.1958784219", + "1.1986232654", + "1.2432818155", + "1.2370425739", + "1.2416313745", + "1.2070297867", + "1.1986107622", + "1.1905739208", + "1.2502230423", + "1.2090516864", + "1.2167203888", + "1.1872412176", + "1.1399881373", + "1.2435507896", + "1.1816349007", + "1.174768256", + "1.1949964879", + "1.2711407455", + "1.2834123041", + "1.2920011673", + "1.2871133987", + "1.2809086723", + "1.2707488775", + "1.2697669887", + "1.2631139068", + "1.3813087843", + "1.3621920594", + "1.2361271793", + "1.2854125223", + "1.2853398404", + "1.278980612", + "1.2814933825", + "1.3475758826", + "1.3421258602", + "1.2970043208", + "1.2829689772", + "1.2803160751", + "1.2688199911", + "1.2875533848", + "1.2560297606", + "1.2469856103", + "1.2428240504", + "1.2583847443", + "1.2538550552", + "1.2447531075", + "1.2513230219", + "1.2659983357", + "1.2807489082", + "1.289683275", + "1.3161479627", + "1.2676785702", + "1.2916903379", + "1.3026153615", + "1.2463037161", + "1.3006234552", + "1.2755556029", + "1.2514930138", + "1.250994243", + "1.2586875601", + "1.2526524504", + "1.2257845273", + "1.2337295854", + "1.2368717948", + "1.2081520793" + ] + }, + "essential_compounds": [ + "26dap_M", + "2dmmq8", + "2obut", + "3mop", + "4abz", + "4hbz", + "ac", + "acald", + "ade", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "amp", + "arg_L", + "asn_L", + "aso3", + "aso4", + "asp_L", + "btn", + "but", + "ca2", + "cd2", + "cgly", + "cl", + "co2", + "cobalt2", + "csn", + "cu2", + "cys_L", + "cytd", + "dcyt", + "dgsn", + "fe2", + "fe3", + "fol", + "for", + "fum", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gua", + "h2o", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "indole", + "k", + "leu_L", + "met_L", + "metala", + "mg2", + "mn2", + "na1", + "nac", + "nh4", + "o2", + "ocdca", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "pnto_R", + "ppa", + "pro_L", + "q8", + "ribflv", + "ser_L", + "sheme", + "so4", + "spmd", + "succ", + "thm", + "thr_L", + "thymd", + "trp_L", + "tyr_L", + "ura", + "val_L", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_456.json b/agents/agora/agent_456.json new file mode 100644 index 0000000000000000000000000000000000000000..072fdc48bc1d9b8fe974884cbd71236cdbd1b39f --- /dev/null +++ b/agents/agora/agent_456.json @@ -0,0 +1,925 @@ +{ + "id": 456, + "name": "Kandleria_vitulina_DSM_20405", + "N_R": 931, + "taxonomy": { + "k": 456, + "tax_distance": [ + "2.4138586988", + "1.9959808315", + "1.9892816024", + "2.2158643095", + "1.8972642356", + "1.9423929225", + "1.9236876247", + "1.9207450304", + "1.9847266287", + "1.9030825368", + "1.9201472402", + "2.028269554", + "2.0012873323", + "2.2293012902", + "2.2776581073", + "2.3079906179", + "2.18834022", + "2.1972643368", + "2.2327388124", + "1.7657231284", + "1.7010521517", + "1.450530893", + "1.3838804606", + "1.2624007839", + "1.0882215051", + "1.082410297", + "1.0790557256", + "1.08141678", + "1.06565049", + "1.0569647271", + "1.0594156332", + "1.1610015693", + "1.1705393721", + "1.1669054621", + "1.1826015307", + "1.1510999507", + "1.1738458948", + "1.1921518063", + "1.1731198433", + "1.4660605023", + "1.2109021236", + "1.1295410676", + "1.1363063738", + "1.1389139539", + "1.1356822119", + "1.1386555936", + "1.1337569887", + "1.134142024", + "1.1283271132", + "1.1203659236", + "1.0619437456", + "1.0674561456", + "1.0617153123", + "1.0338690417", + "1.0403907858", + "1.069492783", + "1.0434158962", + "1.0413998686", + "1.0621542742", + "1.0598143795", + "1.043072552", + "1.0684233236", + "1.0704981134", + "1.0691672202", + "1.0835584377", + "1.0852805996", + "1.0852805996", + "1.0919261823", + "1.0919261823", + "1.0919261823", + "1.0919261823", + "1.0919261823", + "1.0919261823", + "1.0919261823", + "1.0919261823", + "1.0878468196", + "1.0881925568", + "1.0817608492", + "1.0922533238", + "1.0913480819", + "1.0874499123", + "1.0857072387", + "1.0870258085", + "1.083523928", + "1.0784461797", + "1.0817913053", + "1.0872370721", + "1.0826988804", + "1.0676989243", + "1.0760700392", + "1.070794654", + "1.086942595", + "1.0822453058", + "1.0863788751", + "1.0643391645", + "1.0589389807", + "1.0730053358", + "1.0836657448", + "1.1004627878", + "1.0828724976", + "1.0728773791", + "1.0715595615", + "1.0523091816", + "1.0651876706", + "1.1240601156", + "1.1189082039", + "1.1858044612", + "1.1519652052", + "1.0891565644", + "1.0928828212", + "1.0956162883", + "1.0885122068", + "1.0885122068", + "1.0698883046", + "1.0727924509", + "1.0646919342", + "1.1002176329", + "1.0369950834", + "1.01490417", + "1.0327685263", + "1.019497531", + "1.0199231234", + "1.138174837", + "1.1453652878", + "1.1668063007", + "0.971402585", + "1.1411515383", + "1.1478267724", + "1.1324636801", + "1.1520976853", + "1.1412847713", + "1.1463512576", + "1.13785498", + "1.1309048749", + "1.1217751778", + "1.1224332982", + "1.1413472214", + "1.1144657775", + "1.096501567", + "1.1903895079", + "1.1917633816", + "1.1610749693", + "1.2186546599", + "1.1562332474", + "1.1617271902", + "1.1587661651", + "1.1834731502", + "1.1726507014", + "1.0808076294", + "1.0518975399", + "1.0130864799", + "0.9909851867", + "0.9823433804", + "0.9772231893", + "1.014094815", + "1.0165899409", + "0.988401872", + "0.9767639181", + "0.9803504271", + "1.0493035379", + "1.05601192", + "1.0256409734", + "1.1495590466", + "1.1440441512", + "1.1463852024", + "1.1041082762", + "1.1002542967", + "1.1381608704", + "1.1299840561", + "1.0987420336", + "1.1003013923", + "1.118321386", + "1.0750165913", + "1.0641804623", + "1.0653410148", + "1.0988273562", + "1.0870038035", + "1.0683769463", + "1.0873655686", + "1.0686975699", + "1.0825125121", + "1.0767299411", + "1.0756615591", + "1.0962200108", + "1.0920074634", + "1.074888418", + "1.109116792", + "1.0938825503", + "1.0989948593", + "1.0983881738", + "1.0627865434", + "1.0587663352", + "1.0432989836", + "1.0616454888", + "1.058579114", + "1.0328875202", + "1.0158747723", + "1.0105671214", + "1.015308906", + "1.0144502953", + "1.0472162552", + "1.0462355934", + "1.070275391", + "1.048166364", + "1.008658372", + "1.0118227828", + "1.0368846748", + "1.0331757907", + "1.008925174", + "1.0014678241", + "1.0038210834", + "1.0129986183", + "0.9387645214", + "0.9813676222", + "0.9656638515", + "0.9595020883", + "0.9532218435", + "0.9411192259", + "0.9442895653", + "0.9864616547", + "1.4208534859", + "1.505631685", + "1.4181671099", + "1.4033493978", + "1.381676765", + "0.9353544239", + "0.9541588299", + "1.004091695", + "0.965730943", + "0.980968146", + "1.0945052836", + "1.0482758907", + "1.0699275649", + "1.0285942188", + "0.9419325303", + "0.9543148732", + "0.9608059444", + "1.0212324812", + "1.0124329486", + "1.0105142176", + "1.0365164987", + "1.0338240631", + "1.0250560075", + "1.0565766311", + "1.0646600956", + "1.0488488224", + "1.0222305726", + "1.0168849995", + "1.0222956754", + "1.0110025342", + "0.9559716394", + "0.9610564613", + "0.9603012378", + "1.0071128223", + "0.9625425429", + "0.9449943445", + "1.0224191507", + "0.9756865109", + "0.9507690484", + "0.9638045396", + "0.934420026", + "0.8996336678", + "0.9837217036", + "0.98607549", + "0.9908526997", + "0.9961982977", + "0.9618972719", + "1.0225530212", + "1.0293891366", + "1.0259001341", + "1.0385651995", + "1.0246491567", + "1.0044332505", + "0.9958324818", + "1.04248435", + "1.0617626227", + "1.1124416426", + "0.9553640264", + "0.9245367323", + "1.0175424462", + "1.0165257463", + "1.0037466706", + "0.9606713835", + "1.0254946977", + "1.0164379455", + "1.0190902078", + "1.0502295131", + "0.9918883799", + "0.9771546771", + "0.9587795488", + "0.9870951875", + "0.9586022622", + "1.0137481795", + "1.0447415795", + "1.0673744273", + "1.0240582503", + "0.9954044618", + "1.0156513585", + "0.9954049701", + "0.9817909952", + "0.9465359243", + "0.9814854838", + "0.9125750079", + "0.9298403789", + "1.0126490899", + "1.0010144291", + "0.9981160028", + "1.00827031", + "1.0166331955", + "1.0059558343", + "1.0178964019", + "1.0063629444", + "1.0039014378", + "0.9723123062", + "0.978307212", + "0.9845652092", + "0.9717196638", + "1.0052583007", + "0.9374875124", + "0.9959854527", + "0.9931302201", + "0.9833707526", + "0.9825958762", + "1.008738001", + "0.9853467642", + "0.9550406262", + "0.8697125268", + "0.8815170716", + "0.8825343475", + "0.8265575703", + "0.8386844908", + "0.8353960888", + "0.8167218897", + "0.8254038414", + "0.8213630545", + "0.8113999047", + "0.8372009313", + "0.8338895946", + "0.7972603163", + "0.815798749", + "0.77355749", + "0.7762364288", + "0.7902268441", + "0.7917279538", + "0.7783981087", + "0.7678767146", + "0.7946311469", + "0.7805541998", + "0.7405479027", + "0.7479114383", + "0.9174790018", + "0.737812493", + "0.7423568473", + "0.7459606212", + "0.741908013", + "0.7090259863", + "0.7388346611", + "0.7588939033", + "0.760886627", + "0.7589690276", + "0.7422859386", + "0.741126009", + "0.7068895992", + "0.7091654007", + "0.8350487942", + "0.8462431503", + "0.732529926", + "0.7381873378", + "0.7282586462", + "0.6923904656", + "0.7179988625", + "0.708733748", + "0.7008690002", + "0.7000150698", + "0.7075396257", + "0.7015321519", + "0.7206010708", + "0.714524754", + "0.7262471048", + "0.721014329", + "0.7077980798", + "0.6958643781", + "0.705525104", + "0.7013716197", + "0.7072739223", + "0.6993255775", + "0.6747650418", + "0.6841780083", + "0.6780095929", + "0.7060407805", + "0.7037358329", + "0.696016753", + "0.7098478758", + "0.7225399865", + "0.7534589592", + "0.7570828581", + "0.7458697149", + "0.7619201128", + "0.742470025", + "0.7388933239", + "0.7558103828", + "0.7456113746", + "0.7501701464", + "0.7582231681", + "0.7440083316", + "0.735833125", + "0.7959241045", + "0.7723863312", + "0.7727033572", + "0.7733467711", + "0.7678541764", + "0.7579595523", + "0.8181366287", + "0.7890454958", + "0.7112882618", + "0.7301032812", + "0.7498690394", + "0.7259787297", + "0.7076821044", + "0.6891522185", + "0.70545741", + "0.7128138102", + "0.6952119872", + "0.750720053", + "0.7568913101", + "0.7606089676", + "0.7958710592", + "0.7498826772", + "0.7755584849", + "0.6605222219", + "0.6434037838", + "0.7464315499", + "0.7574202385", + "0.691491529", + "0.6927684054", + "0.6509515575", + "0.6673707285", + "0.598125476", + "0.6218646054", + "0.6092891442", + "0.5870863245", + "0.3853233332", + "0.3916226688", + "0.3716243634", + "0.3841528093", + "0.3826788116", + "0.3510806018", + "0.3608797413", + "0.4098082913", + "0.4452324544", + "0.4200452751", + "0.4007334729", + "0.2678521831", + "0.2796507838", + "0.2793442336", + "0.0", + "0.1675424774", + "0.4952249227", + "0.7154716019", + "0.7200552431", + "0.7297988191", + "0.7095603632", + "0.671255683", + "0.7406491798", + "0.7216128563", + "0.7264745445", + "0.6632626981", + "0.6949748115", + "0.7036108702", + "0.7152686244", + "0.6977040849", + "0.6843397693", + "0.6487067877", + "0.6477924153", + "0.6542591051", + "0.7300973878", + "0.7102139001", + "0.7855967985", + "0.7396072454", + "0.6939496687", + "0.7001547056", + "0.705094995", + "0.6997863363", + "0.6939847353", + "0.7214250043", + "0.7035685405", + "0.6955190469", + "0.6865060799", + "0.7084435569", + "0.7029417121", + "0.7045756041", + "0.668525513", + "0.6706819844", + "0.6438077715", + "0.727071462", + "0.7028096857", + "0.6881678721", + "0.6684365262", + "0.8041602169", + "0.8074200252", + "0.8353270065", + "0.7899628275", + "0.7940661435", + "0.808114623", + "0.8218310888", + "0.84547031", + "0.7866656183", + "0.7646794504", + "0.7932856829", + "0.7615363383", + "0.7648501636", + "0.7778174104", + "0.7581720455", + "0.7654343897", + "0.7510695368", + "0.7469811079", + "0.8287247406", + "0.8209162062", + "0.7752353967", + "0.7960023594", + "0.7926830887", + "0.8458924482", + "0.7732908025", + "0.7575020256", + "0.7751345525", + "0.7759576682", + "0.7773875304", + "0.8028085004", + "0.8147331498", + "0.87319717", + "0.8765835642", + "0.8596292417", + "0.8448613794", + "0.8256352465", + "0.7947693672", + "1.156051429", + "1.1804919055", + "1.144336627", + "1.1549872317", + "1.1322316972", + "1.1184800763", + "1.2088284618", + "1.2376726469", + "1.2387905691", + "1.1630597045", + "1.1605918292", + "1.1606585448", + "1.1544486506", + "1.1725358592", + "1.1485530034", + "1.1244051729", + "1.087202063", + "1.0953450606", + "1.073526482", + "1.0942581315", + "1.0525425612", + "1.0670300941", + "1.0686825203", + "1.0742983613", + "1.0668055459", + "1.0663401468", + "1.0636009989", + "1.0539033718", + "1.0716105941", + "1.0517569585", + "1.0542041094", + "1.049944275", + "1.064602722", + "1.0837028241", + "1.0270007054", + "1.0494014796", + "1.0574391104", + "1.0565812008", + "1.0398378554", + "1.0290600159", + "1.0291911736", + "1.0338838212", + "1.037200595", + "1.069921207", + "1.1011232955", + "1.0960513176", + "1.0199930471", + "1.0208843321", + "1.0161360204", + "1.0221852705", + "0.9432169525", + "0.8401736354", + "0.8538061484", + "1.0930332501", + "1.3008838759", + "1.054524439", + "1.1150397245", + "1.1164316735", + "1.0922950661", + "1.0999735693", + "1.1226939603", + "1.1124954924", + "1.1299045884", + "1.1310586498", + "1.1276213198", + "1.1272823614", + "1.1540668337", + "1.124024316", + "1.1276635945", + "1.131488176", + "1.1317077098", + "1.0950603454", + "1.0999366606", + "1.1209827007", + "1.1014348877", + "1.1087756348", + "1.0606870494", + "1.0531351437", + "1.0838477247", + "1.0800234777", + "1.0923725699", + "1.0972302057", + "1.0918748514", + "1.0914382812", + "1.08248941", + "1.0945058302", + "1.0721550889", + "1.0881036075", + "1.0968163466", + "1.0925310647", + "1.1007286311", + "1.1159848526", + "1.1114542001", + "1.0525484961", + "1.0902990063", + "1.0808004029", + "1.0428944742", + "1.3130698017", + "1.3457064595", + "1.3111830202", + "1.3198618737", + "1.2937523299", + "1.10754249", + "0.9608127181", + "0.9528452928", + "1.0061804039", + "0.9694524892", + "0.9744929803", + "0.9722623822", + "0.9599159615", + "0.9648585626", + "0.9181082781", + "0.9734037542", + "0.9677660029", + "1.0132514258", + "0.991346604", + "0.9837013678", + "0.9710314938", + "0.8839203585", + "0.8878379746", + "0.9959926998", + "0.9785487035", + "0.982496016", + "0.977308365", + "0.9498922322", + "1.0389675972", + "0.9865371633", + "0.9865835382", + "1.0836324081", + "1.1141793709", + "1.0695911846", + "1.076583556", + "1.0493472112", + "1.0547350094", + "1.0539021315", + "1.0460688159", + "0.988689434", + "1.1373031863", + "1.1914681538", + "1.1584910771", + "1.1476894762", + "1.1549953908", + "1.0955905522", + "1.1081913831", + "1.1152489961", + "1.1104869638", + "1.1598500053", + "1.1658368775", + "1.1752357266", + "1.1873271068", + "1.1225031468", + "1.1642918679", + "1.1624234516", + "1.0888378894", + "1.0869656184", + "1.1151613921", + "1.1082647612", + "1.1600835125", + "1.0637594013", + "1.0090887429", + "1.0269024738", + "0.989647078", + "1.0220468055", + "1.1052775663", + "1.1185199225", + "1.1334361499", + "1.1486725571", + "1.0624411526", + "0.9948302017", + "1.0552129196", + "1.1279172139", + "0.9737517087", + "1.0026103108", + "1.0087325594", + "1.0655219313", + "1.0188520494", + "1.0253656952", + "1.0301480412", + "1.0113966805", + "1.0376432274", + "1.1049209294", + "1.1114750936", + "1.1392606086", + "1.1522635988", + "1.1488838988", + "1.0275208184", + "1.0545651255", + "1.01785417", + "1.0232713885", + "1.0752560004", + "1.1075692217", + "1.0995046001", + "1.1079200635", + "1.0950147208", + "1.0821216348", + "1.0866681228", + "1.1402934147", + "1.1956792361", + "1.2924365573", + "1.2055609752", + "1.2049306703", + "1.232756422", + "1.1701440623", + "1.2369901816", + "1.2320362551", + "1.1970111544", + "1.2062746201", + "1.101560739", + "1.3931178043", + "1.3192724956", + "1.328461516", + "1.2559711437", + "1.2682619853", + "1.2578768858", + "1.3600804949", + "1.2873121327", + "1.3254997476", + "1.3195826218", + "1.2974671038", + "1.2266943173", + "1.2294391608", + "1.2740977109", + "1.2678584693", + "1.2724472699", + "1.2378456821", + "1.2294266576", + "1.2213898162", + "1.2810389377", + "1.2398675818", + "1.2475362842", + "1.218057113", + "1.1708040327", + "1.274366685", + "1.2124507961", + "1.2055841514", + "1.2258123833", + "1.3019566409", + "1.3142281995", + "1.3228170627", + "1.3179292941", + "1.3117245677", + "1.3015647729", + "1.3005828841", + "1.2939298022", + "1.4121246797", + "1.3930079548", + "1.2669430747", + "1.3162284177", + "1.3161557358", + "1.3097965074", + "1.3123092779", + "1.378391778", + "1.3729417556", + "1.3278202162", + "1.3137848726", + "1.3111319705", + "1.2996358865", + "1.3183692802", + "1.286845656", + "1.2778015057", + "1.2736399458", + "1.2892006397", + "1.2846709506", + "1.2755690029", + "1.2821389173", + "1.2968142311", + "1.3115648036", + "1.3204991704", + "1.3469638581", + "1.2984944656", + "1.3225062333", + "1.3334312569", + "1.2771196115", + "1.3314393506", + "1.3063714983", + "1.2823089092", + "1.2818101384", + "1.2895034555", + "1.2834683458", + "1.2566004227", + "1.2645454808", + "1.2676876902", + "1.2389679747" + ] + }, + "essential_compounds": [ + "26dap_M", + "C02528", + "ac", + "acald", + "adocbl", + "ala_L", + "alaasp", + "alahis", + "alathr", + "arab_L", + "arabttr", + "asn_L", + "aso3", + "aso4", + "asp_L", + "btn", + "but", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cellb", + "cholate", + "cit", + "cl", + "co2", + "cobalt2", + "cu2", + "dgchol", + "dpcoa", + "dtmp", + "etoh", + "fe2", + "fe3", + "for", + "fru", + "gchola", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "h2", + "h2o", + "h2s", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "k", + "lac_L", + "leu_L", + "lys_L", + "malt", + "malthx", + "malttr", + "met_D", + "met_L", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "no3", + "o2", + "ocdca", + "pb", + "phe_L", + "pi", + "pnto_R", + "pro_L", + "pydam", + "pydx", + "pydxn", + "ribflv", + "so4", + "strch1", + "strch2", + "succ", + "taur", + "tchola", + "tdchola", + "thr_L", + "trp_L", + "tsul", + "tyr_L", + "urea", + "val_L", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_457.json b/agents/agora/agent_457.json new file mode 100644 index 0000000000000000000000000000000000000000..7139cef5c654c7e8ecf2444b6571a78772af9c27 --- /dev/null +++ b/agents/agora/agent_457.json @@ -0,0 +1,933 @@ +{ + "id": 457, + "name": "Kingella_oralis_ATCC_51147", + "N_R": 984, + "taxonomy": { + "k": 457, + "tax_distance": [ + "2.4142163946", + "1.9963385273", + "1.9896392982", + "2.2162220053", + "1.8976219314", + "1.9427506183", + "1.9240453205", + "1.9211027262", + "1.9850843245", + "1.9034402326", + "1.920504936", + "2.0286272498", + "2.0016450281", + "2.229658986", + "2.2780158031", + "2.3083483137", + "2.1886979158", + "2.1976220326", + "2.2330965082", + "1.7660808242", + "1.7014098475", + "1.4508885888", + "1.3842381564", + "1.2627584797", + "1.0885792009", + "1.0827679928", + "1.0794134214", + "1.0817744758", + "1.0660081858", + "1.0573224229", + "1.059773329", + "1.1613592651", + "1.1708970679", + "1.1672631579", + "1.1829592265", + "1.1514576465", + "1.1742035906", + "1.1925095021", + "1.1734775391", + "1.4664181981", + "1.2112598194", + "1.1298987634", + "1.1366640696", + "1.1392716497", + "1.1360399077", + "1.1390132894", + "1.1341146845", + "1.1344997198", + "1.128684809", + "1.1207236194", + "1.0623014414", + "1.0678138414", + "1.0620730081", + "1.0342267375", + "1.0407484816", + "1.0698504788", + "1.043773592", + "1.0417575644", + "1.06251197", + "1.0601720753", + "1.0434302478", + "1.0687810194", + "1.0708558092", + "1.069524916", + "1.0839161335", + "1.0856382954", + "1.0856382954", + "1.0922838781", + "1.0922838781", + "1.0922838781", + "1.0922838781", + "1.0922838781", + "1.0922838781", + "1.0922838781", + "1.0922838781", + "1.0882045154", + "1.0885502526", + "1.082118545", + "1.0926110196", + "1.0917057777", + "1.0878076081", + "1.0860649345", + "1.0873835043", + "1.0838816238", + "1.0788038755", + "1.0821490011", + "1.0875947679", + "1.0830565762", + "1.0680566201", + "1.076427735", + "1.0711523498", + "1.0873002908", + "1.0826030016", + "1.0867365709", + "1.0646968603", + "1.0592966765", + "1.0733630316", + "1.0840234406", + "1.1008204836", + "1.0832301934", + "1.0732350749", + "1.0719172573", + "1.0526668774", + "1.0655453664", + "1.1244178114", + "1.1192658997", + "1.186162157", + "1.152322901", + "1.0895142602", + "1.093240517", + "1.0959739841", + "1.0888699026", + "1.0888699026", + "1.0702460004", + "1.0731501467", + "1.06504963", + "1.1005753287", + "1.0373527792", + "1.0152618658", + "1.0331262221", + "1.0198552268", + "1.0202808192", + "1.1385325328", + "1.1457229836", + "1.1671639965", + "0.9717602808", + "1.1415092341", + "1.1481844682", + "1.1328213759", + "1.1524553811", + "1.1416424671", + "1.1467089534", + "1.1382126758", + "1.1312625707", + "1.1221328736", + "1.122790994", + "1.1417049172", + "1.1148234733", + "1.0968592628", + "1.1907472037", + "1.1921210774", + "1.1614326651", + "1.2190123557", + "1.1565909432", + "1.162084886", + "1.1591238609", + "1.183830846", + "1.1730083972", + "1.0811653252", + "1.0522552357", + "1.0134441757", + "0.9913428825", + "0.9827010762", + "0.9775808851", + "1.0144525108", + "1.0169476367", + "0.9887595678", + "0.9771216139", + "0.9807081229", + "1.0496612337", + "1.0563696158", + "1.0259986692", + "1.1499167424", + "1.144401847", + "1.1467428982", + "1.104465972", + "1.1006119925", + "1.1385185662", + "1.1303417519", + "1.0990997294", + "1.1006590881", + "1.1186790818", + "1.0753742871", + "1.0645381581", + "1.0656987106", + "1.099185052", + "1.0873614993", + "1.0687346421", + "1.0877232644", + "1.0690552657", + "1.0828702079", + "1.0770876369", + "1.0760192549", + "1.0965777066", + "1.0923651592", + "1.0752461138", + "1.1094744878", + "1.0942402461", + "1.0993525551", + "1.0987458696", + "1.0631442392", + "1.059124031", + "1.0436566794", + "1.0620031846", + "1.0589368098", + "1.033245216", + "1.0162324681", + "1.0109248172", + "1.0156666018", + "1.0148079911", + "1.047573951", + "1.0465932892", + "1.0706330868", + "1.0485240598", + "1.0090160678", + "1.0121804786", + "1.0372423706", + "1.0335334865", + "1.0092828698", + "1.0018255199", + "1.0041787792", + "1.0133563141", + "0.9391222172", + "0.981725318", + "0.9660215473", + "0.9598597841", + "0.9535795393", + "0.9414769217", + "0.9446472611", + "0.9868193505", + "1.4212111817", + "1.5059893808", + "1.4185248057", + "1.4037070936", + "1.3820344608", + "0.9357121197", + "0.9545165257", + "1.0044493908", + "0.9660886388", + "0.9813258418", + "1.0948629794", + "1.0486335865", + "1.0702852607", + "1.0289519146", + "0.9422902261", + "0.954672569", + "0.9611636402", + "1.021590177", + "1.0127906444", + "1.0108719134", + "1.0368741945", + "1.0341817589", + "1.0254137033", + "1.0569343269", + "1.0650177914", + "1.0492065182", + "1.0225882684", + "1.0172426953", + "1.0226533712", + "1.01136023", + "0.9563293352", + "0.9614141571", + "0.9606589336", + "1.0074705181", + "0.9629002387", + "0.9453520403", + "1.0227768465", + "0.9760442067", + "0.9511267442", + "0.9641622354", + "0.9347777218", + "0.8999913636", + "0.9840793994", + "0.9864331858", + "0.9912103955", + "0.9965559935", + "0.9622549677", + "1.022910717", + "1.0297468324", + "1.0262578299", + "1.0389228953", + "1.0250068525", + "1.0047909463", + "0.9961901776", + "1.0428420458", + "1.0621203185", + "1.1127993384", + "0.9557217222", + "0.9248944281", + "1.017900142", + "1.0168834421", + "1.0041043664", + "0.9610290793", + "1.0258523935", + "1.0167956413", + "1.0194479036", + "1.0505872089", + "0.9922460757", + "0.9775123729", + "0.9591372446", + "0.9874528833", + "0.958959958", + "1.0141058753", + "1.0450992753", + "1.0677321231", + "1.0244159461", + "0.9957621576", + "1.0160090543", + "0.9957626659", + "0.982148691", + "0.9468936201", + "0.9818431796", + "0.9129327037", + "0.9301980747", + "1.0130067857", + "1.0013721249", + "0.9984736986", + "1.0086280058", + "1.0169908913", + "1.0063135301", + "1.0182540977", + "1.0067206402", + "1.0042591336", + "0.972670002", + "0.9786649078", + "0.984922905", + "0.9720773596", + "1.0056159965", + "0.9378452082", + "0.9963431485", + "0.9934879159", + "0.9837284484", + "0.982953572", + "1.0090956968", + "0.98570446", + "0.955398322", + "0.8700702226", + "0.8818747674", + "0.8828920433", + "0.8269152661", + "0.8390421866", + "0.8357537846", + "0.8170795855", + "0.8257615372", + "0.8217207503", + "0.8117576005", + "0.8375586271", + "0.8342472904", + "0.7976180121", + "0.8161564448", + "0.7739151858", + "0.7765941246", + "0.7905845399", + "0.7920856496", + "0.7787558045", + "0.7682344104", + "0.7949888427", + "0.7809118956", + "0.7409055985", + "0.7482691341", + "0.9178366976", + "0.7381701888", + "0.7427145431", + "0.746318317", + "0.7422657088", + "0.7093836821", + "0.7391923569", + "0.7592515991", + "0.7612443228", + "0.7593267234", + "0.7426436344", + "0.7414837048", + "0.707247295", + "0.7095230965", + "0.83540649", + "0.8466008461", + "0.7328876218", + "0.7385450336", + "0.728616342", + "0.6927481614", + "0.7183565583", + "0.7090914438", + "0.701226696", + "0.7003727656", + "0.7078973215", + "0.7018898477", + "0.7209587666", + "0.7148824498", + "0.7266048006", + "0.7213720248", + "0.7081557756", + "0.6962220739", + "0.7058827998", + "0.7017293155", + "0.7076316181", + "0.6996832733", + "0.6751227376", + "0.6845357041", + "0.6783672887", + "0.7063984763", + "0.7040935287", + "0.6963744488", + "0.7102055716", + "0.7228976823", + "0.753816655", + "0.7574405539", + "0.7462274107", + "0.7622778086", + "0.7428277208", + "0.7392510197", + "0.7561680786", + "0.7459690704", + "0.7505278422", + "0.7585808639", + "0.7443660274", + "0.7361908208", + "0.7962818003", + "0.772744027", + "0.773061053", + "0.7737044669", + "0.7682118722", + "0.7583172481", + "0.8184943245", + "0.7894031916", + "0.7116459576", + "0.730460977", + "0.7502267352", + "0.7263364255", + "0.7080398002", + "0.6895099143", + "0.7058151058", + "0.713171506", + "0.695569683", + "0.7510777488", + "0.7572490059", + "0.7609666634", + "0.796228755", + "0.750240373", + "0.7759161807", + "0.6608799177", + "0.6437614796", + "0.7467892457", + "0.7577779343", + "0.6918492248", + "0.6931261012", + "0.6513092533", + "0.6677284243", + "0.5984831718", + "0.6222223012", + "0.60964684", + "0.5874440203", + "0.385681029", + "0.3919803646", + "0.3719820592", + "0.3845105051", + "0.3830365074", + "0.3514382976", + "0.3612374371", + "0.4101659871", + "0.4455901502", + "0.4204029709", + "0.4010911687", + "0.2682098789", + "0.2800084796", + "0.2797019294", + "0.1675424774", + "0.0", + "0.4955826185", + "0.7158292977", + "0.7204129389", + "0.7301565149", + "0.709918059", + "0.6716133788", + "0.7410068756", + "0.7219705521", + "0.7268322403", + "0.6636203939", + "0.6953325073", + "0.703968566", + "0.7156263202", + "0.6980617807", + "0.6846974651", + "0.6490644835", + "0.6481501111", + "0.6546168009", + "0.7304550836", + "0.7105715959", + "0.7859544943", + "0.7399649412", + "0.6943073645", + "0.7005124014", + "0.7054526908", + "0.7001440321", + "0.6943424311", + "0.7217827001", + "0.7039262363", + "0.6958767427", + "0.6868637757", + "0.7088012527", + "0.7032994079", + "0.7049332999", + "0.6688832088", + "0.6710396802", + "0.6441654673", + "0.7274291578", + "0.7031673815", + "0.6885255679", + "0.668794222", + "0.8045179127", + "0.807777721", + "0.8356847023", + "0.7903205233", + "0.7944238393", + "0.8084723188", + "0.8221887846", + "0.8458280058", + "0.7870233141", + "0.7650371462", + "0.7936433787", + "0.7618940341", + "0.7652078594", + "0.7781751062", + "0.7585297413", + "0.7657920855", + "0.7514272326", + "0.7473388037", + "0.8290824364", + "0.821273902", + "0.7755930925", + "0.7963600552", + "0.7930407845", + "0.846250144", + "0.7736484983", + "0.7578597214", + "0.7754922483", + "0.776315364", + "0.7777452262", + "0.8031661962", + "0.8150908456", + "0.8735548658", + "0.87694126", + "0.8599869375", + "0.8452190752", + "0.8259929423", + "0.795127063", + "1.1564091248", + "1.1808496013", + "1.1446943228", + "1.1553449275", + "1.132589393", + "1.1188377721", + "1.2091861576", + "1.2380303427", + "1.2391482649", + "1.1634174003", + "1.160949525", + "1.1610162406", + "1.1548063464", + "1.172893555", + "1.1489106992", + "1.1247628687", + "1.0875597588", + "1.0957027564", + "1.0738841778", + "1.0946158273", + "1.052900257", + "1.0673877899", + "1.0690402161", + "1.0746560571", + "1.0671632417", + "1.0666978426", + "1.0639586947", + "1.0542610676", + "1.0719682899", + "1.0521146543", + "1.0545618052", + "1.0503019708", + "1.0649604178", + "1.0840605199", + "1.0273584012", + "1.0497591754", + "1.0577968062", + "1.0569388966", + "1.0401955512", + "1.0294177117", + "1.0295488694", + "1.034241517", + "1.0375582908", + "1.0702789028", + "1.1014809913", + "1.0964090134", + "1.0203507429", + "1.0212420279", + "1.0164937162", + "1.0225429663", + "0.9435746483", + "0.8405313312", + "0.8541638442", + "1.0933909459", + "1.3012415717", + "1.0548821348", + "1.1153974203", + "1.1167893693", + "1.0926527619", + "1.1003312651", + "1.1230516561", + "1.1128531882", + "1.1302622842", + "1.1314163456", + "1.1279790156", + "1.1276400572", + "1.1544245295", + "1.1243820118", + "1.1280212903", + "1.1318458718", + "1.1320654056", + "1.0954180412", + "1.1002943564", + "1.1213403965", + "1.1017925835", + "1.1091333306", + "1.0610447452", + "1.0534928395", + "1.0842054205", + "1.0803811735", + "1.0927302657", + "1.0975879015", + "1.0922325472", + "1.091795977", + "1.0828471058", + "1.094863526", + "1.0725127847", + "1.0884613033", + "1.0971740424", + "1.0928887605", + "1.1010863269", + "1.1163425484", + "1.1118118959", + "1.0529061919", + "1.0906567021", + "1.0811580987", + "1.04325217", + "1.3134274975", + "1.3460641553", + "1.311540716", + "1.3202195695", + "1.2941100257", + "1.1079001858", + "0.9611704139", + "0.9532029886", + "1.0065380997", + "0.969810185", + "0.9748506761", + "0.972620078", + "0.9602736573", + "0.9652162584", + "0.9184659739", + "0.97376145", + "0.9681236987", + "1.0136091216", + "0.9917042998", + "0.9840590636", + "0.9713891896", + "0.8842780543", + "0.8881956704", + "0.9963503956", + "0.9789063993", + "0.9828537118", + "0.9776660608", + "0.950249928", + "1.039325293", + "0.9868948591", + "0.986941234", + "1.0839901039", + "1.1145370667", + "1.0699488804", + "1.0769412518", + "1.049704907", + "1.0550927052", + "1.0542598273", + "1.0464265117", + "0.9890471298", + "1.1376608821", + "1.1918258496", + "1.1588487729", + "1.148047172", + "1.1553530866", + "1.095948248", + "1.1085490789", + "1.1156066919", + "1.1108446596", + "1.1602077011", + "1.1661945733", + "1.1755934224", + "1.1876848026", + "1.1228608426", + "1.1646495637", + "1.1627811474", + "1.0891955852", + "1.0873233142", + "1.1155190879", + "1.108622457", + "1.1604412083", + "1.0641170971", + "1.0094464387", + "1.0272601696", + "0.9900047738", + "1.0224045013", + "1.1056352621", + "1.1188776183", + "1.1337938457", + "1.1490302529", + "1.0627988484", + "0.9951878975", + "1.0555706154", + "1.1282749097", + "0.9741094045", + "1.0029680066", + "1.0090902552", + "1.0658796271", + "1.0192097452", + "1.025723391", + "1.030505737", + "1.0117543763", + "1.0380009232", + "1.1052786252", + "1.1118327894", + "1.1396183044", + "1.1526212946", + "1.1492415946", + "1.0278785142", + "1.0549228213", + "1.0182118658", + "1.0236290843", + "1.0756136962", + "1.1079269175", + "1.0998622959", + "1.1082777593", + "1.0953724166", + "1.0824793306", + "1.0870258186", + "1.1406511105", + "1.1960369319", + "1.2927942531", + "1.205918671", + "1.2052883661", + "1.2331141178", + "1.1705017581", + "1.2373478774", + "1.2323939509", + "1.1973688502", + "1.2066323159", + "1.1019184348", + "1.3934755001", + "1.3196301914", + "1.3288192118", + "1.2563288395", + "1.2686196811", + "1.2582345816", + "1.3604381907", + "1.2876698285", + "1.3258574434", + "1.3199403176", + "1.2978247996", + "1.2270520131", + "1.2297968566", + "1.2744554067", + "1.2682161651", + "1.2728049657", + "1.2382033779", + "1.2297843534", + "1.221747512", + "1.2813966335", + "1.2402252776", + "1.24789398", + "1.2184148088", + "1.1711617285", + "1.2747243808", + "1.2128084919", + "1.2059418472", + "1.2261700791", + "1.3023143367", + "1.3145858953", + "1.3231747585", + "1.3182869899", + "1.3120822635", + "1.3019224687", + "1.3009405799", + "1.294287498", + "1.4124823755", + "1.3933656506", + "1.2673007705", + "1.3165861135", + "1.3165134316", + "1.3101542032", + "1.3126669737", + "1.3787494738", + "1.3732994514", + "1.328177912", + "1.3141425684", + "1.3114896663", + "1.2999935823", + "1.318726976", + "1.2872033518", + "1.2781592015", + "1.2739976416", + "1.2895583355", + "1.2850286464", + "1.2759266987", + "1.2824966131", + "1.2971719269", + "1.3119224994", + "1.3208568662", + "1.3473215539", + "1.2988521614", + "1.3228639291", + "1.3337889527", + "1.2774773073", + "1.3317970464", + "1.3067291941", + "1.282666605", + "1.2821678342", + "1.2898611513", + "1.2838260416", + "1.2569581185", + "1.2649031766", + "1.268045386", + "1.2393256705" + ] + }, + "essential_compounds": [ + "26dap_M", + "C02528", + "ac", + "acald", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_L", + "arabttr", + "arg_L", + "asn_L", + "asp_L", + "btn", + "but", + "ca2", + "cd2", + "cellb", + "cgly", + "cholate", + "cl", + "co2", + "cobalt2", + "cu2", + "cys_L", + "dgchol", + "dpcoa", + "etoh", + "fe2", + "fe3", + "for", + "fru", + "gchola", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "h2", + "h2o", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "ispre", + "k", + "lac_L", + "leu_L", + "lys_L", + "malt", + "malthx", + "malttr", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "na1", + "nac", + "nh4", + "nmn", + "no2", + "no3", + "o2", + "pb", + "phe_L", + "pi", + "pnto_R", + "pro_L", + "pydam", + "pydx", + "pydxn", + "ribflv", + "so4", + "strch1", + "strch2", + "succ", + "taur", + "tchola", + "tdchola", + "thr_L", + "trp_L", + "tyr_L", + "urea", + "uri", + "val_L", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_458.json b/agents/agora/agent_458.json new file mode 100644 index 0000000000000000000000000000000000000000..cb71d8fcc194487541ca215db25b84a6f2c10845 --- /dev/null +++ b/agents/agora/agent_458.json @@ -0,0 +1,950 @@ +{ + "id": 458, + "name": "Klebsiella_oxytoca_KCTC_1686", + "N_R": 656, + "taxonomy": { + "k": 458, + "tax_distance": [ + "2.3469338735", + "1.9290560062", + "1.9223567771", + "2.1489394842", + "1.8303394103", + "1.8754680972", + "1.8567627994", + "1.8538202051", + "1.9178018034", + "1.8361577115", + "1.8532224149", + "1.9613447287", + "1.934362507", + "2.1623764649", + "2.210733282", + "2.2410657926", + "2.1214153947", + "2.1303395115", + "2.1658139871", + "1.6987983031", + "1.6341273264", + "1.3836060677", + "1.3169556353", + "1.1954759586", + "1.0212966798", + "1.0154854717", + "1.0121309003", + "1.0144919547", + "0.9987256647", + "0.9900399018", + "0.9924908079", + "1.094076744", + "1.1036145468", + "1.0999806368", + "1.1156767054", + "1.0841751254", + "1.1069210695", + "1.125226981", + "1.106195018", + "1.399135677", + "1.1439772983", + "1.0626162423", + "1.0693815485", + "1.0719891286", + "1.0687573866", + "1.0717307683", + "1.0668321634", + "1.0672171987", + "1.0614022879", + "1.0534410983", + "0.9950189203", + "1.0005313203", + "0.994790487", + "0.9669442164", + "0.9734659605", + "1.0025679577", + "0.9764910709", + "0.9744750433", + "0.9952294489", + "0.9928895542", + "0.9761477267", + "1.0014984983", + "1.0035732881", + "1.0022423949", + "1.0166336124", + "1.0183557743", + "1.0183557743", + "1.025001357", + "1.025001357", + "1.025001357", + "1.025001357", + "1.025001357", + "1.025001357", + "1.025001357", + "1.025001357", + "1.0209219943", + "1.0212677315", + "1.0148360239", + "1.0253284985", + "1.0244232566", + "1.020525087", + "1.0187824134", + "1.0201009832", + "1.0165991027", + "1.0115213544", + "1.01486648", + "1.0203122468", + "1.0157740551", + "1.000774099", + "1.0091452139", + "1.0038698287", + "1.0200177697", + "1.0153204805", + "1.0194540498", + "0.9974143392", + "0.9920141554", + "1.0060805105", + "1.0167409195", + "1.0335379625", + "1.0159476723", + "1.0059525538", + "1.0046347362", + "0.9853843563", + "0.9982628453", + "1.0571352903", + "1.0519833786", + "1.1188796359", + "1.0850403799", + "1.0222317391", + "1.0259579959", + "1.028691463", + "1.0215873815", + "1.0215873815", + "1.0029634793", + "1.0058676256", + "0.9977671089", + "1.0332928076", + "0.9700702581", + "0.9479793447", + "0.965843701", + "0.9525727057", + "0.9529982981", + "1.0712500117", + "1.0784404625", + "1.0998814754", + "0.9044777597", + "1.074226713", + "1.0809019471", + "1.0655388548", + "1.08517286", + "1.074359946", + "1.0794264323", + "1.0709301547", + "1.0639800496", + "1.0548503525", + "1.0555084729", + "1.0744223961", + "1.0475409522", + "1.0295767417", + "1.1234646826", + "1.1248385563", + "1.094150144", + "1.1517298346", + "1.0893084221", + "1.0948023649", + "1.0918413398", + "1.1165483249", + "1.1057258761", + "1.0138828041", + "0.9849727146", + "0.9461616546", + "0.9240603614", + "0.9154185551", + "0.910298364", + "0.9471699897", + "0.9496651156", + "0.9214770467", + "0.9098390928", + "0.9134256018", + "0.9823787126", + "0.9890870947", + "0.9587161481", + "1.0826342213", + "1.0771193259", + "1.0794603771", + "1.0371834509", + "1.0333294714", + "1.0712360451", + "1.0630592308", + "1.0318172083", + "1.033376567", + "1.0513965607", + "1.008091766", + "0.997255637", + "0.9984161895", + "1.0319025309", + "1.0200789782", + "1.001452121", + "1.0204407433", + "1.0017727446", + "1.0155876868", + "1.0098051158", + "1.0087367338", + "1.0292951855", + "1.0250826381", + "1.0079635927", + "1.0421919667", + "1.026957725", + "1.032070034", + "1.0314633485", + "0.9958617181", + "0.9918415099", + "0.9763741583", + "0.9947206635", + "0.9916542887", + "0.9659626949", + "0.948949947", + "0.9436422961", + "0.9483840807", + "0.94752547", + "0.9802914299", + "0.9793107681", + "1.0033505657", + "0.9812415387", + "0.9417335467", + "0.9448979575", + "0.9699598495", + "0.9662509654", + "0.9420003487", + "0.9345429988", + "0.9368962581", + "0.946073793", + "0.8718396961", + "0.9144427969", + "0.8987390262", + "0.892577263", + "0.8862970182", + "0.8741944006", + "0.87736474", + "0.9195368294", + "1.3539286606", + "1.4387068597", + "1.3512422846", + "1.3364245725", + "1.3147519397", + "0.8684295986", + "0.8872340046", + "0.9371668697", + "0.8988061177", + "0.9140433207", + "1.0275804583", + "0.9813510654", + "1.0030027396", + "0.9616693935", + "0.875007705", + "0.8873900479", + "0.8938811191", + "0.9543076559", + "0.9455081233", + "0.9435893923", + "0.9695916734", + "0.9668992378", + "0.9581311822", + "0.9896518058", + "0.9977352703", + "0.9819239971", + "0.9553057473", + "0.9499601742", + "0.9553708501", + "0.9440777089", + "0.8890468141", + "0.894131636", + "0.8933764125", + "0.940187997", + "0.8956177176", + "0.8780695192", + "0.9554943254", + "0.9087616856", + "0.8838442231", + "0.8968797143", + "0.8674952007", + "0.8327088425", + "0.9167968783", + "0.9191506647", + "0.9239278744", + "0.9292734724", + "0.8949724466", + "0.9556281959", + "0.9624643113", + "0.9589753088", + "0.9716403742", + "0.9577243314", + "0.9375084252", + "0.9289076565", + "0.9755595247", + "0.9948377974", + "1.0455168173", + "0.8884392011", + "0.857611907", + "0.9506176209", + "0.949600921", + "0.9368218453", + "0.8937465582", + "0.9585698724", + "0.9495131202", + "0.9521653825", + "0.9833046878", + "0.9249635546", + "0.9102298518", + "0.8918547235", + "0.9201703622", + "0.8916774369", + "0.9468233542", + "0.9778167542", + "1.000449602", + "0.957133425", + "0.9284796365", + "0.9487265332", + "0.9284801448", + "0.9148661699", + "0.879611099", + "0.9145606585", + "0.8456501826", + "0.8629155536", + "0.9457242646", + "0.9340896038", + "0.9311911775", + "0.9413454847", + "0.9497083702", + "0.939031009", + "0.9509715766", + "0.9394381191", + "0.9369766125", + "0.9053874809", + "0.9113823867", + "0.9176403839", + "0.9047948385", + "0.9383334754", + "0.8705626871", + "0.9290606274", + "0.9262053948", + "0.9164459273", + "0.9156710509", + "0.9418131757", + "0.9184219389", + "0.8881158009", + "0.8027877015", + "0.8145922463", + "0.8156095222", + "0.759632745", + "0.7717596655", + "0.7684712635", + "0.7497970644", + "0.7584790161", + "0.7544382292", + "0.7444750794", + "0.770276106", + "0.7669647693", + "0.730335491", + "0.7488739237", + "0.7066326647", + "0.7093116035", + "0.7233020188", + "0.7248031285", + "0.7114732834", + "0.7009518893", + "0.7277063216", + "0.7136293745", + "0.6736230774", + "0.680986613", + "0.8505541765", + "0.6708876677", + "0.675432022", + "0.6790357959", + "0.6749831877", + "0.642101161", + "0.6719098358", + "0.691969078", + "0.6939618017", + "0.6920442023", + "0.6753611133", + "0.6742011837", + "0.6399647739", + "0.6422405754", + "0.7681239689", + "0.779318325", + "0.6656051007", + "0.6712625125", + "0.6613338209", + "0.6254656403", + "0.6510740372", + "0.6418089227", + "0.6339441749", + "0.6330902445", + "0.6406148004", + "0.6346073266", + "0.6536762455", + "0.6475999287", + "0.6593222795", + "0.6540895037", + "0.6408732545", + "0.6289395528", + "0.6386002787", + "0.6344467944", + "0.640349097", + "0.6324007522", + "0.6078402165", + "0.617253183", + "0.6110847676", + "0.6391159552", + "0.6368110076", + "0.6290919277", + "0.6429230505", + "0.6556151612", + "0.6865341339", + "0.6901580328", + "0.6789448896", + "0.6949952875", + "0.6755451997", + "0.6719684986", + "0.6888855575", + "0.6786865493", + "0.6832453211", + "0.6912983428", + "0.6770835063", + "0.6689082997", + "0.7289992792", + "0.7054615059", + "0.7057785319", + "0.7064219458", + "0.7009293511", + "0.691034727", + "0.7512118034", + "0.7221206705", + "0.6443634365", + "0.6631784559", + "0.6829442141", + "0.6590539044", + "0.6407572791", + "0.6222273932", + "0.6385325847", + "0.6458889849", + "0.6282871619", + "0.6837952277", + "0.6899664848", + "0.6936841423", + "0.7289462339", + "0.6829578519", + "0.7086336596", + "0.5935973966", + "0.5764789585", + "0.6795067246", + "0.6904954132", + "0.6245667037", + "0.6258435801", + "0.5840267322", + "0.6004459032", + "0.5312006507", + "0.5549397801", + "0.5423643189", + "0.5201614992", + "0.4886529123", + "0.4949522479", + "0.4749539425", + "0.4874823884", + "0.4860083907", + "0.4544101809", + "0.4642093204", + "0.5131378704", + "0.5485620335", + "0.5233748542", + "0.504063052", + "0.4529169768", + "0.4647155775", + "0.4644090273", + "0.4952249227", + "0.4955826185", + "0.0", + "0.6485467766", + "0.6531304178", + "0.6628739938", + "0.6426355379", + "0.6043308577", + "0.6737243545", + "0.654688031", + "0.6595497192", + "0.5963378728", + "0.6280499862", + "0.6366860449", + "0.6483437991", + "0.6307792596", + "0.617414944", + "0.5817819624", + "0.58086759", + "0.5873342798", + "0.6631725625", + "0.6432890748", + "0.7186719732", + "0.6726824201", + "0.6270248434", + "0.6332298803", + "0.6381701697", + "0.632861511", + "0.62705991", + "0.654500179", + "0.6366437152", + "0.6285942216", + "0.6195812546", + "0.6415187316", + "0.6360168868", + "0.6376507788", + "0.6016006877", + "0.6037571591", + "0.5768829462", + "0.6601466367", + "0.6358848604", + "0.6212430468", + "0.6015117009", + "0.7372353916", + "0.7404951999", + "0.7684021812", + "0.7230380022", + "0.7271413182", + "0.7411897977", + "0.7549062635", + "0.7785454847", + "0.719740793", + "0.6977546251", + "0.7263608576", + "0.694611513", + "0.6979253383", + "0.7108925851", + "0.6912472202", + "0.6985095644", + "0.6841447115", + "0.6800562826", + "0.7617999153", + "0.7539913809", + "0.7083105714", + "0.7290775341", + "0.7257582634", + "0.7789676229", + "0.7063659772", + "0.6905772003", + "0.7082097272", + "0.7090328429", + "0.7104627051", + "0.7358836751", + "0.7478083245", + "0.8062723447", + "0.8096587389", + "0.7927044164", + "0.7779365541", + "0.7587104212", + "0.7278445419", + "1.0891266037", + "1.1135670802", + "1.0774118017", + "1.0880624064", + "1.0653068719", + "1.051555251", + "1.1419036365", + "1.1707478216", + "1.1718657438", + "1.0961348792", + "1.0936670039", + "1.0937337195", + "1.0875238253", + "1.1056110339", + "1.0816281781", + "1.0574803476", + "1.0202772377", + "1.0284202353", + "1.0066016567", + "1.0273333062", + "0.9856177359", + "1.0001052688", + "1.001757695", + "1.007373536", + "0.9998807206", + "0.9994153215", + "0.9966761736", + "0.9869785465", + "1.0046857688", + "0.9848321332", + "0.9872792841", + "0.9830194497", + "0.9976778967", + "1.0167779988", + "0.9600758801", + "0.9824766543", + "0.9905142851", + "0.9896563755", + "0.9729130301", + "0.9621351906", + "0.9622663483", + "0.9669589959", + "0.9702757697", + "1.0029963817", + "1.0341984702", + "1.0291264923", + "0.9530682218", + "0.9539595068", + "0.9492111951", + "0.9552604452", + "0.8762921272", + "0.7732488101", + "0.7868813231", + "1.0261084248", + "1.2339590506", + "0.9875996137", + "1.0481148992", + "1.0495068482", + "1.0253702408", + "1.033048744", + "1.055769135", + "1.0455706671", + "1.0629797631", + "1.0641338245", + "1.0606964945", + "1.0603575361", + "1.0871420084", + "1.0570994907", + "1.0607387692", + "1.0645633507", + "1.0647828845", + "1.0281355201", + "1.0330118353", + "1.0540578754", + "1.0345100624", + "1.0418508095", + "0.9937622241", + "0.9862103184", + "1.0169228994", + "1.0130986524", + "1.0254477446", + "1.0303053804", + "1.0249500261", + "1.0245134559", + "1.0155645847", + "1.0275810049", + "1.0052302636", + "1.0211787822", + "1.0298915213", + "1.0256062394", + "1.0338038058", + "1.0490600273", + "1.0445293748", + "0.9856236708", + "1.023374181", + "1.0138755776", + "0.9759696489", + "1.2461449764", + "1.2787816342", + "1.2442581949", + "1.2529370484", + "1.2268275046", + "1.0406176647", + "0.8938878928", + "0.8859204675", + "0.9392555786", + "0.9025276639", + "0.907568155", + "0.9053375569", + "0.8929911362", + "0.8979337373", + "0.8511834528", + "0.9064789289", + "0.9008411776", + "0.9463266005", + "0.9244217787", + "0.9167765425", + "0.9041066685", + "0.8169955332", + "0.8209131493", + "0.9290678745", + "0.9116238782", + "0.9155711907", + "0.9103835397", + "0.8829674069", + "0.9720427719", + "0.919612338", + "0.9196587129", + "1.0167075828", + "1.0472545456", + "1.0026663593", + "1.0096587307", + "0.9824223859", + "0.9878101841", + "0.9869773062", + "0.9791439906", + "0.9217646087", + "1.070378361", + "1.1245433285", + "1.0915662518", + "1.0807646509", + "1.0880705655", + "1.0286657269", + "1.0412665578", + "1.0483241708", + "1.0435621385", + "1.09292518", + "1.0989120522", + "1.1083109013", + "1.1204022815", + "1.0555783215", + "1.0973670426", + "1.0954986263", + "1.0219130641", + "1.0200407931", + "1.0482365668", + "1.0413399359", + "1.0931586872", + "0.996834576", + "0.9421639176", + "0.9599776485", + "0.9227222527", + "0.9551219802", + "1.038352741", + "1.0515950972", + "1.0665113246", + "1.0817477318", + "0.9955163273", + "0.9279053764", + "0.9882880943", + "1.0609923886", + "0.9068268834", + "0.9356854855", + "0.9418077341", + "0.998597106", + "0.9519272241", + "0.9584408699", + "0.9632232159", + "0.9444718552", + "0.9707184021", + "1.0379961041", + "1.0445502683", + "1.0723357833", + "1.0853387735", + "1.0819590735", + "0.9605959931", + "0.9876403002", + "0.9509293447", + "0.9563465632", + "1.0083311751", + "1.0406443964", + "1.0325797748", + "1.0409952382", + "1.0280898955", + "1.0151968095", + "1.0197432975", + "1.0733685894", + "1.1287544108", + "1.225511732", + "1.1386361499", + "1.138005845", + "1.1658315967", + "1.103219237", + "1.1700653563", + "1.1651114298", + "1.1300863291", + "1.1393497948", + "1.0346359137", + "1.326192979", + "1.2523476703", + "1.2615366907", + "1.1890463184", + "1.20133716", + "1.1909520605", + "1.2931556696", + "1.2203873074", + "1.2585749223", + "1.2526577965", + "1.2305422785", + "1.159769492", + "1.1625143355", + "1.2071728856", + "1.200933644", + "1.2055224446", + "1.1709208568", + "1.1625018323", + "1.1544649909", + "1.2141141124", + "1.1729427565", + "1.1806114589", + "1.1511322877", + "1.1038792074", + "1.2074418597", + "1.1455259708", + "1.1386593261", + "1.158887558", + "1.2350318156", + "1.2473033742", + "1.2558922374", + "1.2510044688", + "1.2447997424", + "1.2346399476", + "1.2336580588", + "1.2270049769", + "1.3451998544", + "1.3260831295", + "1.2000182494", + "1.2493035924", + "1.2492309105", + "1.2428716821", + "1.2453844526", + "1.3114669527", + "1.3060169303", + "1.2608953909", + "1.2468600473", + "1.2442071452", + "1.2327110612", + "1.2514444549", + "1.2199208307", + "1.2108766804", + "1.2067151205", + "1.2222758144", + "1.2177461253", + "1.2086441776", + "1.215214092", + "1.2298894058", + "1.2446399783", + "1.2535743451", + "1.2800390328", + "1.2315696403", + "1.255581408", + "1.2665064316", + "1.2101947862", + "1.2645145253", + "1.239446673", + "1.2153840839", + "1.2148853131", + "1.2225786302", + "1.2165435205", + "1.1896755974", + "1.1976206555", + "1.2007628649", + "1.1720431494" + ] + }, + "essential_compounds": [ + "12dgr180", + "26dap_M", + "2dmmq8", + "2obut", + "3mop", + "ac", + "acac", + "acald", + "ade", + "adocbl", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "alltn", + "amp", + "arg_L", + "asn_L", + "aso3", + "aso4", + "asp_L", + "btn", + "but", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cgly", + "cl", + "co2", + "cobalt2", + "cro4", + "csn", + "cu2", + "cys_L", + "cytd", + "dad_2", + "dcyt", + "dgsn", + "fe2", + "fe3", + "fol", + "for", + "gcald", + "glc_D", + "glcn", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glyb", + "glyc", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gua", + "h2", + "h2o", + "h", + "hg2", + "his_L", + "hxan", + "ile_L", + "k", + "lac_D", + "lac_L", + "leu_L", + "lys_L", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mqn8", + "n2", + "na1", + "nac", + "nh4", + "o2", + "orn", + "pb", + "phe_L", + "pheme", + "pi", + "pnto_R", + "ppa", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "pyr", + "q8", + "ribflv", + "ser_L", + "sheme", + "so4", + "spmd", + "succ", + "thm", + "thr_L", + "thymd", + "trp_L", + "tyr_L", + "ura", + "uri", + "val_L", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_459.json b/agents/agora/agent_459.json new file mode 100644 index 0000000000000000000000000000000000000000..5e2d4dec28661f66856a66bdd359f9f9e39473db --- /dev/null +++ b/agents/agora/agent_459.json @@ -0,0 +1,945 @@ +{ + "id": 459, + "name": "Klebsiella_pneumoniae_pneumoniae_MGH78578", + "N_R": 1357, + "taxonomy": { + "k": 459, + "tax_distance": [ + "2.4450940333", + "2.027216166", + "2.0205169369", + "2.247099644", + "1.9284995701", + "1.973628257", + "1.9549229592", + "1.9519803649", + "2.0159619632", + "1.9343178713", + "1.9513825747", + "2.0595048885", + "2.0325226668", + "2.2605366247", + "2.3088934418", + "2.3392259524", + "2.2195755545", + "2.2284996713", + "2.2639741469", + "1.7969584629", + "1.7322874862", + "1.4817662275", + "1.4151157951", + "1.2936361184", + "1.1194568396", + "1.1136456315", + "1.1102910601", + "1.1126521145", + "1.0968858245", + "1.0882000616", + "1.0906509677", + "1.1922369038", + "1.2017747066", + "1.1981407966", + "1.2138368652", + "1.1823352852", + "1.2050812293", + "1.2233871408", + "1.2043551778", + "1.4972958368", + "1.2421374581", + "1.1607764021", + "1.1675417083", + "1.1701492884", + "1.1669175464", + "1.1698909281", + "1.1649923232", + "1.1653773585", + "1.1595624477", + "1.1516012581", + "1.0931790801", + "1.0986914801", + "1.0929506468", + "1.0651043762", + "1.0716261203", + "1.1007281175", + "1.0746512307", + "1.0726352031", + "1.0933896087", + "1.091049714", + "1.0743078865", + "1.0996586581", + "1.1017334479", + "1.1004025547", + "1.1147937722", + "1.1165159341", + "1.1165159341", + "1.1231615168", + "1.1231615168", + "1.1231615168", + "1.1231615168", + "1.1231615168", + "1.1231615168", + "1.1231615168", + "1.1231615168", + "1.1190821541", + "1.1194278913", + "1.1129961837", + "1.1234886583", + "1.1225834164", + "1.1186852468", + "1.1169425732", + "1.118261143", + "1.1147592625", + "1.1096815142", + "1.1130266398", + "1.1184724066", + "1.1139342149", + "1.0989342588", + "1.1073053737", + "1.1020299885", + "1.1181779295", + "1.1134806403", + "1.1176142096", + "1.095574499", + "1.0901743152", + "1.1042406703", + "1.1149010793", + "1.1316981223", + "1.1141078321", + "1.1041127136", + "1.102794896", + "1.0835445161", + "1.0964230051", + "1.1552954501", + "1.1501435384", + "1.2170397957", + "1.1832005397", + "1.1203918989", + "1.1241181557", + "1.1268516228", + "1.1197475413", + "1.1197475413", + "1.1011236391", + "1.1040277854", + "1.0959272687", + "1.1314529674", + "1.0682304179", + "1.0461395045", + "1.0640038608", + "1.0507328655", + "1.0511584579", + "1.1694101715", + "1.1766006223", + "1.1980416352", + "1.0026379195", + "1.1723868728", + "1.1790621069", + "1.1636990146", + "1.1833330198", + "1.1725201058", + "1.1775865921", + "1.1690903145", + "1.1621402094", + "1.1530105123", + "1.1536686327", + "1.1725825559", + "1.145701112", + "1.1277369015", + "1.2216248424", + "1.2229987161", + "1.1923103038", + "1.2498899944", + "1.1874685819", + "1.1929625247", + "1.1900014996", + "1.2147084847", + "1.2038860359", + "1.1120429639", + "1.0831328744", + "1.0443218144", + "1.0222205212", + "1.0135787149", + "1.0084585238", + "1.0453301495", + "1.0478252754", + "1.0196372065", + "1.0079992526", + "1.0115857616", + "1.0805388724", + "1.0872472545", + "1.0568763079", + "1.1807943811", + "1.1752794857", + "1.1776205369", + "1.1353436107", + "1.1314896312", + "1.1693962049", + "1.1612193906", + "1.1299773681", + "1.1315367268", + "1.1495567205", + "1.1062519258", + "1.0954157968", + "1.0965763493", + "1.1300626907", + "1.118239138", + "1.0996122808", + "1.1186009031", + "1.0999329044", + "1.1137478466", + "1.1079652756", + "1.1068968936", + "1.1274553453", + "1.1232427979", + "1.1061237525", + "1.1403521265", + "1.1251178848", + "1.1302301938", + "1.1296235083", + "1.0940218779", + "1.0900016697", + "1.0745343181", + "1.0928808233", + "1.0898144485", + "1.0641228547", + "1.0471101068", + "1.0418024559", + "1.0465442405", + "1.0456856298", + "1.0784515897", + "1.0774709279", + "1.1015107255", + "1.0794016985", + "1.0398937065", + "1.0430581173", + "1.0681200093", + "1.0644111252", + "1.0401605085", + "1.0327031586", + "1.0350564179", + "1.0442339528", + "0.9699998559", + "1.0126029567", + "0.996899186", + "0.9907374228", + "0.984457178", + "0.9723545604", + "0.9755248998", + "1.0176969892", + "1.4520888204", + "1.5368670195", + "1.4494024444", + "1.4345847323", + "1.4129120995", + "0.9665897584", + "0.9853941644", + "1.0353270295", + "0.9969662775", + "1.0122034805", + "1.1257406181", + "1.0795112252", + "1.1011628994", + "1.0598295533", + "0.9731678648", + "0.9855502077", + "0.9920412789", + "1.0524678157", + "1.0436682831", + "1.0417495521", + "1.0677518332", + "1.0650593976", + "1.056291342", + "1.0878119656", + "1.0958954301", + "1.0800841569", + "1.0534659071", + "1.048120334", + "1.0535310099", + "1.0422378687", + "0.9872069739", + "0.9922917958", + "0.9915365723", + "1.0383481568", + "0.9937778774", + "0.976229679", + "1.0536544852", + "1.0069218454", + "0.9820043829", + "0.9950398741", + "0.9656553605", + "0.9308690023", + "1.0149570381", + "1.0173108245", + "1.0220880342", + "1.0274336322", + "0.9931326064", + "1.0537883557", + "1.0606244711", + "1.0571354686", + "1.069800534", + "1.0558844912", + "1.035668585", + "1.0270678163", + "1.0737196845", + "1.0929979572", + "1.1436769771", + "0.9865993609", + "0.9557720668", + "1.0487777807", + "1.0477610808", + "1.0349820051", + "0.991906718", + "1.0567300322", + "1.04767328", + "1.0503255423", + "1.0814648476", + "1.0231237144", + "1.0083900116", + "0.9900148833", + "1.018330522", + "0.9898375967", + "1.044983514", + "1.075976914", + "1.0986097618", + "1.0552935848", + "1.0266397963", + "1.046886693", + "1.0266403046", + "1.0130263297", + "0.9777712588", + "1.0127208183", + "0.9438103424", + "0.9610757134", + "1.0438844244", + "1.0322497636", + "1.0293513373", + "1.0395056445", + "1.04786853", + "1.0371911688", + "1.0491317364", + "1.0375982789", + "1.0351367723", + "1.0035476407", + "1.0095425465", + "1.0158005437", + "1.0029549983", + "1.0364936352", + "0.9687228469", + "1.0272207872", + "1.0243655546", + "1.0146060871", + "1.0138312107", + "1.0399733355", + "1.0165820987", + "0.9862759607", + "0.9009478613", + "0.9127524061", + "0.913769682", + "0.8577929048", + "0.8699198253", + "0.8666314233", + "0.8479572242", + "0.8566391759", + "0.852598389", + "0.8426352392", + "0.8684362658", + "0.8651249291", + "0.8284956508", + "0.8470340835", + "0.8047928245", + "0.8074717633", + "0.8214621786", + "0.8229632883", + "0.8096334432", + "0.7991120491", + "0.8258664814", + "0.8117895343", + "0.7717832372", + "0.7791467728", + "0.9487143363", + "0.7690478275", + "0.7735921818", + "0.7771959557", + "0.7731433475", + "0.7402613208", + "0.7700699956", + "0.7901292378", + "0.7921219615", + "0.7902043621", + "0.7735212731", + "0.7723613435", + "0.7381249337", + "0.7404007352", + "0.8662841287", + "0.8774784848", + "0.7637652605", + "0.7694226723", + "0.7594939807", + "0.7236258001", + "0.749234197", + "0.7399690825", + "0.7321043347", + "0.7312504043", + "0.7387749602", + "0.7327674864", + "0.7518364053", + "0.7457600885", + "0.7574824393", + "0.7522496635", + "0.7390334143", + "0.7270997126", + "0.7367604385", + "0.7326069542", + "0.7385092568", + "0.730560912", + "0.7060003763", + "0.7154133428", + "0.7092449274", + "0.737276115", + "0.7349711674", + "0.7668645341", + "0.7806956569", + "0.7933877676", + "0.8243067403", + "0.8279306392", + "0.816717496", + "0.8327678939", + "0.8133178061", + "0.809741105", + "0.8266581639", + "0.8164591557", + "0.8210179275", + "0.8290709492", + "0.8148561127", + "0.8066809061", + "0.8667718856", + "0.8432341123", + "0.8435511383", + "0.8441945522", + "0.8387019575", + "0.8288073334", + "0.8889844098", + "0.8598932769", + "0.7821360429", + "0.8009510623", + "0.8207168205", + "0.7968265108", + "0.7785298855", + "0.7599999996", + "0.7763051911", + "0.7836615913", + "0.7660597683", + "0.8215678341", + "0.8277390912", + "0.8314567487", + "0.8667188403", + "0.8207304583", + "0.846406266", + "0.731370003", + "0.7142515649", + "0.817279331", + "0.8282680196", + "0.7623393101", + "0.7636161865", + "0.7217993386", + "0.7382185096", + "0.6689732571", + "0.6927123865", + "0.6801369253", + "0.6579341056", + "0.7088995915", + "0.7151989271", + "0.6952006217", + "0.7077290676", + "0.7062550699", + "0.6746568601", + "0.6844559996", + "0.7333845496", + "0.7688087127", + "0.7436215334", + "0.7243097312", + "0.673163656", + "0.6849622567", + "0.6846557065", + "0.7154716019", + "0.7158292977", + "0.6485467766", + "0.0", + "0.3596350748", + "0.3693786508", + "0.3491401949", + "0.4362161945", + "0.6510470379", + "0.6320107144", + "0.6368724026", + "0.6384387846", + "0.670150898", + "0.6787869567", + "0.6904447109", + "0.6728801714", + "0.6595158558", + "0.6238828742", + "0.6229685018", + "0.6294351916", + "0.7613327223", + "0.7414492346", + "0.816832133", + "0.7708425799", + "0.7251850032", + "0.7313900401", + "0.7363303295", + "0.7310216708", + "0.7252200698", + "0.7526603388", + "0.734803875", + "0.7267543814", + "0.7177414144", + "0.7396788914", + "0.7341770466", + "0.7358109386", + "0.6997608475", + "0.7019173189", + "0.675043106", + "0.7583067965", + "0.7340450202", + "0.7194032066", + "0.6996718607", + "0.8353955514", + "0.8386553597", + "0.866562341", + "0.821198162", + "0.825301478", + "0.8393499575", + "0.8530664233", + "0.8767056445", + "0.8179009528", + "0.7959147849", + "0.8245210174", + "0.7927716728", + "0.7960854981", + "0.8090527449", + "0.78940738", + "0.7966697242", + "0.7823048713", + "0.7782164424", + "0.8599600751", + "0.8521515407", + "0.8064707312", + "0.8272376939", + "0.8239184232", + "0.8771277827", + "0.804526137", + "0.7887373601", + "0.806369887", + "0.8071930027", + "0.8086228649", + "0.8340438349", + "0.8459684843", + "0.9044325045", + "0.9078188987", + "0.8908645762", + "0.8760967139", + "0.856870581", + "0.8260047017", + "1.1872867635", + "1.21172724", + "1.1755719615", + "1.1862225662", + "1.1634670317", + "1.1497154108", + "1.2400637963", + "1.2689079814", + "1.2700259036", + "1.194295039", + "1.1918271637", + "1.1918938793", + "1.1856839851", + "1.2037711937", + "1.1797883379", + "1.1556405074", + "1.1184373975", + "1.1265803951", + "1.1047618165", + "1.125493466", + "1.0837778957", + "1.0982654286", + "1.0999178548", + "1.1055336958", + "1.0980408804", + "1.0975754813", + "1.0948363334", + "1.0851387063", + "1.1028459286", + "1.082992293", + "1.0854394439", + "1.0811796095", + "1.0958380565", + "1.1149381586", + "1.0582360399", + "1.0806368141", + "1.0886744449", + "1.0878165353", + "1.0710731899", + "1.0602953504", + "1.0604265081", + "1.0651191557", + "1.0684359295", + "1.1011565415", + "1.13235863", + "1.1272866521", + "1.0512283816", + "1.0521196666", + "1.0473713549", + "1.053420605", + "0.974452287", + "0.8714089699", + "0.8850414829", + "1.1242685846", + "1.3321192104", + "1.0857597735", + "1.146275059", + "1.147667008", + "1.1235304006", + "1.1312089038", + "1.1539292948", + "1.1437308269", + "1.1611399229", + "1.1622939843", + "1.1588566543", + "1.1585176959", + "1.1853021682", + "1.1552596505", + "1.158898929", + "1.1627235105", + "1.1629430443", + "1.1262956799", + "1.1311719951", + "1.1522180352", + "1.1326702222", + "1.1400109693", + "1.0919223839", + "1.0843704782", + "1.1150830592", + "1.1112588122", + "1.1236079044", + "1.1284655402", + "1.1231101859", + "1.1226736157", + "1.1137247445", + "1.1257411647", + "1.1033904234", + "1.119338942", + "1.1280516811", + "1.1237663992", + "1.1319639656", + "1.1472201871", + "1.1426895346", + "1.0837838306", + "1.1215343408", + "1.1120357374", + "1.0741298087", + "1.3443051362", + "1.376941794", + "1.3424183547", + "1.3510972082", + "1.3249876644", + "1.1387778245", + "0.9920480526", + "0.9840806273", + "1.0374157384", + "1.0006878237", + "1.0057283148", + "1.0034977167", + "0.991151296", + "0.9960938971", + "0.9493436126", + "1.0046390887", + "0.9990013374", + "1.0444867603", + "1.0225819385", + "1.0149367023", + "1.0022668283", + "0.915155693", + "0.9190733091", + "1.0272280343", + "1.009784038", + "1.0137313505", + "1.0085436995", + "0.9811275667", + "1.0702029317", + "1.0177724978", + "1.0178188727", + "1.1148677426", + "1.1454147054", + "1.1008265191", + "1.1078188905", + "1.0805825457", + "1.0859703439", + "1.085137466", + "1.0773041504", + "1.0199247685", + "1.1685385208", + "1.2227034883", + "1.1897264116", + "1.1789248107", + "1.1862307253", + "1.1268258867", + "1.1394267176", + "1.1464843306", + "1.1417222983", + "1.1910853398", + "1.197072212", + "1.2064710611", + "1.2185624413", + "1.1537384813", + "1.1955272024", + "1.1936587861", + "1.1200732239", + "1.1182009529", + "1.1463967266", + "1.1395000957", + "1.191318847", + "1.0949947358", + "1.0403240774", + "1.0581378083", + "1.0208824125", + "1.05328214", + "1.1365129008", + "1.149755257", + "1.1646714844", + "1.1799078916", + "1.0936764871", + "1.0260655362", + "1.0864482541", + "1.1591525484", + "1.0049870432", + "1.0338456453", + "1.0399678939", + "1.0967572658", + "1.0500873839", + "1.0566010297", + "1.0613833757", + "1.042632015", + "1.0688785619", + "1.1361562639", + "1.1427104281", + "1.1704959431", + "1.1834989333", + "1.1801192333", + "1.0587561529", + "1.08580046", + "1.0490895045", + "1.054506723", + "1.1064913349", + "1.1388045562", + "1.1307399346", + "1.139155398", + "1.1262500553", + "1.1133569693", + "1.1179034573", + "1.1715287492", + "1.2269145706", + "1.3236718918", + "1.2367963097", + "1.2361660048", + "1.2639917565", + "1.2013793968", + "1.2682255161", + "1.2632715896", + "1.2282464889", + "1.2375099546", + "1.1327960735", + "1.4243531388", + "1.3505078301", + "1.3596968505", + "1.2872064782", + "1.2994973198", + "1.2891122203", + "1.3913158294", + "1.3185474672", + "1.3567350821", + "1.3508179563", + "1.3287024383", + "1.2579296518", + "1.2606744953", + "1.3053330454", + "1.2990938038", + "1.3036826044", + "1.2690810166", + "1.2606619921", + "1.2526251507", + "1.3122742722", + "1.2711029163", + "1.2787716187", + "1.2492924475", + "1.2020393672", + "1.3056020195", + "1.2436861306", + "1.2368194859", + "1.2570477178", + "1.3331919754", + "1.345463534", + "1.3540523972", + "1.3491646286", + "1.3429599022", + "1.3328001074", + "1.3318182186", + "1.3251651367", + "1.4433600142", + "1.4242432893", + "1.2981784092", + "1.3474637522", + "1.3473910703", + "1.3410318419", + "1.3435446124", + "1.4096271125", + "1.4041770901", + "1.3590555507", + "1.3450202071", + "1.342367305", + "1.330871221", + "1.3496046147", + "1.3180809905", + "1.3090368402", + "1.3048752803", + "1.3204359742", + "1.3159062851", + "1.3068043374", + "1.3133742518", + "1.3280495656", + "1.3428001381", + "1.3517345049", + "1.3781991926", + "1.3297298001", + "1.3537415678", + "1.3646665914", + "1.308354946", + "1.3626746851", + "1.3376068328", + "1.3135442437", + "1.3130454729", + "1.32073879", + "1.3147036803", + "1.2878357572", + "1.2957808153", + "1.2989230247", + "1.2702033092" + ] + }, + "essential_compounds": [ + "12dhchol", + "26dap_M", + "C02528", + "ac", + "acgam", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_L", + "arbt", + "arg_L", + "asn_L", + "asp_L", + "btn", + "but", + "ca2", + "cd2", + "cellb", + "cgly", + "cholate", + "cl", + "co2", + "cobalt2", + "cro4", + "cu2", + "cys_L", + "dgchol", + "drib", + "fe2", + "fe3", + "for", + "fru", + "gal", + "galmannan", + "galt", + "galur", + "gchola", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "h2o", + "h", + "hdca", + "hg2", + "his_L", + "hxan", + "indole", + "k", + "lac_D", + "lac_L", + "lcts", + "leu_L", + "lys_L", + "malt", + "malthx", + "malttr", + "man", + "meoh", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "na1", + "nac", + "nh4", + "o2", + "ocdca", + "pb", + "pect", + "phe_L", + "pi", + "pnto_R", + "pro_L", + "ptrc", + "pydam", + "pydx", + "pydxn", + "rib_D", + "ribflv", + "salcn", + "ser_L", + "so4", + "spmd", + "succ", + "taur", + "tchola", + "tdchola", + "thr_L", + "trp_L", + "ttdca", + "tyr_L", + "ura", + "urea", + "xan", + "xyl_D", + "zn2" + ] +} \ No newline at end of file diff --git a/agents/agora/agent_460.json b/agents/agora/agent_460.json new file mode 100644 index 0000000000000000000000000000000000000000..2a85650750f28b026314d9eca338acf2e795080b --- /dev/null +++ b/agents/agora/agent_460.json @@ -0,0 +1,950 @@ +{ + "id": 460, + "name": "Klebsiella_sp_1_1_55", + "N_R": 1547, + "taxonomy": { + "k": 460, + "tax_distance": [ + "2.4496776745", + "2.0317998072", + "2.0251005781", + "2.2516832852", + "1.9330832113", + "1.9782118982", + "1.9595066004", + "1.9565640061", + "2.0205456044", + "1.9389015125", + "1.9559662159", + "2.0640885297", + "2.037106308", + "2.2651202659", + "2.313477083", + "2.3438095936", + "2.2241591957", + "2.2330833125", + "2.2685577881", + "1.8015421041", + "1.7368711274", + "1.4863498687", + "1.4196994363", + "1.2982197596", + "1.1240404808", + "1.1182292727", + "1.1148747013", + "1.1172357557", + "1.1014694657", + "1.0927837028", + "1.0952346089", + "1.196820545", + "1.2063583478", + "1.2027244378", + "1.2184205064", + "1.1869189264", + "1.2096648705", + "1.227970782", + "1.208938819", + "1.501879478", + "1.2467210993", + "1.1653600433", + "1.1721253495", + "1.1747329296", + "1.1715011876", + "1.1744745693", + "1.1695759644", + "1.1699609997", + "1.1641460889", + "1.1561848993", + "1.0977627213", + "1.1032751213", + "1.097534288", + "1.0696880174", + "1.0762097615", + "1.1053117587", + "1.0792348719", + "1.0772188443", + "1.0979732499", + "1.0956333552", + "1.0788915277", + "1.1042422993", + "1.1063170891", + "1.1049861959", + "1.1193774134", + "1.1210995753", + "1.1210995753", + "1.127745158", + "1.127745158", + "1.127745158", + "1.127745158", + "1.127745158", + "1.127745158", + "1.127745158", + "1.127745158", + "1.1236657953", + "1.1240115325", + "1.1175798249", + "1.1280722995", + "1.1271670576", + "1.123268888", + "1.1215262144", + "1.1228447842", + "1.1193429037", + "1.1142651554", + "1.117610281", + "1.1230560478", + "1.1185178561", + "1.1035179", + "1.1118890149", + "1.1066136297", + "1.1227615707", + "1.1180642815", + "1.1221978508", + "1.1001581402", + "1.0947579564", + "1.1088243115", + "1.1194847205", + "1.1362817635", + "1.1186914733", + "1.1086963548", + "1.1073785372", + "1.0881281573", + "1.1010066463", + "1.1598790913", + "1.1547271796", + "1.2216234369", + "1.1877841809", + "1.1249755401", + "1.1287017969", + "1.131435264", + "1.1243311825", + "1.1243311825", + "1.1057072803", + "1.1086114266", + "1.1005109099", + "1.1360366086", + "1.0728140591", + "1.0507231457", + "1.068587502", + "1.0553165067", + "1.0557420991", + "1.1739938127", + "1.1811842635", + "1.2026252764", + "1.0072215607", + "1.176970514", + "1.1836457481", + "1.1682826558", + "1.187916661", + "1.177103747", + "1.1821702333", + "1.1736739557", + "1.1667238506", + "1.1575941535", + "1.1582522739", + "1.1771661971", + "1.1502847532", + "1.1323205427", + "1.2262084836", + "1.2275823573", + "1.196893945", + "1.2544736356", + "1.1920522231", + "1.1975461659", + "1.1945851408", + "1.2192921259", + "1.2084696771", + "1.1166266051", + "1.0877165156", + "1.0489054556", + "1.0268041624", + "1.0181623561", + "1.013042165", + "1.0499137907", + "1.0524089166", + "1.0242208477", + "1.0125828938", + "1.0161694028", + "1.0851225136", + "1.0918308957", + "1.0614599491", + "1.1853780223", + "1.1798631269", + "1.1822041781", + "1.1399272519", + "1.1360732724", + "1.1739798461", + "1.1658030318", + "1.1345610093", + "1.136120368", + "1.1541403617", + "1.110835567", + "1.099999438", + "1.1011599905", + "1.1346463319", + "1.1228227792", + "1.104195922", + "1.1231845443", + "1.1045165456", + "1.1183314878", + "1.1125489168", + "1.1114805348", + "1.1320389865", + "1.1278264391", + "1.1107073937", + "1.1449357677", + "1.129701526", + "1.134813835", + "1.1342071495", + "1.0986055191", + "1.0945853109", + "1.0791179593", + "1.0974644645", + "1.0943980897", + "1.0687064959", + "1.051693748", + "1.0463860971", + "1.0511278817", + "1.050269271", + "1.0830352309", + "1.0820545691", + "1.1060943667", + "1.0839853397", + "1.0444773477", + "1.0476417585", + "1.0727036505", + "1.0689947664", + "1.0447441497", + "1.0372867998", + "1.0396400591", + "1.048817594", + "0.9745834971", + "1.0171865979", + "1.0014828272", + "0.995321064", + "0.9890408192", + "0.9769382016", + "0.980108541", + "1.0222806304", + "1.4566724616", + "1.5414506607", + "1.4539860856", + "1.4391683735", + "1.4174957407", + "0.9711733996", + "0.9899778056", + "1.0399106707", + "1.0015499187", + "1.0167871217", + "1.1303242593", + "1.0840948664", + "1.1057465406", + "1.0644131945", + "0.977751506", + "0.9901338489", + "0.9966249201", + "1.0570514569", + "1.0482519243", + "1.0463331933", + "1.0723354744", + "1.0696430388", + "1.0608749832", + "1.0923956068", + "1.1004790713", + "1.0846677981", + "1.0580495483", + "1.0527039752", + "1.0581146511", + "1.0468215099", + "0.9917906151", + "0.996875437", + "0.9961202135", + "1.042931798", + "0.9983615186", + "0.9808133202", + "1.0582381264", + "1.0115054866", + "0.9865880241", + "0.9996235153", + "0.9702390017", + "0.9354526435", + "1.0195406793", + "1.0218944657", + "1.0266716754", + "1.0320172734", + "0.9977162476", + "1.0583719969", + "1.0652081123", + "1.0617191098", + "1.0743841752", + "1.0604681324", + "1.0402522262", + "1.0316514575", + "1.0783033257", + "1.0975815984", + "1.1482606183", + "0.9911830021", + "0.960355708", + "1.0533614219", + "1.052344722", + "1.0395656463", + "0.9964903592", + "1.0613136734", + "1.0522569212", + "1.0549091835", + "1.0860484888", + "1.0277073556", + "1.0129736528", + "0.9945985245", + "1.0229141632", + "0.9944212379", + "1.0495671552", + "1.0805605552", + "1.103193403", + "1.059877226", + "1.0312234375", + "1.0514703342", + "1.0312239458", + "1.0176099709", + "0.9823549", + "1.0173044595", + "0.9483939836", + "0.9656593546", + "1.0484680656", + "1.0368334048", + "1.0339349785", + "1.0440892857", + "1.0524521712", + "1.04177481", + "1.0537153776", + "1.0421819201", + "1.0397204135", + "1.0081312819", + "1.0141261877", + "1.0203841849", + "1.0075386395", + "1.0410772764", + "0.9733064881", + "1.0318044284", + "1.0289491958", + "1.0191897283", + "1.0184148519", + "1.0445569767", + "1.0211657399", + "0.9908596019", + "0.9055315025", + "0.9173360473", + "0.9183533232", + "0.862376546", + "0.8745034665", + "0.8712150645", + "0.8525408654", + "0.8612228171", + "0.8571820302", + "0.8472188804", + "0.873019907", + "0.8697085703", + "0.833079292", + "0.8516177247", + "0.8093764657", + "0.8120554045", + "0.8260458198", + "0.8275469295", + "0.8142170844", + "0.8036956903", + "0.8304501226", + "0.8163731755", + "0.7763668784", + "0.783730414", + "0.9532979775", + "0.7736314687", + "0.778175823", + "0.7817795969", + "0.7777269887", + "0.744844962", + "0.7746536368", + "0.794712879", + "0.7967056027", + "0.7947880033", + "0.7781049143", + "0.7769449847", + "0.7427085749", + "0.7449843764", + "0.8708677699", + "0.882062126", + "0.7683489017", + "0.7740063135", + "0.7640776219", + "0.7282094413", + "0.7538178382", + "0.7445527237", + "0.7366879759", + "0.7358340455", + "0.7433586014", + "0.7373511276", + "0.7564200465", + "0.7503437297", + "0.7620660805", + "0.7568333047", + "0.7436170555", + "0.7316833538", + "0.7413440797", + "0.7371905954", + "0.743092898", + "0.7351445532", + "0.7105840175", + "0.719996984", + "0.7138285686", + "0.7418597562", + "0.7395548086", + "0.7714481753", + "0.7852792981", + "0.7979714088", + "0.8288903815", + "0.8325142804", + "0.8213011372", + "0.8373515351", + "0.8179014473", + "0.8143247462", + "0.8312418051", + "0.8210427969", + "0.8256015687", + "0.8336545904", + "0.8194397539", + "0.8112645473", + "0.8713555268", + "0.8478177535", + "0.8481347795", + "0.8487781934", + "0.8432855987", + "0.8333909746", + "0.893568051", + "0.8644769181", + "0.7867196841", + "0.8055347035", + "0.8253004617", + "0.801410152", + "0.7831135267", + "0.7645836408", + "0.7808888323", + "0.7882452325", + "0.7706434095", + "0.8261514753", + "0.8323227324", + "0.8360403899", + "0.8713024815", + "0.8253140995", + "0.8509899072", + "0.7359536442", + "0.7188352061", + "0.8218629722", + "0.8328516608", + "0.7669229513", + "0.7681998277", + "0.7263829798", + "0.7428021508", + "0.6735568983", + "0.6972960277", + "0.6847205665", + "0.6625177468", + "0.7134832327", + "0.7197825683", + "0.6997842629", + "0.7123127088", + "0.7108387111", + "0.6792405013", + "0.6890396408", + "0.7379681908", + "0.7733923539", + "0.7482051746", + "0.7288933724", + "0.6777472972", + "0.6895458979", + "0.6892393477", + "0.7200552431", + "0.7204129389", + "0.6531304178", + "0.3596350748", + "0.0", + "0.1791395296", + "0.2110667357", + "0.4407998357", + "0.6556306791", + "0.6365943556", + "0.6414560438", + "0.6430224258", + "0.6747345392", + "0.6833705979", + "0.6950283521", + "0.6774638126", + "0.664099497", + "0.6284665154", + "0.627552143", + "0.6340188328", + "0.7659163635", + "0.7460328758", + "0.8214157742", + "0.7754262211", + "0.7297686444", + "0.7359736813", + "0.7409139707", + "0.735605312", + "0.729803711", + "0.75724398", + "0.7393875162", + "0.7313380226", + "0.7223250556", + "0.7442625326", + "0.7387606878", + "0.7403945798", + "0.7043444887", + "0.7065009601", + "0.6796267472", + "0.7628904377", + "0.7386286614", + "0.7239868478", + "0.7042555019", + "0.8399791926", + "0.8432390009", + "0.8711459822", + "0.8257818032", + "0.8298851192", + "0.8439335987", + "0.8576500645", + "0.8812892857", + "0.822484594", + "0.8004984261", + "0.8291046586", + "0.797355314", + "0.8006691393", + "0.8136363861", + "0.7939910212", + "0.8012533654", + "0.7868885125", + "0.7828000836", + "0.8645437163", + "0.8567351819", + "0.8110543724", + "0.8318213351", + "0.8285020644", + "0.8817114239", + "0.8091097782", + "0.7933210013", + "0.8109535282", + "0.8117766439", + "0.8132065061", + "0.8386274761", + "0.8505521255", + "0.9090161457", + "0.9124025399", + "0.8954482174", + "0.8806803551", + "0.8614542222", + "0.8305883429", + "1.1918704047", + "1.2163108812", + "1.1801556027", + "1.1908062074", + "1.1680506729", + "1.154299052", + "1.2446474375", + "1.2734916226", + "1.2746095448", + "1.1988786802", + "1.1964108049", + "1.1964775205", + "1.1902676263", + "1.2083548349", + "1.1843719791", + "1.1602241486", + "1.1230210387", + "1.1311640363", + "1.1093454577", + "1.1300771072", + "1.0883615369", + "1.1028490698", + "1.104501496", + "1.110117337", + "1.1026245216", + "1.1021591225", + "1.0994199746", + "1.0897223475", + "1.1074295698", + "1.0875759342", + "1.0900230851", + "1.0857632507", + "1.1004216977", + "1.1195217998", + "1.0628196811", + "1.0852204553", + "1.0932580861", + "1.0924001765", + "1.0756568311", + "1.0648789916", + "1.0650101493", + "1.0697027969", + "1.0730195707", + "1.1057401827", + "1.1369422712", + "1.1318702933", + "1.0558120228", + "1.0567033078", + "1.0519549961", + "1.0580042462", + "0.9790359282", + "0.8759926111", + "0.8896251241", + "1.1288522258", + "1.3367028516", + "1.0903434147", + "1.1508587002", + "1.1522506492", + "1.1281140418", + "1.135792545", + "1.158512936", + "1.1483144681", + "1.1657235641", + "1.1668776255", + "1.1634402955", + "1.1631013371", + "1.1898858094", + "1.1598432917", + "1.1634825702", + "1.1673071517", + "1.1675266855", + "1.1308793211", + "1.1357556363", + "1.1568016764", + "1.1372538634", + "1.1445946105", + "1.0965060251", + "1.0889541194", + "1.1196667004", + "1.1158424534", + "1.1281915456", + "1.1330491814", + "1.1276938271", + "1.1272572569", + "1.1183083857", + "1.1303248059", + "1.1079740646", + "1.1239225832", + "1.1326353223", + "1.1283500404", + "1.1365476068", + "1.1518038283", + "1.1472731758", + "1.0883674718", + "1.126117982", + "1.1166193786", + "1.0787134499", + "1.3488887774", + "1.3815254352", + "1.3470019959", + "1.3556808494", + "1.3295713056", + "1.1433614657", + "0.9966316938", + "0.9886642685", + "1.0419993796", + "1.0052714649", + "1.010311956", + "1.0080813579", + "0.9957349372", + "1.0006775383", + "0.9539272538", + "1.0092227299", + "1.0035849786", + "1.0490704015", + "1.0271655797", + "1.0195203435", + "1.0068504695", + "0.9197393342", + "0.9236569503", + "1.0318116755", + "1.0143676792", + "1.0183149917", + "1.0131273407", + "0.9857112079", + "1.0747865729", + "1.022356139", + "1.0224025139", + "1.1194513838", + "1.1499983466", + "1.1054101603", + "1.1124025317", + "1.0851661869", + "1.0905539851", + "1.0897211072", + "1.0818877916", + "1.0245084097", + "1.173122162", + "1.2272871295", + "1.1943100528", + "1.1835084519", + "1.1908143665", + "1.1314095279", + "1.1440103588", + "1.1510679718", + "1.1463059395", + "1.195668981", + "1.2016558532", + "1.2110547023", + "1.2231460825", + "1.1583221225", + "1.2001108436", + "1.1982424273", + "1.1246568651", + "1.1227845941", + "1.1509803678", + "1.1440837369", + "1.1959024882", + "1.099578377", + "1.0449077186", + "1.0627214495", + "1.0254660537", + "1.0578657812", + "1.141096542", + "1.1543388982", + "1.1692551256", + "1.1844915328", + "1.0982601283", + "1.0306491774", + "1.0910318953", + "1.1637361896", + "1.0095706844", + "1.0384292865", + "1.0445515351", + "1.101340907", + "1.0546710251", + "1.0611846709", + "1.0659670169", + "1.0472156562", + "1.0734622031", + "1.1407399051", + "1.1472940693", + "1.1750795843", + "1.1880825745", + "1.1847028745", + "1.0633397941", + "1.0903841012", + "1.0536731457", + "1.0590903642", + "1.1110749761", + "1.1433881974", + "1.1353235758", + "1.1437390392", + "1.1308336965", + "1.1179406105", + "1.1224870985", + "1.1761123904", + "1.2314982118", + "1.328255533", + "1.2413799509", + "1.240749646", + "1.2685753977", + "1.205963038", + "1.2728091573", + "1.2678552308", + "1.2328301301", + "1.2420935958", + "1.1373797147", + "1.42893678", + "1.3550914713", + "1.3642804917", + "1.2917901194", + "1.304080961", + "1.2936958615", + "1.3958994706", + "1.3231311084", + "1.3613187233", + "1.3554015975", + "1.3332860795", + "1.262513293", + "1.2652581365", + "1.3099166866", + "1.303677445", + "1.3082662456", + "1.2736646578", + "1.2652456333", + "1.2572087919", + "1.3168579134", + "1.2756865575", + "1.2833552599", + "1.2538760887", + "1.2066230084", + "1.3101856607", + "1.2482697718", + "1.2414031271", + "1.261631359", + "1.3377756166", + "1.3500471752", + "1.3586360384", + "1.3537482698", + "1.3475435434", + "1.3373837486", + "1.3364018598", + "1.3297487779", + "1.4479436554", + "1.4288269305", + "1.3027620504", + "1.3520473934", + "1.3519747115", + "1.3456154831", + "1.3481282536", + "1.4142107537", + "1.4087607313", + "1.3636391919", + "1.3496038483", + "1.3469509462", + "1.3354548622", + "1.3541882559", + "1.3226646317", + "1.3136204814", + "1.3094589215", + "1.3250196154", + "1.3204899263", + "1.3113879786", + "1.317957893", + "1.3326332068", + "1.3473837793", + "1.3563181461", + "1.3827828338", + "1.3343134413", + "1.358325209", + "1.3692502326", + "1.3129385872", + "1.3672583263", + "1.342190474", + "1.3181278849", + "1.3176291141", + "1.3253224312", + "1.3192873215", + "1.2924193984", + "1.3003644565", + "1.3035066659", + "1.2747869504" + ] + }, + "essential_compounds": [ + "12dhchol", + "26dap_M", + "Lcyst", + "Lcystin", + "ac", + "acgam", + "adocbl", + "ala_L", + "alaasp", + "alagln", + "alaglu", + "alagly", + "alahis", + "alaleu", + "alathr", + "arab_L", + "arbt", + "asn_L", + "aso3", + "aso4", + "asp_L", + "btn", + "but", + "butso3", + "ca2", + "cbl1", + "cbl2", + "cd2", + "cgly", + "cholate", + "cl", + "co2", + "cobalt2", + "cro4", + "cu2", + "cys_L", + "ethso3", + "fe2", + "fe3", + "for", + "fru", + "fum", + "gal", + "glc_D", + "gln_L", + "glu_L", + "gly", + "glyasn", + "glyasp", + "glycys", + "glygln", + "glyglu", + "glyleu", + "glymet", + "glyphe", + "glypro", + "glytyr", + "gthox", + "gthrd", + "h2o", + "h", + "hdca", + "hexs", + "hg2", + "his_L", + "hxan", + "ile_L", + "isetac", + "k", + "kesto", + "kestopt", + "kestottr", + "lac_D", + "leu_L", + "lys_L", + "malt", + "malthx", + "malttr", + "met_D", + "met_L", + "metala", + "metsox_R_L", + "metsox_S_L", + "mg2", + "mn2", + "mops", + "mso3", + "na1", + "nac", + "nh4", + "no3", + "o2", + "ocdca", + "pb", + "phe_L", + "pi", + "pnto_R", + "pro_L", + "ptrc", + "pydx", + "rbflvrd", + "ribflv", + "salcn", + "ser_L", + "so4", + "spmd", + "succ", + "sulfac", + "taur", + "thr_L", + "thymd", + "trp_L", + "ttdca", + "tyr_L", + "ura", + "urea", + "uri", + "val_L", + "xyl_D", + "zn2" + ] +} \ No newline at end of file